496 304 58 31 chr1 321 563 -282193101 - MIR SINE MIR -10 252 1 2182 121 7 0 chr1 1713 2019 -282191645 + AluSx SINE Alu 1 308 -4 5087 58 20 1 chr1 2481 3389 -282190275 - L1PA7 LINE L1 -519 5635 4716 4071 52 2 2 chr1 3389 3888 -282189776 + L1PA7 LINE L1 5652 6150 -4 283 320 96 17 chr1 4183 4361 -282189303 - MIR SINE MIR -42 220 29 914 134 0 0 chr1 4568 4695 -282188969 - FLAM_C SINE Alu -16 127 1 2161 114 0 14 chr1 6129 6426 -282187238 + AluSx SINE Alu 1 293 -19 196 242 16 32 chr1 10004 10066 -282183598 - L2 LINE L2 -7 3265 3205 208 114 43 43 chr1 11248 11318 -282182346 + (CATA)n Simple_repeat Simple_repeat 1 70 0 2950 176 42 8 chr1 12040 12570 -282181094 + MER44D DNA MER2_type 2 604 -1 4751 164 19 23 chr1 15095 15995 -282177669 + L1MB3 LINE L1 5286 6181 -2 24 0 0 0 chr1 16786 16810 -282176854 + AT_rich Low_complexity Low_complexity 1 24 0 612 180 78 7 chr1 16857 16994 -282176670 + MLT1C LTR MaLR 336 465 -2 512 278 83 40 chr1 18807 19156 -282174508 + L1 LINE L1 2955 3318 -2828 257 150 0 17 chr1 19159 19219 -282174445 + L1MC5 LINE L1 7473 7531 -430 380 236 21 62 chr1 19306 19450 -282174214 + L1ME3A LINE L1 5962 6099 -71 25 0 0 0 chr1 19523 19548 -282174116 + AT_rich Low_complexity Low_complexity 1 25 0 2977 212 9 3 chr1 19613 20268 -282173396 + L1 LINE L1 4623 5281 -865 245 88 0 0 chr1 20240 20274 -282173390 + L1P LINE L1 5254 5287 -885 * 352 303 74 6 chr1 21024 21186 -282172478 - MER58A DNA MER1_type -51 173 1 437 246 136 35 chr1 21611 21810 -282171854 + Charlie8 DNA MER1_type 94 276 -2141 521 261 118 29 chr1 22048 22286 -282171378 + MLT1I LTR MaLR 118 376 -33 1119 239 0 0 chr1 22713 22931 -282170733 + Tigger7 DNA MER2_type 11 228 -505 25 31 0 0 chr1 25173 25205 -282168459 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr1 25457 25480 -282168184 + AT_rich Low_complexity Low_complexity 1 23 0 218 239 0 45 chr1 28674 28762 -282164902 + (CGGGG)n Simple_repeat Simple_repeat 1 84 0 201 167 0 0 chr1 29360 29396 -282164268 + (TA)n Simple_repeat Simple_repeat 2 37 0 307 198 25 12 chr1 29856 29937 -282163727 - L1M4 LINE L1 -1042 5104 5023 667 260 41 18 chr1 29945 30114 -282163550 - MER41D LTR ERV1 -10 547 375 1783 106 4 12 chr1 30150 30396 -282163268 - AluSx SINE Alu -66 246 3 1116 258 153 50 chr1 30729 31199 -282162465 - HAL1 LINE L1 -655 1852 1432 1323 236 32 43 chr1 31199 31568 -282162096 + MLT1A1 LTR MaLR 1 365 0 1116 258 153 50 chr1 31568 31982 -282161682 - HAL1 LINE L1 -1075 1432 877 311 319 36 7 chr1 32021 32159 -282161505 - HAL1 LINE L1 -1745 762 621 245 286 12 36 chr1 33656 33740 -282159924 + CT-rich Low_complexity Low_complexity 6 87 0 1850 136 29 0 chr1 33870 34188 -282159476 - AluSx SINE Alu 0 326 1 217 297 0 0 chr1 34740 34804 -282158860 - MIR3 SINE MIR -37 171 108 309 294 75 20 chr1 35894 36040 -282157624 - MLT1K LTR MaLR -15 573 420 309 186 0 0 chr1 36046 36116 -282157548 + (TCCA)n Simple_repeat Simple_repeat 1 70 0 208 257 18 0 chr1 36202 36315 -282157349 + (TCCA)n Simple_repeat Simple_repeat 1 115 0 246 255 61 20 chr1 36757 36855 -282156809 - L2 LINE L2 -155 3117 3016 456 239 169 109 chr1 37601 37986 -282155678 + LTR16C LTR ERVL 69 476 -15 873 106 53 15 chr1 38164 38296 -282155368 - FLAM_C SINE Alu -6 137 1 789 218 24 12 chr1 38474 38639 -282155025 - MER58A DNA MER1_type -18 206 40 4840 225 125 29 chr1 38646 40449 -282153215 + L1M4b LINE L1 12 2002 -4853 333 257 0 0 chr1 40449 40706 -282152958 + (CA)n Simple_repeat Simple_repeat 1 257 0 1028 301 32 9 chr1 40723 41296 -282152368 + L1M4b LINE L1 1983 2723 -4415 935 167 108 39 chr1 41296 41500 -282152164 + L1MB8 LINE L1 5894 6111 -67 361 282 8 17 chr1 42611 42728 -282150936 + MER5A DNA MER1_type 9 124 -65 340 306 70 0 chr1 42759 42916 -282150748 + MIR SINE MIR 78 245 -17 1883 158 75 3 chr1 45085 45445 -282148219 + MLT1B LTR MaLR 1 386 -4 250 173 0 0 chr1 46029 46088 -282147576 + Charlie5 DNA MER1_type 65 123 -2489 3490 169 38 14 chr1 47068 47724 -282145940 + L1MC1 LINE L1 5662 6333 0 579 245 80 0 chr1 48073 48224 -282145440 + MER103 DNA DNA 2 164 -2 281 292 0 14 chr1 48959 49031 -282144633 - MIR SINE MIR -186 76 6 1735 189 113 0 chr1 50655 51010 -282142654 - MSTD LTR MaLR 0 396 2 5024 21 0 0 chr1 51744 52307 -282141357 - L1PA3 LINE L1 0 6155 5593 827 180 0 0 chr1 53933 54061 -282139603 - FLAM_A SINE Alu -5 128 1 2099 98 0 3 chr1 54067 54362 -282139302 - AluSx SINE Alu -18 294 1 29 0 0 0 chr1 54454 54483 -282139181 + AT_rich Low_complexity Low_complexity 1 29 0 262 316 7 37 chr1 56260 56396 -282137268 + (TATG)n Simple_repeat Simple_repeat 2 133 0 427 290 5 43 chr1 56426 56612 -282137052 + (TG)n Simple_repeat Simple_repeat 2 180 0 252 383 70 11 chr1 59128 59413 -282134251 - MARNA DNA Mariner -110 476 175 192 357 0 0 chr1 60018 60088 -282133576 - L3 LINE CR1 0 1577 1508 484 307 68 49 chr1 60195 60811 -282132853 - L1ME4a LINE L1 -11 6110 5483 237 33 0 0 chr1 61227 61257 -282132407 + (T)n Simple_repeat Simple_repeat 1 30 0 1988 126 7 7 chr1 62887 63181 -282130483 - AluSx SINE Alu -18 294 1 702 170 0 50 chr1 63486 63627 -282130037 - AluJo SINE Alu -177 135 2 808 251 6 0 chr1 63918 64101 -282129563 - LTR2 LTR ERV1 0 449 266 354 301 6 81 chr1 64097 64270 -282129394 - LTR2 LTR ERV1 -289 160 1 * 287 303 8 17 chr1 64747 64866 -282128798 + (TATATG)n Simple_repeat Simple_repeat 1 118 0 * 553 118 69 22 chr1 64819 65281 -282128383 + (TAGA)n Simple_repeat Simple_repeat 1 483 0 781 303 141 17 chr1 65842 66324 -282127340 - MLT1K LTR MaLR -9 579 38 263 242 84 21 chr1 68694 68789 -282124875 + MIR SINE MIR 66 166 -96 611 229 35 24 chr1 69410 69580 -282124084 - MLT1B LTR MaLR -35 355 184 22 35 0 0 chr1 71374 71403 -282122261 + AT_rich Low_complexity Low_complexity 1 29 0 1443 134 0 67 chr1 72972 73286 -282120378 - AluSx SINE Alu -7 305 13 287 155 0 40 chr1 73304 73388 -282120276 - Alu SINE Alu -6 296 243 321 205 12 48 chr1 74001 74084 -282119580 + HERV16 LTR ERVL 349 428 -4568 747 238 38 21 chr1 74759 74994 -282118670 - L1MB5 LINE L1 -8 6166 5928 292 300 129 24 chr1 75127 75297 -282118367 - L1MB5 LINE L1 -540 5638 5451 333 203 16 0 chr1 77678 77742 -282115922 - AluSc SINE Alu -117 182 118 677 285 77 8 chr1 77757 78122 -282115542 - L1MB5 LINE L1 -2389 3757 3368 979 163 6 17 chr1 82180 82402 -282111262 - AluJb SINE Alu 0 312 137 192 125 0 0 chr1 82460 82492 -282111172 + (TCTA)n Simple_repeat Simple_repeat 3 34 0 1946 93 11 14 chr1 82493 82772 -282110892 - AluSx SINE Alu -27 285 8 895 271 118 34 chr1 82783 83197 -282110467 - L1ME1 LINE L1 -44 6122 5674 765 205 0 54 chr1 83199 83384 -282110280 + MER4A LTR ERV1 1 175 -489 1636 126 13 82 chr1 83429 83689 -282109975 + MER4A LTR ERV1 369 605 -59 2458 43 0 3 chr1 83689 83989 -282109675 - AluY SINE Alu -12 299 1 1636 126 13 82 chr1 83989 84045 -282109619 + MER4A LTR ERV1 605 663 -1 1391 202 99 69 chr1 84046 84384 -282109280 - L1ME1 LINE L1 -491 5675 5349 1964 135 3 0 chr1 84384 84673 -282108991 - AluSx SINE Alu -17 295 6 1391 202 99 69 chr1 84673 84747 -282108917 - L1ME1 LINE L1 -817 5349 5279 1964 129 0 16 chr1 84747 85057 -282108607 - AluSx SINE Alu -7 305 1 1391 202 99 69 chr1 85057 85398 -282108266 - L1ME1 LINE L1 -887 5279 4897 1308 114 0 0 chr1 85403 85579 -282108085 + AluSg SINE Alu 1 176 -134 516 321 117 14 chr1 87157 87515 -282106149 - L2 LINE L2 -42 3271 2877 429 243 7 86 chr1 87634 87774 -282105890 - MER63 DNA MER1_type -307 755 1 249 232 0 0 chr1 87952 88021 -282105643 + (TG)n Simple_repeat Simple_repeat 1 69 0 449 270 0 6 chr1 88046 88224 -282105440 + (TG)n Simple_repeat Simple_repeat 1 177 0 218 219 0 0 chr1 88226 88267 -282105397 + (TATG)n Simple_repeat Simple_repeat 4 44 0 351 274 17 0 chr1 88272 88447 -282105217 + (TG)n Simple_repeat Simple_repeat 1 178 0 300 272 58 0 chr1 88448 88551 -282105113 + (CATG)n Simple_repeat Simple_repeat 1 109 0 297 203 121 18 chr1 92976 93069 -282100595 + MIR SINE MIR 64 162 -46 750 267 70 47 chr1 93386 93808 -282099856 - L1MEc LINE L1 -5497 899 465 1850 155 3 10 chr1 93808 94117 -282099547 - AluSp SINE Alu -1 312 6 750 267 70 47 chr1 94117 94139 -282099525 - L1MEc LINE L1 -5931 465 445 205 203 95 40 chr1 95875 95949 -282097715 - L2 LINE L2 -4 3268 3191 272 294 43 80 chr1 96141 96328 -282097336 + L2 LINE L2 2993 3172 -100 195 315 128 20 chr1 96793 96942 -282096722 + MIR SINE MIR 76 240 -22 256 329 0 0 chr1 99781 99860 -282093804 - L2 LINE L2 0 3272 3194 2174 108 10 0 chr1 100027 100333 -282093331 + AluSx SINE Alu 1 309 -3 1361 93 0 0 chr1 100333 100515 -282093149 + AluSg/x SINE Alu 126 307 -5 349 320 186 8 chr1 100528 100808 -282092856 - L2 LINE L2 -273 3040 2718 248 378 139 7 chr1 100891 101042 -282092622 - L2 LINE L2 -781 2533 2363 244 43 21 43 chr1 103700 103747 -282089917 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 1361 171 47 18 chr1 103755 104029 -282089635 - AluJo SINE Alu -30 282 1 516 318 0 30 chr1 107793 108172 -282085492 + (TG)n Simple_repeat Simple_repeat 1 367 0 419 343 0 4 chr1 108196 108505 -282085159 + (TG)n Simple_repeat Simple_repeat 1 307 0 2022 102 11 0 chr1 111512 111796 -282081868 - AluSx SINE Alu -24 288 2 211 204 0 0 chr1 113449 113493 -282080171 + GA-rich Low_complexity Low_complexity 2 45 0 198 0 0 0 chr1 115024 115046 -282078618 + (A)n Simple_repeat Simple_repeat 1 22 0 191 376 118 12 chr1 117802 117972 -282075692 + MIR SINE MIR 51 238 -24 727 224 12 0 chr1 119541 119711 -282073953 - L1MB4 LINE L1 -2 6178 6007 201 147 0 0 chr1 119844 119878 -282073786 + (CATATA)n Simple_repeat Simple_repeat 2 35 0 4867 244 61 28 chr1 119881 121895 -282071769 - L1 LINE L1 -1204 4942 2864 10281 124 8 6 chr1 123148 123412 -282070252 - L1PA7 LINE L1 -5 6464 6202 1941 108 64 3 chr1 123412 123707 -282069957 - AluSp SINE Alu 0 313 1 10281 124 8 6 chr1 123707 125808 -282067856 - L1PA7 LINE L1 -267 6202 4094 5405 246 31 34 chr1 125817 127647 -282066017 - L1PA7 LINE L1 -4639 1812 10 725 336 22 47 chr1 127882 128331 -282065333 + L1MC4a LINE L1 5491 5928 -1880 388 251 17 62 chr1 128549 128728 -282064936 - L1M4 LINE L1 -2554 3592 3422 626 203 5 26 chr1 128773 129143 -282064521 + GA-rich Low_complexity Low_complexity 1 362 0 2451 156 13 5 chr1 129420 129811 -282063853 + MSTD LTR MaLR 1 394 -2 801 86 19 0 chr1 130090 130196 -282063468 + BSR/Beta Satellite Satellite 1 107 -64 466 275 69 12 chr1 130230 130390 -282063274 + MIR SINE MIR 27 195 -67 284 191 87 87 chr1 130391 130465 -282063199 - MLT1I LTR MaLR -1 408 332 2035 121 0 43 chr1 130465 130788 -282062876 - AluY SINE Alu -2 309 1 284 191 87 87 chr1 130788 130839 -282062825 - MLT1I LTR MaLR -76 333 283 494 141 0 0 chr1 130850 130921 -282062743 + AluS SINE Alu 220 290 -19 302 318 64 12 chr1 131077 131250 -282062414 + LTR41 LTR ERVL 1 182 -591 2423 199 67 74 chr1 131789 132267 -282061397 - LOR1-int LTR ERV1 -2443 3888 3408 2143 99 0 7 chr1 132267 132559 -282061105 - AluSp SINE Alu -21 292 3 2423 199 67 74 chr1 132559 132648 -282061016 - LOR1-int LTR ERV1 -2923 3408 3320 1518 183 59 0 chr1 132648 132921 -282060743 + AluJb SINE Alu 1 289 -23 2423 199 67 74 chr1 132921 133393 -282060271 - LOR1-int LTR ERV1 -3011 3320 1010 1622 167 3 50 chr1 133403 133720 -282059944 + AluJo SINE Alu 3 304 -8 607 255 52 38 chr1 133747 133959 -282059705 - LTR57-int LTR ERVL -4768 575 361 790 122 0 0 chr1 133959 134066 -282059598 + AluSq/x SINE Alu 1 107 -205 2246 93 3 3 chr1 134972 135283 -282058381 + AluY SINE Alu 1 311 0 314 311 0 19 chr1 135678 135784 -282057880 + MER65-int LTR ERV1 2417 2520 -3811 253 271 0 0 chr1 135941 136000 -282057664 + MER65-int LTR ERV1 733 791 -4080 1830 115 11 7 chr1 136014 136301 -282057363 - AluY SINE Alu -23 288 1 304 26 0 0 chr1 136302 136341 -282057323 + HERVK9 LTR ERVK 5763 5801 -115 * 2090 120 3 6 chr1 136336 136661 -282057003 - HERVK9 LTR ERVK -1010 4906 4583 1886 30 0 0 chr1 136662 136892 -282056772 - HERVK9 LTR ERVK -1976 3940 3711 11634 63 9 2 chr1 136892 138410 -282055254 - HERVK9 LTR ERVK -3130 2786 1259 4515 58 8 3 chr1 138402 138991 -282054673 - HERVK9 LTR ERVK -5324 592 1 * 3816 86 24 4 chr1 138991 139492 -282054172 - MER9 LTR ERVK 0 511 1 2527 39 0 7 chr1 139814 140120 -282053544 - AluY SINE Alu -7 304 1 300 102 0 85 chr1 140463 140522 -282053142 + Charlie8 DNA MER1_type 103 156 -2261 2219 183 136 66 chr1 141003 141730 -282051934 + L1MC3 LINE L1 7001 7778 -7 1779 167 0 3 chr1 141734 142034 -282051630 + AluJb SINE Alu 1 299 -13 464 254 176 5 chr1 142155 142348 -282051316 - MER67A LTR ERV1 -317 226 1 225 264 271 0 chr1 142464 142593 -282051071 - L2 LINE L2 -5 3267 3104 2056 70 45 7 chr1 143294 143581 -282050083 + AluSq SINE Alu 1 298 -15 692 212 72 14 chr1 143762 144067 -282049597 - MLT1B LTR MaLR -17 373 16 869 236 39 19 chr1 144174 144432 -282049232 + MLT1A2 LTR MaLR 80 342 -32 457 166 12 0 chr1 144432 144519 -282049145 + MER2 DNA MER2_type 1 87 -152 440 312 70 10 chr1 146461 146660 -282047004 + L2 LINE L2 3059 3269 -44 203 152 22 0 chr1 152374 152420 -282041244 + GA-rich Low_complexity Low_complexity 1 47 0 22 35 0 0 chr1 153180 153209 -282040455 + GC_rich Low_complexity Low_complexity 1 29 0 2307 60 17 0 chr1 154441 154741 -282038923 - AluSp SINE Alu -8 305 1 2383 63 3 3 chr1 158274 158576 -282035088 + AluY SINE Alu 1 302 -9 37 23 0 0 chr1 160495 160539 -282033125 + GC_rich Low_complexity Low_complexity 1 44 0 24 32 0 0 chr1 160557 160588 -282033076 + GC_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr1 162906 162927 -282030737 + GC_rich Low_complexity Low_complexity 1 21 0 208 282 26 0 chr1 166242 166320 -282027344 + GA-rich Low_complexity Low_complexity 2 81 0 534 258 94 0 chr1 166424 166583 -282027081 - MIR SINE MIR -29 233 60 234 169 80 0 chr1 169451 169529 -282024135 + MLT1B LTR MaLR 287 452 -15 598 146 0 38 chr1 170042 170200 -282023464 + (GGGA)n Simple_repeat Simple_repeat 3 154 0 696 149 50 25 chr1 170580 170701 -282022963 + FLAM_A SINE Alu 13 136 -6 196 224 134 0 chr1 170859 170926 -282022738 + L2 LINE L2 1715 1790 -1524 201 222 0 0 chr1 171180 171243 -282022421 + (CA)n Simple_repeat Simple_repeat 1 63 0 194 105 26 0 chr1 171578 171616 -282022048 + G-rich Low_complexity Low_complexity 3 41 0 349 314 0 0 chr1 174564 174666 -282018998 + (CA)n Simple_repeat Simple_repeat 2 103 0 554 173 0 53 chr1 177539 177672 -282015992 - L1M4 LINE L1 -1286 4860 4735 2057 98 20 7 chr1 177688 177983 -282015681 - AluSx SINE Alu -13 299 1 265 175 88 0 chr1 185973 186030 -282007634 + MIR SINE MIR 79 140 -122 347 277 0 18 chr1 186589 186701 -282006963 + (CA)n Simple_repeat Simple_repeat 2 111 0 186 236 0 0 chr1 186715 186770 -282006894 + (CA)n Simple_repeat Simple_repeat 1 55 0 461 320 6 6 chr1 186784 187021 -282006643 + (CA)n Simple_repeat Simple_repeat 1 237 0 231 244 90 0 chr1 189284 189362 -282004302 - MER53 DNA DNA -83 106 22 382 153 45 18 chr1 189944 190055 -282003609 + CT-rich Low_complexity Low_complexity 4 117 0 297 289 0 11 chr1 192072 192162 -282001502 + (CGTG)n Simple_repeat Simple_repeat 1 89 0 265 235 12 19 chr1 192176 192338 -282001326 + (TG)n Simple_repeat Simple_repeat 1 161 0 1865 137 0 7 chr1 192605 192890 -282000774 + AluJo SINE Alu 5 287 -25 2129 121 3 6 chr1 193050 193363 -282000301 + AluSx SINE Alu 1 312 0 2133 110 10 0 chr1 193386 193686 -281999978 + AluSx SINE Alu 1 303 -9 24 0 0 0 chr1 194775 194799 -281998865 + GC_rich Low_complexity Low_complexity 1 24 0 1895 113 60 0 chr1 195477 195759 -281997905 - AluSg SINE Alu -4 306 8 213 258 113 80 chr1 195861 196012 -281997652 - L2 LINE L2 -911 2403 2248 2012 93 13 7 chr1 196355 196655 -281997009 - AluSq SINE Alu -11 302 1 1029 178 53 0 chr1 196660 196924 -281996740 + L1M4 LINE L1 4897 5174 -972 2081 141 0 0 chr1 197001 197307 -281996357 + AluSx SINE Alu 1 306 -6 803 123 0 8 chr1 200797 200927 -281992737 - FLAM_C SINE Alu -4 139 11 240 208 104 26 chr1 200960 201030 -281992634 + MIR SINE MIR 73 151 -111 1496 86 62 5 chr1 201030 201239 -281992425 - AluSg/x SINE Alu -10 300 80 2093 114 7 0 chr1 201255 201554 -281992110 - AluSp SINE Alu -12 301 1 259 213 0 0 chr1 201991 202038 -281991626 + MLT1G1 LTR MaLR 4 50 -545 388 229 63 80 chr1 202112 202287 -281991377 + MLT1G1 LTR MaLR 182 353 -242 375 221 88 27 chr1 204048 204209 -281989455 - MLT1H LTR MaLR -294 255 48 304 308 29 0 chr1 206598 206702 -281986962 - L1ME LINE L1 -408 5762 5656 1590 126 11 11 chr1 206958 207221 -281986443 - AluSp SINE Alu -7 306 44 1085 162 10 10 chr1 208075 208317 -281985347 - AluJb SINE Alu 0 312 116 192 125 0 0 chr1 208355 208387 -281985277 + (TCTA)n Simple_repeat Simple_repeat 3 34 0 1855 100 15 15 chr1 208388 208659 -281985005 - AluSx SINE Alu -27 285 15 737 175 80 69 chr1 209534 209686 -281983978 - L1M4 LINE L1 -879 5267 5109 1662 214 112 0 chr1 209686 210042 -281983622 - MSTD LTR MaLR 0 396 1 737 175 80 69 chr1 210042 210163 -281983501 - L1M4 LINE L1 -1037 5109 4991 2279 93 0 6 chr1 210163 210475 -281983189 - AluSx SINE Alu -2 310 1 2189 79 7 3 chr1 210476 210768 -281982896 - AluY SINE Alu -18 293 1 275 225 50 88 chr1 211005 211205 -281982459 - L1M4 LINE L1 -3733 2413 2222 2248 99 3 3 chr1 211219 211531 -281982133 - AluSq SINE Alu 0 313 2 1256 143 9 0 chr1 211532 211742 -281981922 - AluJb SINE Alu -9 303 92 295 194 23 63 chr1 212058 212233 -281981431 + (TG)n Simple_repeat Simple_repeat 1 168 0 313 172 23 69 chr1 212343 212517 -281981147 + (TG)n Simple_repeat Simple_repeat 1 166 0 180 0 0 0 chr1 212543 212563 -281981101 + (TG)n Simple_repeat Simple_repeat 1 20 0 276 189 23 69 chr1 212622 212797 -281980867 + (TG)n Simple_repeat Simple_repeat 1 167 0 209 115 35 46 chr1 212826 212913 -281980751 + (TG)n Simple_repeat Simple_repeat 1 86 0 293 207 29 52 chr1 212926 213100 -281980564 + (TG)n Simple_repeat Simple_repeat 1 170 0 2361 47 7 10 chr1 215557 215856 -281977808 - AluY SINE Alu -10 301 4 2095 117 0 13 chr1 215859 216159 -281977505 - AluSg SINE Alu -14 296 1 923 112 15 0 chr1 216159 216293 -281977371 - AluSq/x SINE Alu -176 136 1 1804 119 0 4 chr1 216348 216474 -281977190 - AluSx SINE Alu -53 259 134 1851 122 48 7 chr1 216474 216768 -281976896 - AluSg SINE Alu 0 310 5 1804 119 0 4 chr1 216768 216901 -281976763 - AluSx SINE Alu -178 134 1 353 73 36 0 chr1 216911 216966 -281976698 - Alu SINE Alu -8 294 238 4943 96 38 67 chr1 216969 217890 -281975774 - pTR5 LTR ERV1 0 2438 1545 219 219 0 55 chr1 219124 219197 -281974467 + G-rich Low_complexity Low_complexity 1 69 0 1163 180 8 25 chr1 222036 222281 -281971383 - MSTA LTR MaLR -187 241 1 832 293 77 37 chr1 223150 223227 -281970437 + L1MEc LINE L1 886 958 -5438 402 204 326 0 chr1 223227 223325 -281970339 + FLAM_A SINE Alu 2 131 -2 832 293 77 37 chr1 223325 223552 -281970112 + L1MEc LINE L1 958 1216 -5180 2082 108 3 44 chr1 223552 223891 -281969773 + AluSx SINE Alu 1 312 0 832 293 77 37 chr1 223891 224039 -281969625 + L1MEc LINE L1 1216 1357 -5039 696 230 81 53 chr1 224106 224196 -281969468 + L1MB5 LINE L1 4078 4164 -1982 2117 107 7 10 chr1 224196 224523 -281969141 + AluSp SINE Alu 1 313 0 1698 169 0 48 chr1 224532 224846 -281968818 + AluJb SINE Alu 1 299 -13 696 230 81 53 chr1 224846 225028 -281968636 + L1MB5 LINE L1 4171 4368 -1778 359 190 58 29 chr1 228894 229068 -281964596 + (CGGG)n Simple_repeat Simple_repeat 2 180 0 420 281 117 15 chr1 229603 229799 -281963865 + L1MB5 LINE L1 5451 5666 -512 852 234 35 0 chr1 229906 230137 -281963527 + L1MB5 LINE L1 5928 6166 -8 292 205 12 48 chr1 230827 230910 -281962754 - HERV16 LTR ERVL -4568 428 349 436 200 0 0 chr1 231524 231604 -281962060 + AluJ/FRAM SINE Alu 217 296 -16 2104 132 0 7 chr1 231606 231916 -281961748 + AluSx SINE Alu 1 308 -4 180 260 67 96 chr1 232408 232512 -281961152 + L2 LINE L2 3120 3220 -93 1694 128 10 24 chr1 232963 233253 -281960411 - AluJb SINE Alu 0 312 27 2035 108 10 3 chr1 233259 233547 -281960117 - AluSx SINE Alu -19 293 4 219 57 0 75 chr1 233674 233727 -281959937 + (TTTA)n Simple_repeat Simple_repeat 3 51 0 2345 80 6 10 chr1 233925 234238 -281959426 - AluSx SINE Alu 0 312 1 1109 189 148 33 chr1 234251 234521 -281959143 - AluSq SINE Alu -2 301 1 2950 218 70 36 chr1 234605 235254 -281958410 - L1MB5 LINE L1 0 6174 5475 2126 106 6 16 chr1 235254 235565 -281958099 - AluSx SINE Alu -4 308 1 2950 218 70 36 chr1 235565 235873 -281957791 - L1MB5 LINE L1 -699 5475 5179 1865 139 3 13 chr1 235936 236246 -281957418 + AluJb SINE Alu 3 309 -3 1797 91 0 4 chr1 437967 438209 -281755455 + AluSc SINE Alu 63 303 -6 457 258 24 0 chr1 438300 438424 -281755240 + MER66-int LTR ERV1 213 339 -6337 286 175 35 0 chr1 438569 438626 -281755038 - AluSp/q SINE Alu -5 298 240 1400 84 0 0 chr1 438627 438806 -281754858 - AluY SINE Alu -132 179 1 442 172 108 0 chr1 438840 438933 -281754731 - MER66A LTR ERV1 0 478 376 760 233 11 23 chr1 438933 439109 -281754555 - AluSq SINE Alu -3 310 137 1919 112 22 0 chr1 439124 439393 -281754271 - AluSx SINE Alu -37 275 1 445 298 45 20 chr1 439420 439618 -281754046 - MER66B LTR ERV1 -142 344 142 2040 94 43 0 chr1 442118 442395 -281751269 - AluSx SINE Alu -23 289 1 1350 164 98 0 chr1 442416 442529 -281751135 - AluJo SINE Alu -44 268 168 2559 38 0 22 chr1 442529 442847 -281750817 - AluY SINE Alu 0 311 1 1350 164 98 0 chr1 442847 442977 -281750687 - AluJo SINE Alu -144 168 1 312 61 41 0 chr1 442977 443026 -281750638 - AluJo SINE Alu -167 135 85 1599 120 43 0 chr1 443101 443335 -281750329 - AluSx SINE Alu -68 244 1 935 74 0 0 chr1 443852 443973 -281749691 + AluSg/x SINE Alu 184 304 -8 1732 122 26 51 chr1 443974 444286 -281749378 + AluSx SINE Alu 2 305 -7 353 231 136 0 chr1 444513 444682 -281748982 - MER63 DNA MER1_type -45 1017 826 240 265 0 15 chr1 444761 444804 -281748860 - AluJo SINE Alu -123 179 136 1895 128 0 52 chr1 444804 445110 -281748554 - AluSx SINE Alu -22 290 1 240 265 0 15 chr1 445110 445134 -281748530 - AluJo SINE Alu -166 136 113 2263 91 13 0 chr1 446449 446757 -281746907 - AluSx SINE Alu 0 312 1 2090 117 0 0 chr1 449452 449743 -281743921 - AluSx SINE Alu -21 291 1 414 142 142 19 chr1 450722 450828 -281742836 + MER20 DNA MER1_type 53 171 -48 2164 111 3 0 chr1 451886 452183 -281741481 - AluSg SINE Alu -12 298 1 309 243 70 119 chr1 452335 452361 -281741303 - HAL1 LINE L1 -2 2505 2479 2352 61 3 0 chr1 452361 452654 -281741010 + AluY SINE Alu 1 294 -17 309 243 70 119 chr1 452654 452699 -281740965 - HAL1 LINE L1 -28 2479 2433 1620 169 35 0 chr1 452699 452983 -281740681 + AluJo SINE Alu 4 297 -15 309 243 70 119 chr1 452983 453003 -281740661 - HAL1 LINE L1 -74 2433 2414 2162 88 10 7 chr1 453003 453298 -281740366 + AluY SINE Alu 1 296 -15 309 243 70 119 chr1 453298 453389 -281740275 - HAL1 LINE L1 -93 2414 2330 2239 97 3 0 chr1 453405 453703 -281739961 - AluSx SINE Alu -13 299 1 1628 149 57 7 chr1 453710 453992 -281739672 - AluJo SINE Alu -16 296 1 1018 157 17 0 chr1 454228 454406 -281739258 + AluJb SINE Alu 120 300 -12 2274 90 0 0 chr1 454406 454707 -281738957 + AluY SINE Alu 1 301 -10 255 261 85 24 chr1 454798 454963 -281738701 + (CTCA)n Simple_repeat Simple_repeat 4 178 0 379 243 47 24 chr1 454984 455233 -281738431 + (CTCA)n Simple_repeat Simple_repeat 1 254 0 255 318 6 11 chr1 455263 455439 -281738225 + (CA)n Simple_repeat Simple_repeat 1 175 0 * 378 268 36 40 chr1 455341 455684 -281737980 + (CTCA)n Simple_repeat Simple_repeat 1 341 0 437 256 64 21 chr1 455761 456102 -281737562 + (CTCA)n Simple_repeat Simple_repeat 1 355 0 332 339 0 0 chr1 456039 456207 -281737457 + (CA)n Simple_repeat Simple_repeat 1 168 0 * 431 266 40 29 chr1 456149 456322 -281737342 + (CTCA)n Simple_repeat Simple_repeat 4 178 0 285 204 57 45 chr1 456504 456580 -281737084 - AluJb SINE Alu -89 213 139 1621 155 13 44 chr1 456580 456761 -281736903 - AluJo SINE Alu -6 306 121 2158 113 7 0 chr1 456761 457071 -281736593 - AluSp SINE Alu -1 312 1 2145 105 16 3 chr1 457071 457376 -281736288 - AluSp SINE Alu -4 309 1 1988 128 0 3 chr1 457376 457657 -281736007 - AluSx SINE Alu -18 294 14 1621 155 13 44 chr1 457657 457789 -281735875 - AluJo SINE Alu -188 124 1 285 204 57 45 chr1 457789 457800 -281735864 - AluJb SINE Alu -163 139 125 1937 116 10 20 chr1 458095 458226 -281735438 + AluSq SINE Alu 4 135 -178 2360 88 0 0 chr1 458226 458522 -281735142 + AluSg SINE Alu 2 297 -13 2324 76 0 10 chr1 458522 458822 -281734842 + AluY SINE Alu 1 298 -13 1937 116 10 20 chr1 458822 458992 -281734672 + AluSq SINE Alu 133 303 -10 650 159 68 38 chr1 458993 459125 -281734539 + FRAM SINE Alu 9 144 -32 1393 128 0 0 chr1 459126 459322 -281734342 - AluSg/x SINE Alu -15 295 100 2258 94 0 3 chr1 459325 459622 -281734042 - AluSc SINE Alu -13 296 1 2300 96 0 3 chr1 459623 459926 -281733738 - AluSx SINE Alu -10 302 1 243 304 78 10 chr1 461032 461134 -281732530 + L2 LINE L2 3158 3266 -6 184 264 6 6 chr1 461193 461352 -281732312 + (TG)n Simple_repeat Simple_repeat 2 160 0 288 273 0 0 chr1 461397 461573 -281732091 + (TG)n Simple_repeat Simple_repeat 1 176 0 1029 211 127 24 chr1 464533 464607 -281729057 + MER54A LTR ERVL 489 554 -347 1857 128 10 14 chr1 464607 464897 -281728767 - AluSq SINE Alu -22 291 3 1029 211 127 24 chr1 464897 465191 -281728473 + MER54A LTR ERVL 554 895 -6 189 0 0 0 chr1 465779 465800 -281727864 + (GGCTG)n Simple_repeat Simple_repeat 1 21 0 190 324 14 0 chr1 466846 466920 -281726744 + MIR SINE MIR 56 130 -132 180 111 0 0 chr1 471419 471446 -281722218 + (TG)n Simple_repeat Simple_repeat 1 27 0 394 333 11 11 chr1 471519 471696 -281721968 + (TG)n Simple_repeat Simple_repeat 1 177 0 296 286 4 18 chr1 471753 472031 -281721633 + (TG)n Simple_repeat Simple_repeat 1 273 0 255 258 0 38 chr1 472036 472222 -281721442 + (CGTG)n Simple_repeat Simple_repeat 1 179 0 201 188 0 80 chr1 475042 475154 -281718510 + (CCGCT)n Simple_repeat Simple_repeat 3 105 0 202 260 0 52 chr1 479172 479268 -281714396 + (CAGGG)n Simple_repeat Simple_repeat 5 95 0 1300 96 15 20 chr1 481358 481555 -281712109 + AluSg/x SINE Alu 108 303 -7 562 189 78 20 chr1 481589 481742 -281711922 - L1MC4a LINE L1 -1260 6548 6387 25 31 0 0 chr1 481998 482030 -281711634 + GC_rich Low_complexity Low_complexity 1 32 0 21 82 0 0 chr1 482160 482209 -281711455 + GC_rich Low_complexity Low_complexity 1 49 0 245 146 31 73 chr1 482362 482458 -281711206 + C-rich Low_complexity Low_complexity 5 96 0 359 306 41 0 chr1 486143 486313 -281707351 + C-rich Low_complexity Low_complexity 3 179 0 300 247 45 45 chr1 486305 486483 -281707181 + (CCCCG)n Simple_repeat Simple_repeat 2 179 0 * 383 293 43 0 chr1 486389 486553 -281707111 + C-rich Low_complexity Low_complexity 3 173 0 349 301 43 0 chr1 486589 486752 -281706912 + C-rich Low_complexity Low_complexity 4 173 0 350 308 41 0 chr1 486783 486952 -281706712 + C-rich Low_complexity Low_complexity 4 179 0 291 222 11 83 chr1 487001 487181 -281706483 + CT-rich Low_complexity Low_complexity 1 167 0 * 343 317 37 0 chr1 487178 487342 -281706322 + C-rich Low_complexity Low_complexity 3 172 0 205 284 40 47 chr1 489248 489396 -281704268 + (CACG)n Simple_repeat Simple_repeat 4 150 0 234 261 6 68 chr1 489644 489820 -281703844 + (CA)n Simple_repeat Simple_repeat 1 165 0 209 60 40 40 chr1 494649 494699 -281698965 + (CCCCCG)n Simple_repeat Simple_repeat 4 53 0 305 106 211 7 chr1 495274 495416 -281698248 + (CAGCC)n Simple_repeat Simple_repeat 4 174 0 249 143 175 13 chr1 495436 495590 -281698074 + (CAGCC)n Simple_repeat Simple_repeat 1 179 0 1774 147 7 20 chr1 495746 496038 -281697626 + AluJo SINE Alu 3 290 -22 316 349 0 0 chr1 496694 496843 -281696821 + C-rich Low_complexity Low_complexity 1 149 0 229 113 0 38 chr1 496988 497041 -281696623 + (TCCCC)n Simple_repeat Simple_repeat 5 55 0 214 236 64 27 chr1 497450 497560 -281696104 - L2 LINE L2 -26 3246 3133 300 331 120 38 chr1 499703 499969 -281693695 + L2 LINE L2 3006 3293 -20 575 315 89 78 chr1 500748 500914 -281692750 - L1MEc LINE L1 -3603 2612 2449 1445 150 66 31 chr1 500914 501200 -281692464 - AluJb SINE Alu -15 297 2 575 315 89 78 chr1 501200 501407 -281692257 - L1MEc LINE L1 -3766 2449 2246 2247 39 3 43 chr1 501407 501712 -281691952 + AluY SINE Alu 1 293 -18 575 315 89 78 chr1 501712 501988 -281691676 - L1MEc LINE L1 -3969 2246 1390 2189 86 6 22 chr1 502155 502468 -281691196 - AluSq SINE Alu -5 308 1 737 104 104 49 chr1 502482 502626 -281691038 + FRAM SINE Alu 1 146 -30 2334 83 3 0 chr1 502630 502932 -281690732 - AluSx SINE Alu -8 304 2 1979 121 24 17 chr1 502971 503269 -281690395 - AluSq SINE Alu -13 300 1 1678 145 0 0 chr1 503274 503522 -281690142 - AluSx SINE Alu -10 302 55 187 176 0 54 chr1 503890 503964 -281689700 + C-rich Low_complexity Low_complexity 2 71 0 25 0 0 0 chr1 507441 507466 -281686198 + GC_rich Low_complexity Low_complexity 1 25 0 26 30 0 0 chr1 511097 511130 -281682534 + GC_rich Low_complexity Low_complexity 1 33 0 27 49 0 0 chr1 511446 511487 -281682177 + GC_rich Low_complexity Low_complexity 1 41 0 24 0 0 0 chr1 511601 511625 -281682039 + GC_rich Low_complexity Low_complexity 1 24 0 245 222 28 19 chr1 511705 511813 -281681851 + (CGCGG)n Simple_repeat Simple_repeat 4 112 0 23 0 0 0 chr1 512018 512041 -281681623 + GC_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr1 512100 512127 -281681537 + GC_rich Low_complexity Low_complexity 1 27 0 212 329 12 0 chr1 513031 513116 -281680548 + (TG)n Simple_repeat Simple_repeat 1 86 0 189 238 48 60 chr1 518005 518089 -281675575 - L2 LINE L2 -1002 2312 2230 1652 148 36 26 chr1 518224 518527 -281675137 + AluJo SINE Alu 1 306 -6 976 161 0 40 chr1 518540 518714 -281674950 + AluJb SINE Alu 128 294 -18 2133 103 17 0 chr1 518717 519019 -281674645 + AluSp SINE Alu 1 307 -6 264 325 26 13 chr1 522880 523031 -281670633 + (CGTG)n Simple_repeat Simple_repeat 4 156 0 211 235 12 37 chr1 525698 525779 -281667885 + (CCCCG)n Simple_repeat Simple_repeat 1 79 0 213 65 0 0 chr1 525791 525822 -281667842 + (CCCCG)n Simple_repeat Simple_repeat 4 34 0 202 183 0 84 chr1 525991 526062 -281667602 + G-rich Low_complexity Low_complexity 4 68 0 276 325 0 38 chr1 529516 529673 -281663991 + G-rich Low_complexity Low_complexity 5 155 0 279 116 52 64 chr1 529673 529845 -281663819 + (CAGAGA)n Simple_repeat Simple_repeat 1 170 0 280 125 56 56 chr1 529902 530227 -281663437 + (CAGAGA)n Simple_repeat Simple_repeat 1 325 0 207 122 58 70 chr1 530275 530447 -281663217 + (CAGAGA)n Simple_repeat Simple_repeat 1 170 0 180 77 0 0 chr1 532671 532697 -281660967 + (TGG)n Simple_repeat Simple_repeat 2 27 0 2157 119 3 0 chr1 534665 534968 -281658696 - AluSp SINE Alu -9 304 1 2448 57 0 0 chr1 535335 535632 -281658032 + AluY SINE Alu 3 299 -12 298 257 86 9 chr1 536127 536232 -281657432 + MIR SINE MIR 33 145 -117 1517 163 62 0 chr1 537596 537902 -281655762 + MER4B LTR ERV1 3 327 -283 2427 57 7 0 chr1 537902 538202 -281655462 - AluY SINE Alu -9 302 1 1010 80 0 29 chr1 538202 538340 -281655324 - AluSc SINE Alu -175 134 1 2551 152 14 42 chr1 538392 538684 -281654980 + MER4B-int LTR ERV1 238 512 -6246 2515 50 0 0 chr1 538684 538984 -281654680 + AluY SINE Alu 2 301 -10 2551 152 14 42 chr1 538984 539191 -281654473 + MER4B-int LTR ERV1 512 723 -6035 2504 163 60 88 chr1 539294 539592 -281654072 + MER4B-int LTR ERV1 698 1003 -5755 2204 112 0 0 chr1 539592 539896 -281653768 + AluSq SINE Alu 1 304 -9 2504 163 60 88 chr1 539896 539963 -281653701 + MER4B-int LTR ERV1 1003 1070 -5688 2021 139 0 0 chr1 539963 540258 -281653406 - AluSx SINE Alu -17 295 1 2504 163 60 88 chr1 540258 540541 -281653123 + MER4B-int LTR ERV1 1070 1359 -5399 2361 58 0 3 chr1 540541 540836 -281652828 - AluY SINE Alu -17 294 1 2504 163 60 88 chr1 540836 540963 -281652701 + MER4B-int LTR ERV1 1359 1488 -5270 2108 119 0 3 chr1 540963 541258 -281652406 + AluSx SINE Alu 1 294 -18 2504 163 60 88 chr1 541258 541606 -281652058 + MER4B-int LTR ERV1 1488 2256 -4502 2097 117 3 0 chr1 541610 541900 -281651764 + AluSx SINE Alu 4 294 -18 1263 164 9 0 chr1 541903 542129 -281651535 + MER4B-int LTR ERV1 6531 6758 0 2513 162 109 17 chr1 542129 542672 -281650992 + MER4B LTR ERV1 1 593 -17 22 0 0 0 chr1 544381 544403 -281649261 + GC_rich Low_complexity Low_complexity 1 22 0 30 0 0 0 chr1 544833 544863 -281648801 + GC_rich Low_complexity Low_complexity 1 30 0 983 162 29 17 chr1 546223 546380 -281647284 - AluSq SINE Alu -18 295 134 2341 99 3 0 chr1 546380 546692 -281646972 - AluSp SINE Alu 0 313 1 983 162 29 17 chr1 546692 546707 -281646957 - AluSq SINE Alu -179 134 121 2045 155 50 11 chr1 548134 548495 -281645169 - THE1C LTR MaLR 0 375 1 2212 98 0 13 chr1 548621 548927 -281644737 + AluSq SINE Alu 1 302 -11 1531 163 78 0 chr1 549419 549689 -281643975 + AluJb SINE Alu 12 302 -10 2256 81 0 0 chr1 551196 551504 -281642160 + AluSq SINE Alu 1 308 0 2214 80 7 20 chr1 551545 551845 -281641819 - AluY SINE Alu -15 296 1 856 89 0 0 chr1 551845 551957 -281641707 - AluSx SINE Alu -16 294 183 904 102 0 0 chr1 551957 552075 -281641589 - AluSx SINE Alu -195 118 1 2027 97 0 25 chr1 552454 552733 -281640931 + AluSc SINE Alu 3 274 -35 547 67 22 0 chr1 552735 552824 -281640840 + (CA)n Simple_repeat Simple_repeat 1 91 0 590 184 34 101 chr1 552875 553082 -281640582 - MER68 LTR ERV1 -211 351 159 1983 116 0 0 chr1 553496 553763 -281639901 - AluSx SINE Alu -45 267 1 1037 110 0 0 chr1 553763 553899 -281639765 - AluSq/x SINE Alu -177 136 1 1624 168 11 0 chr1 554387 554655 -281639009 - AluJo SINE Alu -19 293 23 2190 83 4 0 chr1 556232 556508 -281637156 + AluSp SINE Alu 1 277 -36 1464 90 24 14 chr1 556508 556720 -281636944 + AluY SINE Alu 68 281 -30 256 289 41 41 chr1 557207 557328 -281636336 + L2 LINE L2 1879 1999 -1315 794 218 45 1 chr1 558480 558842 -281634822 + MER54A LTR ERVL 489 895 -6 291 313 0 87 chr1 559002 559197 -281634467 + (CACG)n Simple_repeat Simple_repeat 1 178 0 376 289 12 36 chr1 559211 559377 -281634287 + (CACG)n Simple_repeat Simple_repeat 4 165 0 270 284 60 17 chr1 559546 559662 -281634002 - L2 LINE L2 -704 2610 2490 2455 35 6 19 chr1 560669 560980 -281632684 - AluY SINE Alu -4 307 1 768 287 0 0 chr1 563681 563817 -281629847 + C-rich Low_complexity Low_complexity 1 136 0 402 381 94 18 chr1 563820 564106 -281629558 - HAL1 LINE L1 -1306 1201 894 307 163 9 9 chr1 564699 564781 -281628883 - FLAM SINE Alu 0 133 58 2051 115 10 0 chr1 565018 565313 -281628351 + AluSx SINE Alu 1 298 -14 268 234 52 39 chr1 565481 565558 -281628106 - L2 LINE L2 -16 3256 3179 217 306 12 35 chr1 565650 565735 -281627929 - L2 LINE L2 -912 2402 2320 248 243 14 14 chr1 565834 565908 -281627756 + (TG)n Simple_repeat Simple_repeat 1 74 0 202 382 34 0 chr1 565991 566080 -281627584 - MIR SINE MIR -118 144 53 1604 134 12 78 chr1 566264 566585 -281627079 + AluJo SINE Alu 1 300 -12 217 320 0 29 chr1 568317 568489 -281625175 + (CCCG)n Simple_repeat Simple_repeat 3 169 0 629 257 27 9 chr1 569203 569425 -281624239 - L1MC3 LINE L1 -240 7545 7320 267 309 65 22 chr1 569551 569690 -281623974 - L1MC3 LINE L1 -936 6849 6705 225 198 79 8 chr1 569971 570097 -281623567 + (TG)n Simple_repeat Simple_repeat 1 135 0 301 226 71 0 chr1 570518 570602 -281623062 - MSTD LTR MaLR -291 105 16 1568 193 10 10 chr1 570850 571151 -281622513 - AluJb SINE Alu -11 301 1 2141 114 3 0 chr1 571202 571499 -281622165 + AluSx SINE Alu 1 298 -14 366 266 93 103 chr1 575164 575476 -281618188 + HAL1 LINE L1 985 1293 -1214 460 237 171 13 chr1 580253 580481 -281613183 - MLT1C LTR MaLR -203 264 1 221 292 62 31 chr1 581460 581556 -281612108 + MIR SINE MIR 34 132 -76 1473 154 67 4 chr1 584436 584703 -281608961 + AluJb SINE Alu 2 285 -27 1752 161 0 32 chr1 584728 584814 -281608850 - AluJb SINE Alu -11 301 214 6627 102 25 13 chr1 584814 585756 -281607908 - LTR13 LTR ERVK 0 954 1 1752 161 0 32 chr1 585756 585980 -281607684 - AluJb SINE Alu -98 214 1 638 89 0 30 chr1 585991 586092 -281607572 - AluSg/x SINE Alu -14 298 201 337 222 7 37 chr1 586369 586646 -281607018 + (TG)n Simple_repeat Simple_repeat 1 268 0 1398 213 45 0 chr1 587606 587893 -281605771 - AluJb SINE Alu -12 300 1 572 141 16 55 chr1 587901 588029 -281605635 - AluJb SINE Alu -1 311 189 730 206 32 74 chr1 588107 588296 -281605368 - AluJb SINE Alu -128 184 4 597 200 0 0 chr1 588489 588599 -281605065 - FLAM_C SINE Alu -33 110 1 29 0 0 0 chr1 592060 592089 -281601575 + GC_rich Low_complexity Low_complexity 1 29 0 293 204 157 0 chr1 594566 594661 -281599003 - MLT1B LTR MaLR -270 104 3 2086 108 10 0 chr1 594709 595005 -281598659 - AluSx SINE Alu -13 299 1 24 32 0 0 chr1 597772 597803 -281595861 + GC_rich Low_complexity Low_complexity 1 31 0 208 232 0 71 chr1 598229 598341 -281595323 + G-rich Low_complexity Low_complexity 1 104 0 243 261 159 23 chr1 599199 599287 -281594377 - L2 LINE L2 -4 3309 3210 404 292 134 38 chr1 599329 599538 -281594126 + L1M4 LINE L1 166 394 -6148 1249 173 4 27 chr1 599553 599687 -281593977 + AluJo SINE Alu 1 130 -182 1775 158 10 7 chr1 599687 599978 -281593686 + AluJo SINE Alu 1 292 -20 1249 173 4 27 chr1 599978 600068 -281593596 + AluJo SINE Alu 130 220 -92 278 106 0 0 chr1 600069 600116 -281593548 + AluSg/x SINE Alu 85 131 -169 1967 266 94 79 chr1 600122 600336 -281593328 + L1M4 LINE L1 1231 1440 -5204 1654 164 30 10 chr1 600336 600640 -281593024 + AluSx SINE Alu 1 310 -2 1967 266 94 79 chr1 600640 601455 -281592209 + L1M4 LINE L1 1440 2241 -4403 1506 208 17 10 chr1 601455 601743 -281591921 - AluJb SINE Alu -18 294 5 1967 266 94 79 chr1 601743 602095 -281591569 + L1M4 LINE L1 2241 2646 -3998 2297 83 3 0 chr1 602095 602396 -281591268 - AluY SINE Alu -9 302 1 1967 266 94 79 chr1 602396 602599 -281591065 + L1M4 LINE L1 2646 2844 -3800 2427 197 92 87 chr1 603057 603332 -281590332 + L1M4 LINE L1 2820 3092 -3552 3765 103 4 10 chr1 603332 603846 -281589818 + MER9 LTR ERVK 1 511 0 2427 197 92 87 chr1 603846 604000 -281589664 + L1M4 LINE L1 3092 3244 -3400 764 206 0 0 chr1 604000 604126 -281589538 - FLAM_A SINE Alu -3 130 5 2427 197 92 87 chr1 604126 604321 -281589343 + L1M4 LINE L1 3244 3436 -3208 2137 92 33 13 chr1 604321 604625 -281589039 + AluSq SINE Alu 1 310 -3 2427 197 92 87 chr1 604625 604785 -281588879 + L1M4 LINE L1 3436 3594 -3050 1621 126 0 8 chr1 604785 605023 -281588641 + AluSg/x SINE Alu 73 308 -2 2427 197 92 87 chr1 605023 605310 -281588354 + L1M4 LINE L1 3594 3900 -2744 2001 42 0 0 chr1 605310 605549 -281588115 - AluY SINE Alu -11 300 62 183 351 18 0 chr1 605974 606031 -281587633 - L2 LINE L2 -6 3307 3250 2099 89 0 20 chr1 610302 610594 -281583070 + AluSx SINE Alu 10 295 -17 1392 162 4 4 chr1 612027 612256 -281581408 - AluJo SINE Alu -83 229 1 1999 125 16 0 chr1 612291 612595 -281581069 + AluSx SINE Alu 1 309 -3 1182 114 17 0 chr1 621516 621692 -281571972 + AluJb SINE Alu 3 181 -131 2352 97 3 0 chr1 622920 623230 -281570434 + AluSq SINE Alu 2 312 -1 2236 68 4 0 chr1 623381 623660 -281570004 - AluY SINE Alu -31 280 1 606 258 76 28 chr1 624577 624931 -281568733 - MLT1B LTR MaLR 0 374 18 183 213 197 8 chr1 628698 628820 -281564844 + L2 LINE L2 2002 2146 -1168 238 203 7 115 chr1 630317 630465 -281563199 + (CAGGT)n Simple_repeat Simple_repeat 2 133 0 2276 96 0 0 chr1 636447 636748 -281556916 - AluSx SINE Alu -9 303 3 1865 137 0 7 chr1 636907 637192 -281556472 - AluJo SINE Alu -25 287 5 309 221 11 33 chr1 637459 637640 -281556024 + (CA)n Simple_repeat Simple_repeat 1 177 0 298 290 21 0 chr1 637653 637746 -281555918 + (CACG)n Simple_repeat Simple_repeat 3 97 0 280 245 7 7 chr1 637757 637896 -281555768 + (CA)n Simple_repeat Simple_repeat 1 139 0 185 108 27 0 chr1 638230 638267 -281555397 + G-rich Low_complexity Low_complexity 3 40 0 921 103 7 13 chr1 639000 639155 -281554509 + pTR5 LTR ERV1 239 392 -2046 403 71 36 0 chr1 639155 639211 -281554453 + Alu SINE Alu 235 292 -17 1763 127 0 4 chr1 639221 639354 -281554310 + AluSx SINE Alu 1 134 -178 1851 122 48 7 chr1 639354 639648 -281554016 + AluSg SINE Alu 5 310 0 929 150 19 12 chr1 639631 639791 -281553873 + AluJb SINE Alu 118 278 -34 1763 127 0 4 chr1 639648 639774 -281553890 + AluSx SINE Alu 134 259 -53 1012 110 0 0 chr1 639829 639965 -281553699 + AluSq/x SINE Alu 1 136 -176 2100 114 0 13 chr1 639965 640264 -281553400 + AluSg SINE Alu 1 295 -15 2493 33 0 16 chr1 640267 640570 -281553094 + AluY SINE Alu 4 301 -10 1688 149 23 13 chr1 642267 642568 -281551096 - AluJo SINE Alu -7 305 2 855 176 7 7 chr1 643511 643664 -281550000 - FRAM SINE Alu -13 153 1 539 241 134 19 chr1 643993 644209 -281549455 + L1MC/D LINE L1 5500 5740 -502 1948 101 39 26 chr1 644286 644594 -281549070 + AluSx SINE Alu 1 312 0 186 232 130 29 chr1 646610 646679 -281546985 - MIR SINE MIR -80 182 107 208 264 9 36 chr1 647477 647587 -281546077 + (CCCG)n Simple_repeat Simple_repeat 2 108 0 23 78 0 0 chr1 647904 647955 -281545709 + GC_rich Low_complexity Low_complexity 1 51 0 25 0 0 0 chr1 648020 648045 -281545619 + GC_rich Low_complexity Low_complexity 1 25 0 25 65 0 0 chr1 649181 649227 -281544437 + GC_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr1 649478 649499 -281544165 + GC_rich Low_complexity Low_complexity 1 21 0 2468 87 0 0 chr1 652071 652382 -281541282 - AluSx SINE Alu -1 311 1 293 67 0 0 chr1 652427 652472 -281541192 + AluSp/q SINE Alu 198 242 -61 200 161 0 0 chr1 652865 652896 -281540768 + G-rich Low_complexity Low_complexity 4 34 0 895 76 111 47 chr1 652951 653123 -281540541 - MER30 DNA MER1_type -47 183 1 21 36 0 0 chr1 653385 653413 -281540251 + GC_rich Low_complexity Low_complexity 1 28 0 228 279 0 0 chr1 666174 666235 -281527429 + G-rich Low_complexity Low_complexity 5 65 0 2108 96 4 0 chr1 666547 666868 -281526796 + AluSq SINE Alu 1 322 0 267 225 50 88 chr1 666873 667073 -281526591 + L1M4 LINE L1 2222 2413 -3733 1251 106 28 0 chr1 667299 667479 -281526185 + AluSg/x SINE Alu 115 299 -13 544 181 0 53 chr1 667495 667628 -281526036 + L1M4 LINE L1 4735 4860 -1286 2275 84 3 0 chr1 670265 670561 -281523103 + AluSg SINE Alu 3 299 -11 209 329 85 0 chr1 671072 671154 -281522510 - MIR SINE MIR -20 242 154 611 204 0 0 chr1 672423 672599 -281521065 + (TG)n Simple_repeat Simple_repeat 1 176 0 273 254 0 0 chr1 672610 672740 -281520924 + (TG)n Simple_repeat Simple_repeat 2 131 0 2154 100 0 0 chr1 672742 673023 -281520641 - AluY SINE Alu -16 295 15 231 148 19 0 chr1 673290 673344 -281520320 + L1MD3 LINE L1 7939 7993 -2 270 315 0 18 chr1 675585 675696 -281517968 + (CCCCG)n Simple_repeat Simple_repeat 2 110 0 236 152 22 0 chr1 677154 677200 -281516464 - MLT1C LTR MaLR -368 99 53 282 270 0 0 chr1 679521 679699 -281513965 + GA-rich Low_complexity Low_complexity 3 180 0 180 281 0 0 chr1 679712 679851 -281513813 + GA-rich Low_complexity Low_complexity 2 140 0 195 100 0 0 chr1 680440 680470 -281513194 + (CGGGG)n Simple_repeat Simple_repeat 1 30 0 2205 97 3 3 chr1 684731 685039 -281508625 - AluSg SINE Alu -2 308 1 488 206 6 24 chr1 688216 688386 -281505278 + G-rich Low_complexity Low_complexity 3 169 0 930 92 7 7 chr1 890028 890170 -281303494 + AluSp/q SINE Alu 169 310 -3 1703 108 13 0 chr1 890223 890455 -281303209 + AluSg SINE Alu 1 235 -75 180 0 0 0 chr1 890455 890475 -281303189 + (A)n Simple_repeat Simple_repeat 1 20 0 2536 62 0 0 chr1 890484 890792 -281302872 + AluY SINE Alu 1 308 -3 968 118 51 0 chr1 890794 890971 -281302693 + LTR10A LTR ERV1 376 609 0 506 81 0 40 chr1 890971 891045 -281302619 + Alu SINE Alu 221 291 -19 905 78 0 8 chr1 891047 891175 -281302489 + FLAM_C SINE Alu 1 127 -16 1525 179 26 23 chr1 891267 891435 -281302229 - AluSx SINE Alu -3 309 138 2099 111 3 3 chr1 891435 891732 -281301932 - AluSq SINE Alu -14 299 3 1525 179 26 23 chr1 891732 891871 -281301793 - AluSx SINE Alu -174 138 1 1963 111 28 7 chr1 891881 892170 -281301494 - AluSg SINE Alu -15 295 1 1206 163 80 73 chr1 892246 892546 -281301118 + AluJo SINE Alu 1 302 -10 250 203 47 31 chr1 895515 895579 -281298085 + L1MC3 LINE L1 7496 7560 -225 252 219 16 16 chr1 895642 895706 -281297958 + L1MC3 LINE L1 7709 7772 -13 * 1498 230 72 0 chr1 895705 896123 -281297541 + L1 LINE L1 3508 3955 -2191 934 92 0 0 chr1 896138 896258 -281297406 + AluSq/x SINE Alu 1 120 -192 849 226 76 4 chr1 896318 896593 -281297071 + L1 LINE L1 3949 4243 -1903 1811 133 10 43 chr1 896636 896793 -281296871 - AluSx SINE Alu -20 292 148 2200 102 0 3 chr1 896793 897097 -281296567 - AluSg SINE Alu -7 303 1 1811 133 10 43 chr1 897097 897241 -281296423 - AluSx SINE Alu -164 148 1 1856 147 10 0 chr1 897245 897544 -281296120 - AluSx SINE Alu -4 308 7 1647 190 0 0 chr1 897564 897843 -281295821 - AluJb SINE Alu -25 287 9 269 196 18 0 chr1 897941 897997 -281295667 + MLT1I LTR MaLR 353 409 0 1952 132 10 0 chr1 898212 898501 -281295163 - AluSc SINE Alu -17 292 1 1286 121 15 5 chr1 900693 900891 -281292773 + AluSq SINE Alu 1 200 -113 22 35 0 0 chr1 900891 900920 -281292744 + AT_rich Low_complexity Low_complexity 1 29 0 965 183 106 84 chr1 900931 900986 -281292678 + AluJb SINE Alu 14 66 -246 2076 114 0 0 chr1 900986 901276 -281292388 - AluSg SINE Alu -20 290 1 965 183 106 84 chr1 901276 901493 -281292171 + AluJb SINE Alu 66 292 -20 1687 143 4 8 chr1 901499 901757 -281291907 + AluSq SINE Alu 1 257 -56 2269 75 7 0 chr1 902250 902545 -281291119 - AluY SINE Alu -13 298 2 835 116 16 16 chr1 905141 905270 -281288394 + AluSp SINE Alu 13 141 -172 1961 112 10 17 chr1 905274 905570 -281288094 + AluY SINE Alu 1 294 -17 1747 122 3 91 chr1 905945 906265 -281287399 - AluSx SINE Alu -20 292 1 1417 152 24 110 chr1 906265 906599 -281287065 - AluSp SINE Alu -7 306 1 819 115 23 8 chr1 906613 906743 -281286921 - AluY SINE Alu -179 132 1 1201 171 15 0 chr1 906744 906949 -281286715 - AluJb SINE Alu -20 292 85 2057 114 0 10 chr1 908281 908578 -281285086 + AluSg SINE Alu 1 294 -16 216 0 0 0 chr1 909118 909142 -281284522 + (TG)n Simple_repeat Simple_repeat 2 25 0 383 279 0 53 chr1 909199 909389 -281284275 + (TG)n Simple_repeat Simple_repeat 1 180 0 315 238 17 0 chr1 909413 909585 -281284079 + (TG)n Simple_repeat Simple_repeat 2 176 0 494 279 6 6 chr1 909613 909792 -281283872 + (TG)n Simple_repeat Simple_repeat 1 179 0 318 339 6 27 chr1 909704 909887 -281283777 + (CGTG)n Simple_repeat Simple_repeat 1 179 0 * 1834 144 17 0 chr1 910845 911136 -281282528 + AluSx SINE Alu 1 296 -16 2076 79 18 0 chr1 911138 911464 -281282200 + AluSp SINE Alu 1 331 0 935 167 61 5 chr1 911918 912116 -281281548 + AluSg/x SINE Alu 85 293 -17 1346 149 0 0 chr1 912119 912327 -281281337 + AluSg/x SINE Alu 83 290 -20 2173 86 7 0 chr1 912334 912626 -281281038 + AluY SINE Alu 1 294 -17 1925 130 3 7 chr1 914341 914641 -281279023 + AluSx SINE Alu 1 299 -13 2347 65 13 0 chr1 914652 914959 -281278705 + AluY SINE Alu 1 311 0 516 231 0 0 chr1 914977 915085 -281278579 + FLAM_A SINE Alu 20 127 -15 1844 148 0 0 chr1 915348 915638 -281278026 + AluSc SINE Alu 1 290 -19 1108 39 0 0 chr1 915646 915773 -281277891 + AluY SINE Alu 9 135 -176 1850 50 50 0 chr1 915773 916011 -281277653 + AluY SINE Alu 60 309 -2 1831 110 41 10 chr1 916021 916313 -281277351 + AluSg SINE Alu 3 303 -7 189 0 0 0 chr1 917023 917044 -281276620 + (CCCCG)n Simple_repeat Simple_repeat 2 22 0 25 35 0 52 chr1 917157 917215 -281276449 + GC_rich Low_complexity Low_complexity 1 55 0 2137 158 140 0 chr1 917766 917905 -281275759 + LTR10A LTR ERV1 1 119 -490 1829 135 204 13 chr1 917905 918283 -281275381 - LTR7 LTR ERV1 0 450 1 2137 158 140 0 chr1 918283 918623 -281275041 + LTR10A LTR ERV1 119 547 -62 489 134 24 0 chr1 918642 918724 -281274940 + Alu SINE Alu 228 311 0 1863 129 13 26 chr1 918729 918940 -281274724 + AluSx SINE Alu 1 208 -104 1495 182 102 62 chr1 918940 919373 -281274291 - LTR7 LTR ERV1 0 450 1 1863 129 13 26 chr1 919373 919464 -281274200 + AluSx SINE Alu 208 299 -13 842 102 16 23 chr1 919466 919594 -281274070 + FLAM_C SINE Alu 1 127 -16 854 200 0 25 chr1 919677 919837 -281273827 - AluSg/x SINE Alu -17 293 138 1700 123 22 75 chr1 919837 920155 -281273509 - AluSq SINE Alu -12 301 1 250 203 47 31 chr1 921958 922022 -281271642 + L1MC3 LINE L1 7496 7560 -225 292 169 31 15 chr1 922084 922149 -281271515 + L1MD3 LINE L1 7920 7985 -10 2856 218 55 52 chr1 922150 922584 -281271080 + L1 LINE L1 3510 3941 -2205 1968 92 58 20 chr1 922584 922876 -281270788 - AluY SINE Alu -8 303 1 1805 113 4 0 chr1 922877 923133 -281270531 - AluSp SINE Alu -8 305 49 2856 218 55 52 chr1 923133 923525 -281270139 + L1 LINE L1 3941 4330 -1816 2431 72 7 0 chr1 923525 923832 -281269832 - AluY SINE Alu -2 309 1 2856 218 55 52 chr1 923832 923953 -281269711 + L1 LINE L1 4330 4449 -1697 2182 95 0 10 chr1 923953 924258 -281269406 + AluSx SINE Alu 1 302 -10 2856 218 55 52 chr1 924258 924392 -281269272 + L1 LINE L1 4449 4679 -1467 1964 100 0 0 chr1 924392 924652 -281269012 - AluSx SINE Alu -51 261 2 2856 218 55 52 chr1 924652 924687 -281268977 + L1 LINE L1 4679 4712 -1434 281 261 203 7 chr1 924729 924867 -281268797 + MLT1A1 LTR MaLR 128 292 -73 1971 121 10 10 chr1 924917 925207 -281268457 - AluSx SINE Alu -10 302 13 1554 206 0 13 chr1 925215 925516 -281268148 - AluJb SINE Alu -15 297 1 296 161 18 0 chr1 925603 925659 -281268005 + MLT1I LTR MaLR 353 409 0 2054 126 0 0 chr1 927654 927948 -281265716 + AluSq SINE Alu 1 294 -19 2087 100 3 32 chr1 928761 929072 -281264592 + AluSp SINE Alu 1 302 -11 1860 134 20 0 chr1 930123 930415 -281263249 + AluSx SINE Alu 1 298 -14 780 191 0 14 chr1 930421 930562 -281263102 + AluJb SINE Alu 3 141 -171 1904 123 17 17 chr1 930562 930855 -281262809 + AluSp SINE Alu 1 293 -20 1892 155 0 7 chr1 930861 931164 -281262500 + AluSx SINE Alu 1 301 -11 1885 136 4 0 chr1 931166 931469 -281262195 + AluSc SINE Alu 1 304 0 2455 64 0 6 chr1 931518 931829 -281261835 - AluY SINE Alu -2 309 1 2475 65 0 7 chr1 933898 934208 -281259456 - AluY SINE Alu -3 308 1 2059 125 0 3 chr1 935201 935498 -281258166 + AluSp SINE Alu 1 296 -17 940 134 0 0 chr1 935506 935640 -281258024 + AluSq/x SINE Alu 2 135 -178 1796 159 3 0 chr1 935640 935936 -281257728 + AluSx SINE Alu 1 297 -15 302 271 68 0 chr1 936196 936314 -281257350 - HUERS-P1 LTR ERV1 -3861 2402 2277 1078 129 6 0 chr1 936314 936477 -281257187 - AluSc SINE Alu 0 309 146 2157 116 3 0 chr1 937496 937798 -281255866 + AluSx SINE Alu 1 303 -9 2160 82 21 7 chr1 937806 938097 -281255567 + AluY SINE Alu 1 295 -16 2329 58 17 0 chr1 938800 939094 -281254570 - AluY SINE Alu -11 300 2 1380 186 69 9 chr1 939409 939743 -281253921 + Harlequin LTR ERV1 1378 1731 -4918 578 140 26 88 chr1 939730 940070 -281253594 + Harlequin LTR ERV1 704 1136 -5760 * 1883 121 24 17 chr1 940071 940369 -281253295 + AluY SINE Alu 2 301 -10 1302 158 3 81 chr1 940440 940549 -281253115 + Harlequin LTR ERV1 4187 4303 -3482 1998 113 0 53 chr1 940549 940869 -281252795 + AluSx SINE Alu 1 303 -9 1302 158 3 81 chr1 940869 941003 -281252661 + Harlequin LTR ERV1 4303 4404 -3381 2557 50 0 0 chr1 941003 941304 -281252360 - AluY SINE Alu -10 301 1 1302 158 3 81 chr1 941304 941369 -281252295 + Harlequin LTR ERV1 4404 4472 -3313 579 131 0 0 chr1 941336 941435 -281252229 + Harlequin LTR ERV1 1611 1709 -5187 * 2120 115 3 3 chr1 941435 941739 -281251925 + AluSx SINE Alu 1 304 -8 2386 65 20 0 chr1 941739 942033 -281251631 + AluY SINE Alu 1 300 -11 1016 115 48 0 chr1 942033 942220 -281251444 + LTR10A LTR ERV1 366 609 0 484 95 0 40 chr1 942220 942294 -281251370 + Alu SINE Alu 221 291 -19 894 78 0 8 chr1 942296 942424 -281251240 + FLAM_C SINE Alu 1 127 -16 1544 175 26 23 chr1 942516 942684 -281250980 - AluSx SINE Alu -3 309 138 2130 104 3 3 chr1 942684 942981 -281250683 - AluSq SINE Alu -14 299 3 1544 175 26 23 chr1 942981 943120 -281250544 - AluSx SINE Alu -174 138 1 1949 119 27 7 chr1 943129 943423 -281250241 - AluSg SINE Alu -10 300 1 1206 163 80 73 chr1 943499 943799 -281249865 + AluJo SINE Alu 1 302 -10 674 197 16 8 chr1 945012 945139 -281248525 + FLAM_C SINE Alu 1 128 -5 1875 153 33 0 chr1 945143 945468 -281248196 + AluJb SINE Alu 2 336 0 1945 113 25 0 chr1 945470 945745 -281247919 + AluSx SINE Alu 1 282 -30 2301 46 0 3 chr1 945899 946208 -281247456 + AluY SINE Alu 1 308 0 28 61 0 0 chr1 949375 949424 -281244240 + GC_rich Low_complexity Low_complexity 1 49 0 215 170 38 0 chr1 953177 953230 -281240434 + (CCCG)n Simple_repeat Simple_repeat 1 55 0 23 0 0 0 chr1 953291 953314 -281240350 + GC_rich Low_complexity Low_complexity 1 23 0 216 0 0 0 chr1 953423 953447 -281240217 + (CTCG)n Simple_repeat Simple_repeat 1 24 0 202 205 26 39 chr1 956059 956137 -281237527 + (CGGGG)n Simple_repeat Simple_repeat 2 78 0 25 0 0 0 chr1 958402 958427 -281235237 + GC_rich Low_complexity Low_complexity 1 25 0 335 305 58 39 chr1 958942 959096 -281234568 + L1MEd LINE L1 14 170 -5949 1803 148 14 0 chr1 959099 959389 -281234275 + AluJb SINE Alu 1 294 -18 408 310 96 11 chr1 959588 959859 -281233805 + L1MEd LINE L1 620 913 -5206 916 208 0 0 chr1 959896 960055 -281233609 - AluJo/FRAM SINE Alu -7 295 137 1244 134 0 0 chr1 960058 960237 -281233427 - AluSq SINE Alu -1 312 134 2298 73 3 3 chr1 960237 960538 -281233126 - AluY SINE Alu -10 301 1 341 176 0 12 chr1 961042 961127 -281232537 + C-rich Low_complexity Low_complexity 5 88 0 253 181 6 66 chr1 961236 961402 -281232262 + G-rich Low_complexity Low_complexity 3 158 0 287 304 6 39 chr1 961473 961654 -281232010 + GA-rich Low_complexity Low_complexity 2 176 0 * 320 291 0 39 chr1 961529 961711 -281231953 + G-rich Low_complexity Low_complexity 4 178 0 2065 97 7 20 chr1 963238 963538 -281230126 - AluSc SINE Alu -13 296 1 1643 180 3 3 chr1 963617 963906 -281229758 - AluJb SINE Alu -22 290 2 2239 115 0 6 chr1 963967 964279 -281229385 - AluSq SINE Alu -3 310 1 1038 104 0 0 chr1 964496 964631 -281229033 + AluSq/x SINE Alu 2 136 -177 2014 119 3 22 chr1 964631 964943 -281228721 + AluSx SINE Alu 1 306 -6 1864 143 20 3 chr1 964946 965240 -281228424 + AluSx SINE Alu 1 299 -13 229 200 20 0 chr1 965297 965347 -281228317 - L2 LINE L2 -2 3270 3220 3119 152 56 2 chr1 965353 965946 -281227718 - MER41B LTR ERV1 -7 628 4 372 234 80 7 chr1 966068 966205 -281227459 + REP3 LTR ERV 122 268 -294 272 248 76 19 chr1 966232 966337 -281227327 - L2 LINE L2 -101 3212 3102 208 203 0 94 chr1 968013 968077 -281225587 + (CGGGG)n Simple_repeat Simple_repeat 1 58 0 21 0 0 0 chr1 968464 968485 -281225179 + GC_rich Low_complexity Low_complexity 1 21 0 3928 32 42 11 chr1 969866 970341 -281223323 + LTR2B LTR ERV1 1 490 0 5980 85 20 6 chr1 970341 971228 -281222436 + Harlequin LTR ERV1 1 900 -5996 5770 61 44 11 chr1 971214 971647 -281222017 + Harlequin LTR ERV1 1572 1989 -4907 * 2640 27 0 0 chr1 971647 971948 -281221716 - AluY SINE Alu -10 301 1 5770 61 44 11 chr1 971948 972485 -281221179 + Harlequin LTR ERV1 1989 2574 -4322 * 21774 119 15 7 chr1 972484 975997 -281217667 + Harlequin LTR ERV1 3352 6895 -1 3773 47 47 4 chr1 975997 976467 -281217197 + LTR2B LTR ERV1 1 490 0 225 289 87 59 chr1 976551 976867 -281216797 - L1M3e LINE L1 -5486 1544 656 646 268 36 54 chr1 977050 977180 -281216484 + MER74B LTR ERVL 211 342 -280 2284 104 0 0 chr1 977180 977487 -281216177 - AluY SINE Alu -4 307 1 2204 101 0 3 chr1 977487 977785 -281215879 - AluSq SINE Alu -16 297 1 646 268 36 54 chr1 977785 977945 -281215719 + MER74B LTR ERVL 341 498 -124 8041 57 2 0 chr1 977945 978912 -281214752 - LTR5 LTR ERVK 0 969 1 646 268 36 54 chr1 978912 978955 -281214709 + MER74B LTR ERVL 498 540 -82 1256 153 157 0 chr1 979030 979266 -281214398 + AluJb SINE Alu 21 293 -19 1755 131 75 0 chr1 979270 979552 -281214112 - AluSx SINE Alu -9 303 1 851 85 15 31 chr1 979555 979685 -281213979 - AluSp/q SINE Alu -19 294 167 1728 130 0 0 chr1 979702 979956 -281213708 + AluSx SINE Alu 59 312 0 304 214 208 45 chr1 980060 980238 -281213426 + L1MC4 LINE L1 7772 7978 -64 1670 143 0 21 chr1 980430 980717 -281212947 - AluJb SINE Alu -17 295 15 340 170 119 6 chr1 980765 981001 -281212663 + AluSg SINE Alu 6 301 0 26 82 0 0 chr1 981082 981143 -281212521 + GC_rich Low_complexity Low_complexity 1 61 0 23 0 0 0 chr1 981644 981667 -281211997 + GC_rich Low_complexity Low_complexity 1 23 0 1885 140 20 0 chr1 982352 982645 -281211019 - AluSx SINE Alu -13 299 1 298 211 53 0 chr1 982648 982724 -281210940 - AluJ/FRAM SINE Alu 0 302 223 1633 182 19 0 chr1 982966 983273 -281210391 + 7SLRNA srpRNA srpRNA 1 313 -7 787 193 12 30 chr1 983273 983439 -281210225 + AluJo/FRAM SINE Alu 134 296 -16 1899 121 46 0 chr1 983444 983725 -281209939 + AluSg SINE Alu 1 294 -16 1911 122 4 0 chr1 983947 984225 -281209439 + AluY SINE Alu 28 306 -5 2395 69 0 3 chr1 984265 984571 -281209093 + AluY SINE Alu 1 305 -6 1551 167 20 30 chr1 984574 984873 -281208791 + AluSx SINE Alu 1 296 -16 2287 93 3 0 chr1 985177 985477 -281208187 + AluY SINE Alu 1 301 -10 2108 123 3 3 chr1 985563 985872 -281207792 - AluY SINE Alu -2 309 1 918 98 15 8 chr1 985884 986016 -281207648 - AluSp SINE Alu -180 133 1 219 167 42 21 chr1 987719 987767 -281205897 - L3 LINE CR1 -917 660 612 189 0 0 0 chr1 989414 989435 -281204229 + (CGG)n Simple_repeat Simple_repeat 2 22 0 278 238 24 12 chr1 989783 989867 -281203797 + (CCCCAG)n Simple_repeat Simple_repeat 6 90 0 609 196 43 43 chr1 990798 990842 -281202822 - MER20 DNA MER1_type 0 219 176 1504 195 17 14 chr1 990842 991139 -281202525 - AluJo SINE Alu -14 298 1 609 196 43 43 chr1 991139 991257 -281202407 - MER20 DNA MER1_type -42 177 57 814 215 6 0 chr1 991262 991420 -281202244 + FRAM SINE Alu 2 160 -16 2064 103 3 10 chr1 991557 991672 -281201992 + AluSq SINE Alu 21 135 -178 2471 43 7 3 chr1 991672 991972 -281201692 + AluY SINE Alu 1 301 -10 2064 103 3 10 chr1 991972 992147 -281201517 + AluSq SINE Alu 135 309 -4 2171 109 3 0 chr1 992154 992448 -281201216 + AluSx SINE Alu 2 296 -16 347 100 0 0 chr1 992458 992508 -281201156 - Alu SINE Alu -251 50 1 2101 96 6 38 chr1 992509 992822 -281200842 - AluSx SINE Alu -9 303 1 2044 116 0 23 chr1 993632 993942 -281199722 - AluSc SINE Alu -6 303 1 2270 117 0 0 chr1 993942 994251 -281199413 - AluSx SINE Alu -3 309 1 2141 105 7 0 chr1 994578 994874 -281198790 - AluSx SINE Alu -14 298 1 1439 178 14 51 chr1 998585 998750 -281194914 - AluJo SINE Alu -10 302 151 2196 93 7 0 chr1 998750 999041 -281194623 - AluY SINE Alu -18 293 1 1439 178 14 51 chr1 999041 999168 -281194496 - AluJo SINE Alu -161 151 21 1780 78 13 0 chr1 999339 999570 -281194094 - AluY SINE Alu -19 292 59 259 281 133 10 chr1 1199798 1200111 -280993553 + L1ME LINE L1 5265 5613 -508 2142 205 16 5 chr1 1200115 1200670 -280992994 + L1M4 LINE L1 3872 4432 -1714 257 362 0 0 chr1 1206111 1206288 -280987376 + G-rich Low_complexity Low_complexity 1 177 0 241 237 41 21 chr1 1207697 1207794 -280985870 - L1MC5 LINE L1 -32 7929 7831 428 269 47 0 chr1 1208074 1208223 -280985441 + MER58C DNA MER1_type 40 195 -20 354 331 40 20 chr1 1209460 1209608 -280984056 + MIR SINE MIR 9 159 -103 284 271 75 45 chr1 1209627 1209760 -280983904 - MIR SINE MIR -75 187 51 472 325 97 21 chr1 1210481 1210704 -280982960 + MIR SINE MIR 3 228 -28 268 293 187 8 chr1 1210773 1211019 -280982645 + L2 LINE L2 3015 3304 -9 35 71 0 0 chr1 1212187 1212257 -280981407 + GC_rich Low_complexity Low_complexity 1 70 0 2024 76 14 4 chr1 1213259 1213534 -280980130 + AluSx SINE Alu 21 298 -14 1927 144 3 0 chr1 1214717 1215015 -280978649 + AluSx SINE Alu 1 299 -13 2247 109 0 3 chr1 1215149 1215460 -280978204 - AluSq SINE Alu -3 310 1 379 193 9 9 chr1 1215567 1215676 -280977988 + GA-rich Low_complexity Low_complexity 4 112 0 2328 100 0 0 chr1 1215974 1216283 -280977381 - AluSq SINE Alu -4 309 1 1327 164 13 4 chr1 1216304 1216529 -280977135 - AluJb SINE Alu -1 311 85 231 293 35 17 chr1 1217922 1218038 -280975626 - MLT1H LTR MaLR -16 533 416 259 250 0 0 chr1 1218157 1218221 -280975443 - MLT1H LTR MaLR -375 174 111 2125 120 7 0 chr1 1218380 1218688 -280974976 + AluSx SINE Alu 1 310 -2 1327 213 161 20 chr1 1220309 1220718 -280972946 - MER34C LTR ERV1 -83 502 36 324 314 48 0 chr1 1220790 1220914 -280972750 - L2 LINE L2 -770 2544 2415 295 311 9 0 chr1 1221535 1221641 -280972023 + ERVL LTR ERVL 484 590 -5174 365 341 28 17 chr1 1221840 1222019 -280971645 - LTR41 LTR ERVL -590 183 3 213 311 212 0 chr1 1222669 1222801 -280970863 - MIR SINE MIR -23 239 80 1852 140 3 41 chr1 1224255 1224569 -280969095 + AluJo SINE Alu 1 302 -10 682 161 62 8 chr1 1224623 1224753 -280968911 - AluJo SINE Alu -175 137 1 1726 258 77 31 chr1 1224754 1225408 -280968256 - L1MB3 LINE L1 -46 6137 5454 266 333 17 8 chr1 1232813 1232930 -280960734 + (TG)n Simple_repeat Simple_repeat 1 118 0 2132 210 17 15 chr1 1232946 1233185 -280960479 - L1MB7 LINE L1 -345 5839 5602 2166 95 14 0 chr1 1233185 1233481 -280960183 - AluSp SINE Alu -13 300 1 2132 210 17 15 chr1 1233481 1233765 -280959899 - L1MB7 LINE L1 -582 5602 5315 509 163 0 0 chr1 1233778 1233858 -280959806 + AluJ/FLAM SINE Alu 1 80 -232 297 68 0 0 chr1 1233865 1233909 -280959755 + (TTG)n Simple_repeat Simple_repeat 2 45 0 842 199 0 0 chr1 1246248 1246404 -280947260 + FRAM SINE Alu 1 156 -20 1588 248 71 92 chr1 1246733 1247110 -280946554 + L1MB7 LINE L1 5098 5481 -703 1686 141 0 57 chr1 1247110 1247408 -280946256 - AluJb SINE Alu -17 295 15 1588 248 71 92 chr1 1247408 1248142 -280945522 + L1MB7 LINE L1 5481 6184 0 182 326 0 0 chr1 1251062 1251105 -280942559 + L2 LINE L2 3225 3267 -5 309 258 28 66 chr1 1253910 1254092 -280939572 + (CCCTG)n Simple_repeat Simple_repeat 5 179 0 949 134 0 0 chr1 1255139 1255273 -280938391 + AluSq/x SINE Alu 2 135 -177 2219 113 6 0 chr1 1255273 1255584 -280938080 + AluSp SINE Alu 1 313 0 1864 28 0 0 chr1 1256006 1256221 -280937443 + AluY SINE Alu 83 297 -14 362 258 33 46 chr1 1256577 1256728 -280936936 + MER45B DNA AcHobo 69 217 -823 435 233 27 82 chr1 1256905 1257051 -280936613 + MER45B DNA AcHobo 648 785 -255 231 188 0 0 chr1 1257048 1257096 -280936568 - Alu SINE Alu -3 299 252 * 2230 74 0 17 chr1 1257199 1257498 -280936166 - AluY SINE Alu -17 294 1 1262 157 0 65 chr1 1257499 1257760 -280935904 + AluJb SINE Alu 68 311 -1 2519 262 38 39 chr1 1257771 1258951 -280934713 - L1MB7 LINE L1 -841 5305 4172 1365 190 90 46 chr1 1258969 1259041 -280934623 - L1M4 LINE L1 -630 5623 5556 2109 113 0 10 chr1 1259041 1259352 -280934312 - AluY SINE Alu -3 308 1 2155 101 0 3 chr1 1259352 1259639 -280934025 - AluSc SINE Alu -17 292 7 1365 190 90 46 chr1 1259639 1259787 -280933877 - L1M4 LINE L1 -697 5556 5416 2332 189 97 5 chr1 1259787 1260231 -280933433 + MER66B LTR ERV1 2 486 0 1365 190 90 46 chr1 1260231 1260493 -280933171 - L1M4 LINE L1 -837 5416 5096 1947 107 46 7 chr1 1260493 1260774 -280932890 + AluSq SINE Alu 1 292 -21 1365 190 90 46 chr1 1260774 1260937 -280932727 - L1M4 LINE L1 -1157 5096 4942 927 146 0 0 chr1 1260954 1261084 -280932580 - FLAM_C SINE Alu -3 130 1 228 67 0 0 chr1 1261084 1261114 -280932550 + (T)n Simple_repeat Simple_repeat 1 30 0 723 188 17 23 chr1 1261139 1261315 -280932349 - L1M4 LINE L1 -2386 3829 3655 387 230 119 16 chr1 1261315 1261441 -280932223 - L1M4 LINE L1 -3446 2769 2631 331 221 35 0 chr1 1261499 1261585 -280932079 - L1M4 LINE L1 -3541 2674 2586 2015 136 0 38 chr1 1261586 1261902 -280931762 + AluSx SINE Alu 2 305 -7 6091 27 1 0 chr1 1261934 1262721 -280930943 - L1PA3 LINE L1 -3 6152 5365 * 10525 24 9 0 chr1 1262713 1264094 -280929570 + L1PA3 LINE L1 4003 5396 -750 2947 264 114 50 chr1 1264091 1264608 -280929056 - L1MEc LINE L1 -3632 2583 2101 * 210 37 0 0 chr1 1264608 1264635 -280929029 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1904 136 7 27 chr1 1264645 1264946 -280928718 - AluJo SINE Alu -17 295 1 2947 264 114 50 chr1 1264946 1265537 -280928127 - L1MEc LINE L1 -4122 2093 1541 1806 94 0 12 chr1 1265537 1265781 -280927883 - AluSx SINE Alu -10 302 62 2947 264 114 50 chr1 1265781 1265982 -280927682 - L1MEc LINE L1 -4674 1541 1354 2345 162 27 39 chr1 1265982 1266174 -280927490 + Tigger2a DNA MER2_type 1 194 -2514 2170 96 10 0 chr1 1266174 1266467 -280927197 - AluSg SINE Alu -12 298 3 2345 162 27 39 chr1 1266467 1266713 -280926951 + Tigger2a DNA MER2_type 194 434 0 2947 264 114 50 chr1 1266713 1266822 -280926842 - L1MEc LINE L1 -4861 1354 1253 2136 110 7 3 chr1 1266822 1267146 -280926518 - AluSx SINE Alu 0 312 1 2947 264 114 50 chr1 1267146 1268118 -280925546 - L1MEc LINE L1 -4962 1253 55 2050 119 10 10 chr1 1268508 1268820 -280924844 - AluSx SINE Alu 0 312 1 255 259 0 0 chr1 1269096 1269150 -280924514 - L2 LINE L2 -8 3264 3211 23 0 0 0 chr1 1273134 1273157 -280920507 + GC_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr1 1273324 1273352 -280920312 + GC_rich Low_complexity Low_complexity 1 28 0 322 250 0 0 chr1 1273639 1273703 -280919961 + MIR SINE MIR 103 166 -96 1703 126 0 8 chr1 1273863 1274118 -280919546 - AluJb SINE Alu -39 273 21 1120 101 0 0 chr1 1274269 1274418 -280919246 - AluSq/x SINE Alu -163 149 1 300 326 47 0 chr1 1276059 1276188 -280917476 - MLT1J LTR MaLR -139 372 238 413 306 31 12 chr1 1276408 1276568 -280917096 - MLT1J LTR MaLR -139 372 210 330 320 0 0 chr1 1279860 1279960 -280913704 + (TG)n Simple_repeat Simple_repeat 1 100 0 526 223 23 0 chr1 1279977 1280152 -280913512 + (CGTG)n Simple_repeat Simple_repeat 1 179 0 229 154 39 0 chr1 1280268 1280320 -280913344 + L1MC4a LINE L1 6720 6773 -1035 517 351 4 9 chr1 1280467 1280698 -280912966 + L1MC4 LINE L1 7435 7664 -378 2235 98 0 0 chr1 1282090 1282396 -280911268 + AluSx SINE Alu 5 310 -2 400 132 15 15 chr1 1282420 1282488 -280911176 - FRAM SINE Alu -81 95 28 234 0 0 0 chr1 1282916 1282942 -280910722 + (TG)n Simple_repeat Simple_repeat 1 26 0 244 183 50 0 chr1 1284760 1284820 -280908844 + (CCCCAG)n Simple_repeat Simple_repeat 6 68 0 735 148 15 37 chr1 1285741 1285968 -280907696 + FLAM_C SINE Alu 6 143 0 2260 95 10 0 chr1 1287051 1287356 -280906308 - AluSc SINE Alu -1 308 1 183 353 88 48 chr1 1288064 1288313 -280905351 - L2 LINE L2 -536 2778 2520 239 311 83 67 chr1 1288989 1289301 -280904363 - L2 LINE L2 -572 2742 2426 375 245 5 54 chr1 1296772 1296956 -280896708 + G-rich Low_complexity Low_complexity 6 180 0 425 321 87 60 chr1 1301239 1301808 -280891856 - L1 LINE L1 -2694 4154 1499 1564 143 112 28 chr1 1302872 1303159 -280890505 + AluJb SINE Alu 1 311 -1 880 220 31 135 chr1 1303170 1303497 -280890167 + AluYb8 SINE Alu 25 317 -1 370 55 36 0 chr1 1303497 1303552 -280890112 + (GA)n Simple_repeat Simple_repeat 1 57 0 614 99 12 56 chr1 1303552 1303714 -280889950 + (GGAA)n Simple_repeat Simple_repeat 4 158 0 295 128 12 47 chr1 1303834 1303920 -280889744 + GA-rich Low_complexity Low_complexity 3 85 0 183 213 0 0 chr1 1311776 1311851 -280881813 + GA-rich Low_complexity Low_complexity 2 76 0 240 35 0 0 chr1 1313710 1313739 -280879925 + (CCCCCG)n Simple_repeat Simple_repeat 5 33 0 258 281 0 0 chr1 1313789 1313853 -280879811 + G-rich Low_complexity Low_complexity 1 64 0 932 89 0 0 chr1 1316851 1316975 -280876689 - AluSq/x SINE Alu -189 124 1 1902 120 3 30 chr1 1321301 1321602 -280872062 - AluSg SINE Alu -17 293 1 238 143 0 48 chr1 1321702 1321744 -280871920 + MER5A DNA MER1_type 110 149 -40 688 176 7 44 chr1 1321835 1321971 -280871693 + FLAM_C SINE Alu 1 131 -2 311 247 93 33 chr1 1322972 1323122 -280870542 + MLT1A1 LTR MaLR 95 253 -112 263 330 6 34 chr1 1323717 1323959 -280869705 + (CGTG)n Simple_repeat Simple_repeat 1 235 0 2395 78 6 3 chr1 1324058 1324404 -280869260 - THE1A LTR MaLR -8 347 1 758 135 0 0 chr1 1324404 1324508 -280869156 + AluSp SINE Alu 110 213 -100 2308 59 7 0 chr1 1325884 1326174 -280867490 + AluY SINE Alu 7 298 -13 1622 181 26 29 chr1 1332445 1332755 -280860909 + AluJo SINE Alu 1 309 -3 321 308 22 0 chr1 1332759 1332850 -280860814 + GA-rich Low_complexity Low_complexity 4 96 0 2090 280 108 22 chr1 1335011 1335697 -280857967 + L1MC4 LINE L1 366 1184 -5537 2108 136 0 3 chr1 1335697 1336007 -280857657 - AluJb SINE Alu -3 309 1 2090 280 108 22 chr1 1336007 1336426 -280857238 + L1MC4 LINE L1 1184 1566 -5155 2230 99 3 3 chr1 1336580 1336892 -280856772 + AluSx SINE Alu 1 312 0 737 168 23 15 chr1 1336990 1337121 -280856543 + AluJb SINE Alu 1 132 -180 1986 107 3 31 chr1 1337123 1337442 -280856222 + AluSg SINE Alu 1 310 0 227 219 122 12 chr1 1337457 1337539 -280856125 + L1MC4 LINE L1 1873 1963 -4577 923 130 0 0 chr1 1337666 1337797 -280855867 - FLAM_C SINE Alu -2 131 1 701 196 30 60 chr1 1337806 1337974 -280855690 - AluSg/x SINE Alu -12 298 136 943 241 106 75 chr1 1337981 1338157 -280855507 + L1MC4 LINE L1 3945 4114 -2426 2162 111 3 0 chr1 1338157 1338454 -280855210 + AluSx SINE Alu 4 301 -11 943 241 106 75 chr1 1338454 1338488 -280855176 + L1MC4 LINE L1 4114 4145 -2395 2073 130 3 3 chr1 1338488 1338795 -280854869 + AluSx SINE Alu 1 307 -5 943 241 106 75 chr1 1338795 1339131 -280854533 + L1MC4 LINE L1 4145 4509 -2031 2230 256 63 20 chr1 1339860 1340850 -280852814 + L1MC4 LINE L1 4457 5404 -1154 2027 145 7 0 chr1 1340850 1341160 -280852504 + AluJb SINE Alu 1 312 0 2230 256 63 20 chr1 1341160 1342152 -280851512 + L1MC4 LINE L1 5404 6558 0 608 289 11 21 chr1 1342364 1342551 -280851113 - MER58A DNA MER1_type 0 224 40 466 272 68 0 chr1 1342553 1342700 -280850964 + MER5A DNA MER1_type 24 180 -9 2031 116 20 0 chr1 1342845 1343139 -280850525 + AluSg SINE Alu 2 301 -9 2062 122 3 0 chr1 1343649 1343977 -280849687 + AluSp SINE Alu 1 313 0 735 352 153 16 chr1 1344368 1345013 -280848651 + HAL1 LINE L1 828 1561 -946 1924 148 0 3 chr1 1348575 1348872 -280844792 - AluSx SINE Alu -16 296 1 791 155 8 0 chr1 1350266 1350395 -280843269 + AluJo SINE Alu 5 134 -178 342 358 102 20 chr1 1350968 1351222 -280842442 + L1MC4 LINE L1 7768 8042 0 2188 86 7 3 chr1 1351478 1351770 -280841894 + AluSx SINE Alu 1 293 -19 2257 100 7 0 chr1 1354444 1354743 -280838921 - AluSg SINE Alu -9 301 1 2667 217 68 19 chr1 1355268 1355589 -280838075 + L1MB3 LINE L1 5258 5562 -621 2140 129 3 0 chr1 1355589 1355900 -280837764 + AluSx SINE Alu 1 312 0 2084 133 0 10 chr1 1355910 1356219 -280837445 + AluSx SINE Alu 1 306 -6 2667 217 68 19 chr1 1356219 1356641 -280837023 + L1MB3 LINE L1 5570 6049 -134 720 272 22 0 chr1 1356658 1356886 -280836778 - L1 LINE L1 -3654 2492 2260 316 235 265 0 chr1 1356938 1357040 -280836624 + L1ME LINE L1 5312 5440 -681 2226 71 4 0 chr1 1357219 1357526 -280836138 + AluY SINE Alu 1 308 0 241 185 0 98 chr1 1357537 1357629 -280836035 + L1ME LINE L1 5625 5707 -414 1507 179 52 10 chr1 1358675 1358966 -280834698 + AluJo SINE Alu 1 303 -9 321 125 0 0 chr1 1359483 1359539 -280834125 + (CA)n Simple_repeat Simple_repeat 1 56 0 293 258 24 24 chr1 1359664 1359788 -280833876 + L1MC5 LINE L1 7660 7783 -178 2263 61 10 3 chr1 1359792 1360085 -280833579 + AluY SINE Alu 1 295 -16 190 233 47 0 chr1 1364032 1364075 -280829589 + L2 LINE L2 352 396 -2918 2197 79 3 7 chr1 1364777 1365068 -280828596 + AluSc SINE Alu 1 290 -19 2162 121 0 6 chr1 1366138 1366452 -280827212 + AluSx SINE Alu 1 312 0 330 187 131 0 chr1 1368679 1368774 -280824890 - MIR SINE MIR -83 125 41 198 143 0 0 chr1 1370490 1370525 -280823139 + (CA)n Simple_repeat Simple_repeat 1 35 0 22 35 0 0 chr1 1372527 1372556 -280821108 + GC_rich Low_complexity Low_complexity 1 29 0 36 40 0 0 chr1 1372731 1372781 -280820883 + GC_rich Low_complexity Low_complexity 1 50 0 206 179 0 15 chr1 1372941 1373008 -280820656 + (CTCGG)n Simple_repeat Simple_repeat 5 70 0 30 77 0 0 chr1 1373008 1373073 -280820591 + GC_rich Low_complexity Low_complexity 1 65 0 37 23 0 0 chr1 1373429 1373473 -280820191 + GC_rich Low_complexity Low_complexity 1 44 0 1543 145 16 92 chr1 1374339 1374656 -280819008 + AluJb SINE Alu 3 295 -17 2355 58 7 0 chr1 1374657 1374948 -280818716 + AluY SINE Alu 1 293 -18 2301 108 0 0 chr1 1374959 1375266 -280818398 + AluSx SINE Alu 3 309 -3 209 302 47 19 chr1 1376259 1376365 -280817299 - L2 LINE L2 -255 3058 2950 183 156 0 0 chr1 1376445 1376477 -280817187 + (CCCTG)n Simple_repeat Simple_repeat 5 36 0 2310 91 3 3 chr1 1376628 1376936 -280816728 - AluSq SINE Alu -5 308 1 471 241 87 100 chr1 1376959 1377004 -280816660 - LTR16C LTR ERVL 0 491 447 2176 95 0 3 chr1 1377004 1377325 -280816339 - AluSx SINE Alu 0 320 1 933 110 16 0 chr1 1377335 1377462 -280816202 - FLAM_C SINE Alu -4 129 1 471 241 87 100 chr1 1377462 1377645 -280816019 - LTR16C LTR ERVL -53 438 254 408 252 122 98 chr1 1377698 1377984 -280815680 + L1MC4a LINE L1 6442 6734 -1074 1387 100 5 0 chr1 1377986 1378176 -280815488 - AluY SINE Alu -13 298 108 1631 176 40 10 chr1 1378995 1379296 -280814368 - AluSq SINE Alu -3 310 1 1243 156 5 0 chr1 1379582 1379781 -280813883 - AluSx SINE Alu -81 231 32 739 274 55 20 chr1 1379788 1380318 -280813346 - L1ME2 LINE L1 -47 6117 5549 378 250 15 76 chr1 1380669 1380801 -280812863 + L1MC4 LINE L1 6966 7089 -953 1800 167 10 6 chr1 1380842 1381153 -280812511 + AluJo SINE Alu 1 312 0 906 191 0 0 chr1 1381153 1381315 -280812349 + AluJo/FRAM SINE Alu 132 293 -19 182 91 30 0 chr1 1381317 1381350 -280812314 + GA-rich Low_complexity Low_complexity 1 34 0 963 312 148 10 chr1 1381355 1381958 -280811706 + L1MC4 LINE L1 7284 7990 -5 2355 85 0 0 chr1 1382184 1382489 -280811175 - AluY SINE Alu -6 305 1 2217 101 0 10 chr1 1382490 1382796 -280810868 - AluSx SINE Alu -9 303 1 2143 72 0 38 chr1 1382807 1383124 -280810540 - AluY SINE Alu 0 306 1 450 302 105 43 chr1 1383329 1383816 -280809848 + HAL1 LINE L1 1749 2265 -242 307 289 41 29 chr1 1384110 1384139 -280809525 + L1M4 LINE L1 2797 2824 -3322 2059 120 36 0 chr1 1384139 1384440 -280809224 + AluSx SINE Alu 1 312 0 307 289 41 29 chr1 1384440 1384652 -280809012 + L1M4 LINE L1 2824 3041 -3105 2266 106 0 0 chr1 1384724 1385035 -280808629 - AluY SINE Alu 0 311 1 2192 114 0 0 chr1 1385035 1385333 -280808331 - AluSx SINE Alu -13 299 1 2309 98 0 0 chr1 1385346 1385653 -280808011 - AluY SINE Alu -4 307 1 207 69 0 0 chr1 1386531 1386560 -280807104 + (CACGC)n Simple_repeat Simple_repeat 4 32 0 2438 47 0 17 chr1 1390486 1390787 -280802877 + AluY SINE Alu 6 301 -10 1091 68 0 0 chr1 1390803 1390936 -280802728 + AluSq/x SINE Alu 1 133 -180 2502 48 0 16 chr1 1390939 1391249 -280802415 + AluY SINE Alu 1 305 -6 2422 72 0 25 chr1 1391265 1391401 -280802263 + AluSq SINE Alu 1 139 -174 2380 68 0 10 chr1 1391401 1391709 -280801955 + AluY SINE Alu 1 305 -6 279 0 0 0 chr1 1391709 1391740 -280801924 + (TA)n Simple_repeat Simple_repeat 2 32 0 2422 72 0 25 chr1 1391740 1391923 -280801741 + AluSq SINE Alu 137 313 0 292 250 0 26 chr1 1395101 1395177 -280798487 + (CACG)n Simple_repeat Simple_repeat 3 76 0 213 39 0 0 chr1 1395178 1395204 -280798460 + (CA)n Simple_repeat Simple_repeat 2 27 0 277 395 26 21 chr1 1395596 1395786 -280797878 + MIR3 SINE MIR 4 194 -14 2477 47 7 0 chr1 1396258 1396555 -280797109 - AluY SINE Alu -12 299 1 182 152 0 22 chr1 1397748 1397794 -280795870 + (CGGGG)n Simple_repeat Simple_repeat 5 49 0 356 253 11 59 chr1 1397867 1398053 -280795611 + G-rich Low_complexity Low_complexity 3 179 0 * 422 124 15 144 chr1 1397924 1398126 -280795538 + (CGGGG)n Simple_repeat Simple_repeat 4 179 0 259 345 0 0 chr1 1398069 1398246 -280795418 + G-rich Low_complexity Low_complexity 1 177 0 * 21 36 0 0 chr1 1398496 1398524 -280795140 + GC_rich Low_complexity Low_complexity 1 28 0 243 350 98 12 chr1 1399200 1399363 -280794301 + MIR SINE MIR 47 223 -39 695 120 28 28 chr1 1400221 1400329 -280793335 + AluJo SINE Alu 34 141 -171 1629 173 43 17 chr1 1400329 1400451 -280793213 + AluJb SINE Alu 1 118 -194 189 0 0 0 chr1 1400451 1400472 -280793192 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 1629 173 43 17 chr1 1400472 1400650 -280793014 + AluJb SINE Alu 118 309 -3 697 167 0 0 chr1 1400656 1400764 -280792900 + AluSg/x SINE Alu 191 298 -14 2400 84 0 0 chr1 1401058 1401367 -280792297 - AluY SINE Alu 0 311 3 2120 124 0 7 chr1 1401369 1401667 -280791997 - AluSx SINE Alu -16 296 1 761 276 128 43 chr1 1402441 1402681 -280790983 - MLT1C LTR MaLR -7 460 242 2154 132 3 0 chr1 1402681 1402991 -280790673 - AluSq SINE Alu -2 311 1 2288 104 0 3 chr1 1402999 1403307 -280790357 - AluSx SINE Alu -3 309 3 761 276 128 43 chr1 1403307 1403478 -280790186 - MLT1C LTR MaLR -231 236 4 270 0 0 0 chr1 1403683 1403713 -280789951 + (GGCTG)n Simple_repeat Simple_repeat 4 33 0 1897 171 0 0 chr1 1406237 1406547 -280787117 - AluSx SINE Alu -2 310 1 1481 177 79 4 chr1 1406549 1406826 -280786838 - AluJo SINE Alu -14 298 1 194 71 0 71 chr1 1408282 1408324 -280785340 + (CGGGGG)n Simple_repeat Simple_repeat 3 41 0 33 66 0 0 chr1 1408390 1408451 -280785213 + GC_rich Low_complexity Low_complexity 1 61 0 333 212 28 34 chr1 1408719 1408898 -280784766 + GA-rich Low_complexity Low_complexity 1 178 0 328 250 12 30 chr1 1408926 1409090 -280784574 + GA-rich Low_complexity Low_complexity 3 163 0 198 220 34 25 chr1 1409121 1409239 -280784425 + GA-rich Low_complexity Low_complexity 5 123 0 312 367 20 27 chr1 1409265 1409415 -280784249 + HAL1b LINE L1 1 149 -1199 1632 136 57 4 chr1 1411000 1411264 -280782400 + AluJo SINE Alu 1 278 -34 2353 52 24 0 chr1 1412144 1412434 -280781230 - AluSx SINE Alu -15 297 1 309 204 118 11 chr1 1413817 1413910 -280779754 - MER5A DNA MER1_type -5 184 82 2139 114 3 10 chr1 1414516 1414824 -280778840 - AluJo SINE Alu -6 306 1 2635 26 0 7 chr1 1414837 1415146 -280778518 - AluY SINE Alu 0 311 5 371 184 18 53 chr1 1415292 1415406 -280778258 + MLT1A2 LTR MaLR 111 220 -154 515 271 140 4 chr1 1415821 1416050 -280777614 + L1MC1 LINE L1 5840 6099 -234 185 65 32 0 chr1 1416153 1416184 -280777480 + (CAGGG)n Simple_repeat Simple_repeat 4 35 0 274 183 57 3 chr1 1416186 1416260 -280777404 + L1MC1 LINE L1 6261 6333 0 2433 71 3 0 chr1 1416270 1416581 -280777083 + AluSx SINE Alu 1 312 0 463 273 100 49 chr1 1419968 1420331 -280773333 + MLT1A1 LTR MaLR 4 358 -7 232 173 0 31 chr1 1420333 1420461 -280773203 + (CTCA)n Simple_repeat Simple_repeat 1 124 0 1150 103 13 0 chr1 1420471 1420627 -280773037 - AluSg/x SINE Alu -21 289 132 2177 94 0 16 chr1 1420627 1420936 -280772728 - AluSx SINE Alu -8 304 1 332 161 0 23 chr1 1420946 1421033 -280772631 + (CTCA)n Simple_repeat Simple_repeat 2 86 0 225 297 30 10 chr1 1422607 1422708 -280770956 - L2 LINE L2 -358 2956 2854 280 291 0 51 chr1 1423269 1423427 -280770237 + (TCCG)n Simple_repeat Simple_repeat 1 150 0 249 280 43 0 chr1 1425267 1425360 -280768304 + L1M4 LINE L1 5613 5709 -475 461 300 132 26 chr1 1425363 1425786 -280767878 + L1MB7 LINE L1 5671 6138 -46 270 326 0 0 chr1 1427380 1427478 -280766186 - MER47B DNA MER2_type 0 418 321 455 288 119 3 chr1 1427489 1427808 -280765856 - MER47B DNA MER2_type -51 367 12 477 162 42 6 chr1 1428344 1428511 -280765153 + (TTGGGG)n Simple_repeat Simple_repeat 2 174 0 302 326 0 41 chr1 1430857 1431029 -280762635 + (CACG)n Simple_repeat Simple_repeat 4 168 0 244 240 40 13 chr1 1431984 1432059 -280761605 + L1MB3 LINE L1 5413 5489 -682 327 266 23 0 chr1 1432117 1432213 -280761451 + L1MB3 LINE L1 5512 5613 -561 2156 101 7 7 chr1 1432213 1432509 -280761155 + AluSx SINE Alu 2 297 -15 327 266 23 0 chr1 1432509 1432521 -280761143 + L1MB3 LINE L1 5613 5623 -551 684 91 0 0 chr1 1432521 1432609 -280761055 - AluY SINE Alu -13 298 211 1732 250 41 30 chr1 1432731 1433298 -280760366 + L1MB3 LINE L1 5609 6181 -2 207 270 11 60 chr1 1433949 1434134 -280759530 + C-rich Low_complexity Low_complexity 2 177 0 * 311 253 18 42 chr1 1434005 1434171 -280759493 + (CCCA)n Simple_repeat Simple_repeat 1 162 0 732 207 39 6 chr1 1435477 1435656 -280758008 + MER58A DNA MER1_type 40 224 0 2151 110 0 13 chr1 1435869 1436179 -280757485 + AluSx SINE Alu 3 308 -4 1866 148 0 0 chr1 1437349 1437632 -280756032 - AluJb SINE Alu -23 289 7 635 242 62 0 chr1 1438058 1438236 -280755428 + MER58A DNA MER1_type 36 224 0 398 299 119 21 chr1 1438241 1438435 -280755229 - MIR SINE MIR -22 240 28 1261 208 144 5 chr1 1439129 1439518 -280754146 - MER54A LTR ERVL 0 901 459 321 289 21 48 chr1 1439635 1439822 -280753842 + L1M4 LINE L1 3729 3910 -2236 2345 76 0 29 chr1 1439851 1440166 -280753498 - AluY SINE Alu -5 306 1 627 297 36 89 chr1 1440960 1441027 -280752637 + L1M4 LINE L1 4369 4438 -1708 831 152 0 8 chr1 1441027 1441159 -280752505 + FLAM_C SINE Alu 1 131 -2 627 297 36 89 chr1 1441159 1441343 -280752321 + L1M4 LINE L1 4438 4600 -1546 2090 130 0 0 chr1 1441343 1441643 -280752021 + AluSx SINE Alu 1 300 -12 627 297 36 89 chr1 1441643 1441727 -280751937 + L1M4 LINE L1 4600 4687 -1459 411 21 0 0 chr1 1443502 1443550 -280750114 + (CA)n Simple_repeat Simple_repeat 2 49 0 1559 80 0 0 chr1 1444662 1444861 -280748803 + AluY SINE Alu 105 303 -8 1009 207 176 100 chr1 1445805 1445941 -280747723 + MER68 LTR ERV1 4 128 -434 678 136 88 32 chr1 1445941 1446066 -280747598 + FLAM_C SINE Alu 2 133 0 1009 207 176 100 chr1 1446066 1446077 -280747587 + MER68 LTR ERV1 128 137 -425 1811 149 40 7 chr1 1446077 1446378 -280747286 + AluSx SINE Alu 1 311 -1 1009 207 176 100 chr1 1446378 1446443 -280747221 + MER68 LTR ERV1 137 196 -366 1736 244 129 11 chr1 1446443 1446907 -280746757 + MLT2B1 LTR ERVL 2 520 0 1009 207 176 100 chr1 1446907 1447204 -280746460 + MER68 LTR ERV1 196 554 -8 253 289 11 44 chr1 1447402 1447492 -280746172 + L2 LINE L2 3185 3271 -1 241 225 12 12 chr1 1447934 1448014 -280745650 + (CACCAT)n Simple_repeat Simple_repeat 4 83 0 535 234 0 22 chr1 1448066 1448250 -280745414 + (CACCAT)n Simple_repeat Simple_repeat 1 180 0 705 204 2 19 chr1 1448269 1448681 -280744983 + (CACCAT)n Simple_repeat Simple_repeat 1 405 0 351 309 66 7 chr1 1448770 1448906 -280744758 - MIR SINE MIR -86 176 33 846 184 44 0 chr1 1449110 1449268 -280744396 - AluJb SINE Alu -55 257 93 268 299 23 0 chr1 1450263 1450350 -280743314 + MER91A DNA MER1_type 16 104 -92 1732 261 101 47 chr1 1450519 1451236 -280742428 + L1MB5 LINE L1 5353 6117 -57 2151 112 3 0 chr1 1451236 1451532 -280742132 - AluSx SINE Alu -15 297 1 1732 261 101 47 chr1 1451532 1451594 -280742070 + L1MB5 LINE L1 6117 6174 0 1526 170 3 80 chr1 1451632 1451956 -280741708 + AluJb SINE Alu 1 299 -13 783 200 48 24 chr1 1451962 1452127 -280741537 + FRAM SINE Alu 1 168 -8 735 278 15 0 chr1 1452475 1452673 -280740991 + Tigger3(Golem) DNA MER2_type 2827 3027 -2 2466 46 0 13 chr1 1453600 1453906 -280739758 - AluY SINE Alu -9 302 1 1717 142 21 21 chr1 1453915 1454204 -280739460 - AluJo SINE Alu -23 289 1 201 350 73 36 chr1 1455012 1455149 -280738515 + MER5A DNA MER1_type 13 154 -35 313 240 40 0 chr1 1455191 1455291 -280738373 + (TGGA)n Simple_repeat Simple_repeat 1 104 0 534 308 20 20 chr1 1455306 1455652 -280738012 + (TGGA)n Simple_repeat Simple_repeat 1 346 0 260 268 26 0 chr1 1455666 1455819 -280737845 + (TAGA)n Simple_repeat Simple_repeat 4 160 0 276 330 25 0 chr1 1455833 1455951 -280737713 + (TAGA)n Simple_repeat Simple_repeat 4 124 0 219 263 25 0 chr1 1455965 1456083 -280737581 + (TGGA)n Simple_repeat Simple_repeat 4 124 0 385 321 28 11 chr1 1456098 1456443 -280737221 + (TAGA)n Simple_repeat Simple_repeat 1 350 0 447 305 29 0 chr1 1456457 1456631 -280737033 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 410 316 23 17 chr1 1456652 1456829 -280736835 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 386 188 41 0 chr1 1456871 1457041 -280736623 + (TGGA)n Simple_repeat Simple_repeat 2 178 0 1937 132 0 17 chr1 1458363 1458659 -280735005 - AluJb SINE Alu -21 291 1 2508 58 0 3 chr1 1460962 1461274 -280732390 + AluY SINE Alu 1 311 0 197 273 0 0 chr1 1461523 1461567 -280732097 + L2 LINE L2 3208 3251 -21 2407 90 0 0 chr1 1462602 1462912 -280730752 + AluSx SINE Alu 1 310 -2 1990 114 4 0 chr1 1463286 1463559 -280730105 - AluSx SINE Alu -38 274 1 2120 105 0 13 chr1 1463571 1463875 -280729789 - AluSx SINE Alu -12 300 1 260 277 142 14 chr1 1463977 1464118 -280729546 - L1MEd LINE L1 -5382 737 579 2231 94 0 7 chr1 1464629 1464938 -280728726 - AluSg1 SINE Alu -2 307 1 1990 108 49 0 chr1 1465304 1465592 -280728072 - AluSx SINE Alu -10 302 1 484 262 159 0 chr1 1466640 1466768 -280726896 + MLT1C LTR MaLR 192 298 -169 1833 242 28 74 chr1 1466768 1467347 -280726317 + MLT2B3 LTR ERVL 1 552 -2 484 262 159 0 chr1 1467347 1467451 -280726213 + MLT1C LTR MaLR 298 461 -6 215 339 0 43 chr1 1470584 1470770 -280722894 + G-rich Low_complexity Low_complexity 1 178 0 292 192 110 0 chr1 1471249 1471322 -280722342 + MLT1B LTR MaLR 5 85 -289 * 314 204 13 26 chr1 1471315 1471402 -280722262 + MLT1B LTR MaLR 265 375 -15 2378 49 7 0 chr1 1472140 1472428 -280721236 + AluY SINE Alu 6 295 -16 788 138 0 43 chr1 1472785 1472923 -280720741 - AluSq/x SINE Alu -181 132 1 1106 282 65 8 chr1 1473385 1473754 -280719910 + MLT2C1 LTR ERVL 1 390 -7 1905 162 0 9 chr1 1474040 1474355 -280719309 + AluJb SINE Alu 1 312 0 466 259 72 96 chr1 1474581 1474944 -280718720 - L1MC3 LINE L1 -67 7718 7365 365 263 66 6 chr1 1479565 1479733 -280713931 - MLT1A2 LTR MaLR 0 374 205 445 326 0 0 chr1 1479838 1480013 -280713651 + (CCCTAA)n Simple_repeat Simple_repeat 6 180 0 491 312 0 0 chr1 1480039 1480458 -280713206 + (CCCTAA)n Simple_repeat Simple_repeat 1 419 0 413 326 11 0 chr1 1480481 1480659 -280713005 + (CCCTAA)n Simple_repeat Simple_repeat 1 180 0 350 296 23 17 chr1 1480751 1480927 -280712737 + (CACCAT)n Simple_repeat Simple_repeat 2 178 0 * 467 326 0 0 chr1 1480918 1481093 -280712571 + (CCCTAA)n Simple_repeat Simple_repeat 6 180 0 325 317 6 22 chr1 1481105 1481288 -280712376 + (CCCTAA)n Simple_repeat Simple_repeat 1 180 0 545 181 19 9 chr1 1481323 1481428 -280712236 - MLT1A2 LTR MaLR -268 106 1 479 282 138 0 chr1 1481428 1481616 -280712048 + MLT-int LTR MaLR 1496 1709 -26 610 331 117 48 chr1 1481619 1481655 -280712009 + L1MC/D LINE L1 1263 1295 -5426 1796 134 15 0 chr1 1481655 1481924 -280711740 + AluSq SINE Alu 2 274 -39 610 331 117 48 chr1 1481924 1482171 -280711493 + L1MC/D LINE L1 1295 1523 -5198 2120 90 40 10 chr1 1482171 1482472 -280711192 + AluSq SINE Alu 1 310 -3 610 331 117 48 chr1 1482472 1482805 -280710859 + L1MC/D LINE L1 1523 1986 -4735 1219 134 0 0 chr1 1482805 1482992 -280710672 + AluSq SINE Alu 127 313 0 428 274 79 51 chr1 1483212 1483253 -280710411 + L1MC/D LINE L1 2255 2293 -4247 2255 122 0 0 chr1 1483253 1483565 -280710099 + AluSq SINE Alu 1 312 -1 428 274 79 51 chr1 1483565 1484011 -280709653 + L1MC/D LINE L1 2293 2725 -3815 396 0 0 0 chr1 1484011 1484055 -280709609 + (CA)n Simple_repeat Simple_repeat 1 44 0 428 274 79 51 chr1 1484055 1484132 -280709532 + L1MC/D LINE L1 2725 2792 -3748 2372 76 0 0 chr1 1484132 1484433 -280709231 + AluY SINE Alu 1 301 -10 428 274 79 51 chr1 1484433 1484473 -280709191 + L1MC/D LINE L1 2792 2829 -3711 * 801 283 93 67 chr1 1484444 1484473 -280709191 + L1MC/D LINE L1 4064 4091 -2449 2298 77 16 16 chr1 1484473 1484784 -280708880 + AluSx SINE Alu 1 311 -1 801 283 93 67 chr1 1484784 1485529 -280708135 + L1MC/D LINE L1 4091 4879 -1661 1906 129 11 4 chr1 1485529 1485808 -280707856 + AluJo SINE Alu 1 281 -31 801 283 93 67 chr1 1485808 1486176 -280707488 + L1MC/D LINE L1 4879 5236 -1304 260 319 56 0 chr1 1486217 1486361 -280707303 + L1MC/D LINE L1 5558 5709 -831 233 136 0 23 chr1 1486375 1486419 -280707245 + L1M LINE L1 5700 5742 -996 2246 251 67 14 chr1 1486602 1487292 -280706372 + MER21B LTR ERV1 14 739 -124 2386 88 0 0 chr1 1487978 1488285 -280705379 - AluSc SINE Alu -2 307 1 2164 102 0 7 chr1 1489787 1490084 -280703580 + AluSq SINE Alu 1 296 -12 204 67 0 0 chr1 1490084 1490114 -280703550 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 236 325 17 51 chr1 1493186 1493303 -280700361 - MIR SINE MIR -47 215 103 655 247 36 10 chr1 1493495 1493927 -280699737 + MLT1D LTR MaLR 35 505 0 189 146 0 24 chr1 1494354 1494395 -280699269 - L2 LINE L2 -206 3066 3027 327 365 14 28 chr1 1495104 1495249 -280698415 + L1MC/D LINE L1 6006 6148 -2054 2229 91 10 0 chr1 1496972 1497269 -280696395 + AluSq SINE Alu 1 300 -13 682 269 143 11 chr1 1498366 1498730 -280694934 + LTR52 LTR ERVL 2 413 -8 698 139 123 0 chr1 1498949 1499071 -280694593 - FRAM SINE Alu -39 137 1 1384 145 110 4 chr1 1499519 1499774 -280693890 + AluJo SINE Alu 1 282 -30 2347 94 0 0 chr1 1500040 1500349 -280693315 + AluY SINE Alu 1 309 -2 345 374 67 5 chr1 1500918 1501113 -280692551 - MIR SINE MIR -16 246 40 207 69 0 0 chr1 1501132 1501161 -280692503 + (TGAA)n Simple_repeat Simple_repeat 4 32 0 22 35 0 0 chr1 1501634 1501663 -280692001 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr1 1503328 1503348 -280690316 + (TGAA)n Simple_repeat Simple_repeat 4 23 0 2224 85 0 0 chr1 1503689 1503972 -280689692 + AluY SINE Alu 1 332 0 355 61 0 0 chr1 1503972 1504021 -280689643 + (CAAAA)n Simple_repeat Simple_repeat 2 145 0 2581 150 23 48 chr1 1504367 1504928 -280688736 + LTR10A LTR ERV1 1 547 -62 933 172 0 0 chr1 1506736 1506916 -280686748 + G-rich Low_complexity Low_complexity 1 180 0 405 141 0 0 chr1 1506916 1506987 -280686677 + (GGGGA)n Simple_repeat Simple_repeat 1 71 0 22 0 0 0 chr1 1509962 1509984 -280683680 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr1 1510729 1510758 -280682906 + AT_rich Low_complexity Low_complexity 1 29 0 650 266 77 0 chr1 1510962 1511210 -280682454 + L1M3 LINE L1 5283 5549 -634 739 130 84 0 chr1 1511212 1511343 -280682321 + L1MB2 LINE L1 6029 6170 -1 2184 102 0 16 chr1 1511349 1511654 -280682010 + AluSq SINE Alu 1 300 -13 546 271 62 71 chr1 1512442 1512767 -280680897 + MLT1C LTR MaLR 5 326 -64 595 189 27 0 chr1 1512769 1512880 -280680784 - FLAM_A SINE Alu -5 137 24 260 261 29 0 chr1 1512886 1512955 -280680709 + MLT1C LTR MaLR 310 380 -10 858 266 88 10 chr1 1512955 1513252 -280680412 + MLT1A1 LTR MaLR 3 322 -43 195 42 0 0 chr1 1513732 1513756 -280679908 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 231 209 0 0 chr1 1513823 1513866 -280679798 + L1ME4a LINE L1 6074 6116 -5 242 358 12 0 chr1 1514206 1514287 -280679377 - L2 LINE L2 -7 3306 3225 476 354 54 57 chr1 1515268 1515305 -280678359 + L1MC4a LINE L1 6151 6187 -1621 2186 123 0 0 chr1 1515305 1515607 -280678057 + AluSx SINE Alu 1 302 -10 476 354 54 57 chr1 1515607 1515883 -280677781 + L1MC4a LINE L1 6187 6463 -1345 283 348 55 8 chr1 1516042 1516278 -280677386 + L1MC4 LINE L1 6780 7026 -1016 300 160 0 0 chr1 1516282 1516332 -280677332 + Alu SINE Alu 1 50 -252 1976 124 3 10 chr1 1516332 1516630 -280677034 + AluSx SINE Alu 6 301 -11 1989 124 7 13 chr1 1517769 1518075 -280675589 - AluJo SINE Alu -8 304 1 303 292 39 0 chr1 1518346 1518476 -280675188 + Charlie1 DNA MER1_type 19 153 -2608 1166 248 58 100 chr1 1518482 1518539 -280675125 + Charlie1 DNA MER1_type 2083 2141 -620 2159 100 0 26 chr1 1518539 1518848 -280674816 - AluSx SINE Alu -11 301 1 1166 248 58 100 chr1 1518848 1519479 -280674185 + Charlie1 DNA MER1_type 2141 2742 -19 264 281 9 18 chr1 1519866 1519980 -280673684 + C-rich Low_complexity Low_complexity 1 113 0 492 251 86 29 chr1 1520111 1520286 -280673378 - MER63A DNA MER1_type -25 185 1 1260 286 133 10 chr1 1521475 1522100 -280671564 + L1MC3 LINE L1 6898 7599 -186 210 357 84 32 chr1 1523219 1523373 -280670291 - MIR SINE MIR -76 186 25 * 438 303 118 22 chr1 1523370 1523548 -280670116 + MIR SINE MIR 14 208 -54 1294 266 189 36 chr1 1523618 1523692 -280669972 + HAL1 LINE L1 973 1034 -1473 2483 50 0 0 chr1 1523692 1523989 -280669675 + AluY SINE Alu 1 297 -14 1294 266 189 36 chr1 1523989 1525205 -280668459 + HAL1 LINE L1 1034 2461 -46 22 0 0 0 chr1 1525237 1525259 -280668405 + AT_rich Low_complexity Low_complexity 1 22 0 2250 99 3 0 chr1 1526070 1526373 -280667291 - AluSx SINE Alu -8 304 1 21 0 0 0 chr1 1528860 1528881 -280664783 + GC_rich Low_complexity Low_complexity 1 21 0 764 235 76 11 chr1 1530061 1530532 -280663132 + MER74A LTR ERVL 25 554 -4 198 186 47 0 chr1 1530574 1530617 -280663047 + MIR SINE MIR 28 72 -190 473 252 97 0 chr1 1530805 1530960 -280662704 + MER58 DNA MER1_type 64 233 -108 228 262 27 57 chr1 1531569 1531734 -280661930 - MIR SINE MIR -15 247 43 224 253 93 93 chr1 1533332 1533494 -280660170 - MIR3 SINE MIR -46 162 1 339 269 74 27 chr1 1534177 1534326 -280659338 + MLT1D LTR MaLR 1 156 -349 1031 279 45 5 chr1 1535503 1535929 -280657735 + L1MB3 LINE L1 2568 3010 -3136 715 185 31 8 chr1 1535937 1536067 -280657597 - AluJb SINE Alu -179 133 1 362 238 58 10 chr1 1536067 1536199 -280657465 + L1MB3 LINE L1 3007 3147 -2999 1673 140 4 0 chr1 1536199 1536449 -280657215 + AluSx SINE Alu 1 251 -61 362 238 58 10 chr1 1536449 1536488 -280657176 + L1MB3 LINE L1 3147 3183 -2963 * 6819 212 30 38 chr1 1536479 1537138 -280656526 + L1MB3 LINE L1 3489 4152 -2031 2439 59 0 3 chr1 1537138 1537444 -280656220 - AluY SINE Alu -6 305 1 6819 212 30 38 chr1 1537444 1538694 -280654970 + L1MB3 LINE L1 4152 5410 -773 2112 128 0 3 chr1 1538694 1538999 -280654665 + AluSx SINE Alu 1 304 -8 6819 212 30 38 chr1 1538999 1539228 -280654436 + L1MB3 LINE L1 5410 5639 -544 2137 131 0 0 chr1 1539228 1539534 -280654130 + AluJb SINE Alu 1 306 -6 6819 212 30 38 chr1 1539534 1540053 -280653611 + L1MB3 LINE L1 5639 6133 -50 1653 164 13 30 chr1 1540053 1540358 -280653306 + AluSx SINE Alu 1 300 -12 6819 212 30 38 chr1 1540358 1540409 -280653255 + L1MB3 LINE L1 6133 6183 0 543 271 90 24 chr1 1540404 1540659 -280653005 + L1MB5 LINE L1 5814 6085 -89 * 211 309 43 0 chr1 1542350 1542444 -280651220 + L2 LINE L2 2220 2317 -997 812 158 0 0 chr1 1543747 1543867 -280649797 + AluSq/x SINE Alu 1 120 -193 2138 121 3 3 chr1 1543922 1544229 -280649435 - AluSx SINE Alu -5 307 1 1578 161 16 71 chr1 1544354 1544538 -280649126 - AluJo SINE Alu -9 293 131 2032 120 3 13 chr1 1544538 1544674 -280648990 + AluSx SINE Alu 1 137 -175 2250 81 0 7 chr1 1544674 1544969 -280648695 + AluSc SINE Alu 1 293 -16 2032 120 3 13 chr1 1544969 1545132 -280648532 + AluSx SINE Alu 137 297 -15 1578 161 16 71 chr1 1545132 1545257 -280648407 - AluJo SINE Alu -171 131 1 2541 54 0 10 chr1 1545813 1546126 -280647538 + AluY SINE Alu 1 310 -1 2421 57 0 0 chr1 1547602 1547901 -280645763 + AluY SINE Alu 2 300 -11 1830 121 43 0 chr1 1549444 1549726 -280643938 + AluSg SINE Alu 1 294 -16 398 264 0 3 chr1 1550484 1550792 -280642872 + (TG)n Simple_repeat Simple_repeat 1 306 0 210 350 68 0 chr1 1551097 1551214 -280642450 - MIR SINE MIR -78 184 60 331 329 5 91 chr1 1551908 1551971 -280641693 + L1ME LINE L1 5497 5564 -557 2555 49 3 0 chr1 1551971 1552279 -280641385 - AluY SINE Alu -2 309 1 331 329 5 91 chr1 1552279 1552425 -280641239 + L1ME LINE L1 5564 5688 -433 562 168 0 58 chr1 1552563 1552754 -280640910 + (CA)n Simple_repeat Simple_repeat 1 180 0 184 80 0 0 chr1 1554108 1554133 -280639531 + (TTTTG)n Simple_repeat Simple_repeat 1 90 0 2166 86 7 0 chr1 1554133 1554411 -280639253 - AluY SINE Alu -31 280 1 1562 128 0 0 chr1 1554411 1554628 -280639036 - AluSx SINE Alu -95 217 1 1631 114 4 0 chr1 1555072 1555299 -280638365 - AluSq SINE Alu -85 228 1 436 341 130 9 chr1 1555466 1555689 -280637975 - MIR SINE MIR 0 262 13 596 266 95 37 chr1 1555901 1556280 -280637384 + LTR16C LTR ERVL 90 490 -1 1314 238 109 3 chr1 1556779 1557189 -280636475 - MLT1C LTR MaLR 0 467 12 1171 223 40 9 chr1 1557481 1557804 -280635860 + MLT1A1 LTR MaLR 1 333 -32 1556 167 30 0 chr1 1557863 1558132 -280635532 - AluJo SINE Alu -6 306 30 434 309 85 13 chr1 1559001 1559237 -280634427 + ERVL LTR ERVL 2042 2294 -3470 2112 96 4 0 chr1 1559782 1560086 -280633578 + AluSc SINE Alu 1 305 0 2345 97 0 3 chr1 1560097 1560407 -280633257 + AluSc SINE Alu 1 309 0 834 134 0 8 chr1 1560559 1560686 -280632978 + FLAM_C SINE Alu 1 126 -17 958 256 99 6 chr1 1560903 1561267 -280632397 + MLT1C LTR MaLR 53 450 -17 531 0 0 0 chr1 1562164 1562223 -280631441 + (TTATG)n Simple_repeat Simple_repeat 2 60 0 1952 108 29 4 chr1 1562223 1562501 -280631163 - AluSg SINE Alu -25 285 1 1797 167 7 0 chr1 1563170 1563470 -280630194 - AluJb SINE Alu -10 302 1 2324 90 0 0 chr1 1563741 1564040 -280629624 - AluSq SINE Alu -14 299 1 419 287 74 0 chr1 1564390 1564512 -280629152 + MIR3 SINE MIR 33 163 -45 1211 176 124 11 chr1 1566216 1566483 -280627181 + AluSg1 SINE Alu 1 297 -12 1858 141 40 0 chr1 1566483 1566781 -280626883 + AluSx SINE Alu 1 310 -2 257 260 207 13 chr1 1566986 1567136 -280626528 + MLT1A1 LTR MaLR 390 568 -25 1404 254 42 34 chr1 1567161 1567479 -280626185 - L1ME1 LINE L1 -269 5966 5641 2466 77 0 3 chr1 1567479 1567792 -280625872 - AluSx SINE Alu 0 312 1 1404 254 42 34 chr1 1567792 1567950 -280625714 - L1ME1 LINE L1 -594 5641 5486 2243 110 3 0 chr1 1567951 1568260 -280625404 - AluSx SINE Alu -2 310 1 213 108 0 0 chr1 1568270 1568307 -280625357 + (TTTTA)n Simple_repeat Simple_repeat 4 40 0 712 147 0 9 chr1 1568310 1568419 -280625245 - FLAM_C SINE Alu -25 118 11 655 223 75 63 chr1 1568437 1568709 -280624955 - L1ME1 LINE L1 -752 5463 5216 643 264 22 4 chr1 1568754 1568985 -280624679 - L1ME1 LINE L1 -6123 273 39 2161 100 0 16 chr1 1569018 1569329 -280624335 + AluSx SINE Alu 1 306 -6 444 345 65 5 chr1 1569434 1569634 -280624030 - L1MCa LINE L1 -4813 1613 1402 748 347 79 29 chr1 1569652 1570131 -280623533 - HERV16 LTR ERVL -4192 804 302 2292 77 0 10 chr1 1570135 1570458 -280623206 - AluY SINE Alu 0 323 4 2404 69 0 3 chr1 1570461 1570764 -280622900 - AluY SINE Alu -4 307 6 544 236 55 83 chr1 1570773 1571193 -280622471 + Charlie2 DNA MER1_type 2368 2775 -87 902 140 7 7 chr1 1571200 1571343 -280622321 + FRAM SINE Alu 4 146 -30 440 208 125 0 chr1 1572654 1572774 -280620890 - HERV16 LTR ERVL -4859 137 3 425 308 41 56 chr1 1572826 1573164 -280620500 - LTR16B LTR ERVL -50 414 82 1267 146 13 50 chr1 1573319 1573479 -280620185 - AluJb SINE Alu -14 298 134 2201 93 7 0 chr1 1573479 1573770 -280619894 - AluSc SINE Alu -15 294 2 2080 132 0 0 chr1 1573771 1574067 -280619597 - AluSg SINE Alu -14 296 1 1267 146 13 50 chr1 1574067 1574143 -280619521 - AluJb SINE Alu -177 135 69 582 335 14 7 chr1 1574145 1574420 -280619244 - L1MC4 LINE L1 -998 7044 6768 443 229 0 0 chr1 1574479 1574575 -280619089 + MER3 DNA MER1_type 38 133 -76 2120 114 7 3 chr1 1574578 1574885 -280618779 - AluSq SINE Alu -5 308 1 599 109 11 0 chr1 1574953 1575045 -280618619 - AluSg/x SINE Alu -1 308 216 1087 162 113 0 chr1 1575049 1575278 -280618386 + AluSx SINE Alu 58 312 0 718 205 0 32 chr1 1575286 1575442 -280618222 + FRAM SINE Alu 1 151 -15 865 140 12 30 chr1 1577771 1577935 -280615729 - AluJo SINE Alu -151 161 1 2383 81 3 0 chr1 1577944 1578254 -280615410 - AluY SINE Alu 0 311 1 1552 262 27 20 chr1 1578312 1578823 -280614841 + L1MB5 LINE L1 5659 6173 -1 1021 196 149 6 chr1 1580608 1580950 -280612714 + MLT1C LTR MaLR 6 396 -71 500 283 12 12 chr1 1581949 1582115 -280611549 + MER46C DNA MER2_type 1 166 -172 2273 81 0 3 chr1 1583501 1583797 -280609867 + AluY SINE Alu 1 295 -16 1614 191 3 13 chr1 1583808 1584107 -280609557 + AluJo SINE Alu 2 297 -15 627 265 58 51 chr1 1584108 1584222 -280609442 - L1ME LINE L1 -585 5585 5473 2395 61 0 3 chr1 1584222 1584517 -280609147 - AluY SINE Alu -17 294 1 627 265 58 51 chr1 1584517 1584659 -280609005 - L1ME LINE L1 -697 5473 5327 1240 77 12 6 chr1 1584662 1584831 -280608833 - AluSg/x SINE Alu -20 290 121 873 130 0 125 chr1 1584896 1585080 -280608584 - FRAM SINE Alu -15 161 1 317 244 125 12 chr1 1585082 1585242 -280608422 - L1ME LINE L1 -815 5331 5154 563 234 115 40 chr1 1585569 1585795 -280607869 - HAL1 LINE L1 -950 1557 1315 570 235 47 6 chr1 1586027 1586197 -280607467 - Charlie1b DNA MER1_type -1 522 346 285 169 200 0 chr1 1586215 1586280 -280607384 - Charlie1b DNA MER1_type -292 231 154 2205 102 7 3 chr1 1586398 1586703 -280606961 - AluSq SINE Alu -7 306 1 217 328 35 53 chr1 1586705 1586876 -280606788 + L2 LINE L2 1999 2166 -1148 213 288 82 14 chr1 1587024 1587170 -280606494 + L2 LINE L2 2862 3017 -296 926 167 13 9 chr1 1590847 1591161 -280602503 + (CTCA)n Simple_repeat Simple_repeat 1 315 0 2139 121 0 3 chr1 1591908 1592205 -280601459 + AluSg SINE Alu 2 297 -13 22 56 0 0 chr1 1592311 1592347 -280601317 + AT_rich Low_complexity Low_complexity 1 36 0 2340 81 0 0 chr1 1594239 1594535 -280599129 - AluSx SINE Alu -16 296 1 2253 119 0 0 chr1 1595021 1595331 -280598333 - AluSx SINE Alu -2 310 1 339 218 26 0 chr1 1595334 1595412 -280598252 - AluJ/FRAM SINE Alu 0 302 223 2283 101 0 0 chr1 1595475 1595782 -280597882 - AluSx SINE Alu -5 307 1 22 0 0 0 chr1 1596057 1596079 -280597585 + GC_rich Low_complexity Low_complexity 1 22 0 236 286 86 19 chr1 1596838 1596943 -280596721 - L1ME3A LINE L1 -40 6130 6019 336 357 96 43 chr1 1597044 1597328 -280596336 - L1MC5 LINE L1 -33 7928 7614 1980 112 39 3 chr1 1597328 1597613 -280596051 - AluSx SINE Alu -17 295 1 336 357 96 43 chr1 1597613 1597743 -280595921 - L1MC5 LINE L1 -347 7614 7492 1353 280 64 22 chr1 1597750 1598382 -280595282 - L1MC4 LINE L1 -6 8036 7291 2409 62 10 0 chr1 1598382 1598690 -280594974 + AluY SINE Alu 1 311 0 838 215 61 65 chr1 1599156 1599536 -280594128 + MLT1C LTR MaLR 47 390 0 229 320 39 16 chr1 1599653 1599781 -280593883 - L1P LINE L1 -780 5385 5255 2315 80 3 0 chr1 1599823 1600123 -280593541 - AluY SINE Alu -10 301 1 2215 104 0 0 chr1 1600174 1600472 -280593192 - AluSx SINE Alu -14 298 1 319 367 30 60 chr1 1600473 1600672 -280592992 - L1M4 LINE L1 -975 5171 4979 480 254 99 87 chr1 1600745 1601100 -280592564 - L1M4 LINE L1 -1304 4842 4484 2324 87 0 10 chr1 1601100 1601412 -280592252 - AluY SINE Alu 0 311 3 728 319 27 42 chr1 1601442 1601714 -280591950 - L1MC5 LINE L1 -35 7926 7663 2311 98 0 0 chr1 1601714 1602011 -280591653 - AluSx SINE Alu -15 297 1 728 319 27 42 chr1 1602011 1602220 -280591444 - L1MC5 LINE L1 -298 7663 7452 706 257 88 38 chr1 1602231 1602560 -280591104 - L1M4 LINE L1 -1638 4508 4152 2323 88 3 0 chr1 1602560 1602866 -280590798 - AluSp SINE Alu -6 307 1 706 257 88 38 chr1 1602866 1603054 -280590610 - L1M4 LINE L1 -1994 4152 3975 2368 103 0 0 chr1 1603056 1603368 -280590296 - AluSx SINE Alu 0 312 1 2089 143 0 0 chr1 1603724 1604032 -280589632 + AluSx SINE Alu 1 308 -4 2432 65 3 0 chr1 1604073 1604381 -280589283 - AluY SINE Alu -2 309 1 2245 89 24 0 chr1 1604497 1604790 -280588874 - AluSx SINE Alu -10 302 3 368 312 103 24 chr1 1604903 1605243 -280588421 - HAL1 LINE L1 -2136 371 5 1124 148 0 6 chr1 1605815 1605997 -280587667 - AluJb SINE Alu -1 311 131 2519 58 0 0 chr1 1605997 1606308 -280587356 - AluY SINE Alu 0 311 1 623 182 0 45 chr1 1606427 1606559 -280587105 + AluJb SINE Alu 2 127 -185 1685 130 22 4 chr1 1606659 1606936 -280586728 + AluSg SINE Alu 26 307 -3 1226 193 100 15 chr1 1606936 1607267 -280586397 - MSTB LTR MaLR -66 360 2 919 253 58 16 chr1 1607267 1607565 -280586099 + MLT1A1 LTR MaLR 55 365 0 267 254 30 0 chr1 1607671 1607763 -280585901 + L1MEc LINE L1 1178 1233 -4886 370 294 109 42 chr1 1607937 1608175 -280585489 + L1M4 LINE L1 3652 3905 -2241 280 208 94 38 chr1 1608188 1608294 -280585370 - MER31A LTR ERV1 -21 464 353 1450 114 5 0 chr1 1610432 1610633 -280583031 + AluSg/x SINE Alu 66 267 -43 1007 169 0 6 chr1 1610633 1610843 -280582821 + AluSp SINE Alu 120 328 0 1091 184 5 19 chr1 1610843 1611049 -280582615 - AluJb SINE Alu -27 285 83 436 241 17 0 chr1 1611050 1611082 -280582582 - L1M4 LINE L1 -457 5727 5697 2096 118 3 3 chr1 1611082 1611378 -280582286 - AluSx SINE Alu -16 296 1 436 241 17 0 chr1 1611378 1611461 -280582203 - L1M4 LINE L1 -487 5697 5610 1948 155 7 0 chr1 1611461 1611757 -280581907 - AluSx SINE Alu -14 298 1 1220 172 48 99 chr1 1611757 1612071 -280581593 - AluJb SINE Alu -14 298 1 2369 66 0 10 chr1 1612072 1612373 -280581291 - AluY SINE Alu -13 298 1 804 164 0 46 chr1 1612373 1612525 -280581139 - AluJo SINE Alu -167 145 1 187 308 77 0 chr1 1612981 1613059 -280580605 - L2 LINE L2 -939 2375 2292 2328 51 10 3 chr1 1614090 1614384 -280579280 - AluY SINE Alu -15 296 1 1621 133 10 47 chr1 1614384 1614685 -280578979 - AluSx SINE Alu -22 290 1 369 210 43 43 chr1 1615539 1615677 -280577987 + (CGGGG)n Simple_repeat Simple_repeat 4 141 0 2474 47 0 0 chr1 1615783 1616081 -280577583 + AluSx SINE Alu 1 298 -14 1680 153 36 19 chr1 1616430 1616737 -280576927 - AluJb SINE Alu 0 312 1 962 96 75 91 chr1 1618368 1618526 -280575138 - MLT2D LTR ERVL -137 277 121 2196 88 0 23 chr1 1618526 1618831 -280574833 - AluY SINE Alu -13 298 1 962 96 75 91 chr1 1618831 1618871 -280574793 - MLT2D LTR ERVL -293 121 82 541 246 15 0 chr1 1618871 1619005 -280574659 + L1M3 LINE L1 5686 5821 -350 2177 102 3 0 chr1 1619130 1619424 -280574240 - AluY SINE Alu -16 295 1 2290 75 0 3 chr1 1619424 1619718 -280573946 - AluY SINE Alu -18 293 1 2229 82 17 0 chr1 1619718 1620012 -280573652 - AluSx SINE Alu -13 299 1 1040 278 49 11 chr1 1620015 1620482 -280573182 - L1M4 LINE L1 -2685 3461 2977 418 235 10 0 chr1 1620619 1620717 -280572947 - MER81 DNA DNA -15 99 1 203 280 56 0 chr1 1620794 1620937 -280572727 + (TAGG)n Simple_repeat Simple_repeat 4 154 0 * 329 292 39 7 chr1 1620895 1621049 -280572615 + (TATG)n Simple_repeat Simple_repeat 4 162 0 218 396 0 0 chr1 1621167 1621321 -280572343 + (TG)n Simple_repeat Simple_repeat 2 155 0 * 275 291 53 0 chr1 1621292 1621517 -280572147 + (TATG)n Simple_repeat Simple_repeat 1 236 0 180 0 0 0 chr1 1621807 1621827 -280571837 + (CA)n Simple_repeat Simple_repeat 2 21 0 2379 96 3 0 chr1 1621875 1622187 -280571477 + AluSp SINE Alu 1 313 0 2393 91 0 0 chr1 1622203 1622512 -280571152 + AluSc SINE Alu 1 309 0 2055 130 0 10 chr1 1622561 1622869 -280570795 + AluJb SINE Alu 1 305 -7 275 237 99 30 chr1 1623252 1623383 -280570281 + L1MC5 LINE L1 7361 7500 -461 331 263 94 12 chr1 1623401 1623561 -280570103 + L1M4 LINE L1 4836 5008 -1138 251 269 2 7 chr1 1623823 1624253 -280569411 + (CA)n Simple_repeat Simple_repeat 1 428 0 460 298 0 0 chr1 1624271 1624432 -280569232 + (CA)n Simple_repeat Simple_repeat 1 161 0 230 228 0 11 chr1 1624457 1624549 -280569115 + (CA)n Simple_repeat Simple_repeat 1 91 0 335 340 0 0 chr1 1624985 1625135 -280568529 + (TG)n Simple_repeat Simple_repeat 1 150 0 2376 61 0 19 chr1 1626739 1627077 -280566587 + AluY SINE Alu 1 311 0 370 250 43 0 chr1 1627659 1627775 -280565889 + L1M4 LINE L1 4897 5017 -1129 381 259 91 15 chr1 1628523 1628720 -280564944 + MER89 LTR ERV1 272 483 -76 768 261 123 23 chr1 1629621 1630012 -280563652 - MLT1D LTR MaLR -7 498 69 2247 85 3 0 chr1 1630518 1630811 -280562853 - AluSx SINE Alu -18 294 1 1515 130 9 4 chr1 1630931 1631161 -280562503 + AluJb SINE Alu 1 231 -81 2215 119 0 0 chr1 1631452 1631762 -280561902 + AluJo SINE Alu 1 310 -2 335 228 0 33 chr1 1631771 1631951 -280561713 + (TG)n Simple_repeat Simple_repeat 1 174 0 338 309 16 24 chr1 1631956 1632082 -280561582 + (CGTG)n Simple_repeat Simple_repeat 2 126 0 2221 111 0 0 chr1 1633939 1634236 -280559428 - AluSg SINE Alu -13 297 1 403 111 0 0 chr1 1634343 1634406 -280559258 - AluJo SINE Alu -7 295 233 678 254 94 11 chr1 1634410 1634470 -280559194 - AluJo SINE Alu -116 196 142 252 100 0 0 chr1 1634470 1634510 -280559154 + (TA)n Simple_repeat Simple_repeat 2 41 0 678 254 94 11 chr1 1634510 1634630 -280559034 - AluJo SINE Alu -170 142 1 2304 93 6 10 chr1 1634650 1634962 -280558702 - AluY SINE Alu 0 311 1 326 169 31 0 chr1 1634962 1635027 -280558637 + MSTB LTR MaLR 358 424 -2 1793 149 3 29 chr1 1635652 1635960 -280557704 - AluJb SINE Alu -12 300 1 197 320 33 33 chr1 1637730 1637852 -280555812 + L2 LINE L2 3166 3287 -26 2218 100 0 19 chr1 1640417 1640727 -280552937 - AluSx SINE Alu -3 309 6 514 344 104 51 chr1 1640752 1640990 -280552674 - HAL1b LINE L1 -1033 3317 3093 1976 136 7 13 chr1 1640990 1641298 -280552366 - AluJb SINE Alu -6 306 1 514 344 104 51 chr1 1641298 1641406 -280552258 - HAL1b LINE L1 -1257 3093 2992 2274 79 3 13 chr1 1641406 1641710 -280551954 - AluSq SINE Alu -12 301 1 514 344 104 51 chr1 1641710 1641747 -280551917 - HAL1b LINE L1 -1358 2992 1 423 348 112 38 chr1 1642579 1643540 -280550124 - L1MEd LINE L1 -4863 1256 224 1709 132 16 42 chr1 1644339 1644649 -280549015 + AluJo SINE Alu 5 306 -6 333 339 52 64 chr1 1645107 1645340 -280548324 - L1MC4 LINE L1 0 8042 7813 281 253 99 0 chr1 1646938 1647029 -280546635 - MER91B DNA MER1_type -90 100 1 1834 134 21 3 chr1 1649139 1649429 -280544235 - AluJb SINE Alu -17 295 1 1355 298 66 59 chr1 1649431 1649488 -280544176 - L1ME LINE L1 -579 5652 5597 832 266 19 10 chr1 1649488 1649695 -280543969 - MER3 DNA MER1_type 0 209 1 1355 298 66 59 chr1 1649695 1650335 -280543329 - L1ME LINE L1 -634 5597 4963 2272 91 0 3 chr1 1650335 1650633 -280543031 + AluSq SINE Alu 3 299 -14 1355 298 66 59 chr1 1650633 1650972 -280542692 - L1ME LINE L1 -1268 4963 4605 1746 157 17 10 chr1 1650972 1651266 -280542398 + AluJo SINE Alu 1 296 -16 1355 298 66 59 chr1 1651266 1651328 -280542336 - L1ME LINE L1 -1626 4605 4545 295 145 29 14 chr1 1651328 1651397 -280542267 + CT-rich Low_complexity Low_complexity 3 72 0 273 281 47 0 chr1 1651411 1651574 -280542090 - L1MEc LINE L1 -3921 2322 2163 1609 104 0 4 chr1 1651677 1651908 -280541756 + AluSq SINE Alu 1 230 -83 658 141 0 0 chr1 1652049 1652141 -280541523 - AluS SINE Alu -221 92 1 2484 237 60 50 chr1 1652175 1652566 -280541098 + L1ME1 LINE L1 4528 4914 -1252 1855 141 115 12 chr1 1652566 1652906 -280540758 + THE1C LTR MaLR 1 375 0 2484 237 60 50 chr1 1652906 1653295 -280540369 + L1ME1 LINE L1 4914 5298 -868 2250 91 0 13 chr1 1653295 1653593 -280540071 + AluSq SINE Alu 6 299 -14 2484 237 60 50 chr1 1653593 1654426 -280539238 + L1ME1 LINE L1 5298 6166 0 1863 146 17 3 chr1 1654475 1654763 -280538901 + AluSx SINE Alu 1 292 -20 363 152 0 43 chr1 1654763 1654855 -280538809 + GA-rich Low_complexity Low_complexity 1 88 0 808 100 5 58 chr1 1654861 1655051 -280538613 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 1315 147 19 0 chr1 1655139 1655363 -280538301 + AluJb SINE Alu 97 324 0 403 217 70 10 chr1 1655369 1655489 -280538175 + AluJo SINE Alu 1 112 -190 216 111 0 0 chr1 1655489 1655525 -280538139 + (TA)n Simple_repeat Simple_repeat 2 37 0 403 217 70 10 chr1 1655525 1655652 -280538012 + AluJo SINE Alu 112 295 -7 2221 111 0 0 chr1 1655759 1656056 -280537608 + AluSg SINE Alu 1 297 -13 324 318 16 24 chr1 1657761 1657887 -280535777 + (CACG)n Simple_repeat Simple_repeat 2 126 0 327 238 0 28 chr1 1657892 1658073 -280535591 + (CA)n Simple_repeat Simple_repeat 1 176 0 2184 121 0 0 chr1 1658078 1658385 -280535279 - AluJo SINE Alu -5 307 1 1501 135 9 4 chr1 1658675 1658905 -280534759 - AluJb SINE Alu -81 231 1 2261 82 3 0 chr1 1659025 1659318 -280534346 + AluSx SINE Alu 1 294 -18 777 261 123 23 chr1 1659824 1660215 -280533449 + MLT1D LTR MaLR 69 498 -7 360 300 148 22 chr1 1661544 1661814 -280531850 + HAL1 LINE L1 903 1206 -1301 189 0 0 0 chr1 1662030 1662051 -280531613 + (A)n Simple_repeat Simple_repeat 1 21 0 2190 88 0 36 chr1 1662057 1662365 -280531299 - AluSg1 SINE Alu -12 297 1 579 243 32 46 chr1 1662370 1662588 -280531076 + L1MB2 LINE L1 5941 6155 -16 2333 74 0 13 chr1 1662599 1662911 -280530753 - AluY SINE Alu -3 308 1 231 173 0 0 chr1 1673563 1673615 -280520049 + (CAG)n Simple_repeat Simple_repeat 3 54 0 603 105 28 50 chr1 1679029 1679210 -280514454 + GA-rich Low_complexity Low_complexity 1 177 0 902 140 7 7 chr1 1680335 1680478 -280513186 - FRAM SINE Alu -30 146 4 544 236 55 83 chr1 1680485 1680905 -280512759 - Charlie2 DNA MER1_type -87 2775 2368 2377 73 0 3 chr1 1680914 1681216 -280512448 + AluY SINE Alu 6 306 -5 2306 68 0 40 chr1 1681219 1681540 -280512124 + AluY SINE Alu 4 311 0 2280 98 0 13 chr1 1681542 1681858 -280511806 + AluSx SINE Alu 1 312 0 2543 52 0 3 chr1 1681876 1682183 -280511481 + AluY SINE Alu 1 306 -5 2076 124 3 3 chr1 1682471 1682777 -280510887 - AluY SINE Alu -5 306 1 2305 71 0 3 chr1 1682777 1683071 -280510593 - AluY SINE Alu -18 293 1 2229 82 17 0 chr1 1683071 1683365 -280510299 - AluSx SINE Alu -13 299 1 1028 281 49 11 chr1 1683368 1683835 -280509829 - L1M4 LINE L1 -2685 3461 2977 418 235 10 0 chr1 1683972 1684070 -280509594 - MER81 DNA DNA -15 99 1 277 307 40 7 chr1 1684214 1684364 -280509300 + (TATG)n Simple_repeat Simple_repeat 4 158 0 225 395 0 0 chr1 1684450 1684602 -280509062 + (TG)n Simple_repeat Simple_repeat 2 153 0 266 312 52 0 chr1 1684642 1684796 -280508868 + (CGTA)n Simple_repeat Simple_repeat 2 163 0 265 391 0 0 chr1 1684821 1685000 -280508664 + (TG)n Simple_repeat Simple_repeat 2 180 0 218 318 53 7 chr1 1685006 1685157 -280508507 + (TACG)n Simple_repeat Simple_repeat 4 161 0 * 236 317 48 0 chr1 1685134 1685301 -280508363 + (TATG)n Simple_repeat Simple_repeat 4 178 0 202 348 17 0 chr1 1685370 1685488 -280508176 + (TATG)n Simple_repeat Simple_repeat 3 122 0 180 0 0 0 chr1 1685753 1685773 -280507891 + (CA)n Simple_repeat Simple_repeat 2 21 0 2394 93 3 0 chr1 1685821 1686133 -280507531 + AluSp SINE Alu 1 313 0 2393 91 0 0 chr1 1686149 1686458 -280507206 + AluSc SINE Alu 1 309 0 2023 134 0 10 chr1 1686507 1686814 -280506850 + AluJb SINE Alu 1 304 -8 275 237 99 30 chr1 1687197 1687328 -280506336 + L1MC5 LINE L1 7361 7500 -461 331 263 94 12 chr1 1687346 1687506 -280506158 + L1M4 LINE L1 4836 5008 -1138 409 278 3 0 chr1 1687799 1688409 -280505255 + (CA)n Simple_repeat Simple_repeat 1 612 0 230 228 0 11 chr1 1688434 1688526 -280505138 + (CA)n Simple_repeat Simple_repeat 1 91 0 335 340 0 0 chr1 1688962 1689112 -280504552 + (TG)n Simple_repeat Simple_repeat 1 150 0 820 117 0 83 chr1 1689838 1689983 -280503681 - FLAM_C SINE Alu 0 133 1 2197 87 3 7 chr1 1690659 1690957 -280502707 - AluSq SINE Alu -16 297 1 258 192 0 19 chr1 1690959 1691011 -280502653 + L3 LINE CR1 1369 1419 -158 1291 164 18 0 chr1 1691600 1691825 -280501839 + AluSq SINE Alu 3 231 -82 31 44 0 0 chr1 1691966 1692011 -280501653 + AT_rich Low_complexity Low_complexity 1 45 0 2387 61 0 3 chr1 1692025 1692319 -280501345 - AluY SINE Alu -16 295 3 1763 123 0 73 chr1 1693409 1693723 -280499941 - AluJb SINE Alu 0 430 146 2114 102 0 39 chr1 1693723 1693858 -280499806 + AluSq SINE Alu 2 141 -172 2426 65 3 0 chr1 1693858 1694164 -280499500 + AluY SINE Alu 1 307 -4 2114 102 0 39 chr1 1694164 1694333 -280499331 + AluSq SINE Alu 141 294 -19 1763 123 0 73 chr1 1694333 1694466 -280499198 - AluJb SINE Alu -284 146 5 1541 192 20 3 chr1 1696658 1696950 -280496714 - AluJb SINE Alu -15 297 1 2315 95 3 0 chr1 1696958 1697262 -280496402 - AluSp SINE Alu -8 305 1 1914 124 6 43 chr1 1697328 1697471 -280496193 + AluSg SINE Alu 1 148 -162 2388 84 0 0 chr1 1697471 1697779 -280495885 + AluY SINE Alu 1 308 -3 1914 124 6 43 chr1 1697779 1697957 -280495707 + AluSg SINE Alu 148 310 0 2272 95 0 0 chr1 1697972 1698266 -280495398 + AluSg SINE Alu 1 294 -16 844 121 0 35 chr1 1701478 1701641 -280492023 + FLAM_C SINE Alu 8 143 0 772 254 114 7 chr1 1701810 1702193 -280491471 + L1MC4 LINE L1 6478 6936 -1106 200 163 0 112 chr1 1703165 1703263 -280490401 + C-rich Low_complexity Low_complexity 1 87 0 193 104 0 42 chr1 1703617 1703665 -280489999 + (CGG)n Simple_repeat Simple_repeat 2 47 0 23 0 0 0 chr1 1704387 1704410 -280489254 + AT_rich Low_complexity Low_complexity 1 23 0 2251 71 3 26 chr1 1704417 1704726 -280488938 + AluY SINE Alu 1 302 -9 1948 121 0 20 chr1 1705103 1705400 -280488264 - AluSx SINE Alu -21 291 1 2503 55 0 7 chr1 1705572 1705880 -280487784 + AluY SINE Alu 1 306 -5 2404 95 0 0 chr1 1705991 1706299 -280487365 - AluSq SINE Alu -9 304 1 2288 90 0 3 chr1 1706447 1706747 -280486917 + AluY SINE Alu 1 299 -12 1315 142 5 5 chr1 1706918 1707115 -280486549 + AluSp SINE Alu 1 197 -116 353 43 0 0 chr1 1707115 1707162 -280486502 + AluSp SINE Alu 87 133 -170 1546 176 17 7 chr1 1707167 1707462 -280486202 + AluSp SINE Alu 3 300 -13 325 296 102 0 chr1 1707773 1707881 -280485783 + MIR SINE MIR 112 230 -32 1641 159 69 28 chr1 1708121 1708410 -280485254 - AluJb SINE Alu 0 312 12 2396 89 0 0 chr1 1708496 1708789 -280484875 - AluSg SINE Alu -17 293 1 264 371 108 36 chr1 1708943 1708979 -280484685 - L2 LINE L2 -4 3268 3236 1841 116 81 11 chr1 1708979 1709263 -280484401 - AluSg SINE Alu -6 304 1 264 371 108 36 chr1 1709263 1709533 -280484131 - L2 LINE L2 -36 3236 2940 218 320 120 0 chr1 1709554 1709629 -280484035 + L2 LINE L2 3187 3270 -2 1890 125 72 0 chr1 1709730 1710009 -280483655 + AluSx SINE Alu 1 299 -13 184 372 33 0 chr1 1710351 1710472 -280483192 + L2 LINE L2 2932 3056 -257 198 203 275 0 chr1 1710539 1710608 -280483056 + L2 LINE L2 3199 3286 -27 491 149 20 155 chr1 1710734 1710834 -280482830 + Charlie1a DNA MER1_type 1 76 -2685 2171 50 54 4 chr1 1710834 1711111 -280482553 - AluY SINE Alu -20 291 1 491 149 20 155 chr1 1711111 1711158 -280482506 + Charlie1a DNA MER1_type 76 128 -1327 1898 171 0 10 chr1 1711197 1711507 -280482157 + AluJb SINE Alu 1 307 -5 1291 221 81 23 chr1 1711515 1711699 -280481965 + Charlie1a DNA MER1_type 1040 1212 -1549 2506 75 3 0 chr1 1711699 1712005 -280481659 - AluY SINE Alu -4 307 1 1291 221 81 23 chr1 1712005 1712213 -280481451 + Charlie1a DNA MER1_type 1212 1455 0 298 307 0 0 chr1 1712904 1712992 -280480672 - L2 LINE L2 -285 3028 2941 355 300 100 12 chr1 1713208 1713368 -280480296 - MIR SINE MIR -5 257 84 350 274 46 57 chr1 1713741 1713792 -280479872 - L1ME4a LINE L1 0 6121 6071 895 130 0 36 chr1 1713792 1713930 -280479734 + AluJo SINE Alu 1 133 -169 350 274 46 57 chr1 1713930 1714053 -280479611 - L1ME4a LINE L1 -50 6071 5949 2401 90 7 0 chr1 1714112 1714411 -280479253 - AluSx SINE Alu -11 301 1 327 236 285 8 chr1 1714545 1714668 -280478996 + MIR SINE MIR 58 214 -48 492 208 178 10 chr1 1714765 1714866 -280478798 + FLAM_C SINE Alu 3 120 -23 210 37 0 0 chr1 1714910 1714937 -280478727 + (TC)n Simple_repeat Simple_repeat 1 27 0 792 165 16 0 chr1 1714977 1715098 -280478566 + AluJo SINE Alu 134 256 -56 1140 205 161 27 chr1 1715201 1715605 -280478059 - MLT1C LTR MaLR -2 465 8 962 195 12 0 chr1 1715757 1715921 -280477743 + FRAM SINE Alu 1 166 0 1986 167 0 3 chr1 1715937 1716249 -280477415 + AluSx SINE Alu 1 311 -1 2059 132 84 0 chr1 1716260 1716571 -280477093 + MER1B DNA MER1_type 1 337 0 2018 123 3 48 chr1 1716616 1716797 -280476867 - AluSg SINE Alu -8 302 139 2110 116 7 13 chr1 1716797 1717107 -280476557 - AluSx SINE Alu -4 308 1 2018 123 3 48 chr1 1717107 1717241 -280476423 - AluSg SINE Alu -171 139 1 1034 112 7 20 chr1 1717605 1717757 -280475907 - AluSg/x SINE Alu -23 289 140 282 159 0 0 chr1 1717757 1717801 -280475863 - Alu SINE Alu -256 44 1 438 307 116 24 chr1 1717842 1718223 -280475441 - MLT1H LTR MaLR -3 546 131 895 161 0 0 chr1 1718230 1718373 -280475291 + FLAM_C SINE Alu 1 143 0 264 268 0 0 chr1 1718547 1718603 -280475061 - L2 LINE L2 -9 3263 3208 277 478 25 76 chr1 1719152 1719466 -280474198 + AluSq SINE Alu 1 298 -5 2408 72 0 3 chr1 1719537 1719829 -280473835 - AluY SINE Alu -20 291 1 1833 114 23 75 chr1 1720709 1720896 -280472768 - AluSx SINE Alu -9 303 137 2544 77 0 0 chr1 1720896 1721207 -280472457 - AluY SINE Alu 0 311 1 1833 114 23 75 chr1 1721207 1721325 -280472339 - AluSx SINE Alu -175 137 14 1721 171 0 23 chr1 1721594 1721893 -280471771 + AluJo SINE Alu 1 292 -20 230 226 418 0 chr1 1722026 1722172 -280471492 + MER20 DNA MER1_type 6 212 -7 1457 163 42 54 chr1 1722320 1722651 -280471013 - L1MB5 LINE L1 -10 6164 5838 2370 86 0 16 chr1 1722667 1722971 -280470693 - AluY SINE Alu -11 300 2 972 81 89 0 chr1 1722971 1723095 -280470569 - AluSq/x SINE Alu -178 135 1 1277 173 28 4 chr1 1723095 1723344 -280470320 - L1MB5 LINE L1 -356 5824 5570 1958 118 36 4 chr1 1723641 1723920 -280469744 + AluSx SINE Alu 1 288 -24 2105 135 0 3 chr1 1723931 1724234 -280469430 + AluSc SINE Alu 1 302 -7 207 69 0 0 chr1 1724561 1724590 -280469074 + (TG)n Simple_repeat Simple_repeat 2 30 0 2088 123 0 3 chr1 1724590 1724874 -280468790 - AluSg SINE Alu -27 283 1 1304 141 0 5 chr1 1724874 1725066 -280468598 - AluSx SINE Alu -11 301 111 757 110 0 0 chr1 1725146 1725246 -280468418 - AluSx SINE Alu -210 102 3 2006 137 0 23 chr1 1725257 1725556 -280468108 - AluSx SINE Alu -20 292 1 629 252 0 0 chr1 1726022 1726145 -280467519 - FLAM_A SINE Alu -9 124 2 2509 84 0 0 chr1 1726377 1726685 -280466979 + AluY SINE Alu 1 308 -3 347 144 48 24 chr1 1726761 1726858 -280466806 + L1MC4 LINE L1 7885 8042 0 2382 97 0 0 chr1 1726902 1727200 -280466464 - AluSx SINE Alu -14 298 1 327 236 285 8 chr1 1727334 1727457 -280466207 + MIR SINE MIR 58 214 -48 492 208 178 10 chr1 1727554 1727655 -280466009 + FLAM_C SINE Alu 3 120 -23 210 37 0 0 chr1 1727699 1727726 -280465938 + (TC)n Simple_repeat Simple_repeat 1 27 0 792 165 16 0 chr1 1727766 1727887 -280465777 + FRAM SINE Alu 1 120 -56 1140 205 161 27 chr1 1727990 1728394 -280465270 - MLT1C LTR MaLR -2 465 8 962 195 12 0 chr1 1728546 1728710 -280464954 + FRAM SINE Alu 1 166 0 1986 167 0 3 chr1 1728726 1729038 -280464626 + AluSx SINE Alu 1 311 -1 2059 132 84 0 chr1 1729049 1729360 -280464304 + MER1B DNA MER1_type 1 337 0 2018 123 3 48 chr1 1729405 1729586 -280464078 - AluSg SINE Alu -8 302 139 2110 116 7 13 chr1 1729586 1729896 -280463768 - AluSx SINE Alu -4 308 1 2018 123 3 48 chr1 1729896 1730030 -280463634 - AluSg SINE Alu -171 139 1 1034 112 7 20 chr1 1730394 1730546 -280463118 - AluSg/x SINE Alu -23 289 140 282 159 0 0 chr1 1730546 1730590 -280463074 - Alu SINE Alu -256 44 1 438 307 116 24 chr1 1730631 1731012 -280462652 - MLT1H LTR MaLR -3 546 131 895 161 0 0 chr1 1731019 1731162 -280462502 + FLAM_C SINE Alu 1 143 0 264 268 0 0 chr1 1731336 1731392 -280462272 - L2 LINE L2 -9 3263 3208 424 318 132 38 chr1 1731851 1731941 -280461723 - L2 LINE L2 -529 2785 2705 1604 181 85 0 chr1 1731941 1732222 -280461442 + AluJo SINE Alu 1 305 -7 424 318 132 38 chr1 1732222 1732502 -280461162 - L2 LINE L2 -609 2705 2380 1929 134 0 28 chr1 1732766 1733049 -280460615 - AluSx SINE Alu -37 275 1 328 280 103 37 chr1 1733058 1733262 -280460402 - L2 LINE L2 -1390 1924 1704 1918 112 40 11 chr1 1733262 1733539 -280460125 - AluSx SINE Alu 0 312 28 1321 166 86 43 chr1 1733764 1734042 -280459622 + AluJo SINE Alu 22 311 -1 2219 121 7 0 chr1 1734058 1734355 -280459309 + AluSx SINE Alu 1 299 -13 2351 86 3 13 chr1 1735004 1735317 -280458347 - AluY SINE Alu -1 310 1 2322 93 7 7 chr1 1735418 1735719 -280457945 - AluSg1 SINE Alu -8 301 1 2127 117 23 3 chr1 1735750 1736049 -280457615 + AluSq SINE Alu 1 305 -8 601 150 97 9 chr1 1736759 1736872 -280456792 + L2 LINE L2 3188 3310 -3 1180 60 142 87 chr1 1736878 1736949 -280456715 - MER30 DNA MER1_type 0 230 164 2201 98 21 0 chr1 1736949 1737235 -280456429 - AluSq SINE Alu -21 292 1 1180 60 142 87 chr1 1737235 1737246 -280456418 - MER30 DNA MER1_type -66 164 155 2445 76 0 0 chr1 1737246 1737547 -280456117 - AluY SINE Alu -10 301 1 1180 60 142 87 chr1 1737547 1737681 -280455983 - MER30 DNA MER1_type -75 155 1 296 287 74 0 chr1 1737685 1737807 -280455857 + L1MC/D LINE L1 5736 5866 -1942 2098 117 23 7 chr1 1737980 1738280 -280455384 + AluSq SINE Alu 1 305 -8 2197 97 0 0 chr1 1738626 1738904 -280454760 - AluY SINE Alu -22 289 12 2442 84 0 0 chr1 1738931 1739239 -280454425 - AluY SINE Alu -3 308 1 2229 93 26 10 chr1 1739874 1740176 -280453488 - AluSg1 SINE Alu -1 308 2 550 176 213 0 chr1 1740193 1740301 -280453363 - FLAM_C SINE Alu -2 131 1 1734 165 30 3 chr1 1741459 1741756 -280451908 + AluJb SINE Alu 1 305 -7 1349 156 45 102 chr1 1741985 1742299 -280451365 - AluJo SINE Alu -16 296 1 482 190 86 0 chr1 1742309 1742425 -280451239 - L1MC4 LINE L1 -480 7562 7437 207 0 0 0 chr1 1742737 1742760 -280450904 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1185 215 70 37 chr1 1742773 1743043 -280450621 - AluJo SINE Alu -33 279 1 2019 104 0 4 chr1 1743089 1743358 -280450306 - AluSx SINE Alu -10 302 35 266 98 0 44 chr1 1743494 1743546 -280450118 - Alu SINE Alu -9 291 249 1336 98 0 0 chr1 1743562 1743736 -280449928 - AluY SINE Alu -11 300 127 2222 142 6 0 chr1 1743774 1744127 -280449537 - L1PA16 LINE L1 -6 6160 5806 1285 47 0 35 chr1 1744152 1744322 -280449342 - L1PA5 LINE L1 -4 6150 5987 988 58 0 50 chr1 1744352 1744491 -280449173 - AluY SINE Alu -179 132 1 261 270 0 16 chr1 1744493 1744557 -280449107 + C-rich Low_complexity Low_complexity 1 62 0 325 129 0 47 chr1 1744716 1744816 -280448848 - AluJo SINE Alu -167 135 1 * 1243 224 101 48 chr1 1744816 1744900 -280448764 - MER119 DNA MER1_type -95 488 410 2184 130 3 0 chr1 1744900 1745201 -280448463 + AluSx SINE Alu 5 306 -6 1243 224 101 48 chr1 1745201 1745551 -280448113 - MER119 DNA MER1_type -173 410 31 1090 140 0 121 chr1 1746283 1746548 -280447116 + Tigger7 DNA MER2_type 2258 2490 -1 2308 101 0 0 chr1 1747494 1747792 -280445872 + AluSc SINE Alu 1 298 -11 854 118 0 52 chr1 1747794 1747929 -280445735 + FLAM_C SINE Alu 3 130 -3 1399 194 15 23 chr1 1747935 1748198 -280445466 + AluJo SINE Alu 38 298 -14 211 233 256 0 chr1 1748199 1748289 -280445375 - L2 LINE L2 -1 3271 3159 2480 43 7 16 chr1 1748496 1748800 -280444864 - AluY SINE Alu -10 301 1 2036 139 13 7 chr1 1748870 1749047 -280444617 - AluSx SINE Alu -2 310 129 2300 96 0 0 chr1 1749047 1749339 -280444325 - AluSg SINE Alu -16 294 3 2036 139 13 7 chr1 1749339 1749463 -280444201 - AluSx SINE Alu -183 129 7 682 180 0 43 chr1 1749463 1749594 -280444070 - FLAM_A SINE Alu -175 127 1 562 326 66 30 chr1 1749930 1750234 -280443430 + L2 LINE L2 2999 3313 0 292 332 104 26 chr1 1750849 1751117 -280442547 - L2 LINE L2 -481 2833 2545 1294 153 139 40 chr1 1751519 1751690 -280441974 - AluJo SINE Alu -11 301 92 2337 72 0 7 chr1 1751690 1751981 -280441683 + AluY SINE Alu 1 289 -22 1294 153 139 40 chr1 1751981 1752083 -280441581 - AluJo SINE Alu -220 92 1 2334 97 3 0 chr1 1752160 1752458 -280441206 - AluSp SINE Alu -14 299 1 31 0 0 0 chr1 1752625 1752656 -280441008 + AT_rich Low_complexity Low_complexity 1 31 0 1897 74 100 41 chr1 1752661 1752788 -280440876 - AluSg SINE Alu -25 285 167 2472 76 3 3 chr1 1752788 1753091 -280440573 - AluSp SINE Alu -9 304 2 1897 74 100 41 chr1 1753091 1753232 -280440432 - AluSg SINE Alu -143 167 1 483 248 177 50 chr1 1753298 1753781 -280439883 + L1MCc LINE L1 1169 1716 -4889 2386 77 0 7 chr1 1753787 1754087 -280439577 + AluSp SINE Alu 1 298 -15 1136 120 25 0 chr1 1754087 1754245 -280439419 + AluSg/x SINE Alu 134 295 -17 601 260 116 8 chr1 1754257 1754507 -280439157 + L1MCc LINE L1 1735 2011 -4930 1709 177 21 0 chr1 1754519 1754801 -280438863 + AluJb SINE Alu 1 288 -24 383 177 76 0 chr1 1754801 1754880 -280438784 + L1MCc LINE L1 2276 2360 -4581 625 287 105 53 chr1 1754927 1755338 -280438326 - MER21B LTR ERV1 -407 456 25 9005 132 62 13 chr1 1755417 1755827 -280437837 - Tigger2 DNA MER2_type -4 2714 2326 1949 119 58 3 chr1 1755827 1756122 -280437542 - AluSq SINE Alu -2 311 1 9005 132 62 13 chr1 1756122 1757360 -280436304 - Tigger2 DNA MER2_type -392 2326 984 1116 170 22 27 chr1 1757369 1757592 -280436072 + AluJo SINE Alu 10 227 -85 189 0 0 0 chr1 1757630 1757651 -280436013 + (ATTG)n Simple_repeat Simple_repeat 2 22 0 1942 127 0 0 chr1 1757651 1757935 -280435729 - AluSx SINE Alu -28 284 1 229 196 78 0 chr1 1757940 1757991 -280435673 - L1MC4 LINE L1 -891 7151 7097 501 116 0 0 chr1 1758092 1758161 -280435503 - AluS SINE Alu -223 89 21 1777 147 6 22 chr1 1758211 1758524 -280435140 + AluJb SINE Alu 3 310 -2 238 188 171 145 chr1 1760290 1760524 -280433140 + L1MC5 LINE L1 7277 7516 -445 2333 80 0 0 chr1 1761100 1761400 -280432264 - AluY SINE Alu -11 300 1 595 305 52 17 chr1 1761660 1761909 -280431755 + MIR SINE MIR 10 261 -1 1105 200 137 46 chr1 1762110 1762223 -280431441 - L1ME LINE L1 -476 5690 5589 1464 169 6 66 chr1 1762223 1762555 -280431109 + AluJo SINE Alu 1 312 0 1105 200 137 46 chr1 1762555 1762820 -280430844 - L1ME LINE L1 -577 5589 5349 1555 155 32 48 chr1 1762820 1762992 -280430672 - AluJb SINE Alu -8 304 138 1920 141 7 0 chr1 1762992 1763283 -280430381 - AluSx SINE Alu -19 293 1 1555 155 32 48 chr1 1763283 1763419 -280430245 - AluJb SINE Alu -174 138 1 1105 200 137 46 chr1 1763419 1763688 -280429976 - L1ME LINE L1 -817 5349 5106 2329 81 0 0 chr1 1763688 1763986 -280429678 - AluY SINE Alu -13 298 1 1904 117 13 23 chr1 1763986 1764293 -280429371 - AluSc SINE Alu -5 304 1 1105 200 137 46 chr1 1764293 1764350 -280429314 - L1ME LINE L1 -1059 5107 4923 2189 98 0 0 chr1 1764355 1764651 -280429013 + AluSx SINE Alu 3 298 -14 358 177 42 21 chr1 1764696 1764792 -280428872 - L1MC4 LINE L1 0 8042 7945 2360 84 0 0 chr1 1764868 1765176 -280428488 - AluY SINE Alu -3 308 1 601 236 0 16 chr1 1765408 1765531 -280428133 + FLAM_A SINE Alu 2 122 -11 1864 137 0 23 chr1 1765997 1766296 -280427368 + AluSx SINE Alu 1 292 -20 742 110 0 0 chr1 1766307 1766407 -280427257 + AluSx SINE Alu 3 102 -210 1207 141 0 5 chr1 1766487 1766679 -280426985 + AluSx SINE Alu 111 301 -11 1950 123 0 3 chr1 1766679 1766963 -280426701 + AluSg SINE Alu 1 283 -27 207 69 0 0 chr1 1766963 1766992 -280426672 + (CA)n Simple_repeat Simple_repeat 2 30 0 1959 129 0 3 chr1 1767328 1767622 -280426042 - AluSc SINE Alu -16 293 1 1821 118 36 4 chr1 1767633 1767912 -280425752 - AluSx SINE Alu -24 288 1 1343 141 48 20 chr1 1768209 1768458 -280425206 + L1MB5 LINE L1 5570 5825 -349 909 81 89 0 chr1 1768458 1768582 -280425082 + AluSq/x SINE Alu 1 135 -178 2226 86 0 16 chr1 1768582 1768886 -280424778 + AluY SINE Alu 2 300 -11 1551 163 42 54 chr1 1768902 1769233 -280424431 + L1MB5 LINE L1 5838 6164 -10 277 226 418 0 chr1 1769381 1769527 -280424137 - MER20 DNA MER1_type -7 212 6 1578 169 0 24 chr1 1769663 1769959 -280423705 - AluJo SINE Alu -23 289 1 1693 114 23 75 chr1 1770228 1770346 -280423318 + AluSx SINE Alu 14 137 -175 2390 77 0 0 chr1 1770346 1770657 -280423007 + AluY SINE Alu 1 311 0 1693 114 23 75 chr1 1770657 1770844 -280422820 + AluSx SINE Alu 137 303 -9 2373 52 0 0 chr1 1771724 1772048 -280421616 + AluY SINE Alu 1 324 0 1111 241 130 26 chr1 1772067 1772254 -280421410 + L1MC4 LINE L1 6430 6596 -1289 438 20 0 0 chr1 1772254 1772305 -280421359 + (CA)n Simple_repeat Simple_repeat 1 51 0 1111 241 130 26 chr1 1772305 1772714 -280420950 + L1MC4 LINE L1 6596 7151 -734 1948 123 0 0 chr1 1772717 1773001 -280420663 + AluSx SINE Alu 1 284 -28 189 0 0 0 chr1 1773001 1773022 -280420642 + (CAAT)n Simple_repeat Simple_repeat 2 22 0 1048 170 22 27 chr1 1773060 1773283 -280420381 - AluJo SINE Alu -81 231 10 9557 131 62 13 chr1 1773292 1774530 -280419134 + Tigger2 DNA MER2_type 984 2326 -392 1809 119 58 3 chr1 1774530 1774825 -280418839 + AluSq SINE Alu 1 311 -2 9557 131 62 13 chr1 1774825 1775235 -280418429 + Tigger2 DNA MER2_type 2326 2714 -4 725 273 114 63 chr1 1775314 1775725 -280417939 + MER21B LTR ERV1 25 456 -407 398 177 76 0 chr1 1775772 1775851 -280417813 - L1MCc LINE L1 -4581 2360 2276 1569 177 21 0 chr1 1775851 1776133 -280417531 - AluJb SINE Alu -24 288 1 649 260 116 8 chr1 1776145 1776395 -280417269 - L1MCc LINE L1 -4930 2011 1735 1055 120 25 0 chr1 1776407 1776565 -280417099 - AluSg/x SINE Alu -17 293 132 2242 77 0 7 chr1 1776565 1776865 -280416799 - AluSp SINE Alu -15 298 1 539 242 175 48 chr1 1776871 1777354 -280416310 - L1MCc LINE L1 -4889 1534 1169 1171 57 0 0 chr1 1777420 1777561 -280416103 + AluSg1 SINE Alu 1 141 -168 1988 92 7 17 chr1 1777561 1777854 -280415810 + AluSp SINE Alu 2 291 -22 1016 148 0 0 chr1 1777968 1778123 -280415541 - FRAM SINE Alu -26 150 1 2032 120 0 3 chr1 1778135 1778427 -280415237 - AluSx SINE Alu -21 291 1 1166 170 74 48 chr1 1778457 1778727 -280414937 + AluJo SINE Alu 1 277 -35 2180 53 42 3 chr1 1778760 1779043 -280414621 + AluY SINE Alu 1 294 -17 2226 96 0 3 chr1 1779269 1779570 -280414094 + AluSq SINE Alu 1 300 -13 2045 123 7 0 chr1 1779953 1780255 -280413409 + AluSq SINE Alu 1 304 -9 309 51 0 0 chr1 1780394 1780433 -280413231 + (TG)n Simple_repeat Simple_repeat 2 40 0 550 208 57 0 chr1 1780435 1780541 -280413123 - FLAM_C SINE Alu -30 113 2 2149 102 0 0 chr1 1780976 1781269 -280412395 - AluSp SINE Alu -20 293 1 2166 120 0 0 chr1 1782873 1783173 -280410491 - AluSx SINE Alu -12 300 1 22 35 0 0 chr1 1783310 1783339 -280410325 + AT_rich Low_complexity Low_complexity 1 29 0 2249 71 0 3 chr1 1783424 1783721 -280409943 - AluY SINE Alu -11 300 5 1825 132 14 7 chr1 1784433 1784729 -280408935 + AluSx SINE Alu 1 298 -14 624 100 100 20 chr1 1784857 1784957 -280408707 - AluSg/x SINE Alu -22 288 181 823 178 92 12 chr1 1785289 1785452 -280408212 + AluJb SINE Alu 136 311 -1 2387 65 7 0 chr1 1786040 1786347 -280407317 - AluY SINE Alu -2 309 1 2090 59 3 56 chr1 1786686 1787010 -280406654 + AluY SINE Alu 1 307 -4 647 241 0 0 chr1 1787017 1787150 -280406514 + FLAM_C SINE Alu 1 133 0 308 159 55 131 chr1 1787150 1787187 -280406477 - Charlie5 DNA MER1_type -81 2543 2505 1312 162 170 4 chr1 1787187 1787446 -280406218 - AluJb SINE Alu 0 302 1 308 159 55 131 chr1 1787446 1787553 -280406111 - Charlie5 DNA MER1_type -119 2505 2410 2091 124 0 3 chr1 1788921 1789227 -280404437 - AluSx SINE Alu -7 305 1 1637 172 0 25 chr1 1789459 1789779 -280403885 + AluJb SINE Alu 1 312 0 2002 102 7 10 chr1 1789781 1790076 -280403588 + AluSx SINE Alu 1 294 -18 2318 93 0 0 chr1 1790409 1790721 -280402943 - AluSx SINE Alu 0 312 1 872 102 31 0 chr1 1790738 1790866 -280402798 - AluJo SINE Alu -176 136 5 216 0 0 0 chr1 1790972 1790996 -280402668 + (T)n Simple_repeat Simple_repeat 1 24 0 2372 226 46 20 chr1 1791789 1792373 -280401291 + L1MB5 LINE L1 5576 6174 0 2124 80 4 0 chr1 1792382 1792658 -280401006 + AluSx SINE Alu 28 304 -8 262 199 117 0 chr1 1793830 1793904 -280399760 + MIR SINE MIR 45 128 -80 2236 90 3 3 chr1 1794161 1794472 -280399192 - AluY SINE Alu 0 311 1 1555 173 20 10 chr1 1794475 1794776 -280398888 - AluJo SINE Alu 0 312 9 1084 210 110 3 chr1 1795188 1795479 -280398185 + L1MA7 LINE L1 5958 6279 -12 1457 193 0 27 chr1 1795512 1795808 -280397856 + AluJo SINE Alu 3 290 -22 25 31 0 0 chr1 1795853 1795885 -280397779 + AT_rich Low_complexity Low_complexity 1 32 0 1408 126 165 11 chr1 1795890 1796151 -280397513 + AluSx SINE Alu 1 301 -11 282 56 0 0 chr1 1796871 1796907 -280396757 + (TG)n Simple_repeat Simple_repeat 2 37 0 1171 75 43 0 chr1 1796948 1797109 -280396555 - L1PA6 LINE L1 -1 6153 5986 2381 56 0 13 chr1 1797214 1797517 -280396147 - AluY SINE Alu -12 299 1 2182 83 7 7 chr1 1797588 1797888 -280395776 - AluY SINE Alu -11 300 1 2115 121 0 7 chr1 1798392 1798697 -280394967 + AluSx SINE Alu 1 303 -9 186 43 0 0 chr1 1798697 1798720 -280394944 + (TA)n Simple_repeat Simple_repeat 1 23 0 324 175 0 0 chr1 1798734 1798791 -280394873 + Alu SINE Alu 240 296 -4 2138 125 0 0 chr1 1798812 1799117 -280394547 + AluSx SINE Alu 1 305 -7 1680 142 0 86 chr1 1799221 1799415 -280394249 - AluJo SINE Alu -7 305 149 2068 76 40 0 chr1 1799415 1799691 -280393973 + AluY SINE Alu 1 287 -24 1680 142 0 86 chr1 1799691 1799821 -280393843 - AluJo SINE Alu -163 149 9 190 310 28 42 chr1 1800115 1800186 -280393478 + L3b LINE CR1 1479 1548 -35 1445 119 169 4 chr1 1800329 1800590 -280393074 + AluSx SINE Alu 1 304 -8 2033 112 0 0 chr1 1800841 1801151 -280392513 + AluSx SINE Alu 6 315 0 2018 105 14 7 chr1 1801474 1801769 -280391895 + AluSp SINE Alu 1 297 -16 2356 71 0 7 chr1 1801771 1802081 -280391583 + AluY SINE Alu 1 308 -3 1740 136 20 33 chr1 1802286 1802587 -280391077 - AluSg SINE Alu 0 310 14 2056 141 0 0 chr1 1802783 1803088 -280390576 - AluSx SINE Alu -7 305 1 2213 92 0 3 chr1 1803938 1804232 -280389432 + AluSq SINE Alu 1 293 -20 1984 110 3 10 chr1 1804303 1804603 -280389061 - AluSq SINE Alu -15 298 1 2156 101 0 7 chr1 1804605 1804902 -280388762 - AluSx SINE Alu -17 295 1 24 0 0 0 chr1 1805449 1805473 -280388191 + AT_rich Low_complexity Low_complexity 1 24 0 2246 64 0 20 chr1 1805473 1805768 -280387896 - AluY SINE Alu -22 289 1 2160 123 0 0 chr1 1805768 1806078 -280387586 - AluSg SINE Alu 0 310 1 1236 193 64 0 chr1 1806199 1806463 -280387201 + AluJo SINE Alu 2 282 -30 417 91 0 0 chr1 1806791 1806846 -280386818 - Alu SINE Alu -253 56 2 2156 101 0 7 chr1 1806849 1807146 -280386518 - AluSx SINE Alu -17 295 1 24 0 0 0 chr1 1807693 1807717 -280385947 + AT_rich Low_complexity Low_complexity 1 24 0 2265 67 0 20 chr1 1807714 1808012 -280385652 - AluY SINE Alu -19 292 1 2272 107 0 3 chr1 1808012 1808322 -280385342 - AluSc SINE Alu 0 309 1 1903 95 64 18 chr1 1808818 1809101 -280384563 + AluSx SINE Alu 1 296 -16 1002 201 14 14 chr1 1809320 1809539 -280384125 + MER47A DNA MER2_type 28 246 -120 191 318 103 40 chr1 1809693 1809819 -280383845 + MIR SINE MIR 13 146 -116 266 248 107 58 chr1 1810509 1810630 -280383034 + L1MC/D LINE L1 5683 5809 -1999 2029 119 7 0 chr1 1810776 1811071 -280382593 - AluSx SINE Alu -15 297 1 1266 143 10 0 chr1 1812046 1812249 -280381415 - AluSq SINE Alu -22 291 87 2387 44 7 3 chr1 1812258 1812554 -280381110 - AluY SINE Alu -14 297 1 1267 282 108 50 chr1 1812940 1814100 -280379564 + L1ME LINE L1 47 1269 -4811 584 302 71 88 chr1 1814117 1814368 -280379296 + L1ME LINE L1 1401 1655 -4425 2005 122 10 7 chr1 1814368 1814662 -280379002 - AluSx SINE Alu -17 295 1 584 302 71 88 chr1 1814662 1815209 -280378455 + L1ME LINE L1 1655 2186 -3894 1150 242 129 27 chr1 1815237 1815820 -280377844 + L1ME LINE L1 2253 2894 -3186 1541 103 23 0 chr1 1815820 1816034 -280377630 + AluSx SINE Alu 1 219 -93 411 200 61 17 chr1 1816247 1816362 -280377302 - L1ME LINE L1 -4700 1561 1442 1272 281 108 51 chr1 1816379 1817540 -280376124 - L1ME LINE L1 -4811 1269 47 2083 87 10 13 chr1 1817926 1818225 -280375439 + AluSx SINE Alu 1 298 -14 1266 143 10 0 chr1 1818234 1818437 -280375227 + AluSq SINE Alu 87 291 -22 2029 119 7 0 chr1 1819412 1819707 -280373957 + AluSx SINE Alu 1 297 -15 266 248 107 58 chr1 1819853 1819974 -280373690 - L1MC/D LINE L1 -1999 5809 5683 191 318 103 40 chr1 1820664 1820790 -280372874 - MIR SINE MIR -116 146 13 1002 201 14 14 chr1 1820944 1821163 -280372501 - MER47A DNA MER2_type -120 246 28 1903 95 64 18 chr1 1821382 1821665 -280371999 - AluSx SINE Alu -16 296 1 2196 92 3 0 chr1 1822161 1822445 -280371219 + AluSc SINE Alu 1 285 -24 767 92 64 0 chr1 1822822 1822931 -280370733 - AluSq SINE Alu -101 212 97 2056 122 7 0 chr1 1824071 1824365 -280369299 - AluSq SINE Alu -17 296 1 2064 121 0 7 chr1 1824427 1824733 -280368931 - AluSc SINE Alu -5 304 1 2474 50 0 10 chr1 1825674 1825976 -280367688 + AluSp SINE Alu 1 299 -14 2220 86 3 10 chr1 1827437 1827738 -280365926 - AluSp SINE Alu -14 299 1 2025 127 3 0 chr1 1829096 1829396 -280364268 - AluSg SINE Alu -6 304 4 204 139 28 0 chr1 1831376 1831412 -280362252 + GA-rich Low_complexity Low_complexity 5 41 0 1186 98 11 6 chr1 1832409 1832583 -280361081 + AluY SINE Alu 122 296 -15 1160 124 0 0 chr1 1832620 1832789 -280360875 - AluSg/x SINE Alu -10 302 134 2261 79 7 7 chr1 1832789 1833093 -280360571 - AluSq SINE Alu -9 304 1 2122 82 14 0 chr1 1833108 1833401 -280360263 - AluY SINE Alu -14 297 1 23 0 0 0 chr1 1833879 1833902 -280359762 + AT_rich Low_complexity Low_complexity 1 23 0 389 219 42 0 chr1 1834995 1835091 -280358573 + MIR SINE MIR 60 159 -103 1998 103 11 4 chr1 1835098 1835379 -280358285 + AluSx SINE Alu 1 283 -29 201 292 14 0 chr1 1835445 1835517 -280358147 + L2 LINE L2 2892 2964 -349 213 240 135 21 chr1 1835583 1835679 -280357985 + L2 LINE L2 3167 3273 -40 259 209 121 0 chr1 1836108 1836199 -280357465 - MER69 DNA AcHobo -3 2523 2422 1297 181 59 28 chr1 1837354 1837456 -280356208 + AluJb SINE Alu 1 98 -214 225 0 0 0 chr1 1837456 1837481 -280356183 + (CA)n Simple_repeat Simple_repeat 2 26 0 1297 181 59 28 chr1 1837481 1837666 -280355998 + AluJb SINE Alu 98 297 -15 232 274 8 43 chr1 1838473 1838590 -280355074 + C-rich Low_complexity Low_complexity 6 118 0 233 217 28 38 chr1 1838705 1838811 -280354853 + (CGG)n Simple_repeat Simple_repeat 1 105 0 1469 204 0 4 chr1 1840068 1840343 -280353321 - AluJo SINE Alu -27 285 12 2302 78 3 0 chr1 1840352 1840647 -280353017 - AluSg SINE Alu -6 304 9 329 269 10 39 chr1 1841868 1841972 -280351692 - L1M LINE L1 -2443 5365 5265 2117 97 0 10 chr1 1842024 1842323 -280351341 - AluSg SINE Alu -14 296 1 307 119 25 4 chr1 1842459 1842528 -280351136 + Alu SINE Alu 1 53 -250 313 77 19 0 chr1 1842535 1842587 -280351077 + Alu SINE Alu 1 53 -249 2009 81 6 78 chr1 1842595 1842915 -280350749 + AluSp SINE Alu 1 297 -16 228 208 38 0 chr1 1842945 1842998 -280350666 + L1MC4 LINE L1 6649 6703 -1339 30 0 0 0 chr1 1843028 1843058 -280350606 + AT_rich Low_complexity Low_complexity 1 30 0 1438 204 48 0 chr1 1843114 1843383 -280350281 + AluJo SINE Alu 1 282 -30 486 0 0 0 chr1 1843418 1843472 -280350192 + (CA)n Simple_repeat Simple_repeat 1 54 0 811 153 0 0 chr1 1843556 1843680 -280349984 - FLAM_C SINE Alu -19 124 1 648 135 69 129 chr1 1843683 1843708 -280349956 - L1MD3 LINE L1 -7 7988 7963 2190 100 0 3 chr1 1843708 1844008 -280349656 + AluSq SINE Alu 1 299 -14 648 135 69 129 chr1 1844008 1844088 -280349576 - L1MD3 LINE L1 -32 7963 7880 2334 76 0 3 chr1 1844088 1844391 -280349273 - AluSp SINE Alu -11 302 1 648 135 69 129 chr1 1844391 1844570 -280349094 - L1MD3 LINE L1 -115 7880 6069 660 102 0 0 chr1 1844570 1844658 -280349006 - AluJ/FLAM SINE Alu -224 88 1 1694 191 3 3 chr1 1844685 1844988 -280348676 + AluJb SINE Alu 1 303 -9 2282 221 56 121 chr1 1845024 1845040 -280348624 - L1M4 LINE L1 -1078 5068 5053 1906 147 3 7 chr1 1845040 1845346 -280348318 + AluJb SINE Alu 1 305 -7 2282 221 56 121 chr1 1845346 1846092 -280347572 - L1M4 LINE L1 -1093 5053 4260 1842 128 38 7 chr1 1846092 1846382 -280347282 - AluSq SINE Alu -14 299 1 1690 84 0 0 chr1 1846390 1846629 -280347035 - AluY SINE Alu 0 308 70 2282 221 56 121 chr1 1846629 1846925 -280346739 - L1M4 LINE L1 -1893 4253 4068 1074 141 5 40 chr1 1846945 1847144 -280346520 - AluSg/x SINE Alu 0 310 119 315 0 0 0 chr1 1847144 1847179 -280346485 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 1114 143 6 6 chr1 1847179 1847354 -280346310 - AluSx SINE Alu -137 175 1 2020 139 10 0 chr1 1847391 1847570 -280346094 - AluSx SINE Alu 0 312 127 2159 102 0 13 chr1 1847570 1847884 -280345780 - AluSx SINE Alu -2 310 1 2020 139 10 0 chr1 1847884 1848013 -280345651 - AluSx SINE Alu -185 127 1 500 296 31 6 chr1 1848060 1848222 -280345442 - MER5B DNA MER1_type -9 169 4 849 231 44 108 chr1 1848331 1848582 -280345082 - MLT1B LTR MaLR 0 626 361 1367 180 19 64 chr1 1848582 1848893 -280344771 - AluJo SINE Alu -15 297 1 849 231 44 108 chr1 1848893 1848954 -280344710 - MLT1B LTR MaLR -265 361 298 2236 93 7 0 chr1 1848954 1849254 -280344410 - AluSq SINE Alu -7 306 5 849 231 44 108 chr1 1849254 1849334 -280344330 - MLT1B LTR MaLR -328 298 20 851 167 0 0 chr1 1849336 1849468 -280344196 + FLAM_C SINE Alu 2 133 0 2110 111 0 7 chr1 1849932 1850229 -280343435 + AluSx SINE Alu 1 295 -17 1086 168 0 25 chr1 1850239 1850436 -280343228 + AluJo SINE Alu 1 192 -120 189 171 0 0 chr1 1850445 1850480 -280343184 + A-rich Low_complexity Low_complexity 1 35 0 1928 76 4 19 chr1 1850708 1850971 -280342693 - AluSp SINE Alu 0 313 55 821 154 56 7 chr1 1851019 1851162 -280342502 - AluJb SINE Alu -161 151 2 1925 116 25 18 chr1 1851234 1851519 -280342145 - AluSq SINE Alu -26 287 1 29 47 0 0 chr1 1851658 1851701 -280341963 + AT_rich Low_complexity Low_complexity 1 43 0 2173 90 3 0 chr1 1852240 1852529 -280341135 - AluSx SINE Alu -22 290 1 2365 90 0 0 chr1 1853502 1853812 -280339852 - AluSx SINE Alu -2 310 1 1042 60 8 8 chr1 1853812 1853946 -280339718 - AluY SINE Alu -177 134 1 321 26 0 0 chr1 1854351 1854389 -280339275 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 1889 136 0 3 chr1 1854389 1854675 -280338989 - AluSq SINE Alu -28 285 1 1522 181 14 10 chr1 1855723 1855858 -280337806 + AluJb SINE Alu 1 134 -178 2106 105 0 3 chr1 1855858 1856153 -280337511 + AluSg1 SINE Alu 1 294 -15 1522 181 14 10 chr1 1856153 1856309 -280337355 + AluJb SINE Alu 134 293 -19 410 264 86 0 chr1 1860121 1860261 -280333403 - MSTD LTR MaLR 0 396 245 324 296 50 0 chr1 1860298 1860440 -280333224 - MSTC LTR MaLR -243 153 6 2304 75 3 3 chr1 1862030 1862325 -280331339 + AluSc SINE Alu 1 295 -14 252 0 0 0 chr1 1864212 1864240 -280329424 + (GGA)n Simple_repeat Simple_repeat 2 29 0 203 188 21 0 chr1 1867478 1867526 -280326138 + (CA)n Simple_repeat Simple_repeat 2 50 0 218 132 19 0 chr1 1867564 1867617 -280326047 + (CA)n Simple_repeat Simple_repeat 1 54 0 358 314 128 16 chr1 1868565 1868753 -280324911 + L1ME LINE L1 5265 5473 -648 554 216 204 55 chr1 1868757 1869012 -280324652 + AluJo SINE Alu 5 297 -5 2229 84 0 7 chr1 1869060 1869356 -280324308 + AluY SINE Alu 1 294 -17 2126 105 0 10 chr1 1869356 1869651 -280324013 + AluSg SINE Alu 1 292 -18 2201 77 10 16 chr1 1869879 1870189 -280323475 - AluSg SINE Alu -2 308 1 26 0 0 0 chr1 1870424 1870450 -280323214 + GC_rich Low_complexity Low_complexity 1 26 0 180 0 0 0 chr1 1870953 1870973 -280322691 + (A)n Simple_repeat Simple_repeat 1 20 0 200 136 0 68 chr1 1871704 1871763 -280321901 + (CAAAA)n Simple_repeat Simple_repeat 2 56 0 862 270 79 41 chr1 1872515 1872934 -280320730 + MLT1F1 LTR MaLR 125 559 -8 718 126 0 0 chr1 1872986 1873089 -280320575 + AluSp/q SINE Alu 193 295 -18 503 219 164 0 chr1 1873090 1873111 -280320553 - L1M4 LINE L1 -786 5360 5344 2261 92 13 0 chr1 1873111 1873417 -280320247 - AluSx SINE Alu -2 310 1 503 219 164 0 chr1 1873417 1873541 -280320123 - L1M4 LINE L1 -802 5344 5191 216 158 0 0 chr1 1873545 1873583 -280320081 + (TATATG)n Simple_repeat Simple_repeat 3 40 0 2134 110 3 0 chr1 1873583 1873874 -280319790 - AluSp SINE Alu -9 304 13 2172 122 0 0 chr1 1873883 1874177 -280319487 - AluSx SINE Alu -18 294 1 185 277 0 0 chr1 1874370 1874417 -280319247 + MIR SINE MIR 40 86 -176 1873 133 34 0 chr1 1874695 1874988 -280318676 - AluSx SINE Alu -9 303 1 2269 82 0 22 chr1 1875000 1875317 -280318347 - AluY SINE Alu -1 310 1 2001 118 17 0 chr1 1875594 1875882 -280317782 - AluSg SINE Alu -17 293 1 186 43 0 0 chr1 1875887 1875910 -280317754 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 288 272 22 11 chr1 1875934 1876026 -280317638 - L1MC4a LINE L1 -1280 6528 6436 1151 103 23 23 chr1 1876050 1876066 -280317598 + AluSg/x SINE Alu 121 136 -176 2033 118 10 3 chr1 1876066 1876371 -280317293 + AluSp SINE Alu 1 307 -6 1151 103 23 23 chr1 1876371 1876528 -280317136 + AluSg/x SINE Alu 135 294 -18 2193 85 0 3 chr1 1876528 1876823 -280316841 + AluY SINE Alu 1 294 -17 2247 103 0 0 chr1 1877043 1877345 -280316319 - AluSx SINE Alu -10 302 1 1254 149 0 0 chr1 1879646 1879841 -280313823 - AluJb SINE Alu 0 312 118 2069 121 6 6 chr1 1880317 1880630 -280313034 - AluSq SINE Alu 0 313 1 2327 79 0 3 chr1 1880630 1880933 -280312731 - AluY SINE Alu -9 302 1 2123 113 0 0 chr1 1880934 1881225 -280312439 - AluSg SINE Alu -19 291 1 868 157 0 7 chr1 1881378 1881525 -280312139 - AluJo SINE Alu -166 146 1 304 323 8 40 chr1 1881634 1881758 -280311906 + L1ME LINE L1 6 125 -5945 1324 136 5 0 chr1 1881806 1882004 -280311660 - AluSq SINE Alu -35 278 80 301 125 54 11 chr1 1882012 1882102 -280311562 - L1P5 LINE L1 -710 5441 5346 2129 125 3 0 chr1 1882634 1882945 -280310719 + AluSq SINE Alu 1 312 -1 494 312 24 0 chr1 1883081 1883251 -280310413 + MER3 DNA MER1_type 22 195 -14 2397 64 0 10 chr1 1883339 1883651 -280310013 - AluY SINE Alu -2 309 1 2143 101 0 3 chr1 1883657 1883953 -280309711 - AluSx SINE Alu -17 295 1 1613 147 8 4 chr1 1883993 1884258 -280309406 + AluSx SINE Alu 42 307 -5 1631 159 3 75 chr1 1884892 1885212 -280308452 - AluSx SINE Alu -15 297 1 2244 96 3 0 chr1 1885215 1885518 -280308146 - AluSx SINE Alu 0 312 9 2080 120 0 13 chr1 1885745 1886053 -280307611 - AluY SINE Alu -7 304 1 234 119 24 0 chr1 1886053 1886095 -280307569 - Alu SINE Alu -257 44 2 * 300 127 16 16 chr1 1886095 1886140 -280307524 - AluJ/FLAM SINE Alu -257 45 1 229 183 33 0 chr1 1886154 1886214 -280307450 - AluJ/FLAM SINE Alu -240 62 1 1483 170 50 14 chr1 1887045 1887327 -280306337 - AluJo SINE Alu -17 295 4 2072 125 0 0 chr1 1887470 1887759 -280305905 + AluSg SINE Alu 1 289 -21 311 284 50 14 chr1 1889869 1890010 -280303654 - MER65B LTR ERV1 -385 146 1 2007 132 10 0 chr1 1890035 1890330 -280303334 + AluSx SINE Alu 1 298 -14 1894 133 0 7 chr1 1890330 1890616 -280303048 + AluY SINE Alu 6 289 -22 1764 84 54 64 chr1 1890617 1890915 -280302749 + AluY SINE Alu 1 295 -16 2278 67 0 26 chr1 1890916 1891228 -280302436 + AluY SINE Alu 1 304 -7 2134 74 0 65 chr1 1891285 1891610 -280302054 + AluY SINE Alu 1 304 -7 2133 117 10 0 chr1 1891990 1892299 -280301365 + AluSx SINE Alu 1 312 0 357 332 109 10 chr1 1893273 1893475 -280300189 - MIR SINE MIR -21 241 20 658 164 94 0 chr1 1893478 1893606 -280300058 - FAM SINE Alu -45 140 1 1736 98 55 4 chr1 1893630 1893884 -280299780 - AluSg SINE Alu 0 310 44 1677 171 7 20 chr1 1893894 1894198 -280299466 - AluJb SINE Alu -11 301 2 519 147 198 0 chr1 1894907 1895023 -280298641 + Tigger1 DNA MER2_type 1 139 -2279 286 70 0 0 chr1 1895027 1895070 -280298594 - AluY SINE Alu -5 303 261 1516 110 0 5 chr1 1895071 1895280 -280298384 - AluY SINE Alu -103 208 1 213 309 12 48 chr1 1895434 1895518 -280298146 - L2 LINE L2 -2760 554 474 1218 131 159 36 chr1 1895938 1896190 -280297474 - AluY SINE Alu -17 294 12 1219 168 0 0 chr1 1896256 1896452 -280297212 + AluSg/x SINE Alu 100 295 -17 2141 102 0 17 chr1 1896454 1896748 -280296916 + AluSg SINE Alu 3 291 -19 2149 76 0 17 chr1 1896752 1897080 -280296584 + AluY SINE Alu 1 323 0 2287 80 3 3 chr1 1897234 1897535 -280296129 + AluY SINE Alu 1 301 -10 2396 60 0 7 chr1 1898213 1898513 -280295151 + AluY SINE Alu 1 298 -13 905 126 0 15 chr1 1900093 1900228 -280293436 + AluJo SINE Alu 1 133 -169 2459 70 0 3 chr1 1900304 1900617 -280293047 - AluSx SINE Alu 0 312 1 856 194 26 0 chr1 1901060 1901215 -280292449 + AluJo SINE Alu 137 295 -7 317 181 169 0 chr1 1901875 1901958 -280291706 + FLAM_A SINE Alu 33 129 -4 296 261 70 14 chr1 1902648 1902790 -280290874 + L1M4b LINE L1 779 928 -5356 * 1434 281 108 9 chr1 1902787 1903513 -280290151 + L1M4b LINE L1 1140 2035 -4347 302 286 181 4 chr1 1903593 1903852 -280289812 + L1M4b LINE L1 2173 2515 -3905 344 285 47 17 chr1 1903924 1903942 -280289722 + L1M4b LINE L1 2603 2619 -3763 1578 137 0 0 chr1 1903942 1904176 -280289488 + AluSg/x SINE Alu 78 311 -1 344 285 47 17 chr1 1904176 1904329 -280289335 + L1M4b LINE L1 2619 2779 -3603 2152 92 0 13 chr1 1904333 1904647 -280289017 + AluSg SINE Alu 1 310 0 2012 117 0 10 chr1 1905002 1905302 -280288362 - AluY SINE Alu -14 297 1 1065 189 4 25 chr1 1905302 1905546 -280288118 - L1M4c LINE L1 -4542 1842 1604 1409 152 28 24 chr1 1905547 1905797 -280287867 - AluJo SINE Alu -12 300 50 4167 199 130 29 chr1 1905798 1907246 -280286418 - L1M4c LINE L1 -4774 1610 17 448 141 10 10 chr1 1908216 1908315 -280285349 + GA-rich Low_complexity Low_complexity 2 100 0 2346 86 0 0 chr1 1908488 1908790 -280284874 - AluSx SINE Alu -10 302 1 1746 148 7 30 chr1 1910591 1910776 -280282888 - AluJo SINE Alu -21 291 114 2295 77 3 10 chr1 1910776 1911076 -280282588 + AluSg SINE Alu 1 298 -12 1746 148 7 30 chr1 1911076 1911188 -280282476 - AluJo SINE Alu -198 114 1 35 24 0 0 chr1 1916825 1916867 -280276797 + GC_rich Low_complexity Low_complexity 1 42 0 27 29 0 0 chr1 1917029 1917063 -280276601 + GC_rich Low_complexity Low_complexity 1 34 0 376 224 24 8 chr1 1920101 1920226 -280273438 + (CA)n Simple_repeat Simple_repeat 2 128 0 236 127 18 0 chr1 1920266 1920321 -280273343 + (CA)n Simple_repeat Simple_repeat 1 56 0 346 325 101 34 chr1 1920698 1920984 -280272680 + L1ME LINE L1 757 5407 -648 357 146 0 0 chr1 1920988 1921060 -280272604 + AluJ/FLAM SINE Alu 5 59 -243 547 172 82 16 chr1 1921121 1921243 -280272421 + FLAM_A SINE Alu 1 130 -3 2229 84 0 7 chr1 1921291 1921587 -280272077 + AluY SINE Alu 1 294 -17 2145 99 0 10 chr1 1921587 1921880 -280271784 + AluSg SINE Alu 1 290 -20 2278 87 6 13 chr1 1922113 1922424 -280271240 - AluSc SINE Alu 0 309 1 1015 166 6 6 chr1 1922441 1922604 -280271060 - FRAM SINE Alu 0 166 4 1875 114 0 28 chr1 1922832 1923145 -280270519 - AluSx SINE Alu 0 305 1 2151 80 3 17 chr1 1923153 1923455 -280270209 - AluSg SINE Alu -12 298 1 26 0 0 0 chr1 1923690 1923716 -280269948 + GC_rich Low_complexity Low_complexity 1 26 0 200 136 0 68 chr1 1924979 1925038 -280268626 + (CAAAA)n Simple_repeat Simple_repeat 2 56 0 851 272 79 41 chr1 1925790 1926209 -280267455 + MLT1F1 LTR MaLR 125 559 -8 718 126 0 0 chr1 1926261 1926364 -280267300 + AluSp/q SINE Alu 193 295 -18 2239 95 13 0 chr1 1926386 1926692 -280266972 - AluSx SINE Alu -2 310 1 280 232 50 144 chr1 1926694 1926840 -280266824 - L1M4 LINE L1 -822 5324 5166 2131 108 7 0 chr1 1926840 1927137 -280266527 - AluSp SINE Alu -2 311 13 2251 107 0 0 chr1 1927146 1927444 -280266220 - AluSx SINE Alu -14 298 1 280 232 50 144 chr1 1927444 1927627 -280266037 - L1M4 LINE L1 -988 5158 5017 257 337 232 6 chr1 1927637 1927818 -280265846 + MIR SINE MIR 40 261 -1 2022 118 7 3 chr1 1927962 1928259 -280265405 - AluY SINE Alu -13 298 1 280 269 57 80 chr1 1928462 1928533 -280265131 - L1MC4a LINE L1 -571 7237 7166 1920 132 17 0 chr1 1928533 1928821 -280264843 - AluSg SINE Alu -17 293 1 280 269 57 80 chr1 1928821 1928924 -280264740 - L1MC4a LINE L1 -642 7166 7067 1946 146 10 0 chr1 1929033 1929154 -280264510 + AluSx SINE Alu 9 127 -185 2191 102 0 13 chr1 1929154 1929468 -280264196 + AluSx SINE Alu 1 310 -2 1946 146 10 0 chr1 1929468 1929647 -280264017 + AluSx SINE Alu 127 312 0 1135 143 6 6 chr1 1929684 1929859 -280263805 + AluSx SINE Alu 1 175 -137 315 0 0 0 chr1 1929859 1929894 -280263770 + (CAAAAA)n Simple_repeat Simple_repeat 3 37 0 1088 141 5 40 chr1 1929894 1930093 -280263571 + AluSg/x SINE Alu 121 312 0 2077 230 56 112 chr1 1930113 1930409 -280263255 + L1M4 LINE L1 4068 4379 -1767 1708 84 0 0 chr1 1930409 1930648 -280263016 + AluY SINE Alu 70 308 0 1867 128 38 7 chr1 1930656 1930946 -280262718 + AluSq SINE Alu 1 299 -14 2077 230 56 112 chr1 1930946 1931692 -280261972 + L1M4 LINE L1 4386 5172 -974 1939 147 3 7 chr1 1931692 1931998 -280261666 - AluJb SINE Alu -7 305 1 2077 230 56 112 chr1 1931998 1932050 -280261614 + L1M4 LINE L1 5172 5107 -1039 1735 191 3 3 chr1 1932050 1932353 -280261311 - AluJb SINE Alu -9 303 1 2077 230 56 112 chr1 1932353 1932377 -280261287 + L1M4 LINE L1 5106 5130 -1016 666 102 0 0 chr1 1932380 1932468 -280261196 + AluJ/FLAM SINE Alu 1 88 -224 532 145 81 128 chr1 1932468 1932647 -280261017 + L1MD3 LINE L1 6069 6255 -1711 2356 76 0 3 chr1 1932647 1932950 -280260714 + AluSp SINE Alu 1 302 -11 532 145 81 128 chr1 1932950 1933030 -280260634 + L1MD3 LINE L1 6255 6337 -1629 2232 97 0 3 chr1 1933030 1933330 -280260334 - AluSq SINE Alu -14 299 1 532 145 81 128 chr1 1933330 1933366 -280260298 + L1MD3 LINE L1 6337 7959 -7 2089 121 0 7 chr1 1933392 1933698 -280259966 - AluSc SINE Alu -5 304 1 2491 50 0 10 chr1 1934639 1934941 -280258723 + AluSp SINE Alu 1 299 -14 2244 86 3 10 chr1 1936402 1936703 -280256961 - AluSp SINE Alu -14 299 1 2054 127 3 0 chr1 1938061 1938361 -280255303 - AluSg SINE Alu -6 304 4 204 139 28 0 chr1 1940341 1940377 -280253287 + GA-rich Low_complexity Low_complexity 5 41 0 1100 105 12 6 chr1 1941374 1941536 -280252128 + AluY SINE Alu 122 284 -27 1283 156 4 39 chr1 2041548 2041779 -280151885 - AluSx SINE Alu -87 225 3 1925 50 0 114 chr1 2042399 2042698 -280150966 - AluY SINE Alu -46 265 1 195 42 0 0 chr1 2043346 2043370 -280150294 + (CGTG)n Simple_repeat Simple_repeat 4 27 0 1952 104 0 38 chr1 2043897 2044186 -280149478 - AluSx SINE Alu -34 278 1 2071 120 0 23 chr1 2044197 2044505 -280149159 - AluSg1 SINE Alu -8 301 1 2237 98 3 0 chr1 2046375 2046672 -280146992 + AluSg SINE Alu 1 298 -12 216 292 104 42 chr1 2046792 2046888 -280146776 + MIR SINE MIR 156 257 -5 647 221 8 0 chr1 2046920 2047051 -280146613 - FLAM_C SINE Alu 0 133 2 945 201 183 0 chr1 2047330 2047559 -280146105 + AluJo SINE Alu 18 288 -24 1522 176 19 4 chr1 2047605 2047733 -280145931 + AluSq SINE Alu 1 126 -187 1917 128 17 3 chr1 2047733 2048030 -280145634 + AluSp SINE Alu 2 302 -11 1522 176 19 4 chr1 2048030 2048163 -280145501 + AluSq SINE Alu 126 266 -47 352 272 24 16 chr1 2048292 2048417 -280145247 - L1MB8 LINE L1 -12 6166 6041 690 238 18 24 chr1 2049368 2049536 -280144128 - AluJb SINE Alu -9 303 137 2011 103 34 0 chr1 2049536 2049828 -280143836 - AluSx SINE Alu -10 302 1 1886 142 0 14 chr1 2049950 2050245 -280143419 - AluSx SINE Alu -21 291 1 2155 106 0 0 chr1 2050313 2050626 -280143038 - AluSx SINE Alu 0 313 1 1930 89 0 124 chr1 2051201 2051401 -280142263 - AluSq SINE Alu -7 296 153 1569 88 0 5 chr1 2051401 2051606 -280142058 - AluY SINE Alu -107 204 1 1930 89 0 124 chr1 2051606 2051743 -280141921 - AluSq SINE Alu -150 153 1 1461 198 21 3 chr1 2051753 2052041 -280141623 - AluJo SINE Alu -19 293 1 2243 70 0 54 chr1 2053948 2054263 -280139401 - AluY SINE Alu -13 298 1 681 130 10 0 chr1 2054263 2054363 -280139301 - AluY SINE Alu -167 144 44 22 35 0 0 chr1 2054410 2054439 -280139225 + AT_rich Low_complexity Low_complexity 1 29 0 2137 110 7 0 chr1 2054717 2055018 -280138646 - AluSx SINE Alu -9 303 1 1203 151 39 131 chr1 2057565 2057765 -280135899 - AluYb8 SINE Alu -12 306 148 2283 87 3 3 chr1 2057765 2058064 -280135600 - AluY SINE Alu -12 299 1 1203 151 39 131 chr1 2058064 2058200 -280135464 - AluYb8 SINE Alu -170 148 1 2299 84 7 0 chr1 2058208 2058517 -280135147 - AluY SINE Alu 0 311 1 434 174 0 0 chr1 2058689 2058758 -280134906 - FLAM_A SINE Alu -56 76 8 2053 110 10 3 chr1 2059180 2059480 -280134184 - AluSg SINE Alu -8 302 1 1165 96 12 0 chr1 2060705 2060871 -280132793 - AluSq SINE Alu -9 304 137 2017 115 0 55 chr1 2060872 2061202 -280132462 - AluSx SINE Alu 0 312 1 266 136 0 0 chr1 2061202 2061246 -280132418 - Alu SINE Alu -264 44 1 1797 98 132 0 chr1 2061963 2062229 -280131435 - AluY SINE Alu 0 301 1 2327 80 3 0 chr1 2063121 2063421 -280130243 - AluSx SINE Alu -11 301 1 448 132 44 0 chr1 2066339 2066430 -280127234 + FRAM SINE Alu 30 124 -52 1981 128 10 14 chr1 2067188 2067348 -280126316 - AluSx SINE Alu -16 296 136 2491 50 0 3 chr1 2067348 2067650 -280126014 - AluY SINE Alu -10 301 1 1981 128 10 14 chr1 2067650 2067786 -280125878 - AluSx SINE Alu -176 136 1 1921 125 4 0 chr1 2067949 2068266 -280125398 - AluSx SINE Alu 0 326 9 2299 86 20 0 chr1 2068300 2068602 -280125062 - AluY SINE Alu -2 309 2 2205 92 3 3 chr1 2068603 2068907 -280124757 - AluSx SINE Alu -8 304 1 623 101 0 0 chr1 2068907 2069006 -280124658 - HERV17 LTR ERV1 -5187 1709 1611 * 1302 158 3 81 chr1 2068973 2069038 -280124626 - HERV17 LTR ERV1 -3313 4472 4404 2557 50 0 0 chr1 2069038 2069339 -280124325 + AluY SINE Alu 1 301 -10 1302 158 3 81 chr1 2069339 2069473 -280124191 - HERV17 LTR ERV1 -3381 4404 4303 1998 113 0 53 chr1 2069473 2069793 -280123871 - AluSx SINE Alu -9 303 1 1302 158 3 81 chr1 2069793 2069902 -280123762 - HERV17 LTR ERV1 -3482 4303 4187 1883 121 24 17 chr1 2069973 2070271 -280123393 - AluY SINE Alu -10 301 2 578 140 26 88 chr1 2070272 2070612 -280123052 - HERV17 LTR ERV1 -5760 1136 704 * 1380 186 69 9 chr1 2070599 2070933 -280122731 - HERV17 LTR ERV1 -4918 1731 1378 2329 58 17 0 chr1 2071248 2071542 -280122122 + AluY SINE Alu 2 300 -11 2160 82 21 7 chr1 2072245 2072536 -280121128 - AluY SINE Alu -16 295 1 2084 122 3 3 chr1 2072544 2072847 -280120817 - AluSx SINE Alu -9 303 1 205 175 0 0 chr1 2073046 2073086 -280120578 + (CCCCAA)n Simple_repeat Simple_repeat 1 40 0 22 0 0 0 chr1 2074092 2074114 -280119550 + GC_rich Low_complexity Low_complexity 1 22 0 233 271 160 7 chr1 2074728 2074872 -280118792 + L2 LINE L2 2286 2451 -863 312 280 69 42 chr1 2076718 2076900 -280116764 + MIR SINE MIR 15 202 -60 2285 49 3 14 chr1 2077717 2078005 -280115659 - AluY SINE Alu -26 285 1 291 146 0 0 chr1 2078016 2078071 -280115593 + (TA)n Simple_repeat Simple_repeat 1 55 0 522 90 0 108 chr1 2078071 2078108 -280115556 + Harlequin LTR ERV1 1611 1650 -5246 2437 44 0 7 chr1 2078108 2078406 -280115258 - AluY SINE Alu -15 296 1 522 90 0 108 chr1 2078406 2078479 -280115185 + Harlequin LTR ERV1 1650 1709 -5187 2107 102 3 13 chr1 2078479 2078783 -280114881 + AluSx SINE Alu 1 301 -11 2277 91 3 3 chr1 2078783 2079092 -280114572 + AluSx SINE Alu 1 309 -3 1703 108 13 0 chr1 2079145 2079377 -280114287 + AluSg SINE Alu 1 235 -75 180 0 0 0 chr1 2079377 2079397 -280114267 + (A)n Simple_repeat Simple_repeat 1 20 0 2536 62 0 0 chr1 2079406 2079714 -280113950 + AluY SINE Alu 1 308 -3 968 118 51 0 chr1 2079716 2079893 -280113771 + LTR10A LTR ERV1 376 609 0 506 81 0 40 chr1 2079893 2079967 -280113697 + Alu SINE Alu 222 292 -19 905 78 0 8 chr1 2079969 2080097 -280113567 + FLAM_C SINE Alu 1 127 -16 1525 179 26 23 chr1 2080189 2080357 -280113307 - AluSx SINE Alu -3 309 138 2099 111 3 3 chr1 2080357 2080654 -280113010 - AluSq SINE Alu -14 299 3 1525 179 26 23 chr1 2080654 2080793 -280112871 - AluSx SINE Alu -174 138 1 1963 111 28 7 chr1 2080803 2081092 -280112572 - AluSg SINE Alu -15 295 1 1206 163 80 73 chr1 2081168 2081468 -280112196 + AluJo SINE Alu 1 302 -10 250 203 47 31 chr1 2084437 2084501 -280109163 + L1MC3 LINE L1 7496 7560 -225 252 219 16 16 chr1 2084564 2084628 -280109036 + L1MC3 LINE L1 7709 7772 -13 * 1498 230 72 0 chr1 2084627 2085045 -280108619 + L1 LINE L1 3508 3955 -2191 934 92 0 0 chr1 2085060 2085180 -280108484 + AluSq/x SINE Alu 1 120 -193 849 226 76 4 chr1 2085240 2085515 -280108149 + L1 LINE L1 3949 4243 -1903 1811 133 10 43 chr1 2085558 2085715 -280107949 - AluSx SINE Alu -20 292 148 2200 102 0 3 chr1 2085715 2086019 -280107645 - AluSg SINE Alu -7 303 1 1811 133 10 43 chr1 2086019 2086163 -280107501 - AluSx SINE Alu -164 148 1 1856 147 10 0 chr1 2086167 2086466 -280107198 - AluSx SINE Alu -4 308 7 1647 190 0 0 chr1 2086486 2086765 -280106899 - AluJb SINE Alu -25 287 9 269 196 18 0 chr1 2086863 2086919 -280106745 + MLT1I LTR MaLR 353 409 0 1952 132 10 0 chr1 2087134 2087423 -280106241 - AluSc SINE Alu -17 292 1 1286 121 15 5 chr1 2089615 2089813 -280103851 + AluSq SINE Alu 1 200 -113 22 35 0 0 chr1 2089813 2089842 -280103822 + AT_rich Low_complexity Low_complexity 1 29 0 965 183 106 84 chr1 2089853 2089908 -280103756 + AluJb SINE Alu 14 66 -246 2076 114 0 0 chr1 2089908 2090198 -280103466 - AluSg SINE Alu -20 290 1 965 183 106 84 chr1 2090198 2090415 -280103249 + AluJb SINE Alu 66 292 -20 1687 143 4 8 chr1 2090421 2090679 -280102985 + AluSq SINE Alu 1 257 -56 2269 75 7 0 chr1 2091172 2091467 -280102197 - AluY SINE Alu -13 298 2 835 116 16 16 chr1 2094063 2094192 -280099472 + AluSp SINE Alu 13 141 -172 1961 112 10 17 chr1 2094196 2094492 -280099172 + AluY SINE Alu 1 294 -17 1747 122 3 91 chr1 2094867 2095187 -280098477 - AluSx SINE Alu -20 292 1 1417 152 24 110 chr1 2095187 2095521 -280098143 - AluSp SINE Alu -7 306 1 819 115 23 8 chr1 2095535 2095665 -280097999 - AluY SINE Alu -179 132 1 1201 171 15 0 chr1 2095666 2095871 -280097793 - AluJb SINE Alu -20 292 85 2057 114 0 10 chr1 2097203 2097500 -280096164 + AluSg SINE Alu 1 294 -16 300 319 5 32 chr1 2098444 2098629 -280095035 + (TG)n Simple_repeat Simple_repeat 1 180 0 283 300 10 3 chr1 2098650 2098970 -280094694 + (TG)n Simple_repeat Simple_repeat 1 322 0 451 274 12 6 chr1 2099001 2099169 -280094495 + (TG)n Simple_repeat Simple_repeat 2 170 0 228 387 0 12 chr1 2099140 2099308 -280094356 + (CGTG)n Simple_repeat Simple_repeat 1 166 0 * 428 320 6 6 chr1 2099245 2099423 -280094241 + (TG)n Simple_repeat Simple_repeat 2 179 0 1834 144 17 0 chr1 2100380 2100671 -280092993 + AluSx SINE Alu 1 296 -16 2076 79 18 0 chr1 2100673 2100999 -280092665 + AluSp SINE Alu 1 331 0 935 167 61 5 chr1 2101453 2101651 -280092013 + AluSg/x SINE Alu 85 293 -17 1346 149 0 0 chr1 2101654 2101862 -280091802 + AluSg/x SINE Alu 85 292 -20 2173 86 7 0 chr1 2101869 2102161 -280091503 + AluY SINE Alu 1 294 -17 1925 130 3 7 chr1 2103876 2104176 -280089488 + AluSx SINE Alu 1 299 -13 2347 65 13 0 chr1 2104187 2104494 -280089170 + AluY SINE Alu 1 311 0 516 231 0 0 chr1 2104512 2104620 -280089044 + FLAM_A SINE Alu 20 127 -15 1844 148 0 0 chr1 2104883 2105173 -280088491 + AluSc SINE Alu 1 290 -19 1108 39 0 0 chr1 2105181 2105308 -280088356 + AluY SINE Alu 9 135 -176 1850 50 50 0 chr1 2105308 2105546 -280088118 + AluY SINE Alu 60 309 -2 1831 110 41 10 chr1 2105556 2105848 -280087816 + AluSg SINE Alu 3 303 -7 189 0 0 0 chr1 2106558 2106579 -280087085 + (CCCCG)n Simple_repeat Simple_repeat 2 22 0 25 35 0 52 chr1 2106692 2106750 -280086914 + GC_rich Low_complexity Low_complexity 1 55 0 2629 152 79 0 chr1 2107656 2108163 -280085501 + LTR10A LTR ERV1 1 547 -62 481 128 23 35 chr1 2108177 2108263 -280085401 + Alu SINE Alu 221 305 -5 1976 118 30 3 chr1 2108267 2108571 -280085093 + AluSx SINE Alu 1 312 0 856 93 0 16 chr1 2108581 2108710 -280084954 + FLAM_C SINE Alu 1 127 -16 853 171 12 24 chr1 2108791 2108955 -280084709 - AluSg/x SINE Alu -11 301 140 1842 128 23 20 chr1 2108955 2109259 -280084405 - AluSq SINE Alu -8 305 1 237 197 49 33 chr1 2111059 2111120 -280082544 + L1MC3 LINE L1 7496 7557 -228 262 219 31 16 chr1 2111186 2111250 -280082414 + L1MC3 LINE L1 7709 7773 -12 2858 219 49 46 chr1 2111251 2111974 -280081690 + L1 LINE L1 3510 4229 -1917 557 75 0 50 chr1 2111974 2112054 -280081610 + Alu SINE Alu 2 77 -234 2398 82 0 0 chr1 2111985 2112288 -280081376 + AluY SINE Alu 9 311 0 2858 219 49 46 chr1 2112054 2112497 -280081167 + L1 LINE L1 4229 4456 -1690 708 254 55 0 chr1 2112497 2112662 -280081002 + FRAM SINE Alu 1 167 -9 296 235 52 17 chr1 2112686 2112801 -280080863 + L1 LINE L1 4566 4684 -1462 1907 140 0 7 chr1 2112814 2113106 -280080558 - AluSx SINE Alu -15 297 8 8224 51 20 5 chr1 2113106 2114098 -280079566 + LTR13 LTR ERVK 1 1007 0 198 0 0 0 chr1 2114113 2114135 -280079529 + (CA)n Simple_repeat Simple_repeat 1 22 0 2286 88 3 3 chr1 2114389 2114696 -280078968 - AluSp SINE Alu -6 307 1 2029 135 6 3 chr1 2114778 2115082 -280078582 + AluSx SINE Alu 1 308 -4 243 0 0 0 chr1 2115082 2115109 -280078555 + (CAATG)n Simple_repeat Simple_repeat 2 28 0 2341 73 3 3 chr1 2115818 2116121 -280077543 - AluY SINE Alu -8 303 1 579 131 0 0 chr1 2116153 2116252 -280077412 + Harlequin LTR ERV1 1611 1709 -5187 2120 115 3 3 chr1 2116252 2116556 -280077108 + AluSx SINE Alu 1 304 -8 2386 65 20 0 chr1 2116556 2116850 -280076814 + AluY SINE Alu 1 300 -11 1016 115 48 0 chr1 2116850 2117037 -280076627 + LTR10A LTR ERV1 366 609 0 484 95 0 40 chr1 2117037 2117111 -280076553 + Alu SINE Alu 221 291 -19 894 78 0 8 chr1 2117113 2117241 -280076423 + FLAM_C SINE Alu 1 127 -16 1544 175 26 23 chr1 2117333 2117501 -280076163 - AluSx SINE Alu -3 309 138 2130 104 3 3 chr1 2117501 2117798 -280075866 - AluSq SINE Alu -14 299 3 1544 175 26 23 chr1 2117798 2117937 -280075727 - AluSx SINE Alu -174 138 1 1949 119 27 7 chr1 2117946 2118240 -280075424 - AluSg SINE Alu -10 300 1 1206 163 80 73 chr1 2118316 2118616 -280075048 + AluJo SINE Alu 1 302 -10 674 197 16 8 chr1 2119829 2119956 -280073708 + FLAM_C SINE Alu 1 128 -5 1717 163 35 0 chr1 2119960 2120242 -280073422 + AluJb SINE Alu 2 293 -19 252 203 47 31 chr1 2122770 2122834 -280070830 + L1MC3 LINE L1 7496 7560 -225 292 169 31 15 chr1 2122896 2122961 -280070703 + L1MD3 LINE L1 7920 7985 -10 1427 202 40 64 chr1 2122962 2123418 -280070246 + L1 LINE L1 3510 3954 -2192 1262 161 5 0 chr1 2123545 2123750 -280069914 - AluSx SINE Alu -106 206 1 764 197 0 0 chr1 2123752 2123884 -280069780 - AluJo/FLAM SINE Alu -169 133 2 2059 125 0 3 chr1 2123892 2124189 -280069475 - AluSp SINE Alu -17 296 1 2475 65 0 7 chr1 2125182 2125492 -280068172 + AluY SINE Alu 1 308 -3 2455 64 0 6 chr1 2127561 2127872 -280065792 + AluY SINE Alu 1 309 -2 1884 136 4 0 chr1 2127921 2128224 -280065440 - AluSc SINE Alu 0 304 1 1892 155 0 7 chr1 2128226 2128529 -280065135 - AluSx SINE Alu -11 301 1 1904 123 17 17 chr1 2128535 2128828 -280064836 - AluSp SINE Alu -20 293 1 780 191 0 14 chr1 2128828 2128969 -280064695 - AluJb SINE Alu -171 141 3 1860 134 20 0 chr1 2128975 2129267 -280064397 - AluSx SINE Alu -14 298 1 2087 100 3 32 chr1 2130318 2130629 -280063035 - AluSp SINE Alu -11 302 1 2054 126 0 0 chr1 2131442 2131736 -280061928 - AluSq SINE Alu -19 294 1 296 161 18 0 chr1 2133731 2133787 -280059877 - MLT1I LTR MaLR 0 409 353 1554 206 0 13 chr1 2133874 2134175 -280059489 + AluJb SINE Alu 1 297 -15 1971 121 10 10 chr1 2134183 2134473 -280059191 + AluSx SINE Alu 13 302 -10 281 261 203 7 chr1 2134523 2134661 -280059003 - MLT1A1 LTR MaLR -73 292 128 2856 224 49 42 chr1 2134703 2134738 -280058926 - L1M4 LINE L1 -1434 4712 4679 1964 100 0 0 chr1 2134738 2134998 -280058666 + AluSx SINE Alu 2 261 -51 2856 224 49 42 chr1 2134998 2135132 -280058532 - L1M4 LINE L1 -1467 4679 4547 2138 102 0 10 chr1 2135132 2135437 -280058227 - AluSx SINE Alu -10 302 1 2856 224 49 42 chr1 2135437 2135558 -280058106 - L1M4 LINE L1 -1599 4547 4428 2431 72 7 0 chr1 2135558 2135865 -280057799 + AluY SINE Alu 1 309 -2 2856 224 49 42 chr1 2135865 2136257 -280057407 - L1M4 LINE L1 -1718 4428 4040 1805 113 4 0 chr1 2136257 2136513 -280057151 + AluSp SINE Alu 49 305 -8 1968 92 58 20 chr1 2136514 2136806 -280056858 + AluY SINE Alu 1 303 -8 2856 224 49 42 chr1 2136806 2137240 -280056424 - L1M4 LINE L1 -2105 4041 3510 292 169 31 15 chr1 2137241 2137306 -280056358 - L1MD3 LINE L1 -10 7985 7920 250 203 47 31 chr1 2137368 2137432 -280056232 - L1MC3 LINE L1 -225 7560 7496 1700 123 22 75 chr1 2139235 2139553 -280054111 + AluSq SINE Alu 1 301 -12 854 200 0 25 chr1 2139553 2139713 -280053951 + AluSg/x SINE Alu 138 293 -17 842 102 16 23 chr1 2139796 2139924 -280053740 - FLAM_C SINE Alu -16 127 1 1863 129 13 26 chr1 2139926 2140017 -280053647 - AluSx SINE Alu -13 299 208 1495 182 102 62 chr1 2140017 2140450 -280053214 + LTR7 LTR ERV1 1 450 0 1863 129 13 26 chr1 2140450 2140661 -280053003 - AluSx SINE Alu -104 208 1 489 134 24 0 chr1 2140666 2140748 -280052916 - Alu SINE Alu 0 310 227 2137 158 140 0 chr1 2140767 2141107 -280052557 - LTR10A LTR ERV1 -62 547 119 1829 135 204 13 chr1 2141107 2141485 -280052179 + LTR7 LTR ERV1 1 450 0 2137 158 140 0 chr1 2141485 2141624 -280052040 - LTR10A LTR ERV1 -490 119 1 25 35 0 52 chr1 2142175 2142233 -280051431 + GC_rich Low_complexity Low_complexity 1 55 0 189 68 68 0 chr1 2142346 2142390 -280051274 + (CGGGG)n Simple_repeat Simple_repeat 1 47 0 680 135 10 0 chr1 2142910 2143014 -280050650 - AluSq/x SINE Alu -207 105 1 1171 194 0 5 chr1 2144733 2144955 -280048709 - AluSg/x SINE Alu -7 305 85 1721 145 39 0 chr1 2144958 2145241 -280048423 - AluSx SINE Alu -18 294 1 2028 108 20 7 chr1 2146268 2146574 -280047090 - AluSq SINE Alu 0 313 4 1776 163 20 0 chr1 2146576 2146876 -280046788 - AluSx SINE Alu -6 306 1 318 339 6 27 chr1 2147786 2147969 -280045695 + (CACG)n Simple_repeat Simple_repeat 1 179 0 * 494 279 6 6 chr1 2147881 2148060 -280045604 + (CA)n Simple_repeat Simple_repeat 1 179 0 315 238 17 0 chr1 2148088 2148260 -280045404 + (CA)n Simple_repeat Simple_repeat 2 176 0 383 279 0 53 chr1 2148284 2148474 -280045190 + (CA)n Simple_repeat Simple_repeat 1 180 0 216 0 0 0 chr1 2148531 2148555 -280045109 + (CA)n Simple_repeat Simple_repeat 2 25 0 2057 114 0 10 chr1 2149095 2149392 -280044272 - AluSg SINE Alu -16 294 1 1170 144 35 5 chr1 2150673 2150875 -280042789 + AluJb SINE Alu 85 292 -20 2148 76 7 26 chr1 2150887 2151191 -280042473 + AluY SINE Alu 12 309 -2 1827 118 3 88 chr1 2151564 2151893 -280041771 - AluSx SINE Alu -11 301 1 2058 138 0 3 chr1 2151900 2152205 -280041459 - AluSp SINE Alu -9 304 1 2416 67 0 0 chr1 2155278 2155578 -280038086 - AluY SINE Alu -11 300 1 1470 195 21 7 chr1 2155590 2155872 -280037792 - AluJb SINE Alu -26 286 1 1948 143 13 0 chr1 2155876 2156183 -280037481 - AluSx SINE Alu -1 311 1 2157 124 0 10 chr1 2157819 2158126 -280035538 - AluSq SINE Alu -8 305 2 270 196 18 0 chr1 2159974 2160030 -280033634 - MLT1I LTR MaLR 0 409 353 1568 191 20 10 chr1 2160117 2160411 -280033253 + AluJb SINE Alu 1 297 -15 2805 3 0 0 chr1 2160412 2160720 -280032944 + AluYa5 SINE Alu 1 308 -3 1646 164 3 24 chr1 2160737 2161029 -280032635 + AluSx SINE Alu 4 289 -23 2148 112 7 0 chr1 2161037 2161342 -280032322 + AluSc SINE Alu 1 307 -2 2334 80 0 16 chr1 2161356 2161670 -280031994 + AluY SINE Alu 1 309 -2 817 248 8 29 chr1 2363121 2363359 -279830305 + AluSq SINE Alu 4 236 -77 231 302 113 0 chr1 2366783 2366889 -279826775 + MER58C DNA MER1_type 77 194 -21 216 268 61 12 chr1 2369984 2370066 -279823598 - L2 LINE L2 -50 3222 3137 531 251 4 92 chr1 2373166 2373405 -279820259 - L1MA10 LINE L1 0 6334 6117 309 250 0 43 chr1 2376986 2377150 -279816514 + (GGGTG)n Simple_repeat Simple_repeat 3 159 0 211 274 32 0 chr1 2377669 2377731 -279815933 + MER5B DNA MER1_type 1 64 -114 392 331 162 0 chr1 2378729 2378883 -279814781 - MER5A DNA MER1_type -6 183 5 280 358 54 18 chr1 2385740 2385961 -279807703 + MIR SINE MIR 22 250 -12 1651 148 8 4 chr1 2386593 2386849 -279806815 + AluJo SINE Alu 3 259 -53 463 169 19 32 chr1 2386870 2387024 -279806640 + GA-rich Low_complexity Low_complexity 5 156 0 1589 144 95 3 chr1 2387033 2387318 -279806346 + AluJo SINE Alu 1 311 -1 231 88 0 0 chr1 2391050 2391084 -279802580 + (GGGA)n Simple_repeat Simple_repeat 2 35 0 247 306 0 12 chr1 2394135 2394220 -279799444 + (CA)n Simple_repeat Simple_repeat 1 84 0 498 280 0 4 chr1 2396508 2396740 -279796924 + (TG)n Simple_repeat Simple_repeat 1 230 0 239 239 182 0 chr1 2398696 2398784 -279794880 - L2 LINE L2 -5 3267 3164 201 248 272 8 chr1 2400043 2400168 -279793496 - MER5A DNA MER1_type 0 189 32 255 289 100 0 chr1 2401446 2401536 -279792128 + MIR SINE MIR 94 192 -70 226 286 26 0 chr1 2402113 2402190 -279791474 + L2 LINE L2 2896 2974 -339 973 278 58 8 chr1 2405595 2405958 -279787706 + MLT1C LTR MaLR 11 391 -76 324 274 62 18 chr1 2406560 2406673 -279786991 - MIR3 SINE MIR -10 198 81 413 146 10 29 chr1 2408439 2408542 -279785122 + CT-rich Low_complexity Low_complexity 2 102 0 2502 56 0 0 chr1 2408810 2409115 -279784549 + AluY SINE Alu 1 305 -6 307 216 15 0 chr1 2412161 2412246 -279781418 + L1MB5 LINE L1 5688 5773 -393 433 283 114 4 chr1 2412429 2412666 -279780998 + L1MB5 LINE L1 5880 6142 -32 210 357 0 0 chr1 2416383 2416523 -279777141 + (TG)n Simple_repeat Simple_repeat 2 141 0 192 210 32 16 chr1 2416576 2416638 -279777026 + L2 LINE L2 2907 2969 -303 213 24 98 0 chr1 2417210 2417251 -279776413 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 257 309 79 8 chr1 2417982 2418108 -279775556 - MIR3 SINE MIR -63 145 11 216 0 0 0 chr1 2422073 2422097 -279771567 + (T)n Simple_repeat Simple_repeat 1 24 0 276 30 0 0 chr1 2422219 2422252 -279771412 + (CA)n Simple_repeat Simple_repeat 1 33 0 279 325 16 8 chr1 2422273 2422396 -279771268 + (CA)n Simple_repeat Simple_repeat 1 124 0 195 276 0 0 chr1 2422421 2422497 -279771167 + (CA)n Simple_repeat Simple_repeat 1 76 0 270 357 7 7 chr1 2422526 2422666 -279770998 + (CA)n Simple_repeat Simple_repeat 1 140 0 1432 288 31 6 chr1 2428696 2429175 -279764489 + L1MB5 LINE L1 5684 6174 0 2168 115 0 6 chr1 2429208 2429521 -279764143 + AluSq SINE Alu 1 311 -2 180 125 0 0 chr1 2431513 2431545 -279762119 + (TCCCC)n Simple_repeat Simple_repeat 3 34 0 2426 247 61 7 chr1 2433413 2434121 -279759543 + L1MB7 LINE L1 5427 6172 -12 1421 285 42 0 chr1 2434202 2434609 -279759055 - MER82 DNA MER2_type 0 653 230 476 182 17 149 chr1 2434621 2434802 -279758862 + Tigger1 DNA MER2_type 1 157 -2261 * 647 207 173 0 chr1 2434800 2434979 -279758685 + Tigger1 DNA MER2_type 2209 2418 0 * 808 245 15 15 chr1 2434979 2435177 -279758487 - MER82 DNA MER2_type -455 198 1 1925 172 0 6 chr1 2435829 2436143 -279757521 - AluJo SINE Alu 0 312 1 2106 130 7 0 chr1 2438875 2439176 -279754488 + AluSx SINE Alu 1 303 -9 1541 189 7 0 chr1 2439369 2439665 -279753999 + MER47A DNA MER2_type 69 366 0 249 289 45 77 chr1 2444604 2444760 -279748904 - MIR3 SINE MIR -37 171 21 22 0 0 0 chr1 2445420 2445442 -279748222 + AT_rich Low_complexity Low_complexity 1 22 0 396 0 0 0 chr1 2446513 2446557 -279747107 + (CA)n Simple_repeat Simple_repeat 1 44 0 251 243 0 58 chr1 2447545 2447648 -279746016 + GA-rich Low_complexity Low_complexity 2 98 0 760 41 0 0 chr1 2448888 2448985 -279744679 + AluSc SINE Alu 212 308 -1 298 374 6 18 chr1 2450236 2450399 -279743265 + (TG)n Simple_repeat Simple_repeat 2 162 0 244 259 84 69 chr1 2450712 2450843 -279742821 - MIR3 SINE MIR -45 163 31 186 43 0 0 chr1 2456381 2456404 -279737260 + (CAGAGA)n Simple_repeat Simple_repeat 2 24 0 1675 140 0 0 chr1 2457833 2458069 -279735595 - AluSx SINE Alu -76 236 1 227 345 18 0 chr1 2460539 2460649 -279733015 + (CACG)n Simple_repeat Simple_repeat 1 112 0 381 228 0 102 chr1 2461376 2461573 -279732091 + (TAAA)n Simple_repeat Simple_repeat 4 180 0 243 262 19 56 chr1 2461586 2461743 -279731921 + (TGAA)n Simple_repeat Simple_repeat 1 151 0 2184 117 3 0 chr1 2463745 2464053 -279729611 - AluSg SINE Alu -1 309 1 253 411 47 0 chr1 2464331 2464498 -279729166 - MIR SINE MIR -37 225 44 474 165 124 0 chr1 2469276 2469373 -279724291 + MIR SINE MIR 36 144 -118 348 337 29 38 chr1 2470342 2470580 -279723084 - MIR SINE MIR -14 248 20 338 177 0 31 chr1 2470634 2470730 -279722934 + (CAT)n Simple_repeat Simple_repeat 3 95 0 1080 130 11 6 chr1 2470751 2471104 -279722560 + (CACCAT)n Simple_repeat Simple_repeat 1 356 0 258 231 0 0 chr1 2471132 2471223 -279722441 + (CAT)n Simple_repeat Simple_repeat 2 92 0 385 319 36 22 chr1 2471255 2471393 -279722271 - MIR SINE MIR -31 231 92 286 339 17 0 chr1 2472221 2472336 -279721328 + MIR SINE MIR 66 182 -80 293 200 0 0 chr1 2473918 2473973 -279719691 + MER2 DNA MER2_type 40 94 -251 216 97 0 0 chr1 2474098 2474129 -279719535 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 490 315 98 49 chr1 2474181 2474568 -279719096 - MLT1I LTR MaLR -3 406 1 196 279 16 49 chr1 2474680 2474741 -279718923 - MIR SINE MIR -12 250 192 2300 57 4 0 chr1 2474917 2475221 -279718443 - AluY SINE Alu 0 305 1 582 280 30 10 chr1 2475223 2475423 -279718241 - L1MC2 LINE L1 -16 6328 6125 420 326 71 10 chr1 2475435 2475631 -279718033 - L1MC2 LINE L1 -253 6091 5884 7950 28 5 3 chr1 2476503 2477552 -279716112 - L1PA3 LINE L1 -1018 5128 4078 7676 27 3 3 chr1 2477552 2478586 -279715078 + L1PA3 LINE L1 5116 6150 0 198 0 0 0 chr1 2478586 2478608 -279715056 + (TTAAA)n Simple_repeat Simple_repeat 4 25 0 201 74 0 0 chr1 2480472 2480499 -279713165 + (CACCT)n Simple_repeat Simple_repeat 3 29 0 231 176 39 0 chr1 2482552 2482603 -279711061 + C-rich Low_complexity Low_complexity 3 55 0 184 300 67 22 chr1 2486067 2486157 -279707507 + MER5A DNA MER1_type 61 154 -35 428 337 56 22 chr1 2487342 2487520 -279706144 - MIR SINE MIR -72 190 7 565 230 11 0 chr1 2487642 2487820 -279705844 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 273 228 0 0 chr1 2487835 2487914 -279705750 + (TGGA)n Simple_repeat Simple_repeat 4 82 0 674 201 0 22 chr1 2487931 2488115 -279705549 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 925 174 7 0 chr1 2488127 2488419 -279705245 + (TGGA)n Simple_repeat Simple_repeat 1 294 0 930 159 3 0 chr1 2488554 2488872 -279704792 + (TGGA)n Simple_repeat Simple_repeat 1 319 0 270 0 0 0 chr1 2488888 2488918 -279704746 + (GCTG)n Simple_repeat Simple_repeat 1 30 0 219 139 0 0 chr1 2488919 2488955 -279704709 + (TGGA)n Simple_repeat Simple_repeat 4 39 0 203 275 73 55 chr1 2490334 2490443 -279703221 - MIR SINE MIR -111 151 41 1108 242 109 19 chr1 2490497 2490918 -279702746 + MLT1C LTR MaLR 9 467 0 1657 225 42 9 chr1 2491930 2492378 -279701286 - L1MB3 LINE L1 -8 6175 5713 214 204 0 0 chr1 2492629 2492673 -279700991 + MIR SINE MIR 98 141 -67 21 36 0 0 chr1 2494828 2494856 -279698808 + AT_rich Low_complexity Low_complexity 1 28 0 400 321 71 12 chr1 2495309 2495477 -279698187 - MIR SINE MIR -80 182 5 205 392 39 0 chr1 2496006 2496136 -279697528 + MIR SINE MIR 105 239 -23 326 232 32 95 chr1 2496586 2496776 -279696888 + G-rich Low_complexity Low_complexity 2 179 0 220 258 62 21 chr1 2496820 2496917 -279696747 + G-rich Low_complexity Low_complexity 2 102 0 324 252 65 26 chr1 2496938 2497093 -279696571 + G-rich Low_complexity Low_complexity 2 162 0 253 340 30 0 chr1 2497918 2498018 -279695646 + MIR SINE MIR 81 183 -79 936 275 57 8 chr1 2501002 2501373 -279692291 + MLT1C LTR MaLR 75 463 -4 312 292 35 0 chr1 2502504 2502617 -279691047 + L1MB4 LINE L1 5946 6062 -118 * 518 326 26 5 chr1 2502610 2502803 -279690861 + L1MB4 LINE L1 5978 6174 -6 477 352 28 0 chr1 2503993 2504172 -279689492 + MIR SINE MIR 50 233 -29 734 178 17 23 chr1 2504860 2505034 -279688630 + MER53 DNA DNA 13 185 -4 1864 214 26 5 chr1 2505241 2505620 -279688044 + MLT1B LTR MaLR 4 390 0 333 256 53 53 chr1 2505810 2505826 -279687838 + L1M4 LINE L1 3069 3084 -3062 2002 110 23 10 chr1 2505826 2506134 -279687530 + AluSx SINE Alu 1 312 0 333 256 53 53 chr1 2506134 2506250 -279687414 + L1M4 LINE L1 3083 3201 -2945 53 57 0 0 chr1 2506433 2506521 -279687143 + AT_rich Low_complexity Low_complexity 1 88 0 180 0 0 0 chr1 2507453 2507473 -279686191 + (T)n Simple_repeat Simple_repeat 1 20 0 319 203 14 0 chr1 2507596 2507665 -279685999 - MER53 DNA DNA -117 72 3 999 100 0 0 chr1 2512468 2512618 -279681046 + (TGGA)n Simple_repeat Simple_repeat 4 153 0 1878 151 3 10 chr1 2514310 2514622 -279679042 - AluSx SINE Alu -2 310 1 205 325 33 0 chr1 2514670 2514744 -279678920 - MIR SINE MIR -61 147 71 183 328 76 23 chr1 2517093 2517224 -279676440 - MIR3 SINE MIR -46 162 25 462 190 27 54 chr1 2517672 2517856 -279675808 + (CA)n Simple_repeat Simple_repeat 1 179 0 210 207 29 23 chr1 2517897 2518071 -279675593 + (CA)n Simple_repeat Simple_repeat 1 175 0 437 228 47 12 chr1 2518082 2518253 -279675411 + (CA)n Simple_repeat Simple_repeat 1 177 0 350 268 48 18 chr1 2518292 2518460 -279675204 + (CA)n Simple_repeat Simple_repeat 1 173 0 2148 91 3 0 chr1 2521119 2521431 -279672233 + AluSx SINE Alu 1 313 0 319 229 135 0 chr1 2528447 2528543 -279665121 + MIR SINE MIR 35 143 -65 22 0 0 0 chr1 2533290 2533312 -279660352 + AT_rich Low_complexity Low_complexity 1 22 0 390 362 54 25 chr1 2533384 2533667 -279659997 + L1M4 LINE L1 4407 4697 -1449 22 0 0 0 chr1 2534076 2534098 -279659566 + AT_rich Low_complexity Low_complexity 1 22 0 224 175 16 0 chr1 2535008 2535071 -279658593 + GA-rich Low_complexity Low_complexity 1 64 0 234 128 0 0 chr1 2535416 2535455 -279658209 + (CA)n Simple_repeat Simple_repeat 1 39 0 474 228 12 20 chr1 2535495 2535850 -279657814 + (CA)n Simple_repeat Simple_repeat 1 351 0 245 105 0 0 chr1 2540354 2540392 -279653272 + tRNA-Gly-GGA tRNA tRNA 1 38 -37 180 0 0 0 chr1 2542090 2542110 -279651554 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 205 304 0 38 chr1 2546050 2546129 -279647535 + (CACG)n Simple_repeat Simple_repeat 2 77 0 267 189 0 0 chr1 2546646 2546699 -279646965 + (TG)n Simple_repeat Simple_repeat 2 54 0 590 251 0 6 chr1 2546746 2546921 -279646743 + (CA)n Simple_repeat Simple_repeat 1 174 0 511 252 3 10 chr1 2550191 2550505 -279643159 + (TG)n Simple_repeat Simple_repeat 1 311 0 219 139 0 0 chr1 2550521 2550557 -279643107 + (CGTG)n Simple_repeat Simple_repeat 3 38 0 760 189 0 11 chr1 2550570 2550750 -279642914 + (TG)n Simple_repeat Simple_repeat 1 178 0 441 270 79 11 chr1 2551130 2551319 -279642345 + MER20 DNA MER1_type 5 206 -13 207 200 22 0 chr1 2551387 2551432 -279642232 + CT-rich Low_complexity Low_complexity 4 49 0 180 225 12 25 chr1 2553307 2553387 -279640277 + CT-rich Low_complexity Low_complexity 2 80 0 1345 110 0 88 chr1 2555768 2556027 -279637637 - AluSg/x SINE Alu 0 312 86 249 314 0 10 chr1 2556532 2556634 -279637030 + L1M4 LINE L1 4934 5034 -1112 217 296 10 61 chr1 2556763 2556861 -279636803 + MIR SINE MIR 102 194 -68 239 313 115 0 chr1 2558194 2558290 -279635374 + L2 LINE L2 2420 2526 -788 979 209 164 21 chr1 2561418 2561748 -279631916 + MLT1B LTR MaLR 14 390 0 213 273 81 30 chr1 2562659 2562758 -279630906 + MIR SINE MIR 43 146 -62 225 94 0 0 chr1 2574954 2574986 -279618678 + (TGAA)n Simple_repeat Simple_repeat 2 33 0 2236 84 17 0 chr1 2575818 2576145 -279617519 + AluSx SINE Alu 6 337 0 1987 80 58 11 chr1 2576146 2576455 -279617209 + AluY SINE Alu 1 311 0 27 0 0 0 chr1 2576585 2576612 -279617052 + AT_rich Low_complexity Low_complexity 1 27 0 266 211 0 60 chr1 2577594 2577727 -279615937 + (GGCTG)n Simple_repeat Simple_repeat 1 125 0 291 329 90 7 chr1 2579259 2579414 -279614250 - MIR SINE MIR -83 179 12 24 0 0 0 chr1 2589516 2589540 -279604124 + AT_rich Low_complexity Low_complexity 1 24 0 270 81 0 0 chr1 2590447 2590484 -279603180 + (CA)n Simple_repeat Simple_repeat 2 38 0 195 292 0 15 chr1 2590597 2590662 -279603002 + MIR SINE MIR 80 143 -119 24 53 0 0 chr1 2595005 2595043 -279598621 + GC_rich Low_complexity Low_complexity 1 38 0 214 235 0 0 chr1 2595252 2595303 -279598361 + C-rich Low_complexity Low_complexity 1 51 0 99 82 0 0 chr1 2595359 2595591 -279598073 + GC_rich Low_complexity Low_complexity 1 232 0 225 0 0 0 chr1 2595814 2595839 -279597825 + (CCG)n Simple_repeat Simple_repeat 2 26 0 211 209 30 30 chr1 2596351 2596418 -279597246 + C-rich Low_complexity Low_complexity 4 70 0 203 250 19 0 chr1 2599461 2599513 -279594151 + CT-rich Low_complexity Low_complexity 2 54 0 22 0 0 0 chr1 2601111 2601133 -279592531 + GC_rich Low_complexity Low_complexity 1 22 0 216 189 0 0 chr1 2601458 2601495 -279592169 + MIR SINE MIR 108 144 -118 314 328 38 8 chr1 2604261 2604392 -279589272 - MIR SINE MIR -100 162 28 1198 177 0 0 chr1 2605706 2605926 -279587738 + L1MB8 LINE L1 5764 5983 -195 966 284 156 16 chr1 2606104 2606547 -279587117 - L2 LINE L2 0 3313 2809 1450 213 25 50 chr1 2606551 2606983 -279586681 + MLT1D LTR MaLR 89 503 -2 1003 265 58 11 chr1 2607327 2607686 -279585978 - HAL1 LINE L1 -895 1612 1237 293 282 261 31 chr1 2607691 2608017 -279585647 - HAL1 LINE L1 -1544 963 563 416 315 164 42 chr1 2608027 2608167 -279585497 - HAL1 LINE L1 -2046 461 339 2089 103 10 10 chr1 2608167 2608459 -279585205 - AluSq SINE Alu -21 292 1 416 315 164 42 chr1 2608459 2608727 -279584937 - HAL1 LINE L1 -2168 339 3 377 300 42 17 chr1 2609009 2609129 -279584535 + L1ME4a LINE L1 5978 6100 -21 1102 145 0 16 chr1 2609168 2609354 -279584310 + AluJb SINE Alu 129 311 -1 1079 263 138 5 chr1 2609804 2610188 -279583476 - L1MB4 LINE L1 0 6180 5746 2544 113 17 87 chr1 2611264 2611724 -279581940 + MSTA LTR MaLR 1 428 0 335 306 9 9 chr1 2612503 2612611 -279581053 + L2 LINE L2 3206 3313 0 628 172 22 21 chr1 2612627 2612908 -279580756 + (TGGA)n Simple_repeat Simple_repeat 1 281 0 919 160 7 19 chr1 2612950 2613219 -279580445 + (TGGA)n Simple_repeat Simple_repeat 1 265 0 755 189 15 15 chr1 2613233 2613766 -279579898 + (TGGG)n Simple_repeat Simple_repeat 1 533 0 261 243 0 0 chr1 2613782 2613852 -279579812 + (TGGG)n Simple_repeat Simple_repeat 3 72 0 3202 217 29 41 chr1 2615823 2616879 -279576785 - L1MB4 LINE L1 -893 5253 4210 2198 253 44 6 chr1 2616881 2617958 -279575706 - L1MB4 LINE L1 -2698 3448 2128 1577 264 67 32 chr1 2617965 2618909 -279574755 - L1MEc LINE L1 -4287 2109 1133 712 174 0 43 chr1 2618953 2619091 -279574573 - FLAM_C SINE Alu -1 132 1 6599 156 56 48 chr1 2619241 2619771 -279573893 + Tigger1 DNA MER2_type 936 1460 -958 2441 138 40 0 chr1 2619771 2620142 -279573522 + L1PA15 LINE L1 5777 6162 -3 6599 156 56 48 chr1 2620142 2620615 -279573049 + Tigger1 DNA MER2_type 1460 1928 -490 1753 179 3 0 chr1 2620615 2620911 -279572753 - AluJo SINE Alu -15 297 1 6599 156 56 48 chr1 2620911 2621232 -279572432 + Tigger1 DNA MER2_type 1928 2277 -141 2064 129 10 0 chr1 2621232 2621542 -279572122 - AluSq SINE Alu 0 313 1 6599 156 56 48 chr1 2621542 2621686 -279571978 + Tigger1 DNA MER2_type 2277 2418 0 338 323 76 66 chr1 2621832 2622030 -279571634 + L1ME LINE L1 3595 3794 -2352 1028 154 0 0 chr1 2622050 2622206 -279571458 + AluJo SINE Alu 3 158 -154 186 209 0 0 chr1 2622338 2622381 -279571283 + (TGGA)n Simple_repeat Simple_repeat 3 45 0 268 344 62 43 chr1 2622534 2622599 -279571065 + L1ME LINE L1 3784 3846 -2300 2064 128 6 6 chr1 2622599 2622911 -279570753 + AluSx SINE Alu 1 312 0 268 344 62 43 chr1 2622911 2623599 -279570065 + L1ME LINE L1 3846 4559 -1587 1010 215 10 0 chr1 2623599 2623804 -279569860 - L1MA4 LINE L1 -7 6293 6087 268 344 62 43 chr1 2623804 2623960 -279569704 + L1ME LINE L1 4559 4711 -1435 343 299 49 14 chr1 2624392 2624536 -279569128 + L1ME LINE L1 5364 5512 -654 226 285 58 7 chr1 2624820 2624957 -279568707 + (CA)n Simple_repeat Simple_repeat 1 144 0 * 251 248 57 25 chr1 2624886 2625043 -279568621 + (CATA)n Simple_repeat Simple_repeat 1 162 0 * 400 217 59 19 chr1 2624974 2625289 -279568375 + (CA)n Simple_repeat Simple_repeat 1 327 0 212 146 0 42 chr1 2625446 2625494 -279568170 + (GGGGA)n Simple_repeat Simple_repeat 1 46 0 306 331 64 25 chr1 2626375 2626532 -279567132 - MIR SINE MIR -92 170 8 308 248 51 15 chr1 2626839 2626976 -279566688 - LTR37A LTR ERV1 -1 425 284 197 343 97 22 chr1 2627424 2627558 -279566106 + L2 LINE L2 3103 3246 -26 544 158 20 82 chr1 2628106 2628252 -279565412 - MER31B LTR ERV1 -295 171 35 296 235 15 0 chr1 2630793 2630861 -279562803 - L1MC5 LINE L1 -918 7043 6975 653 220 147 81 chr1 2631385 2631767 -279561897 - MLT2D LTR ERVL -2 412 6 362 275 165 16 chr1 2638400 2638582 -279555082 + MIR SINE MIR 30 238 -24 1735 157 59 0 chr1 2639401 2639688 -279553976 - AluJo SINE Alu -8 304 1 192 409 0 0 chr1 2640133 2640226 -279553438 + L2 LINE L2 3146 3238 -75 864 219 0 13 chr1 2640408 2640729 -279552935 - MLT1B LTR MaLR -28 362 5 253 326 131 20 chr1 2641688 2641933 -279551731 + LTR16A1 LTR ERVL 1 272 -185 306 355 23 61 chr1 2642152 2642366 -279551298 + MIR SINE MIR 12 217 -45 620 295 52 44 chr1 2643383 2643769 -279549895 + L1MEd LINE L1 32 420 -5699 344 220 18 37 chr1 2643828 2643937 -279549727 + L1M4 LINE L1 14 120 -6422 266 264 28 0 chr1 2643944 2644016 -279549648 + ERVL LTR ERVL 3784 3857 -1907 1547 176 105 14 chr1 2644048 2644411 -279549253 + MSTA LTR MaLR 6 401 -27 435 291 34 22 chr1 2644548 2644727 -279548937 + L1M4 LINE L1 2630 2810 -3834 837 167 0 7 chr1 2647390 2647528 -279546136 + AluJb SINE Alu 160 296 -16 23 33 0 0 chr1 2651208 2651238 -279542426 + GC_rich Low_complexity Low_complexity 1 30 0 814 271 31 68 chr1 2653215 2653599 -279540065 - MLT1B LTR MaLR -12 378 9 526 263 186 43 chr1 2653818 2654141 -279539523 - MLT1F1 LTR MaLR -28 539 171 388 111 25 0 chr1 2654163 2654244 -279539420 + (CAGAGA)n Simple_repeat Simple_repeat 2 84 0 206 191 26 70 chr1 2655148 2655263 -279538401 + (GTGTG)n Simple_repeat Simple_repeat 1 110 0 2410 59 0 0 chr1 2655447 2655736 -279537928 - AluY SINE Alu -22 289 1 1103 66 0 0 chr1 2655738 2655874 -279537790 - AluSq/x SINE Alu -177 136 1 414 121 0 0 chr1 2655875 2655941 -279537723 + THE1B LTR MaLR 299 364 0 368 242 66 0 chr1 2656970 2657078 -279536586 - MLT1I LTR MaLR -243 166 53 273 200 15 0 chr1 2657122 2657187 -279536477 + MER53 DNA DNA 99 164 -25 * 283 200 15 0 chr1 2657128 2657187 -279536477 - MER53 DNA DNA -94 95 36 2655 168 7 2 chr1 2657187 2657609 -279536055 - MSTB LTR MaLR 0 426 3 9352 165 21 24 chr1 2657612 2659267 -279534397 - MSTB-int LTR MaLR -1 1650 1 2686 158 7 19 chr1 2659267 2659698 -279533966 - MSTB LTR MaLR 0 426 1 509 278 17 52 chr1 2666540 2666713 -279526951 - MIR SINE MIR -76 186 20 209 333 48 48 chr1 2670577 2670703 -279522961 + MER91B DNA MER1_type 30 155 -35 1479 284 103 8 chr1 2670933 2671399 -279522265 - L1M4 LINE L1 -1326 4803 4383 1985 142 3 0 chr1 2671399 2671687 -279521977 + AluSx SINE Alu 1 289 -23 1479 284 103 8 chr1 2671687 2672133 -279521531 - L1M4 LINE L1 -1746 4383 3804 318 283 51 74 chr1 2672137 2672740 -279520924 - L1MEd LINE L1 -3756 2373 1819 413 278 56 48 chr1 2672781 2672998 -279520666 - L1MEd LINE L1 -4590 1720 1506 2526 101 27 27 chr1 2672998 2673373 -279520291 + THE1C LTR MaLR 1 375 0 10403 103 45 39 chr1 2673373 2674944 -279518720 + THE1C-int LTR MaLR 1 1580 0 2356 118 21 24 chr1 2674946 2675320 -279518344 + THE1C LTR MaLR 3 375 0 413 278 56 48 chr1 2675320 2675490 -279518174 - L1MEd LINE L1 -4804 1506 1326 795 292 42 132 chr1 2675652 2676206 -279517458 - L1MEd LINE L1 -5036 1093 601 323 127 16 0 chr1 2676943 2677006 -279516658 + GA-rich Low_complexity Low_complexity 2 65 0 895 207 93 21 chr1 2679140 2679420 -279514244 - MLT1C LTR MaLR -162 305 6 249 168 84 28 chr1 2679825 2679968 -279513696 + (CAGCC)n Simple_repeat Simple_repeat 5 155 0 448 258 110 12 chr1 2681355 2681518 -279512146 + MER45C DNA AcHobo 42 220 -733 22 35 0 0 chr1 2682077 2682106 -279511558 + AT_rich Low_complexity Low_complexity 1 29 0 317 208 28 0 chr1 2682966 2683038 -279510626 - MER69 DNA AcHobo -3 2523 2450 411 308 18 0 chr1 2684392 2684561 -279509103 + (CA)n Simple_repeat Simple_repeat 1 172 0 276 328 5 43 chr1 2684497 2684683 -279508981 + (CATA)n Simple_repeat Simple_repeat 2 180 0 * 378 242 4 0 chr1 2684739 2685018 -279508646 + (CA)n Simple_repeat Simple_repeat 1 280 0 468 239 6 10 chr1 2685055 2685365 -279508299 + (CA)n Simple_repeat Simple_repeat 1 308 0 290 227 127 9 chr1 2685412 2685522 -279508142 + MLT1A2 LTR MaLR 181 303 -71 281 240 13 0 chr1 2685534 2685609 -279508055 + (CA)n Simple_repeat Simple_repeat 2 77 0 22 0 0 0 chr1 2686330 2686352 -279507312 + AT_rich Low_complexity Low_complexity 1 22 0 1532 155 85 7 chr1 2686359 2686630 -279507034 + AluJo SINE Alu 3 294 -18 280 281 21 42 chr1 2687585 2687681 -279505983 - MIR3 SINE MIR -20 188 95 454 299 24 6 chr1 2688049 2688224 -279505440 - MIR SINE MIR -63 145 11 1113 276 97 11 chr1 2688312 2688775 -279504889 + HAL1 LINE L1 1337 1839 -668 540 283 251 35 chr1 2688933 2689321 -279504343 + L1M2 LINE L1 1666 3127 -82 394 282 0 15 chr1 2689481 2689612 -279504052 - HAL1 LINE L1 -753 1754 1626 330 294 5 0 chr1 2691381 2691595 -279502069 + (TG)n Simple_repeat Simple_repeat 1 215 0 234 322 0 0 chr1 2691631 2691811 -279501853 + (TG)n Simple_repeat Simple_repeat 1 180 0 274 314 0 4 chr1 2691825 2692055 -279501609 + (TG)n Simple_repeat Simple_repeat 1 228 0 837 236 47 79 chr1 2695036 2695417 -279498247 - MLT1B LTR MaLR -21 369 1 245 326 139 0 chr1 2696991 2697120 -279496544 + MIR SINE MIR 46 192 -70 258 314 68 8 chr1 2698321 2698439 -279495225 + L2 LINE L2 3143 3267 -5 306 255 0 0 chr1 2699673 2699767 -279493897 + (TG)n Simple_repeat Simple_repeat 1 94 0 439 227 37 37 chr1 2699986 2700097 -279493567 + MER53 DNA DNA 1 114 -75 2259 160 24 3 chr1 2700097 2700479 -279493185 + MLT1B LTR MaLR 1 390 0 439 227 37 37 chr1 2700479 2700530 -279493134 + MER53 DNA DNA 113 163 -26 1080 147 0 0 chr1 2702650 2703394 -279490270 + (CAGCC)n Simple_repeat Simple_repeat 1 744 0 942 156 23 61 chr1 2704759 2705022 -279488642 - MLT1D LTR MaLR -206 299 47 532 381 34 19 chr1 2706430 2706750 -279486914 + L1MB5 LINE L1 5677 6001 -173 728 242 4 30 chr1 2706894 2707125 -279486539 + L1MB8 LINE L1 5948 6172 -6 246 333 28 0 chr1 2707305 2707413 -279486251 + MER53 DNA DNA 22 132 -57 289 172 16 0 chr1 2707466 2707530 -279486134 - MER53 DNA DNA -124 65 1 404 220 22 0 chr1 2709019 2709110 -279484554 + MIR SINE MIR 28 120 -142 1228 143 5 35 chr1 2710850 2711053 -279482611 + MER107 DNA MER1_type 1 197 0 448 259 125 14 chr1 2711841 2712182 -279481482 + MLT1C LTR MaLR 1 451 -16 268 400 0 7 chr1 2713404 2713544 -279480120 + (TG)n Simple_repeat Simple_repeat 1 139 0 227 250 0 30 chr1 2713613 2713745 -279479919 + (TG)n Simple_repeat Simple_repeat 1 128 0 248 239 32 13 chr1 2713797 2713952 -279479712 + (TG)n Simple_repeat Simple_repeat 1 158 0 386 250 0 22 chr1 2713985 2714169 -279479495 + (TG)n Simple_repeat Simple_repeat 1 180 0 373 240 11 17 chr1 2714186 2714365 -279479299 + (TG)n Simple_repeat Simple_repeat 1 178 0 785 243 0 0 chr1 2717359 2717507 -279476157 + FRAM SINE Alu 4 151 -15 196 248 0 16 chr1 2717892 2718017 -279475647 + (CA)n Simple_repeat Simple_repeat 1 123 0 233 320 96 6 chr1 2720408 2720564 -279473100 - MLT1K LTR MaLR -330 258 89 757 211 42 0 chr1 2721779 2721969 -279471695 - MLT1B LTR MaLR -78 312 115 428 190 117 15 chr1 2722057 2722180 -279471484 - MLT1B LTR MaLR -252 138 28 1347 266 59 11 chr1 2722899 2723372 -279470292 - L1MC1 LINE L1 0 6333 5838 262 250 0 0 chr1 2725116 2725176 -279468488 + GA-rich Low_complexity Low_complexity 3 62 0 209 269 29 0 chr1 2727237 2727341 -279466323 + (CACAC)n Simple_repeat Simple_repeat 5 111 0 850 285 79 25 chr1 2727700 2728142 -279465522 - MLT1D LTR MaLR 0 505 40 424 319 30 0 chr1 2728772 2728938 -279464726 + ERVL LTR ERVL 2145 2315 -3449 600 271 79 5 chr1 2729045 2729248 -279464416 - MER20 DNA MER1_type -1 218 1 576 225 60 161 chr1 2730732 2730823 -279462841 + MLT1B LTR MaLR 1 100 -290 294 29 0 0 chr1 2730823 2730858 -279462806 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 576 225 60 161 chr1 2730858 2730869 -279462795 + MLT1B LTR MaLR 100 111 -279 1981 136 0 0 chr1 2730869 2731148 -279462516 - AluSx SINE Alu -33 279 1 576 225 60 161 chr1 2731148 2731461 -279462203 + MLT1B LTR MaLR 111 375 -15 756 339 61 24 chr1 2732030 2732617 -279461047 + ERVL LTR ERVL 4768 5376 -388 202 290 0 19 chr1 2732650 2732757 -279460907 + (TG)n Simple_repeat Simple_repeat 1 105 0 518 239 6 17 chr1 2732770 2732950 -279460714 + (TG)n Simple_repeat Simple_repeat 1 178 0 489 249 0 17 chr1 2733007 2733188 -279460476 + (TG)n Simple_repeat Simple_repeat 1 178 0 517 216 0 28 chr1 2733249 2733430 -279460234 + (TG)n Simple_repeat Simple_repeat 1 176 0 1286 278 34 9 chr1 2734555 2734998 -279458666 + MLT1C LTR MaLR 4 457 -10 417 317 11 11 chr1 2736239 2736419 -279457245 + (TG)n Simple_repeat Simple_repeat 1 180 0 250 132 38 0 chr1 2736683 2736736 -279456928 + (GGGTG)n Simple_repeat Simple_repeat 4 58 0 219 294 95 8 chr1 2736881 2737007 -279456657 + MIR3 SINE MIR 65 201 -7 348 257 73 0 chr1 2738369 2738478 -279455186 - MER53 DNA DNA -72 117 1 1165 254 69 8 chr1 2738733 2739123 -279454541 + MLT1C LTR MaLR 9 422 -45 248 209 60 0 chr1 2739160 2739227 -279454437 + MLT1C LTR MaLR 435 505 0 263 336 9 9 chr1 2739795 2739911 -279453753 + (CACCC)n Simple_repeat Simple_repeat 3 118 0 428 134 52 22 chr1 2740505 2740639 -279453025 + GA-rich Low_complexity Low_complexity 4 141 0 370 302 81 75 chr1 2748227 2748585 -279445079 - L2 LINE L2 -7 3265 2906 240 341 28 50 chr1 2751353 2751532 -279442132 + L2 LINE L2 2996 3170 -102 239 330 19 29 chr1 2752137 2752240 -279441424 - MIR SINE MIR -128 134 33 2046 119 7 3 chr1 2753606 2753900 -279439764 - AluSx SINE Alu -17 295 1 1180 44 11 33 chr1 2753916 2754099 -279439565 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 273 283 0 53 chr1 2759561 2759656 -279434008 - MIR SINE MIR -62 146 60 197 340 0 0 chr1 2761796 2761846 -279431818 + L2 LINE L2 3223 3272 0 295 356 8 8 chr1 2761948 2762066 -279431598 + (CACG)n Simple_repeat Simple_repeat 4 121 0 334 279 6 57 chr1 2765067 2765225 -279428439 + (CGTG)n Simple_repeat Simple_repeat 2 151 0 668 257 125 64 chr1 2766568 2766976 -279426688 - MLT1C LTR MaLR -26 441 9 227 306 7 0 chr1 2767833 2767980 -279425684 + (CAGC)n Simple_repeat Simple_repeat 4 151 0 236 242 16 0 chr1 2768401 2768463 -279425201 + G-rich Low_complexity Low_complexity 3 65 0 630 325 59 6 chr1 2769797 2770117 -279423547 - MLT1E LTR MaLR -164 429 93 690 106 35 7 chr1 2771353 2771495 -279422169 + CT-rich Low_complexity Low_complexity 1 146 0 1070 296 41 11 chr1 2771495 2771937 -279421727 - L1MC3 LINE L1 -727 7058 6604 282 203 0 14 chr1 2772631 2772700 -279420964 - L1MD3 LINE L1 -385 7610 7543 * 287 207 11 35 chr1 2772697 2772784 -279420880 + L1MD3 LINE L1 7911 7995 0 231 261 0 0 chr1 2774002 2774048 -279419616 + polypurine Low_complexity Low_complexity 3 48 0 1541 165 83 0 chr1 2777092 2777358 -279416306 - AluJo SINE Alu -21 291 4 1149 235 74 6 chr1 2777405 2777728 -279415936 + L1ME2 LINE L1 5451 5795 -371 940 255 18 24 chr1 2778892 2779221 -279414443 + L1ME2 LINE L1 5785 6111 -53 1909 206 18 8 chr1 2779230 2779628 -279414036 - L1MB3 LINE L1 -1 6182 5781 888 189 65 9 chr1 2779633 2779850 -279413814 - Tigger7 DNA MER2_type -9 2482 2254 243 247 27 0 chr1 2779920 2779993 -279413671 - Tigger7 DNA MER2_type -295 2192 2118 3142 210 54 1 chr1 2780000 2780723 -279412941 - Tigger7 DNA MER2_type -1724 763 3 735 247 68 11 chr1 2780757 2781020 -279412644 - L1MB3 LINE L1 -402 5778 5501 320 149 32 75 chr1 2781899 2781993 -279411671 - L1M3 LINE L1 -619 5549 5460 308 333 0 18 chr1 2782416 2782587 -279411077 + G-rich Low_complexity Low_complexity 2 169 0 490 286 0 0 chr1 2783184 2783296 -279410368 + MER81 DNA DNA 3 114 0 413 307 132 21 chr1 2783650 2783839 -279409825 - MIR SINE MIR -7 255 46 2301 109 0 0 chr1 2784008 2784319 -279409345 - AluSx SINE Alu -1 311 1 1122 223 106 64 chr1 2785030 2785445 -279408219 + MLT1D LTR MaLR 5 445 -60 1997 92 44 4 chr1 2785445 2785754 -279407910 - AluY SINE Alu 0 320 1 1122 223 106 64 chr1 2785754 2785818 -279407846 + MLT1D LTR MaLR 445 505 0 307 303 0 13 chr1 2785919 2785995 -279407669 + L1ME LINE L1 1261 1335 -5195 232 252 69 88 chr1 2785996 2786155 -279407509 + L1ME LINE L1 1766 1921 -4619 * 1522 231 42 5 chr1 2786139 2786571 -279407093 + L1MB7 LINE L1 5565 6012 -172 1044 79 14 0 chr1 2786571 2786710 -279406954 - AluSp/q SINE Alu -17 296 156 567 179 62 0 chr1 2786717 2786862 -279406802 + L1MB7 LINE L1 6031 6184 0 441 251 44 98 chr1 2786862 2787065 -279406599 + L1ME LINE L1 1954 2145 -4576 2298 66 0 3 chr1 2787183 2787470 -279406194 + AluY SINE Alu 1 286 -25 574 275 39 14 chr1 2787486 2787693 -279405971 + LTR40b LTR ERVL 154 365 -97 592 246 94 70 chr1 2787709 2788355 -279405309 + L1ME LINE L1 2284 2910 -3630 524 279 56 45 chr1 2788378 2788611 -279405053 + L1ME LINE L1 2802 3042 -3498 1380 269 22 11 chr1 2788611 2788972 -279404692 - MLT1A1 LTR MaLR 0 365 1 524 279 56 45 chr1 2788972 2789093 -279404571 + L1ME LINE L1 3042 3160 -3380 330 253 0 0 chr1 2789093 2789172 -279404492 - MER96 DNA MER1_type? 0 175 97 918 292 45 14 chr1 2789216 2789634 -279404030 + L1ME LINE L1 4301 4731 -1809 393 118 0 128 chr1 2789637 2789739 -279403925 - LTR52 LTR ERVL 0 421 333 528 167 0 0 chr1 2789740 2789884 -279403780 + (CA)n Simple_repeat Simple_repeat 1 144 0 863 260 17 51 chr1 2789886 2790236 -279403428 - LTR52 LTR ERVL -80 341 4 1612 147 44 34 chr1 2790297 2790832 -279402832 + MER51A LTR ERV1 1 622 -12 902 301 135 26 chr1 2790853 2791137 -279402527 + L1ME LINE L1 4768 5020 -1520 2232 125 0 0 chr1 2791137 2791448 -279402216 + AluSx SINE Alu 1 311 -1 902 301 135 26 chr1 2791448 2791813 -279401851 + L1ME LINE L1 5020 5488 -1052 1276 305 52 45 chr1 2791827 2792054 -279401610 + L1ME LINE L1 5573 5797 -767 2228 100 3 10 chr1 2792054 2792363 -279401301 + AluSg SINE Alu 1 307 -3 1276 305 52 45 chr1 2792363 2792941 -279400723 + L1ME LINE L1 5797 6389 -175 3391 141 11 19 chr1 2793059 2793590 -279400074 + MER1A DNA MER1_type 1 527 0 180 0 0 0 chr1 2794428 2794448 -279399216 + (A)n Simple_repeat Simple_repeat 1 20 0 295 242 40 0 chr1 2796010 2796109 -279397555 + MER82 DNA MER2_type 338 440 -213 251 296 37 0 chr1 2796148 2796229 -279397435 + MER82 DNA MER2_type 570 653 0 234 48 0 95 chr1 2796229 2796271 -279397393 + L1MB7 LINE L1 6099 6136 -48 1006 226 169 10 chr1 2798247 2798561 -279395103 - MLT1A1 LTR MaLR -1 364 1 343 229 74 16 chr1 2798632 2798754 -279394910 - MER117 DNA MER1_type -34 163 35 193 344 16 0 chr1 2798902 2798966 -279394698 + L2 LINE L2 3195 3259 -13 23 0 0 0 chr1 2799831 2799854 -279393810 + GC_rich Low_complexity Low_complexity 1 23 0 430 248 26 0 chr1 2800118 2800231 -279393433 - MER3 DNA MER1_type -25 184 69 3791 98 4 6 chr1 2802268 2802780 -279390884 + MER9 LTR ERVK 1 511 0 347 214 30 15 chr1 2802858 2802989 -279390675 + CT-rich Low_complexity Low_complexity 2 134 0 673 277 33 5 chr1 2803211 2803395 -279390269 - MER53 DNA DNA 0 189 1 843 222 111 0 chr1 2804700 2804961 -279388703 + MLT1B LTR MaLR 94 383 -7 453 19 0 0 chr1 2805766 2805820 -279387844 + (CA)n Simple_repeat Simple_repeat 2 55 0 1614 190 169 5 chr1 2805945 2806313 -279387351 + MSTA LTR MaLR 1 428 0 265 214 18 0 chr1 2806548 2806604 -279387060 + MLT1D LTR MaLR 1 57 -448 645 252 66 34 chr1 2806612 2806993 -279386671 - MLT2B1 LTR ERVL -1 413 2 1333 198 88 35 chr1 2806996 2807396 -279386268 + MLT1D LTR MaLR 77 497 -8 320 295 29 22 chr1 2807397 2807536 -279386128 - L1ME LINE L1 -293 5828 5689 416 300 6 6 chr1 2810863 2811408 -279382256 + (TG)n Simple_repeat Simple_repeat 1 545 0 285 315 0 0 chr1 2811448 2811521 -279382143 + MIR SINE MIR 76 148 -114 507 164 214 0 chr1 2811521 2811661 -279382003 - MER69A DNA AcHobo -3 174 5 349 372 0 16 chr1 2811902 2812085 -279381579 + (CA)n Simple_repeat Simple_repeat 1 180 0 3277 127 45 0 chr1 2813246 2813735 -279379929 - MER75 DNA T2_type -3 511 1 340 287 110 27 chr1 2813785 2814218 -279379446 + MLT1H LTR MaLR 31 540 -2 1542 178 4 11 chr1 2814218 2814487 -279379177 - AluJb SINE Alu -45 267 1 1873 145 7 10 chr1 2815241 2815537 -279378127 + AluJb SINE Alu 1 295 -17 4385 131 101 47 chr1 2816219 2816999 -279376665 - LTR12 LTR ERV1 0 826 5 2272 171 48 34 chr1 2817026 2817609 -279376055 - pTR5 LTR ERV1 -1111 1327 737 1325 240 110 2 chr1 2817813 2818222 -279375442 - MLT1D LTR MaLR -52 453 1 783 124 91 0 chr1 2818471 2818592 -279375072 - FLAM_C SINE Alu -1 132 1 23 54 0 0 chr1 2818592 2818629 -279375035 + AT_rich Low_complexity Low_complexity 1 37 0 226 259 73 134 chr1 2819402 2819649 -279374015 - L2 LINE L2 -11 3261 3030 202 306 92 0 chr1 2822606 2822704 -279370960 - L2 LINE L2 -30 3242 3136 209 185 37 0 chr1 2822821 2822875 -279370789 - L2 LINE L2 -372 2942 2887 * 227 322 63 28 chr1 2822867 2823010 -279370654 + MIR SINE MIR 37 184 -78 867 220 258 0 chr1 2823164 2823501 -279370163 + MER31B LTR ERV1 43 466 0 206 241 0 19 chr1 2824313 2824367 -279369297 + CT-rich Low_complexity Low_complexity 1 53 0 337 306 133 31 chr1 2830917 2831143 -279362521 - L2 LINE L2 -344 2970 2702 2244 106 0 0 chr1 2831143 2831436 -279362228 - AluSq SINE Alu -19 294 2 337 306 133 31 chr1 2831436 2831526 -279362138 - L2 LINE L2 -612 2702 2622 299 317 0 0 chr1 2831526 2831706 -279361958 + GA-rich Low_complexity Low_complexity 1 180 0 * 336 300 0 0 chr1 2831595 2831775 -279361889 + (GCTG)n Simple_repeat Simple_repeat 1 180 0 362 289 0 0 chr1 2831794 2831967 -279361697 + (GCTG)n Simple_repeat Simple_repeat 1 173 0 338 321 0 0 chr1 2831890 2832236 -279361428 + (TGGG)n Simple_repeat Simple_repeat 1 346 0 * 295 328 0 0 chr1 2832218 2832392 -279361272 + (GCTG)n Simple_repeat Simple_repeat 4 177 0 * 201 353 82 0 chr1 2832876 2832961 -279360703 + MIR SINE MIR 155 246 -16 803 265 95 33 chr1 2834266 2834602 -279359062 - MLT1A1 LTR MaLR -8 357 1 657 261 96 58 chr1 2834831 2835250 -279358414 + MLT1H LTR MaLR 14 490 -59 1349 136 10 5 chr1 2835252 2835458 -279358206 - AluJb SINE Alu -19 293 87 313 185 0 0 chr1 2835458 2835523 -279358141 + MLT1H LTR MaLR 485 549 0 687 312 44 16 chr1 2835620 2836050 -279357614 + L1ME LINE L1 3851 4292 -1854 1328 208 14 41 chr1 2836214 2836508 -279357156 + AluJb SINE Alu 10 295 -17 211 260 0 19 chr1 2836542 2836646 -279357018 + GA-rich Low_complexity Low_complexity 3 104 0 237 306 0 10 chr1 2836674 2836772 -279356892 + L1ME LINE L1 4741 4837 -1309 465 252 67 20 chr1 2836908 2837336 -279356328 + L1ME LINE L1 5026 5481 -689 237 155 14 84 chr1 2837338 2837409 -279356255 + L1P5 LINE L1 5397 5462 -692 981 285 138 42 chr1 2837487 2838243 -279355421 + L1ME LINE L1 51 918 -5152 1506 172 69 0 chr1 2838243 2838505 -279355159 + AluJb SINE Alu 31 310 -2 981 285 138 42 chr1 2838505 2838696 -279354968 + L1ME LINE L1 918 1089 -4981 330 281 94 25 chr1 2839439 2839599 -279354065 - MIR SINE MIR -28 234 64 1822 113 58 0 chr1 2841393 2841695 -279351969 - AluSx SINE Alu 0 318 1 540 92 92 0 chr1 2842061 2842224 -279351440 + (CA)n Simple_repeat Simple_repeat 1 178 0 185 370 151 0 chr1 2845354 2845473 -279348191 + MIR SINE MIR 118 254 -8 247 292 0 0 chr1 2845485 2845574 -279348090 + (CAGCC)n Simple_repeat Simple_repeat 1 89 0 1894 216 50 34 chr1 2845646 2846478 -279347186 + LTR13 LTR ERVK 1 901 -106 348 250 0 0 chr1 2847695 2847767 -279345897 + MIR SINE MIR 78 149 -59 7002 182 43 118 chr1 2847770 2849221 -279344443 + L1MB3 LINE L1 2878 4436 -1710 712 189 57 46 chr1 2849221 2849396 -279344268 + MER8 DNA MER2_type 1 177 -62 7002 182 43 118 chr1 2849396 2849429 -279344235 + L1MB3 LINE L1 4436 4470 -1676 341 186 43 0 chr1 2849429 2849499 -279344165 - Tigger2 DNA MER2_type -2645 73 1 7002 182 43 118 chr1 2849499 2850409 -279343255 + L1MB3 LINE L1 4470 5319 -827 1367 94 5 5 chr1 2850409 2850601 -279343063 - AluSg/x SINE Alu -24 288 97 4203 171 9 28 chr1 2850608 2850906 -279342758 + L1MB3 LINE L1 5317 5619 -564 2265 95 0 3 chr1 2850906 2851212 -279342452 + AluSg SINE Alu 1 305 -5 4203 171 9 28 chr1 2851212 2851797 -279341867 + L1MB3 LINE L1 5619 6183 0 353 193 0 0 chr1 3053056 3053113 -279140551 - AluJ/FLAM SINE Alu -245 57 1 1030 230 111 51 chr1 3053830 3054261 -279139403 - MLT1C LTR MaLR 0 467 11 837 176 20 0 chr1 3055124 3055272 -279138392 + FRAM SINE Alu 4 154 -22 1315 152 94 18 chr1 3056739 3057016 -279136648 - MER7A DNA MER2_type 0 346 51 1540 152 141 0 chr1 3057404 3057667 -279135997 + AluJb SINE Alu 1 300 -12 2610 56 0 0 chr1 3058386 3058688 -279134976 - AluY SINE Alu -9 302 1 1541 130 0 0 chr1 3058886 3059114 -279134550 + AluSg/x SINE Alu 81 310 0 858 236 86 17 chr1 3059605 3059906 -279133758 + MER33 DNA MER1_type 1 322 -2 210 236 0 0 chr1 3060014 3060069 -279133595 + CT-rich Low_complexity Low_complexity 1 55 0 25 51 0 0 chr1 3060376 3060415 -279133249 + AT_rich Low_complexity Low_complexity 1 39 0 2171 96 30 23 chr1 3060700 3061001 -279132663 - AluSp SINE Alu -8 305 3 33 43 0 0 chr1 3061049 3061096 -279132568 + AT_rich Low_complexity Low_complexity 1 47 0 1447 133 13 4 chr1 3061175 3061400 -279132264 + AluJb SINE Alu 73 299 -13 1722 127 0 4 chr1 3062094 3062330 -279131334 - AluSq SINE Alu 0 313 79 784 132 0 150 chr1 3062331 3062498 -279131166 - AluSc SINE Alu -35 274 133 2417 79 0 3 chr1 3062763 3063054 -279130610 + AluSg SINE Alu 2 291 -19 1845 145 91 0 chr1 3063171 3063447 -279130217 + AluJo SINE Alu 1 301 -11 2080 144 0 0 chr1 3063737 3064036 -279129628 + AluSx SINE Alu 1 299 -13 2495 37 27 7 chr1 3064445 3064743 -279128921 + AluY SINE Alu 1 304 -7 2070 131 17 7 chr1 3065985 3066283 -279127381 + AluSx SINE Alu 1 301 -11 2270 121 0 3 chr1 3066287 3066594 -279127070 + AluSx SINE Alu 1 306 -6 266 243 196 0 chr1 3066826 3066933 -279126731 + MIR SINE MIR 15 142 -120 2069 128 7 0 chr1 3068374 3068664 -279125000 + AluJo SINE Alu 1 292 -20 599 268 141 19 chr1 3068665 3068878 -279124786 + MIR SINE MIR 21 259 -3 225 0 0 0 chr1 3070329 3070354 -279123310 + (A)n Simple_repeat Simple_repeat 1 25 0 2304 93 3 17 chr1 3070499 3070801 -279122863 - AluY SINE Alu -13 298 1 729 213 128 0 chr1 3070801 3070942 -279122722 - FRAM SINE Alu -5 161 3 2190 96 21 10 chr1 3071149 3071440 -279122224 + AluSg SINE Alu 1 294 -16 24 0 0 0 chr1 3073136 3073160 -279120504 + AT_rich Low_complexity Low_complexity 1 24 0 2276 98 14 0 chr1 3073487 3073782 -279119882 + AluSc SINE Alu 1 299 -10 1921 156 14 0 chr1 3073786 3074075 -279119589 + AluJb SINE Alu 1 293 -19 234 250 16 16 chr1 3075658 3075722 -279117942 + L2 LINE L2 3207 3270 -2 2452 67 0 13 chr1 3075865 3076178 -279117486 - AluY SINE Alu -2 309 1 712 156 16 8 chr1 3076224 3076352 -279117312 - MER46A DNA MER2_type 0 236 108 354 316 33 0 chr1 3078000 3078152 -279115512 + L1MB1 LINE L1 6005 6161 -7 357 211 87 0 chr1 3078722 3078826 -279114838 - L2 LINE L2 -18 3295 3183 572 190 83 0 chr1 3078982 3079103 -279114561 - L1MB3 LINE L1 -1 6182 6052 1785 179 13 16 chr1 3079150 3079457 -279114207 + AluJb SINE Alu 1 306 -6 1562 121 8 32 chr1 3079552 3079801 -279113863 - AluJb SINE Alu -64 248 6 21 82 0 0 chr1 3080177 3080226 -279113438 + AT_rich Low_complexity Low_complexity 1 49 0 236 274 0 16 chr1 3081158 3081220 -279112444 - L1ME3A LINE L1 -199 5971 5911 285 329 121 9 chr1 3081240 3081471 -279112193 - L1ME3A LINE L1 -358 5812 5556 253 342 40 13 chr1 3082012 3082237 -279111427 - L1ME3A LINE L1 -832 5314 5084 451 111 0 141 chr1 3082247 3082286 -279111378 - MSTA LTR MaLR 0 428 410 2315 77 7 0 chr1 3082286 3082573 -279111091 + AluSp SINE Alu 1 289 -24 451 111 0 141 chr1 3082573 3082632 -279111032 - MSTA LTR MaLR -18 410 344 234 116 0 0 chr1 3084410 3084453 -279109211 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 265 296 48 0 chr1 3084525 3084650 -279109014 - L1MC5 LINE L1 -106 7855 7725 1175 276 95 49 chr1 3084790 3085645 -279108019 - L1MC5 LINE L1 -446 7515 6615 346 280 62 52 chr1 3086655 3086848 -279106816 - MLT1E1 LTR MaLR -163 491 297 247 258 82 44 chr1 3087037 3087196 -279106468 - L1ME LINE L1 -5124 946 782 844 226 118 19 chr1 3087196 3087519 -279106145 - L1MB7 LINE L1 -9 6175 5821 251 190 35 0 chr1 3087530 3087588 -279106076 - L1ME LINE L1 -5297 773 714 260 356 56 23 chr1 3087613 3087829 -279105835 + L1M4 LINE L1 4943 5165 -981 398 136 99 12 chr1 3087835 3087916 -279105748 + L1MB2 LINE L1 6028 6115 -56 288 216 58 90 chr1 3088012 3088231 -279105433 - L2 LINE L2 -535 2779 2499 252 264 169 41 chr1 3088638 3088952 -279104712 - MLT1H LTR MaLR -111 438 85 2089 102 3 39 chr1 3089317 3089622 -279104042 - AluSx SINE Alu -18 294 1 1902 127 57 0 chr1 3090587 3090870 -279102794 + AluSx SINE Alu 1 299 -13 1184 125 6 0 chr1 3092703 3092871 -279100793 - AluSg/x SINE Alu -24 288 120 333 216 0 0 chr1 3092971 3093059 -279100605 + G-rich Low_complexity Low_complexity 1 88 0 209 159 45 0 chr1 3093085 3093129 -279100535 + G-rich Low_complexity Low_complexity 6 51 0 264 284 0 0 chr1 3093143 3093238 -279100426 + G-rich Low_complexity Low_complexity 1 95 0 823 105 0 9 chr1 3093325 3093439 -279100225 + AluSg/x SINE Alu 182 294 -16 183 156 0 0 chr1 3093655 3093687 -279099977 + (TA)n Simple_repeat Simple_repeat 2 33 0 2395 74 0 49 chr1 3093812 3094136 -279099528 - AluSg SINE Alu -2 308 1 21 36 0 0 chr1 3094334 3094362 -279099302 + AT_rich Low_complexity Low_complexity 1 28 0 232 36 0 0 chr1 3095446 3095474 -279098190 + MIR SINE MIR 116 143 -119 2477 84 0 0 chr1 3095951 3096248 -279097416 - AluSx SINE Alu -15 297 1 1273 161 0 28 chr1 3096254 3096472 -279097192 - AluJo SINE Alu -13 299 88 3075 100 16 9 chr1 3096563 3097012 -279096652 - LTR3b LTR ERVK -48 452 1 348 210 180 0 chr1 3097068 3097168 -279096496 + MSTC LTR MaLR 11 128 -268 1830 159 10 0 chr1 3097191 3097481 -279096183 + AluJb SINE Alu 1 293 -19 2502 65 3 0 chr1 3097484 3097776 -279095888 + AluSp SINE Alu 1 293 -20 466 189 90 7 chr1 3097804 3097962 -279095702 + MSTC LTR MaLR 226 428 0 1829 167 7 3 chr1 3097972 3098266 -279095398 - AluJb SINE Alu -13 299 5 2129 133 3 0 chr1 3098297 3098590 -279095074 + AluSx SINE Alu 1 294 -18 278 153 125 0 chr1 3098670 3098742 -279094922 - L1MEc LINE L1 -6048 348 268 1625 126 168 3 chr1 3098769 3099103 -279094561 + MSTA LTR MaLR 1 389 -39 2332 64 0 37 chr1 3099103 3099436 -279094228 + AluY SINE Alu 1 322 0 1954 153 142 14 chr1 3099451 3099942 -279093722 - LOR1-int LTR ERV1 -3269 3936 1515 8221 60 14 5 chr1 3099942 3100940 -279092724 + LTR13 LTR ERVK 1 1007 0 1175 146 19 5 chr1 3100940 3101146 -279092518 + HERVK13 LTR ERVK 1 209 -7907 705 228 213 68 chr1 3101137 3101654 -279092010 + HERVK13 LTR ERVK 727 1318 -6798 * 421 283 12 58 chr1 3101641 3101814 -279091850 + HERVK13 LTR ERVK 3965 4129 -3987 * 3085 244 3 3 chr1 3101805 3103214 -279090450 + HERVK13 LTR ERVK 4572 6092 -2024 * 6199 217 3 24 chr1 3103203 3103437 -279090227 + HERVK13 LTR ERVK 6733 6970 -1146 2404 74 3 0 chr1 3103437 3103746 -279089918 + AluY SINE Alu 1 310 -1 6199 217 3 24 chr1 3103746 3104924 -279088740 + HERVK13 LTR ERVK 6970 8116 0 3702 40 4 0 chr1 3104924 3105401 -279088263 + LTR13 LTR ERVK 1 479 -528 1009 248 4 18 chr1 3105404 3105678 -279087986 - HERVK13 LTR ERVK -2972 5144 4875 1995 119 9 3 chr1 3105680 3106007 -279087657 + THE1A LTR MaLR 27 355 0 1873 129 5 18 chr1 3106007 3106438 -279087226 - LTR38-int LTR ERV1 -1097 689 364 * 2281 173 70 0 chr1 3106424 3106868 -279086796 - LTR38-int LTR ERV1 -1310 476 2 1727 152 29 79 chr1 3106869 3107289 -279086375 - LTR38 LTR ERV1 0 556 158 2176 105 20 0 chr1 3107291 3107597 -279086067 - AluSx SINE Alu 0 312 1 1994 140 11 91 chr1 3107643 3107877 -279085787 - MER4D LTR ERV1 -468 435 184 2219 115 0 0 chr1 3107877 3108182 -279085482 - AluSx SINE Alu -7 305 1 1994 140 11 91 chr1 3108182 3108393 -279085271 - MER4D LTR ERV1 -719 184 26 2382 71 0 6 chr1 3108393 3108704 -279084960 - AluY SINE Alu -2 309 1 1994 140 11 91 chr1 3108704 3108721 -279084943 - MER4D LTR ERV1 -877 26 9 1742 171 4 0 chr1 3108722 3109028 -279084636 + AluJb SINE Alu 1 307 0 1827 126 16 55 chr1 3109037 3109347 -279084317 + AluSx SINE Alu 1 298 -14 2157 99 3 48 chr1 3109454 3109829 -279083835 + MER4A LTR ERV1 1 358 -306 1655 168 7 7 chr1 3109870 3110180 -279083484 + MER4A LTR ERV1 355 664 0 183 302 95 0 chr1 3111442 3111505 -279082159 - MIR SINE MIR -62 200 132 240 297 33 33 chr1 3111571 3111662 -279082002 + L2 LINE L2 3181 3271 -1 2312 85 3 0 chr1 3111794 3112099 -279081565 - AluSx SINE Alu -6 306 1 1736 107 85 0 chr1 3112232 3112503 -279081161 + AluJb SINE Alu 1 294 -18 3875 146 35 50 chr1 3112532 3112651 -279081013 - LTR8A LTR ERV1 0 727 608 2236 101 3 0 chr1 3112651 3112957 -279080707 - AluY SINE Alu -4 307 1 3875 146 35 50 chr1 3112957 3113479 -279080185 - LTR8A LTR ERV1 -119 608 96 1897 112 69 0 chr1 3113479 3113755 -279079909 + AluSp SINE Alu 1 295 -18 3875 146 35 50 chr1 3113755 3113850 -279079814 - LTR8A LTR ERV1 -631 96 1 2215 78 0 4 chr1 3114126 3114407 -279079257 + AluSc SINE Alu 14 293 -16 2053 132 0 0 chr1 3114818 3115107 -279078557 + AluJb SINE Alu 1 289 -23 2298 96 3 0 chr1 3115116 3115419 -279078245 + AluSp SINE Alu 1 304 -9 244 274 12 12 chr1 3119768 3119852 -279073812 + GA-rich Low_complexity Low_complexity 1 84 0 232 229 71 14 chr1 3120143 3120213 -279073451 + MIR SINE MIR 110 183 -79 1834 154 10 7 chr1 3120361 3120654 -279073010 - AluSx SINE Alu -18 294 1 2159 117 0 0 chr1 3120705 3121003 -279072661 + AluSx SINE Alu 6 303 -9 2184 96 14 0 chr1 3121863 3122156 -279071508 - AluSp SINE Alu -16 297 1 2241 113 0 0 chr1 3123432 3123733 -279069931 - AluSq SINE Alu -12 301 1 1776 174 19 6 chr1 3123739 3124055 -279069609 - 7SLRNA srpRNA srpRNA 0 320 1 1563 101 5 5 chr1 3124276 3124493 -279069171 + AluSp SINE Alu 2 218 -95 1136 139 0 6 chr1 3124493 3124665 -279068999 + AluSp SINE Alu 143 313 0 1924 141 3 3 chr1 3124888 3125172 -279068492 - AluJo SINE Alu -28 284 1 220 204 19 37 chr1 3125634 3125688 -279067976 - L3 LINE CR1 -319 1258 1206 2040 110 17 0 chr1 3126047 3126339 -279067325 - AluSc SINE Alu -7 302 6 300 85 64 0 chr1 3126339 3126386 -279067278 - Alu SINE Alu -250 50 1 274 306 12 0 chr1 3126611 3126696 -279066968 + MER7A DNA MER2_type 1 84 -262 189 107 0 0 chr1 3128234 3128262 -279065402 + (GGGA)n Simple_repeat Simple_repeat 1 28 0 252 328 46 27 chr1 3131836 3131962 -279061702 - MIR SINE MIR -46 162 33 203 253 0 40 chr1 3134284 3134359 -279059305 + G-rich Low_complexity Low_complexity 6 77 0 191 122 0 24 chr1 3134461 3134502 -279059162 + (CGGGG)n Simple_repeat Simple_repeat 5 44 0 640 236 10 45 chr1 3135778 3135977 -279057687 + MER63A DNA MER1_type 1 192 -18 236 254 16 16 chr1 3136190 3136253 -279057411 + CT-rich Low_complexity Low_complexity 3 65 0 183 339 57 73 chr1 3137371 3137495 -279056169 - MIR SINE MIR -113 149 28 241 231 62 15 chr1 3138128 3138193 -279055471 - L2 LINE L2 -1 3312 3245 1816 162 7 13 chr1 3138650 3138958 -279054706 + AluJb SINE Alu 1 306 -6 277 341 41 32 chr1 3139125 3139248 -279054416 + MIR SINE MIR 124 247 -15 2294 103 0 0 chr1 3139908 3140209 -279053455 + AluSc SINE Alu 1 301 -8 719 288 126 3 chr1 3140542 3140868 -279052796 + HAL1 LINE L1 1 366 -2141 1717 195 13 3 chr1 3140881 3141189 -279052475 + AluJb SINE Alu 1 311 -1 1333 249 167 34 chr1 3141286 3141994 -279051670 + HAL1 LINE L1 856 1683 -824 2175 117 3 0 chr1 3141994 3142293 -279051371 - AluSq SINE Alu -13 300 1 1333 249 167 34 chr1 3142293 3142382 -279051282 + HAL1 LINE L1 1683 1759 -748 657 248 109 29 chr1 3142465 3142812 -279050852 + HAL1 LINE L1 2133 2507 0 300 286 0 0 chr1 3143711 3143795 -279049869 + CT-rich Low_complexity Low_complexity 2 85 0 212 149 21 0 chr1 3145031 3145078 -279048586 + C-rich Low_complexity Low_complexity 3 50 0 235 289 67 22 chr1 3145243 3145378 -279048286 - MIR3 SINE MIR -61 147 7 489 269 0 8 chr1 3146215 3146361 -279047303 + L1MDa LINE L1 1904 2073 -4493 838 269 46 9 chr1 3146362 3146686 -279046978 + L1MDa LINE L1 3222 3557 -2983 349 139 119 40 chr1 3146723 3146824 -279046840 + L1MC4 LINE L1 7918 8026 -16 474 306 77 32 chr1 3146909 3147157 -279046507 + MLT1K LTR MaLR 264 522 -66 228 245 0 0 chr1 3147225 3147274 -279046390 - L1ME LINE L1 -477 5644 5596 398 323 29 32 chr1 3147471 3147815 -279045849 + L1MDa LINE L1 3543 3885 -2655 2041 116 0 27 chr1 3147817 3148118 -279045546 - AluSg SINE Alu -17 293 1 1735 164 6 25 chr1 3148150 3148468 -279045196 + AluJb SINE Alu 1 312 0 531 155 0 31 chr1 3148483 3148561 -279045103 + AluJ/FRAM SINE Alu 216 292 -20 2150 102 7 0 chr1 3148561 3148855 -279044809 + AluSc SINE Alu 1 296 -13 531 155 0 31 chr1 3148855 3148873 -279044791 + AluJ/FRAM SINE Alu 292 309 -3 303 274 19 0 chr1 3148884 3148990 -279044674 + L1MDa LINE L1 3906 4013 -2527 1831 127 3 47 chr1 3148993 3149104 -279044560 + AluJb SINE Alu 2 116 -196 2336 73 3 3 chr1 3149104 3149406 -279044258 - AluY SINE Alu -9 302 1 1831 127 3 47 chr1 3149406 3149594 -279044070 + AluJb SINE Alu 116 288 -24 211 220 0 0 chr1 3149607 3149657 -279044007 + A-rich Low_complexity Low_complexity 1 50 0 257 289 0 10 chr1 3149681 3149785 -279043879 + L1MDa LINE L1 4025 4127 -2413 181 280 113 48 chr1 3150565 3150682 -279042982 + MIR3 SINE MIR 1 134 -74 2175 101 3 10 chr1 3150682 3150988 -279042676 - AluSg1 SINE Alu -5 304 1 181 280 113 48 chr1 3150988 3151038 -279042626 + MIR3 SINE MIR 134 179 -29 184 343 45 0 chr1 3152368 3152435 -279041229 + MIR3 SINE MIR 112 181 -27 2241 83 9 46 chr1 3153411 3153736 -279039928 + AluSp SINE Alu 1 313 0 256 194 54 75 chr1 3154668 3154761 -279038903 - LTR45B LTR ERV1 -1 488 398 1267 177 165 11 chr1 3154770 3155064 -279038600 + AluSg SINE Alu 1 334 0 2389 58 0 0 chr1 3155146 3155437 -279038227 + AluY SINE Alu 1 291 -20 3882 190 31 52 chr1 3155656 3156646 -279037018 - LTR5 LTR ERVK 0 969 1 1475 199 39 77 chr1 3156770 3156864 -279036800 + MER7A DNA MER2_type 1 97 -2941 2384 79 3 0 chr1 3156864 3157167 -279036497 + AluY SINE Alu 1 304 -7 1475 199 39 77 chr1 3157167 3157434 -279036230 + MER7A DNA MER2_type 97 346 0 3872 181 79 51 chr1 3157900 3158828 -279034836 + LTR13 LTR ERVK 1 954 0 1139 106 0 0 chr1 3159130 3159290 -279034374 + AluSg/x SINE Alu 153 312 0 22 0 0 0 chr1 3159701 3159723 -279033941 + GC_rich Low_complexity Low_complexity 1 22 0 614 347 157 2 chr1 3161447 3161862 -279031802 - L2 LINE L2 -1 3312 2834 221 259 193 7 chr1 3161924 3162059 -279031605 - L2 LINE L2 -637 2677 2518 221 0 0 33 chr1 3162517 3162547 -279031117 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 2096 73 18 0 chr1 3162589 3162863 -279030801 - AluY SINE Alu -32 279 1 1942 122 7 26 chr1 3163113 3163417 -279030247 - AluJb SINE Alu -14 298 1 278 309 112 45 chr1 3164467 3164690 -279028974 - L2 LINE L2 -2 3270 3033 3072 114 109 80 chr1 3165348 3165964 -279027700 - MER51A LTR ERV1 0 634 1 1868 107 52 10 chr1 3166312 3166602 -279027062 + AluSx SINE Alu 1 302 -10 2320 91 0 0 chr1 3169171 3169469 -279024195 - AluSg SINE Alu -12 298 1 283 324 56 21 chr1 3171826 3171968 -279021696 + MIR SINE MIR 3 149 -113 194 250 31 16 chr1 3175059 3175123 -279018541 + MIR SINE MIR 79 143 -119 262 299 86 0 chr1 3176548 3176665 -279016999 - MIR SINE MIR -72 190 64 182 325 51 26 chr1 3177351 3177468 -279016196 - L2 LINE L2 -144 3128 3009 1574 153 29 70 chr1 3178031 3178345 -279015319 - AluJo SINE Alu -2 310 10 830 147 10 28 chr1 3180108 3180651 -279013013 + (TCCA)n Simple_repeat Simple_repeat 1 532 0 789 137 6 27 chr1 3180671 3180854 -279012810 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 738 149 7 18 chr1 3180869 3181148 -279012516 + (TCCA)n Simple_repeat Simple_repeat 1 275 0 620 164 11 27 chr1 3181159 3181342 -279012322 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 753 185 4 15 chr1 3181368 3181639 -279012025 + (TCCA)n Simple_repeat Simple_repeat 1 268 0 253 109 36 18 chr1 3181640 3181695 -279011969 + (CCCA)n Simple_repeat Simple_repeat 1 56 0 2230 101 0 0 chr1 3182012 3182310 -279011354 - AluSx SINE Alu -14 298 1 400 306 38 48 chr1 3183863 3184386 -279009278 - TAR1 Satellite telomeric -570 1541 1024 206 385 19 0 chr1 3186093 3186197 -279007467 - MIR3 SINE MIR -7 201 96 1962 105 30 23 chr1 3186831 3187110 -279006554 + AluSx SINE Alu 1 284 -28 414 0 0 0 chr1 3187110 3187156 -279006508 + (CA)n Simple_repeat Simple_repeat 1 46 0 1962 105 30 23 chr1 3187156 3187180 -279006484 + AluSx SINE Alu 284 306 -6 189 0 0 0 chr1 3188815 3188836 -279004828 + (CCCCG)n Simple_repeat Simple_repeat 5 25 0 345 275 101 0 chr1 3194178 3194316 -278999348 + MIR SINE MIR 20 171 -91 306 106 0 0 chr1 3195178 3195225 -278998439 + (CA)n Simple_repeat Simple_repeat 1 47 0 186 349 177 16 chr1 3195812 3196004 -278997660 - MIR SINE MIR -6 256 34 325 333 8 8 chr1 3196195 3196321 -278997343 + (TG)n Simple_repeat Simple_repeat 1 126 0 401 343 129 5 chr1 3198417 3198618 -278995046 + MIR SINE MIR 2 227 -35 336 308 19 9 chr1 3200694 3200801 -278992863 - MIR SINE MIR -65 197 90 23 0 0 0 chr1 3200917 3200940 -278992724 + GC_rich Low_complexity Low_complexity 1 23 0 283 286 39 77 chr1 3201716 3201858 -278991806 + L1M4 LINE L1 5735 5871 -307 811 181 7 7 chr1 3201864 3202013 -278991651 + FRAM SINE Alu 19 167 -9 201 139 28 0 chr1 3202579 3202615 -278991049 + L2 LINE L2 3137 3173 -99 545 298 99 8 chr1 3202620 3202882 -278990782 + MER33 DNA MER1_type 13 298 -26 418 257 76 76 chr1 3205110 3205238 -278988426 + MIR SINE MIR 23 153 -109 2125 111 0 13 chr1 3205238 3205544 -278988120 + AluSx SINE Alu 1 302 -10 418 257 76 76 chr1 3205544 3205586 -278988078 + MIR SINE MIR 152 193 -69 2029 64 64 4 chr1 3206253 3206520 -278987144 - AluSx SINE Alu -17 295 13 236 234 32 53 chr1 3207238 3207332 -278986332 + C-rich Low_complexity Low_complexity 4 95 0 212 364 96 11 chr1 3209943 3210130 -278983534 - L2 LINE L2 -842 2472 2270 234 298 276 0 chr1 3211072 3211300 -278982364 + L2 LINE L2 2425 2715 -599 233 232 40 0 chr1 3212049 3212148 -278981516 - MSR1 Satellite Satellite -1 110 8 241 227 41 0 chr1 3212260 3212357 -278981307 - MSR1 Satellite Satellite -1 110 10 246 206 41 0 chr1 3212435 3212672 -278980992 - MSR1 Satellite Satellite -1 246 1 349 184 21 100 chr1 3212733 3212923 -278980741 + (CTGGGG)n Simple_repeat Simple_repeat 4 178 0 246 206 41 0 chr1 3212963 3213095 -278980569 - MSR1 Satellite Satellite -1 137 1 289 188 0 134 chr1 3213121 3213323 -278980341 + (CTGGGG)n Simple_repeat Simple_repeat 4 178 0 200 264 127 0 chr1 3213470 3213564 -278980100 - MIR SINE MIR -56 152 46 227 310 30 50 chr1 3213932 3214032 -278979632 + L2 LINE L2 3216 3313 0 189 225 34 0 chr1 3214913 3215002 -278978662 + (CA)n Simple_repeat Simple_repeat 1 92 0 219 317 10 10 chr1 3215029 3215130 -278978534 + (CA)n Simple_repeat Simple_repeat 1 101 0 276 120 0 0 chr1 3219333 3219383 -278974281 + (GGGGA)n Simple_repeat Simple_repeat 4 53 0 333 358 40 0 chr1 3220135 3220286 -278973378 - MIR SINE MIR -78 184 28 534 256 235 21 chr1 3223124 3223503 -278970161 + MLT1K LTR MaLR 19 478 -110 337 190 13 25 chr1 3223643 3223722 -278969942 + MLT1K LTR MaLR 452 529 -59 281 323 50 0 chr1 3226011 3226110 -278967554 - MIR SINE MIR -88 174 71 260 302 62 10 chr1 3226579 3226675 -278966989 - MIR3 SINE MIR -41 167 67 597 294 11 0 chr1 3226687 3226864 -278966800 + L1MB5 LINE L1 5698 5876 -298 372 337 97 42 chr1 3226943 3227631 -278966033 + L1M4c LINE L1 796 1493 -4891 253 318 121 15 chr1 3228165 3228297 -278965367 - MER5A DNA MER1_type 0 189 44 1666 178 0 35 chr1 3229042 3229356 -278964308 + AluJo SINE Alu 1 303 -9 408 232 126 0 chr1 3230032 3230183 -278963481 + MER20 DNA MER1_type 2 171 -48 254 260 82 48 chr1 3230283 3230429 -278963235 - MIR3 SINE MIR -55 153 3 333 340 0 38 chr1 3230585 3230770 -278962894 + C-rich Low_complexity Low_complexity 2 179 0 383 254 6 42 chr1 3230797 3230962 -278962702 + CT-rich Low_complexity Low_complexity 6 164 0 239 274 105 0 chr1 3233001 3233096 -278960568 - MIR SINE MIR -124 138 34 527 291 31 41 chr1 3233436 3233632 -278960032 + MIR SINE MIR 55 248 -14 216 307 160 40 chr1 3235285 3235435 -278958229 - MIR SINE MIR -34 228 61 208 250 111 28 chr1 3236143 3236215 -278957449 + L2 LINE L2 3232 3309 -4 2223 103 3 7 chr1 3236354 3236664 -278957000 - AluSx SINE Alu -3 309 1 198 319 43 11 chr1 3236840 3236934 -278956730 - MIR SINE MIR -103 159 63 313 374 9 9 chr1 3238338 3238445 -278955219 - L1MC5 LINE L1 -167 7794 7688 240 188 25 75 chr1 3238445 3238499 -278955165 + MER116 DNA Mariner 1 51 -29 288 0 0 0 chr1 3238499 3238531 -278955133 + (CA)n Simple_repeat Simple_repeat 2 33 0 240 188 25 75 chr1 3238531 3238556 -278955108 + MER116 DNA Mariner 51 76 -4 2273 94 0 7 chr1 3239270 3239578 -278954086 - AluSc SINE Alu -3 306 1 1069 196 78 156 chr1 3239641 3240181 -278953483 - MLT1D LTR MaLR -7 498 1 191 227 23 0 chr1 3240639 3240683 -278952981 - MIR SINE MIR -24 238 194 873 201 10 45 chr1 3240686 3240885 -278952779 + AluJo SINE Alu 91 282 -30 2033 97 50 13 chr1 3240893 3241192 -278952472 - AluSq SINE Alu -1 312 3 1109 161 0 0 chr1 3241212 3241404 -278952260 + AluSg/x SINE Alu 121 312 0 259 175 225 0 chr1 3243192 3243272 -278950392 + MER39 LTR ERV1 291 388 -319 2096 76 69 3 chr1 3243324 3243613 -278950051 - AluY SINE Alu -3 308 1 412 324 23 6 chr1 3243639 3243815 -278949849 + MER39 LTR ERV1 500 678 -29 188 246 77 31 chr1 3243917 3243982 -278949682 + MIR SINE MIR 86 153 -109 392 182 149 41 chr1 3244320 3244441 -278949223 + MER34C LTR ERV1 4 137 -448 266 250 93 9 chr1 3244659 3244767 -278948897 + LTR48 LTR ERV1 616 732 -55 1082 116 12 6 chr1 3244974 3245138 -278948526 - FRAM SINE Alu -16 160 1 355 231 58 49 chr1 3245143 3245321 -278948343 + L1MCa LINE L1 1898 6983 -1339 1738 157 0 4 chr1 3245352 3245620 -278948044 - AluJb SINE Alu -45 267 1 1095 242 57 75 chr1 3245624 3246409 -278947255 + MER34C-int LTR ERV1 2617 3387 -1549 * 4310 198 44 47 chr1 3246404 3247067 -278946597 + MER34C-int LTR ERV1 3558 4219 -717 1688 123 53 49 chr1 3247067 3247372 -278946292 + AluSx SINE Alu 1 306 0 4310 198 44 47 chr1 3247372 3247887 -278945777 + MER34C-int LTR ERV1 4219 4734 -202 425 155 0 0 chr1 3247972 3248042 -278945622 + MER34C LTR ERV1 3 72 -513 465 96 0 0 chr1 3248042 3248115 -278945549 + MER34C LTR ERV1 1 73 -512 * 472 72 0 0 chr1 3248082 3248151 -278945513 + MER34C LTR ERV1 5 73 -512 457 87 0 0 chr1 3248118 3248187 -278945477 + MER34C LTR ERV1 5 73 -512 * 442 116 0 0 chr1 3248154 3248222 -278945442 + MER34C LTR ERV1 5 72 -513 825 195 30 37 chr1 3248222 3248458 -278945206 + MER34C LTR ERV1 1 234 -351 232 250 23 45 chr1 3248695 3248783 -278944881 + LTR48 LTR ERV1 702 787 0 378 213 56 9 chr1 3249368 3249476 -278944188 - Charlie4a DNA MER1_type -3 505 393 1156 235 24 42 chr1 3249528 3249937 -278943727 + MLT1C LTR MaLR 60 461 -6 991 274 54 3 chr1 3249951 3250265 -278943399 - Charlie4a DNA MER1_type -149 359 30 657 302 19 0 chr1 3250407 3250612 -278943052 + MIR SINE MIR 52 260 -2 2446 47 7 0 chr1 3250854 3251151 -278942513 - AluY SINE Alu -12 299 1 2093 127 0 0 chr1 3251642 3251942 -278941722 - AluSx SINE Alu -12 300 1 625 281 89 13 chr1 3252398 3252633 -278941031 - MIR SINE MIR -6 256 4 2044 125 3 13 chr1 3252847 3253158 -278940506 - AluSx SINE Alu -4 308 1 226 246 16 41 chr1 3254484 3254606 -278939058 + (CGGG)n Simple_repeat Simple_repeat 4 122 0 210 176 0 0 chr1 3256535 3256586 -278937078 + (CATATA)n Simple_repeat Simple_repeat 4 54 0 575 176 61 14 chr1 3256609 3256757 -278936907 - MER53 DNA DNA -15 174 20 23 33 0 0 chr1 3257166 3257196 -278936468 + GC_rich Low_complexity Low_complexity 1 30 0 844 148 104 0 chr1 3260479 3260661 -278933003 - Tigger7 DNA MER2_type -3 2484 2284 * 1093 218 30 11 chr1 3260660 3260922 -278932742 - Tigger7 DNA MER2_type -233 500 234 288 297 48 0 chr1 3261504 3261669 -278931995 + (CCGCG)n Simple_repeat Simple_repeat 4 176 0 224 317 50 0 chr1 3261592 3261753 -278931911 + (CACGT)n Simple_repeat Simple_repeat 1 169 0 * 2291 80 7 0 chr1 3264290 3264590 -278929074 - AluSp SINE Alu -11 302 1 352 340 89 38 chr1 3264590 3264815 -278928849 - L1 LINE L1 -1225 4921 4667 663 216 0 0 chr1 3264815 3264940 -278928724 - FLAM_A SINE Alu -8 125 1 352 340 89 38 chr1 3264940 3264993 -278928671 - L1 LINE L1 -1479 4667 4618 444 320 20 0 chr1 3265057 3265257 -278928407 - L1 LINE L1 -3732 2414 2211 513 376 82 9 chr1 3265311 3265654 -278928010 - L1ME1 LINE L1 -16 6150 5783 287 333 0 18 chr1 3268411 3268522 -278925142 - L1MC5 LINE L1 -173 7788 7680 1857 164 27 0 chr1 3269189 3269487 -278924177 - AluJb SINE Alu -6 306 1 2135 116 0 0 chr1 3271216 3271508 -278922156 - AluJb SINE Alu -20 292 1 253 223 184 10 chr1 3272369 3272472 -278921192 - L2 LINE L2 -14 3258 3138 256 157 0 0 chr1 3272570 3272621 -278921043 - L2 LINE L2 -337 2976 2926 273 375 50 0 chr1 3272960 3273080 -278920584 + L2 LINE L2 2626 2751 -563 27 0 0 0 chr1 3273599 3273626 -278920038 + GC_rich Low_complexity Low_complexity 1 27 0 308 268 154 8 chr1 3273993 3274116 -278919548 + MIR SINE MIR 31 171 -91 21 0 0 0 chr1 3276239 3276260 -278917404 + AT_rich Low_complexity Low_complexity 1 21 0 2079 123 3 10 chr1 3276897 3277206 -278916458 + AluSc SINE Alu 3 309 0 2230 103 0 6 chr1 3277316 3277628 -278916036 + AluSx SINE Alu 1 310 -2 1990 146 11 76 chr1 3277628 3277839 -278915825 + MER4D LTR ERV1 19 187 -716 2201 118 0 0 chr1 3277839 3278144 -278915520 + AluSx SINE Alu 1 305 -7 1990 146 11 76 chr1 3278144 3278378 -278915286 + MER4D LTR ERV1 187 435 -468 1069 55 0 0 chr1 3278424 3278552 -278915112 + AluSq/x SINE Alu 1 128 -184 1948 142 0 0 chr1 3278774 3279077 -278914587 + AluSx SINE Alu 1 303 0 23 0 0 0 chr1 3280497 3280520 -278913144 + GC_rich Low_complexity Low_complexity 1 23 0 299 342 40 13 chr1 3282224 3282449 -278911215 - L1M4 LINE L1 -832 5314 5084 2058 123 10 0 chr1 3282498 3282798 -278910866 + AluSp SINE Alu 1 303 -10 2153 32 4 0 chr1 3485772 3486020 -278707644 + L1PA3 LINE L1 5904 6152 -3 241 200 200 0 chr1 3486096 3486156 -278707508 - L2 LINE L2 -1 3312 3241 508 333 60 9 chr1 3487514 3487730 -278705934 - MIR SINE MIR -16 246 20 315 114 80 0 chr1 3487734 3487822 -278705842 + CT-rich Low_complexity Low_complexity 4 98 0 236 219 0 14 chr1 3487928 3488001 -278705663 + CT-rich Low_complexity Low_complexity 4 75 0 524 190 114 51 chr1 3489861 3490019 -278703645 + MIR SINE MIR 81 248 -14 487 191 6 6 chr1 3490588 3490761 -278702903 + (TG)n Simple_repeat Simple_repeat 2 174 0 195 146 0 0 chr1 3490788 3490829 -278702835 + (TG)n Simple_repeat Simple_repeat 2 42 0 416 233 16 0 chr1 3491189 3491318 -278702346 + GA-rich Low_complexity Low_complexity 1 131 0 1433 131 25 0 chr1 3492647 3492883 -278700781 - LTR19B LTR ERV1 0 580 339 488 355 0 22 chr1 3493826 3494009 -278699655 + (TG)n Simple_repeat Simple_repeat 2 180 0 258 317 96 54 chr1 3494156 3494323 -278699341 - MER5A DNA MER1_type -2 187 14 763 165 104 0 chr1 3494699 3494863 -278698801 + MER105 DNA DNA 17 197 -7 186 299 30 0 chr1 3495747 3495814 -278697850 + L2 LINE L2 3245 3313 0 616 257 196 47 chr1 3496196 3496558 -278697106 + MLT1J2 LTR MaLR 35 450 0 271 348 18 18 chr1 3496615 3496727 -278696937 + L2 LINE L2 2981 3092 -180 245 169 17 0 chr1 3496912 3496971 -278696693 + GA-rich Low_complexity Low_complexity 1 60 0 555 102 66 0 chr1 3497228 3497365 -278696299 + (TCCA)n Simple_repeat Simple_repeat 1 146 0 644 108 52 8 chr1 3497495 3497747 -278695917 + (TCCA)n Simple_repeat Simple_repeat 1 263 0 680 108 67 0 chr1 3497912 3498355 -278695309 + (TCCA)n Simple_repeat Simple_repeat 1 472 0 1492 135 154 34 chr1 3498431 3498697 -278694967 + AluSg SINE Alu 1 298 -2 599 210 4 4 chr1 3498747 3498985 -278694679 + (TCTA)n Simple_repeat Simple_repeat 1 238 0 300 82 20 20 chr1 3498985 3499034 -278694630 + (TCCA)n Simple_repeat Simple_repeat 1 49 0 213 121 0 0 chr1 3499034 3499067 -278694597 + (TC)n Simple_repeat Simple_repeat 2 34 0 483 63 0 0 chr1 3499073 3499136 -278694528 + (TTCC)n Simple_repeat Simple_repeat 2 64 0 846 251 39 60 chr1 3499150 3499481 -278694183 + MLT1I LTR MaLR 84 407 -2 376 299 68 47 chr1 3499481 3499715 -278693949 - L1ME LINE L1 -530 5591 5353 3163 31 3 0 chr1 3501919 3502311 -278691353 - L1PA2 LINE L1 -429 5726 5334 4008 20 7 2 chr1 3502311 3502782 -278690882 + L1PA2 LINE L1 5693 6155 0 26 0 0 0 chr1 3502797 3502823 -278690841 + AT_rich Low_complexity Low_complexity 1 26 0 5284 140 17 10 chr1 3502849 3503886 -278689778 + L1PA16 LINE L1 5100 6150 -16 191 283 44 44 chr1 3504512 3504625 -278689039 + MIR SINE MIR 19 131 -77 306 129 0 0 chr1 3504781 3504843 -278688821 + (CTCA)n Simple_repeat Simple_repeat 2 63 0 278 258 10 93 chr1 3505086 3505183 -278688481 - L2 LINE L2 -16 3297 3209 1806 263 30 16 chr1 3505651 3506157 -278687507 - LTR40a LTR ERVL -3 516 4 265 308 26 13 chr1 3506158 3506236 -278687428 + MIR SINE MIR 93 171 -91 245 211 56 44 chr1 3508566 3508656 -278685008 + L1P LINE L1 606 696 -5450 251 361 50 0 chr1 3508925 3509044 -278684620 - MIR3 SINE MIR -7 201 77 1253 152 13 5 chr1 3509054 3509278 -278684386 + L1MA8 LINE L1 5596 5821 -479 1151 147 0 6 chr1 3509278 3509455 -278684209 + AluJb SINE Alu 41 216 -96 2155 131 38 0 chr1 3509455 3509799 -278683865 - THE1B LTR MaLR -2 362 6 473 69 14 0 chr1 3509786 3509858 -278683806 - MLT2A2 LTR ERVL -380 73 1 * 338 228 0 25 chr1 3509863 3509942 -278683722 + AluSp/q SINE Alu 226 302 -1 2757 143 11 19 chr1 3509943 3510413 -278683251 + L1MA8 LINE L1 5814 6279 -12 323 238 12 12 chr1 3510498 3510582 -278683082 + MER96 DNA MER1_type? 1 84 -91 1035 99 0 14 chr1 3510804 3510945 -278682719 + AluSq/x SINE Alu 1 139 -174 407 123 0 0 chr1 3510950 3511007 -278682657 + FAM SINE Alu 116 172 -13 321 26 0 0 chr1 3511007 3511045 -278682619 + (TA)n Simple_repeat Simple_repeat 2 39 0 751 171 0 23 chr1 3511052 3511181 -278682483 + FLAM_C SINE Alu 2 127 -16 920 310 103 13 chr1 3511218 3511605 -278682059 - MLT1K LTR MaLR -128 460 39 204 297 109 64 chr1 3512477 3512679 -278680985 + MIR SINE MIR 52 262 0 208 31 0 0 chr1 3512966 3512998 -278680666 - L2 LINE L2 -213 3059 3028 244 300 44 0 chr1 3513503 3513593 -278680071 + MIR SINE MIR 88 181 -81 192 327 70 26 chr1 3514535 3514691 -278678973 + MIR3 SINE MIR 30 192 -16 2016 108 0 0 chr1 3514787 3515064 -278678600 - AluSg SINE Alu -16 294 18 713 246 29 6 chr1 3516233 3516408 -278677256 + MER91A DNA MER1_type 18 196 0 1833 199 162 16 chr1 3516439 3516926 -278676738 + MER74A LTR ERVL 1 558 0 252 283 88 9 chr1 3517151 3517264 -278676400 + MIR SINE MIR 28 149 -113 1704 201 117 47 chr1 3517329 3517781 -278675883 + MLT1D LTR MaLR 22 505 0 455 311 111 5 chr1 3517801 3517991 -278675673 + MIR SINE MIR 3 212 -50 5587 88 18 16 chr1 3518015 3518849 -278674815 - L1PA11 LINE L1 -4 6170 5335 197 256 100 22 chr1 3518980 3519070 -278674594 - MIR3 SINE MIR -48 160 64 225 313 60 0 chr1 3520710 3520793 -278672871 - L2 LINE L2 -28 3244 3157 227 284 74 0 chr1 3521219 3521300 -278672364 + MIR3 SINE MIR 114 200 -8 228 274 17 17 chr1 3522304 3522386 -278671278 + MIR SINE MIR 5 86 -122 664 111 47 23 chr1 3522909 3523080 -278670584 + CT-rich Low_complexity Low_complexity 2 176 0 195 129 0 0 chr1 3523077 3523108 -278670556 + (TTTTC)n Simple_repeat Simple_repeat 3 33 0 * 550 331 68 51 chr1 3523159 3523573 -278670091 - MLT1K LTR MaLR 0 588 168 262 359 0 0 chr1 3525804 3525907 -278667757 + (TCCA)n Simple_repeat Simple_repeat 3 105 0 1895 220 111 5 chr1 3526000 3526422 -278667242 - MLT1C LTR MaLR 0 467 1 763 208 138 103 chr1 3526928 3527240 -278666424 - MLT1J LTR MaLR -181 330 8 448 231 35 42 chr1 3528632 3528775 -278664889 - MER5A DNA MER1_type -28 161 20 2428 84 0 0 chr1 3529485 3529796 -278663868 - AluY SINE Alu 0 311 1 2029 125 3 10 chr1 3529830 3530143 -278663521 - AluSx SINE Alu -1 311 1 615 299 71 8 chr1 3530340 3530594 -278663070 + L1MD2 LINE L1 5737 6006 -353 2001 140 50 13 chr1 3530385 3530729 -278662935 + L1MB3 LINE L1 5792 6153 -30 2492 81 3 0 chr1 3530729 3531036 -278662628 + AluSp SINE Alu 1 308 -5 2001 140 50 13 chr1 3531036 3531069 -278662595 + L1MB3 LINE L1 6153 6183 0 1483 259 42 18 chr1 3531295 3531844 -278661820 - L1M4 LINE L1 -891 5255 4694 369 0 0 0 chr1 3531844 3531885 -278661779 + (TTCC)n Simple_repeat Simple_repeat 1 41 0 921 140 11 11 chr1 3531885 3532064 -278661600 + CT-rich Low_complexity Low_complexity 1 179 0 2168 126 17 0 chr1 3532074 3532375 -278661289 - AluSq SINE Alu -7 306 1 1120 171 0 0 chr1 3532433 3532609 -278661055 - AluSg/x SINE Alu -7 303 128 829 235 34 15 chr1 3532610 3532874 -278660790 - L1M4 LINE L1 -1504 4642 4374 596 171 0 0 chr1 3532879 3532984 -278660680 - L1MA9 LINE L1 -5 6307 6203 653 132 53 0 chr1 3532986 3533100 -278660564 + L1MA9 LINE L1 6096 6215 -97 * 2101 127 3 3 chr1 3533104 3533403 -278660261 - AluSq SINE Alu -14 299 1 1515 258 30 19 chr1 3533403 3533843 -278659821 - L1M4 LINE L1 -1759 4387 3936 1104 196 25 53 chr1 3533843 3534088 -278659576 - MER8 DNA MER2_type -1 238 1 1515 258 30 19 chr1 3534088 3534176 -278659488 - L1M4 LINE L1 -2210 3936 3850 232 192 0 19 chr1 3534247 3534299 -278659365 + MLT1E3 LTR MaLR 279 329 -295 208 379 93 6 chr1 3534881 3535042 -278658622 + MIR SINE MIR 56 230 -32 1019 74 0 0 chr1 3535573 3535694 -278657970 + AluSp SINE Alu 1 121 -192 1374 93 0 0 chr1 3535844 3536016 -278657648 + AluSp SINE Alu 132 303 -10 701 233 21 52 chr1 3536026 3536385 -278657279 - MLT1A1 LTR MaLR -42 323 1 8521 167 76 89 chr1 3536458 3537229 -278656435 - L1MC3 LINE L1 -7 7778 6998 338 97 0 81 chr1 3537229 3537291 -278656373 - Alu SINE Alu -4 298 242 8521 167 76 89 chr1 3537291 3537744 -278655920 - L1MC3 LINE L1 -787 6998 6540 577 25 25 0 chr1 3537744 3537823 -278655841 + (TCTA)n Simple_repeat Simple_repeat 2 82 0 8521 167 76 89 chr1 3537823 3538506 -278655158 - L1MC3 LINE L1 -1245 6540 5849 1454 151 9 22 chr1 3538506 3538738 -278654926 - AluJo SINE Alu -21 291 63 2323 121 0 0 chr1 3538746 3539052 -278654612 - AluSg SINE Alu -4 306 1 1831 156 7 14 chr1 3539054 3539342 -278654322 - AluJb SINE Alu -14 298 13 8521 167 76 89 chr1 3539342 3539742 -278653922 - L1MC3 LINE L1 -1944 5841 5428 198 236 0 0 chr1 3540436 3540491 -278653173 + (TG)n Simple_repeat Simple_repeat 1 55 0 269 264 0 0 chr1 3541082 3541135 -278652529 - L2 LINE L2 -5 3267 3215 699 213 101 43 chr1 3541967 3542174 -278651490 + MER20 DNA MER1_type 1 219 0 2018 82 32 3 chr1 3542320 3542602 -278651062 - L1PB1 LINE L1 -1 6150 5861 260 231 15 0 chr1 3542962 3543027 -278650637 - MLT1B LTR MaLR -6 384 319 649 229 246 7 chr1 3543029 3543309 -278650355 - MLT1B LTR MaLR -120 347 1 241 300 98 19 chr1 3544726 3544904 -278648760 - MIR SINE MIR -44 218 19 195 268 0 0 chr1 3544983 3545080 -278648584 + (CA)n Simple_repeat Simple_repeat 1 97 0 204 40 0 0 chr1 3545377 3545402 -278648262 + (TC)n Simple_repeat Simple_repeat 1 25 0 * 288 0 0 0 chr1 3545401 3545433 -278648231 + (CA)n Simple_repeat Simple_repeat 1 32 0 320 251 49 80 chr1 3547286 3547449 -278646215 - MLT1I LTR MaLR -165 244 87 277 226 0 0 chr1 3547436 3547498 -278646166 - MLT1I LTR MaLR -261 148 87 * 363 293 60 0 chr1 3547485 3547618 -278646046 - MLT1I LTR MaLR -261 148 8 247 244 114 41 chr1 3548999 3549122 -278644542 - L2 LINE L2 0 3272 3141 372 225 22 0 chr1 3549336 3549425 -278644239 - MER5A DNA MER1_type -83 106 16 304 153 17 0 chr1 3551292 3551351 -278642313 - L1ME4a LINE L1 0 6121 6062 522 288 83 10 chr1 3551676 3551881 -278641783 - MIR SINE MIR -10 252 33 2420 198 44 49 chr1 3552018 3552633 -278641031 + MLT1E1 LTR MaLR 43 654 0 280 303 91 91 chr1 3553555 3553829 -278639835 + L2 LINE L2 2968 3241 -31 384 280 0 28 chr1 3553979 3554086 -278639578 - MIR3 SINE MIR -52 156 53 399 273 99 12 chr1 3554270 3554431 -278639233 - MER96 DNA MER1_type? 0 175 1 978 155 5 5 chr1 3554518 3555093 -278638571 + (TCCA)n Simple_repeat Simple_repeat 1 755 0 204 40 0 0 chr1 3555140 3555165 -278638499 + (CCTA)n Simple_repeat Simple_repeat 2 26 0 188 292 0 0 chr1 3555276 3555324 -278638340 + L2 LINE L2 2921 2968 -345 454 221 43 80 chr1 3556106 3556269 -278637395 + L2 LINE L2 3156 3312 -1 653 271 133 28 chr1 3556457 3556675 -278636989 + MIR SINE MIR 16 256 -6 5159 256 55 37 chr1 3557622 3558845 -278634819 + L1MEc LINE L1 234 1433 -4963 2259 119 0 3 chr1 3558845 3559156 -278634508 + AluSx SINE Alu 1 310 -2 5159 256 55 37 chr1 3559156 3559193 -278634471 + L1MEc LINE L1 1433 1468 -4928 2107 146 7 0 chr1 3559193 3559502 -278634162 + AluJb SINE Alu 1 311 -1 5159 256 55 37 chr1 3559502 3560003 -278633661 + L1MEc LINE L1 1468 2038 -4358 2438 148 25 39 chr1 3560003 3560050 -278633614 - MSTA LTR MaLR 0 428 382 2254 95 0 10 chr1 3560050 3560344 -278633320 + AluSc SINE Alu 1 291 -18 2438 148 25 39 chr1 3560344 3560728 -278632936 - MSTA LTR MaLR -46 382 3 5159 256 55 37 chr1 3560728 3560933 -278632731 + L1MEc LINE L1 2038 2238 -4158 255 230 126 46 chr1 3561618 3561705 -278631959 + L2 LINE L2 3175 3268 -4 1647 226 19 14 chr1 3561769 3562132 -278631532 - MLT1A1 LTR MaLR 0 365 1 229 233 10 68 chr1 3563181 3563284 -278630380 - L1ME4a LINE L1 -50 6071 5975 207 200 25 0 chr1 3563752 3563792 -278629872 - MER5A DNA MER1_type -134 55 15 2223 107 3 0 chr1 3564094 3564385 -278629279 - AluSp SINE Alu -21 292 1 2499 99 8 8 chr1 3564466 3564820 -278628844 - THE1A LTR MaLR 0 355 2 365 288 42 17 chr1 3564899 3565017 -278628647 + MIR3 SINE MIR 13 133 -75 300 234 31 26 chr1 3565293 3565410 -278628254 - LTR41 LTR ERVL 0 795 658 284 275 62 25 chr1 3566610 3566770 -278626894 - LTR41 LTR ERVL -607 166 1 670 172 0 14 chr1 3566999 3567144 -278626520 + GA-rich Low_complexity Low_complexity 2 144 0 2220 154 12 51 chr1 3567415 3567825 -278625839 + MSTD LTR MaLR 1 394 -2 377 329 51 0 chr1 3568546 3568683 -278624981 + MIR SINE MIR 15 158 -104 584 285 57 0 chr1 3568691 3568884 -278624780 - MIR SINE MIR -51 211 8 320 251 68 25 chr1 3569482 3569645 -278624019 - MLT1I LTR MaLR -16 393 224 2235 195 24 9 chr1 3570070 3570527 -278623137 - MLT1C LTR MaLR 0 467 4 274 282 15 0 chr1 3570789 3570869 -278622795 + MIR SINE MIR 36 116 -92 209 277 46 0 chr1 3571723 3571788 -278621876 - MIR SINE MIR -97 165 98 217 104 62 21 chr1 3572046 3572094 -278621570 + T-rich Low_complexity Low_complexity 3 52 0 2288 166 41 37 chr1 3573212 3573709 -278619955 - L1MC4a LINE L1 -484 5671 5177 187 31 62 0 chr1 3573709 3573741 -278619923 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 6244 29 10 0 chr1 3573741 3574470 -278619194 - L1PA4 LINE L1 -16 6139 5404 2288 166 41 37 chr1 3574470 3574617 -278619047 - L1MC4a LINE L1 -755 5400 5255 234 91 0 0 chr1 3574669 3574702 -278618962 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 407 63 16 0 chr1 3575470 3575533 -278618131 + (TC)n Simple_repeat Simple_repeat 1 64 0 251 316 171 0 chr1 3576235 3576387 -278617277 + MIR SINE MIR 65 242 -20 498 315 118 5 chr1 3576535 3576738 -278616926 + MIR SINE MIR 32 257 -5 227 314 102 58 chr1 3577454 3577591 -278616073 - MIR SINE MIR -91 171 29 354 299 10 0 chr1 3578690 3578787 -278614877 - MIR SINE MIR -47 215 118 189 314 48 19 chr1 3578788 3578893 -278614771 + MIR SINE MIR 132 239 -23 277 289 0 31 chr1 3579198 3579295 -278614369 + L3 LINE CR1 583 676 -901 487 318 59 25 chr1 3579331 3579567 -278614097 - MIR SINE MIR -15 247 4 367 341 47 12 chr1 3579580 3579750 -278613914 + L3 LINE CR1 709 884 -693 927 230 15 0 chr1 3579978 3580182 -278613482 + MER58A DNA MER1_type 1 207 -17 183 314 0 43 chr1 3580607 3580677 -278612987 + L2 LINE L2 2294 2360 -954 1687 225 67 23 chr1 3580773 3581292 -278612372 - MER77 LTR ERV1 -10 595 54 184 279 73 15 chr1 3581330 3581398 -278612266 + L2 LINE L2 2907 2978 -335 207 313 12 0 chr1 3581806 3581889 -278611775 + L2 LINE L2 3202 3285 -28 2504 117 16 19 chr1 3582704 3583080 -278610584 - THE1C LTR MaLR 0 375 1 448 257 155 16 chr1 3584124 3584322 -278609342 - L1MC3 LINE L1 -10 7775 6096 1061 86 7 13 chr1 3585164 3585316 -278608348 - L1PA8 LINE L1 -3 6169 6019 23 54 0 0 chr1 3585334 3585371 -278608293 + AT_rich Low_complexity Low_complexity 1 37 0 487 160 191 0 chr1 3585382 3585513 -278608151 - Charlie5 DNA MER1_type -98 2514 2359 207 133 0 0 chr1 3585573 3585603 -278608061 + L2 LINE L2 3230 3259 -13 6879 61 14 2 chr1 3585716 3587054 -278606610 - L1PA7 LINE L1 -1 6153 4813 376 329 17 43 chr1 3587112 3587343 -278606321 + L1MD2 LINE L1 5535 5759 -2049 2084 129 99 40 chr1 3587343 3587702 -278605962 + MSTA LTR MaLR 1 388 -40 2089 108 47 0 chr1 3587702 3587998 -278605666 - AluSx SINE Alu -2 310 1 2084 129 99 40 chr1 3587998 3588042 -278605622 + MSTA LTR MaLR 388 428 0 443 261 0 0 chr1 3588549 3588572 -278605092 + L2 LINE L2 3198 3220 -93 2039 124 31 7 chr1 3588572 3588863 -278604801 - AluSx SINE Alu -14 298 1 443 261 0 0 chr1 3588863 3588931 -278604733 + L2 LINE L2 3219 3289 -24 188 235 0 0 chr1 3590351 3590385 -278603279 + L2 LINE L2 3165 3198 -74 1653 214 30 42 chr1 3590436 3590581 -278603083 - MLT1C LTR MaLR 0 467 322 3439 150 2 11 chr1 3590581 3591113 -278602551 + MER1A DNA MER1_type 1 527 0 1653 214 30 42 chr1 3591113 3591440 -278602224 - MLT1C LTR MaLR -145 322 1 238 388 10 0 chr1 3591617 3591715 -278601949 - MIR SINE MIR 0 262 164 220 269 93 46 chr1 3592495 3592603 -278601061 - L2 LINE L2 -1 3312 3200 307 263 34 34 chr1 3593976 3594094 -278599570 + L1MD2 LINE L1 6046 6163 -196 246 253 0 0 chr1 3594169 3594268 -278599396 + (CA)n Simple_repeat Simple_repeat 2 100 0 354 269 0 0 chr1 3594286 3594507 -278599157 + (CA)n Simple_repeat Simple_repeat 1 221 0 264 275 0 0 chr1 3594542 3594702 -278598962 + (CA)n Simple_repeat Simple_repeat 1 160 0 306 269 0 0 chr1 3594730 3594886 -278598778 + (CA)n Simple_repeat Simple_repeat 1 156 0 231 173 0 0 chr1 3594918 3594970 -278598694 + (CA)n Simple_repeat Simple_repeat 1 52 0 404 297 36 18 chr1 3594994 3595213 -278598451 + L1MD2 LINE L1 6132 6354 -5 28 71 0 0 chr1 3595273 3595329 -278598335 + AT_rich Low_complexity Low_complexity 1 56 0 22 0 0 0 chr1 3595399 3595421 -278598243 + AT_rich Low_complexity Low_complexity 1 22 0 2229 100 0 21 chr1 3596820 3597398 -278596266 - L1PA10 LINE L1 -595 5573 5011 4330 86 26 0 chr1 3597398 3597973 -278595691 + L1PA10 LINE L1 5558 6157 -11 197 397 44 7 chr1 3598051 3598187 -278595477 + L3 LINE CR1 1000 1140 -437 228 333 152 24 chr1 3598292 3598457 -278595207 + L3 LINE CR1 1335 1520 -57 519 306 16 0 chr1 3599896 3600017 -278593647 - L2 LINE L2 0 3313 3191 295 183 0 0 chr1 3600863 3600923 -278592741 - L1MA10 LINE L1 -7 6327 6268 1864 158 25 51 chr1 3600924 3601317 -278592347 + MLT1B LTR MaLR 8 390 0 3198 223 33 61 chr1 3601317 3602856 -278590808 - L1ME1 LINE L1 -97 6138 4664 2279 112 0 10 chr1 3602856 3603159 -278590505 - AluSx SINE Alu -12 300 1 3198 223 33 61 chr1 3603159 3603445 -278590219 - L1ME1 LINE L1 -1571 4664 4372 240 263 0 0 chr1 3603454 3603511 -278590153 - L1ME1 LINE L1 -1817 4398 4342 * 811 218 45 30 chr1 3603509 3603775 -278589889 - L1ME1 LINE L1 -2828 3387 3118 1239 279 79 22 chr1 3603780 3604274 -278589390 - L1ME1 LINE L1 -5754 642 121 597 143 50 99 chr1 3604301 3604462 -278589202 + MLT2B1 LTR ERVL 366 518 -2 230 308 0 0 chr1 3604469 3604534 -278589130 - L1ME1 LINE L1 -6295 101 37 186 43 0 0 chr1 3605709 3605732 -278587932 + (CA)n Simple_repeat Simple_repeat 2 24 0 367 326 116 6 chr1 3606031 3606203 -278587461 + L1ME4a LINE L1 5695 5885 -236 2015 96 0 0 chr1 3606831 3607080 -278586584 - AluSx SINE Alu -63 249 1 720 261 97 13 chr1 3608328 3608566 -278585098 + L2 LINE L2 2501 2758 -556 2745 145 11 11 chr1 3608606 3609082 -278584582 + MER31A LTR ERV1 2 477 -8 1233 238 80 28 chr1 3609078 3609478 -278584186 + MLT1C LTR MaLR 45 465 -2 * 325 357 36 11 chr1 3609480 3609805 -278583859 + L2 LINE L2 2752 3082 -231 200 321 160 11 chr1 3611666 3611853 -278581811 + L2 LINE L2 2285 2499 -815 2271 129 0 0 chr1 3613716 3614027 -278579637 - AluSx SINE Alu -1 311 1 3237 191 34 26 chr1 3614739 3615195 -278578469 + L1MB7 LINE L1 5442 5908 -276 2223 206 15 23 chr1 3615195 3615666 -278577998 - MLT1C LTR MaLR 0 467 1 3237 191 34 26 chr1 3615666 3615936 -278577728 + L1MB7 LINE L1 5908 6174 -10 2141 243 42 41 chr1 3617234 3618133 -278575531 + L1ME LINE L1 2472 3371 -2775 824 236 49 12 chr1 3618146 3618160 -278575504 + L1ME LINE L1 5263 5275 -891 2158 136 0 0 chr1 3618160 3618455 -278575209 - AluSx SINE Alu -17 295 1 824 236 49 12 chr1 3618455 3618686 -278574978 + L1ME LINE L1 5275 5517 -649 702 90 0 10 chr1 3618720 3618820 -278574844 - L1PA5 LINE L1 -8 6146 6048 2279 241 76 17 chr1 3618821 3619152 -278574512 + L1MEc LINE L1 2020 2330 -3885 225 0 0 0 chr1 3619152 3619177 -278574487 + (TG)n Simple_repeat Simple_repeat 2 26 0 2279 241 76 17 chr1 3619177 3619883 -278573781 + L1MEc LINE L1 2330 3063 -3152 414 30 0 30 chr1 3620687 3620754 -278572910 + AluSp/q SINE Alu 243 307 -6 1609 261 35 23 chr1 3621013 3621542 -278572122 - L1M4 LINE L1 -891 5255 4734 735 62 0 0 chr1 3621542 3621639 -278572025 + (TTCC)n Simple_repeat Simple_repeat 1 97 0 1088 79 22 11 chr1 3621639 3621817 -278571847 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2163 130 17 0 chr1 3621827 3622128 -278571536 - AluSq SINE Alu -7 306 1 1609 261 35 23 chr1 3622128 3622187 -278571477 - L1M4 LINE L1 -1420 4726 4648 1145 165 0 0 chr1 3622187 3622363 -278571301 - AluSg/x SINE Alu -7 305 130 837 231 34 15 chr1 3622364 3622628 -278571036 - L1M4 LINE L1 -1504 4642 4374 596 171 0 0 chr1 3622633 3622738 -278570926 - L1MA9 LINE L1 -5 6307 6203 653 132 53 0 chr1 3622740 3622854 -278570810 + L1MA9 LINE L1 6096 6215 -97 * 2110 127 3 3 chr1 3622858 3623158 -278570506 - AluSq SINE Alu -13 300 1 1515 258 30 19 chr1 3623158 3623598 -278570066 - L1M4 LINE L1 -1759 4387 3936 1104 196 25 53 chr1 3623598 3623843 -278569821 - MER8 DNA MER2_type -1 238 1 1515 258 30 19 chr1 3623843 3623931 -278569733 - L1M4 LINE L1 -2210 3936 3850 232 192 0 19 chr1 3624002 3624054 -278569610 + MLT1E3 LTR MaLR 279 329 -295 208 379 93 6 chr1 3624636 3624797 -278568867 + MIR SINE MIR 56 230 -32 1019 74 0 0 chr1 3625328 3625449 -278568215 + AluSp SINE Alu 1 121 -192 1382 92 0 0 chr1 3625599 3625772 -278567892 + AluSp SINE Alu 132 304 -9 701 233 21 52 chr1 3625782 3626141 -278567523 - MLT1A1 LTR MaLR -42 323 1 8551 167 76 88 chr1 3626214 3626985 -278566679 - L1MC3 LINE L1 -7 7778 7000 338 97 0 81 chr1 3626985 3627047 -278566617 - Alu SINE Alu -4 298 242 8551 167 76 88 chr1 3627047 3627500 -278566164 - L1MC3 LINE L1 -785 7000 6543 505 28 28 0 chr1 3627500 3627571 -278566093 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 8551 167 76 88 chr1 3627571 3628254 -278565410 - L1MC3 LINE L1 -1242 6543 5854 1454 151 9 22 chr1 3628254 3628486 -278565178 - AluJo SINE Alu -21 291 63 2281 123 3 0 chr1 3628489 3628798 -278564866 - AluSg SINE Alu 0 310 1 1831 156 7 14 chr1 3628800 3629088 -278564576 - AluJb SINE Alu -14 298 13 8551 167 76 88 chr1 3629088 3629488 -278564176 - L1MC3 LINE L1 -1934 5851 5428 198 236 0 0 chr1 3630182 3630237 -278563427 + (TG)n Simple_repeat Simple_repeat 1 55 0 269 264 0 0 chr1 3630828 3630881 -278562783 - L2 LINE L2 -5 3267 3215 699 213 101 43 chr1 3631713 3631920 -278561744 + MER20 DNA MER1_type 1 219 0 2018 82 32 3 chr1 3632066 3632348 -278561316 - L1PB1 LINE L1 -1 6150 5861 260 231 15 0 chr1 3632707 3632772 -278560892 - MLT1B LTR MaLR -6 384 319 626 232 246 7 chr1 3632774 3633054 -278560610 - MLT1B LTR MaLR -120 347 1 259 292 98 19 chr1 3634471 3634649 -278559015 - MIR SINE MIR -44 218 19 195 268 0 0 chr1 3634728 3634825 -278558839 + (CA)n Simple_repeat Simple_repeat 1 97 0 198 0 0 0 chr1 3635122 3635144 -278558520 + (TC)n Simple_repeat Simple_repeat 2 23 0 315 0 0 0 chr1 3635145 3635180 -278558484 + (CA)n Simple_repeat Simple_repeat 2 36 0 320 251 49 80 chr1 3637033 3637196 -278556468 - MLT1I LTR MaLR -165 244 87 277 226 0 0 chr1 3637183 3637245 -278556419 - MLT1I LTR MaLR -261 148 87 * 363 293 60 0 chr1 3637232 3637365 -278556299 - MLT1I LTR MaLR -261 148 8 247 244 114 41 chr1 3638746 3638869 -278554795 - L2 LINE L2 0 3272 3141 372 225 22 0 chr1 3639083 3639172 -278554492 - MER5A DNA MER1_type -83 106 16 304 153 17 0 chr1 3641039 3641098 -278552566 - L1ME4a LINE L1 0 6121 6062 505 293 83 10 chr1 3641423 3641628 -278552036 - MIR SINE MIR -10 252 33 2387 202 44 49 chr1 3641765 3642380 -278551284 + MLT1E1 LTR MaLR 43 654 0 280 303 91 91 chr1 3643302 3643576 -278550088 + L2 LINE L2 2968 3241 -31 384 280 0 28 chr1 3643726 3643833 -278549831 - MIR3 SINE MIR -52 156 53 374 284 93 12 chr1 3644017 3644179 -278549485 - MER96 DNA MER1_type? 0 175 1 999 152 5 5 chr1 3644266 3644841 -278548823 + (TCCA)n Simple_repeat Simple_repeat 1 755 0 204 40 0 0 chr1 3644888 3644913 -278548751 + (CCTA)n Simple_repeat Simple_repeat 2 26 0 188 292 0 0 chr1 3645024 3645072 -278548592 + L2 LINE L2 2921 2968 -345 454 221 43 80 chr1 3645854 3646017 -278547647 + L2 LINE L2 3156 3312 -1 653 271 133 28 chr1 3646205 3646423 -278547241 + MIR SINE MIR 16 256 -6 5048 254 55 46 chr1 3647370 3648593 -278545071 + L1MEc LINE L1 234 1444 -4952 2255 122 0 3 chr1 3648593 3648905 -278544759 + AluSx SINE Alu 1 311 -1 5048 254 55 46 chr1 3648905 3648942 -278544722 + L1MEc LINE L1 1444 1479 -4917 2178 136 7 0 chr1 3648942 3649252 -278544412 + AluJb SINE Alu 1 312 0 5048 254 55 46 chr1 3649252 3649771 -278543893 + L1MEc LINE L1 1479 2036 -4360 2438 148 25 39 chr1 3649771 3649818 -278543846 - MSTA LTR MaLR 0 428 382 2292 92 0 10 chr1 3649818 3650113 -278543551 + AluSc SINE Alu 1 292 -17 2438 148 25 39 chr1 3650113 3650497 -278543167 - MSTA LTR MaLR -46 382 3 5048 254 55 46 chr1 3650497 3650702 -278542962 + L1MEc LINE L1 2036 2238 -4158 255 230 126 46 chr1 3651387 3651474 -278542190 + L2 LINE L2 3175 3268 -4 1647 226 19 14 chr1 3651538 3651901 -278541763 - MLT1A1 LTR MaLR 0 365 1 229 233 10 68 chr1 3652950 3653053 -278540611 - L1ME4a LINE L1 -50 6071 5975 207 200 25 0 chr1 3653521 3653561 -278540103 - MER5A DNA MER1_type -134 55 15 2200 110 3 0 chr1 3653863 3654154 -278539510 - AluSp SINE Alu -21 292 1 2529 93 8 8 chr1 3654234 3654588 -278539076 - THE1A LTR MaLR 0 355 2 378 294 34 17 chr1 3654667 3654786 -278538878 + MIR3 SINE MIR 13 133 -75 300 234 31 26 chr1 3655062 3655179 -278538485 - LTR41 LTR ERVL 0 795 658 284 275 62 25 chr1 3656313 3656473 -278537191 - LTR41 LTR ERVL -607 166 1 2368 113 0 0 chr1 3656632 3656934 -278536730 - AluSx SINE Alu -10 302 1 497 263 65 50 chr1 3656958 3657160 -278536504 + MLT1I LTR MaLR 128 337 -72 2117 122 0 39 chr1 3657160 3657472 -278536192 + AluY SINE Alu 1 300 -11 497 263 65 50 chr1 3657472 3657547 -278536117 + MLT1I LTR MaLR 337 409 0 528 249 61 36 chr1 3657547 3657712 -278535952 - MIR SINE MIR -67 195 27 213 236 125 0 chr1 3658047 3658119 -278535545 - L2 LINE L2 -3 3269 3189 415 280 143 6 chr1 3659155 3659330 -278534334 + MIR SINE MIR 48 246 -16 1618 268 36 4 chr1 3661636 3662189 -278531475 + L1ME2 LINE L1 3063 3633 -2513 618 245 108 51 chr1 3662189 3662503 -278531161 + L1ME2 LINE L1 4715 5046 -1100 931 210 11 0 chr1 3662526 3662712 -278530952 + MER3 DNA MER1_type 22 209 0 2375 238 71 7 chr1 3662712 3663672 -278529992 + L1ME2 LINE L1 5036 6060 -104 2325 158 40 37 chr1 3663791 3664221 -278529443 + Tigger2a DNA MER2_type 3 433 -1 282 217 22 3 chr1 3664221 3664307 -278529357 + L1ME2 LINE L1 6075 6163 -1 2127 113 3 0 chr1 3664342 3664661 -278529003 + AluSx SINE Alu 1 320 0 33 43 0 0 chr1 3664849 3664896 -278528768 + AT_rich Low_complexity Low_complexity 1 47 0 598 281 52 60 chr1 3665099 3665566 -278528098 + L1MC5 LINE L1 6481 6984 -824 592 89 0 40 chr1 3665608 3665732 -278527932 + (GA)n Simple_repeat Simple_repeat 1 119 0 373 336 74 41 chr1 3665732 3666071 -278527593 + L1MEd LINE L1 841 1190 -4929 795 92 0 49 chr1 3666098 3666283 -278527381 + (GA)n Simple_repeat Simple_repeat 1 176 0 189 135 10 67 chr1 3666284 3666388 -278527276 + GA-rich Low_complexity Low_complexity 1 98 0 688 95 0 58 chr1 3666391 3666580 -278527084 + (GA)n Simple_repeat Simple_repeat 1 178 0 334 300 105 25 chr1 3666588 3666820 -278526844 + L1MEd LINE L1 974 1181 -4938 288 235 133 15 chr1 3666868 3667064 -278526600 + L1MC5 LINE L1 7003 7221 -740 366 258 0 11 chr1 3667064 3667153 -278526511 - MIR SINE MIR -138 124 37 2314 105 55 22 chr1 3667170 3667533 -278526131 + THE1C LTR MaLR 1 375 0 256 148 0 49 chr1 3667685 3667746 -278525918 + L1MC5 LINE L1 7856 7913 -48 275 343 0 12 chr1 3668185 3668357 -278525307 + (CACCC)n Simple_repeat Simple_repeat 3 172 0 234 91 0 0 chr1 3669129 3669162 -278524502 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 2635 30 0 3 chr1 3669900 3670196 -278523468 + AluY SINE Alu 6 300 -11 673 258 104 69 chr1 3670913 3671433 -278522231 + MER115 DNA AcHobo 107 692 -1 1080 239 90 35 chr1 3672763 3673131 -278520533 + MLT1B LTR MaLR 1 388 -2 2297 91 3 13 chr1 3673652 3673960 -278519704 - AluY SINE Alu -6 305 1 1201 227 103 53 chr1 3674320 3674678 -278518986 - MLT1D LTR MaLR -8 497 112 1497 128 0 68 chr1 3674678 3674913 -278518751 - AluJb SINE Alu -9 303 85 1201 227 103 53 chr1 3674913 3674990 -278518674 - MLT1D LTR MaLR -393 112 40 379 283 142 19 chr1 3675251 3675456 -278518208 + MIR SINE MIR 21 250 -12 1916 180 43 53 chr1 3677237 3677345 -278516319 - MLT1D LTR MaLR 0 505 397 2351 112 7 0 chr1 3677345 3677650 -278516014 + AluSq SINE Alu 1 307 -6 1916 180 43 53 chr1 3677650 3678031 -278515633 - MLT1D LTR MaLR -108 397 21 402 115 0 0 chr1 3678074 3678135 -278515529 + (TG)n Simple_repeat Simple_repeat 2 62 0 433 303 26 41 chr1 3678167 3678362 -278515302 - MIR SINE MIR -58 204 13 2345 110 3 3 chr1 3678409 3678717 -278514947 + AluSx SINE Alu 1 308 -4 11357 173 42 22 chr1 3678963 3681573 -278512091 - L1 LINE L1 -1132 5014 2353 1403 184 42 84 chr1 3682710 3683091 -278510573 - MLT1A1 LTR MaLR 0 365 1 360 293 202 16 chr1 3683261 3683514 -278510150 + L2 LINE L2 2135 2434 -880 368 351 189 7 chr1 3683790 3684235 -278509429 + L2 LINE L2 2389 2914 -400 241 258 67 22 chr1 3684215 3684304 -278509360 + L2 LINE L2 3180 3272 0 * 2088 121 10 0 chr1 3684980 3685277 -278508387 + AluSx SINE Alu 1 300 -12 2238 127 116 10 chr1 3685309 3685696 -278507968 + MSTA LTR MaLR 1 428 0 2397 93 3 10 chr1 3686017 3686328 -278507336 - AluSc SINE Alu 0 309 1 362 238 67 19 chr1 3686707 3686812 -278506852 - MLT1J LTR MaLR -293 218 109 1749 172 19 94 chr1 3687098 3687522 -278506142 - MSTD LTR MaLR -4 392 1 207 0 0 0 chr1 3687704 3687727 -278505937 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 871 269 46 48 chr1 3688291 3688708 -278504956 - MLT1C LTR MaLR 0 467 52 297 219 0 0 chr1 3688957 3689030 -278504634 + (CA)n Simple_repeat Simple_repeat 1 73 0 384 287 169 30 chr1 3689430 3689796 -278503868 + HERVL LTR ERVL 1724 2140 -3514 703 278 47 0 chr1 3690087 3690256 -278503408 - MIR SINE MIR -53 209 33 1315 110 33 49 chr1 3690289 3690534 -278503130 + THE1C LTR MaLR 1 241 -134 504 48 0 0 chr1 3690534 3690597 -278503067 + THE1A LTR MaLR 1 63 -292 1887 82 59 0 chr1 3690855 3691125 -278502539 + THE1A LTR MaLR 70 355 0 995 101 2 0 chr1 3691125 3691270 -278502394 + THE1C LTR MaLR 237 375 0 272 238 0 10 chr1 3691639 3691740 -278501924 + GA-rich Low_complexity Low_complexity 1 100 0 448 186 4 18 chr1 3691759 3691980 -278501684 + GA-rich Low_complexity Low_complexity 1 218 0 318 143 0 0 chr1 3691987 3692050 -278501614 + (CA)n Simple_repeat Simple_repeat 2 64 0 2862 160 4 8 chr1 3692111 3692606 -278501058 + THE1-int LTR MaLR 891 1383 -197 439 218 224 36 chr1 3693455 3693622 -278500042 - MIR SINE MIR -63 145 4 621 322 108 43 chr1 3694729 3695512 -278498152 - L2 LINE L2 -2 3311 2580 4077 201 21 61 chr1 3695512 3696522 -278497142 + LTR5 LTR ERVK 1 969 0 621 322 108 43 chr1 3696522 3696540 -278497124 - L2 LINE L2 -733 2580 2565 2324 110 7 0 chr1 3696540 3696850 -278496814 + AluSx SINE Alu 1 312 0 621 322 108 43 chr1 3696850 3697000 -278496664 - L2 LINE L2 -748 2565 2300 2509 113 108 5 chr1 3697236 3697624 -278496040 - MSTA LTR MaLR 0 428 1 738 257 153 48 chr1 3697839 3698565 -278495099 - LTR1 LTR ERV1 0 826 28 347 291 35 57 chr1 3699204 3699345 -278494319 - L1ME4a LINE L1 0 6121 5984 1124 280 118 50 chr1 3699427 3700544 -278493120 + L1ME LINE L1 3337 4529 -1617 395 312 14 7 chr1 3700975 3701116 -278492548 + L1P5 LINE L1 5315 5456 -698 451 243 117 41 chr1 3701530 3701833 -278491831 + L1ME LINE L1 5483 5802 -360 2446 133 53 2 chr1 3701867 3702266 -278491398 - MSTA LTR MaLR 0 428 10 25 31 0 0 chr1 3702491 3702523 -278491141 + AT_rich Low_complexity Low_complexity 1 32 0 310 263 127 36 chr1 3703415 3703621 -278490043 - MIR SINE MIR -4 258 21 497 322 28 6 chr1 3703718 3703895 -278489769 + MIR SINE MIR 23 203 -59 420 330 35 20 chr1 3703969 3704172 -278489492 + MIR SINE MIR 20 225 -37 254 232 11 53 chr1 3705143 3705238 -278488426 + MIR SINE MIR 40 130 -132 426 219 36 36 chr1 3706580 3706734 -278486930 - L1ME2 LINE L1 -3 6232 6076 827 105 0 0 chr1 3706734 3706848 -278486816 - AluSg/x SINE Alu 0 309 196 6198 171 20 9 chr1 3706848 3708030 -278485634 + MSTA-int LTR MaLR 443 1651 0 2425 145 57 5 chr1 3708030 3708234 -278485430 + MSTA LTR MaLR 1 193 -235 243 0 0 0 chr1 3708234 3708261 -278485403 + (CCA)n Simple_repeat Simple_repeat 1 27 0 2425 145 57 5 chr1 3708261 3708463 -278485201 + MSTA LTR MaLR 193 428 0 2080 211 37 8 chr1 3708463 3708919 -278484745 - MER54A LTR ERVL -204 697 25 1710 215 78 82 chr1 3708941 3709706 -278483958 - L1ME2 LINE L1 -201 6030 5272 1965 256 28 50 chr1 3709708 3710353 -278483311 + L1ME1 LINE L1 5531 6161 -5 576 223 27 0 chr1 3710375 3710523 -278483141 - L1ME2 LINE L1 -1720 4495 4344 443 301 43 11 chr1 3710518 3710704 -278482960 - L1ME2 LINE L1 -4451 1945 1754 * 1403 277 133 63 chr1 3710720 3712057 -278481607 - L1ME2 LINE L1 -4740 1656 199 2547 57 6 25 chr1 3712057 3712374 -278481290 + AluY SINE Alu 1 311 0 1403 277 133 63 chr1 3712374 3712550 -278481114 - L1ME2 LINE L1 -6197 199 37 314 250 143 57 chr1 3712551 3712731 -278480933 + MIR SINE MIR 42 231 -31 247 308 56 28 chr1 3713015 3713122 -278480542 + L2 LINE L2 3196 3305 -8 938 206 58 84 chr1 3714391 3714468 -278479196 + MLT1D LTR MaLR 1 78 -427 2795 183 14 19 chr1 3714468 3714983 -278478681 + MLT2B2 LTR ERVL 1 512 -3 938 206 58 84 chr1 3714983 3715250 -278478414 + MLT1D LTR MaLR 78 336 -169 812 211 70 6 chr1 3715436 3715607 -278478057 + MLT1D LTR MaLR 324 505 0 2219 122 22 35 chr1 3716058 3716427 -278477237 + THE1B LTR MaLR 1 364 0 1115 156 0 0 chr1 3716518 3716698 -278476966 - L1MA1 LINE L1 0 6302 6123 224 288 12 6 chr1 3718042 3718161 -278475503 + MIR SINE MIR 110 229 -33 279 288 23 13 chr1 3718586 3718716 -278474948 - MIR SINE MIR -76 132 37 5864 186 29 20 chr1 3718858 3720302 -278473362 - L1MB3 LINE L1 -218 6201 4771 16463 141 23 16 chr1 3720302 3723002 -278470662 - Tigger2 DNA MER2_type 0 2718 1 5864 186 29 20 chr1 3723002 3725567 -278468097 - L1MB3 LINE L1 -1648 4771 994 2404 54 40 78 chr1 3725567 3725940 -278467724 - L1PA6 LINE L1 0 6154 5796 5864 186 29 20 chr1 3725940 3726941 -278466723 - L1MB3 LINE L1 -5425 994 3 6954 132 21 5 chr1 3727014 3728844 -278464820 - L1MA5 LINE L1 0 6300 4436 * 7928 191 12 4 chr1 3728827 3730427 -278463237 + L1 LINE L1 2235 3847 -2299 25 0 0 0 chr1 3730742 3730767 -278462897 + AT_rich Low_complexity Low_complexity 1 25 0 4213 123 41 8 chr1 3730794 3730938 -278462726 - L1MA6 LINE L1 0 6300 6162 2276 177 16 61 chr1 3730938 3731209 -278462455 + MER66B LTR ERV1 1 240 -246 1987 153 3 3 chr1 3731209 3731510 -278462154 + AluJb SINE Alu 9 309 -3 2276 177 16 61 chr1 3731510 3731747 -278461917 + MER66B LTR ERV1 240 486 0 4213 123 41 8 chr1 3731747 3732267 -278461397 - L1MA6 LINE L1 -138 6162 5614 200 162 0 0 chr1 3732584 3732621 -278461043 + L2 LINE L2 2941 2977 -336 314 224 61 41 chr1 3732796 3732894 -278460770 + L2 LINE L2 3211 3310 -3 1653 196 26 53 chr1 3733288 3733665 -278459999 - MLT1A2 LTR MaLR -7 367 1 408 263 99 29 chr1 3733673 3733844 -278459820 - MIR SINE MIR -48 214 32 1206 255 195 21 chr1 3734483 3735145 -278458519 + L2 LINE L2 1 777 -2537 578 260 143 11 chr1 3735199 3735599 -278458065 + MLT1F1 LTR MaLR 75 559 -8 324 182 0 15 chr1 3735611 3735677 -278457987 + MLT1F1-int LTR MaLR 5 69 -1302 201 227 171 0 chr1 3735680 3735768 -278457896 + L2 LINE L2 1255 1357 -1957 4188 101 3 0 chr1 3735925 3736499 -278457165 + LTR24B LTR ERV1 1 576 0 1220 281 85 47 chr1 3736837 3737332 -278456332 + MLT1G1 LTR MaLR 81 594 -1 2437 274 152 20 chr1 3737334 3738687 -278454977 + L2 LINE L2 773 2304 -1010 340 323 19 19 chr1 3738707 3738865 -278454799 + MER97c DNA MER1_type? 1 158 -932 2482 163 24 5 chr1 3738893 3739311 -278454353 - MSTA LTR MaLR 0 428 3 8571 155 65 37 chr1 3739313 3740919 -278452745 - MSTA-int LTR MaLR 0 1651 1 2861 119 24 5 chr1 3740919 3741339 -278452325 - MSTA LTR MaLR 0 428 1 463 312 183 10 chr1 3741345 3741842 -278451822 + L2 LINE L2 2360 2942 -372 251 308 47 47 chr1 3742304 3742476 -278451188 - MIR3 SINE MIR -15 193 22 213 207 138 35 chr1 3742738 3742825 -278450839 + L2 LINE L2 3177 3272 0 437 257 90 66 chr1 3744409 3744744 -278448920 - L1ME4a LINE L1 -1 6120 5778 192 248 124 29 chr1 3745123 3745228 -278448436 + MIR SINE MIR 29 143 -119 359 296 47 69 chr1 3745575 3745808 -278447856 - MLT1L LTR MaLR -33 582 355 2312 113 0 0 chr1 3746534 3746834 -278446830 - AluSg SINE Alu -9 301 2 276 261 8 75 chr1 3746912 3747046 -278446618 + MIR SINE MIR 10 134 -74 2156 132 0 3 chr1 3748041 3748352 -278445312 + AluSg SINE Alu 1 310 0 1517 176 13 33 chr1 3748792 3749056 -278444608 + MLT1B LTR MaLR 7 275 -115 2828 93 0 3 chr1 3749056 3749421 -278444243 + THE1B LTR MaLR 1 364 0 10656 102 25 40 chr1 3749421 3751026 -278442638 + THE1B-int LTR MaLR 1 1580 0 2670 113 3 3 chr1 3751026 3751390 -278442274 + THE1B LTR MaLR 1 364 0 1517 176 13 33 chr1 3751390 3751425 -278442239 + MLT1B LTR MaLR 272 302 -88 2369 146 54 10 chr1 3751473 3751878 -278441786 - MER83 LTR ERV1 -25 423 1 414 212 12 0 chr1 3751883 3751968 -278441696 + MLT1B LTR MaLR 305 390 0 1351 153 63 4 chr1 3752430 3752685 -278440979 - L1MA7 LINE L1 -1 6290 6021 548 278 9 52 chr1 3752743 3752973 -278440691 - L1MC5 LINE L1 -100 7861 7642 248 313 143 7 chr1 3753324 3753471 -278440193 - MER5B DNA MER1_type -6 172 6 441 0 0 0 chr1 3753529 3753578 -278440086 + (TG)n Simple_repeat Simple_repeat 2 50 0 505 309 98 5 chr1 3753815 3754009 -278439655 - MIR SINE MIR -4 258 47 2186 163 66 12 chr1 3754626 3755036 -278438628 + MSTB1 LTR MaLR 1 432 0 222 288 178 0 chr1 3755542 3755660 -278438004 - L2 LINE L2 0 3313 3175 198 286 163 32 chr1 3755786 3756038 -278437626 - L2 LINE L2 -558 2756 2472 241 254 18 0 chr1 3756877 3756932 -278436732 - LTR16B LTR ERVL 0 464 409 2251 211 33 21 chr1 3756974 3757485 -278436179 - MLT1E2 LTR MaLR -109 517 1 213 244 0 0 chr1 3757518 3757563 -278436101 - L2 LINE L2 -2 3311 3267 195 222 0 0 chr1 3757859 3757895 -278435769 - L3b LINE CR1 -17 1566 1531 282 179 0 0 chr1 3758424 3758480 -278435184 + CT-rich Low_complexity Low_complexity 1 56 0 321 312 263 0 chr1 3759317 3759522 -278434142 + MIR SINE MIR 3 261 -1 403 247 103 7 chr1 3760849 3760995 -278432669 - MER5A DNA MER1_type -29 160 1 526 250 60 24 chr1 3761006 3761174 -278432490 - MER5B DNA MER1_type -3 175 2 2006 197 50 10 chr1 3761617 3761849 -278431815 - MSTB LTR MaLR 0 426 170 1702 146 3 52 chr1 3761849 3762158 -278431506 - AluJb SINE Alu -18 294 1 2006 197 50 10 chr1 3762158 3762321 -278431343 - MSTB LTR MaLR -256 170 15 24 0 0 0 chr1 3764303 3764327 -278429337 + AT_rich Low_complexity Low_complexity 1 24 0 323 241 69 0 chr1 3764667 3764754 -278428910 - MLT1I LTR MaLR -2 407 315 849 221 10 28 chr1 3764795 3765105 -278428559 - MLT1A1 LTR MaLR 0 365 1 363 307 117 7 chr1 3765162 3765299 -278428365 - MLT1I LTR MaLR -191 218 67 2283 188 94 4 chr1 3766077 3766589 -278427075 - MER74A LTR ERVL 0 558 1 363 339 78 17 chr1 3767880 3768060 -278425604 - MIR SINE MIR -67 195 5 419 297 26 0 chr1 3769117 3769272 -278424392 + (TAGA)n Simple_repeat Simple_repeat 4 162 0 699 225 0 0 chr1 3769302 3769471 -278424193 + (CA)n Simple_repeat Simple_repeat 1 169 0 2435 60 0 3 chr1 3769568 3769869 -278423795 - AluY SINE Alu -11 300 1 430 263 20 0 chr1 3770118 3770217 -278423447 + L2 LINE L2 3212 3312 -1 965 26 52 26 chr1 3770346 3770693 -278422971 + (TCTA)n Simple_repeat Simple_repeat 1 356 0 802 105 47 0 chr1 3770721 3770893 -278422771 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 375 367 6 6 chr1 3772039 3772216 -278421448 + (CA)n Simple_repeat Simple_repeat 1 177 0 1313 232 150 30 chr1 3772987 3773427 -278420237 + MLT1D LTR MaLR 13 505 0 2126 101 7 3 chr1 3777484 3777792 -278415872 - AluY SINE Alu -2 309 1 377 287 73 15 chr1 3777905 3778041 -278415623 + MER103 DNA DNA 2 145 -21 293 247 56 84 chr1 3778089 3778267 -278415397 + MER3 DNA MER1_type 32 204 -5 * 891 215 56 10 chr1 3778113 3778308 -278415356 - MER3 DNA MER1_type -5 204 1 389 299 52 61 chr1 3778453 3778684 -278414980 - MIR SINE MIR -3 259 31 356 276 26 9 chr1 3778737 3778853 -278414811 + MARNA DNA Mariner 311 428 -158 279 104 0 0 chr1 3779374 3779422 -278414242 + (TG)n Simple_repeat Simple_repeat 1 48 0 451 244 71 16 chr1 3779614 3779741 -278413923 + MER45B DNA AcHobo 4 137 -903 5179 106 3 4 chr1 3779741 3780518 -278413146 - L1PA13 LINE L1 -20 6143 5368 3453 213 44 7 chr1 3780518 3781273 -278412391 + MER45B DNA AcHobo 102 884 -156 276 203 0 0 chr1 3781321 3781380 -278412284 - MER45 DNA AcHobo -111 1470 1412 234 136 0 0 chr1 3781683 3781727 -278411937 + (TATG)n Simple_repeat Simple_repeat 3 46 0 676 145 22 17 chr1 3781734 3781913 -278411751 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 517 194 29 0 chr1 3781935 3782110 -278411554 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 525 262 0 21 chr1 3782131 3782272 -278411392 - L2 LINE L2 -14 3299 3162 284 238 38 86 chr1 3785414 3785519 -278408145 - MIR SINE MIR -157 105 6 299 371 74 25 chr1 3785546 3785829 -278407835 + L2 LINE L2 2976 3272 0 989 237 108 12 chr1 3786819 3787118 -278406546 + MLT1C LTR MaLR 6 355 -150 1965 122 91 28 chr1 3787126 3787478 -278406186 - THE1C LTR MaLR -1 374 1 503 242 53 52 chr1 3788274 3788580 -278405084 - MLT1H LTR MaLR -27 382 82 448 285 33 26 chr1 3789063 3789214 -278404450 + MIR SINE MIR 14 165 -97 242 279 99 36 chr1 3789576 3789687 -278403977 - MIR SINE MIR -73 135 18 215 308 205 8 chr1 3790398 3790515 -278403149 + MIR SINE MIR 42 181 -81 198 300 14 0 chr1 3790536 3790606 -278403058 + MIR SINE MIR 21 91 -171 210 37 0 0 chr1 3790978 3791005 -278402659 + (CAG)n Simple_repeat Simple_repeat 3 29 0 745 185 58 24 chr1 3791095 3791300 -278402364 - ORSL DNA AcHobo -20 255 44 254 198 26 129 chr1 3792651 3792767 -278400897 + L3 LINE CR1 1470 1573 -4 1428 209 102 40 chr1 3794384 3794805 -278398859 - MLT1C LTR MaLR 0 467 21 1926 81 0 0 chr1 3995503 3995751 -278197913 + AluY SINE Alu 63 310 -1 1487 178 33 49 chr1 3996572 3996600 -278197064 - AluJo SINE Alu -13 299 272 2146 105 3 7 chr1 3996600 3996904 -278196760 + AluSq SINE Alu 1 303 -10 1487 178 33 49 chr1 3996904 3997179 -278196485 - AluJo SINE Alu -40 272 1 594 283 88 26 chr1 3998562 3998788 -278194876 + MIR SINE MIR 2 241 -21 727 204 18 12 chr1 3999175 3999342 -278194322 - Charlie8 DNA MER1_type -2227 190 23 1721 154 0 11 chr1 4000217 4000502 -278193162 + AluJb SINE Alu 11 292 -20 21 0 0 0 chr1 4000502 4000523 -278193141 + AT_rich Low_complexity Low_complexity 1 21 0 264 252 96 96 chr1 4001710 4001845 -278191819 + L2 LINE L2 3134 3268 -4 393 296 69 20 chr1 4002220 4002467 -278191197 + L1ME3A LINE L1 5912 6170 0 41 36 0 0 chr1 4002997 4003052 -278190612 + GC_rich Low_complexity Low_complexity 1 55 0 21 82 0 0 chr1 4003071 4003120 -278190544 + GC_rich Low_complexity Low_complexity 1 49 0 265 255 40 13 chr1 4004144 4004239 -278189425 - MIR SINE MIR -62 146 88 509 303 35 7 chr1 4004477 4004674 -278188990 - MIR SINE MIR -24 238 33 474 234 123 47 chr1 4004734 4004905 -278188759 - MIR SINE MIR -69 193 10 1708 175 3 7 chr1 4005818 4005951 -278187713 + AluJb SINE Alu 1 133 -179 2397 96 0 0 chr1 4005951 4006263 -278187401 + AluSq SINE Alu 1 312 -1 1708 175 3 7 chr1 4006263 4006420 -278187244 + AluJb SINE Alu 133 290 -22 2105 110 0 14 chr1 4006422 4006714 -278186950 + AluSx SINE Alu 1 288 -24 447 301 63 42 chr1 4006725 4006964 -278186700 - MIR SINE MIR 0 262 19 336 286 98 0 chr1 4007004 4007116 -278186548 - L2 LINE L2 0 3313 3191 436 324 159 0 chr1 4007607 4007777 -278185887 + MIR SINE MIR 48 244 -18 280 355 48 18 chr1 4008161 4008327 -278185337 - MIR SINE MIR -3 259 89 489 297 207 8 chr1 4008377 4008633 -278185031 + L3 LINE CR1 1264 1570 -7 181 321 231 8 chr1 4010604 4010738 -278182926 - MIR3 SINE MIR -43 165 2 423 256 76 29 chr1 4012079 4012251 -278181413 + MIR SINE MIR 79 258 -4 508 344 111 26 chr1 4012485 4012910 -278180754 - L2 LINE L2 0 3313 2853 2061 134 3 7 chr1 4012983 4013290 -278180374 + AluSx SINE Alu 1 306 -6 411 106 0 0 chr1 4016412 4016478 -278177186 + (GGA)n Simple_repeat Simple_repeat 1 66 0 555 265 53 21 chr1 4016701 4016890 -278176774 + MER117 DNA MER1_type 3 197 0 2022 138 0 0 chr1 4018779 4019076 -278174588 - AluSx SINE Alu -15 297 1 205 283 104 38 chr1 4019088 4019194 -278174470 - MIR3 SINE MIR -49 159 47 24 53 0 0 chr1 4019341 4019379 -278174285 + GC_rich Low_complexity Low_complexity 1 38 0 24 32 0 0 chr1 4019386 4019417 -278174247 + GC_rich Low_complexity Low_complexity 1 31 0 218 200 0 67 chr1 4020240 4020315 -278173349 + GA-rich Low_complexity Low_complexity 1 70 0 585 134 31 10 chr1 4021524 4021621 -278172043 + FRAM SINE Alu 63 161 -15 35 41 0 0 chr1 4021621 4021670 -278171994 + AT_rich Low_complexity Low_complexity 1 49 0 2412 84 0 0 chr1 4021836 4022147 -278171517 - AluY SINE Alu 0 311 1 589 216 24 24 chr1 4022147 4022264 -278171400 - L2 LINE L2 -5 3308 3189 201 338 27 68 chr1 4023075 4023223 -278170441 - L2 LINE L2 -56 3216 3075 458 223 16 0 chr1 4026050 4026172 -278167492 + MER33 DNA MER1_type 1 119 -97 1015 155 6 0 chr1 4026172 4026333 -278167331 - AluJb SINE Alu -16 296 135 2342 83 0 0 chr1 4026333 4026633 -278167031 - AluSx SINE Alu -12 300 1 2174 117 0 7 chr1 4026644 4026943 -278166721 - AluSx SINE Alu -15 297 1 2304 94 0 0 chr1 4027086 4027385 -278166279 + AluSq SINE Alu 1 299 -14 2066 108 14 0 chr1 4027385 4027672 -278165992 + AluSq SINE Alu 1 292 -21 837 179 7 0 chr1 4027672 4027812 -278165852 - FLAM_C SINE Alu -2 141 1 863 172 29 5 chr1 4027813 4028022 -278165642 + MER33 DNA MER1_type 111 324 0 1346 143 0 19 chr1 4030549 4030765 -278162899 - AluJo SINE Alu -16 296 85 1992 133 0 0 chr1 4031224 4031539 -278162125 + AluSx SINE Alu 3 317 0 502 303 143 6 chr1 4031568 4031743 -278161921 + MIR SINE MIR 49 247 -15 873 266 70 73 chr1 4032061 4032347 -278161317 - L2 LINE L2 -275 3038 2752 2137 103 3 10 chr1 4032347 4032649 -278161015 - AluSc SINE Alu -9 300 1 441 36 0 0 chr1 4032651 4032706 -278160958 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 2029 76 36 4 chr1 4032706 4032981 -278160683 - AluSp SINE Alu -29 284 1 873 266 70 73 chr1 4032981 4033281 -278160383 - L2 LINE L2 -560 2753 2451 1793 123 27 41 chr1 4033288 4033580 -278160084 + AluJb SINE Alu 11 298 -14 225 206 0 73 chr1 4033584 4033652 -278160012 + L1MC4 LINE L1 7169 7231 -811 680 168 0 35 chr1 4033654 4033689 -278159975 - AluSx SINE Alu -144 168 133 2095 109 7 3 chr1 4033689 4033983 -278159681 - AluSx SINE Alu -16 296 2 680 168 0 35 chr1 4033983 4034060 -278159604 - AluSx SINE Alu -179 133 60 232 224 165 0 chr1 4034060 4034145 -278159519 + L1MC4 LINE L1 7234 7332 -710 460 299 226 6 chr1 4034189 4034320 -278159344 + L1MC4 LINE L1 7436 7537 -505 1817 159 10 3 chr1 4034320 4034615 -278159049 + AluJb SINE Alu 1 297 -15 460 299 226 6 chr1 4034615 4034645 -278159019 + L1MC4 LINE L1 7537 7559 -483 2602 45 0 0 chr1 4034645 4034955 -278158709 + AluY SINE Alu 1 310 -1 460 299 226 6 chr1 4034955 4035287 -278158377 + L1MC4 LINE L1 7559 8039 -3 2350 87 0 10 chr1 4035289 4035601 -278158063 + AluSx SINE Alu 3 311 -1 510 240 77 60 chr1 4035628 4035762 -278157902 - L2 LINE L2 -1481 1833 1703 1745 136 93 0 chr1 4035762 4036041 -278157623 + AluJb SINE Alu 1 305 -7 2190 101 0 13 chr1 4036047 4036355 -278157309 + AluSg SINE Alu 1 304 -6 510 240 77 60 chr1 4036355 4036446 -278157218 - L2 LINE L2 -1615 1699 1597 1185 153 5 0 chr1 4037292 4037481 -278156183 + AluJb SINE Alu 117 306 -6 220 303 40 13 chr1 4037575 4037651 -278156013 - MIR SINE MIR -79 183 106 2098 125 0 7 chr1 4037737 4038041 -278155623 + AluSx SINE Alu 1 302 -10 215 231 197 51 chr1 4041542 4041659 -278152005 - L2 LINE L2 -184 3088 2955 267 401 40 9 chr1 4042376 4042603 -278151061 + MIR SINE MIR 14 247 -15 238 245 101 57 chr1 4044036 4044195 -278149469 + L2 LINE L2 2941 3106 -166 219 191 11 149 chr1 4044332 4044392 -278149272 + L2 LINE L2 3191 3235 -37 2246 105 0 3 chr1 4044392 4044698 -278148966 + AluSx SINE Alu 1 305 -7 219 191 11 149 chr1 4044698 4044731 -278148933 + L2 LINE L2 3235 3271 -1 216 284 145 41 chr1 4044747 4044886 -278148778 - MIR SINE MIR -47 161 13 * 430 151 32 32 chr1 4044884 4044977 -278148687 + MER5A DNA MER1_type 14 106 -83 1694 83 0 13 chr1 4045162 4045392 -278148272 + AluSg/x SINE Alu 83 309 -1 221 294 0 33 chr1 4047178 4047270 -278146394 + GA-rich Low_complexity Low_complexity 2 90 0 208 200 46 0 chr1 4048198 4048263 -278145401 - MIR SINE MIR -86 122 55 210 150 0 0 chr1 4048588 4048628 -278145036 + (CGG)n Simple_repeat Simple_repeat 1 40 0 211 256 12 12 chr1 4048695 4048777 -278144887 + (CGGG)n Simple_repeat Simple_repeat 4 85 0 23 0 0 0 chr1 4050250 4050273 -278143391 + GC_rich Low_complexity Low_complexity 1 23 0 264 221 39 0 chr1 4051756 4051833 -278141831 + G-rich Low_complexity Low_complexity 5 84 0 183 80 0 0 chr1 4052465 4052490 -278141174 + (TG)n Simple_repeat Simple_repeat 1 25 0 262 214 274 8 chr1 4053163 4053280 -278140384 + MIR3 SINE MIR 45 192 -16 347 262 78 30 chr1 4054223 4054362 -278139302 + MIR SINE MIR 31 174 -34 2035 106 34 10 chr1 4054397 4054689 -278138975 - AluSq SINE Alu -14 299 1 2406 73 0 3 chr1 4054697 4054998 -278138666 - AluSc SINE Alu -9 300 1 2237 87 0 17 chr1 4054998 4055297 -278138367 - AluSc SINE Alu -15 294 1 203 368 23 0 chr1 4055313 4055400 -278138264 + MIR SINE MIR 173 261 -1 267 285 277 13 chr1 4055477 4055712 -278137952 - L3 LINE CR1 -1 1576 1280 206 253 32 0 chr1 4056408 4056472 -278137192 + MIR SINE MIR 103 145 -63 22 35 0 0 chr1 4056744 4056773 -278136891 + GC_rich Low_complexity Low_complexity 1 29 0 306 215 16 33 chr1 4057016 4057137 -278136527 + (CCCCG)n Simple_repeat Simple_repeat 2 120 0 2211 70 18 3 chr1 4057567 4057851 -278135813 - AluSg SINE Alu -20 290 3 200 298 58 87 chr1 4057977 4058185 -278135479 + L2 LINE L2 2976 3177 -95 496 209 58 68 chr1 4058191 4058382 -278135282 - MER53 DNA DNA 0 189 1 2182 128 0 0 chr1 4058450 4058756 -278134908 - AluSx SINE Alu -6 306 1 193 211 115 0 chr1 4058907 4058959 -278134705 - MIR SINE MIR -137 125 68 209 352 63 42 chr1 4059133 4059275 -278134389 + MIR SINE MIR 100 244 -18 180 243 0 0 chr1 4060436 4060473 -278133191 + MIR SINE MIR 218 254 -8 1597 173 0 7 chr1 4060796 4061110 -278132554 + AluJo SINE Alu 18 312 0 623 320 104 0 chr1 4061166 4061388 -278132276 - MIR SINE MIR -1 261 17 183 309 140 51 chr1 4061589 4061767 -278131897 + MIR SINE MIR 51 244 -18 181 332 138 37 chr1 4062575 4062843 -278130821 + L2 LINE L2 2874 3168 -145 188 291 89 25 chr1 4063044 4063123 -278130541 - MIR SINE MIR -89 119 36 2090 87 21 10 chr1 4063383 4063671 -278129993 + AluSx SINE Alu 1 291 -21 257 270 167 29 chr1 4063682 4063886 -278129778 - L2 LINE L2 -195 3118 2887 1128 148 0 0 chr1 4063959 4064128 -278129536 - AluSg/x SINE Alu -10 300 132 2112 126 0 3 chr1 4064129 4064423 -278129241 - AluSg SINE Alu -17 293 1 2325 91 0 3 chr1 4064436 4064744 -278128920 - AluSg SINE Alu -2 308 2 221 231 0 62 chr1 4065564 4065629 -278128035 - MIR SINE MIR -86 122 62 489 236 36 0 chr1 4065662 4065772 -278127892 + L2 LINE L2 3155 3268 -4 205 250 33 0 chr1 4065773 4065833 -278127831 + MIR SINE MIR 130 191 -71 2151 97 6 67 chr1 4065875 4066259 -278127405 - AluSx SINE Alu 0 364 1 1373 92 5 0 chr1 4066787 4066972 -278126692 - AluSp SINE Alu -3 310 125 216 0 0 0 chr1 4068467 4068491 -278125173 + (TCCC)n Simple_repeat Simple_repeat 1 24 0 373 278 157 15 chr1 4071490 4071757 -278121907 + L2 LINE L2 2740 3046 -267 23 33 0 0 chr1 4072426 4072456 -278121208 + GC_rich Low_complexity Low_complexity 1 30 0 213 39 0 0 chr1 4072852 4072878 -278120786 + (CCCCG)n Simple_repeat Simple_repeat 1 26 0 21 36 0 0 chr1 4072894 4072922 -278120742 + GC_rich Low_complexity Low_complexity 1 28 0 241 260 0 27 chr1 4073191 4073264 -278120400 - L2 LINE L2 -339 2975 2905 344 266 64 138 chr1 4074703 4074844 -278118820 - MIR SINE MIR -11 251 101 2474 74 3 0 chr1 4074844 4075154 -278118510 - AluY SINE Alu 0 311 1 2054 119 0 42 chr1 4075156 4075466 -278118198 - AluSq SINE Alu -16 297 1 344 266 64 138 chr1 4075466 4075524 -278118140 - MIR SINE MIR -162 100 64 231 344 0 21 chr1 4076330 4076426 -278117238 + MIR SINE MIR 158 251 -11 197 400 0 0 chr1 4077076 4077181 -278116483 + MIR SINE MIR 30 134 -74 180 0 0 0 chr1 4077606 4077626 -278116038 + (CGGGG)n Simple_repeat Simple_repeat 2 21 0 246 260 14 0 chr1 4078609 4078682 -278114982 + C-rich Low_complexity Low_complexity 2 75 0 2118 89 32 0 chr1 4079702 4079983 -278113681 + AluSx SINE Alu 1 290 -22 190 319 154 0 chr1 4080446 4080537 -278113127 + L2 LINE L2 3151 3255 -17 2171 110 3 0 chr1 4081508 4081809 -278111855 + AluSx SINE Alu 1 302 -10 933 168 19 47 chr1 4082153 4082367 -278111297 - Tigger1 DNA MER2_type -2210 208 1 1804 132 28 24 chr1 4082370 4082658 -278111006 - AluJo SINE Alu -23 289 1 180 179 0 0 chr1 4082806 4082845 -278110819 + (TG)n Simple_repeat Simple_repeat 2 40 0 2176 100 0 0 chr1 4083325 4083636 -278110028 + AluSg SINE Alu 1 311 0 1101 123 0 0 chr1 4083670 4083824 -278109840 + AluSq SINE Alu 3 156 -157 1970 145 3 0 chr1 4083833 4084123 -278109541 + AluSx SINE Alu 7 297 -15 303 238 132 17 chr1 4084124 4084251 -278109413 - MER69 DNA AcHobo 0 2526 2385 291 238 0 0 chr1 4084638 4084701 -278108963 - HERV16 LTR ERVL -2465 2531 2469 766 163 0 92 chr1 4084702 4084865 -278108799 + L1MB3 LINE L1 5966 6142 -41 2577 40 0 0 chr1 4084865 4085168 -278108496 + AluY SINE Alu 1 303 -8 1889 160 0 3 chr1 4085178 4085472 -278108192 + AluJo SINE Alu 1 293 -19 766 163 0 92 chr1 4085472 4085487 -278108177 + L1MB3 LINE L1 6151 6166 -17 2169 123 0 0 chr1 4085487 4085788 -278107876 - AluSq SINE Alu -12 301 1 766 163 0 92 chr1 4085788 4085836 -278107828 + L1MB3 LINE L1 6166 6182 -1 1806 263 141 3 chr1 4085857 4086587 -278107077 - HERV16 LTR ERVL -2536 2460 1630 2002 128 3 16 chr1 4086618 4086923 -278106741 + AluSx SINE Alu 1 301 -11 320 119 0 0 chr1 4087001 4087063 -278106601 - L1MA4 LINE L1 -120 6183 6119 1370 207 24 24 chr1 4087074 4087269 -278106395 - AluJo SINE Alu -1 311 114 2525 61 0 0 chr1 4087269 4087580 -278106084 + AluY SINE Alu 1 311 0 1370 207 24 24 chr1 4087580 4087679 -278105985 - AluJo SINE Alu -197 115 17 1720 164 31 0 chr1 4087757 4088049 -278105615 + AluJb SINE Alu 1 301 -11 1362 241 23 10 chr1 4088052 4088446 -278105218 + L1M4 LINE L1 2445 2843 -3303 672 172 78 0 chr1 4088448 4088564 -278105100 + AluSq SINE Alu 11 135 -177 1417 130 0 5 chr1 4088565 4088780 -278104884 + AluSq SINE Alu 95 308 -5 1184 131 11 0 chr1 4088805 4088988 -278104676 + AluSq SINE Alu 129 313 0 461 241 0 71 chr1 4088991 4089048 -278104616 + L1M4 LINE L1 2814 2873 -3273 2084 114 3 3 chr1 4089048 4089346 -278104318 - AluSp SINE Alu -15 298 1 461 241 0 71 chr1 4089346 4089500 -278104164 + L1M4 LINE L1 2873 3010 -3136 2152 103 3 3 chr1 4089500 4089792 -278103872 - AluSx SINE Alu -14 298 7 2292 94 7 0 chr1 4089847 4090154 -278103510 + AluSp SINE Alu 5 313 0 419 132 26 13 chr1 4090184 4090282 -278103382 + AluJ/FRAM SINE Alu 232 312 0 1060 129 0 2 chr1 4090288 4090544 -278103120 + AluSx SINE Alu 1 303 -9 642 238 86 0 chr1 4090546 4090815 -278102849 + L1M4 LINE L1 3052 3343 -2803 2004 122 3 35 chr1 4090818 4091129 -278102535 + AluSx SINE Alu 1 301 -11 2297 98 10 0 chr1 4091134 4091440 -278102224 + AluY SINE Alu 1 309 -2 253 271 0 0 chr1 4091461 4091531 -278102133 + L1ME3A LINE L1 5784 5853 -317 428 250 43 43 chr1 4091535 4091699 -278101965 + L1ME3A LINE L1 5971 6134 -36 287 226 0 0 chr1 4091763 4091816 -278101848 + L2 LINE L2 3208 3260 -12 730 304 26 7 chr1 4091859 4092103 -278101561 - MIR SINE MIR -13 249 3 2405 21 0 3 chr1 4092827 4093160 -278100504 - AluY SINE Alu 0 332 1 1935 148 0 13 chr1 4093466 4093769 -278099895 + AluJb SINE Alu 1 299 -13 2225 84 3 17 chr1 4093769 4094068 -278099596 + AluSp SINE Alu 1 295 -18 1408 145 161 0 chr1 4094095 4094350 -278099314 - AluJb SINE Alu -2 300 5 1772 156 0 34 chr1 4094849 4095026 -278098638 - AluJo SINE Alu -2 310 147 2235 73 0 33 chr1 4095026 4095328 -278098336 - AluY SINE Alu -13 298 7 1772 156 0 34 chr1 4095328 4095471 -278098193 - AluJo SINE Alu -165 147 1 1946 126 13 13 chr1 4095772 4096081 -278097583 + AluY SINE Alu 1 309 -2 932 126 0 0 chr1 4096416 4096559 -278097105 - AluSg/x SINE Alu 0 312 170 663 73 0 0 chr1 4096566 4096648 -278097016 - AluY SINE Alu -15 296 215 2402 76 0 0 chr1 4096706 4097010 -278096654 - AluY SINE Alu -7 304 1 1128 188 31 5 chr1 4097057 4097280 -278096384 + AluJb SINE Alu 1 229 -83 2043 121 3 0 chr1 4097280 4097569 -278096095 - AluSg SINE Alu -20 290 1 2373 76 0 0 chr1 4097599 4097900 -278095764 - AluY SINE Alu -10 301 1 1521 251 147 37 chr1 4098035 4098816 -278094848 - L2 LINE L2 -6 3307 2613 2119 121 0 0 chr1 4098816 4099121 -278094543 + AluSx SINE Alu 1 305 -7 1521 251 147 37 chr1 4099121 4099137 -278094527 - L2 LINE L2 -700 2613 2600 1707 141 52 21 chr1 4099137 4099428 -278094236 + AluJo SINE Alu 1 300 -12 1521 251 147 37 chr1 4099428 4099831 -278093833 - L2 LINE L2 -713 2600 1723 894 181 75 0 chr1 4100313 4100473 -278093191 - FAM SINE Alu -3 172 1 218 297 148 0 chr1 4100654 4100716 -278092948 - MIR SINE MIR -76 186 135 1790 171 0 16 chr1 4100716 4101032 -278092632 + AluJb SINE Alu 1 311 -1 218 297 148 0 chr1 4101032 4101070 -278092594 - MIR SINE MIR -127 135 71 850 97 0 0 chr1 4101178 4101291 -278092373 + AluSq/x SINE Alu 3 115 -198 4336 117 222 81 chr1 4101292 4102514 -278091150 + pTR5 LTR ERV1 276 2295 -143 817 217 18 24 chr1 4102535 4102693 -278090971 + FRAM SINE Alu 1 159 -143 2528 61 0 0 chr1 4102693 4103004 -278090660 + AluY SINE Alu 1 311 0 27 73 0 0 chr1 4104063 4104118 -278089546 + GC_rich Low_complexity Low_complexity 1 55 0 27 29 0 0 chr1 4104458 4104492 -278089172 + GC_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr1 4104515 4104536 -278089128 + GC_rich Low_complexity Low_complexity 1 21 0 222 369 31 41 chr1 4105733 4105928 -278087736 - MIR SINE MIR -50 212 20 2120 96 0 23 chr1 4106067 4106369 -278087295 - AluSx SINE Alu -17 295 1 1529 82 0 0 chr1 4106377 4106572 -278087092 - AluSx SINE Alu -117 195 1 2171 89 7 0 chr1 4106627 4106932 -278086732 - AluSx SINE Alu 0 307 1 2147 113 0 3 chr1 4106996 4107297 -278086367 - AluSx SINE Alu -12 300 1 1395 113 39 18 chr1 4107782 4108011 -278085653 - AluSg/x SINE Alu -1 309 76 252 188 150 50 chr1 4108012 4108092 -278085572 + MER3 DNA MER1_type 121 208 -1 216 342 54 27 chr1 4108347 4108458 -278085206 + L2 LINE L2 3200 3313 0 2403 65 0 10 chr1 4108520 4108829 -278084835 - AluY SINE Alu -5 306 1 2157 103 7 3 chr1 4108829 4109129 -278084535 - AluSx SINE Alu -11 301 1 2285 73 0 3 chr1 4109177 4109477 -278084187 + AluY SINE Alu 1 299 -12 1408 83 0 0 chr1 4109478 4109658 -278084006 + AluSq SINE Alu 134 313 0 345 279 35 64 chr1 4110094 4110266 -278083398 + L1MC5 LINE L1 7536 7702 -259 412 277 207 24 chr1 4110267 4110480 -278083184 - L1ME1 LINE L1 -5 6161 5910 432 312 68 17 chr1 4110645 4110693 -278082971 + L1MC5 LINE L1 7625 7669 -292 1557 184 6 32 chr1 4110693 4111008 -278082656 - AluJb SINE Alu -1 311 5 432 312 68 17 chr1 4111008 4111251 -278082413 + L1MC5 LINE L1 7669 7931 -30 513 214 8 26 chr1 4112635 4112752 -278080912 - L1MB8 LINE L1 -9 6169 6055 827 231 12 12 chr1 4112776 4112949 -278080715 + MER21B LTR ERV1 39 211 -652 260 196 71 0 chr1 4112960 4113016 -278080648 + MER21B LTR ERV1 693 752 -111 1920 211 14 10 chr1 4113078 4113504 -278080160 - L1MB8 LINE L1 -532 5642 5220 988 173 9 91 chr1 4113521 4113582 -278080082 + AluJo SINE Alu 86 150 -162 2320 78 0 0 chr1 4113582 4113877 -278079787 + AluY SINE Alu 1 295 -16 988 173 9 91 chr1 4113877 4114046 -278079618 + AluJo SINE Alu 150 297 -15 2436 61 0 0 chr1 4114099 4114396 -278079268 + AluY SINE Alu 1 297 -14 2128 114 3 0 chr1 4114407 4114713 -278078951 + AluSq SINE Alu 1 307 -6 1454 166 37 24 chr1 4114760 4115056 -278078608 - AluJb SINE Alu -12 300 1 2211 71 27 3 chr1 4115157 4115454 -278078210 - AluSc SINE Alu -5 304 1 2226 50 0 14 chr1 4115455 4115733 -278077931 - AluY SINE Alu -37 274 1 2669 165 35 4 chr1 4115734 4116243 -278077421 - L1MB3 LINE L1 -355 5828 5304 280 295 19 0 chr1 4116278 4116383 -278077281 + (TA)n Simple_repeat Simple_repeat 1 107 0 2349 185 45 38 chr1 4116429 4116460 -278077204 - L1MB3 LINE L1 -840 5306 5277 453 76 38 13 chr1 4116460 4116539 -278077125 - L1MA5 LINE L1 0 6300 6220 2349 185 45 38 chr1 4116539 4116975 -278076689 - L1MB3 LINE L1 -869 5277 4878 2030 99 44 7 chr1 4116975 4117268 -278076396 - AluSg SINE Alu -6 304 1 2349 185 45 38 chr1 4117268 4117489 -278076175 - L1MB3 LINE L1 -1268 4878 4660 1637 156 22 19 chr1 4117531 4117801 -278075863 - AluSx SINE Alu -41 271 1 366 188 4 127 chr1 4117801 4117832 -278075832 - L1MB8 LINE L1 -1094 5052 5019 1667 159 7 21 chr1 4117832 4118121 -278075543 + AluJo SINE Alu 9 293 -19 366 188 4 127 chr1 4118121 4118225 -278075439 - L1MB8 LINE L1 -1127 5019 4931 2380 61 3 0 chr1 4118392 4118686 -278074978 + AluY SINE Alu 1 295 -16 270 0 0 0 chr1 4119488 4119518 -278074146 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2172 73 0 0 chr1 4119522 4119797 -278073867 - AluY SINE Alu -36 275 1 935 126 0 22 chr1 4120197 4120332 -278073332 - FLAM_C SINE Alu -1 132 1 1802 153 3 0 chr1 4120384 4120672 -278072992 - L1MC/D LINE L1 -732 5612 5324 33 0 0 0 chr1 4120692 4120725 -278072939 + AT_rich Low_complexity Low_complexity 1 33 0 1206 130 42 28 chr1 4120754 4120839 -278072825 - AluSq SINE Alu -95 218 136 2164 100 7 0 chr1 4120839 4121139 -278072525 - AluSq SINE Alu -11 302 1 1394 169 9 123 chr1 4121148 4121302 -278072362 - AluJb SINE Alu -12 290 120 2062 113 0 10 chr1 4121302 4121612 -278072052 - AluSq SINE Alu -5 308 2 1394 169 9 123 chr1 4121612 4121632 -278072032 - AluJb SINE Alu -182 120 99 2392 60 0 7 chr1 4121632 4121931 -278071733 - AluY SINE Alu -14 297 1 1394 169 9 123 chr1 4121931 4122081 -278071583 - AluJb SINE Alu -203 99 2 1206 130 42 28 chr1 4122081 4122200 -278071464 - AluSq SINE Alu -184 129 1 618 186 12 43 chr1 4122200 4122302 -278071362 - L1MC/D LINE L1 -847 5299 5202 2274 38 52 0 chr1 4122302 4122590 -278071074 - AluY SINE Alu -8 303 1 618 186 12 43 chr1 4122590 4122648 -278071016 - L1MC/D LINE L1 -944 5202 5144 188 224 20 0 chr1 4122871 4122920 -278070744 - MIR SINE MIR -61 147 98 234 217 72 0 chr1 4123581 4123664 -278070000 - L1MA10 LINE L1 -1 6333 6245 8895 115 20 51 chr1 4123664 4123703 -278069961 + Tigger1 DNA MER2_type 1 40 -2378 2270 100 0 0 chr1 4123703 4124003 -278069661 - AluSq SINE Alu -13 300 1 8895 115 20 51 chr1 4124003 4124035 -278069629 + Tigger1 DNA MER2_type 40 71 -2347 2127 102 3 3 chr1 4124035 4124329 -278069335 + AluSx SINE Alu 1 294 -18 8895 115 20 51 chr1 4124329 4124736 -278068928 + Tigger1 DNA MER2_type 71 489 -1929 1958 119 20 3 chr1 4124736 4125031 -278068633 + AluSx SINE Alu 1 300 -12 8895 115 20 51 chr1 4125031 4125520 -278068144 + Tigger1 DNA MER2_type 489 992 -1426 2098 132 0 0 chr1 4125520 4125823 -278067841 - AluSx SINE Alu -9 303 1 8895 115 20 51 chr1 4125823 4125924 -278067740 + Tigger1 DNA MER2_type 992 1095 -1323 2119 110 3 13 chr1 4125924 4126223 -278067441 + AluSx SINE Alu 1 296 -16 8895 115 20 51 chr1 4126223 4126477 -278067187 + Tigger1 DNA MER2_type 1095 1355 -1063 2263 105 0 0 chr1 4126477 4126782 -278066882 + AluSg SINE Alu 1 305 -5 8895 115 20 51 chr1 4126782 4126793 -278066871 + Tigger1 DNA MER2_type 1355 1365 -1053 2039 112 0 11 chr1 4126793 4127132 -278066532 + AluSx SINE Alu 1 336 0 8895 115 20 51 chr1 4127132 4127219 -278066445 + Tigger1 DNA MER2_type 1365 1379 -1039 2317 169 49 5 chr1 4127219 4127627 -278066037 - MSTB1 LTR MaLR -4 428 3 8895 115 20 51 chr1 4127627 4127724 -278065940 + Tigger1 DNA MER2_type 1379 1478 -940 1905 126 0 7 chr1 4127726 4128012 -278065652 + AluY SINE Alu 21 304 -7 1208 140 0 0 chr1 4128012 4128191 -278065473 + AluSg/x SINE Alu 132 310 0 520 159 71 26 chr1 4128191 4128304 -278065360 + Tigger1 DNA MER2_type 1471 1588 -830 1796 135 56 7 chr1 4128305 4128593 -278065071 + AluSx SINE Alu 1 302 -10 406 134 0 0 chr1 4128593 4128660 -278065004 + Tigger1 DNA MER2_type 1828 1894 -524 254 276 0 0 chr1 4128660 4128718 -278064946 + MER52A LTR ERV1 1 58 -1697 195 232 0 0 chr1 4128725 4128781 -278064883 + (CAG)n Simple_repeat Simple_repeat 2 57 0 5402 171 158 6 chr1 4129224 4130303 -278063361 + MER52A LTR ERV1 512 1755 0 2531 113 33 141 chr1 4130303 4130371 -278063293 + Tigger1 DNA MER2_type 1889 1963 -455 2336 70 0 3 chr1 4130371 4130669 -278062995 - AluY SINE Alu -14 297 1 2531 113 33 141 chr1 4130669 4130699 -278062965 + Tigger1 DNA MER2_type 1963 1995 -423 1491 106 13 13 chr1 4130699 4130926 -278062738 + AluSc SINE Alu 67 293 -16 2531 113 33 141 chr1 4130926 4130978 -278062686 + Tigger1 DNA MER2_type 1995 2051 -367 1753 169 0 13 chr1 4130978 4131285 -278062379 - AluJo SINE Alu -9 303 1 2531 113 33 141 chr1 4131285 4131414 -278062250 + Tigger1 DNA MER2_type 2051 2192 -226 2055 88 7 4 chr1 4131414 4131687 -278061977 + AluSx SINE Alu 25 298 -14 2531 113 33 141 chr1 4131687 4131802 -278061862 + Tigger1 DNA MER2_type 2192 2202 -216 2352 65 3 0 chr1 4131802 4132095 -278061569 - AluY SINE Alu -14 297 4 2531 113 33 141 chr1 4132095 4132291 -278061373 + Tigger1 DNA MER2_type 2202 2418 0 630 248 95 25 chr1 4132300 4132542 -278061122 - L1ME1 LINE L1 -88 6078 5820 1198 112 0 0 chr1 4132542 4132712 -278060952 - AluSq SINE Alu -10 303 134 2474 65 0 0 chr1 4132712 4133018 -278060646 - AluSc SINE Alu -3 306 1 2090 108 3 7 chr1 4133029 4133326 -278060338 - AluSx SINE Alu -16 296 1 844 181 0 0 chr1 4133383 4133516 -278060148 - FLAM_C SINE Alu 0 133 1 784 143 71 0 chr1 4133516 4133642 -278060022 - AluJb SINE Alu -24 288 154 7251 61 41 2 chr1 4133678 4133957 -278059707 - LTR13 LTR ERVK -13 994 727 204 40 0 0 chr1 4133957 4133982 -278059682 + (GA)n Simple_repeat Simple_repeat 2 26 0 7251 61 41 2 chr1 4133982 4134659 -278059005 - LTR13 LTR ERVK -280 727 1 754 178 0 22 chr1 4134683 4134818 -278058846 - FLAM_C SINE Alu -1 132 1 2320 98 0 0 chr1 4135132 4135437 -278058227 - AluSx SINE Alu -7 305 1 1627 154 20 29 chr1 4135763 4136069 -278057595 - AluSx SINE Alu -9 303 1 1906 236 38 11 chr1 4136082 4136135 -278057529 - L1MB7 LINE L1 -8 6176 6124 923 328 49 21 chr1 4136135 4136608 -278057056 - L1MD3 LINE L1 -1867 6128 5643 2255 92 0 7 chr1 4139417 4139723 -278053941 + AluSx SINE Alu 1 304 -8 2184 99 7 0 chr1 4140335 4140629 -278053035 - AluSp SINE Alu -17 296 1 2180 95 0 7 chr1 4140653 4140949 -278052715 - AluSg SINE Alu -16 294 1 260 212 50 10 chr1 4141086 4141185 -278052479 + (GGCTG)n Simple_repeat Simple_repeat 4 106 0 708 215 85 22 chr1 4141374 4141597 -278052067 - MLT1C LTR MaLR -225 242 6 250 348 82 15 chr1 4142122 4142392 -278051272 - L1ME1 LINE L1 -1981 5827 5540 311 317 145 0 chr1 4143120 4143341 -278050323 + L2 LINE L2 2834 3086 -186 2097 134 0 7 chr1 4143928 4144235 -278049429 - AluSx SINE Alu -6 306 2 816 163 0 0 chr1 4144252 4144381 -278049283 - AluJb SINE Alu -15 297 169 1886 137 58 0 chr1 4144424 4144717 -278048947 + AluSx SINE Alu 1 310 -2 1763 52 39 4 chr1 4144765 4144995 -278048669 + AluY SINE Alu 63 300 -11 204 211 0 0 chr1 4145203 4145241 -278048423 + GA-rich Low_complexity Low_complexity 2 39 0 356 279 29 0 chr1 4146640 4146744 -278046920 - MIR SINE MIR -97 165 59 1657 198 36 33 chr1 4148802 4149166 -278044498 - MLT1A1 LTR MaLR 0 365 1 309 135 0 0 chr1 4149221 4149273 -278044391 + (TG)n Simple_repeat Simple_repeat 1 52 0 470 276 24 86 chr1 4149698 4149795 -278043869 - MIR SINE MIR -12 250 171 2192 120 0 7 chr1 4149795 4150103 -278043561 - AluSx SINE Alu -6 306 1 470 276 24 86 chr1 4150103 4150215 -278043449 - MIR SINE MIR -91 171 54 988 293 123 22 chr1 4150538 4151202 -278042462 + L2 LINE L2 2293 3025 -288 1738 165 0 4 chr1 4151207 4151480 -278042184 + AluJb SINE Alu 24 295 -17 414 369 7 0 chr1 4151706 4151855 -278041809 - MIR SINE MIR -19 243 94 505 277 144 5 chr1 4152040 4152242 -278041422 - MIR SINE MIR -36 226 8 2387 90 0 0 chr1 4152792 4153102 -278040562 - AluSg SINE Alu 0 310 1 237 264 94 28 chr1 4154175 4154281 -278039383 - MER5A DNA MER1_type -19 170 58 310 372 25 0 chr1 4154793 4154914 -278038750 + L1ME4a LINE L1 5647 5770 -2038 988 159 6 24 chr1 4154958 4155128 -278038536 + FAM SINE Alu 5 171 -4 1793 170 38 57 chr1 4155191 4155561 -278038103 + MLT1A1 LTR MaLR 2 364 -1 2459 55 0 0 chr1 4155833 4156125 -278037539 - AluY SINE Alu -19 292 1 2127 105 31 0 chr1 4156153 4156439 -278037225 + AluSx SINE Alu 1 295 -17 2131 122 0 0 chr1 4156528 4156832 -278036832 - AluSx SINE Alu -8 304 1 451 238 98 0 chr1 4157018 4157140 -278036524 + L1ME4a LINE L1 5965 6098 -23 2362 52 0 3 chr1 4157320 4157637 -278036027 + AluY SINE Alu 1 316 0 278 45 159 0 chr1 4157637 4157681 -278035983 + AluSc SINE Alu 130 180 -119 1256 53 0 0 chr1 4157695 4157846 -278035818 + AluYa8 SINE Alu 148 298 -12 266 340 57 0 chr1 4158268 4158374 -278035290 - MIR SINE MIR -70 192 81 2057 104 0 78 chr1 4159558 4159893 -278033771 - AluSx SINE Alu -3 309 1 189 171 0 0 chr1 4160095 4160130 -278033534 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 223 328 0 0 chr1 4160823 4160887 -278032777 + L2 LINE L2 3247 3310 -3 2034 95 44 7 chr1 4161227 4161521 -278032143 - AluSg SINE Alu -5 305 1 1829 126 30 43 chr1 4162077 4162233 -278031431 - AluJb SINE Alu -14 298 146 2430 62 13 0 chr1 4162233 4162537 -278031127 - AluSp SINE Alu -5 308 1 1829 126 30 43 chr1 4162537 4162681 -278030983 - AluJb SINE Alu -166 146 2 463 265 37 7 chr1 4162743 4162879 -278030785 + MIR3 SINE MIR 69 208 0 2402 70 0 19 chr1 4164715 4165051 -278028613 - AluY SINE Alu 0 331 2 540 300 91 11 chr1 4166002 4166388 -278027276 - MLT1C LTR MaLR -6 461 6 285 221 0 26 chr1 4167415 4167492 -278026172 + (CATATA)n Simple_repeat Simple_repeat 3 77 0 254 29 29 0 chr1 4167497 4167532 -278026132 + (CA)n Simple_repeat Simple_repeat 2 37 0 183 42 0 0 chr1 4168882 4168906 -278024758 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 2001 86 0 70 chr1 4168906 4169207 -278024457 - AluSx SINE Alu -32 280 1 2248 97 3 0 chr1 4169514 4169822 -278023842 + AluSc SINE Alu 1 309 0 2135 121 0 19 chr1 4170627 4170942 -278022722 - AluSx SINE Alu -3 309 1 2341 76 0 0 chr1 4172168 4172469 -278021195 - AluY SINE Alu -10 301 1 584 214 68 24 chr1 4172688 4172871 -278020793 + MLT1D LTR MaLR 28 200 -190 297 0 0 0 chr1 4173815 4173848 -278019816 + (TA)n Simple_repeat Simple_repeat 1 33 0 2335 89 3 0 chr1 4173848 4174150 -278019514 - AluSx SINE Alu -9 303 1 2300 106 3 0 chr1 4174426 4174737 -278018927 - AluSq SINE Alu -1 312 1 1976 152 76 19 chr1 4174772 4175140 -278018524 + MLT1B LTR MaLR 2 390 0 2138 78 42 0 chr1 4175784 4176067 -278017597 + AluY SINE Alu 1 295 -16 339 294 132 47 chr1 4176944 4177240 -278016424 + MLT1J1 LTR MaLR 126 446 0 502 314 118 4 chr1 4177339 4177568 -278016096 - MIR SINE MIR -6 256 2 2138 132 0 0 chr1 4178093 4178389 -278015275 + AluSx SINE Alu 1 296 -16 1951 120 7 7 chr1 4179230 4179521 -278014143 + AluJo SINE Alu 1 291 -21 2380 94 0 0 chr1 4179554 4179863 -278013801 + AluSx SINE Alu 1 309 -3 263 243 0 75 chr1 4180484 4180591 -278013073 + L2 LINE L2 2933 3031 -241 2081 108 0 17 chr1 4180770 4181058 -278012606 - AluSx SINE Alu -29 283 1 2450 67 0 13 chr1 4181802 4182116 -278011548 - AluY SINE Alu -1 310 1 33 0 0 0 chr1 4183172 4183205 -278010459 + AT_rich Low_complexity Low_complexity 1 33 0 327 284 99 12 chr1 4183527 4183689 -278009975 - HAL1 LINE L1 -652 1855 1680 304 289 30 52 chr1 4183734 4183869 -278009795 - MLT1J LTR MaLR -54 457 326 278 298 36 0 chr1 4184525 4184609 -278009055 - MER5A DNA MER1_type -89 100 14 600 97 11 0 chr1 4184732 4184818 -278008846 - L1MA1 LINE L1 -4 6298 6209 2067 136 0 13 chr1 4184818 4185128 -278008536 + AluSx SINE Alu 1 306 -6 198 103 0 0 chr1 4185137 4185166 -278008498 + (GGGA)n Simple_repeat Simple_repeat 4 32 0 1209 130 9 9 chr1 4185174 4185389 -278008275 - L1MA1 LINE L1 -82 6220 6006 349 288 29 58 chr1 4185602 4185741 -278007923 + MER5B DNA MER1_type 15 149 -29 394 258 57 98 chr1 4186484 4186548 -278007116 - MER5A DNA MER1_type -1 188 123 2093 139 0 13 chr1 4186548 4186864 -278006800 + AluSx SINE Alu 1 312 0 394 258 57 98 chr1 4186864 4186993 -278006671 - MER5A DNA MER1_type -66 123 3 229 350 90 11 chr1 4187278 4187455 -278006209 + L2 LINE L2 2086 2276 -1038 462 298 77 80 chr1 4187807 4188159 -278005505 + L1M4 LINE L1 2775 3125 -3021 319 219 134 0 chr1 4190151 4190233 -278003431 + L2 LINE L2 3179 3271 -1 185 256 116 35 chr1 4190364 4190450 -278003214 - L2 LINE L2 -8 3264 3172 9376 15 3 251 chr1 4191349 4193192 -278000472 + SVA Other Other 1 1386 0 240 111 0 0 chr1 4193232 4193268 -278000396 + (T)n Simple_repeat Simple_repeat 1 36 0 283 342 114 63 chr1 4195133 4195657 -277998007 - L3 LINE CR1 -114 1463 913 204 67 0 0 chr1 4195941 4195971 -277997693 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 192 250 171 0 chr1 4195972 4196048 -277997616 - L2 LINE L2 -14 3258 3170 252 319 96 24 chr1 4196555 4196721 -277996943 + MIR SINE MIR 1 178 -84 257 106 0 21 chr1 4197873 4197920 -277995744 + (CA)n Simple_repeat Simple_repeat 2 47 0 180 0 0 0 chr1 4197925 4197945 -277995719 + (TC)n Simple_repeat Simple_repeat 2 21 0 241 376 31 25 chr1 4198345 4198507 -277995157 - MIR SINE MIR -59 203 41 2151 121 0 0 chr1 4199153 4199450 -277994214 + AluSx SINE Alu 3 299 -13 271 319 93 24 chr1 4199687 4200018 -277993646 - L1MC5 LINE L1 -60 7901 7516 2073 123 3 0 chr1 4200248 4200540 -277993124 + AluSx SINE Alu 1 293 -19 343 238 0 0 chr1 4200594 4200674 -277992990 - MER116 DNA Mariner 0 80 1 832 153 0 36 chr1 4200710 4200847 -277992817 + FLAM_C SINE Alu 2 133 0 2286 93 0 3 chr1 4200863 4201165 -277992499 + AluSg SINE Alu 1 301 -9 2416 216 68 27 chr1 4201335 4201393 -277992271 - L1MB8 LINE L1 -5 6173 6119 1587 171 42 3 chr1 4201393 4201679 -277991985 + AluJo SINE Alu 1 297 -15 2416 216 68 27 chr1 4201679 4202314 -277991350 - L1MB8 LINE L1 -59 6119 5452 972 218 0 35 chr1 4203872 4204074 -277989590 - AluJo SINE Alu -17 295 101 2499 65 0 0 chr1 4204397 4204706 -277988958 + AluY SINE Alu 1 309 -2 1112 135 5 16 chr1 4204726 4204919 -277988745 + AluSg/x SINE Alu 120 310 0 875 261 52 41 chr1 4206054 4206418 -277987246 - MLT1C LTR MaLR -41 426 59 1284 239 156 5 chr1 4207261 4207692 -277985972 - MLT1D LTR MaLR -3 502 7 663 191 8 46 chr1 4207758 4207909 -277985755 + FLAM_A SINE Alu 2 133 0 1516 136 107 18 chr1 4207912 4208184 -277985480 + AluJb SINE Alu 1 296 -16 2420 77 0 0 chr1 4208186 4208498 -277985166 + AluSx SINE Alu 1 312 0 422 367 58 22 chr1 4210073 4210299 -277983365 - MIR SINE MIR -28 234 1 1138 58 0 0 chr1 4210500 4210637 -277983027 + AluY SINE Alu 1 137 -174 367 243 126 10 chr1 4210964 4211067 -277982597 - MIR SINE MIR -123 139 25 2335 94 3 0 chr1 4212983 4213291 -277980373 - AluSq SINE Alu -4 309 1 1132 153 0 0 chr1 4213574 4213744 -277979920 - AluJb SINE Alu -13 299 130 1700 171 7 14 chr1 4214122 4214415 -277979249 + AluSx SINE Alu 3 293 -19 207 329 130 49 chr1 4215845 4216091 -277977573 + L3 LINE CR1 1301 1566 -11 181 308 33 0 chr1 4217905 4217996 -277975668 - L2 LINE L2 -216 3056 2963 192 286 198 0 chr1 4219330 4219456 -277974208 + L2 LINE L2 2912 3062 -251 469 257 71 0 chr1 4219551 4219691 -277973973 + MIR SINE MIR 35 184 -78 293 305 109 56 chr1 4219720 4220077 -277973587 - L2 LINE L2 -96 3217 2842 2157 89 48 0 chr1 4221842 4222135 -277971529 - AluSg SINE Alu -3 307 1 232 207 17 35 chr1 4225306 4225319 -277968345 - L2 LINE L2 -1 3271 3259 237 65 0 0 chr1 4225319 4225350 -277968314 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 232 207 17 35 chr1 4225350 4225394 -277968270 - L2 LINE L2 -13 3259 3215 514 234 27 24 chr1 4228352 4228515 -277965149 + MIR SINE MIR 25 183 -67 934 241 92 3 chr1 4229324 4229619 -277964045 - L1MB8 LINE L1 0 6178 5858 190 298 123 0 chr1 4229649 4229706 -277963958 - MIR SINE MIR -73 189 126 249 33 0 0 chr1 4230094 4230124 -277963540 + (CAGG)n Simple_repeat Simple_repeat 1 30 0 410 239 246 0 chr1 4231026 4231168 -277962496 + MER5A DNA MER1_type 13 189 0 298 219 0 14 chr1 4231969 4232042 -277961622 + MER94 DNA DNA 44 115 -19 223 185 93 0 chr1 4234670 4234724 -277958940 + MIR SINE MIR 40 98 -164 234 217 33 0 chr1 4235735 4235795 -277957869 + GA-rich Low_complexity Low_complexity 1 62 0 181 245 20 0 chr1 4236079 4236128 -277957536 + L2 LINE L2 3015 3064 -208 237 146 0 0 chr1 4236348 4236396 -277957268 + (CGGA)n Simple_repeat Simple_repeat 4 51 0 40 123 0 0 chr1 4236408 4236700 -277956964 + GC_rich Low_complexity Low_complexity 1 292 0 277 341 78 8 chr1 4238108 4238237 -277955427 + MIR SINE MIR 12 149 -113 1835 163 0 3 chr1 4238313 4238607 -277955057 - AluJb SINE Alu -19 293 1 2163 77 49 3 chr1 4239157 4239443 -277954221 + AluSq SINE Alu 1 299 -14 229 250 44 0 chr1 4240711 4240779 -277952885 - MLT1A1 LTR MaLR -1 456 386 820 174 0 8 chr1 4240784 4240916 -277952748 + FLAM_A SINE Alu 1 131 -2 2010 127 10 16 chr1 4240916 4241230 -277952434 + AluSx SINE Alu 1 312 0 347 274 11 11 chr1 4241266 4241361 -277952303 - MLT1A1 LTR MaLR -86 279 185 1689 155 3 46 chr1 4241491 4241635 -277952029 + AluJo SINE Alu 1 127 -185 2244 107 3 3 chr1 4241635 4241943 -277951721 + AluSg SINE Alu 1 308 -2 1689 155 3 46 chr1 4241943 4242101 -277951563 + AluJo SINE Alu 127 290 -22 2197 69 4 0 chr1 4242110 4242384 -277951280 + AluY SINE Alu 22 296 -15 238 111 89 0 chr1 4242437 4242482 -277951182 - MLT1A1 LTR MaLR -378 50 2 411 273 81 9 chr1 4243930 4244078 -277949586 - MIR SINE MIR -37 171 46 2101 113 3 25 chr1 4244156 4244476 -277949188 - AluSq SINE Alu 0 313 1 395 336 14 2 chr1 4245290 4245429 -277948235 - MIR SINE MIR -63 145 31 225 239 30 60 chr1 4245555 4245622 -277948042 + MIR SINE MIR 83 147 -115 889 176 13 0 chr1 4245625 4245778 -277947886 + FRAM SINE Alu 1 154 -22 360 244 136 29 chr1 4246642 4246849 -277946815 - MIR SINE MIR -21 241 3 213 259 19 44 chr1 4247848 4248006 -277945658 + C-rich Low_complexity Low_complexity 1 154 0 27 29 0 0 chr1 4248130 4248164 -277945500 + GC_rich Low_complexity Low_complexity 1 34 0 204 266 65 0 chr1 4248795 4248868 -277944796 + MIR3 SINE MIR 107 185 -23 21 0 0 0 chr1 4252234 4252255 -277941409 + GC_rich Low_complexity Low_complexity 1 21 0 527 120 0 43 chr1 4252504 4252621 -277941043 + (GGGGA)n Simple_repeat Simple_repeat 2 113 0 297 154 0 0 chr1 4252818 4252870 -277940794 - FLAM SINE Alu -25 108 57 30 0 0 0 chr1 4255100 4255130 -277938534 + GC_rich Low_complexity Low_complexity 1 30 0 28 29 0 0 chr1 4255177 4255212 -277938452 + GC_rich Low_complexity Low_complexity 1 35 0 258 32 0 0 chr1 4256695 4256726 -277936938 + (A)n Simple_repeat Simple_repeat 1 31 0 2393 90 0 0 chr1 4257553 4257863 -277935801 + AluSg SINE Alu 1 310 0 1147 142 0 0 chr1 4259000 4259176 -277934488 + FRAM SINE Alu 1 175 -1 254 239 115 53 chr1 4259227 4259340 -277934324 - MIR SINE MIR -115 147 28 273 173 55 100 chr1 4259814 4259835 -277933829 - L1ME4a LINE L1 -9 6112 6092 2275 78 3 7 chr1 4259835 4260130 -277933534 + AluSq SINE Alu 1 294 -19 273 173 55 100 chr1 4260130 4260218 -277933446 - L1ME4a LINE L1 -29 6092 6008 737 156 14 71 chr1 4260218 4260359 -277933305 + FLAM_C SINE Alu 1 133 0 2315 48 17 3 chr1 4260509 4260801 -277932863 + AluY SINE Alu 1 296 -15 2221 85 0 3 chr1 4261024 4261318 -277932346 - AluSx SINE Alu -19 293 1 23 33 0 0 chr1 4261461 4261491 -277932173 + GC_rich Low_complexity Low_complexity 1 30 0 21 100 0 0 chr1 4261637 4261707 -277931957 + GC_rich Low_complexity Low_complexity 1 70 0 41 0 0 0 chr1 4261874 4261915 -277931749 + GC_rich Low_complexity Low_complexity 1 41 0 540 277 106 0 chr1 4262319 4262486 -277931178 - MIR SINE MIR -45 217 35 1956 90 0 97 chr1 4263412 4263752 -277929912 + AluSg SINE Alu 2 310 0 2320 65 7 3 chr1 4264432 4264726 -277928938 + AluSg SINE Alu 1 295 -15 2141 116 3 0 chr1 4264738 4265031 -277928633 + AluSq SINE Alu 1 294 -19 331 216 41 0 chr1 4265721 4265818 -277927846 - L1MB7 LINE L1 0 6184 6084 802 171 0 14 chr1 4266016 4266156 -277927508 - FLAM_C SINE Alu 0 143 6 1292 196 117 7 chr1 4266385 4266666 -277926998 - AluJo SINE Alu 0 312 1 2227 96 0 26 chr1 4266666 4266978 -277926686 - AluY SINE Alu -7 304 1 1613 116 6 84 chr1 4266978 4267191 -277926473 - AluJo SINE Alu -8 304 121 1916 149 0 0 chr1 4267191 4267467 -277926197 + AluSx SINE Alu 21 296 -16 1613 116 6 84 chr1 4267467 4267564 -277926100 - AluJo SINE Alu -191 121 18 918 162 0 0 chr1 4267574 4267722 -277925942 + AluSg/x SINE Alu 155 302 -8 369 0 0 0 chr1 4267761 4267802 -277925862 + (TG)n Simple_repeat Simple_repeat 2 42 0 687 172 41 41 chr1 4267803 4267948 -277925716 - AluJb SINE Alu 0 312 168 1605 141 4 38 chr1 4267948 4268076 -277925588 - AluSx SINE Alu -51 261 145 2279 99 3 6 chr1 4268076 4268389 -277925275 - AluSp SINE Alu -1 312 1 1605 141 4 38 chr1 4268389 4268522 -277925142 - AluSx SINE Alu -167 145 9 2132 112 0 19 chr1 4268527 4268841 -277924823 - AluSx SINE Alu -4 308 1 998 162 134 69 chr1 4268885 4268944 -277924720 + AluJo SINE Alu 37 91 -221 2405 82 0 0 chr1 4268944 4269247 -277924417 + AluY SINE Alu 1 303 -8 998 162 134 69 chr1 4269247 4269434 -277924230 + AluJo SINE Alu 91 299 -13 1227 206 14 0 chr1 4269482 4269700 -277923964 - AluJo SINE Alu -91 221 1 2471 66 0 3 chr1 4269707 4270012 -277923652 - AluY SINE Alu -7 304 1 229 302 203 0 chr1 4270377 4270569 -277923095 + MER112 DNA MER1_type 8 238 -22 455 288 107 42 chr1 4270617 4270711 -277922953 + MIR SINE MIR 19 105 -157 781 200 0 0 chr1 4270711 4270841 -277922823 + FLAM_A SINE Alu 1 130 -3 455 288 107 42 chr1 4270841 4270961 -277922703 + MIR SINE MIR 105 247 -15 2033 118 7 3 chr1 4271177 4271473 -277922191 - AluSx SINE Alu -15 297 1 1424 158 22 0 chr1 4271501 4271723 -277921941 + AluJb SINE Alu 71 297 -15 429 340 63 0 chr1 4273790 4273949 -277919715 + MIR SINE MIR 50 218 -44 2214 104 0 3 chr1 4274179 4274487 -277919177 + AluSg SINE Alu 1 307 -3 2201 72 7 30 chr1 4275142 4275447 -277918217 - AluSx SINE Alu -14 298 1 2192 93 0 10 chr1 4277488 4277788 -277915876 + AluSp SINE Alu 1 297 -16 2341 76 3 3 chr1 4277792 4278096 -277915568 + AluSq SINE Alu 1 304 -9 206 297 54 0 chr1 4279663 4279737 -277913927 - L2 LINE L2 -333 2939 2862 1078 294 123 24 chr1 4279865 4280421 -277913243 - L2 LINE L2 -718 2596 2096 1812 164 17 0 chr1 4280421 4280719 -277912945 + AluJb SINE Alu 1 303 -9 2268 62 0 33 chr1 4280719 4281025 -277912639 + AluSc SINE Alu 1 297 -12 1078 294 123 24 chr1 4281025 4281167 -277912497 - L2 LINE L2 -1217 2097 1828 471 237 7 65 chr1 4281618 4281757 -277911907 + HAL1 LINE L1 772 902 -1605 1055 96 13 13 chr1 4281762 4281918 -277911746 + AluSg/x SINE Alu 140 295 -17 365 216 126 32 chr1 4281922 4282112 -277911552 + HAL1 LINE L1 902 1109 -1398 896 134 0 8 chr1 4282119 4282253 -277911411 + FLAM_C SINE Alu 1 133 0 2254 103 6 0 chr1 4282258 4282569 -277911095 + AluSp SINE Alu 1 313 0 1429 228 89 48 chr1 4282574 4282659 -277911005 + HAL1 LINE L1 1195 1275 -1232 2135 99 26 7 chr1 4282659 4282962 -277910702 + AluSc SINE Alu 1 309 0 1647 96 0 0 chr1 4282967 4283187 -277910477 + AluSg/x SINE Alu 85 304 -8 1429 228 89 48 chr1 4283187 4283600 -277910064 + HAL1 LINE L1 1278 1720 -787 305 98 0 0 chr1 4284097 4284148 -277909516 - AluSx SINE Alu 0 302 252 1450 107 0 0 chr1 4284150 4284347 -277909317 - AluSx SINE Alu -115 197 1 196 260 62 73 chr1 4285834 4285930 -277907734 + MER5B DNA MER1_type 22 116 -62 269 262 80 91 chr1 4287817 4288004 -277905660 + L2 LINE L2 3015 3199 -73 24 0 0 0 chr1 4288202 4288226 -277905438 + GC_rich Low_complexity Low_complexity 1 24 0 216 180 0 40 chr1 4288862 4288912 -277904752 - MIR SINE MIR -114 148 101 2037 89 43 0 chr1 4288979 4289260 -277904404 + AluSx SINE Alu 1 293 -19 203 247 136 25 chr1 4289843 4289924 -277903740 + MIR SINE MIR 57 146 -62 226 297 10 40 chr1 4290581 4290682 -277902982 + MIR SINE MIR 46 143 -65 1987 66 80 0 chr1 4291835 4292109 -277901555 + AluSx SINE Alu 1 296 -16 283 253 72 0 chr1 4292261 4292344 -277901320 + MIR SINE MIR 36 124 -84 1570 130 123 4 chr1 4292760 4293029 -277900635 - AluJb SINE Alu -11 301 1 186 71 0 0 chr1 4293029 4293057 -277900607 + (T)n Simple_repeat Simple_repeat 1 28 0 698 152 0 9 chr1 4293095 4293207 -277900457 - FLAM_C SINE Alu -32 111 1 2347 57 10 3 chr1 4293313 4293609 -277900055 - AluY SINE Alu -13 298 1 2451 62 3 0 chr1 4293708 4294012 -277899652 - AluSp SINE Alu -8 305 1 205 282 0 24 chr1 4294054 4294139 -277899525 - MIR SINE MIR -30 232 150 183 275 0 0 chr1 4294253 4294293 -277899371 - L2 LINE L2 -3 3310 3271 1577 103 117 72 chr1 4294393 4294528 -277899136 + AluSx SINE Alu 1 128 -184 2291 94 0 7 chr1 4294528 4294837 -277898827 + AluSg SINE Alu 1 307 -3 1577 103 117 72 chr1 4294837 4294991 -277898673 + AluSx SINE Alu 128 303 -9 225 283 100 29 chr1 4295059 4295115 -277898549 - L2 LINE L2 -236 3036 2985 1871 160 3 7 chr1 4295115 4295421 -277898243 + AluJo SINE Alu 1 305 -7 225 283 100 29 chr1 4295421 4295571 -277898093 - L2 LINE L2 -287 2985 2817 200 159 23 45 chr1 4295571 4295659 -277898005 + G-rich Low_complexity Low_complexity 1 86 0 1832 148 9 28 chr1 4295856 4295988 -277897676 + AluJo SINE Alu 1 134 -178 180 0 0 0 chr1 4295988 4296008 -277897656 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1832 148 9 28 chr1 4296008 4296193 -277897471 + AluJo SINE Alu 134 312 0 227 331 117 7 chr1 4296194 4296280 -277897384 - L2 LINE L2 -1914 1400 1325 1046 182 0 0 chr1 4296280 4296445 -277897219 + FRAM SINE Alu 1 165 -1 227 331 117 7 chr1 4296445 4296512 -277897152 - L2 LINE L2 -1989 1325 1230 743 184 209 8 chr1 4296512 4297020 -277896644 - LTR50 LTR ERVL -2 793 29 243 291 55 27 chr1 4297080 4297190 -277896474 - L2 LINE L2 -2194 1120 1008 431 262 29 0 chr1 4297257 4297360 -277896304 + MER5A DNA MER1_type 4 109 -80 205 300 0 0 chr1 4297400 4297470 -277896194 - L2 LINE L2 -2392 922 853 227 282 94 0 chr1 4297473 4297558 -277896106 - L2 LINE L2 -2731 583 491 2141 107 0 7 chr1 4300256 4300556 -277893108 + AluSg SINE Alu 1 298 -12 2205 119 0 0 chr1 4301493 4301805 -277891859 - AluSp SINE Alu -1 312 1 2018 147 3 6 chr1 4301806 4302118 -277891546 - AluSx SINE Alu -1 311 1 2333 80 0 7 chr1 4302121 4302422 -277891242 - AluY SINE Alu -12 299 1 1995 91 4 0 chr1 4302427 4302692 -277890972 - AluY SINE Alu -8 303 38 1671 183 21 3 chr1 4302692 4302981 -277890683 - AluJo SINE Alu -18 294 1 181 271 125 88 chr1 4303009 4303201 -277890463 - MIR3 SINE MIR -1 207 9 1952 123 7 0 chr1 4303359 4303644 -277890020 - AluJb SINE Alu -7 305 19 1206 202 39 62 chr1 4303835 4303963 -277889701 + AluJb SINE Alu 1 130 -172 2288 74 7 0 chr1 4303963 4304262 -277889402 + AluSp SINE Alu 1 301 -12 1206 202 39 62 chr1 4304262 4304440 -277889224 + AluJb SINE Alu 130 300 -2 2053 121 0 3 chr1 4304873 4305170 -277888494 - AluSx SINE Alu -16 296 1 1729 176 14 3 chr1 4305239 4305535 -277888129 + AluJo SINE Alu 1 299 -13 2147 120 0 3 chr1 4305570 4305870 -277887794 - AluSx SINE Alu -13 299 1 985 118 0 40 chr1 4305870 4305883 -277887781 - AluSq/x SINE Alu -167 146 134 2470 50 0 25 chr1 4305883 4306200 -277887464 - AluY SINE Alu -2 309 1 2318 78 3 10 chr1 4306200 4306508 -277887156 - AluSg SINE Alu -4 306 1 985 118 0 40 chr1 4306508 4306645 -277887019 - AluSq/x SINE Alu -177 136 1 2049 87 7 0 chr1 4306933 4307210 -277886454 + AluSp SINE Alu 27 305 -8 2219 98 0 3 chr1 4307643 4307948 -277885716 - AluSq SINE Alu -9 304 1 925 165 24 0 chr1 4308007 4308171 -277885493 - AluJo SINE Alu -10 302 135 2272 51 20 7 chr1 4308501 4308793 -277884871 + AluSp SINE Alu 2 297 -16 26 0 0 0 chr1 4309026 4309052 -277884612 + AT_rich Low_complexity Low_complexity 1 26 0 891 135 0 0 chr1 4309052 4309178 -277884486 - AluJo SINE Alu -186 126 1 1495 164 95 4 chr1 4309254 4309528 -277884136 + AluSx SINE Alu 1 299 -13 2147 123 0 0 chr1 4309943 4310253 -277883411 - AluY SINE Alu -1 310 1 2129 117 7 0 chr1 4310256 4310554 -277883110 - AluSx SINE Alu -6 306 7 2224 78 7 20 chr1 4314635 4314941 -277878723 - AluSx SINE Alu -10 302 1 1962 81 23 55 chr1 4315218 4315528 -277878136 + AluSc SINE Alu 1 300 -9 40 59 0 0 chr1 4317673 4317741 -277875923 + GC_rich Low_complexity Low_complexity 1 68 0 29 90 0 0 chr1 4317869 4317947 -277875717 + GC_rich Low_complexity Low_complexity 1 78 0 377 270 157 36 chr1 4319483 4319885 -277873779 + L2 LINE L2 2495 3030 -283 750 180 0 0 chr1 4319945 4320067 -277873597 - FLAM_A SINE Alu -7 126 5 591 290 55 19 chr1 4320703 4320939 -277872725 + MIR SINE MIR 10 256 -6 226 204 59 13 chr1 4321560 4321712 -277871952 + (TCCA)n Simple_repeat Simple_repeat 4 162 0 439 231 18 0 chr1 4321735 4321904 -277871760 + (TCCA)n Simple_repeat Simple_repeat 4 175 0 716 127 42 0 chr1 4321961 4322126 -277871538 + (TCCA)n Simple_repeat Simple_repeat 4 175 0 989 98 44 10 chr1 4322137 4323223 -277870441 + (TCCA)n Simple_repeat Simple_repeat 1 1300 0 269 236 0 28 chr1 4323298 4323370 -277870294 + (TCTCTG)n Simple_repeat Simple_repeat 5 74 0 234 301 0 72 chr1 4323325 4323518 -277870146 + CT-rich Low_complexity Low_complexity 1 179 0 * 283 309 73 8 chr1 4323924 4324047 -277869617 - MIR SINE MIR -37 225 95 2524 50 0 0 chr1 4324182 4324484 -277869180 + AluY SINE Alu 1 302 -9 280 264 27 73 chr1 4324971 4325081 -277868583 + MIR SINE MIR 43 147 -115 771 173 87 7 chr1 4325081 4325256 -277868408 + AluJb SINE Alu 121 307 0 237 200 33 33 chr1 4327435 4327495 -277866169 + MIR SINE MIR 39 98 -164 2138 126 7 0 chr1 4328539 4328848 -277864816 - AluSx SINE Alu 0 312 2 226 287 50 69 chr1 4330002 4330103 -277863561 - MIR SINE MIR -46 216 118 390 318 60 7 chr1 4330194 4330345 -277863319 - MIR SINE MIR -70 192 34 248 269 39 62 chr1 4330698 4330828 -277862836 - L2 LINE L2 -539 2775 2649 204 252 48 19 chr1 4332505 4332608 -277861056 + (TCTCTG)n Simple_repeat Simple_repeat 1 106 0 255 304 0 39 chr1 4332649 4332751 -277860913 + CT-rich Low_complexity Low_complexity 4 101 0 2227 107 3 16 chr1 4335169 4335486 -277858178 - AluSp SINE Alu 0 313 1 290 253 55 55 chr1 4335530 4335640 -277858024 - MIR SINE MIR -63 145 39 260 330 0 22 chr1 4336394 4336485 -277857179 + CT-rich Low_complexity Low_complexity 2 90 0 239 284 0 12 chr1 4338147 4338228 -277855436 + GA-rich Low_complexity Low_complexity 1 80 0 288 0 0 0 chr1 4338326 4338358 -277855306 + (TG)n Simple_repeat Simple_repeat 1 32 0 2129 72 11 18 chr1 4338358 4338555 -277855109 - AluSc SINE Alu -33 276 80 2716 16 0 0 chr1 4338555 4338860 -277854804 - AluYa5 SINE Alu -6 305 1 2129 72 11 18 chr1 4338860 4338940 -277854724 - AluSc SINE Alu -229 80 1 496 200 157 0 chr1 4338942 4339057 -277854607 - FLAM_A SINE Alu -9 133 1 236 235 94 0 chr1 4339546 4339631 -277854033 - MER113 DNA MER1_type? -419 102 10 510 260 164 11 chr1 4340498 4340675 -277852989 - MIR SINE MIR -8 254 51 2180 118 3 0 chr1 4341027 4341331 -277852333 - AluSx SINE Alu -7 305 1 192 125 0 0 chr1 4342796 4342828 -277850836 + (CGG)n Simple_repeat Simple_repeat 3 34 0 261 0 0 0 chr1 4343729 4343758 -277849906 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 2122 82 0 7 chr1 4343758 4344039 -277849625 - AluSx SINE Alu -33 279 1 313 326 36 22 chr1 4344852 4344990 -277848674 + MIR SINE MIR 58 197 -65 195 220 0 0 chr1 4345174 4345224 -277848440 + (TG)n Simple_repeat Simple_repeat 2 51 0 313 270 14 0 chr1 4345332 4345406 -277848258 + MIR3 SINE MIR 114 188 -20 326 370 110 37 chr1 4345897 4346224 -277847440 - L2 LINE L2 -5 3267 2917 200 170 43 21 chr1 4346925 4346972 -277846692 + CT-rich Low_complexity Low_complexity 4 51 0 1109 145 15 4 chr1 4346976 4347958 -277845706 + (TCCA)n Simple_repeat Simple_repeat 1 1171 0 195 42 0 0 chr1 4347967 4347991 -277845673 + (TTCC)n Simple_repeat Simple_repeat 3 26 0 227 293 0 0 chr1 4348508 4348590 -277845074 + GA-rich Low_complexity Low_complexity 3 84 0 23 33 0 0 chr1 4348741 4348771 -277844893 + GC_rich Low_complexity Low_complexity 1 30 0 359 237 93 10 chr1 4349096 4349193 -277844471 - MIR SINE MIR -63 145 41 243 266 16 0 chr1 4349443 4349507 -277844157 + (TG)n Simple_repeat Simple_repeat 2 66 0 203 270 149 0 chr1 4349868 4349942 -277843722 - MIR SINE MIR -65 143 59 465 297 65 19 chr1 4351761 4351916 -277841748 - MIR SINE MIR -90 172 11 198 234 169 13 chr1 4352272 4352349 -277841315 + MIR SINE MIR 4 92 -170 217 183 24 122 chr1 4353215 4353297 -277840367 + MIR SINE MIR 62 135 -73 1731 130 87 0 chr1 4354253 4354529 -277839135 + AluJo SINE Alu 1 300 -12 533 333 78 19 chr1 4354597 4354918 -277838746 - L2 LINE L2 -2 3270 2931 1134 217 120 69 chr1 4355614 4355952 -277837712 - MLT1C LTR MaLR -2 465 146 210 37 0 0 chr1 4355952 4355979 -277837685 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1686 141 7 4 chr1 4355983 4356252 -277837412 - AluSx SINE Alu -42 270 1 1906 122 7 10 chr1 4356259 4356584 -277837080 - AluSx SINE Alu 0 324 1 306 0 0 0 chr1 4356584 4356618 -277837046 + (TTA)n Simple_repeat Simple_repeat 2 35 0 1453 165 137 4 chr1 4356618 4356867 -277836797 - AluJb SINE Alu -18 284 3 1134 217 120 69 chr1 4356867 4356946 -277836718 - MLT1C LTR MaLR -327 140 10 371 241 152 18 chr1 4356954 4357066 -277836598 + MIR SINE MIR 76 202 -60 268 176 0 0 chr1 4357107 4357158 -277836506 - MER5A DNA MER1_type -77 112 62 2302 94 3 0 chr1 4357158 4357465 -277836199 - AluSc SINE Alu -1 308 1 2601 180 25 44 chr1 4357807 4357871 -277835793 - L1MB2 LINE L1 -7 6164 6100 1212 166 0 0 chr1 4357871 4358046 -277835618 + FAM SINE Alu 1 175 0 2165 82 32 0 chr1 4358049 4358330 -277835334 + AluSq SINE Alu 1 290 -23 257 0 30 0 chr1 4358334 4358367 -277835297 + (CAA)n Simple_repeat Simple_repeat 2 35 0 2601 180 25 44 chr1 4358367 4358883 -277834781 - L1MB2 LINE L1 -76 6095 5586 696 206 221 32 chr1 4359071 4359187 -277834477 - MER45C DNA AcHobo -628 953 860 1971 154 0 3 chr1 4359187 4359492 -277834172 - AluSx SINE Alu -8 304 1 696 206 221 32 chr1 4359492 4359628 -277834036 - MER45C DNA AcHobo -721 860 653 599 190 0 49 chr1 4359717 4359859 -277833805 - MER45C DNA AcHobo -764 189 55 219 296 114 0 chr1 4359863 4359951 -277833713 + MIR SINE MIR 52 149 -113 747 199 8 0 chr1 4359953 4360084 -277833580 + AluJo SINE Alu 1 132 -180 1741 151 3 7 chr1 4360179 4360463 -277833201 + AluJb SINE Alu 1 283 -29 2080 116 10 7 chr1 4361546 4361847 -277831817 - AluSx SINE Alu 0 312 11 226 274 145 16 chr1 4361855 4361979 -277831685 + MIR SINE MIR 49 188 -74 242 260 106 16 chr1 4363876 4363999 -277829665 - L2 LINE L2 -1 3271 3138 938 168 6 12 chr1 4364512 4364673 -277828991 + AluJo SINE Alu 123 282 -30 270 0 0 0 chr1 4364675 4364705 -277828959 + (GA)n Simple_repeat Simple_repeat 1 30 0 494 316 84 85 chr1 4364722 4365180 -277828484 + L1MEc LINE L1 982 1469 -1107 310 297 68 7 chr1 4365201 4365349 -277828315 + HAL1b LINE L1 386 542 -806 225 259 35 35 chr1 4367569 4367654 -277826010 - MIR3 SINE MIR -54 154 70 2009 136 7 0 chr1 4370079 4370380 -277823284 - AluSx SINE Alu -9 303 1 192 261 82 67 chr1 4370642 4370776 -277822888 - L2 LINE L2 -161 3111 2976 204 205 0 0 chr1 4373437 4373476 -277820188 + CT-rich Low_complexity Low_complexity 1 39 0 3160 217 42 40 chr1 4373793 4373857 -277819807 - L1MB7 LINE L1 -1 6183 6121 2213 81 0 10 chr1 4373857 4374154 -277819510 + AluSx SINE Alu 1 294 -18 3160 217 42 40 chr1 4374154 4374488 -277819176 - L1MB7 LINE L1 -63 6121 5789 2399 77 10 0 chr1 4374488 4374798 -277818866 - AluSq SINE Alu 0 313 1 3160 217 42 40 chr1 4374798 4375278 -277818386 - L1MB7 LINE L1 -395 5789 5302 338 314 41 8 chr1 4375426 4375547 -277818117 + MIR3 SINE MIR 13 137 -71 201 320 20 40 chr1 4375636 4375736 -277817928 - MIR3 SINE MIR -108 100 3 1586 116 0 4 chr1 4376669 4376894 -277816770 - AluSc SINE Alu -16 293 70 1334 94 0 0 chr1 4376894 4377064 -277816600 - AluSc SINE Alu -139 170 1 653 123 98 33 chr1 4377074 4377196 -277816468 - FLAM_C SINE Alu 0 133 4 341 322 90 0 chr1 4377248 4377425 -277816239 - L1MEd LINE L1 -3316 2813 2621 2173 122 0 0 chr1 4377425 4377721 -277815943 + AluSx SINE Alu 1 296 -16 381 297 0 11 chr1 4377722 4377813 -277815851 + L1MC4 LINE L1 6614 6703 -1339 301 246 0 0 chr1 4377837 4377894 -277815770 - L1MC4 LINE L1 -1339 6703 6647 312 321 32 23 chr1 4377921 4378188 -277815476 - L1MEd LINE L1 -3526 2603 2331 1403 112 225 4 chr1 4378188 4378437 -277815227 + AluYb8 SINE Alu 1 304 -14 312 321 32 23 chr1 4378437 4378515 -277815149 - L1MEd LINE L1 -3798 2331 2255 3650 186 43 52 chr1 4378515 4378588 -277815076 - L1MB7 LINE L1 0 6253 6181 2297 95 0 0 chr1 4378588 4378883 -277814781 + AluSq SINE Alu 1 295 -18 3650 186 43 52 chr1 4378883 4379182 -277814482 - L1MB7 LINE L1 -72 6181 5881 2013 124 0 10 chr1 4379182 4379472 -277814192 - AluJb SINE Alu -5 307 21 3650 186 43 52 chr1 4379472 4380035 -277813629 - L1MB7 LINE L1 -372 5881 5315 599 275 0 0 chr1 4380035 4380155 -277813509 - FLAM_A SINE Alu -13 120 1 3650 186 43 52 chr1 4380155 4380495 -277813169 - L1MB7 LINE L1 -938 5315 2113 455 256 33 92 chr1 4380842 4381306 -277812358 - L1MEd LINE L1 -4751 1559 955 427 328 35 39 chr1 4381319 4381551 -277812113 - L2 LINE L2 0 3313 3083 1764 213 97 8 chr1 4381679 4382153 -277811511 - MLT1E2 LTR MaLR 0 626 111 297 219 0 0 chr1 4382211 4382275 -277811389 - MLT1E2 LTR MaLR -582 72 9 1515 48 0 68 chr1 4382348 4382555 -277811109 - AluY SINE Alu -118 193 1 1911 91 0 0 chr1 4382560 4382803 -277810861 - AluSx SINE Alu -18 294 52 357 334 63 88 chr1 4382803 4382926 -277810738 - L1MEd LINE L1 -5197 922 797 1202 107 11 165 chr1 4382926 4383198 -277810466 - MER30 DNA MER1_type 0 230 1 357 334 63 88 chr1 4383198 4383319 -277810345 - L1MEd LINE L1 -5322 797 674 2389 60 0 17 chr1 4383319 4383618 -277810046 - AluSg SINE Alu -16 294 1 357 334 63 88 chr1 4383618 4383770 -277809894 - L1MEd LINE L1 -5445 674 535 326 370 47 53 chr1 4383823 4384142 -277809522 - L1MEd LINE L1 -5693 426 110 1762 159 7 3 chr1 4384153 4384443 -277809221 - AluJb SINE Alu -21 291 1 624 247 64 70 chr1 4385874 4386029 -277807635 - MLT1C LTR MaLR -125 342 188 2328 102 0 0 chr1 4386029 4386334 -277807330 - AluSx SINE Alu -7 305 1 2249 112 0 0 chr1 4386334 4386638 -277807026 - AluSx SINE Alu -8 304 1 624 247 64 70 chr1 4386638 4386793 -277806871 - MLT1C LTR MaLR -277 190 33 336 205 19 0 chr1 4388653 4388809 -277804855 + (TCCA)n Simple_repeat Simple_repeat 4 162 0 205 246 16 0 chr1 4388811 4388872 -277804792 + CT-rich Low_complexity Low_complexity 3 64 0 356 185 35 6 chr1 4388877 4389050 -277804614 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 342 182 47 0 chr1 4389085 4389233 -277804431 + (TCCA)n Simple_repeat Simple_repeat 4 158 0 456 170 38 0 chr1 4389307 4389632 -277804032 + (TCCA)n Simple_repeat Simple_repeat 1 337 0 423 178 52 0 chr1 4389679 4390011 -277803653 + (TCCA)n Simple_repeat Simple_repeat 1 349 0 527 182 38 5 chr1 4390042 4390772 -277802892 + (TCCA)n Simple_repeat Simple_repeat 1 754 0 326 321 191 12 chr1 4399416 4399746 -277793918 + L2 LINE L2 2380 2768 -546 581 276 69 69 chr1 4399803 4400151 -277793513 + L2 LINE L2 2931 3278 -35 239 232 0 29 chr1 4401655 4401724 -277791940 + G-rich Low_complexity Low_complexity 2 68 0 575 284 57 44 chr1 4402487 4402716 -277790948 + MIR SINE MIR 17 248 -14 402 354 32 0 chr1 4402741 4402899 -277790765 - MIR SINE MIR -20 242 80 2161 106 0 13 chr1 4407584 4407885 -277785779 + AluSq SINE Alu 1 297 -16 287 329 73 18 chr1 4408178 4408342 -277785322 - MIR SINE MIR -82 180 8 261 0 0 0 chr1 4408853 4408882 -277784782 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1730 139 55 45 chr1 4408903 4409039 -277784625 + AluJo SINE Alu 1 134 -178 1771 147 25 73 chr1 4409039 4409366 -277784298 + AluJb SINE Alu 2 312 0 1730 139 55 45 chr1 4409366 4409538 -277784126 + AluJo SINE Alu 134 312 0 205 347 76 18 chr1 4411751 4411914 -277781750 - MIR SINE MIR -58 150 18 2096 106 20 0 chr1 4412758 4413050 -277780614 - AluSx SINE Alu -12 300 3 273 271 0 0 chr1 4413152 4413211 -277780453 + (TG)n Simple_repeat Simple_repeat 2 60 0 186 331 76 45 chr1 4415068 4415225 -277778439 + L3 LINE CR1 1280 1441 -136 233 330 104 0 chr1 4415631 4415693 -277777971 + L2 LINE L2 3152 3206 -66 1598 244 110 2 chr1 4415693 4416111 -277777553 + MLT1C LTR MaLR 1 463 -4 233 330 104 0 chr1 4416111 4416154 -277777510 + L2 LINE L2 3206 3268 -4 264 232 29 0 chr1 4416835 4416904 -277776760 - Charlie8 DNA MER1_type -2220 197 127 502 260 27 0 chr1 4417511 4417657 -277776007 - L1MC4a LINE L1 -1846 5962 5813 1394 153 66 35 chr1 4417693 4418040 -277775624 - L1MB3 LINE L1 -3 6180 5823 1836 128 4 0 chr1 4418050 4418315 -277775349 - AluSx SINE Alu -13 299 34 471 278 83 14 chr1 4418471 4418687 -277774977 + L2 LINE L2 2435 2665 -649 262 241 157 0 chr1 4418698 4418781 -277774883 + MER5A DNA MER1_type 11 106 -83 412 254 25 33 chr1 4418842 4418964 -277774700 + L2 LINE L2 2668 2788 -526 180 315 22 11 chr1 4419015 4419104 -277774560 + L2 LINE L2 2917 3006 -307 818 254 62 102 chr1 4419169 4419689 -277773975 + MLT1D LTR MaLR 1 499 -6 2175 96 0 7 chr1 4420385 4420677 -277772987 - AluSg SINE Alu -15 295 6 251 232 158 0 chr1 4420992 4421074 -277772590 + MIR SINE MIR 119 213 -49 882 185 29 0 chr1 4421475 4421648 -277772016 - MER58A DNA MER1_type 0 224 47 977 133 118 0 chr1 4421655 4421866 -277771798 + L1MB4 LINE L1 5945 6180 0 673 372 122 18 chr1 4421907 4422466 -277771198 - L3 LINE CR1 -627 950 334 2165 101 20 0 chr1 4422611 4422908 -277770756 - AluSx SINE Alu -9 303 1 352 329 81 33 chr1 4426721 4426931 -277766733 + MIR SINE MIR 12 231 -31 223 309 0 0 chr1 4429111 4429179 -277764485 - MIR SINE MIR -117 91 24 1960 146 0 3 chr1 4429543 4429838 -277763826 - AluSx SINE Alu -18 294 1 318 257 29 29 chr1 4433281 4433386 -277760278 + MER5A DNA MER1_type 33 137 -52 199 254 24 146 chr1 4433284 4433449 -277760215 - MER5A DNA MER1_type -24 165 21 * 2034 185 57 35 chr1 4433662 4433881 -277759783 + L1MB8 LINE L1 5614 5827 -351 2255 98 0 3 chr1 4433881 4434176 -277759488 + AluSx SINE Alu 7 300 -12 2034 185 57 35 chr1 4434176 4434270 -277759394 + L1MB8 LINE L1 5827 5917 -261 2007 95 32 18 chr1 4434270 4434555 -277759109 + AluSg SINE Alu 8 296 -14 2034 185 57 35 chr1 4434555 4434787 -277758877 + L1MB8 LINE L1 5917 6172 -6 205 384 20 10 chr1 4435005 4435104 -277758560 + L2 LINE L2 3168 3267 -5 2085 88 50 17 chr1 4435258 4435555 -277758109 - AluSp SINE Alu -6 307 1 21 0 0 0 chr1 4435728 4435749 -277757915 + AT_rich Low_complexity Low_complexity 1 21 0 508 212 38 2 chr1 4435909 4436092 -277757572 + MER20 DNA MER1_type 1 219 0 2308 86 0 10 chr1 4436663 4436966 -277756698 - AluSc SINE Alu -9 300 1 2024 148 3 0 chr1 4438096 4438407 -277755257 + AluJo SINE Alu 1 312 0 430 307 57 0 chr1 4439064 4439204 -277754460 - MIR SINE MIR -68 194 47 1422 237 58 29 chr1 4439263 4439412 -277754252 + MLT1C LTR MaLR 8 151 -316 1754 177 10 3 chr1 4439412 4439717 -277753947 - AluJb SINE Alu -5 307 1 1422 237 58 29 chr1 4439717 4440014 -277753650 + MLT1C LTR MaLR 151 467 0 425 294 107 19 chr1 4440695 4440987 -277752677 - L2 LINE L2 -238 3075 2750 2388 69 0 0 chr1 4441241 4441532 -277752132 + AluSx SINE Alu 1 291 -21 2097 134 0 0 chr1 4441934 4442232 -277751432 + AluSx SINE Alu 5 302 -10 407 230 75 12 chr1 4442378 4442553 -277751111 - MLT1C LTR MaLR 0 390 273 2105 94 31 44 chr1 4442553 4443002 -277750662 + MER51A LTR ERV1 1 534 -100 1706 110 0 0 chr1 4443002 4443238 -277750426 - AluSq SINE Alu -77 236 1 2105 94 31 44 chr1 4443238 4443338 -277750326 + MER51A LTR ERV1 534 634 0 571 201 35 46 chr1 4443400 4443513 -277750151 - MLT1C LTR MaLR -290 177 65 1491 169 143 0 chr1 4443513 4443786 -277749878 - AluJo SINE Alu 0 312 1 571 201 35 46 chr1 4443786 4443846 -277749818 - MLT1C LTR MaLR -402 65 6 404 318 9 0 chr1 4444220 4444327 -277749337 + L2 LINE L2 3205 3312 -1 806 101 40 20 chr1 4444669 4444817 -277748847 - MER53 DNA DNA -2 187 37 1846 158 0 13 chr1 4445143 4445446 -277748218 - AluJo SINE Alu -13 299 1 1932 137 6 19 chr1 4445449 4445764 -277747900 - AluSx SINE Alu -1 311 1 363 326 42 5 chr1 4446887 4447080 -277746584 + L1MC4a LINE L1 5725 5924 -1884 195 291 36 0 chr1 4447781 4447836 -277745828 + L2 LINE L2 3211 3267 -5 292 326 49 62 chr1 4448120 4448344 -277745320 + L2 LINE L2 3084 3304 -9 225 319 129 0 chr1 4449051 4449167 -277744497 + MIR SINE MIR 14 144 -118 269 265 43 26 chr1 4449802 4449919 -277743745 + L2 LINE L2 3186 3304 -9 253 305 63 52 chr1 4453079 4453253 -277740411 + L2 LINE L2 2915 3090 -182 846 264 60 35 chr1 4453344 4453758 -277739906 + MLT1H LTR MaLR 29 579 -16 183 333 14 0 chr1 4455037 4455106 -277738558 - MIR SINE MIR -58 150 81 232 102 41 0 chr1 4457202 4457251 -277736413 + (CAGA)n Simple_repeat Simple_repeat 1 51 0 1177 269 147 14 chr1 4457555 4458072 -277735592 + MLT1E LTR MaLR 6 591 -2 287 309 12 0 chr1 4458555 4458639 -277735025 + L2 LINE L2 3198 3282 -31 1669 140 0 76 chr1 4458991 4459306 -277734358 + AluJo SINE Alu 21 311 -1 2361 69 0 10 chr1 4459409 4459715 -277733949 + AluY SINE Alu 1 303 -8 346 140 0 0 chr1 4459725 4459782 -277733882 + AluS SINE Alu 1 57 -251 521 236 9 9 chr1 4460382 4460492 -277733172 - MER5A DNA MER1_type -79 110 1 945 213 20 0 chr1 4460525 4460722 -277732942 + MER58A DNA MER1_type 24 224 0 1803 282 169 35 chr1 4460732 4461065 -277732599 + L2 LINE L2 1329 1616 -1697 2261 107 0 0 chr1 4461065 4461365 -277732299 - AluSx SINE Alu -12 300 1 1803 282 169 35 chr1 4461365 4462777 -277730887 + L2 LINE L2 1616 3313 0 180 329 7 79 chr1 4463699 4463839 -277729825 - MIR SINE MIR -123 139 10 309 236 49 73 chr1 4463920 4464043 -277729621 - L1MC4 LINE L1 -4 8038 7919 661 226 10 0 chr1 4464070 4464374 -277729290 + (CA)n Simple_repeat Simple_repeat 1 307 0 697 311 126 17 chr1 4464390 4464907 -277728757 - L1MC4 LINE L1 -128 7914 7342 283 132 29 29 chr1 4464914 4464982 -277728682 + CT-rich Low_complexity Low_complexity 3 70 0 2159 112 13 0 chr1 4464984 4465287 -277728377 - AluSc SINE Alu -2 307 1 1767 180 0 7 chr1 4465676 4465981 -277727683 - AluJb SINE Alu -9 303 1 249 167 33 50 chr1 4466112 4466172 -277727492 + MIR3 SINE MIR 109 167 -41 262 238 0 0 chr1 4466578 4466641 -277727023 + MLT1H LTR MaLR 29 91 -458 570 208 0 0 chr1 4466641 4466790 -277726874 + (CA)n Simple_repeat Simple_repeat 1 149 0 301 260 0 39 chr1 4466793 4466870 -277726794 - L1MCa LINE L1 -4358 2068 1995 536 188 8 0 chr1 4466874 4467002 -277726662 + (CA)n Simple_repeat Simple_repeat 2 130 0 324 278 14 0 chr1 4467003 4467075 -277726589 - L1MCa LINE L1 -4359 2067 1995 266 180 16 0 chr1 4467076 4467137 -277726527 + (CA)n Simple_repeat Simple_repeat 2 63 0 236 196 0 0 chr1 4467170 4467216 -277726448 + MLT1I LTR MaLR 95 140 -269 404 190 41 22 chr1 4467813 4467925 -277725739 + MIR SINE MIR 46 153 -58 1881 96 4 15 chr1 4468282 4468552 -277725112 - AluSc SINE Alu -8 301 35 293 344 33 8 chr1 4468916 4469038 -277724626 + L2 LINE L2 3188 3312 -1 495 0 0 0 chr1 4470311 4470366 -277723298 + (CA)n Simple_repeat Simple_repeat 1 55 0 244 354 21 0 chr1 4471764 4471860 -277721804 - MIR SINE MIR -56 206 109 437 286 32 16 chr1 4472643 4472769 -277720895 - MIR3 SINE MIR -67 141 14 1700 159 9 38 chr1 4473202 4473344 -277720320 + AluJo SINE Alu 1 145 -167 2315 86 0 7 chr1 4473344 4473646 -277720018 + AluSq SINE Alu 1 300 -13 1700 159 9 38 chr1 4473646 4473823 -277719841 + AluJo SINE Alu 145 311 -1 4385 173 20 7 chr1 4473823 4474404 -277719260 + L1MB3 LINE L1 5179 5778 -405 2210 111 10 0 chr1 4474404 4474711 -277718953 + AluSx SINE Alu 1 310 -2 4385 173 20 7 chr1 4474711 4475067 -277718597 + L1MB3 LINE L1 5778 6128 -55 450 134 49 0 chr1 4476091 4476173 -277717491 + L1MB2 LINE L1 6086 6171 0 1764 149 3 17 chr1 4476310 4476598 -277717066 + AluJb SINE Alu 23 306 -6 2109 98 25 0 chr1 4476643 4476929 -277716735 + AluSx SINE Alu 18 310 -2 415 344 54 42 chr1 4477561 4477820 -277715844 - L3 LINE CR1 -152 1425 1164 269 314 98 36 chr1 4477994 4478188 -277715476 - L3 LINE CR1 -360 1217 1012 711 194 60 45 chr1 4478190 4478265 -277715399 + MER58B DNA MER1_type 1 73 -2347 1793 190 0 0 chr1 4478265 4478576 -277715088 - AluJo SINE Alu -1 311 1 711 194 60 45 chr1 4478576 4478701 -277714963 + MER58B DNA MER1_type 73 204 -2216 720 249 64 40 chr1 4478708 4478957 -277714707 - MLT1A2 LTR MaLR 0 374 120 983 126 0 31 chr1 4478958 4479117 -277714547 + AluJb SINE Alu 122 275 -37 520 113 94 0 chr1 4479117 4479223 -277714441 - MLT1A2 LTR MaLR -258 116 1 539 223 16 0 chr1 4479227 4479348 -277714316 + MER58B DNA MER1_type 211 333 -8 1374 175 13 89 chr1 4479349 4479663 -277714001 + AluJo SINE Alu 1 290 -22 1338 179 64 32 chr1 4479731 4479782 -277713882 + AluJo SINE Alu 1 49 -263 2075 85 18 0 chr1 4479782 4480064 -277713600 - AluSx SINE Alu -15 297 11 1338 179 64 32 chr1 4480064 4480146 -277713518 + AluJo SINE Alu 49 127 -185 297 0 0 0 chr1 4480146 4480179 -277713485 + (CA)n Simple_repeat Simple_repeat 2 34 0 1338 179 64 32 chr1 4480179 4480324 -277713340 + AluJo SINE Alu 127 289 -23 1945 112 18 7 chr1 4481584 4481869 -277711795 + AluJb SINE Alu 1 288 -24 213 39 0 0 chr1 4481877 4481903 -277711761 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 1123 181 67 0 chr1 4482024 4482234 -277711430 - MER58A DNA MER1_type 0 224 1 2227 113 7 0 chr1 4482256 4482566 -277711098 + AluSx SINE Alu 1 312 0 455 258 27 59 chr1 4483475 4483661 -277710003 - MIR SINE MIR -49 213 34 272 332 132 18 chr1 4483747 4484081 -277709583 - L2 LINE L2 -638 2676 2305 390 359 122 15 chr1 4484087 4484430 -277709234 + L2 LINE L2 2892 3271 -1 418 266 3 6 chr1 4484753 4485067 -277708597 + (CCA)n Simple_repeat Simple_repeat 1 313 0 397 228 0 11 chr1 4485097 4485277 -277708387 + (CCA)n Simple_repeat Simple_repeat 2 179 0 329 225 0 22 chr1 4485295 4485477 -277708187 + (CCA)n Simple_repeat Simple_repeat 2 179 0 242 211 0 11 chr1 4485492 4485582 -277708082 + (CCA)n Simple_repeat Simple_repeat 1 89 0 727 194 0 8 chr1 4487141 4487270 -277706394 - FLAM_A SINE Alu -3 130 3 468 289 31 5 chr1 4487276 4487409 -277706255 - MER113 DNA MER1_type? -320 201 60 2082 135 0 19 chr1 4487409 4487727 -277705937 + AluSx SINE Alu 1 312 0 468 289 31 5 chr1 4487727 4487787 -277705877 - MER113 DNA MER1_type? -461 60 3 200 289 0 0 chr1 4488156 4488201 -277705463 + (CA)n Simple_repeat Simple_repeat 1 45 0 2170 87 10 17 chr1 4488948 4489247 -277704417 - AluSx SINE Alu -15 297 1 212 248 0 69 chr1 4490827 4490928 -277702736 + G-rich Low_complexity Low_complexity 3 96 0 * 279 168 52 75 chr1 4490855 4491028 -277702636 + (AGGTG)n Simple_repeat Simple_repeat 3 171 0 * 350 207 55 43 chr1 4490946 4491110 -277702554 + G-rich Low_complexity Low_complexity 3 168 0 253 254 36 24 chr1 4491071 4491236 -277702428 + (GAGTG)n Simple_repeat Simple_repeat 5 171 0 * 386 213 58 40 chr1 4491168 4491342 -277702322 + G-rich Low_complexity Low_complexity 3 179 0 372 218 58 40 chr1 4491405 4491579 -277702085 + G-rich Low_complexity Low_complexity 3 179 0 218 206 43 54 chr1 4491603 4491695 -277701969 + G-rich Low_complexity Low_complexity 3 93 0 329 246 39 50 chr1 4492118 4492297 -277701367 + C-rich Low_complexity Low_complexity 3 179 0 355 231 33 55 chr1 4492315 4492497 -277701167 + C-rich Low_complexity Low_complexity 3 180 0 258 250 29 57 chr1 4492515 4492655 -277701009 + C-rich Low_complexity Low_complexity 3 138 0 1256 214 101 34 chr1 4492776 4493183 -277700481 + MLT1C LTR MaLR 4 437 -30 799 197 0 0 chr1 4493226 4493358 -277700306 + FLAM_A SINE Alu 1 132 -1 350 359 139 40 chr1 4493764 4494065 -277699599 + L1MC/D LINE L1 5449 5779 -2029 191 318 0 30 chr1 4494510 4494576 -277699088 + MIR SINE MIR 37 100 -108 218 303 115 8 chr1 4495516 4495638 -277698026 - L2 LINE L2 -60 3212 3078 248 278 0 0 chr1 4495701 4495755 -277697909 + MIR3 SINE MIR 117 170 -38 377 66 16 0 chr1 4496228 4496289 -277697375 + (TG)n Simple_repeat Simple_repeat 1 62 0 192 77 0 0 chr1 4496910 4496936 -277696728 + (TTTTC)n Simple_repeat Simple_repeat 5 30 0 247 300 80 0 chr1 4498688 4498788 -277694876 + MIR SINE MIR 42 149 -113 187 335 58 48 chr1 4499351 4499557 -277694107 + L2 LINE L2 2830 3037 -235 206 283 17 0 chr1 4501753 4501813 -277691851 + MIR SINE MIR 73 133 -129 198 333 36 63 chr1 4502185 4502296 -277691368 + MIR3 SINE MIR 15 122 -86 237 306 14 35 chr1 4504499 4504643 -277689021 + G-rich Low_complexity Low_complexity 1 141 0 * 285 254 14 51 chr1 4504551 4504689 -277688975 + GA-rich Low_complexity Low_complexity 1 133 0 406 213 131 0 chr1 4506050 4506172 -277687492 - Charlie1 DNA MER1_type -287 2474 2337 208 341 159 0 chr1 4506259 4506391 -277687273 + L2 LINE L2 3161 3313 0 430 285 115 6 chr1 4506950 4507115 -277686549 + MIR SINE MIR 77 259 -3 183 229 0 21 chr1 4508165 4508213 -277685451 - L2 LINE L2 -210 3062 3016 435 207 9 17 chr1 4508253 4508369 -277685295 - MLT1D LTR MaLR 0 505 391 4315 204 89 3 chr1 4508923 4510036 -277683628 - Charlie1a DNA MER1_type -6 1449 241 422 311 99 0 chr1 4510079 4510240 -277683424 - Charlie1a DNA MER1_type -1278 177 1 255 312 91 0 chr1 4510682 4510759 -277682905 - MER91A DNA MER1_type -111 85 2 1480 182 163 0 chr1 4511502 4511815 -277681849 + MER47A DNA MER2_type 3 366 0 199 242 0 76 chr1 4512462 4512528 -277681136 - L2 LINE L2 -6 3266 3206 338 256 35 0 chr1 4512552 4512638 -277681026 - MIR SINE MIR -46 216 128 609 265 62 65 chr1 4512952 4513035 -277680629 - L1MC4a LINE L1 -1842 5966 5884 1969 125 7 7 chr1 4513035 4513332 -277680332 - AluSx SINE Alu -14 298 2 609 265 62 65 chr1 4513332 4513603 -277680061 - L1MC4a LINE L1 -1924 5884 5613 652 271 46 8 chr1 4513623 4513863 -277679801 + L1M4 LINE L1 2210 2458 -3688 1380 181 27 4 chr1 4513864 4514339 -277679325 - MER68 LTR ERV1 0 562 3 879 235 70 78 chr1 4514343 4515050 -277678614 + L1M4 LINE L1 2486 3197 -2949 1775 170 83 9 chr1 4515050 4515374 -277678290 - MER7A DNA MER2_type 0 346 1 879 235 70 78 chr1 4515374 4515899 -277677765 + L1M4 LINE L1 3197 3908 -2238 238 349 121 6 chr1 4516489 4516655 -277677009 - L2 LINE L2 -54 3259 3075 321 347 151 8 chr1 4516995 4517234 -277676430 + L2 LINE L2 2624 2896 -418 1245 257 47 32 chr1 4517234 4517767 -277675897 - MER74A LTR ERVL -4 554 14 1554 124 87 4 chr1 4517772 4518047 -277675617 + AluJb SINE Alu 1 298 -14 319 296 72 13 chr1 4518074 4518226 -277675438 + L2 LINE L2 2883 3043 -270 225 94 0 0 chr1 4518226 4518258 -277675406 + (CCCTG)n Simple_repeat Simple_repeat 3 34 0 379 237 61 69 chr1 4518271 4518402 -277675262 + L2 LINE L2 3184 3313 0 366 274 63 23 chr1 4518674 4518849 -277674815 - MLT1K LTR MaLR 0 588 407 326 105 0 18 chr1 4519656 4519713 -277673951 + (TCCCC)n Simple_repeat Simple_repeat 3 58 0 221 286 0 0 chr1 4519820 4519869 -277673795 + C-rich Low_complexity Low_complexity 4 52 0 209 313 198 0 chr1 4519869 4519965 -277673699 - MIR SINE MIR -116 146 32 278 383 120 22 chr1 4520060 4520384 -277673280 - L2 LINE L2 -5 3308 2953 281 342 79 26 chr1 4521343 4521495 -277672169 - MIR SINE MIR -5 257 98 1134 163 5 5 chr1 4524112 4524302 -277669362 - AluJo SINE Alu -16 296 107 931 106 0 87 chr1 4524498 4524528 -277669136 + L1PB1 LINE L1 6005 6036 -115 2110 132 7 3 chr1 4524528 4524838 -277668826 + AluSx SINE Alu 1 311 -1 931 106 0 87 chr1 4524838 4524968 -277668696 + L1PB1 LINE L1 6036 6151 0 252 304 13 0 chr1 4525120 4525199 -277668465 - L2 LINE L2 -5 3267 3188 342 167 15 0 chr1 4525251 4525317 -277668347 - MER20 DNA MER1_type -1 218 152 1803 172 7 3 chr1 4527190 4527493 -277666171 - AluJb SINE Alu -8 304 1 286 191 0 0 chr1 4528654 4528671 -277664993 - AluSq SINE Alu -136 167 151 1702 112 29 0 chr1 4528671 4528912 -277664752 - AluSx SINE Alu -13 299 52 286 191 0 0 chr1 4528912 4528957 -277664707 - AluSq SINE Alu -151 152 105 1775 172 3 0 chr1 4529099 4529395 -277664269 - AluSx SINE Alu -15 297 1 362 319 90 12 chr1 4529506 4529672 -277663992 + MIR SINE MIR 65 243 -19 285 263 40 0 chr1 4529668 4529744 -277663920 - L2 LINE L2 -5 3267 3189 * 1074 118 40 79 chr1 4529796 4530024 -277663640 - MER20 DNA MER1_type 0 219 1 1777 163 7 10 chr1 4531168 4531469 -277662195 + AluJb SINE Alu 1 300 -12 2015 168 23 5 chr1 4531527 4531925 -277661739 - MER72 LTR ERV1 0 722 318 883 187 49 0 chr1 4531958 4532161 -277661503 - MER72 LTR ERV1 -505 217 5 1955 138 10 0 chr1 4532483 4532773 -277660891 + AluJo SINE Alu 2 294 -18 355 285 46 39 chr1 4532774 4532904 -277660760 - L1MC4 LINE L1 -1339 6703 6573 377 288 30 0 chr1 4533550 4533682 -277659982 - L1MC4 LINE L1 -1908 5900 5765 2278 101 7 0 chr1 4533727 4534035 -277659629 + AluSx SINE Alu 1 310 -2 1926 114 73 0 chr1 4534304 4534576 -277659088 - AluSx SINE Alu -10 302 11 266 298 12 12 chr1 4534748 4534832 -277658832 + L3 LINE CR1 1417 1500 -77 890 199 0 6 chr1 4535371 4535559 -277658105 + FRAM SINE Alu 1 176 0 1662 178 45 116 chr1 4536278 4536813 -277656851 - L1MB3 LINE L1 -1 6182 5686 24 0 0 0 chr1 4538657 4538681 -277654983 + GC_rich Low_complexity Low_complexity 1 24 0 1756 155 6 54 chr1 4538838 4539005 -277654659 - AluJb SINE Alu -10 302 156 2276 104 7 0 chr1 4539005 4539302 -277654362 - AluSx SINE Alu -13 299 1 1756 155 6 54 chr1 4539302 4539451 -277654213 - AluJb SINE Alu -156 156 1 335 286 0 0 chr1 4539686 4539763 -277653901 - L2 LINE L2 -4 3309 3233 348 224 60 82 chr1 4540740 4540923 -277652741 + MIR SINE MIR 33 211 -51 220 290 30 2 chr1 4541086 4541162 -277652502 - MIR SINE MIR -105 103 25 4644 179 22 42 chr1 4541697 4543209 -277650455 - L1MA6 LINE L1 -23 6277 4800 647 281 115 0 chr1 4543367 4543733 -277649931 - L1ME4a LINE L1 -233 5888 5481 2257 113 3 6 chr1 4544310 4544621 -277649043 + AluSg SINE Alu 1 310 0 311 191 0 11 chr1 4545070 4545159 -277648505 + (TAGGG)n Simple_repeat Simple_repeat 3 90 0 440 276 44 22 chr1 4546647 4546872 -277646792 - L1ME3A LINE L1 -220 5950 5721 416 245 167 30 chr1 4546969 4547202 -277646462 - MLT1H LTR MaLR -188 361 97 244 108 0 0 chr1 4547573 4547610 -277646054 + U2 snRNA snRNA 1 37 -151 240 294 81 22 chr1 4548168 4548304 -277645360 + L2 LINE L2 3168 3311 -2 282 56 0 0 chr1 4548343 4548379 -277645285 + (TG)n Simple_repeat Simple_repeat 1 36 0 534 143 0 12 chr1 4550211 4550295 -277643369 + FLAM_A SINE Alu 40 122 -20 1254 168 74 1 chr1 4550734 4551164 -277642500 - MER21B LTR ERV1 -358 505 1 1037 134 85 27 chr1 4551506 4551729 -277641935 - Tigger7 DNA MER2_type -2 2489 2254 952 212 47 0 chr1 4551743 4551936 -277641728 - Tigger7 DNA MER2_type -2254 233 32 2013 129 31 0 chr1 4552731 4553025 -277640639 - AluSx SINE Alu -9 303 1 406 296 73 14 chr1 4553739 4553959 -277639705 - L1MC5 LINE L1 -107 7854 7622 655 268 136 68 chr1 4555032 4555160 -277638504 - L1MC4 LINE L1 -376 7666 7548 2496 80 0 0 chr1 4555160 4555462 -277638202 - AluY SINE Alu -9 302 1 655 268 136 68 chr1 4555462 4556083 -277637581 - L1MC4 LINE L1 -494 7548 6866 573 314 63 35 chr1 4556096 4557050 -277636614 - L1ME4a LINE L1 -816 5330 4350 421 222 10 10 chr1 4557154 4557253 -277636411 - L1MD1 LINE L1 -1 6241 6143 1709 175 104 19 chr1 4557253 4557618 -277636046 - MSTD LTR MaLR 0 396 1 3571 105 18 0 chr1 4558556 4559061 -277634603 + MER75 DNA T2_type 1 514 0 338 325 25 12 chr1 4560315 4560478 -277633186 - MLT1D LTR MaLR 0 505 341 569 272 82 22 chr1 4560579 4560943 -277632721 - MLT1D LTR MaLR -119 386 1 2302 105 0 0 chr1 4561824 4562119 -277631545 - AluSx SINE Alu -17 295 1 2345 126 57 94 chr1 4565321 4565626 -277628038 + Tigger1 DNA MER2_type 1896 2211 -207 1790 174 7 0 chr1 4565626 4565914 -277627750 - AluJo SINE Alu -17 295 6 2345 126 57 94 chr1 4565914 4565953 -277627711 + Tigger1 DNA MER2_type 2211 2250 -168 2210 123 20 0 chr1 4565953 4566254 -277627410 - AluSx SINE Alu -5 307 1 2345 126 57 94 chr1 4566254 4566450 -277627214 + Tigger1 DNA MER2_type 2250 2417 -1 8246 228 49 34 chr1 4566450 4569104 -277624560 + L1M4 LINE L1 2137 4832 -1314 1390 236 114 43 chr1 4569092 4569609 -277624055 + L1MD2 LINE L1 5567 6120 -239 * 628 178 138 13 chr1 4571142 4571294 -277622370 + MER2 DNA MER2_type 159 329 -16 2444 67 0 0 chr1 4571797 4572109 -277621555 + AluY SINE Alu 1 312 0 21 0 0 0 chr1 4572168 4572189 -277621475 + AT_rich Low_complexity Low_complexity 1 21 0 1657 133 130 7 chr1 4572281 4572574 -277621090 + MER2 DNA MER2_type 2 330 -15 1983 161 0 3 chr1 4572756 4573060 -277620604 + AluJb SINE Alu 1 303 -9 2863 246 161 22 chr1 4573316 4574489 -277619175 - L1MEc LINE L1 -5029 1367 32 940 195 12 0 chr1 4574693 4574862 -277618802 - FRAM SINE Alu -8 168 1 803 175 35 14 chr1 4575005 4575148 -277618516 - AluJo SINE Alu -141 171 26 21 0 0 0 chr1 4575148 4575169 -277618495 + AT_rich Low_complexity Low_complexity 1 21 0 359 297 72 7 chr1 4575175 4575313 -277618351 + L1ME LINE L1 4669 4815 -1331 1902 163 132 37 chr1 4575348 4575809 -277617855 - MLT1D LTR MaLR 0 505 1 312 343 30 54 chr1 4575820 4575986 -277617678 + L1ME LINE L1 4904 5065 -1081 382 319 104 8 chr1 4576066 4576354 -277617310 + L1ME LINE L1 5332 5641 -521 269 111 44 0 chr1 4576655 4576700 -277616964 + MIR SINE MIR 98 144 -118 497 253 25 81 chr1 4576700 4577060 -277616604 + L1M4 LINE L1 4995 5334 -812 1756 131 3 122 chr1 4577351 4577481 -277616183 + AluJo SINE Alu 1 145 -157 1460 174 7 18 chr1 4577481 4577763 -277615901 + AluSc SINE Alu 1 279 -30 1756 131 3 122 chr1 4577763 4577975 -277615689 + AluJo SINE Alu 145 302 0 266 236 0 0 chr1 4578159 4578214 -277615450 - L2 LINE L2 -5 3267 3213 408 193 76 17 chr1 4578285 4578404 -277615260 + L1MC1 LINE L1 6191 6316 -17 623 316 112 49 chr1 4578429 4578514 -277615150 - L1 LINE L1 -2407 3739 3661 1002 221 72 0 chr1 4578514 4578722 -277614942 - MER58A DNA MER1_type -1 223 1 623 316 112 49 chr1 4578722 4579395 -277614269 - L1 LINE L1 -2485 3661 2890 745 280 92 9 chr1 4579622 4579970 -277613694 - MLT1I LTR MaLR -1 449 23 232 237 105 13 chr1 4580025 4580101 -277613563 + L2 LINE L2 3226 3308 -5 898 191 54 112 chr1 4580101 4580415 -277613249 - MLT1K LTR MaLR 0 588 293 961 102 16 0 chr1 4580858 4580985 -277612679 - AluSq/x SINE Alu -183 129 1 1610 197 0 45 chr1 4583266 4583575 -277610089 - AluJb SINE Alu -17 295 1 1679 83 0 0 chr1 4584541 4584758 -277608906 - AluSq SINE Alu -10 303 87 2584 55 0 0 chr1 4585138 4585449 -277608215 - AluY SINE Alu 0 311 1 789 247 18 0 chr1 4589802 4589972 -277603692 - MIR SINE MIR -9 253 81 979 182 44 0 chr1 4591638 4591819 -277601845 - MER53 DNA DNA 0 189 1 1662 234 62 77 chr1 4593272 4594218 -277599446 - L1MC5 LINE L1 -169 7792 6861 376 325 60 65 chr1 4594357 4595146 -277598518 + L1M4 LINE L1 2378 3162 -2984 4656 187 57 16 chr1 4596497 4596641 -277597023 - L1MC2 LINE L1 -1 6343 6206 1926 147 3 16 chr1 4596641 4596947 -277596717 - AluJb SINE Alu 0 312 11 4656 187 57 16 chr1 4596947 4598115 -277595549 - L1MC2 LINE L1 -138 6206 4967 857 325 109 19 chr1 4598111 4598834 -277594830 - L1ME3A LINE L1 -67 6103 5316 * 209 83 28 0 chr1 4598834 4598870 -277594794 + (TG)n Simple_repeat Simple_repeat 1 37 0 666 285 107 87 chr1 4599792 4601704 -277591960 - L1MC4 LINE L1 -143 7899 5860 260 329 84 21 chr1 4601824 4601967 -277591697 - L1MC4 LINE L1 -1969 5839 5688 1251 139 0 0 chr1 4602176 4602363 -277591301 - AluSg/x SINE Alu 0 310 124 3681 49 7 0 chr1 4602363 4602813 -277590851 - L1PA4 LINE L1 -1 6154 5702 900 292 62 54 chr1 4602858 4603231 -277590433 - L1M4 LINE L1 -2916 3230 2855 1241 171 19 0 chr1 4603234 4603450 -277590214 - AluJb SINE Alu -8 304 85 483 283 54 30 chr1 4603452 4603535 -277590129 - L1M4 LINE L1 -3322 2824 2744 8247 60 4 5 chr1 4603535 4604543 -277589121 + LTR13 LTR ERVK 1 1007 0 483 283 54 30 chr1 4604543 4604625 -277589039 - L1M4 LINE L1 -3402 2744 2655 223 289 67 83 chr1 4605177 4605357 -277588307 - L2 LINE L2 0 3272 3096 640 105 0 0 chr1 4605414 4605509 -277588155 - L1P LINE L1 -6007 139 45 208 268 146 0 chr1 4607942 4608065 -277585599 + L2 LINE L2 3105 3245 -27 184 151 208 57 chr1 4615781 4615834 -277577830 + L2 LINE L2 3193 3253 -60 288 130 0 0 chr1 4617468 4617514 -277576150 + (TG)n Simple_repeat Simple_repeat 1 46 0 687 137 0 0 chr1 4617616 4617740 -277575924 + (TG)n Simple_repeat Simple_repeat 1 124 0 389 331 42 0 chr1 4618502 4618644 -277575020 - MIR3 SINE MIR -49 159 12 438 259 12 42 chr1 4620594 4620760 -277572904 - MER5B DNA MER1_type -28 161 1 301 238 0 12 chr1 4625630 4625710 -277567954 - L1MC5 LINE L1 -187 7774 7696 445 285 91 0 chr1 4626007 4626193 -277567471 - L1MC5 LINE L1 -779 7182 6980 3025 270 108 28 chr1 4626334 4627806 -277565858 - L1MD3 LINE L1 0 8039 6461 614 243 4 6 chr1 4628211 4628721 -277564943 + (TG)n Simple_repeat Simple_repeat 1 509 0 488 242 7 0 chr1 4628735 4628888 -277564776 + (TG)n Simple_repeat Simple_repeat 1 154 0 247 265 48 0 chr1 4628890 4628973 -277564691 + (CATG)n Simple_repeat Simple_repeat 4 90 0 348 259 0 0 chr1 4628973 4629108 -277564556 + (TG)n Simple_repeat Simple_repeat 2 136 0 267 336 39 0 chr1 4631594 4631698 -277561966 - L3b LINE CR1 -331 1252 1145 217 362 143 0 chr1 4636094 4636290 -277557374 - L2 LINE L2 -508 2806 2583 880 261 64 16 chr1 4636307 4636621 -277557043 - MLT1J LTR MaLR -18 493 165 1255 244 138 14 chr1 4640609 4641023 -277552641 + MLT1C LTR MaLR 3 467 0 625 275 39 14 chr1 4642527 4642734 -277550930 - MLT1K LTR MaLR -16 572 361 2438 121 8 32 chr1 4643343 4643716 -277549948 + THE1B LTR MaLR 1 364 0 519 306 144 4 chr1 4644175 4644479 -277549185 + L2 LINE L2 2741 3083 -230 558 264 110 50 chr1 4644921 4645285 -277548379 + MLT1H LTR MaLR 155 540 -9 2085 122 148 16 chr1 4645570 4645948 -277547716 - MSTA LTR MaLR 0 428 1 186 118 0 0 chr1 4645968 4646002 -277547662 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 341 236 6 0 chr1 4647741 4647915 -277545749 + (TG)n Simple_repeat Simple_repeat 2 176 0 226 232 0 36 chr1 4648860 4648916 -277544748 + L2 LINE L2 3254 3307 -6 1439 194 56 24 chr1 4648966 4649167 -277544497 - MLT1A1 LTR MaLR 0 365 147 1847 147 0 66 chr1 4649167 4649379 -277544285 - AluJb SINE Alu 0 312 128 2389 68 0 0 chr1 4649379 4649673 -277543991 + AluY SINE Alu 1 294 -17 1847 147 0 66 chr1 4649673 4649794 -277543870 - AluJb SINE Alu -184 128 1 1439 194 56 24 chr1 4649794 4649932 -277543732 - MLT1A1 LTR MaLR -218 147 15 369 324 81 23 chr1 4650511 4650708 -277542956 - MIR SINE MIR -14 248 43 230 148 21 43 chr1 4650751 4650824 -277542840 - MER91 DNA MER1_type -126 70 1 229 360 23 0 chr1 4651213 4651299 -277542365 - MIR SINE MIR -98 164 77 191 174 0 65 chr1 4651998 4652044 -277541620 + MIR SINE MIR 96 138 -124 299 357 65 11 chr1 4652153 4652338 -277541326 + MIR SINE MIR 66 260 -2 1052 273 68 5 chr1 4652811 4653195 -277540469 + MLT2D LTR ERVL 7 414 0 271 275 43 72 chr1 4653737 4653875 -277539789 - MIR3 SINE MIR -72 136 3 237 176 39 78 chr1 4655236 4655338 -277538326 - MLT1H LTR MaLR -33 516 419 2355 88 0 0 chr1 4655890 4656195 -277537469 - AluSx SINE Alu -7 305 1 533 143 11 0 chr1 4657421 4657512 -277536152 + L1MB7 LINE L1 5886 5977 -207 251 83 0 0 chr1 4657518 4657554 -277536110 - MLT2C2 LTR ERVL 0 464 429 231 204 0 0 chr1 4657643 4657697 -277535967 + (TG)n Simple_repeat Simple_repeat 1 54 0 742 218 38 144 chr1 4658001 4658396 -277535268 - MER51C LTR ERV1 0 640 288 728 305 128 31 chr1 4659866 4660381 -277533283 + MLT1K LTR MaLR 14 578 -10 587 340 22 19 chr1 4661787 4662102 -277531562 - ERVL LTR ERVL -422 5342 5027 857 104 22 0 chr1 4662103 4662237 -277531427 - MER4B LTR ERV1 0 610 474 245 87 0 22 chr1 4662239 4662285 -277531379 + (TTTTA)n Simple_repeat Simple_repeat 1 45 0 6848 26 5 1 chr1 4662285 4663805 -277529859 - L1PA3 LINE L1 -24 6131 4608 2484 93 49 60 chr1 4663805 4664024 -277529640 - MER4B LTR ERV1 -129 481 261 2102 117 13 0 chr1 4664024 4664324 -277529340 - AluSx SINE Alu -8 304 1 2484 93 49 60 chr1 4664324 4664566 -277529098 - MER4B LTR ERV1 -349 261 23 2254 114 0 0 chr1 4664566 4664873 -277528791 - AluSq SINE Alu -6 307 1 2484 93 49 60 chr1 4664873 4664896 -277528768 - MER4B LTR ERV1 -587 23 1 529 305 80 5 chr1 4665140 4665353 -277528311 - ERVL LTR ERVL -1151 4613 4385 494 296 32 16 chr1 4665452 4665641 -277528023 - ERVL LTR ERVL -1524 4240 4049 792 369 38 19 chr1 4665755 4666541 -277527123 - ERVL LTR ERVL -1898 3866 3066 198 103 0 0 chr1 4666807 4666836 -277526828 + (TC)n Simple_repeat Simple_repeat 1 29 0 1785 129 58 0 chr1 4666836 4667114 -277526550 - AluSx SINE Alu -1 311 18 285 352 61 19 chr1 4667121 4667547 -277526117 - ERVL LTR ERVL -2879 2885 2422 480 351 53 1 chr1 4667652 4667970 -277525694 - ERVL LTR ERVL -2762 2234 1899 1027 257 68 31 chr1 4668059 4668516 -277525148 + MLT1H LTR MaLR 1 549 0 3875 134 17 26 chr1 4668874 4669341 -277524323 - MER50 LTR ERV1 -23 711 252 2392 107 13 43 chr1 4669341 4669716 -277523948 - THE1B LTR MaLR 0 364 1 3875 134 17 26 chr1 4669716 4669966 -277523698 - MER50 LTR ERV1 -482 252 1 721 278 28 0 chr1 4672262 4672474 -277521190 + MIR SINE MIR 45 262 0 25 0 0 0 chr1 4672499 4672524 -277521140 + GC_rich Low_complexity Low_complexity 1 25 0 609 244 38 38 chr1 4673263 4673501 -277520163 - LTR37B LTR ERV1 -27 441 204 407 130 0 130 chr1 4673888 4673914 -277519750 - MADE1 DNA Mariner 0 80 52 2452 67 0 0 chr1 4673914 4674214 -277519450 + AluY SINE Alu 1 300 -11 407 130 0 130 chr1 4674214 4674279 -277519385 - MADE1 DNA Mariner -28 52 1 328 282 42 33 chr1 4674998 4675211 -277518453 + MER113 DNA MER1_type? 9 223 -298 241 173 0 67 chr1 4675287 4675362 -277518302 + CT-rich Low_complexity Low_complexity 3 72 0 1378 165 53 8 chr1 4676466 4676709 -277516955 + AluJo SINE Alu 1 254 -58 1086 178 28 19 chr1 4676782 4676995 -277516669 + AluJb SINE Alu 91 305 -7 359 31 0 137 chr1 4678397 4678701 -277514963 + (CCCCAG)n Simple_repeat Simple_repeat 1 262 0 257 304 33 0 chr1 4678780 4678872 -277514792 - MER21B LTR ERV1 -767 96 2 256 328 56 16 chr1 4679526 4679651 -277514013 + MIR SINE MIR 60 189 -73 220 345 95 0 chr1 4680807 4680923 -277512741 + MIR3 SINE MIR 32 158 -50 5227 121 22 2 chr1 4880945 4881985 -277311679 - L1PA15 LINE L1 -87 6078 5021 252 0 0 0 chr1 4881985 4882013 -277311651 + (T)n Simple_repeat Simple_repeat 1 28 0 371 360 35 38 chr1 4882077 4882391 -277311273 - L1 LINE L1 -1124 5022 4710 515 67 33 11 chr1 4882498 4882588 -277311076 + (TCC)n Simple_repeat Simple_repeat 1 92 0 1598 148 4 34 chr1 4882606 4882870 -277310794 - AluJb SINE Alu -49 263 8 415 173 0 27 chr1 4883168 4883243 -277310421 + AluS SINE Alu 1 73 -240 1377 252 78 9 chr1 4883284 4883721 -277309943 - MLT1C LTR MaLR 0 467 1 1700 204 18 18 chr1 4884806 4885189 -277308475 - MER89 LTR ERV1 -2 557 175 202 293 0 0 chr1 4885203 4885261 -277308403 - L2 LINE L2 -1333 1981 1924 359 270 43 74 chr1 4885287 4885517 -277308147 - L2 LINE L2 -1487 1827 1605 786 232 102 68 chr1 4885561 4885945 -277307719 + MLT1C LTR MaLR 6 402 -65 519 132 0 13 chr1 4886045 4886121 -277307543 - AluJ/FLAM SINE Alu -236 76 2 237 315 41 14 chr1 4886123 4886269 -277307395 + L1MC4a LINE L1 6418 6567 -1241 685 282 146 15 chr1 4886300 4886630 -277307034 + L1MC4 LINE L1 6916 7288 -754 1442 290 83 6 chr1 4886732 4887277 -277306387 + L1MC4 LINE L1 7456 8042 0 2372 94 0 7 chr1 4887300 4887608 -277306056 + AluY SINE Alu 1 306 -5 220 258 245 52 chr1 4887994 4888118 -277305546 - MIR SINE MIR -71 137 8 983 236 218 21 chr1 4890277 4890395 -277303269 - MLT1C LTR MaLR 0 467 374 2122 138 13 45 chr1 4890395 4890632 -277303032 + THE1B LTR MaLR 1 223 -141 2294 109 3 0 chr1 4890632 4890926 -277302738 + AluSp SINE Alu 1 295 -18 2122 138 13 45 chr1 4890926 4891064 -277302600 + THE1B LTR MaLR 223 364 0 983 236 218 21 chr1 4891064 4891330 -277302334 - MLT1C LTR MaLR -93 374 7 458 232 129 0 chr1 4891540 4891695 -277301969 + MER96 DNA MER1_type 1 175 0 2481 18 0 7 chr1 4891911 4892188 -277301476 - AluYb8 SINE Alu -2 316 42 1871 170 66 28 chr1 4893172 4893704 -277299960 + MLT2A2 LTR ERVL 1 553 -1 920 154 6 0 chr1 4894393 4894568 -277299096 + (CAT)n Simple_repeat Simple_repeat 3 178 0 263 207 37 0 chr1 4894630 4894712 -277298952 + (CACCAT)n Simple_repeat Simple_repeat 2 86 0 268 185 0 19 chr1 4896288 4896342 -277297322 + MIR SINE MIR 94 146 -62 207 326 61 10 chr1 4897162 4897260 -277296404 + MIR SINE MIR 51 153 -109 305 297 79 44 chr1 4897299 4897528 -277296136 + L2 LINE L2 1816 2052 -1262 992 200 14 113 chr1 4897530 4897900 -277295764 - MLT1A2 LTR MaLR -41 333 1 280 294 78 17 chr1 4898318 4898498 -277295166 + L2 LINE L2 2375 2565 -749 1179 253 99 20 chr1 4898980 4899426 -277294238 - MER89 LTR ERV1 0 559 79 306 293 104 109 chr1 4899609 4899947 -277293717 - L1MDb LINE L1 -5697 712 377 378 206 41 0 chr1 4900389 4900486 -277293178 - MER89 LTR ERV1 -458 101 1 297 200 22 67 chr1 4900678 4900858 -277292806 + (TTGTG)n Simple_repeat Simple_repeat 5 176 0 360 171 40 57 chr1 4900877 4901052 -277292612 + (CTGTG)n Simple_repeat Simple_repeat 3 174 0 322 194 39 56 chr1 4901137 4901317 -277292347 + (CTGTG)n Simple_repeat Simple_repeat 3 179 0 713 246 110 75 chr1 4902049 4902532 -277291132 - MLT2B1 LTR ERVL 0 520 21 236 306 0 14 chr1 4904704 4904776 -277288888 + L2 LINE L2 3201 3271 -1 1907 124 61 164 chr1 4905505 4905982 -277287682 - MSTA LTR MaLR 0 428 1 1596 228 85 7 chr1 4906178 4906626 -277287038 - LTR53 LTR ERVL -14 505 23 2270 102 0 3 chr1 4906628 4906922 -277286742 + AluSx SINE Alu 1 293 -19 279 79 0 0 chr1 4906922 4906960 -277286704 + (TA)n Simple_repeat Simple_repeat 2 39 0 319 320 132 48 chr1 4907080 4907330 -277286334 + LTR16A1 LTR ERVL 187 457 0 387 325 49 25 chr1 4907347 4907510 -277286154 - MIR SINE MIR -31 231 65 456 173 13 0 chr1 4907513 4907588 -277286076 + AluJ/FLAM SINE Alu 2 77 -235 230 263 11 0 chr1 4907695 4907870 -277285794 + C-rich Low_complexity Low_complexity 1 177 0 342 282 12 0 chr1 4907881 4908145 -277285519 + C-rich Low_complexity Low_complexity 1 267 0 298 316 74 0 chr1 4908315 4908410 -277285254 + MIR SINE MIR 35 136 -72 495 216 123 43 chr1 4908489 4908651 -277285013 + MER5B DNA MER1_type 1 175 -3 385 213 25 65 chr1 4908807 4908978 -277284686 + MLT1C LTR MaLR 7 165 -346 1177 225 109 44 chr1 4908981 4909412 -277284252 + MLT1C LTR MaLR 1 459 -8 622 246 73 18 chr1 4909442 4909662 -277284002 + MLT1C LTR MaLR 202 433 -34 1134 239 141 10 chr1 4909892 4910289 -277283375 - MLT1C LTR MaLR -15 452 4 2290 90 3 0 chr1 4911221 4911510 -277282154 + AluSg SINE Alu 1 290 -20 546 207 155 1 chr1 4911897 4912026 -277281638 - MLT1C LTR MaLR -4 481 347 978 219 38 19 chr1 4912215 4912535 -277281129 - MLT1C LTR MaLR -141 326 1 429 276 0 0 chr1 4912552 4912650 -277281014 + MIR SINE MIR 106 203 -59 293 259 144 73 chr1 4913475 4913614 -277280050 + MLT1I LTR MaLR 1 129 -280 2278 118 0 0 chr1 4913614 4913911 -277279753 - AluSg1 SINE Alu -12 297 1 293 259 144 73 chr1 4913911 4914153 -277279511 + MLT1I LTR MaLR 129 409 0 1924 221 47 10 chr1 4914265 4914750 -277278914 + MLT1D LTR MaLR 1 503 -2 3480 129 30 38 chr1 4914806 4915410 -277278254 - MER4A LTR ERV1 -1 599 1 2417 99 0 0 chr1 4915780 4916084 -277277580 + AluSx SINE Alu 1 304 -8 2206 111 21 0 chr1 4917210 4917498 -277276166 - AluSx SINE Alu -18 294 1 25 31 0 0 chr1 4917822 4917854 -277275810 + AT_rich Low_complexity Low_complexity 1 32 0 522 167 74 105 chr1 4917854 4917963 -277275701 - L1MB2 LINE L1 -2 6169 6065 1864 145 3 41 chr1 4917963 4918281 -277275383 - AluSq SINE Alu -7 306 1 522 167 74 105 chr1 4918281 4918333 -277275331 - L1MB2 LINE L1 -106 6065 6013 358 285 95 34 chr1 4918449 4918628 -277275036 - L1ME3A LINE L1 -208 5962 5773 718 292 102 54 chr1 4918637 4918848 -277274816 - L1ME3A LINE L1 -684 5480 5280 2274 97 10 0 chr1 4918848 4919138 -277274526 - AluSg SINE Alu -17 293 1 718 292 102 54 chr1 4919138 4919482 -277274182 - L1ME3A LINE L1 -884 5280 3426 434 202 53 48 chr1 4919516 4919704 -277273960 + L1M4 LINE L1 5023 5211 -935 1293 176 90 14 chr1 4919986 4920289 -277273375 + MER61B LTR ERV1 1 425 0 5309 92 17 1 chr1 4920768 4921550 -277272114 + L1PB1 LINE L1 5352 6145 -6 1784 219 32 50 chr1 4921699 4921987 -277271677 - MLT1C LTR MaLR 0 467 190 2298 58 17 17 chr1 4921987 4922278 -277271386 - AluY SINE Alu -20 291 1 1784 219 32 50 chr1 4922278 4922464 -277271200 - MLT1C LTR MaLR -277 190 2 1495 169 4 4 chr1 4922702 4922967 -277270697 - AluJb SINE Alu 0 304 40 494 183 78 0 chr1 4923094 4923209 -277270455 + MLT1A1 LTR MaLR 242 365 0 284 209 151 93 chr1 4923414 4923444 -277270220 + MLT-int LTR MaLR 972 999 -736 2283 104 57 28 chr1 4923444 4923798 -277269866 + THE1B LTR MaLR 1 364 0 284 209 151 93 chr1 4923798 4923906 -277269758 + MLT-int LTR MaLR 999 1118 -617 1874 218 67 14 chr1 4923928 4924360 -277269304 + MLT1A1-int LTR MaLR 1267 1721 -14 1838 197 46 3 chr1 4924376 4924726 -277268938 + MLT1A1 LTR MaLR 1 365 0 514 317 94 20 chr1 4924988 4925555 -277268109 - L1MB2 LINE L1 -277 5897 5283 212 299 11 23 chr1 4925614 4925701 -277267963 + CT-rich Low_complexity Low_complexity 3 88 0 237 240 85 39 chr1 4925987 4926116 -277267548 + MLT1J1 LTR MaLR 80 214 -232 1177 260 108 42 chr1 4926283 4926334 -277267330 - L1ME LINE L1 -616 5550 5504 2818 103 0 5 chr1 4926334 4926711 -277266953 - THE1C LTR MaLR 0 375 1 1177 260 108 42 chr1 4926711 4927018 -277266646 - L1ME LINE L1 -662 5504 5218 1763 179 14 7 chr1 4927018 4927314 -277266350 - AluJb SINE Alu -14 298 1 1177 260 108 42 chr1 4927314 4927931 -277265733 - L1ME LINE L1 -948 5218 4502 950 142 45 102 chr1 4927940 4928185 -277265479 + MSTB2 LTR MaLR 1 231 -201 1764 201 36 27 chr1 4928185 4928732 -277264932 + MLT2A2 LTR ERVL 1 546 -8 806 160 43 27 chr1 4928739 4928926 -277264738 + MSTB2 LTR MaLR 243 432 0 21 57 0 0 chr1 4928945 4928980 -277264684 + AT_rich Low_complexity Low_complexity 1 35 0 1195 276 66 65 chr1 4928988 4929128 -277264536 - L1ME LINE L1 -1714 4432 4294 221 0 35 0 chr1 4929128 4929157 -277264507 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2058 126 0 4 chr1 4929162 4929440 -277264224 - AluSx SINE Alu -35 277 1 1195 276 66 65 chr1 4929440 4930245 -277263419 - L1ME LINE L1 -1855 4291 3480 * 2441 233 51 47 chr1 4930241 4931061 -277262603 - L1ME2 LINE L1 -8 6225 5410 1516 212 123 0 chr1 4931061 4931386 -277262278 + MLT1A1 LTR MaLR 1 365 0 2441 233 51 47 chr1 4931386 4931452 -277262212 - L1ME2 LINE L1 -823 5410 5346 225 0 0 0 chr1 4931452 4931477 -277262187 + (CA)n Simple_repeat Simple_repeat 1 25 0 2441 233 51 47 chr1 4931477 4931749 -277261915 - L1ME2 LINE L1 -887 5346 5052 * 3188 219 49 58 chr1 4931748 4932389 -277261275 - L1MC/D LINE L1 -743 5403 4758 16889 30 6 1 chr1 4932389 4935144 -277258520 - L1PA3 LINE L1 -3 6152 3389 3188 219 49 58 chr1 4935144 4936103 -277257561 - L1MC/D LINE L1 -1388 4758 3811 1850 143 118 0 chr1 4936105 4936420 -277257244 + MER47A DNA MER2_type 15 366 0 1556 271 11 4 chr1 4936420 4936877 -277256787 - L1MC/D LINE L1 -2423 3723 3264 1975 217 39 30 chr1 4937400 4937814 -277255850 - L1ME2 LINE L1 -1824 4391 3969 3012 125 7 9 chr1 4937814 4938263 -277255401 - MER83 LTR ERV1 0 448 1 1975 217 39 30 chr1 4938263 4938391 -277255273 - L1ME2 LINE L1 -2246 3969 3844 364 291 64 20 chr1 4938383 4938634 -277255030 - L1ME2 LINE L1 -4181 2036 1775 * 542 239 164 39 chr1 4938647 4939262 -277254402 - L1ME2 LINE L1 -4579 1817 877 620 320 92 52 chr1 4939364 4939725 -277253939 - L1ME2 LINE L1 -5514 882 537 2052 129 7 26 chr1 4939725 4940027 -277253637 - AluSg SINE Alu -9 301 6 620 320 92 52 chr1 4940027 4940461 -277253203 - L1ME2 LINE L1 -5859 537 55 185 333 0 0 chr1 4940488 4940545 -277253119 + L2 LINE L2 2691 2747 -567 2311 157 34 31 chr1 4940613 4941160 -277252504 + MLT2A2 LTR ERVL 1 554 0 320 250 27 18 chr1 4941382 4941494 -277252170 - MIR SINE MIR -2 260 148 23 42 0 21 chr1 4941616 4941637 -277252027 + AT_rich Low_complexity Low_complexity 1 21 -26 2333 97 3 3 chr1 4941637 4941945 -277251719 + AluSp SINE Alu 3 310 -3 23 42 0 21 chr1 4941945 4941971 -277251693 + AT_rich Low_complexity Low_complexity 21 47 0 2513 319 48 15 chr1 4942749 4943826 -277249838 + HERV16 LTR ERVL 2092 3222 -1901 333 269 75 0 chr1 4944296 4944389 -277249275 + L2 LINE L2 3211 3310 -3 456 209 74 34 chr1 4944389 4944537 -277249127 + MER103 DNA DNA 13 166 0 942 207 18 0 chr1 4945050 4945214 -277248450 - FAM SINE Alu -6 169 3 1749 147 8 0 chr1 4945549 4945815 -277247849 - THE1C LTR MaLR 0 375 108 10384 131 28 6 chr1 4945819 4947348 -277246316 + THE1C-int LTR MaLR 19 1580 0 2238 127 21 29 chr1 4947348 4947726 -277245938 + THE1C LTR MaLR 1 375 0 261 258 77 0 chr1 4948140 4948236 -277245428 + MIR SINE MIR 59 163 -45 316 220 220 40 chr1 4948648 4948821 -277244843 - L1MDa LINE L1 -4650 1890 1687 2589 149 31 2 chr1 4948885 4949301 -277244363 + MSTA LTR MaLR 1 428 0 3279 137 0 4 chr1 4949547 4950043 -277243621 - LOR1a LTR ERV1 0 497 4 750 210 0 34 chr1 4950518 4950694 -277242970 - LTR9B LTR ERV1 -83 561 392 441 253 0 0 chr1 4950898 4951060 -277242604 + (CA)n Simple_repeat Simple_repeat 1 162 0 797 224 15 15 chr1 4951116 4951312 -277242352 - L1MDa LINE L1 -5919 611 416 487 347 74 6 chr1 4951339 4951691 -277241973 - L1MC4a LINE L1 -1907 5901 5526 855 293 63 16 chr1 4951791 4952332 -277241332 - L2 LINE L2 -252 3061 2498 351 0 0 0 chr1 4952334 4952373 -277241291 + (TG)n Simple_repeat Simple_repeat 2 40 0 577 216 6 11 chr1 4952461 4952637 -277241027 + (TAGA)n Simple_repeat Simple_repeat 4 178 0 298 315 11 0 chr1 4952638 4952730 -277240934 + (TGGA)n Simple_repeat Simple_repeat 4 96 0 384 254 17 0 chr1 4952734 4952911 -277240753 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 502 282 96 13 chr1 4952971 4953031 -277240633 - L2 LINE L2 -880 2434 2380 1324 205 46 58 chr1 4953031 4953426 -277240238 - MLT1B LTR MaLR 0 390 1 502 282 96 13 chr1 4953426 4953666 -277239998 - L2 LINE L2 -934 2380 2109 281 178 41 55 chr1 4953863 4953936 -277239728 - L1ME LINE L1 -563 5607 5536 756 255 32 19 chr1 4954152 4954368 -277239296 - MER20 DNA MER1_type 0 219 1 1515 187 93 12 chr1 4954455 4954792 -277238872 + MSTD LTR MaLR 30 396 0 1773 29 0 5 chr1 4957861 4958071 -277235593 + L1PA4 LINE L1 5945 6153 -2 495 256 98 66 chr1 4958752 4959069 -277234595 - MLT1K LTR MaLR -1 587 261 285 214 31 0 chr1 4960125 4960223 -277233441 + CT-rich Low_complexity Low_complexity 3 103 0 203 313 17 61 chr1 4960695 4960810 -277232854 + L2 LINE L2 3161 3270 -2 1531 283 98 37 chr1 4960918 4962218 -277231446 - L1ME LINE L1 -4648 1432 64 483 107 0 0 chr1 4962255 4962330 -277231334 + (TTTC)n Simple_repeat Simple_repeat 3 77 0 2122 118 7 13 chr1 4962337 4962643 -277231021 - AluSx SINE Alu -8 304 1 200 188 0 0 chr1 4962727 4962759 -277230905 + (CTTA)n Simple_repeat Simple_repeat 2 33 0 482 267 37 12 chr1 4963056 4963217 -277230447 + MIR SINE MIR 17 181 -81 1325 216 102 12 chr1 4963276 4963619 -277230045 + MLT1A2 LTR MaLR 1 374 0 2479 158 8 0 chr1 4964772 4965172 -277228492 + MER57A LTR ERV1 1 403 0 243 133 0 0 chr1 4965313 4965358 -277228306 + (TG)n Simple_repeat Simple_repeat 2 46 0 234 62 0 0 chr1 4965717 4965749 -277227915 + (TGAA)n Simple_repeat Simple_repeat 4 35 0 233 269 30 0 chr1 4967286 4967353 -277226311 - MIR SINE MIR 0 262 194 1314 204 135 13 chr1 4967354 4967788 -277225876 - MLT1E LTR MaLR 0 593 102 380 172 0 0 chr1 4967779 4967837 -277225827 - MLT1E LTR MaLR -455 138 81 * 365 279 0 95 chr1 4968011 4968190 -277225474 - MIR SINE MIR -77 185 24 186 364 56 19 chr1 4968564 4968726 -277224938 - MIR SINE MIR -48 214 47 638 276 62 73 chr1 4970580 4971062 -277222602 + MLT1J LTR MaLR 12 488 -23 2231 119 3 0 chr1 4971134 4971437 -277222227 - AluSp SINE Alu -9 304 1 256 298 11 11 chr1 4971445 4971539 -277222125 - MIR SINE MIR -108 154 61 288 324 11 50 chr1 4972219 4972398 -277221266 - MIR SINE MIR -10 252 81 3086 138 7 43 chr1 4972554 4972966 -277220698 + L1PA16 LINE L1 5630 6019 -147 1763 168 0 34 chr1 4972966 4973297 -277220367 + AluJb SINE Alu 3 323 0 3086 138 7 43 chr1 4973297 4973440 -277220224 + L1PA16 LINE L1 6019 6166 0 578 222 149 26 chr1 4973710 4973904 -277219760 - LTR16C LTR ERVL -2 489 272 220 271 0 0 chr1 4973932 4973991 -277219673 + (ATGGTG)n Simple_repeat Simple_repeat 4 62 0 23 0 0 0 chr1 4974103 4974126 -277219538 + AT_rich Low_complexity Low_complexity 1 23 0 1340 123 5 9 chr1 4974126 4974337 -277219327 - L1PA15 LINE L1 0 6165 5956 529 326 39 25 chr1 4974551 4974913 -277218751 - L1PA13 LINE L1 -748 6049 5683 478 116 147 0 chr1 4974925 4975020 -277218644 - AluSp/q SINE Alu -2 311 203 15611 219 21 7 chr1 4975025 4979415 -277214249 - L1PA13 LINE L1 -1134 5663 1179 2232 265 23 5 chr1 4979780 4980396 -277213268 - L1ME3 LINE L1 -7 6155 5529 256 301 83 74 chr1 4980406 4980635 -277213029 + MIR SINE MIR 31 261 -1 249 325 42 17 chr1 4981543 4981663 -277212001 + MIR SINE MIR 13 135 -127 488 247 0 0 chr1 4982865 4982958 -277210706 + MER81 DNA DNA 2 94 -20 256 265 29 0 chr1 4982957 4983025 -277210639 + MER81 DNA DNA 44 113 -1 * 297 302 21 10 chr1 4983523 4983619 -277210045 + MIR SINE MIR 87 183 -79 659 207 12 0 chr1 4983691 4983860 -277209804 + (TCCA)n Simple_repeat Simple_repeat 3 173 0 1115 133 2 8 chr1 4983874 4984354 -277209310 + (TCCA)n Simple_repeat Simple_repeat 1 477 0 302 335 30 37 chr1 4984373 4984461 -277209203 - L2 LINE L2 -44 3269 3181 2748 97 8 3 chr1 4984461 4984823 -277208841 - THE1B LTR MaLR 0 364 1 302 335 30 37 chr1 4984823 4984898 -277208766 - L2 LINE L2 -132 3181 3107 324 308 125 47 chr1 4985194 4985658 -277208006 - L2 LINE L2 -582 2732 2233 1361 225 45 51 chr1 4987756 4988205 -277205459 - MER74A LTR ERVL -13 545 100 1013 160 11 6 chr1 4988307 4988788 -277204876 + (CAT)n Simple_repeat Simple_repeat 1 483 0 242 219 37 0 chr1 4988792 4988874 -277204790 + (CACCAT)n Simple_repeat Simple_repeat 2 86 0 257 215 0 31 chr1 4990450 4990515 -277203149 + MIR SINE MIR 93 155 -107 198 326 61 10 chr1 4991326 4991424 -277202240 + MIR SINE MIR 51 153 -109 307 297 79 44 chr1 4991463 4991692 -277201972 + L2 LINE L2 1816 2052 -1262 278 176 0 0 chr1 4991694 4991745 -277201919 - MLT1B LTR MaLR -41 349 299 399 206 41 0 chr1 4992740 4992837 -277200827 - MER89 LTR ERV1 -458 101 1 337 173 29 64 chr1 4993046 4993219 -277200445 + (TTGTG)n Simple_repeat Simple_repeat 5 171 0 303 206 33 60 chr1 4993240 4993424 -277200240 + (CTGTG)n Simple_repeat Simple_repeat 1 179 0 895 227 117 80 chr1 4994123 4994585 -277199079 - MLT2B1 LTR ERVL 0 520 42 221 319 0 14 chr1 4996791 4996863 -277196801 + L2 LINE L2 3201 3271 -1 1719 155 115 3 chr1 4997592 4997915 -277195749 - MSTA LTR MaLR 0 428 70 740 76 14 1 chr1 4998029 4998148 -277195516 - MSTA LTR MaLR -302 124 1 1739 225 82 7 chr1 4998344 4998793 -277194871 - LTR53 LTR ERVL -14 505 23 2151 101 0 3 chr1 4998795 4999091 -277194573 + AluSx SINE Alu 1 295 -17 279 79 0 0 chr1 4999091 4999129 -277194535 + (TA)n Simple_repeat Simple_repeat 2 39 0 420 320 132 48 chr1 4999249 4999499 -277194165 + LTR16A1 LTR ERVL 187 457 0 377 325 49 25 chr1 4999516 4999679 -277193985 - MIR SINE MIR -31 231 65 1198 198 12 12 chr1 4999681 4999924 -277193740 + AluJo SINE Alu 1 243 -69 181 318 218 13 chr1 5000032 5000271 -277193393 + L2 LINE L2 2981 3268 -4 260 359 17 0 chr1 5002389 5002506 -277191158 + L2 LINE L2 3182 3300 -13 246 62 0 0 chr1 5002506 5002538 -277191126 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 2755 107 11 5 chr1 5003480 5003853 -277189811 + THE1C LTR MaLR 1 375 0 214 316 0 0 chr1 5004516 5004573 -277189091 + (CA)n Simple_repeat Simple_repeat 1 57 0 348 310 9 9 chr1 5004788 5004901 -277188763 - MER81 DNA DNA 0 114 2 2100 113 0 0 chr1 5006287 5006571 -277187093 + AluSc SINE Alu 1 287 -22 210 71 0 0 chr1 5006571 5006599 -277187065 + (TG)n Simple_repeat Simple_repeat 2 29 0 991 30 15 0 chr1 5006629 5006760 -277186904 + (TATATG)n Simple_repeat Simple_repeat 2 134 0 1178 234 114 91 chr1 5006760 5007455 -277186209 + MER21B LTR ERV1 23 733 -130 1357 214 85 55 chr1 5007567 5008001 -277185663 - MLT1C LTR MaLR -15 452 6 349 270 43 74 chr1 5008045 5008275 -277185389 + L2 LINE L2 1605 1827 -1487 194 293 0 0 chr1 5008301 5008359 -277185305 + L2 LINE L2 1924 1981 -1333 1803 203 16 18 chr1 5008373 5008757 -277184907 + MER89 LTR ERV1 175 557 -2 339 250 267 30 chr1 5008759 5009055 -277184609 + L2 LINE L2 1975 2340 -974 279 325 103 17 chr1 5009095 5009212 -277184452 - MLT1H LTR MaLR -16 533 407 254 261 61 26 chr1 5009399 5009514 -277184150 - MLT1I LTR MaLR -272 137 19 1933 144 174 11 chr1 5009565 5009933 -277183731 + MSTA LTR MaLR 1 428 0 9739 133 32 35 chr1 5009935 5011518 -277182146 + MSTA-int LTR MaLR 3 1580 0 1216 134 259 14 chr1 5011518 5011808 -277181856 + MSTA LTR MaLR 1 361 -67 1890 286 52 37 chr1 5011817 5012690 -277180974 + L1ME2 LINE L1 4420 5305 -841 820 291 43 78 chr1 5012699 5013391 -277180273 + L1MB1 LINE L1 5264 5931 -258 * 2418 229 54 57 chr1 5012791 5013600 -277180064 + L1ME2 LINE L1 5349 6155 -9 1832 133 7 4 chr1 5013640 5013918 -277179746 + AluSx SINE Alu 21 299 -13 274 207 0 0 chr1 5015466 5015524 -277178140 + Charlie5 DNA MER1_type 33 90 -2522 2846 35 15 0 chr1 5015564 5015904 -277177760 - L1PA4 LINE L1 0 6155 5811 230 303 64 9 chr1 5018021 5018130 -277175534 - MIR SINE MIR -15 247 133 2288 130 37 11 chr1 5018531 5018886 -277174778 + THE1B LTR MaLR 1 364 0 2138 226 12 53 chr1 5019039 5019544 -277174120 + MER66B LTR ERV1 1 484 -2 207 0 0 0 chr1 5020499 5020522 -277173142 + (CA)n Simple_repeat Simple_repeat 1 23 0 633 186 0 0 chr1 5021797 5021926 -277171738 + (GAGTG)n Simple_repeat Simple_repeat 2 130 0 948 146 0 0 chr1 5021927 5022105 -277171559 + (GAATG)n Simple_repeat Simple_repeat 3 180 0 348 83 0 0 chr1 5022107 5022155 -277171509 + (AATAG)n Simple_repeat Simple_repeat 4 51 0 730 274 100 20 chr1 5022381 5022680 -277170984 - MLT1I LTR MaLR 0 409 87 429 303 12 36 chr1 5022869 5023034 -277170630 - L2 LINE L2 -2 3311 3151 320 200 294 0 chr1 5023042 5023127 -277170537 + MER3 DNA MER1_type 5 114 -95 925 124 0 0 chr1 5023128 5023257 -277170407 + AluSg1 SINE Alu 1 129 -180 408 302 50 23 chr1 5024335 5024510 -277169154 + MIR SINE MIR 34 214 -48 962 120 23 0 chr1 5024657 5024667 -277168997 + (ATG)n Simple_repeat Simple_repeat 1 189 0 962 120 23 0 chr1 5024667 5024842 -277168822 + (ATG)n Simple_repeat Simple_repeat 1 179 0 984 151 0 0 chr1 5024967 5025146 -277168518 + (ATG)n Simple_repeat Simple_repeat 1 179 0 510 270 55 18 chr1 5025198 5025361 -277168303 - MIR SINE MIR -9 253 85 482 307 73 0 chr1 5026220 5026425 -277167239 - MIR SINE MIR -29 233 14 1105 104 37 0 chr1 5026862 5027026 -277166638 + THE1C LTR MaLR 3 172 -203 * 1503 150 62 11 chr1 5027024 5027297 -277166367 + THE1C LTR MaLR 89 375 0 420 19 0 0 chr1 5027990 5028042 -277165622 - THE1C LTR MaLR -201 174 123 * 997 193 42 146 chr1 5028041 5028398 -277165266 + MLT1C LTR MaLR 71 390 0 182 385 8 8 chr1 5028456 5028578 -277165086 - L2 LINE L2 -1488 1826 1705 203 242 65 0 chr1 5028716 5028778 -277164886 + L2 LINE L2 3201 3266 -6 508 271 23 8 chr1 5028969 5029102 -277164562 - MER5A DNA MER1_type 0 189 55 358 318 34 20 chr1 5028987 5029135 -277164529 + MER5A DNA MER1_type 32 181 -8 * 1848 156 0 29 chr1 5029398 5029705 -277163959 - AluJb SINE Alu -14 298 1 689 360 34 24 chr1 5030909 5031237 -277162427 + HERV16 LTR ERVL 2646 2976 -2020 1756 224 95 25 chr1 5031292 5031841 -277161823 + MER92B LTR ERV1 1 587 -49 369 202 22 22 chr1 5032093 5032182 -277161482 + MER92B LTR ERV1 546 634 -2 1421 226 45 25 chr1 5033904 5034352 -277159312 - MLT1C LTR MaLR 0 467 1 1662 115 51 90 chr1 5034361 5034751 -277158913 + THE1C LTR MaLR 1 375 0 1147 231 196 3 chr1 5035169 5035542 -277158122 + MER90 LTR ERV1 1 445 -130 753 256 10 20 chr1 5035662 5035865 -277157799 + MER90 LTR ERV1 414 614 0 245 252 191 8 chr1 5035874 5036005 -277157659 - MIR SINE MIR 0 262 108 298 231 0 50 chr1 5036110 5036231 -277157433 + (TATATG)n Simple_repeat Simple_repeat 4 118 0 340 366 8 2 chr1 5036232 5036359 -277157305 - MIR SINE MIR -54 154 28 281 219 12 61 chr1 5036381 5036463 -277157201 + L2 LINE L2 3236 3313 0 478 318 34 0 chr1 5036481 5036660 -277157004 + L1ME LINE L1 5530 5714 -456 306 73 0 0 chr1 5036902 5036943 -277156721 + (TG)n Simple_repeat Simple_repeat 2 42 0 241 206 48 0 chr1 5036945 5037008 -277156656 + GA-rich Low_complexity Low_complexity 2 67 0 1785 90 5 0 chr1 5037112 5037334 -277156330 + AluSg/x SINE Alu 77 299 -13 718 264 67 11 chr1 5037699 5037983 -277155681 - MLT1C LTR MaLR 0 467 168 5269 54 8 11 chr1 5037986 5038693 -277154971 + L1PA7 LINE L1 5450 6154 0 509 208 101 13 chr1 5038781 5038930 -277154734 - MLT1C LTR MaLR -299 168 7 218 271 112 48 chr1 5038932 5039120 -277154544 - L2 LINE L2 -649 2665 2466 353 206 118 113 chr1 5040278 5040342 -277153322 - LTR50 LTR ERVL -27 768 706 2027 132 35 0 chr1 5040342 5040630 -277153034 + AluSp SINE Alu 1 298 -15 2568 77 0 0 chr1 5040630 5040941 -277152723 + AluY SINE Alu 1 311 0 353 206 118 113 chr1 5040941 5041079 -277152585 - LTR50 LTR ERVL -88 707 564 408 246 57 8 chr1 5041624 5041746 -277151918 - MLT1J1 LTR MaLR -71 375 248 615 230 67 12 chr1 5041758 5041923 -277151741 - MLT1C LTR MaLR -7 460 287 398 290 10 5 chr1 5041923 5042136 -277151528 + (TG)n Simple_repeat Simple_repeat 1 214 0 714 250 85 4 chr1 5042883 5043119 -277150545 + MIR SINE MIR 8 262 0 316 320 0 0 chr1 5043121 5043221 -277150443 - MIR SINE MIR -2 260 161 304 257 0 55 chr1 5043441 5043550 -277150114 - MIR SINE MIR -120 142 40 753 165 0 0 chr1 5045474 5045638 -277148026 + GA-rich Low_complexity Low_complexity 1 164 0 2791 104 46 0 chr1 5045643 5046058 -277147606 + LTR1 LTR ERV1 352 785 0 1010 184 50 0 chr1 5046058 5046254 -277147410 + Tigger7 DNA MER2_type 2282 2487 0 1034 273 106 8 chr1 5047242 5047638 -277146026 + MLT1C LTR MaLR 5 439 -28 188 247 62 62 chr1 5047782 5047863 -277145801 - MIR SINE MIR -62 146 66 222 174 0 0 chr1 5048256 5048302 -277145362 + A-rich Low_complexity Low_complexity 1 46 0 302 235 37 0 chr1 5048967 5049048 -277144616 + MER5A DNA MER1_type 26 109 -80 218 224 17 17 chr1 5049040 5049098 -277144566 - MER5A DNA MER1_type -113 76 19 * 1000 258 65 53 chr1 5049931 5050349 -277143315 + MLT1C LTR MaLR 44 466 -1 847 261 108 56 chr1 5051954 5052295 -277141369 + MLT1J LTR MaLR 41 399 -112 228 343 14 0 chr1 5052456 5052526 -277141138 + L2 LINE L2 3243 3313 0 2403 130 54 2 chr1 5052535 5052720 -277140944 + MSTA LTR MaLR 1 175 -253 4035 54 4 2 chr1 5052720 5053240 -277140424 + L1PA6 LINE L1 5634 6154 0 2403 130 54 2 chr1 5053240 5053461 -277140203 + MSTA LTR MaLR 175 428 0 24 0 0 0 chr1 5053542 5053566 -277140098 + AT_rich Low_complexity Low_complexity 1 24 0 1237 232 41 11 chr1 5054284 5054646 -277139018 + MLT1A2 LTR MaLR 2 374 0 1744 222 71 5 chr1 5054925 5055348 -277138316 + MLT1C LTR MaLR 1 451 -16 191 277 67 76 chr1 5056859 5056978 -277136686 + MIR3 SINE MIR 84 201 -7 * 425 215 82 138 chr1 5056943 5057138 -277136526 - MIR SINE MIR -49 213 30 471 206 14 7 chr1 5057297 5057438 -277136226 + (ATG)n Simple_repeat Simple_repeat 2 143 0 510 217 18 0 chr1 5057466 5057632 -277136032 + (ATG)n Simple_repeat Simple_repeat 2 170 0 263 194 32 0 chr1 5057637 5057699 -277135965 + (ATGGTG)n Simple_repeat Simple_repeat 2 65 0 483 218 11 11 chr1 5057709 5057883 -277135781 + (ATG)n Simple_repeat Simple_repeat 1 174 0 730 169 6 12 chr1 5057899 5058071 -277135593 + (ATG)n Simple_repeat Simple_repeat 2 172 0 299 202 11 0 chr1 5058085 5058174 -277135490 + (ATG)n Simple_repeat Simple_repeat 2 91 0 473 336 22 18 chr1 5058302 5058437 -277135227 - L2 LINE L2 -691 2623 2485 1074 205 14 0 chr1 5058437 5058652 -277135012 - MER20 DNA MER1_type 0 219 2 473 336 22 18 chr1 5058652 5058742 -277134922 - L2 LINE L2 -829 2485 2397 * 487 245 0 0 chr1 5058738 5058836 -277134828 + L2 LINE L2 3216 3313 0 * 1193 326 67 20 chr1 5058835 5059495 -277134169 - L2 LINE L2 -902 2412 1722 1074 165 385 15 chr1 5059496 5059836 -277133828 - MER31B LTR ERV1 0 466 1 203 210 32 0 chr1 5059851 5059913 -277133751 - L2 LINE L2 -1612 1702 1639 432 254 0 27 chr1 5061040 5061150 -277132514 + (CCCA)n Simple_repeat Simple_repeat 2 108 0 489 253 0 0 chr1 5061155 5061317 -277132347 + (TCCA)n Simple_repeat Simple_repeat 2 163 0 801 220 3 7 chr1 5061347 5061656 -277132008 + (TCCA)n Simple_repeat Simple_repeat 1 307 0 269 258 17 17 chr1 5061667 5061713 -277131951 + (CCCA)n Simple_repeat Simple_repeat 3 48 -132 1963 154 118 26 chr1 5061713 5062103 -277131561 - MSTA LTR MaLR -2 426 1 269 258 17 17 chr1 5062103 5062234 -277131430 + (CCCA)n Simple_repeat Simple_repeat 47 180 0 * 362 282 6 0 chr1 5062227 5062397 -277131267 + (TCCA)n Simple_repeat Simple_repeat 1 171 0 214 327 77 0 chr1 5062792 5062896 -277130768 - L2 LINE L2 -517 2797 2686 621 315 28 0 chr1 5063034 5063247 -277130417 - MIR SINE MIR -29 233 15 2259 136 63 29 chr1 5063356 5063768 -277129896 - MSTB LTR MaLR 0 426 1 1463 257 46 33 chr1 5064043 5064587 -277129077 + L1ME2 LINE L1 5504 6054 -110 2161 112 31 3 chr1 5064590 5064926 -277128738 - AluSg SINE Alu 0 349 6 267 262 107 0 chr1 5064936 5065039 -277128625 + L1ME2 LINE L1 6041 6154 -10 254 194 15 0 chr1 5065075 5065142 -277128522 + GA-rich Low_complexity Low_complexity 4 71 0 362 317 83 17 chr1 5066840 5067095 -277126569 + L1ME4a LINE L1 5618 5887 -234 1616 179 12 52 chr1 5067098 5067423 -277126241 + AluJo SINE Alu 1 312 0 336 102 0 0 chr1 5067425 5067474 -277126190 + (GGA)n Simple_repeat Simple_repeat 3 51 0 1536 199 62 17 chr1 5068233 5068585 -277125079 - MLT1B LTR MaLR -22 368 1 1864 136 0 0 chr1 5068660 5068911 -277124753 + AluSx SINE Alu 40 290 -22 3558 108 25 56 chr1 5069513 5070589 -277123075 - MER11A LTR ERVK 0 1071 1 515 253 94 109 chr1 5070591 5070847 -277122817 + MER77 LTR ERV1 60 318 -287 2570 113 0 0 chr1 5070847 5071211 -277122453 - THE1B LTR MaLR 0 364 1 515 253 94 109 chr1 5071211 5071484 -277122180 + MER77 LTR ERV1 318 601 -4 237 227 30 15 chr1 5071485 5071551 -277122113 + MER21B LTR ERV1 613 679 -184 28 0 0 0 chr1 5071633 5071661 -277122003 + AT_rich Low_complexity Low_complexity 1 28 0 1645 176 56 14 chr1 5072366 5072775 -277120889 + MLT1C LTR MaLR 1 467 0 352 331 83 35 chr1 5073392 5073418 -277120246 - MLT1L LTR MaLR 0 615 592 2198 134 111 8 chr1 5073418 5073806 -277119858 - MSTA LTR MaLR 0 428 1 352 331 83 35 chr1 5073806 5074033 -277119631 - MLT1L LTR MaLR -23 592 350 1981 143 28 33 chr1 5074462 5074825 -277118839 + THE1B LTR MaLR 1 361 -3 1412 181 7 34 chr1 5075166 5075459 -277118205 - MLT1C LTR MaLR -31 436 152 881 179 10 51 chr1 5075458 5075654 -277118010 - MLT1C LTR MaLR -279 188 1 * 456 236 42 56 chr1 5076610 5076754 -277116910 + MIR SINE MIR 85 226 -36 208 333 12 0 chr1 5076771 5076852 -277116812 + (TG)n Simple_repeat Simple_repeat 1 82 0 436 288 41 35 chr1 5076859 5077029 -277116635 - L2 LINE L2 -28 3285 3115 669 327 40 4 chr1 5077137 5077415 -277116249 - MLT1I LTR MaLR -3 406 119 265 241 45 62 chr1 5077559 5077671 -277115993 - MIR SINE MIR -119 143 34 2241 171 24 31 chr1 5077730 5078151 -277115513 + MSTB LTR MaLR 9 426 0 300 322 131 20 chr1 5078970 5079169 -277114495 - MIR SINE MIR -34 228 8 5342 205 29 30 chr1 5079945 5079964 -277113700 + L1MC1 LINE L1 4065 4083 -2250 2450 89 47 6 chr1 5079964 5080324 -277113340 + THE1C LTR MaLR 1 375 0 5342 205 29 30 chr1 5080324 5082563 -277111101 + L1MC1 LINE L1 4083 6333 0 400 176 232 31 chr1 5082565 5082692 -277110972 + L1ME1 LINE L1 6024 6334 0 1641 216 29 3 chr1 5083543 5083894 -277109770 + MLT1A1 LTR MaLR 6 365 0 354 23 0 0 chr1 5086914 5086957 -277106707 + (TG)n Simple_repeat Simple_repeat 1 43 0 560 286 7 0 chr1 5087818 5087965 -277105699 + MER3 DNA MER1_type 1 148 -61 3765 209 47 19 chr1 5088700 5089503 -277104161 - LTR1B LTR ERV1 0 826 1 258 101 45 45 chr1 5090592 5090681 -277102983 + (TTAAA)n Simple_repeat Simple_repeat 4 92 0 1821 184 10 7 chr1 5090863 5091167 -277102497 - AluJo SINE Alu -7 305 1 2518 181 89 20 chr1 5091628 5092236 -277101428 + L1MC3 LINE L1 7124 7773 -12 868 210 28 40 chr1 5092257 5092509 -277101155 + L1MB3 LINE L1 5931 6179 -4 2332 56 20 0 chr1 5092537 5092839 -277100825 - L1PA8 LINE L1 -2 6170 5863 2295 80 0 0 chr1 5092840 5093154 -277100510 + L1PA8 LINE L1 5573 5886 -286 379 356 54 0 chr1 5094230 5094379 -277099285 - MER5B DNA MER1_type -16 162 6 2030 149 3 3 chr1 5095712 5096008 -277097656 - AluSx SINE Alu -14 298 3 260 265 147 29 chr1 5097555 5097691 -277095973 + L2 LINE L2 2916 3067 -246 354 292 70 39 chr1 5097712 5098274 -277095390 - L1MC/D LINE L1 -727 5443 4903 492 283 143 12 chr1 5098302 5098553 -277095111 - MLT1J LTR MaLR -2 509 226 2407 122 111 8 chr1 5098857 5099243 -277094421 + MSTB LTR MaLR 1 426 0 586 309 66 18 chr1 5099306 5099821 -277093843 - L1MC/D LINE L1 -1478 4668 4129 235 185 19 37 chr1 5099927 5099981 -277093683 + CT-rich Low_complexity Low_complexity 3 55 0 4076 133 13 39 chr1 5100087 5100803 -277092861 - MER50 LTR ERV1 -24 710 14 488 294 46 18 chr1 5100926 5101144 -277092520 - L1MC/D LINE L1 -2336 3810 3587 21 0 0 0 chr1 5101218 5101239 -277092425 + AT_rich Low_complexity Low_complexity 1 21 0 386 282 112 30 chr1 5101248 5101723 -277091941 - L1MC/D LINE L1 -2751 3395 2882 367 280 158 41 chr1 5101787 5102181 -277091483 - L1MDa LINE L1 -2805 3735 2330 287 304 43 52 chr1 5102254 5102580 -277091084 - HAL1 LINE L1 -761 1746 1424 228 296 78 39 chr1 5102650 5102907 -277090757 - L1MDa LINE L1 -4862 1668 1402 1896 160 0 11 chr1 5102948 5103269 -277090395 + AluJb SINE Alu 3 320 0 231 36 0 0 chr1 5104632 5104660 -277089004 + (TG)n Simple_repeat Simple_repeat 1 28 0 1777 159 0 17 chr1 5105426 5105722 -277087942 + AluSx SINE Alu 22 312 0 262 353 24 39 chr1 5105923 5106130 -277087534 - L2 LINE L2 -1 3312 3109 228 224 0 20 chr1 5107015 5107064 -277086600 + CT-rich Low_complexity Low_complexity 3 50 0 416 303 92 16 chr1 5107590 5107775 -277085889 + MIR SINE MIR 63 261 -1 188 296 34 80 chr1 5107928 5108016 -277085648 - L2 LINE L2 -4 3268 3185 1293 215 45 53 chr1 5108063 5108439 -277085225 + MLT1D LTR MaLR 1 373 -132 1439 138 58 7 chr1 5108440 5108629 -277085035 - MER61D LTR ERV1 0 501 323 468 0 0 0 chr1 5108629 5108681 -277084983 + (TG)n Simple_repeat Simple_repeat 2 53 0 1439 138 58 7 chr1 5108681 5108897 -277084767 - MER61D LTR ERV1 -178 323 1 528 208 25 0 chr1 5108901 5109021 -277084643 + MLT1D LTR MaLR 375 497 -8 408 278 0 53 chr1 5109057 5109208 -277084456 - L2 LINE L2 0 3313 3171 26 50 0 0 chr1 5110646 5110686 -277082978 + AT_rich Low_complexity Low_complexity 1 40 0 231 200 0 0 chr1 5111322 5111367 -277082297 + (CCCTG)n Simple_repeat Simple_repeat 4 48 0 254 269 172 59 chr1 5111367 5111757 -277081907 + LTR16A1 LTR ERVL 18 451 -6 567 236 50 0 chr1 5111805 5111945 -277081719 + MLT1C LTR MaLR 4 150 -240 508 266 156 0 chr1 5112178 5112370 -277081294 + MER31B LTR ERV1 220 441 -25 1105 218 27 27 chr1 5112395 5112693 -277080971 + MLT1C LTR MaLR 166 463 -4 2019 169 21 3 chr1 5112768 5113105 -277080559 + MER61A LTR ERV1 1 343 0 234 315 11 44 chr1 5114299 5114480 -277079184 + (CCCCG)n Simple_repeat Simple_repeat 5 179 0 215 83 0 83 chr1 5115288 5115336 -277078328 + (TG)n Simple_repeat Simple_repeat 1 44 0 201 217 0 0 chr1 5115476 5115559 -277078105 + (TG)n Simple_repeat Simple_repeat 1 83 0 180 204 27 48 chr1 5115724 5115871 -277077793 + (TATATG)n Simple_repeat Simple_repeat 1 144 0 490 257 0 22 chr1 5116091 5116274 -277077390 + (CATA)n Simple_repeat Simple_repeat 1 179 0 237 296 0 0 chr1 5116268 5116366 -277077298 + (TA)n Simple_repeat Simple_repeat 2 99 0 * 538 231 0 22 chr1 5116380 5116562 -277077102 + (CATA)n Simple_repeat Simple_repeat 3 180 0 486 190 0 0 chr1 5117155 5117234 -277076430 + MER21B LTR ERV1 12 90 -773 2157 249 60 18 chr1 5117360 5117982 -277075682 + MER21B LTR ERV1 138 785 -78 1748 185 3 55 chr1 5118170 5118329 -277075335 + MLT1A1 LTR MaLR 1 167 -198 959 128 0 0 chr1 5118329 5118462 -277075202 + FLAM_C SINE Alu 1 133 0 1748 185 3 55 chr1 5118462 5118681 -277074983 + MLT1A1 LTR MaLR 167 359 -6 289 216 27 14 chr1 5119104 5119178 -277074486 + MLT1I LTR MaLR 308 382 -27 2294 132 3 0 chr1 5120225 5120535 -277073129 + AluSp SINE Alu 1 311 -2 186 155 36 179 chr1 5122485 5122569 -277071095 + L3 LINE CR1 227 298 -1279 2817 190 52 34 chr1 5122729 5122779 -277070885 - L1MB3 LINE L1 0 6183 6135 2326 90 7 7 chr1 5122779 5123079 -277070585 - AluSx SINE Alu -12 300 1 2084 144 3 0 chr1 5123082 5123374 -277070290 - AluSx SINE Alu -19 293 1 2817 190 52 34 chr1 5123374 5124029 -277069635 - L1MB3 LINE L1 -49 6134 5461 792 202 10 52 chr1 5124029 5124222 -277069442 + MER58A DNA MER1_type 40 224 0 417 226 0 0 chr1 5124314 5124407 -277069257 + L1MA7 LINE L1 6196 6288 -3 198 302 16 16 chr1 5124885 5124948 -277068716 - MIR SINE MIR -2 260 198 587 216 144 10 chr1 5125027 5125235 -277068429 - MER69 DNA AcHobo -2 2524 2289 1337 153 97 0 chr1 5125326 5125574 -277068090 + MLT1B LTR MaLR 1 272 -118 2607 86 77 20 chr1 5125574 5125954 -277067710 - MSTA LTR MaLR 0 428 22 1934 140 184 11 chr1 5125954 5126319 -277067345 + MSTA LTR MaLR 1 428 0 2607 86 77 20 chr1 5126319 5126343 -277067321 - MSTA LTR MaLR -406 22 1 694 177 0 0 chr1 5126343 5126466 -277067198 + MLT1B LTR MaLR 268 390 0 544 238 60 38 chr1 5126466 5126651 -277067013 - MER69 DNA AcHobo -2170 356 168 980 221 0 0 chr1 5127960 5128159 -277065505 + MLT1B LTR MaLR 192 390 0 444 327 30 49 chr1 5128165 5128431 -277065233 - L1MB3 LINE L1 -913 5233 4973 3103 160 78 66 chr1 5128985 5129668 -277063996 - LTR8 LTR ERV1 0 691 1 555 333 83 22 chr1 5129823 5130501 -277063163 - L1MB3 LINE L1 -1438 4708 3990 334 269 211 27 chr1 5130850 5131073 -277062591 - L2 LINE L2 -804 2510 2247 326 326 30 68 chr1 5131170 5131487 -277062177 - L1MEd LINE L1 -5366 753 393 211 79 79 87 chr1 5131657 5131783 -277061881 + (CACCT)n Simple_repeat Simple_repeat 1 125 0 466 280 86 5 chr1 5131908 5132094 -277061570 - L1MEd LINE L1 -5917 202 2 326 302 22 7 chr1 5132656 5132795 -277060869 + MLT2C1 LTR ERVL 58 198 -199 * 1277 246 96 46 chr1 5132682 5133203 -277060461 + MLT1E2 LTR MaLR 80 626 0 2291 113 0 0 chr1 5133230 5133532 -277060132 - AluSg SINE Alu -8 302 1 258 331 138 37 chr1 5134116 5134412 -277059252 + L2 LINE L2 2863 3188 -84 2413 145 54 2 chr1 5134763 5135225 -277058439 + LTR19A LTR ERV1 1 486 0 431 200 16 96 chr1 5135303 5135428 -277058236 + MER58A DNA MER1_type 5 119 0 638 131 0 10 chr1 5135449 5135548 -277058116 + MER4A LTR ERV1 1 98 -566 1930 113 3 24 chr1 5135548 5135901 -277057763 + MER4A LTR ERV1 261 664 0 262 269 0 13 chr1 5135906 5135984 -277057680 + MER58A DNA MER1_type 145 221 -3 273 319 21 49 chr1 5136112 5136256 -277057408 + MIR SINE MIR 72 211 -51 21 0 0 0 chr1 5137048 5137069 -277056595 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 5137193 5137214 -277056450 + AT_rich Low_complexity Low_complexity 1 21 0 1077 152 11 0 chr1 5137221 5137405 -277056259 - L1PA15 LINE L1 -13 6152 5967 301 310 70 14 chr1 5137520 5137662 -277056002 + MIR SINE MIR 70 219 -43 2468 99 0 0 chr1 5137908 5138221 -277055443 + AluSq SINE Alu 1 313 0 1489 194 19 16 chr1 5138310 5138424 -277055240 - L1MA8 LINE L1 -4 6287 6175 2516 144 16 11 chr1 5138424 5138867 -277054797 + MER65A LTR ERV1 1 445 0 1489 194 19 16 chr1 5138867 5139062 -277054602 - L1MA8 LINE L1 -116 6175 5977 1221 211 71 6 chr1 5139741 5140063 -277053601 - MER89 LTR ERV1 -9 550 208 847 178 29 11 chr1 5140270 5140444 -277053220 + MLT1A1 LTR MaLR 1 177 -188 1480 186 11 55 chr1 5140452 5140818 -277052846 - L1 LINE L1 -840 5306 4957 5403 140 3 21 chr1 5140820 5141441 -277052223 + L1MA6 LINE L1 5356 5955 -345 2033 132 10 23 chr1 5141441 5141751 -277051913 + AluY SINE Alu 1 306 -5 5403 140 3 21 chr1 5141751 5142091 -277051573 + L1MA6 LINE L1 5955 6300 0 1120 192 27 5 chr1 5142102 5142321 -277051343 + MLT1A1 LTR MaLR 142 365 0 241 236 22 67 chr1 5142963 5143052 -277050612 + L2 LINE L2 3187 3271 -1 204 254 16 32 chr1 5143316 5143379 -277050285 + MIR3 SINE MIR 15 76 -132 1989 168 0 0 chr1 5143486 5143790 -277049874 + AluJb SINE Alu 9 312 0 1917 246 17 2 chr1 5143872 5144335 -277049329 - L1MB5 LINE L1 -1 6173 5704 528 96 0 0 chr1 5144526 5144599 -277049065 + THE1B LTR MaLR 1 73 -291 1809 179 24 3 chr1 5144599 5144940 -277048724 + THE1A LTR MaLR 7 354 -1 2175 122 3 0 chr1 5145075 5145369 -277048295 - AluSc SINE Alu -14 295 1 1073 157 0 0 chr1 5145748 5145914 -277047750 + FRAM SINE Alu 1 166 0 189 375 0 29 chr1 5145983 5146087 -277047577 + L3 LINE CR1 1402 1502 -75 352 258 52 71 chr1 5146111 5146141 -277047523 - MIR SINE MIR -91 171 142 2249 129 7 0 chr1 5146141 5146444 -277047220 - AluSq SINE Alu -8 305 1 352 258 52 71 chr1 5146444 5146568 -277047096 - MIR SINE MIR -120 142 20 869 287 6 18 chr1 5146597 5146928 -277046736 - L1ME4a LINE L1 -203 5918 5592 341 345 72 52 chr1 5147312 5147796 -277045868 + MLT1J LTR MaLR 3 496 -15 245 382 89 21 chr1 5148084 5148275 -277045389 + MIR SINE MIR 47 250 -12 24 0 0 0 chr1 5149741 5149765 -277043899 + AT_rich Low_complexity Low_complexity 1 24 0 618 297 32 86 chr1 5150394 5150802 -277042862 + L2 LINE L2 2922 3307 -6 1081 225 29 29 chr1 5152032 5152348 -277041316 + LTR53 LTR ERVL 204 519 0 227 222 194 9 chr1 5152544 5152652 -277041012 + L2 LINE L2 3141 3268 -4 1833 187 11 125 chr1 5153344 5153365 -277040299 + L1MB8 LINE L1 5623 5645 -533 2284 102 36 33 chr1 5153365 5153728 -277039936 + THE1B LTR MaLR 1 364 0 1833 187 11 125 chr1 5153728 5153982 -277039682 + L1MB8 LINE L1 5645 5790 -388 2403 76 3 10 chr1 5153982 5154283 -277039381 + AluSg SINE Alu 1 299 -11 1833 187 11 125 chr1 5154283 5154632 -277039032 + L1MB8 LINE L1 5790 6177 -1 2272 102 0 0 chr1 5156179 5156492 -277037172 - AluSx SINE Alu 0 313 1 1181 182 40 16 chr1 5156658 5156911 -277036753 + MLT1B LTR MaLR 111 369 -21 1531 231 56 7 chr1 5157095 5157540 -277036124 - MLT1C LTR MaLR 0 467 1 21 36 0 0 chr1 5158669 5158697 -277034967 + AT_rich Low_complexity Low_complexity 1 28 0 506 235 0 3 chr1 5159277 5159580 -277034084 + (CA)n Simple_repeat Simple_repeat 1 301 0 2364 103 0 0 chr1 5159633 5159933 -277033731 + AluSq SINE Alu 1 300 -13 343 266 133 36 chr1 5160552 5160816 -277032848 - MLT1H1 LTR MaLR -10 539 189 300 146 0 0 chr1 5160817 5160865 -277032799 + MLT2B1 LTR ERVL 1 48 -472 978 213 21 28 chr1 5160866 5161194 -277032470 + MLT2B1 LTR ERVL 149 520 0 1895 145 37 14 chr1 5161227 5161397 -277032267 - AluSx SINE Alu -9 303 122 285 51 0 0 chr1 5161397 5161436 -277032228 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1895 145 37 14 chr1 5161436 5161561 -277032103 - AluSx SINE Alu -190 122 1 430 267 44 7 chr1 5161561 5161685 -277031979 - MLT1H1 LTR MaLR -423 132 1 1894 164 59 16 chr1 5162115 5162486 -277031178 - MLT1B LTR MaLR -3 387 1 26 30 0 0 chr1 5162731 5162764 -277030900 + AT_rich Low_complexity Low_complexity 1 33 0 281 243 81 27 chr1 5163682 5163793 -277029871 - MLT1K LTR MaLR -7 581 465 476 292 7 0 chr1 5163979 5164116 -277029548 + MIR SINE MIR 84 221 -41 432 301 20 33 chr1 5164322 5164475 -277029189 + MIR SINE MIR 96 246 -16 1557 259 45 87 chr1 5164728 5165716 -277027948 - L1MCc LINE L1 -4848 1574 657 1390 285 22 22 chr1 5165806 5166259 -277027405 - L1MCc LINE L1 -5954 469 17 505 294 72 21 chr1 5166259 5166453 -277027211 - MIR SINE MIR -57 205 2 327 347 41 0 chr1 5166619 5166766 -277026898 + MIR SINE MIR 8 160 -102 5093 112 38 17 chr1 5166778 5167643 -277026021 - L1PB2 LINE L1 -3 6148 5266 192 40 0 0 chr1 5167729 5167754 -277025910 + (TG)n Simple_repeat Simple_repeat 2 26 0 409 341 38 44 chr1 5167878 5168195 -277025469 - L2 LINE L2 -2 3311 2997 625 327 66 36 chr1 5168206 5168646 -277025018 + L2 LINE L2 2859 3311 -2 300 314 31 14 chr1 5169773 5169927 -277023737 - MLT1H1 LTR MaLR -1 554 400 254 211 84 0 chr1 5170171 5170242 -277023422 - MLT1H1 LTR MaLR -478 77 1 199 340 147 0 chr1 5171803 5171959 -277021705 - L2 LINE L2 -95 3177 2999 764 174 7 0 chr1 5174259 5174414 -277019250 + L1MB5 LINE L1 6017 6172 -2 213 255 138 0 chr1 5175347 5175441 -277018223 - L2 LINE L2 -5 3267 3161 962 209 134 110 chr1 5175473 5175919 -277017745 - MLT1C LTR MaLR -10 457 1 24 0 0 0 chr1 5175935 5175959 -277017705 + AT_rich Low_complexity Low_complexity 1 24 0 302 285 85 72 chr1 5176021 5176256 -277017408 - L2 LINE L2 -180 3092 2855 275 85 0 0 chr1 5178376 5178423 -277015241 - L1PA3 LINE L1 0 6155 6109 * 568 79 22 0 chr1 5178421 5178510 -277015154 + L1P2 LINE L1 5429 5519 -635 * 1622 42 12 6 chr1 5178508 5178787 -277014877 - L1P2 LINE L1 -716 5438 5159 596 215 94 54 chr1 5178806 5179029 -277014635 + L2 LINE L2 3082 3313 0 702 210 11 11 chr1 5179099 5179275 -277014389 - MER53 DNA DNA -13 176 1 718 317 189 18 chr1 5179318 5180078 -277013586 + L2 LINE L2 1610 2499 -815 2608 201 77 4 chr1 5180090 5180652 -277013012 + MER77 LTR ERV1 1 603 -2 722 227 145 0 chr1 5180959 5181131 -277012533 - MLT1D LTR MaLR 0 505 309 2035 172 36 27 chr1 5181244 5181792 -277011872 + MLT2A2 LTR ERVL 1 554 0 388 246 107 0 chr1 5181792 5181911 -277011753 - MLT1D LTR MaLR -329 138 7 324 310 26 26 chr1 5181918 5182073 -277011591 + L2 LINE L2 2895 3049 -264 260 276 143 0 chr1 5182373 5182471 -277011193 + L2 LINE L2 3202 3313 0 240 307 0 0 chr1 5184493 5184672 -277008992 + (CA)n Simple_repeat Simple_repeat 2 180 0 288 258 0 0 chr1 5184754 5184878 -277008786 + (CA)n Simple_repeat Simple_repeat 2 125 0 182 290 7 0 chr1 5184944 5185082 -277008582 + (CA)n Simple_repeat Simple_repeat 1 139 0 180 238 0 0 chr1 5185120 5185183 -277008481 + (CA)n Simple_repeat Simple_repeat 1 63 0 258 32 0 0 chr1 5185236 5185267 -277008397 + (TC)n Simple_repeat Simple_repeat 1 31 0 234 0 0 0 chr1 5185266 5185292 -277008372 + (CA)n Simple_repeat Simple_repeat 1 26 0 * 1187 265 61 82 chr1 5185856 5186397 -277007267 - MER21B LTR ERV1 -149 714 188 2230 106 3 3 chr1 5186397 5186690 -277006974 + AluSx SINE Alu 1 293 -19 1187 265 61 82 chr1 5186690 5186817 -277006847 - MER21B LTR ERV1 -675 188 60 1932 115 0 22 chr1 5187349 5187619 -277006045 - AluSx SINE Alu -14 298 35 273 319 132 24 chr1 5187934 5188185 -277005479 + L2 LINE L2 3021 3298 -15 2973 13 0 0 chr1 5188370 5188686 -277004978 - AluYb8 SINE Alu -2 316 1 200 316 26 0 chr1 5188845 5188921 -277004743 + L2 LINE L2 2292 2369 -945 1584 194 35 58 chr1 5189794 5190171 -277003493 - MLT1A2 LTR MaLR -4 370 3 613 284 77 37 chr1 5191449 5191605 -277002059 + L1MC4 LINE L1 6771 6919 -1123 2187 127 16 3 chr1 5191605 5191913 -277001751 + AluSx SINE Alu 1 312 0 613 284 77 37 chr1 5191913 5192213 -277001451 + L1MC4 LINE L1 6919 7245 -797 1639 174 18 12 chr1 5192224 5192552 -277001112 + MLT1B LTR MaLR 6 335 -55 674 241 119 53 chr1 5192689 5193008 -277000656 + L1MC4 LINE L1 7334 7673 -369 1190 207 171 7 chr1 5193559 5193868 -276999796 + MLT1A1 LTR MaLR 6 365 0 265 164 45 60 chr1 5193904 5193971 -276999693 - MER45 DNA AcHobo -951 89 24 651 150 34 10 chr1 5195039 5195247 -276998417 - L1MB1 LINE L1 0 6168 5923 * 765 191 75 5 chr1 5195246 5195434 -276998230 + L1MB1 LINE L1 5714 5914 -254 3520 37 105 0 chr1 5196450 5196909 -276996755 + L1PA4 LINE L1 5645 6151 -4 339 25 0 0 chr1 5196919 5196959 -276996705 + (A)n Simple_repeat Simple_repeat 1 40 0 820 157 7 41 chr1 5197163 5197181 -276996483 - AluJb SINE Alu -12 300 283 258 32 0 0 chr1 5197181 5197212 -276996452 + (TCCCC)n Simple_repeat Simple_repeat 1 31 0 485 31 0 16 chr1 5197212 5197276 -276996388 + (TTTTC)n Simple_repeat Simple_repeat 5 67 0 820 157 7 41 chr1 5197276 5197403 -276996261 - AluJb SINE Alu -27 285 159 279 0 0 0 chr1 5197448 5197479 -276996185 + (TG)n Simple_repeat Simple_repeat 2 32 0 477 170 21 17 chr1 5199108 5199285 -276994379 - MER20 DNA MER1_type -6 213 3 778 267 5 5 chr1 5200062 5200272 -276993392 + MER58 DNA MER1_type 27 236 -105 297 250 6 11 chr1 5200706 5200886 -276992778 + GA-rich Low_complexity Low_complexity 2 180 0 594 221 194 46 chr1 5203980 5204305 -276989359 + MLT1C LTR MaLR 34 406 -61 1301 289 12 0 chr1 5204396 5204732 -276988932 - MER58B DNA MER1_type -1 340 1 1093 226 50 61 chr1 5207308 5207769 -276985895 + MLT1C LTR MaLR 2 457 -10 370 277 54 0 chr1 5210101 5210213 -276983451 - L2 LINE L2 0 3313 3196 312 231 32 142 chr1 5210355 5210709 -276982955 - MLT1K LTR MaLR -340 248 7 * 1619 191 70 0 chr1 5210708 5211037 -276982627 + MLT2D LTR ERVL 8 359 -55 1046 22 22 43 chr1 5211074 5211258 -276982406 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 333 0 0 0 chr1 5211272 5211309 -276982355 + (TC)n Simple_repeat Simple_repeat 2 38 0 192 97 0 0 chr1 5211325 5211356 -276982308 + (GA)n Simple_repeat Simple_repeat 1 31 0 843 225 28 0 chr1 5212367 5212545 -276981119 - MER5A DNA MER1_type -4 185 3 327 104 0 0 chr1 5213064 5213112 -276980552 + (ATG)n Simple_repeat Simple_repeat 3 50 0 283 375 0 0 chr1 5213368 5213464 -276980200 + L2 LINE L2 2953 3048 -224 693 269 66 0 chr1 5213516 5213713 -276979951 + MER58A DNA MER1_type 1 210 -14 330 353 49 0 chr1 5213770 5213892 -276979772 + L2 LINE L2 3140 3267 -5 2855 233 35 9 chr1 5214243 5214879 -276978785 + MER82 DNA MER2_type 2 653 0 1073 267 50 11 chr1 5215419 5215778 -276977886 + L1MC4a LINE L1 5552 5924 -1884 2385 89 0 19 chr1 5217369 5217685 -276975979 + AluSg SINE Alu 1 310 0 2003 124 6 47 chr1 5218930 5219252 -276974412 + AluSx SINE Alu 1 309 -3 1982 192 5 13 chr1 5219676 5220051 -276973613 + MLT2D LTR ERVL 1 374 -40 411 21 0 0 chr1 5220051 5220099 -276973565 + (CA)n Simple_repeat Simple_repeat 1 48 0 1982 192 5 13 chr1 5220099 5220118 -276973546 + MLT2D LTR ERVL 374 392 -22 335 352 29 0 chr1 5220384 5220489 -276973175 + MIR SINE MIR 72 179 -83 1603 167 4 4 chr1 5221417 5221662 -276972002 + AluJb SINE Alu 2 246 -66 448 315 28 17 chr1 5221756 5221937 -276971727 + MIR SINE MIR 32 214 -48 965 283 114 0 chr1 5222256 5222669 -276970995 + L1MC5 LINE L1 5430 5889 -1919 798 128 138 26 chr1 5222767 5222908 -276970756 + L1MD3 LINE L1 6897 7067 -928 192 40 0 0 chr1 5222908 5222933 -276970731 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 798 128 138 26 chr1 5222933 5222986 -276970678 + L1MD3 LINE L1 7067 7113 -882 338 308 0 0 chr1 5222989 5223080 -276970584 + MLT1F1 LTR MaLR 35 125 -442 2538 213 20 19 chr1 5223080 5223198 -276970466 + L1MD3 LINE L1 7404 7520 -475 2722 107 0 6 chr1 5223198 5223564 -276970100 + THE1B LTR MaLR 1 364 0 2538 213 20 19 chr1 5223564 5224036 -276969628 + L1MD3 LINE L1 7520 7995 0 24 32 0 0 chr1 5224036 5224067 -276969597 + AT_rich Low_complexity Low_complexity 1 31 0 28 29 0 0 chr1 5224201 5224236 -276969428 + AT_rich Low_complexity Low_complexity 1 35 0 302 184 66 0 chr1 5224257 5224333 -276969331 + L1 LINE L1 4924 5004 -1142 578 323 54 17 chr1 5224567 5224990 -276968674 + L1MC5 LINE L1 6415 6852 -960 2254 128 0 6 chr1 5225113 5225426 -276968238 + AluSq SINE Alu 1 311 -2 269 303 62 78 chr1 5225633 5225850 -276967814 + L1M4 LINE L1 4544 4763 -1383 2024 142 0 37 chr1 5225850 5226174 -276967490 + AluSx SINE Alu 1 312 0 269 303 62 78 chr1 5226174 5226646 -276967018 + L1M4 LINE L1 4763 5222 -924 * 4065 212 87 16 chr1 5226636 5227115 -276966549 + L1ME3 LINE L1 4135 4579 -1567 288 0 0 0 chr1 5227115 5227147 -276966517 + (ATTG)n Simple_repeat Simple_repeat 1 32 0 4065 212 87 16 chr1 5227147 5227845 -276965819 + L1ME3 LINE L1 4579 5395 -751 1748 190 19 13 chr1 5227854 5228187 -276965477 + L1MB7 LINE L1 5784 6114 -70 243 0 0 0 chr1 5228187 5228214 -276965450 + (TTTAG)n Simple_repeat Simple_repeat 4 30 0 2190 122 0 0 chr1 5228215 5228503 -276965161 - AluSx SINE Alu -24 288 1 1748 190 19 13 chr1 5228503 5228541 -276965123 + L1MB7 LINE L1 6113 6159 -25 534 307 60 40 chr1 5228655 5229052 -276964612 + L1ME3 LINE L1 5462 5881 -289 2051 134 0 7 chr1 5229133 5229432 -276964232 + AluSx SINE Alu 1 297 -15 241 252 32 89 chr1 5229521 5229644 -276964020 + L1ME3 LINE L1 5969 6084 -78 1964 170 0 0 chr1 5229721 5230009 -276963655 + AluJb SINE Alu 5 292 -20 268 336 51 4 chr1 5230093 5230328 -276963336 + L1M4 LINE L1 4568 4813 -1333 336 281 119 19 chr1 5230400 5230560 -276963104 + L1M4 LINE L1 4937 5112 -1034 3085 157 51 4 chr1 5230638 5231186 -276962478 - MER7C DNA MER2_type -15 587 14 817 98 15 23 chr1 5231761 5231893 -276961771 + MLT1B LTR MaLR 251 381 -9 774 121 21 3 chr1 5232023 5232252 -276961412 + (TCTA)n Simple_repeat Simple_repeat 1 232 0 305 355 24 30 chr1 5232341 5232507 -276961157 + L2 LINE L2 2408 2572 -742 230 51 51 0 chr1 5232771 5232810 -276960854 + (CAGA)n Simple_repeat Simple_repeat 4 44 0 604 136 56 16 chr1 5232838 5233331 -276960333 + (CAGAGA)n Simple_repeat Simple_repeat 1 512 0 287 244 13 13 chr1 5233397 5233475 -276960189 + MLT1K LTR MaLR 484 561 -27 180 135 0 0 chr1 5235259 5235296 -276958368 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 2782 82 3 0 chr1 5240483 5240837 -276952827 - THE1A LTR MaLR 0 355 1 242 272 49 12 chr1 5240884 5240965 -276952699 - L2 LINE L2 -16 3256 3173 360 267 34 27 chr1 5241177 5241323 -276952341 + L2 LINE L2 2205 2351 -963 192 263 42 76 chr1 5241503 5241621 -276952043 + L2 LINE L2 2940 3053 -219 2493 42 0 6 chr1 5243725 5244038 -276949626 + AluY SINE Alu 1 311 0 498 221 47 47 chr1 5244403 5244552 -276949112 - MIR SINE MIR -69 193 45 1557 211 65 51 chr1 5244611 5245123 -276948541 + Charlie1b DNA MER1_type 3 521 -2 5405 123 49 8 chr1 5245269 5246128 -276947536 - L1PA16 LINE L1 0 6166 5273 241 259 37 25 chr1 5246652 5246733 -276946931 - MIR3 SINE MIR -23 185 104 259 290 167 58 chr1 5247392 5247740 -276945924 - L2 LINE L2 0 3272 2887 246 276 0 0 chr1 5248977 5249035 -276944629 + (CAT)n Simple_repeat Simple_repeat 2 59 0 759 278 77 78 chr1 5250139 5250474 -276943190 - MLT1G LTR MaLR -2 588 253 2013 130 3 0 chr1 5250474 5250773 -276942891 - AluSx SINE Alu -3 309 10 759 278 77 78 chr1 5250773 5251012 -276942652 - MLT1G LTR MaLR -337 253 15 214 209 23 0 chr1 5251088 5251131 -276942533 + L2 LINE L2 3210 3253 -19 1788 127 25 38 chr1 5251336 5251652 -276942012 - AluSx SINE Alu 0 312 1 1927 116 3 10 chr1 5251654 5251946 -276941718 - AluJo SINE Alu -22 290 1 2290 78 7 7 chr1 5252791 5253097 -276940567 + AluSq SINE Alu 1 306 -7 1793 156 85 16 chr1 5253738 5254103 -276939561 - MLT1B LTR MaLR 0 390 1 193 219 0 0 chr1 5254717 5254758 -276938906 + L2 LINE L2 2718 2758 -556 878 215 0 6 chr1 5255444 5255602 -276938062 + MIR SINE MIR 21 177 -85 274 133 33 67 chr1 5255674 5255734 -276937930 + MER110A LTR ERV1 81 138 -330 2138 159 30 30 chr1 5255848 5256212 -276937452 + THE1B LTR MaLR 1 364 0 771 263 117 4 chr1 5256226 5256500 -276937164 + MER110 LTR ERV1 173 477 -14 191 36 36 0 chr1 5257793 5257821 -276935843 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 845 222 23 54 chr1 5258626 5258847 -276934817 + MER20 DNA MER1_type 6 219 0 215 320 104 50 chr1 5259641 5259863 -276933801 + MIR SINE MIR 13 246 -16 544 158 30 139 chr1 5259939 5260104 -276933560 + MER103 DNA DNA 8 154 -12 662 308 182 12 chr1 5260105 5260745 -276932919 - L2 LINE L2 -4 3309 2556 1227 243 97 26 chr1 5260806 5261592 -276932072 - L1ME3A LINE L1 -29 6936 6055 326 220 207 21 chr1 5261572 5261775 -276931889 - L1MCc LINE L1 -4887 1536 1341 * 2050 116 24 0 chr1 5262347 5262641 -276931023 - AluSq SINE Alu -12 301 1 904 244 116 0 chr1 5262918 5263193 -276930471 - L2 LINE L2 -773 2541 2235 440 292 87 0 chr1 5263219 5263380 -276930284 - L2 LINE L2 -1034 2280 2106 388 234 19 0 chr1 5263463 5263570 -276930094 - L2 LINE L2 -1201 2113 2005 641 323 32 18 chr1 5263634 5263919 -276929745 - L2 LINE L2 -1174 2140 1852 2445 66 0 0 chr1 5264295 5264599 -276929065 - AluY SINE Alu -7 304 1 20469 111 11 14 chr1 5265190 5269152 -276924512 - L1PA8A LINE L1 0 6131 2183 2163 114 7 0 chr1 5269459 5269765 -276923899 - AluSc SINE Alu -1 308 1 257 277 53 11 chr1 5269826 5269920 -276923744 - HERVL LTR ERVL -4358 1296 1199 419 276 147 73 chr1 5270628 5270983 -276922681 - LTR67 LTR ERVL -175 382 2 26 64 0 0 chr1 5271028 5271075 -276922589 + AT_rich Low_complexity Low_complexity 1 47 0 279 0 0 0 chr1 5271386 5271417 -276922247 + (TC)n Simple_repeat Simple_repeat 1 31 0 186 309 154 40 chr1 5271779 5271928 -276921736 - L2 LINE L2 -591 2723 2558 1429 173 46 140 chr1 5272137 5272182 -276921482 - MLT2D LTR ERVL -1 413 365 306 0 0 0 chr1 5272182 5272216 -276921448 + (TA)n Simple_repeat Simple_repeat 2 35 0 1429 173 46 140 chr1 5272216 5272626 -276921038 - MLT2D LTR ERVL -49 365 1 207 0 0 0 chr1 5272757 5272780 -276920884 + (TC)n Simple_repeat Simple_repeat 1 23 0 204 311 62 62 chr1 5272868 5273029 -276920635 + L3 LINE CR1 1410 1570 -7 4206 78 40 52 chr1 5275911 5276528 -276917136 - LTR66 LTR ERVL 0 610 1 4004 97 7 3 chr1 5276528 5277202 -276916462 - HERVL66 LTR ERVL 0 4329 3569 * 4876 123 6 20 chr1 5277189 5277903 -276915761 - HERVL66 LTR ERVL -972 3357 2654 2852 75 6 0 chr1 5277883 5278243 -276915421 - HERVL66 LTR ERVL -2532 1797 1436 * 8302 98 16 11 chr1 5278243 5278482 -276915182 - HERVL66 LTR ERVL -3199 1130 894 2435 58 6 10 chr1 5278482 5278794 -276914870 - AluY SINE Alu 0 311 1 8302 98 16 11 chr1 5278794 5279678 -276913986 - HERVL66 LTR ERVL -3435 894 1 4429 55 62 5 chr1 5279678 5280255 -276913409 - LTR66 LTR ERVL 0 610 1 384 271 102 83 chr1 5281064 5281437 -276912227 + L2 LINE L2 2933 3312 -1 588 203 117 37 chr1 5282126 5282289 -276911375 - MLT1D LTR MaLR -329 176 1 30 0 0 0 chr1 5283270 5283300 -276910364 + AT_rich Low_complexity Low_complexity 1 30 0 214 310 0 0 chr1 5283482 5283540 -276910124 + L2 LINE L2 3239 3296 -17 297 282 109 0 chr1 5283912 5284022 -276909642 - L2 LINE L2 -4 3309 3188 5626 68 8 0 chr1 5285847 5286564 -276907100 + L1PA8 LINE L1 5444 6166 -6 35 24 0 0 chr1 5286603 5286645 -276907019 + AT_rich Low_complexity Low_complexity 1 42 0 2534 45 0 3 chr1 5287506 5287814 -276905850 + AluY SINE Alu 1 307 -4 220 239 171 11 chr1 5289213 5289301 -276904363 - MIR SINE MIR -130 132 31 4057 163 85 11 chr1 5291774 5292512 -276901152 - MER54B LTR ERVL 0 793 1 1246 313 115 34 chr1 5293867 5294762 -276898902 + L2 LINE L2 1854 2821 -493 1481 214 54 0 chr1 5294899 5295231 -276898433 - MLT1B LTR MaLR -4 386 37 1920 128 0 21 chr1 5295383 5295708 -276897956 - AluSq SINE Alu 0 319 1 1262 237 121 71 chr1 5296299 5296780 -276896884 - MLT1D LTR MaLR 0 505 1 188 303 84 58 chr1 5297762 5297917 -276895747 + MIR3 SINE MIR 4 162 -46 327 317 122 10 chr1 5297917 5298122 -276895542 + MIR SINE MIR 20 247 -15 241 336 0 44 chr1 5298694 5298807 -276894857 - MLT1K LTR MaLR 0 588 481 1089 261 37 35 chr1 5298844 5299184 -276894480 - MLT1C LTR MaLR -3 464 121 1498 179 17 21 chr1 5299184 5299475 -276894189 - AluJo SINE Alu -22 290 1 1089 261 37 35 chr1 5299475 5299509 -276894155 - MLT1C LTR MaLR -346 121 89 263 279 0 0 chr1 5300563 5300631 -276893033 + C-rich Low_complexity Low_complexity 1 68 0 192 217 17 40 chr1 5305113 5305198 -276888466 - MIR SINE MIR -122 86 34 713 259 80 5 chr1 5306284 5306496 -276887168 + L1ME2 LINE L1 5937 6164 0 196 51 26 26 chr1 5306626 5306665 -276886999 + (TTTTTA)n Simple_repeat Simple_repeat 2 40 0 744 50 0 0 chr1 5306672 5306772 -276886892 - L1PA5 LINE L1 -112 6042 5943 354 226 18 113 chr1 5306827 5306995 -276886669 - L1MCa LINE L1 -4348 2078 1927 2154 108 0 3 chr1 5307033 5307338 -276886326 - AluSq SINE Alu -9 304 1 309 274 55 48 chr1 5307366 5307512 -276886152 + L1MCa LINE L1 1933 2079 -4347 1692 213 75 59 chr1 5307664 5308245 -276885419 + MER114 LTR ERV 2 595 -53 1623 184 37 0 chr1 5308245 5308539 -276885125 + AluJb SINE Alu 1 305 -7 1692 213 75 59 chr1 5308539 5308581 -276885083 + MER114 LTR ERV 595 635 -13 1926 138 0 0 chr1 5308767 5309095 -276884569 + AluSq SINE Alu 1 328 0 2385 75 0 3 chr1 5309377 5309682 -276883982 - AluSq SINE Alu -9 304 1 1847 129 0 7 chr1 5309759 5310038 -276883626 - AluSx SINE Alu -15 297 21 540 302 123 19 chr1 5312221 5312529 -276881135 - MLT1J2 LTR MaLR -40 410 71 1906 181 101 15 chr1 5312668 5313066 -276880598 - MER70A LTR ERVL 0 472 41 316 319 9 26 chr1 5313249 5313365 -276880299 - MIR SINE MIR -136 126 13 209 300 134 69 chr1 5314178 5314455 -276879209 - L2 LINE L2 0 3272 2978 356 287 43 24 chr1 5314752 5314916 -276878748 - MER63A DNA MER1_type -2 208 42 266 219 98 12 chr1 5316200 5316212 -276877452 + MER53 DNA DNA 1 19 -170 265 218 81 11 chr1 5316212 5316299 -276877365 - MER53 DNA DNA -3 186 94 279 180 0 16 chr1 5316549 5316610 -276877054 + MER53 DNA DNA 128 187 -2 202 218 55 0 chr1 5316615 5316670 -276876994 + MIR SINE MIR 88 145 -63 903 223 130 31 chr1 5317340 5317826 -276875838 + MLT1E1 LTR MaLR 1 648 -6 225 0 0 0 chr1 5317981 5318006 -276875658 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 777 291 57 10 chr1 5319268 5319564 -276874100 - MER77 LTR ERV1 -4 601 292 1659 201 93 50 chr1 5320189 5320672 -276872992 - MLT1D LTR MaLR -1 504 1 184 354 41 34 chr1 5320710 5320857 -276872807 + L2 LINE L2 3100 3247 -25 343 136 60 87 chr1 5320884 5321068 -276872596 + (CACAG)n Simple_repeat Simple_repeat 1 179 0 407 5 0 135 chr1 5321127 5321312 -276872352 + (CA)n Simple_repeat Simple_repeat 1 160 0 328 145 51 96 chr1 5321336 5321709 -276871955 + (CACAG)n Simple_repeat Simple_repeat 1 356 0 1617 213 116 16 chr1 5322048 5322489 -276871175 - MER31A LTR ERV1 0 485 1 1956 127 38 0 chr1 5323962 5324253 -276869411 - AluSx SINE Alu -3 309 8 223 291 0 0 chr1 5324492 5324547 -276869117 + (CCCA)n Simple_repeat Simple_repeat 1 55 0 261 242 0 16 chr1 5324822 5324884 -276868780 + GA-rich Low_complexity Low_complexity 1 61 0 733 302 41 16 chr1 5325306 5325548 -276868116 - MIR SINE MIR -13 249 2 189 0 0 0 chr1 5325766 5325787 -276867877 + (T)n Simple_repeat Simple_repeat 1 21 0 1820 125 29 11 chr1 5327415 5327577 -276866087 - AluSx SINE Alu 0 303 132 2007 92 32 35 chr1 5327577 5327891 -276865773 - AluSq SINE Alu 0 313 1 1820 125 29 11 chr1 5327891 5328021 -276865643 - AluSx SINE Alu -171 132 6 1777 163 13 0 chr1 5328062 5328368 -276865296 - AluJb SINE Alu -2 310 1 319 302 0 8 chr1 5328625 5328754 -276864910 - L1M LINE L1 -747 5415 5288 191 180 60 0 chr1 5328775 5328825 -276864839 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 429 260 57 0 chr1 5328825 5329002 -276864662 - L1M4 LINE L1 -874 5272 5086 198 71 0 0 chr1 5329058 5329086 -276864578 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 184 340 0 0 chr1 5329322 5329372 -276864292 + MIR SINE MIR 141 190 -72 224 59 29 0 chr1 5329435 5329469 -276864195 + (CAT)n Simple_repeat Simple_repeat 1 35 0 22 0 0 0 chr1 5329599 5329621 -276864043 + AT_rich Low_complexity Low_complexity 1 22 0 1159 208 16 43 chr1 5329681 5330003 -276863661 - Charlie1 DNA MER1_type -303 2458 2146 1015 206 45 96 chr1 5330004 5330358 -276863306 - L1MB7 LINE L1 -2 6182 5847 274 211 0 0 chr1 5330421 5330478 -276863186 - Charlie1 DNA MER1_type -298 2463 2407 693 227 71 15 chr1 5330478 5330676 -276862988 - L1MB7 LINE L1 -322 5862 5654 1459 218 40 37 chr1 5330772 5331152 -276862512 + MLT1B LTR MaLR 1 381 -9 322 338 10 2 chr1 5332378 5332487 -276861177 - MIR SINE MIR -59 149 53 215 102 0 41 chr1 5332505 5332554 -276861110 + (CAAAAA)n Simple_repeat Simple_repeat 1 47 0 2092 110 7 0 chr1 5333412 5333704 -276859960 - AluSx SINE Alu -18 294 1 682 303 14 91 chr1 5333828 5334347 -276859317 - MLT1J LTR MaLR -8 503 25 227 329 0 0 chr1 5334924 5334994 -276858670 + MIR SINE MIR 141 210 -52 972 182 0 3 chr1 5335385 5336097 -276857567 + (TGG)n Simple_repeat Simple_repeat 1 709 0 1302 156 0 0 chr1 5336134 5336358 -276857306 - L1MA4 LINE L1 -5 6295 6072 907 268 36 13 chr1 5336783 5337085 -276856579 + MLT1I LTR MaLR 98 406 -3 225 196 0 0 chr1 5339701 5339747 -276853917 + (TG)n Simple_repeat Simple_repeat 2 47 0 1974 122 0 14 chr1 5339938 5340261 -276853403 + AluSx SINE Alu 1 319 0 1165 253 82 5 chr1 5340538 5340965 -276852699 + Charlie4a DNA MER1_type 25 484 -24 259 308 28 9 chr1 5341378 5341485 -276852179 - MIR SINE MIR -118 144 36 245 241 25 51 chr1 5342862 5343020 -276850644 + G-rich Low_complexity Low_complexity 3 156 0 31 88 0 0 chr1 5343031 5343111 -276850553 + GC_rich Low_complexity Low_complexity 1 80 0 27 49 0 0 chr1 5343480 5343521 -276850143 + GC_rich Low_complexity Low_complexity 1 41 0 23 68 0 0 chr1 5343568 5343612 -276850052 + GC_rich Low_complexity Low_complexity 1 44 0 28 29 0 0 chr1 5343625 5343660 -276850004 + GC_rich Low_complexity Low_complexity 1 35 0 49 66 0 0 chr1 5344108 5344199 -276849465 + GC_rich Low_complexity Low_complexity 1 91 0 22 0 0 0 chr1 5344465 5344487 -276849177 + GC_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr1 5346053 5346075 -276847589 + (TGGGGG)n Simple_repeat Simple_repeat 2 23 0 1371 176 30 62 chr1 5348015 5348065 -276845599 + L1MD1 LINE L1 5885 5935 -307 2541 168 8 70 chr1 5348065 5348583 -276845081 + MER66B LTR ERV1 1 486 0 1371 176 30 62 chr1 5348583 5348902 -276844762 + L1MD1 LINE L1 5935 6242 0 734 257 39 6 chr1 5349723 5349902 -276843762 - MIR SINE MIR -70 192 8 24 0 0 0 chr1 5350232 5350256 -276843408 + AT_rich Low_complexity Low_complexity 1 24 0 273 29 0 0 chr1 5350388 5350422 -276843242 + (TG)n Simple_repeat Simple_repeat 1 34 0 1034 311 50 10 chr1 5350426 5350924 -276842740 - L1MB7 LINE L1 -16 6168 5651 793 194 0 0 chr1 5351486 5351620 -276842044 - AluJo SINE Alu -178 134 1 695 254 100 12 chr1 5352329 5352569 -276841095 - MIR SINE MIR -1 261 1 183 358 154 0 chr1 5354075 5354198 -276839466 - L2 LINE L2 -5 3308 3167 2201 134 24 0 chr1 5355743 5356071 -276837593 - MER1B DNA MER1_type 0 337 2 1999 134 3 0 chr1 5356274 5356566 -276837098 + AluSx SINE Alu 1 293 -19 372 88 0 0 chr1 5356664 5356721 -276836943 + (TG)n Simple_repeat Simple_repeat 2 58 0 403 270 56 27 chr1 5356804 5356962 -276836702 - MIR SINE MIR -35 173 51 2377 206 34 9 chr1 5357390 5357640 -276836024 - L1MB5 LINE L1 -1 6173 5931 2166 107 55 30 chr1 5357640 5358003 -276835661 - THE1C LTR MaLR -3 372 1 2377 206 34 9 chr1 5358003 5358276 -276835388 - L1MB5 LINE L1 -243 5931 5637 340 250 103 17 chr1 5358290 5358406 -276835258 + MIR SINE MIR 22 147 -115 2175 116 0 0 chr1 5359428 5359729 -276833935 + AluSx SINE Alu 1 301 -11 1007 220 31 101 chr1 5361103 5361625 -276832039 + MLT1E2 LTR MaLR 61 626 0 239 321 0 12 chr1 5361684 5361768 -276831896 + CT-rich Low_complexity Low_complexity 2 84 0 453 179 50 184 chr1 5362264 5362482 -276831182 + MER53 DNA DNA 1 189 0 245 95 0 24 chr1 5362619 5362661 -276831003 + MER58A DNA MER1_type 42 82 -25 538 216 196 0 chr1 5362711 5362864 -276830800 + MER58A DNA MER1_type 42 224 0 1645 268 47 21 chr1 5363541 5364075 -276829589 - MER77 LTR ERV1 -4 601 54 2268 90 0 3 chr1 5365217 5365516 -276828148 + AluSx SINE Alu 1 298 -14 946 200 73 5 chr1 5366673 5366893 -276826771 - MLT1E LTR MaLR -54 539 305 761 219 78 10 chr1 5366933 5367138 -276826526 - MLT1E LTR MaLR -373 220 2 422 267 80 40 chr1 5367169 5367345 -276826319 - MIR SINE MIR 0 262 80 462 340 82 22 chr1 5367488 5367720 -276825944 + L2 LINE L2 3054 3299 -14 189 0 0 0 chr1 5367724 5367745 -276825919 + (TGAA)n Simple_repeat Simple_repeat 4 24 0 1741 186 76 14 chr1 5367814 5368111 -276825553 - MLT1C LTR MaLR 0 467 133 2054 215 50 45 chr1 5368111 5368151 -276825513 - MLT2B1 LTR ERVL 0 520 482 396 0 0 0 chr1 5368151 5368195 -276825469 + (TG)n Simple_repeat Simple_repeat 2 45 0 2054 215 50 45 chr1 5368195 5368671 -276824993 - MLT2B1 LTR ERVL -38 482 1 1741 186 76 14 chr1 5368671 5368808 -276824856 - MLT1C LTR MaLR -334 133 6 290 277 125 23 chr1 5370099 5370228 -276823436 + MIR SINE MIR 17 157 -56 505 246 127 0 chr1 5370285 5370427 -276823237 - MIR SINE MIR -75 187 28 294 194 0 0 chr1 5371010 5371077 -276822587 + (ATG)n Simple_repeat Simple_repeat 2 68 0 750 198 0 0 chr1 5371097 5371274 -276822390 + (ATG)n Simple_repeat Simple_repeat 3 179 0 533 333 53 0 chr1 5371430 5371619 -276822045 + MIR SINE MIR 36 234 -28 621 231 34 8 chr1 5371642 5371826 -276821838 - MER5A DNA MER1_type -7 171 1 215 243 0 43 chr1 5372315 5372385 -276821279 + GA-rich Low_complexity Low_complexity 1 67 0 197 309 161 0 chr1 5373030 5373111 -276820553 - MIR SINE MIR -119 143 50 487 221 26 19 chr1 5374553 5374693 -276818971 - MLT1B LTR MaLR 0 467 358 191 310 127 28 chr1 5374722 5374870 -276818794 + MIR SINE MIR 33 144 -64 273 119 0 0 chr1 5376134 5376176 -276817488 + (TTCA)n Simple_repeat Simple_repeat 1 42 0 2385 88 3 0 chr1 5376833 5377140 -276816524 + AluSx SINE Alu 1 308 -4 232 279 139 0 chr1 5377195 5377274 -276816390 - MIR SINE MIR -62 200 111 293 303 151 7 chr1 5378924 5379076 -276814588 - MIR SINE MIR -8 254 81 207 205 0 0 chr1 5380503 5380542 -276813122 - MIR SINE MIR -113 149 111 312 326 137 0 chr1 5380973 5381148 -276812516 + L2 LINE L2 2967 3165 -107 1211 241 90 6 chr1 5381952 5382317 -276811347 - MSTD LTR MaLR 0 396 1 285 312 24 16 chr1 5382761 5382886 -276810778 - L2 LINE L2 0 3272 3147 474 189 41 0 chr1 5383366 5383488 -276810176 + MER20 DNA MER1_type 5 131 -88 1546 174 87 3 chr1 5383884 5384229 -276809435 - MLT1B LTR MaLR -16 374 1 402 300 16 6 chr1 5385016 5385434 -276808230 + (TG)n Simple_repeat Simple_repeat 1 422 0 281 294 22 22 chr1 5385474 5385610 -276808054 + (TG)n Simple_repeat Simple_repeat 1 136 0 357 304 62 46 chr1 5385612 5385806 -276807858 + L3 LINE CR1 1274 1470 -107 255 385 15 0 chr1 5385936 5386071 -276807593 + MIR SINE MIR 36 172 -90 195 286 50 67 chr1 5386882 5387001 -276806663 - L3 LINE CR1 -5 1572 1456 356 356 34 7 chr1 5388132 5388281 -276805383 + MIR SINE MIR 110 262 0 342 269 76 70 chr1 5388646 5388817 -276804847 - MER5B DNA MER1_type -5 173 2 227 373 25 25 chr1 5389644 5389762 -276803902 - MIR SINE MIR -70 138 21 718 174 71 0 chr1 5389912 5390067 -276803597 - MER20 DNA MER1_type -48 171 6 7706 30 0 0 chr1 5392500 5393518 -276800146 - L1PA3 LINE L1 -1 6154 5136 1539 15 0 0 chr1 5393518 5393719 -276799945 + L1PA3 LINE L1 4930 5130 -1016 306 0 0 0 chr1 5393738 5393772 -276799892 + (T)n Simple_repeat Simple_repeat 1 34 0 1470 279 74 19 chr1 5393783 5394403 -276799261 + L1MC3 LINE L1 7129 7782 -3 1881 271 78 13 chr1 5395620 5396298 -276797366 - L1MB7 LINE L1 -18 6166 5445 2348 83 0 0 chr1 5396306 5396608 -276797056 - AluSc SINE Alu -7 302 1 343 314 6 6 chr1 5397613 5397785 -276795879 + (GTGTG)n Simple_repeat Simple_repeat 5 176 0 320 262 6 16 chr1 5398380 5398701 -276794963 + (CA)n Simple_repeat Simple_repeat 1 318 0 361 308 0 7 chr1 5398736 5398879 -276794785 + (CA)n Simple_repeat Simple_repeat 1 142 0 22 35 0 0 chr1 5400371 5400400 -276793264 + GC_rich Low_complexity Low_complexity 1 29 0 216 111 0 0 chr1 5400862 5400898 -276792766 + (CCA)n Simple_repeat Simple_repeat 1 36 0 206 331 48 28 chr1 5401473 5401618 -276792046 + L3b LINE CR1 1244 1391 -192 265 395 8 8 chr1 5403239 5403363 -276790301 + L3b LINE CR1 1328 1451 -132 363 366 45 18 chr1 5403625 5403746 -276789918 + MIR SINE MIR 33 164 -98 2071 118 10 3 chr1 5403746 5404042 -276789622 + AluSp SINE Alu 1 298 -15 363 366 45 18 chr1 5404042 5404144 -276789520 + MIR SINE MIR 164 262 0 495 325 123 5 chr1 5404618 5404821 -276788843 + MIR SINE MIR 36 262 0 897 168 0 0 chr1 5404834 5405013 -276788651 + (ATG)n Simple_repeat Simple_repeat 1 179 0 509 185 8 0 chr1 5405025 5405144 -276788520 + (ATG)n Simple_repeat Simple_repeat 1 120 0 2269 105 7 0 chr1 5406819 5407123 -276786541 - AluSc SINE Alu -3 306 1 232 326 33 22 chr1 5407960 5408052 -276785612 + MIR3 SINE MIR 95 187 -21 191 406 41 16 chr1 5408849 5408972 -276784692 + MIR SINE MIR 78 203 -59 210 193 53 18 chr1 5409542 5409599 -276784065 - MIR SINE MIR -130 78 20 558 314 73 55 chr1 5410082 5410588 -276783076 - MER20B DNA MER1_type -7 776 262 623 255 176 5 chr1 5410858 5411159 -276782505 - MLT1C LTR MaLR -10 495 129 185 297 187 65 chr1 5411450 5412267 -276781397 - L2 LINE L2 -823 2491 1575 1805 192 41 0 chr1 5413971 5414345 -276779319 - MLT1B LTR MaLR 0 467 1 296 258 65 21 chr1 5414969 5415062 -276778602 - MER5A DNA MER1_type -29 160 64 260 225 75 83 chr1 5414972 5415092 -276778572 + MER5A DNA MER1_type 44 162 -27 * 687 241 162 98 chr1 5415950 5416493 -276777171 + MLT1E LTR MaLR 11 588 -5 1200 211 60 3 chr1 5417856 5418154 -276775510 - MLT1B LTR MaLR -71 319 5 396 223 86 22 chr1 5418163 5418302 -276775362 - MLT1C LTR MaLR -313 154 7 23 0 0 0 chr1 5419377 5419400 -276774264 + AT_rich Low_complexity Low_complexity 1 23 0 2342 106 0 0 chr1 5419411 5419723 -276773941 - AluSx SINE Alu 0 312 1 288 314 74 16 chr1 5421778 5421899 -276771765 - L2 LINE L2 0 3272 3145 472 269 66 28 chr1 5422642 5422824 -276770840 - MIR SINE MIR -27 235 47 555 271 90 6 chr1 5424328 5424505 -276769159 + MIR SINE MIR 60 251 -11 243 338 14 50 chr1 5424931 5425070 -276768594 + L2 LINE L2 3180 3313 0 1778 156 3 29 chr1 5425954 5426269 -276767395 + AluJo SINE Alu 1 307 -5 315 363 131 2 chr1 5426799 5427210 -276766454 - L2 LINE L2 -340 2974 2511 217 200 0 33 chr1 5428048 5428108 -276765556 + T-rich Low_complexity Low_complexity 2 59 0 2834 186 16 27 chr1 5428356 5428846 -276764818 + L1MB3 LINE L1 5640 6125 -58 2483 46 0 3 chr1 5428846 5429148 -276764516 + AluY SINE Alu 1 301 -10 2834 186 16 27 chr1 5429148 5429206 -276764458 + L1MB3 LINE L1 6125 6182 -1 886 251 171 6 chr1 5429556 5429907 -276763757 - MLT1C LTR MaLR -6 461 53 2681 233 106 6 chr1 5429946 5430852 -276762812 + L1MC4 LINE L1 6568 7668 -374 222 91 0 0 chr1 5431881 5431914 -276761750 + (TCCA)n Simple_repeat Simple_repeat 2 34 0 312 188 0 0 chr1 5432932 5432996 -276760668 + (CA)n Simple_repeat Simple_repeat 1 64 0 226 328 16 8 chr1 5433036 5433158 -276760506 + (CA)n Simple_repeat Simple_repeat 1 123 0 249 257 28 46 chr1 5434215 5434324 -276759340 + MIR SINE MIR 46 152 -110 1260 241 55 40 chr1 5434332 5434785 -276758879 - MLT1C LTR MaLR -1 466 7 185 369 131 6 chr1 5435859 5436035 -276757629 + L2 LINE L2 1046 1243 -2071 2081 116 7 13 chr1 5436050 5436360 -276757304 + AluSx SINE Alu 1 308 -4 2322 106 0 0 chr1 5436808 5437120 -276756544 + AluSx SINE Alu 1 312 0 743 245 38 52 chr1 5437120 5437332 -276756332 + MLT1A1 LTR MaLR 126 334 -31 198 353 43 9 chr1 5437600 5437716 -276755948 + MIR SINE MIR 27 146 -62 278 344 0 6 chr1 5438087 5438244 -276755420 + (TG)n Simple_repeat Simple_repeat 2 157 0 297 222 0 0 chr1 5438297 5438396 -276755268 + (TG)n Simple_repeat Simple_repeat 2 100 0 258 250 0 0 chr1 5438507 5438595 -276755069 + (TG)n Simple_repeat Simple_repeat 1 88 0 257 291 111 34 chr1 5439834 5439951 -276753713 - L2 LINE L2 0 3272 3147 358 194 10 10 chr1 5440476 5440574 -276753090 + GA-rich Low_complexity Low_complexity 3 100 0 189 247 54 86 chr1 5441656 5441749 -276751915 - MIR3 SINE MIR -48 160 71 24 77 0 0 chr1 5441783 5441835 -276751829 + AT_rich Low_complexity Low_complexity 1 52 0 257 289 43 68 chr1 5441856 5441916 -276751748 - L1MCc LINE L1 -4914 1509 1449 2240 94 3 0 chr1 5441916 5442214 -276751450 - AluSp SINE Alu -14 299 1 257 289 43 68 chr1 5442214 5442388 -276751276 - L1MCc LINE L1 -4974 1449 1281 1264 261 59 0 chr1 5442406 5442728 -276750936 + MER58B DNA MER1_type 1 341 0 2501 153 10 72 chr1 5443960 5444477 -276749187 - MER31A LTR ERV1 0 485 1 295 200 158 42 chr1 5445036 5445131 -276748533 + MER103 DNA DNA 17 122 -44 280 280 8 51 chr1 5445670 5445788 -276747876 - MLT1H LTR MaLR -196 353 241 382 282 13 39 chr1 5446005 5446161 -276747503 + L2 LINE L2 3161 3312 -1 2398 135 13 21 chr1 5446196 5446574 -276747090 + THE1C LTR MaLR 1 375 0 2366 99 24 44 chr1 5446662 5447045 -276746619 - THE1C LTR MaLR 0 375 1 654 211 0 0 chr1 5448536 5448716 -276744948 + (TG)n Simple_repeat Simple_repeat 1 180 0 253 224 75 0 chr1 5449244 5449311 -276744353 - MER58A DNA MER1_type 0 224 153 3378 96 7 20 chr1 5449907 5450366 -276743298 - MLT2A2 LTR ERVL 0 453 1 836 91 0 0 chr1 5450366 5450487 -276743177 - HERVL-A2 LTR ERVL 0 5654 5534 1629 236 102 18 chr1 5450641 5451094 -276742570 + MER77 LTR ERV1 108 598 -7 270 273 231 0 chr1 5451102 5451223 -276742441 + MIR SINE MIR 81 229 -33 490 236 28 21 chr1 5451445 5451589 -276742075 - MER20 DNA MER1_type -48 171 27 1313 188 4 4 chr1 5451819 5452053 -276741611 + MLT2B2 LTR ERVL 1 234 -281 514 199 11 28 chr1 5452064 5452240 -276741424 + CT-rich Low_complexity Low_complexity 1 173 0 1129 199 19 25 chr1 5452251 5452566 -276741098 + MLT2B2 LTR ERVL 247 515 0 1080 211 9 5 chr1 5454451 5454664 -276739000 + MER58A DNA MER1_type 7 220 -4 749 206 9 0 chr1 5455549 5455891 -276737773 + (CAT)n Simple_repeat Simple_repeat 1 345 0 941 163 6 0 chr1 5455903 5456081 -276737583 + (CAT)n Simple_repeat Simple_repeat 1 179 0 26 50 0 0 chr1 5460407 5460447 -276733217 + AT_rich Low_complexity Low_complexity 1 40 0 274 211 3 0 chr1 5464547 5464613 -276729051 - MIR SINE MIR -55 153 86 369 226 38 19 chr1 5464701 5464807 -276728857 - MIR SINE MIR -122 140 33 218 104 0 21 chr1 5466361 5466409 -276727255 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 566 51 13 0 chr1 5466914 5466992 -276726672 + (TC)n Simple_repeat Simple_repeat 2 80 0 771 77 0 0 chr1 5467666 5467770 -276725894 - AluY SINE Alu 0 311 208 227 254 8 108 chr1 5467965 5468095 -276725569 + MER94 DNA DNA 4 120 -14 950 226 39 42 chr1 5468161 5468205 -276725459 - L1MB3 LINE L1 -3 6180 6137 2196 81 44 0 chr1 5468205 5468500 -276725164 + AluSx SINE Alu 1 308 -4 950 226 39 42 chr1 5468500 5468738 -276724926 - L1MB3 LINE L1 -46 6137 5899 1449 128 22 0 chr1 5468962 5469189 -276724475 - AluSg/x SINE Alu 0 312 81 285 323 31 23 chr1 5469653 5469783 -276723881 + MER5A DNA MER1_type 18 148 -41 * 361 273 45 30 chr1 5469680 5469812 -276723852 - MER5A DNA MER1_type -32 157 24 241 26 53 0 chr1 5470908 5470946 -276722718 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 213 214 0 0 chr1 5471352 5471394 -276722270 + (CATA)n Simple_repeat Simple_repeat 4 45 0 217 246 15 31 chr1 5471539 5471604 -276722060 + (CA)n Simple_repeat Simple_repeat 1 64 0 469 223 46 9 chr1 5471780 5471891 -276721773 + L1MC4 LINE L1 1978 6985 -1337 392 322 0 0 chr1 5471817 5471907 -276721757 - L1MC4 LINE L1 -1339 6703 6614 * 305 294 88 10 chr1 5471898 5472000 -276721664 + L1MC4 LINE L1 6939 7048 -1274 * 192 315 91 55 chr1 5475453 5475672 -276717992 - L2 LINE L2 -2 3270 3044 200 276 0 17 chr1 5475672 5475730 -276717934 + GA-rich Low_complexity Low_complexity 6 62 0 261 0 0 0 chr1 5478130 5478159 -276715505 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 360 0 0 0 chr1 5479259 5479299 -276714365 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 204 184 0 0 chr1 5480843 5480892 -276712772 + A-rich Low_complexity Low_complexity 1 49 0 874 191 91 0 chr1 5481485 5481684 -276711980 + MER20 DNA MER1_type 1 217 -2 1623 174 7 3 chr1 5482181 5482474 -276711190 - AluJo SINE Alu -18 294 1 699 277 40 0 chr1 5483761 5483963 -276709701 + MER20 DNA MER1_type 1 210 -9 1654 171 62 64 chr1 5484137 5484604 -276709060 - MLT1C LTR MaLR 0 467 2 2334 103 57 14 chr1 5487021 5487370 -276706294 + THE1B LTR MaLR 1 364 0 213 315 14 0 chr1 5487881 5487954 -276705710 + CT-rich Low_complexity Low_complexity 2 75 0 554 307 12 0 chr1 5488207 5488370 -276705294 - MIR SINE MIR -18 244 80 1310 177 89 86 chr1 5490551 5490946 -276702718 + MSTD LTR MaLR 1 396 0 449 244 83 24 chr1 5492455 5492687 -276700977 - MLT1F LTR MaLR -5 537 311 222 348 59 17 chr1 5492718 5492836 -276700828 + MIR SINE MIR 108 230 -32 621 359 113 0 chr1 5492858 5493176 -276700488 + L3 LINE CR1 1221 1574 -3 326 310 32 133 chr1 5493250 5493514 -276700150 - L2 LINE L2 0 3272 3062 2441 168 18 18 chr1 5493514 5493948 -276699716 + Tigger2a DNA MER2_type 1 434 0 326 310 32 133 chr1 5493948 5494089 -276699575 - L2 LINE L2 -210 3062 2908 267 321 148 29 chr1 5494255 5494532 -276699132 - L2 LINE L2 -716 2598 2289 2745 291 76 42 chr1 5494629 5495195 -276698469 + L1ME1 LINE L1 68 613 -5783 1809 168 26 0 chr1 5495195 5495499 -276698165 + AluJo SINE Alu 1 312 0 2745 291 76 42 chr1 5495499 5496623 -276697041 + L1ME1 LINE L1 613 1841 -4555 2698 93 50 24 chr1 5496623 5497040 -276696624 + MSTA LTR MaLR 1 428 0 2745 291 76 42 chr1 5497040 5497392 -276696272 + L1ME1 LINE L1 1841 2180 -4216 1093 183 139 40 chr1 5497410 5497711 -276695953 + L1MC1 LINE L1 58 388 -6038 6154 197 31 5 chr1 5497712 5497831 -276695833 + L1MC1 LINE L1 4405 4519 -2094 231 36 0 0 chr1 5497831 5497859 -276695805 + (CA)n Simple_repeat Simple_repeat 1 28 0 6154 197 31 5 chr1 5497859 5499883 -276693781 + L1MC1 LINE L1 4519 6608 -5 7471 242 77 43 chr1 5499892 5500016 -276693648 + L1ME1 LINE L1 2179 2297 -3938 180 0 0 0 chr1 5500016 5500036 -276693628 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 721 241 39 15 chr1 5500037 5500240 -276693424 + MER63A DNA MER1_type 2 209 -1 7471 242 77 43 chr1 5500240 5501651 -276692013 + L1ME1 LINE L1 2297 3659 -2576 360 0 0 0 chr1 5501651 5501691 -276691973 + (CA)n Simple_repeat Simple_repeat 2 41 0 7471 242 77 43 chr1 5501691 5504120 -276689544 + L1ME1 LINE L1 3659 6230 -5 1552 171 13 17 chr1 5504125 5504423 -276689241 - AluJo SINE Alu -15 297 1 5360 81 3 1 chr1 5504735 5505416 -276688248 + LTR8 LTR ERV1 1 682 -9 1972 190 54 30 chr1 5505570 5506113 -276687551 + MLT2A2 LTR ERVL 1 554 0 1580 243 133 39 chr1 5506126 5506211 -276687453 + L1ME3 LINE L1 5264 5340 -830 2629 130 36 25 chr1 5506211 5506687 -276686977 - MER31A LTR ERV1 0 485 5 1580 243 133 39 chr1 5506687 5507012 -276686652 + L1ME3 LINE L1 5340 5633 -537 2476 163 74 0 chr1 5507012 5507447 -276686217 - LTR24 LTR ERV1 0 467 1 1580 243 133 39 chr1 5507447 5507665 -276685999 + L1ME3 LINE L1 5633 5962 -208 3554 112 21 41 chr1 5507747 5508328 -276685336 - LTR24B LTR ERV1 -7 569 1 279 306 8 8 chr1 5508354 5508478 -276685186 + L1ME3 LINE L1 6020 6143 -27 541 260 73 113 chr1 5508480 5509045 -276684619 + LTR48B LTR ERV1 1 542 0 203 282 64 26 chr1 5509120 5509198 -276684466 + MER91B DNA MER1_type 1 81 -109 210 326 22 11 chr1 5509496 5509585 -276684079 - MIR SINE MIR -59 149 60 4280 133 18 32 chr1 5510109 5510825 -276682839 + MER50 LTR ERV1 1 706 -28 761 175 7 35 chr1 5511003 5511029 -276682635 - MER4D LTR ERV1 -7 896 871 2394 162 25 23 chr1 5511029 5511462 -276682202 + MER57B LTR ERV1 1 434 0 761 175 7 35 chr1 5511462 5511578 -276682086 - MER4D LTR ERV1 -32 871 758 1328 112 31 40 chr1 5511602 5511826 -276681838 - MER50 LTR ERV1 -306 428 207 241 302 0 0 chr1 5511826 5511912 -276681752 + L1MC4 LINE L1 6618 6703 -1339 207 0 0 0 chr1 5511914 5511937 -276681727 + (CA)n Simple_repeat Simple_repeat 2 24 0 662 122 10 0 chr1 5511958 5512056 -276681608 - AluSg/x SINE Alu -81 231 133 1887 165 3 0 chr1 5512057 5512366 -276681298 - AluSq SINE Alu -3 310 1 4832 127 10 32 chr1 5512367 5513144 -276680520 - MER4D LTR ERV1 -140 763 4 2554 159 29 31 chr1 5513771 5514275 -276679389 + MER41B LTR ERV1 140 478 0 4689 66 5 0 chr1 5515104 5515692 -276677972 + LTR10C LTR ERV1 1 591 0 198 0 0 0 chr1 5515971 5515993 -276677671 + (CA)n Simple_repeat Simple_repeat 2 23 0 302 294 78 39 chr1 5519244 5519397 -276674267 + MIR SINE MIR 70 228 -34 737 247 18 12 chr1 5519672 5519842 -276673822 - MER45A DNA AcHobo 0 178 8 236 240 48 77 chr1 5519911 5520015 -276673649 - MIR SINE MIR -73 189 89 369 270 227 11 chr1 5520160 5520345 -276673319 + MIR SINE MIR 12 236 -26 229 106 21 85 chr1 5520672 5520719 -276672945 + L2 LINE L2 3199 3242 -71 281 118 20 0 chr1 5520721 5520772 -276672892 + MADE1 DNA Mariner 2 53 -27 331 119 119 17 chr1 5520780 5520839 -276672825 + L2 LINE L2 3242 3306 -7 1845 170 5 86 chr1 5521114 5521350 -276672314 - MLT1A1 LTR MaLR -2 363 170 1908 139 7 3 chr1 5521350 5521637 -276672027 - AluSx SINE Alu -24 288 1 1845 170 5 86 chr1 5521637 5521795 -276671869 - MLT1A1 LTR MaLR -195 170 1 2353 134 20 3 chr1 5521894 5522252 -276671412 - THE1B LTR MaLR 0 364 1 1970 177 65 58 chr1 5522444 5522908 -276670756 + MLT1C LTR MaLR 1 467 0 812 275 31 64 chr1 5522912 5523239 -276670425 + MLT1I LTR MaLR 1 316 -93 3379 56 0 77 chr1 5523250 5523290 -276670374 - MLT2A1 LTR ERVL 0 444 403 183 80 0 0 chr1 5523290 5523315 -276670349 + (TA)n Simple_repeat Simple_repeat 1 25 0 3379 56 0 77 chr1 5523315 5523348 -276670316 - MLT2A1 LTR ERVL -41 403 369 252 0 0 0 chr1 5523348 5523376 -276670288 + (TC)n Simple_repeat Simple_repeat 2 29 0 3379 56 0 77 chr1 5523376 5523782 -276669882 - MLT2A1 LTR ERVL -75 369 1 2078 58 11 0 chr1 5523782 5524060 -276669604 - HERVL-A1 LTR ERVL 0 5654 5374 1199 236 45 62 chr1 5525347 5525866 -276667798 + MLT1E3 LTR MaLR 3 601 -23 1404 163 83 18 chr1 5525891 5526167 -276667497 - AluJb SINE Alu -18 294 1 2112 146 42 22 chr1 5527149 5527506 -276666158 - THE1B LTR MaLR 0 364 1 10110 109 82 9 chr1 5527506 5528979 -276664685 - THE1B-int LTR MaLR 0 1580 1 2174 132 36 33 chr1 5528979 5529342 -276664322 - THE1B LTR MaLR 0 364 1 2655 207 100 12 chr1 5529405 5530005 -276663659 + MLT1E1 LTR MaLR 2 654 0 2338 192 65 73 chr1 5530088 5530734 -276662930 - LTR48B LTR ERV1 0 644 4 7834 194 39 42 chr1 5530833 5533253 -276660411 - LTR48B-int LTR ERV1 -159 6172 3712 522 239 0 35 chr1 5533523 5533723 -276659941 - LTR48B-int LTR ERV1 -2378 2493 1745 499 191 9 0 chr1 5533910 5534015 -276659649 - LTR48B-int LTR ERV1 -2878 3453 3348 1983 168 52 5 chr1 5534092 5534461 -276659203 - LTR48B-int LTR ERV1 -2991 3340 2955 5013 201 113 118 chr1 5534494 5534756 -276658908 - LTR48B-int LTR ERV1 -4228 2103 1841 1552 82 5 0 chr1 5534756 5534962 -276658702 - L1PA7 LINE L1 -8 6146 5940 5013 201 113 118 chr1 5534962 5535614 -276658050 - LTR48B-int LTR ERV1 -4490 1841 1187 234 235 59 59 chr1 5535614 5535682 -276657982 - tRNA-Glu-GAG tRNA tRNA -1 74 7 5013 201 113 118 chr1 5535682 5536810 -276656854 - LTR48B-int LTR ERV1 -5144 1187 3 2576 176 37 82 chr1 5536815 5537487 -276656177 - LTR48B LTR ERV1 -1 643 2 302 153 17 0 chr1 5537547 5537606 -276656058 + (TCCA)n Simple_repeat Simple_repeat 3 62 0 376 136 17 0 chr1 5537609 5537668 -276655996 - MLT1E1 LTR MaLR -422 232 173 242 186 114 0 chr1 5537770 5537840 -276655824 - MLT1E1 LTR MaLR -482 172 95 218 257 257 28 chr1 5538079 5538223 -276655441 + MIR SINE MIR 51 227 -35 482 315 67 44 chr1 5539346 5539616 -276654048 - MLT1K LTR MaLR -4 584 309 261 336 171 9 chr1 5539701 5539912 -276653752 + MIR SINE MIR 8 252 -10 189 0 0 0 chr1 5540323 5540344 -276653320 + (CATTG)n Simple_repeat Simple_repeat 5 25 0 315 298 35 18 chr1 5540684 5540798 -276652866 + MIR SINE MIR 90 205 -57 180 125 0 0 chr1 5540889 5540921 -276652743 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 256 330 21 0 chr1 5541376 5541473 -276652191 + MIR SINE MIR 78 176 -86 206 183 0 17 chr1 5541550 5541588 -276652076 + CT-rich Low_complexity Low_complexity 2 40 -20 2419 112 94 5 chr1 5541588 5541981 -276651683 + MSTA LTR MaLR 1 428 0 206 183 0 17 chr1 5541981 5542002 -276651662 + CT-rich Low_complexity Low_complexity 40 60 0 317 157 0 0 chr1 5543286 5543337 -276650327 - MLT2F LTR ERVL 0 663 613 264 245 0 31 chr1 5543341 5543439 -276650225 + (TATATG)n Simple_repeat Simple_repeat 1 95 0 244 163 12 105 chr1 5543439 5543459 -276650205 - MADE1 DNA Mariner 0 80 60 216 0 0 0 chr1 5543459 5543483 -276650181 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 244 163 12 105 chr1 5543483 5543506 -276650158 - MADE1 DNA Mariner -20 60 36 2279 107 3 0 chr1 5543506 5543806 -276649858 + AluSp SINE Alu 1 301 -12 244 163 12 105 chr1 5543806 5543847 -276649817 - MADE1 DNA Mariner -44 36 3 410 285 6 6 chr1 5543849 5544028 -276649636 + (TA)n Simple_repeat Simple_repeat 2 180 0 1702 194 94 11 chr1 5544032 5544393 -276649271 + MSTD LTR MaLR 3 393 -3 279 315 0 0 chr1 5544489 5544632 -276649032 + (TA)n Simple_repeat Simple_repeat 1 143 0 1488 242 24 11 chr1 5544632 5545004 -276648660 - MLT2C1 LTR ERVL -20 377 1 2152 230 63 8 chr1 5545272 5545751 -276647913 - MER70B LTR ERVL -73 505 1 2721 96 6 3 chr1 5545788 5546151 -276647513 + THE1B LTR MaLR 1 364 0 10912 96 34 34 chr1 5546152 5547731 -276645933 + THE1B-int LTR MaLR 2 1580 0 2325 125 17 8 chr1 5547733 5548092 -276645572 + THE1B LTR MaLR 3 364 0 7309 52 0 0 chr1 5548115 5549094 -276644570 - L1PA5 LINE L1 0 6154 5175 42138 63 2 4 chr1 5549105 5552425 -276641239 - L1PA4 LINE L1 0 6155 2851 2473 78 0 3 chr1 5552425 5552734 -276640930 - AluY SINE Alu -3 308 1 42138 63 2 4 chr1 5552734 5555580 -276638084 - L1PA4 LINE L1 -3304 2851 1 182 233 291 12 chr1 5555595 5555681 -276637983 - MIR SINE MIR -113 149 40 207 309 0 0 chr1 5555790 5555869 -276637795 + MIR SINE MIR 70 147 -61 569 233 0 6 chr1 5556642 5556822 -276636842 + CT-rich Low_complexity Low_complexity 2 180 0 283 255 59 10 chr1 5558288 5558390 -276635274 - MIR SINE MIR -72 190 84 2015 176 50 31 chr1 5558478 5558899 -276634765 + MLT1C LTR MaLR 2 430 -37 438 173 27 13 chr1 5559807 5559957 -276633707 + (CA)n Simple_repeat Simple_repeat 2 153 0 192 200 0 0 chr1 5561225 5561265 -276632399 + CT-rich Low_complexity Low_complexity 1 40 0 861 227 36 18 chr1 5562601 5562826 -276630838 - MLT1A1 LTR MaLR 0 365 137 1816 175 71 76 chr1 5562829 5563209 -276630455 - MSTB1 LTR MaLR 0 432 53 7236 58 0 2 chr1 5563209 5564439 -276629225 - L1PA6 LINE L1 0 6154 4923 1816 175 71 76 chr1 5564439 5564492 -276629172 - MSTB1 LTR MaLR -379 53 1 832 131 15 7 chr1 5564492 5564628 -276629036 - MLT1A1 LTR MaLR -225 140 4 2406 113 34 6 chr1 5565800 5566153 -276627511 + THE1B LTR MaLR 1 363 -1 2464 129 60 27 chr1 5566743 5567255 -276626409 + MLT2A2 LTR ERVL 3 554 0 494 322 40 5 chr1 5568692 5568901 -276624763 + MIR SINE MIR 13 226 -36 21 36 0 0 chr1 5568949 5568977 -276624687 + AT_rich Low_complexity Low_complexity 1 28 0 205 388 13 40 chr1 5570781 5570933 -276622731 - MIR SINE MIR -81 181 34 1874 243 67 47 chr1 5571135 5572255 -276621409 + HAL1 LINE L1 25 1200 -1307 925 195 25 66 chr1 5572331 5572572 -276621092 - MIR SINE MIR -29 233 3 1683 244 69 103 chr1 5572598 5573632 -276620032 + HAL1 LINE L1 1280 2275 -232 2139 125 14 0 chr1 5573632 5573929 -276619735 + AluSg SINE Alu 1 301 -9 1683 244 69 103 chr1 5573929 5574001 -276619663 + HAL1 LINE L1 2275 2348 -159 417 92 0 0 chr1 5574477 5574542 -276619122 + L1PA8 LINE L1 6108 6172 0 331 175 12 12 chr1 5574558 5574638 -276619026 + HAL1 LINE L1 2316 2395 -112 5647 105 8 5 chr1 5574705 5575503 -276618161 - L1PA13 LINE L1 -2 6161 5362 1312 184 23 13 chr1 5575503 5575812 -276617852 + L1P LINE L1 3064 3375 -2771 240 246 18 0 chr1 5575804 5575861 -276617803 + HAL1 LINE L1 2440 2497 -10 * 233 282 163 19 chr1 5575893 5576102 -276617562 + L1ME4a LINE L1 5815 6053 -68 1989 161 33 41 chr1 5576606 5576973 -276616691 - THE1B LTR MaLR 0 364 1 678 299 30 5 chr1 5577251 5577452 -276616212 - MER63A DNA MER1_type -4 206 1 204 264 42 14 chr1 5578266 5578338 -276615326 - L2 LINE L2 -5 3308 3235 1782 197 8 31 chr1 5579297 5579653 -276614011 - MSTD LTR MaLR -48 348 1 1782 246 59 17 chr1 5579662 5580239 -276613425 + L1ME2 LINE L1 5318 5918 -246 384 292 92 20 chr1 5580363 5580420 -276613244 + MLT1H LTR MaLR 23 74 -335 557 113 0 0 chr1 5580420 5580500 -276613164 - MADE1 DNA Mariner 0 80 1 384 292 92 20 chr1 5580500 5580697 -276612967 + MLT1H LTR MaLR 74 269 -140 307 308 77 8 chr1 5580734 5580864 -276612800 + MLT1H LTR MaLR 411 549 0 2142 118 16 3 chr1 5581399 5581705 -276611959 + AluY SINE Alu 2 311 0 1926 181 20 45 chr1 5581834 5582286 -276611378 + L1MB3 LINE L1 5740 6179 -4 2216 110 10 0 chr1 5582318 5582610 -276611054 + AluSx SINE Alu 1 295 -17 198 0 0 0 chr1 5583670 5583692 -276609972 + (CA)n Simple_repeat Simple_repeat 2 23 0 1839 182 20 47 chr1 5584255 5584444 -276609220 + MLT1B LTR MaLR 1 194 -196 2199 121 0 0 chr1 5584444 5584741 -276608923 + AluSg1 SINE Alu 1 297 -12 1839 182 20 47 chr1 5584741 5584952 -276608712 + MLT1B LTR MaLR 194 390 0 1931 146 58 28 chr1 5585950 5586314 -276607350 + THE1C LTR MaLR 1 375 0 1585 200 104 0 chr1 5587602 5587947 -276605717 - MLT1B LTR MaLR 0 390 10 365 303 35 21 chr1 5588079 5588224 -276605440 + L2 LINE L2 3126 3272 0 2182 142 27 33 chr1 5589216 5589582 -276604082 - THE1B LTR MaLR 0 364 1 11995 95 6 1 chr1 5589582 5591154 -276602510 - THE1B-int LTR MaLR 0 1580 1 2150 144 31 11 chr1 5591154 5591509 -276602155 - THE1B LTR MaLR 0 364 3 333 282 162 7 chr1 5591514 5591656 -276602008 + MIR SINE MIR 85 248 -14 318 320 107 78 chr1 5592036 5592386 -276601278 - L1MEc LINE L1 -4207 2103 1765 1250 58 0 0 chr1 5592386 5592540 -276601124 - L1PA8 LINE L1 -6 6166 6013 318 320 107 78 chr1 5592540 5592919 -276600745 - L1MEc LINE L1 -4545 1765 1353 238 308 47 18 chr1 5593007 5593176 -276600488 - L1MEc LINE L1 -4863 1256 1083 26 0 0 0 chr1 5593367 5593393 -276600271 + AT_rich Low_complexity Low_complexity 1 26 0 211 105 0 88 chr1 5593744 5593801 -276599863 + (CAAAAA)n Simple_repeat Simple_repeat 3 54 0 2482 125 22 5 chr1 5594234 5594603 -276599061 - THE1C LTR MaLR 0 375 1 25 0 0 0 chr1 5594994 5595019 -276598645 + AT_rich Low_complexity Low_complexity 1 25 0 2373 108 3 0 chr1 5595047 5595354 -276598310 + AluSc SINE Alu 1 308 -1 1911 191 3 6 chr1 5595379 5595735 -276597929 - MLT1A1 LTR MaLR -7 358 4 453 261 48 107 chr1 5597317 5597496 -276596168 - MIR SINE MIR -3 259 100 2321 116 0 0 chr1 5597496 5597799 -276595865 + AluSg SINE Alu 1 303 -7 453 261 48 107 chr1 5597799 5597891 -276595773 - MIR SINE MIR -162 100 4 1259 259 144 39 chr1 5598446 5599111 -276594553 - MER21B LTR ERV1 -125 738 4 1120 203 57 83 chr1 5600008 5600358 -276593306 - MLT1A2 LTR MaLR -33 341 1 2110 129 3 3 chr1 5600639 5600941 -276592723 - AluSx SINE Alu -10 302 1 1922 202 57 9 chr1 5602043 5602483 -276591181 - MLT1C LTR MaLR -6 461 1 339 316 115 21 chr1 5603228 5603646 -276590018 + L1ME4a LINE L1 5462 5918 -203 283 249 32 56 chr1 5603654 5603886 -276589778 + HAL1b LINE L1 1190 1307 -41 681 199 0 0 chr1 5604264 5604440 -276589224 + (TG)n Simple_repeat Simple_repeat 1 176 0 21 0 0 0 chr1 5604570 5604591 -276589073 + AT_rich Low_complexity Low_complexity 1 21 0 238 216 0 20 chr1 5605066 5605117 -276588547 + (TG)n Simple_repeat Simple_repeat 1 50 0 1372 244 59 47 chr1 5606102 5606372 -276587292 + MLT1D LTR MaLR 2 267 -238 2418 132 6 19 chr1 5606372 5606737 -276586927 - THE1B LTR MaLR -4 360 1 11620 100 20 4 chr1 5606737 5608292 -276585372 - THE1B-int LTR MaLR 0 1580 1 2377 137 8 14 chr1 5608292 5608658 -276585006 - THE1B LTR MaLR 0 364 1 1372 244 59 47 chr1 5608658 5608880 -276584784 + MLT1D LTR MaLR 266 502 -3 202 143 0 24 chr1 5610067 5610109 -276583555 + (TTAA)n Simple_repeat Simple_repeat 4 44 0 1647 302 3 2 chr1 5610455 5611044 -276582620 + HERVK13 LTR ERVK 1460 2049 -6067 2350 138 24 8 chr1 5611110 5611479 -276582185 - THE1C LTR MaLR 0 375 1 2778 209 22 30 chr1 5612556 5612729 -276580935 + MER77 LTR ERV1 1 174 -489 1677 206 159 43 chr1 5612729 5613195 -276580469 - MLT2B1 LTR ERVL 0 520 1 2778 209 22 30 chr1 5613195 5613552 -276580112 + MER77 LTR ERV1 174 577 -86 2340 100 21 0 chr1 5613552 5613881 -276579783 - L1PA13 LINE L1 -15 6148 5813 2778 209 22 30 chr1 5613881 5613962 -276579702 + MER77 LTR ERV1 577 657 -6 186 263 76 82 chr1 5614159 5614330 -276579334 + L2 LINE L2 2867 3036 -236 323 300 22 0 chr1 5614747 5614837 -276578827 - MER117 DNA MER1_type 0 197 106 1946 184 26 0 chr1 5615189 5615569 -276578095 + MLT1B LTR MaLR 1 390 0 1666 169 76 10 chr1 5617786 5618150 -276575514 - MLT1B LTR MaLR -1 466 1 2364 88 3 0 chr1 5618654 5618949 -276574715 - AluSq SINE Alu -12 301 6 25 0 0 0 chr1 5618957 5618982 -276574682 + AT_rich Low_complexity Low_complexity 1 25 0 2544 196 9 30 chr1 5618983 5619509 -276574155 - MLT2B2 LTR ERVL 0 515 1 200 292 0 56 chr1 5620011 5620083 -276573581 + L2 LINE L2 3219 3286 -27 279 0 0 0 chr1 5620417 5620448 -276573216 + (TA)n Simple_repeat Simple_repeat 2 32 0 2303 228 61 32 chr1 5621929 5621995 -276571669 - L1MB7 LINE L1 0 6183 6120 1999 100 3 57 chr1 5621995 5622320 -276571344 + AluSx SINE Alu 1 309 0 2263 90 0 7 chr1 5622320 5622609 -276571055 + AluSg SINE Alu 23 309 -1 2303 228 61 32 chr1 5622609 5623279 -276570385 - L1MB7 LINE L1 -62 6121 5444 210 310 40 20 chr1 5623949 5624049 -276569615 - MIR SINE MIR -71 191 90 207 331 40 47 chr1 5625320 5625468 -276568196 + MIR SINE MIR 77 223 -39 237 65 0 0 chr1 5626008 5626039 -276567625 + (GGGA)n Simple_repeat Simple_repeat 3 33 0 696 82 0 45 chr1 5626317 5626427 -276567237 - AluSp/q SINE Alu -5 308 204 251 212 0 15 chr1 5626804 5626870 -276566794 + CT-rich Low_complexity Low_complexity 4 68 0 339 269 65 11 chr1 5626910 5627003 -276566661 - MIR SINE MIR -151 111 14 286 316 77 31 chr1 5628149 5628345 -276565319 - L2 LINE L2 -261 3011 2807 222 338 0 15 chr1 5629634 5629702 -276563962 - MIR SINE MIR -171 91 25 275 350 78 5 chr1 5630220 5630426 -276563238 - MIR SINE MIR -12 250 30 2116 117 158 61 chr1 5631087 5631530 -276562134 - LTR19A LTR ERV1 0 486 1 592 25 37 0 chr1 5632060 5632141 -276561523 + (TAGA)n Simple_repeat Simple_repeat 2 85 0 1694 183 0 16 chr1 5632560 5632877 -276560787 - AluJo SINE Alu 0 312 1 2144 116 0 0 chr1 5633434 5633735 -276559929 - AluSx SINE Alu -11 301 1 334 250 103 17 chr1 5634757 5634873 -276558791 - MIR SINE MIR -115 147 22 1359 213 7 0 chr1 5634887 5635160 -276558504 + L1MB5 LINE L1 5637 5911 -263 2248 98 52 33 chr1 5635160 5635528 -276558136 + THE1C LTR MaLR 1 375 0 2358 135 16 21 chr1 5635616 5635993 -276557671 - THE1C LTR MaLR 0 375 1 382 282 13 39 chr1 5636028 5636184 -276557480 - L2 LINE L2 -1 3312 3161 1282 235 121 71 chr1 5636946 5637427 -276556237 + MLT1D LTR MaLR 1 505 0 2039 106 13 17 chr1 5638018 5638319 -276555345 + AluSx SINE Alu 1 300 -12 5738 62 1 0 chr1 5639530 5640240 -276553424 - L1PA3 LINE L1 -1 6154 5444 297 282 109 0 chr1 5642065 5642175 -276551489 + L2 LINE L2 3188 3309 -4 214 310 0 0 chr1 5642547 5642605 -276551059 - L2 LINE L2 -17 3296 3239 30 0 0 0 chr1 5642787 5642817 -276550847 + AT_rich Low_complexity Low_complexity 1 30 0 223 200 0 0 chr1 5644896 5644936 -276548728 + MIR SINE MIR 111 150 -112 2524 52 3 0 chr1 5645030 5645337 -276548327 - AluSx SINE Alu -4 308 1 2139 108 0 16 chr1 5646008 5646324 -276547340 + AluSx SINE Alu 1 311 -1 1433 75 5 0 chr1 5646384 5646571 -276547093 + AluSg SINE Alu 1 188 -122 212 337 153 3 chr1 5646873 5647214 -276546450 + L2 LINE L2 2583 2974 -340 1683 165 3 29 chr1 5647744 5648059 -276545605 - AluJo SINE Alu -5 307 1 217 200 0 33 chr1 5649019 5649079 -276544585 + T-rich Low_complexity Low_complexity 2 59 0 1856 202 16 0 chr1 5649330 5649697 -276543967 + L1MB2 LINE L1 5645 6017 -154 209 344 62 0 chr1 5752720 5752816 -276440848 - L2 LINE L2 -17 3255 3154 498 224 29 52 chr1 5754060 5754234 -276439430 - MER53 DNA DNA -19 170 1 180 125 0 0 chr1 5755321 5755353 -276438311 + (CA)n Simple_repeat Simple_repeat 1 32 0 312 210 17 28 chr1 5755391 5755572 -276438092 + (CA)n Simple_repeat Simple_repeat 2 180 0 207 204 0 0 chr1 5755594 5755638 -276438026 + (CA)n Simple_repeat Simple_repeat 2 45 0 229 317 0 0 chr1 5755677 5755737 -276437927 + (CA)n Simple_repeat Simple_repeat 1 60 0 194 283 0 10 chr1 5755752 5755851 -276437813 + (CA)n Simple_repeat Simple_repeat 1 98 0 455 222 0 6 chr1 5755929 5756109 -276437555 + (CA)n Simple_repeat Simple_repeat 1 179 0 342 215 0 0 chr1 5756128 5756258 -276437406 + (CA)n Simple_repeat Simple_repeat 1 130 0 182 281 53 0 chr1 5756963 5757020 -276436644 - MIR SINE MIR -159 103 44 2111 134 0 0 chr1 5759577 5759882 -276433782 - AluSx SINE Alu -7 305 1 558 242 5 0 chr1 5760867 5761307 -276432357 + (TG)n Simple_repeat Simple_repeat 1 442 0 633 226 0 0 chr1 5761319 5761788 -276431876 + (TG)n Simple_repeat Simple_repeat 1 469 0 2347 65 3 3 chr1 5763743 5764037 -276429627 - AluSx SINE Alu -18 294 1 250 273 227 18 chr1 5764804 5764914 -276428750 + L2 LINE L2 3140 3272 0 277 195 12 12 chr1 5765420 5765502 -276428162 + (TG)n Simple_repeat Simple_repeat 2 83 0 254 257 40 0 chr1 5765506 5765580 -276428084 + (TATATG)n Simple_repeat Simple_repeat 1 77 0 327 305 17 33 chr1 5765604 5765786 -276427878 + L1MC4 LINE L1 1995 6983 -1339 210 279 49 0 chr1 5765795 5765856 -276427808 + (CATG)n Simple_repeat Simple_repeat 3 66 0 319 157 29 0 chr1 5765858 5765928 -276427736 + (TG)n Simple_repeat Simple_repeat 1 72 0 190 200 0 109 chr1 5766714 5766769 -276426895 - L2 LINE L2 -23 3249 3201 858 212 0 5 chr1 5766887 5767071 -276426593 + MER96B DNA MER1_type? 49 231 -186 614 251 64 48 chr1 5767316 5767503 -276426161 - MIR SINE MIR -15 247 58 766 255 15 25 chr1 5768014 5768218 -276425446 - MER63A DNA MER1_type -8 202 1 452 320 33 7 chr1 5768565 5768718 -276424946 + MIR3 SINE MIR 18 174 -34 2361 81 0 0 chr1 5769604 5769899 -276423765 - AluY SINE Alu -16 295 1 319 265 10 20 chr1 5769954 5770052 -276423612 - MIR SINE MIR -66 142 46 261 277 219 0 chr1 5771082 5771237 -276422427 + L2 LINE L2 2297 2485 -829 414 341 6 43 chr1 5772093 5772257 -276421407 - L2 LINE L2 -7 3306 3149 1066 223 12 56 chr1 5772261 5772602 -276421062 + L1ME2 LINE L1 5839 6164 0 312 315 70 5 chr1 5772643 5772843 -276420821 + L1MC4 LINE L1 7829 8041 -1 1296 304 171 7 chr1 5772850 5773971 -276419693 - L2 LINE L2 -203 3110 1794 183 42 0 0 chr1 5773971 5773995 -276419669 + (TC)n Simple_repeat Simple_repeat 1 24 0 684 223 0 0 chr1 5773995 5774305 -276419359 + (CA)n Simple_repeat Simple_repeat 1 310 0 1777 172 53 42 chr1 5775120 5775481 -276418183 - MLT1A1 LTR MaLR 0 365 1 2163 81 3 3 chr1 5775496 5775804 -276417860 + AluSx SINE Alu 1 308 0 388 263 51 0 chr1 5776035 5776153 -276417511 - MER117 DNA MER1_type -5 192 69 339 291 29 0 chr1 5776187 5776290 -276417374 - MIR SINE MIR -67 141 36 444 293 57 0 chr1 5776623 5776763 -276416901 - MIR SINE MIR -6 256 109 769 244 96 46 chr1 5777704 5777747 -276415917 + MLT1C LTR MaLR 83 122 -471 1999 113 0 20 chr1 5777747 5778048 -276415616 + AluSx SINE Alu 18 312 0 769 244 96 46 chr1 5778048 5778360 -276415304 + MLT1C LTR MaLR 122 587 -6 194 304 18 0 chr1 5778461 5778517 -276415147 + MIR SINE MIR 117 173 -89 661 153 8 15 chr1 5779010 5779141 -276414523 + MLT1A1 LTR MaLR 1 130 -235 3317 130 2 2 chr1 5779141 5780094 -276413570 + L1P4 LINE L1 4831 5783 -382 7574 31 1 1 chr1 5780196 5781289 -276412375 + L1PA4 LINE L1 5058 6152 -3 798 79 0 40 chr1 5781289 5781410 -276412254 + L1PA8 LINE L1 6052 6172 0 1169 175 79 21 chr1 5781411 5781702 -276411962 + MLT2D LTR ERVL 107 414 0 571 309 73 16 chr1 5781867 5782058 -276411606 - MIR SINE MIR -13 249 48 429 264 16 24 chr1 5783520 5783645 -276410019 + MIR SINE MIR 104 227 -35 853 330 142 19 chr1 5784130 5784918 -276408746 + L2 LINE L2 2054 2938 -376 799 133 24 12 chr1 5784965 5785131 -276408533 + CT-rich Low_complexity Low_complexity 4 171 0 1214 151 11 0 chr1 5785162 5785347 -276408317 - AluSg/x SINE Alu -7 305 119 636 170 38 31 chr1 5785448 5785769 -276407895 + (ATGGTG)n Simple_repeat Simple_repeat 1 323 0 * 720 175 0 22 chr1 5785760 5785943 -276407721 + (ATG)n Simple_repeat Simple_repeat 1 179 0 744 296 21 0 chr1 5785962 5786202 -276407462 - MIR SINE MIR -2 260 16 237 309 112 59 chr1 5786264 5786416 -276407248 + MER5B DNA MER1_type 17 176 -2 199 354 50 0 chr1 5787748 5787847 -276405817 - MIR SINE MIR -68 140 37 1502 219 114 6 chr1 5787907 5788071 -276405593 + MLT1B LTR MaLR 1 146 -244 222 37 0 0 chr1 5788071 5788098 -276405566 + (TC)n Simple_repeat Simple_repeat 2 28 0 1502 219 114 6 chr1 5788098 5788285 -276405379 + MLT1B LTR MaLR 146 390 0 317 315 11 28 chr1 5789035 5789213 -276404451 + CT-rich Low_complexity Low_complexity 3 177 0 349 292 0 0 chr1 5789362 5789458 -276404206 + (CA)n Simple_repeat Simple_repeat 1 96 0 270 316 72 20 chr1 5790045 5790197 -276403467 + L2 LINE L2 3079 3238 -75 200 327 0 0 chr1 5790249 5790301 -276403363 + MIR SINE MIR 81 132 -76 235 88 0 0 chr1 5793535 5793569 -276400095 - MIR SINE MIR -63 145 112 340 303 40 0 chr1 5796253 5796352 -276397312 + L2 LINE L2 3168 3270 -2 286 317 10 19 chr1 5796518 5796622 -276397042 - MIR3 SINE MIR 0 208 106 2068 103 7 3 chr1 5796693 5796993 -276396671 - AluSx SINE Alu -11 301 1 287 265 0 15 chr1 5797022 5797090 -276396574 + MIR SINE MIR 119 185 -77 2193 196 44 4 chr1 5797604 5798124 -276395540 + MER74A LTR ERVL 16 556 -2 478 250 96 6 chr1 5799435 5799591 -276394073 + MER117 DNA MER1_type 1 170 -27 205 273 36 0 chr1 5799648 5799703 -276393961 + L2 LINE L2 3243 3299 -14 1080 124 0 0 chr1 5800711 5800889 -276392775 + (TTCA)n Simple_repeat Simple_repeat 3 180 0 203 138 0 0 chr1 5800890 5800919 -276392745 + (CTCA)n Simple_repeat Simple_repeat 1 29 0 192 271 29 57 chr1 5801831 5801901 -276391763 + MIR SINE MIR 86 153 -55 496 278 139 0 chr1 5801905 5802078 -276391586 + MIR SINE MIR 31 227 -35 243 239 0 0 chr1 5802646 5802713 -276390951 + (CA)n Simple_repeat Simple_repeat 1 67 0 195 294 15 15 chr1 5804126 5804194 -276389470 + L2 LINE L2 3241 3308 -5 * 323 296 117 39 chr1 5804186 5804416 -276389248 + L2 LINE L2 3066 3313 0 448 220 8 42 chr1 5805988 5806106 -276387558 - MER117 DNA MER1_type -18 179 66 1192 103 16 0 chr1 5806243 5806428 -276387236 + MER30 DNA MER1_type 43 230 0 981 147 76 5 chr1 5806429 5806627 -276387037 + MER2 DNA MER2_type 133 344 -1 378 0 0 0 chr1 5806628 5806670 -276386994 + (TG)n Simple_repeat Simple_repeat 1 42 0 1494 161 140 9 chr1 5806671 5807020 -276386644 + L1MC4 LINE L1 6690 7084 -958 686 217 29 11 chr1 5807023 5807198 -276386466 + L1MC4 LINE L1 7238 7415 -627 * 5068 110 7 21 chr1 5807194 5807763 -276385901 + L1PA10 LINE L1 5334 5889 -279 2455 74 0 3 chr1 5807763 5808075 -276385589 + AluY SINE Alu 1 311 0 5068 110 7 21 chr1 5808075 5808351 -276385313 + L1PA10 LINE L1 5889 6167 -1 1064 234 162 13 chr1 5808386 5808780 -276384884 + L1MC4 LINE L1 7447 7899 -143 1896 177 41 66 chr1 5808966 5809406 -276384258 + MSTB1 LTR MaLR 1 429 -3 2672 93 8 3 chr1 5809605 5809958 -276383706 + THE1A LTR MaLR 1 355 0 681 236 127 0 chr1 5809963 5810120 -276383544 - MER45A DNA AcHobo 0 178 2 3825 91 0 8 chr1 5810153 5810671 -276382993 - MER75 DNA T2_type 0 514 1 943 241 57 75 chr1 5810671 5810854 -276382810 + L1ME4a LINE L1 5638 5823 -298 2162 77 0 11 chr1 5810854 5811140 -276382524 + AluY SINE Alu 1 283 -28 378 0 0 0 chr1 5811140 5811182 -276382482 + (CA)n Simple_repeat Simple_repeat 2 43 0 1630 96 0 237 chr1 5811191 5811587 -276382077 + AluSx SINE Alu 1 302 0 943 241 57 75 chr1 5811587 5811738 -276381926 + L1ME4a LINE L1 5830 5974 -147 207 0 0 0 chr1 5811738 5811761 -276381903 + (CAA)n Simple_repeat Simple_repeat 2 24 0 943 241 57 75 chr1 5811761 5811904 -276381760 + L1ME4a LINE L1 5974 6118 -3 21 0 0 0 chr1 5811951 5811972 -276381692 + AT_rich Low_complexity Low_complexity 1 21 0 292 286 26 78 chr1 5812000 5812154 -276381510 - L2 LINE L2 -3 3310 3165 235 239 15 30 chr1 5812831 5812898 -276380766 + GA-rich Low_complexity Low_complexity 2 67 0 204 40 0 0 chr1 5813757 5813782 -276379882 + (TCCA)n Simple_repeat Simple_repeat 4 28 0 554 311 75 43 chr1 5813792 5814114 -276379550 - L2 LINE L2 0 3272 2941 254 219 96 14 chr1 5814432 5814505 -276379159 + MER91C DNA MER1_type 32 110 -30 870 256 85 50 chr1 5814516 5814918 -276378746 - Charlie8 DNA MER1_type -1946 471 56 338 251 31 115 chr1 5815303 5815342 -276378322 - MER69A DNA AcHobo -2351 175 134 1547 160 7 28 chr1 5815342 5815629 -276378035 - AluJo SINE Alu -8 304 24 338 251 31 115 chr1 5815629 5815719 -276377945 - MER69A DNA AcHobo -2392 134 64 982 257 30 5 chr1 5815719 5815921 -276377743 - MER63A DNA MER1_type -3 207 1 338 251 31 115 chr1 5815921 5815981 -276377683 - MER69A DNA AcHobo -2462 64 1 315 146 0 0 chr1 5819015 5819070 -276374594 + (TCCCC)n Simple_repeat Simple_repeat 4 58 0 2290 102 0 13 chr1 5820068 5820382 -276373282 - AluSx SINE Alu -2 310 1 1403 184 26 22 chr1 5821442 5821714 -276371950 + AluJo SINE Alu 39 311 -1 370 260 24 32 chr1 5822572 5822695 -276370969 - MIR SINE MIR -34 228 107 249 83 0 0 chr1 5822796 5822832 -276370832 + (TCCC)n Simple_repeat Simple_repeat 1 36 0 187 287 49 91 chr1 5822841 5822887 -276370777 - L2 LINE L2 -1 3312 3266 2336 90 3 7 chr1 5822887 5823197 -276370467 + AluSq SINE Alu 1 309 -4 187 287 49 91 chr1 5823197 5823293 -276370371 - L2 LINE L2 -47 3266 3176 308 287 74 9 chr1 5823352 5823460 -276370204 + MIR SINE MIR 24 138 -124 429 327 140 5 chr1 5824154 5824368 -276369296 - MIR SINE MIR -4 258 16 554 310 59 5 chr1 5824381 5824568 -276369096 + MIR SINE MIR 3 199 -63 467 59 0 15 chr1 5825148 5825216 -276368448 + (TTCA)n Simple_repeat Simple_repeat 2 68 0 252 333 0 0 chr1 5825577 5825706 -276367958 + L1ME4a LINE L1 5988 6116 -5 260 303 220 8 chr1 5826710 5826842 -276366822 + MIR SINE MIR 49 208 -54 621 170 79 6 chr1 5827883 5828048 -276365616 - MER96B DNA MER1_type? -240 177 1 207 167 0 0 chr1 5829011 5829053 -276364611 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 3961 224 39 50 chr1 5829328 5829770 -276363894 + L1MD1 LINE L1 3956 4401 -1841 1869 134 3 26 chr1 5829770 5830075 -276363589 - AluSg SINE Alu -12 298 1 3961 224 39 50 chr1 5830075 5830087 -276363577 + L1MD1 LINE L1 4401 4412 -1830 2301 86 0 19 chr1 5830087 5830400 -276363264 - AluY SINE Alu -4 307 1 3961 224 39 50 chr1 5830400 5830830 -276362834 + L1MD1 LINE L1 4412 4845 -1397 2174 110 7 3 chr1 5830830 5831131 -276362533 + AluSq SINE Alu 1 302 -11 3961 224 39 50 chr1 5831131 5832150 -276361514 + L1MD1 LINE L1 4845 5833 -409 2182 91 0 20 chr1 5832152 5832448 -276361216 + AluSg SINE Alu 5 294 -16 207 0 0 0 chr1 5832511 5832534 -276361130 + (CA)n Simple_repeat Simple_repeat 2 24 0 1007 189 41 5 chr1 5832534 5832730 -276360934 + L1MD2 LINE L1 6154 6356 -3 255 311 205 6 chr1 5836465 5836626 -276357038 - MIR SINE MIR 0 262 70 414 321 103 19 chr1 5836644 5836906 -276356758 + L1ME4a LINE L1 5614 5897 -224 263 335 44 0 chr1 5836919 5837077 -276356587 + L1ME4a LINE L1 5955 6119 -2 237 268 0 56 chr1 5837366 5837437 -276356227 - MIR3 SINE MIR -4 204 138 340 255 97 0 chr1 5838519 5838631 -276355033 - MIR SINE MIR -75 133 8 1830 195 120 24 chr1 5839876 5840024 -276353640 + MLT1C LTR MaLR 1 133 -334 372 77 0 0 chr1 5840024 5840076 -276353588 + (TG)n Simple_repeat Simple_repeat 2 53 0 2147 101 3 0 chr1 5840076 5840362 -276353302 - AluSp SINE Alu -26 287 1 1830 195 120 24 chr1 5840362 5840637 -276353027 + MLT1C LTR MaLR 132 466 -1 636 313 119 13 chr1 5840722 5841099 -276352565 + L2 LINE L2 2455 2871 -443 339 283 70 89 chr1 5841596 5841854 -276351810 + L2 LINE L2 3046 3298 -15 234 62 0 0 chr1 5841855 5841887 -276351777 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 226 336 179 9 chr1 5842561 5842784 -276350880 - MIR SINE MIR 0 262 2 307 282 18 45 chr1 5843649 5843759 -276349905 + MER5B DNA MER1_type 36 142 -36 229 248 9 9 chr1 5845250 5845359 -276348305 + CT-rich Low_complexity Low_complexity 2 110 0 406 247 11 0 chr1 5845359 5845452 -276348212 - L2 LINE L2 0 3272 3179 320 368 21 7 chr1 5845832 5845976 -276347688 + MIR SINE MIR 103 248 -14 200 158 18 0 chr1 5846804 5846861 -276346803 + (TG)n Simple_repeat Simple_repeat 1 58 0 306 359 78 51 chr1 5847943 5848199 -276345465 - L1M4 LINE L1 -2799 3347 3085 5983 33 1 2 chr1 5848314 5849108 -276344556 - L1P LINE L1 -1747 4399 3607 7309 56 12 7 chr1 5849108 5850560 -276343104 - SVA Other Other -839 1386 44 229 296 70 0 chr1 5851030 5851101 -276342563 - MIR SINE MIR -127 135 60 466 354 143 0 chr1 5851320 5851543 -276342121 - MIR SINE MIR -3 259 5 186 103 0 0 chr1 5851849 5851878 -276341786 + (TGAA)n Simple_repeat Simple_repeat 4 32 0 339 328 173 9 chr1 5852857 5853186 -276340478 - L2 LINE L2 -1138 2176 1794 656 228 0 12 chr1 5853207 5853723 -276339941 + (CA)n Simple_repeat Simple_repeat 1 509 0 204 125 0 0 chr1 5853952 5853984 -276339680 + (AGCTG)n Simple_repeat Simple_repeat 3 34 0 182 328 17 17 chr1 5857164 5857280 -276336384 + L2 LINE L2 2991 3106 -166 193 225 0 0 chr1 5857729 5857769 -276335895 + L2 LINE L2 3151 3190 -82 204 282 70 92 chr1 5857772 5857914 -276335750 + MIR SINE MIR 50 188 -74 446 325 27 37 chr1 5859126 5859314 -276334350 - MIR SINE MIR -6 256 71 373 286 0 0 chr1 5859320 5859404 -276334260 - MIR SINE MIR -108 154 71 379 286 0 0 chr1 5859410 5859494 -276334170 - MIR SINE MIR -108 154 71 273 317 10 40 chr1 5860977 5861078 -276332586 + MIR SINE MIR 62 159 -103 288 312 52 13 chr1 5861955 5862109 -276331555 + MIR3 SINE MIR 30 189 -19 185 111 44 0 chr1 5862420 5862465 -276331199 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 219 69 0 0 chr1 5865828 5865857 -276327807 + (GGAA)n Simple_repeat Simple_repeat 1 29 0 237 197 211 0 chr1 5866388 5866459 -276327205 - MARNA DNA Mariner -224 362 277 22 0 0 0 chr1 5869625 5869647 -276324017 + AT_rich Low_complexity Low_complexity 1 22 0 6084 114 4 10 chr1 5870220 5871550 -276322114 + L1PA15 LINE L1 4842 6165 0 1138 192 37 4 chr1 5871551 5871796 -276321868 + MLT1A1 LTR MaLR 113 365 0 337 253 118 56 chr1 5871879 5872057 -276321607 - MIR SINE MIR -53 209 21 700 177 7 7 chr1 5873036 5873315 -276320349 + (ATG)n Simple_repeat Simple_repeat 1 279 0 902 139 7 39 chr1 5873249 5873593 -276320071 + (ATGGTG)n Simple_repeat Simple_repeat 1 332 0 720 169 14 41 chr1 5873613 5873979 -276319685 + (ATGGTG)n Simple_repeat Simple_repeat 1 355 0 3813 152 126 32 chr1 5875439 5876194 -276317470 + LTR1B LTR ERV1 1 826 0 637 217 30 18 chr1 5876679 5876845 -276316819 + MER96B DNA MER1_type? 16 183 -234 423 325 100 0 chr1 5876949 5877109 -276316555 - MIR SINE MIR -79 183 8 263 326 54 16 chr1 5877659 5877788 -276315876 - L2 LINE L2 -1 3271 3138 271 293 27 0 chr1 5878102 5878177 -276315487 - MIR3 SINE MIR -31 177 101 364 280 47 0 chr1 5878287 5878394 -276315270 - MIR SINE MIR -59 149 38 1768 140 0 4 chr1 5880137 5880401 -276313263 + AluSx SINE Alu 38 300 -12 229 162 0 0 chr1 5880401 5880438 -276313226 - Alu SINE Alu -96 37 1 310 287 113 40 chr1 5880505 5880655 -276313009 + L2 LINE L2 3153 3313 0 226 261 98 33 chr1 5880855 5880947 -276312717 + MIR SINE MIR 34 131 -77 364 303 83 51 chr1 5881625 5881692 -276311972 - L2 LINE L2 -249 3064 3001 2207 108 0 0 chr1 5881692 5881980 -276311684 + AluSq SINE Alu 1 318 0 196 100 0 0 chr1 5881980 5882010 -276311654 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 364 303 83 51 chr1 5882010 5882267 -276311397 - L2 LINE L2 -312 3001 2730 204 245 0 0 chr1 5882954 5883003 -276310661 + A-rich Low_complexity Low_complexity 6 54 0 525 319 113 7 chr1 5888200 5888667 -276304997 + L2 LINE L2 2647 3158 -155 1311 166 92 0 chr1 5888667 5888938 -276304726 + MER46C DNA MER2_type 1 296 -42 745 194 27 21 chr1 5888941 5889127 -276304537 - MER20 DNA MER1_type -4 215 29 233 379 42 0 chr1 5889212 5889307 -276304357 + L2 LINE L2 3151 3249 -23 1293 202 121 57 chr1 5889309 5889765 -276303899 + MER31A LTR ERV1 1 485 0 336 333 157 0 chr1 5890347 5890500 -276303164 - L3 LINE CR1 -107 1470 1294 1180 267 124 2 chr1 5890998 5891440 -276302224 + MLT1J LTR MaLR 7 502 -9 247 368 86 31 chr1 5891943 5892106 -276301558 - MIR SINE MIR -71 191 20 546 215 90 7 chr1 5892860 5893004 -276300660 - MIR SINE MIR -30 232 77 2310 112 0 0 chr1 5894012 5894324 -276299340 + AluSx SINE Alu 1 312 0 320 288 130 14 chr1 5894332 5894478 -276299186 + MIR SINE MIR 20 182 -80 738 187 42 17 chr1 5894930 5895263 -276298401 + MSTD LTR MaLR 2 396 0 991 190 78 5 chr1 5895957 5896162 -276297502 + MER58A DNA MER1_type 1 220 -4 928 149 9 0 chr1 5896665 5896901 -276296763 + (TCCA)n Simple_repeat Simple_repeat 1 238 0 180 336 168 9 chr1 5896913 5897026 -276296638 - L2 LINE L2 -16 3256 3126 319 212 176 0 chr1 5898040 5898125 -276295539 + MLT2D LTR ERVL 17 116 -298 26168 52 2 9 chr1 5898127 5901775 -276291889 + L1P LINE L1 1 3621 -2525 653 66 11 0 chr1 5901789 5901880 -276291784 + (GGAA)n Simple_repeat Simple_repeat 1 92 0 216 156 16 31 chr1 5902086 5902150 -276291514 + GA-rich Low_complexity Low_complexity 4 66 0 356 301 15 15 chr1 5902213 5902346 -276291318 + GA-rich Low_complexity Low_complexity 4 136 0 242 195 55 37 chr1 5902461 5902625 -276291039 + (TTGTG)n Simple_repeat Simple_repeat 4 170 0 28 0 0 0 chr1 5903345 5903373 -276290291 + AT_rich Low_complexity Low_complexity 1 28 0 330 355 69 31 chr1 5903675 5904044 -276289620 - L1MEd LINE L1 -1205 1302 895 495 213 62 19 chr1 5904625 5904785 -276288879 - MER58 DNA MER1_type -132 209 43 2044 114 38 0 chr1 5904788 5905078 -276288586 + AluSx SINE Alu 1 301 -11 1050 82 0 0 chr1 5905080 5905214 -276288450 + AluSp/q SINE Alu 166 299 -14 789 156 12 42 chr1 5905774 5905941 -276287723 - MER3 DNA MER1_type 0 209 48 232 303 81 0 chr1 5907036 5907135 -276286529 - L2 LINE L2 -216 3056 2950 332 327 27 9 chr1 5908079 5908189 -276285475 - MIR SINE MIR -131 131 20 288 355 50 21 chr1 5908928 5909069 -276284595 - MIR SINE MIR -80 182 38 22 0 0 0 chr1 5910049 5910071 -276283593 + AT_rich Low_complexity Low_complexity 1 22 0 273 256 0 44 chr1 5910222 5910312 -276283352 + G-rich Low_complexity Low_complexity 3 88 0 672 180 6 17 chr1 5910965 5911143 -276282521 + CT-rich Low_complexity Low_complexity 3 178 0 277 368 0 11 chr1 5912255 5912350 -276281314 + MIR SINE MIR 63 156 -106 353 329 124 9 chr1 5912715 5912925 -276280739 + MIR SINE MIR 15 248 -14 2348 231 30 0 chr1 5914358 5914916 -276278748 + L1MB5 LINE L1 5587 6161 -13 339 318 32 16 chr1 5915087 5915213 -276278451 - L2 LINE L2 -1 3271 3144 205 291 55 36 chr1 5917025 5917135 -276276529 - MIR SINE MIR -70 192 81 2130 123 7 0 chr1 5917488 5917798 -276275866 - AluSx SINE Alu 0 312 1 2131 166 17 6 chr1 5918408 5918769 -276274895 + MLT1A1 LTR MaLR 1 365 0 372 274 86 8 chr1 5919303 5919420 -276274244 + MIR SINE MIR 15 140 -122 296 241 97 14 chr1 5920099 5920244 -276273420 + MER20 DNA MER1_type 6 162 -57 214 400 12 0 chr1 5920491 5920571 -276273093 - L3 LINE CR1 -25 1552 1472 24 32 0 0 chr1 5920954 5920985 -276272679 + AT_rich Low_complexity Low_complexity 1 31 0 296 376 43 12 chr1 5921216 5921378 -276272286 - MIR3 SINE MIR -15 193 27 386 340 62 14 chr1 5922294 5922438 -276271226 + L2 LINE L2 3118 3268 -4 376 316 39 32 chr1 5923911 5924066 -276269598 - L2 LINE L2 0 3272 3117 476 302 31 0 chr1 5924381 5924510 -276269154 + L2 LINE L2 3180 3312 -1 602 358 5 10 chr1 5924510 5924717 -276268947 - MIR SINE MIR -50 212 7 181 276 171 33 chr1 5925558 5925710 -276267954 + L2 LINE L2 2911 3083 -189 230 279 103 0 chr1 5927334 5927402 -276266262 - MIR3 SINE MIR -30 178 104 275 350 108 5 chr1 5928311 5928505 -276265159 - MIR SINE MIR -29 233 20 299 318 216 25 chr1 5929112 5929474 -276264190 + L2 LINE L2 2883 3313 0 1292 209 159 0 chr1 5929629 5930007 -276263657 + MLT1C LTR MaLR 2 439 -28 212 260 7 123 chr1 5931975 5932021 -276261643 + L2 LINE L2 3136 3186 -86 821 194 123 83 chr1 5932021 5932193 -276261471 + MLT1A1 LTR MaLR 1 165 -200 1970 151 6 35 chr1 5932193 5932510 -276261154 - AluJb SINE Alu -4 308 1 821 194 123 83 chr1 5932510 5932687 -276260977 + MLT1A1 LTR MaLR 165 364 -1 212 260 7 123 chr1 5932687 5932786 -276260878 + L2 LINE L2 3186 3264 -8 234 0 0 0 chr1 5932787 5932813 -276260851 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 1289 216 23 20 chr1 5933413 5933719 -276259945 - L1MD1 LINE L1 -136 6106 5800 472 284 77 0 chr1 5934901 5935056 -276258608 + MIR SINE MIR 32 198 -64 419 250 0 17 chr1 5936671 5936847 -276256817 + (CAT)n Simple_repeat Simple_repeat 3 175 0 201 154 0 0 chr1 5936872 5936911 -276256753 + (CACCAT)n Simple_repeat Simple_repeat 6 44 0 569 220 0 16 chr1 5936972 5937154 -276256510 + (CAT)n Simple_repeat Simple_repeat 1 179 0 2512 99 74 8 chr1 5937183 5937576 -276256088 + MSTA LTR MaLR 9 427 -1 701 156 24 12 chr1 5937615 5937782 -276255882 + (CACCAT)n Simple_repeat Simple_repeat 4 172 0 492 233 0 0 chr1 5937785 5937931 -276255733 + (CAT)n Simple_repeat Simple_repeat 2 147 0 612 300 40 18 chr1 5937934 5938161 -276255503 - MIR SINE MIR -3 259 28 204 238 16 32 chr1 5938356 5938419 -276255245 - L2 LINE L2 -3 3269 3208 389 316 8 15 chr1 5938906 5939039 -276254625 - L2 LINE L2 -3 3310 3179 183 274 0 20 chr1 5941269 5941320 -276252344 + L2 LINE L2 3205 3254 -18 2381 88 7 0 chr1 5943768 5944073 -276249591 - AluSq SINE Alu -6 307 1 256 350 68 0 chr1 5944536 5944653 -276249011 + MIR SINE MIR 28 152 -110 507 239 88 19 chr1 5945582 5945741 -276247923 - MIR SINE MIR -29 233 64 2354 115 0 3 chr1 5945808 5946121 -276247543 + AluSq SINE Alu 1 312 -1 892 285 139 50 chr1 5946746 5947805 -276245859 - L2 LINE L2 -2 3311 2086 2316 118 3 3 chr1 5947805 5948118 -276245546 + AluSq SINE Alu 1 313 0 892 285 139 50 chr1 5948118 5948161 -276245503 - L2 LINE L2 -1227 2086 2048 1134 275 193 15 chr1 5948227 5948763 -276244901 - L2 LINE L2 -518 2796 2116 2160 134 0 10 chr1 5948763 5949068 -276244596 + AluSx SINE Alu 1 302 -10 1134 275 193 15 chr1 5949068 5949201 -276244463 - L2 LINE L2 -1198 2116 2008 43279 35 2 3 chr1 5949339 5955504 -276238160 + L1PA4 LINE L1 4 6155 0 181 222 44 0 chr1 5955547 5955592 -276238072 - L2 LINE L2 0 3272 3226 1657 81 36 5 chr1 5955705 5955926 -276237738 - AluSc SINE Alu -3 306 79 774 113 0 0 chr1 5956240 5956364 -276237300 + (CA)n Simple_repeat Simple_repeat 1 124 0 299 253 13 0 chr1 5958432 5958507 -276235157 + MIR3 SINE MIR 112 187 -21 193 370 50 0 chr1 5958920 5959020 -276234644 - L2 LINE L2 -6 3266 3162 399 224 0 0 chr1 5960595 5960702 -276232962 + (TG)n Simple_repeat Simple_repeat 2 108 0 263 258 124 0 chr1 5961489 5961578 -276232086 - MIR SINE MIR -77 185 86 1978 157 0 22 chr1 5961590 5961908 -276231756 + AluJb SINE Alu 1 311 -1 188 53 35 70 chr1 5962298 5962355 -276231309 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 240 317 67 0 chr1 5963137 5963257 -276230407 + MIR SINE MIR 121 248 -14 418 291 53 5 chr1 5963312 5963501 -276230163 + MIR SINE MIR 50 247 -15 374 327 53 68 chr1 5963683 5963895 -276229769 + L2 LINE L2 2966 3175 -97 2271 92 17 3 chr1 5963895 5964189 -276229475 - AluSq SINE Alu -13 300 3 374 327 53 68 chr1 5964189 5964257 -276229407 + L2 LINE L2 3175 3242 -30 3193 195 61 31 chr1 5965433 5966386 -276227278 + L1ME1 LINE L1 4304 5282 -864 15128 184 22 24 chr1 5966471 5967778 -276225886 + L1MA6 LINE L1 2097 3406 -4313 2299 143 18 39 chr1 5967778 5968219 -276225445 - MSTB1 LTR MaLR 0 432 1 15128 184 22 24 chr1 5968219 5969023 -276224641 + L1MA6 LINE L1 3406 4211 -3508 405 0 0 0 chr1 5969023 5969068 -276224596 + (TA)n Simple_repeat Simple_repeat 2 46 0 360 0 0 0 chr1 5969067 5969107 -276224557 + (GA)n Simple_repeat Simple_repeat 2 41 0 * 15128 184 22 24 chr1 5969068 5970818 -276222846 + L1MA6 LINE L1 4211 5964 -1755 2466 157 19 7 chr1 5970818 5971245 -276222419 - MSTB1 LTR MaLR 0 432 1 15128 184 22 24 chr1 5971245 5972079 -276221585 + L1MA6 LINE L1 5964 6799 -920 2353 115 0 0 chr1 5972079 5972392 -276221272 + AluSq SINE Alu 1 313 0 420 37 0 0 chr1 5972396 5972450 -276221214 + (CA)n Simple_repeat Simple_repeat 1 54 0 15128 184 22 24 chr1 5972450 5973699 -276219965 + L1MA6 LINE L1 6802 7719 0 1663 143 4 50 chr1 5973727 5974007 -276219657 + AluJo SINE Alu 44 310 -2 3011 221 48 39 chr1 5974015 5974192 -276219472 + L1ME1 LINE L1 5326 5500 -666 1568 144 9 114 chr1 5974192 5974364 -276219300 - AluJo SINE Alu -13 299 111 249 33 0 0 chr1 5974364 5974394 -276219270 + (ATTG)n Simple_repeat Simple_repeat 4 33 0 1927 118 22 4 chr1 5974394 5974665 -276218999 - AluSx SINE Alu -32 280 5 1568 144 9 114 chr1 5974665 5974707 -276218957 - AluJo SINE Alu -200 112 67 2292 98 10 0 chr1 5974707 5975003 -276218661 + AluSp SINE Alu 1 299 -14 1568 144 9 114 chr1 5975003 5975120 -276218544 - AluJo SINE Alu -245 67 1 3011 221 48 39 chr1 5975120 5975769 -276217895 + L1ME1 LINE L1 5500 6160 -6 347 271 0 0 chr1 5975791 5975876 -276217788 + MIR SINE MIR 78 162 -100 270 0 0 0 chr1 5975903 5975933 -276217731 + (CA)n Simple_repeat Simple_repeat 2 31 0 2322 91 14 0 chr1 5975965 5976261 -276217403 + AluSp SINE Alu 1 300 -13 300 287 17 9 chr1 5976655 5976770 -276216894 - MIR SINE MIR -84 178 63 378 254 145 29 chr1 5979067 5979205 -276214459 - MIR SINE MIR -62 200 47 254 400 52 0 chr1 5980473 5980628 -276213036 - MIR SINE MIR -50 212 50 1728 85 0 0 chr1 5981958 5982169 -276211495 + AluY SINE Alu 86 296 -15 181 234 170 21 chr1 5983312 5983406 -276210258 + L2 LINE L2 3185 3292 -21 396 217 0 0 chr1 5983415 5983553 -276210111 + (CAT)n Simple_repeat Simple_repeat 2 139 0 250 185 19 0 chr1 5983576 5983630 -276210034 + (CACCAT)n Simple_repeat Simple_repeat 1 55 0 801 264 39 43 chr1 5983633 5983887 -276209777 - MIR SINE MIR -6 256 4 520 244 0 60 chr1 5984152 5984320 -276209344 + L2 LINE L2 3156 3313 0 401 0 20 0 chr1 5984387 5984436 -276209228 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 707 272 46 22 chr1 5984978 5985340 -276208324 + MLT1J LTR MaLR 1 431 -80 6423 13 5 0 chr1 5985340 5986123 -276207541 + L1PA3 LINE L1 5385 6171 0 707 272 46 22 chr1 5986123 5986198 -276207466 + MLT1J LTR MaLR 431 503 -8 234 213 0 0 chr1 5986293 5986340 -276207324 + MIR SINE MIR 203 249 -13 2353 103 3 0 chr1 5986665 5986966 -276206698 - AluSp SINE Alu -9 304 3 1986 194 36 2 chr1 5988485 5988934 -276204730 - L1MB5 LINE L1 0 6174 5711 728 251 22 27 chr1 5989158 5989314 -276204350 - MER58A DNA MER1_type -2197 223 67 1892 125 4 7 chr1 5989314 5989586 -276204078 - AluSx SINE Alu -4 308 38 728 251 22 27 chr1 5989586 5989652 -276204012 - MER58A DNA MER1_type -2353 67 2 356 331 106 11 chr1 5989670 5989954 -276203710 + MLT1K LTR MaLR 188 498 -90 255 294 78 10 chr1 5992362 5992464 -276201200 + MIR SINE MIR 49 157 -105 721 201 16 58 chr1 5993971 5994160 -276199504 + MER20 DNA MER1_type 39 219 0 448 332 65 14 chr1 5994388 5994605 -276199059 + MIR SINE MIR 2 229 -33 190 370 43 0 chr1 5995264 5995356 -276198308 + MIR SINE MIR 29 124 -84 292 253 152 40 chr1 5995360 5995459 -276198205 - MER20 DNA MER1_type -109 110 1 2207 95 3 11 chr1 5995701 5996021 -276197643 + AluSx SINE Alu 1 318 0 2537 81 0 0 chr1 5996050 5996360 -276197304 + AluY SINE Alu 1 310 -1 1036 262 128 19 chr1 5997426 5997849 -276195815 + MER77 LTR ERV1 122 590 -15 200 342 25 0 chr1 5998482 5998561 -276195103 - L2 LINE L2 -8 3264 3184 262 235 141 24 chr1 6001123 6001208 -276192456 - L2 LINE L2 -3 3310 3216 324 70 0 0 chr1 6002361 6002404 -276191260 + (TTCA)n Simple_repeat Simple_repeat 1 43 0 485 121 0 48 chr1 6002733 6002816 -276190848 + AluJ/FRAM SINE Alu 222 300 -12 1025 165 43 0 chr1 6002839 6003027 -276190637 + MLT1A1 LTR MaLR 170 365 0 235 302 12 23 chr1 6003035 6003121 -276190543 + L2 LINE L2 3228 3312 -1 228 269 90 30 chr1 6003193 6003327 -276190337 + MIR3 SINE MIR 67 208 0 224 250 44 19 chr1 6004741 6004901 -276188763 + (CAACT)n Simple_repeat Simple_repeat 1 164 0 233 330 60 13 chr1 6005791 6006012 -276187652 + L2 LINE L2 2973 3270 -2 506 258 35 61 chr1 6006632 6006830 -276186834 - MIR SINE MIR -19 243 51 1891 178 102 2 chr1 6006992 6007413 -276186251 + MLT1C LTR MaLR 1 463 -4 317 265 102 7 chr1 6009702 6009849 -276183815 - MIR SINE MIR -57 205 45 490 311 78 5 chr1 6010336 6010542 -276183122 - MIR SINE MIR -41 221 1 680 270 148 33 chr1 6011286 6011830 -276181834 - L2 LINE L2 -266 3047 2421 1039 127 6 19 chr1 6011846 6012027 -276181637 - AluJb SINE Alu 0 312 134 2246 127 0 13 chr1 6012027 6012342 -276181322 - AluSx SINE Alu -1 311 1 4994 126 15 11 chr1 6012395 6012813 -276180851 + L1PA15 LINE L1 5355 5779 -386 2613 64 0 3 chr1 6012813 6013124 -276180540 + AluY SINE Alu 1 310 -1 4994 126 15 11 chr1 6013124 6013512 -276180152 + L1PA15 LINE L1 5779 6164 -1 2387 106 6 0 chr1 6013538 6013849 -276179815 + AluSq SINE Alu 1 313 0 496 305 7 0 chr1 6013849 6014003 -276179661 - L2 LINE L2 -952 2362 2208 260 244 0 61 chr1 6014079 6014161 -276179503 - MIR SINE MIR -104 158 82 255 229 9 29 chr1 6015043 6015148 -276178516 + CT-rich Low_complexity Low_complexity 6 108 0 219 69 0 0 chr1 6016510 6016539 -276177125 + (CA)n Simple_repeat Simple_repeat 1 29 0 232 288 100 75 chr1 6016600 6016760 -276176904 + L3 LINE CR1 1335 1498 -79 1309 224 101 0 chr1 6017428 6017776 -276175888 + MLT1B LTR MaLR 1 383 -7 1246 232 46 41 chr1 6019278 6019717 -276173947 + MLT1C LTR MaLR 11 451 -16 385 293 69 43 chr1 6020882 6021070 -276172594 - MIR3 SINE MIR -3 205 13 684 271 74 29 chr1 6021871 6022211 -276171453 + L1ME LINE L1 4982 5363 -801 2347 70 3 17 chr1 6022211 6022513 -276171151 + AluY SINE Alu 1 298 -13 684 271 74 29 chr1 6022513 6022772 -276170892 + L1ME LINE L1 5363 5609 -555 668 278 66 8 chr1 6022791 6023037 -276170627 + MLT1H1 LTR MaLR 1 242 -288 249 132 0 0 chr1 6023181 6023219 -276170445 + MLT1C LTR MaLR 558 595 0 568 326 25 18 chr1 6023231 6023507 -276170157 + L1ME3A LINE L1 5670 5947 -223 198 298 38 51 chr1 6024495 6024653 -276169011 + MIR3 SINE MIR 47 202 -6 380 297 8 17 chr1 6025161 6025279 -276168385 + MIR SINE MIR 106 222 -40 303 321 47 0 chr1 6026376 6026482 -276167182 + L2 LINE L2 3156 3266 -6 564 101 0 0 chr1 6026490 6026579 -276167085 + (TGGA)n Simple_repeat Simple_repeat 4 92 0 270 153 0 0 chr1 6026666 6026725 -276166939 + GA-rich Low_complexity Low_complexity 4 62 0 1185 206 5 5 chr1 6027017 6027235 -276166429 + MER58A DNA MER1_type 7 224 0 2167 131 20 3 chr1 6027365 6027670 -276165994 + AluSx SINE Alu 1 310 -2 248 204 273 18 chr1 6027739 6027864 -276165800 + MIR3 SINE MIR 5 153 -64 270 250 15 0 chr1 6027864 6027932 -276165732 + L2 LINE L2 3016 3084 -229 590 203 8 8 chr1 6027948 6028076 -276165588 - L1MB8 LINE L1 0 6178 6051 1778 139 186 6 chr1 6028102 6028462 -276165202 + MSTA LTR MaLR 4 428 0 347 237 0 0 chr1 6028462 6028538 -276165126 - L1MB3 LINE L1 -19 6164 6089 457 306 111 5 chr1 6028544 6028760 -276164904 + L2 LINE L2 3075 3313 0 252 167 19 0 chr1 6029142 6029196 -276164468 - MLT2C2 LTR ERVL 0 520 466 285 139 28 14 chr1 6029209 6029281 -276164383 + (TA)n Simple_repeat Simple_repeat 1 73 0 1392 177 28 32 chr1 6029281 6029563 -276164101 - MLT2C2 LTR ERVL -35 429 149 982 164 6 17 chr1 6029763 6029940 -276163724 - MLT2D LTR ERVL -239 175 1 213 65 0 0 chr1 6032091 6032122 -276161542 + (C)n Simple_repeat Simple_repeat 1 31 0 180 125 0 0 chr1 6034418 6034450 -276159214 + (TG)n Simple_repeat Simple_repeat 1 32 0 332 231 194 22 chr1 6035640 6035774 -276157890 + Charlie1 DNA MER1_type 82 238 -2523 * 494 148 8 141 chr1 6035771 6035899 -276157765 + Charlie1 DNA MER1_type 2631 2741 -20 189 0 0 0 chr1 6036002 6036023 -276157641 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1961 102 15 0 chr1 6036028 6036302 -276157362 - AluSq SINE Alu -35 278 1 22 35 0 0 chr1 6037886 6037915 -276155749 + AT_rich Low_complexity Low_complexity 1 29 0 659 260 78 70 chr1 6038253 6038737 -276154927 + L1MEd LINE L1 700 1179 -5131 1455 168 29 19 chr1 6038737 6039046 -276154618 - AluJb SINE Alu 0 312 1 659 260 78 70 chr1 6039046 6039520 -276154144 + L1MEd LINE L1 1179 1697 -4613 1182 254 126 36 chr1 6039553 6039829 -276153835 + L2 LINE L2 1541 1791 -1523 2291 50 40 10 chr1 6039829 6040127 -276153537 - AluY SINE Alu -4 307 1 1182 254 126 36 chr1 6040127 6040436 -276153228 + L2 LINE L2 1791 2179 -1135 2116 187 52 16 chr1 6040439 6040883 -276152781 - MLT1C LTR MaLR 0 467 8 211 284 40 0 chr1 6040883 6040957 -276152707 + L2 LINE L2 2196 2272 -1042 480 179 42 0 chr1 6041008 6041103 -276152561 + MER69 DNA AcHobo 2424 2522 -4 1986 127 0 0 chr1 6041103 6041416 -276152248 + AluSx SINE Alu 1 313 0 870 269 146 25 chr1 6041433 6042177 -276151487 + L2 LINE L2 2250 3313 0 1643 71 5 0 chr1 6042439 6042651 -276151013 - AluSg/x SINE Alu -14 296 84 733 261 159 46 chr1 6042774 6043383 -276150281 + L1MEd LINE L1 2093 2770 -3359 475 277 8 23 chr1 6043424 6043554 -276150110 - L2 LINE L2 -1 3312 3185 959 124 0 20 chr1 6043601 6043754 -276149910 + AluSg/x SINE Alu 163 312 0 505 277 8 0 chr1 6043817 6043936 -276149728 - L2 LINE L2 -239 3074 2955 382 238 54 30 chr1 6043957 6044125 -276149539 + L1MEd LINE L1 2828 2999 -3130 294 163 58 12 chr1 6044245 6044331 -276149333 + GA-rich Low_complexity Low_complexity 2 91 0 711 270 34 6 chr1 6044335 6044661 -276149003 + L1MEd LINE L1 3100 3434 -2695 313 170 0 0 chr1 6044658 6044711 -276148953 - L1ME LINE L1 -600 5566 5514 * 850 204 64 0 chr1 6044755 6044927 -276148737 + MER58A DNA MER1_type 42 224 0 1046 287 51 29 chr1 6045007 6045418 -276148246 + HERV16 LTR ERVL 422 841 -4155 1369 276 71 19 chr1 6045546 6046013 -276147651 + HERV16 LTR ERVL 1011 1501 -3495 2471 281 77 41 chr1 6046018 6046948 -276146716 + HERV16 LTR ERVL 1661 2624 -2372 1393 261 19 44 chr1 6046953 6047473 -276146191 + L1MEd LINE L1 3932 4438 -1691 360 255 51 20 chr1 6047479 6047577 -276146087 + L2 LINE L2 3199 3299 -14 186 43 0 0 chr1 6047578 6047601 -276146063 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 2497 111 98 0 chr1 6047643 6048031 -276145633 - MSTA LTR MaLR -2 426 1 216 246 0 88 chr1 6048156 6048213 -276145451 + L2 LINE L2 3136 3187 -85 385 224 12 12 chr1 6048388 6048473 -276145191 - L2 LINE L2 -1 3312 3228 229 189 57 0 chr1 6049452 6049505 -276144159 - Charlie2 DNA MER1_type -27 2835 2780 645 236 118 0 chr1 6049759 6049920 -276143744 - MIR SINE MIR -21 241 62 285 304 82 86 chr1 6050386 6050629 -276143035 + L2 LINE L2 2995 3236 -36 306 305 0 0 chr1 6050743 6050825 -276142839 - MIR SINE MIR -3 259 178 1321 211 85 58 chr1 6050841 6051014 -276142650 + MLT1C LTR MaLR 11 178 -289 2302 133 5 29 chr1 6051014 6051398 -276142266 + THE1C LTR MaLR 1 375 0 1321 211 85 58 chr1 6051398 6051669 -276141995 + MLT1C LTR MaLR 178 467 0 219 345 43 9 chr1 6051704 6051820 -276141844 - MIR3 SINE MIR -85 123 4 217 369 71 20 chr1 6053020 6053218 -276140446 + L3 LINE CR1 1250 1457 -120 9292 228 98 30 chr1 6055361 6056231 -276137433 + L1ME1 LINE L1 384 1193 -4907 1906 134 0 0 chr1 6056231 6056506 -276137158 + AluSx SINE Alu 1 275 -37 1106 65 18 12 chr1 6056512 6056682 -276136982 + (GAAA)n Simple_repeat Simple_repeat 2 172 0 9292 228 98 30 chr1 6056682 6056726 -276136938 + L1ME1 LINE L1 1197 1237 -4863 1136 231 5 0 chr1 6056726 6056947 -276136717 + MER58A DNA MER1_type 1 222 -2 9292 228 98 30 chr1 6056947 6057663 -276136001 + L1ME1 LINE L1 1237 1903 -4197 2615 35 0 0 chr1 6057663 6057974 -276135690 + AluYa5 SINE Alu 1 311 0 9292 228 98 30 chr1 6057974 6060178 -276133486 + L1ME1 LINE L1 1903 4689 -1411 1427 194 113 7 chr1 6060178 6060487 -276133177 + MER2 DNA MER2_type 3 344 0 9292 228 98 30 chr1 6060487 6061836 -276131828 + L1ME1 LINE L1 4689 5944 -156 507 304 84 49 chr1 6061896 6062989 -276130675 + L1MC/D LINE L1 4636 5802 -803 1498 214 9 24 chr1 6063019 6063355 -276130309 - L1MB4 LINE L1 -9 6171 5841 633 276 190 6 chr1 6063363 6063689 -276129975 + L2 LINE L2 2927 3312 -1 661 281 17 22 chr1 6064100 6064278 -276129386 - MIR SINE MIR -1 261 85 2279 84 0 3 chr1 6066570 6066867 -276126797 - AluSq SINE Alu -17 296 1 492 227 0 25 chr1 6067287 6067425 -276126239 + MER69A DNA AcHobo 1 135 -42 374 250 33 0 chr1 6068154 6068246 -276125418 - MIR SINE MIR -78 130 36 228 276 121 0 chr1 6068503 6068561 -276125103 + L2 LINE L2 3206 3270 -2 484 332 101 29 chr1 6069328 6069714 -276123950 + L1MEc LINE L1 42 455 -5941 1516 297 109 18 chr1 6070233 6070846 -276122818 + L2 LINE L2 1955 2623 -691 669 236 18 48 chr1 6070885 6071050 -276122614 + MIR SINE MIR 12 171 -91 1172 242 118 25 chr1 6071097 6071452 -276122212 + MLT1E LTR MaLR 206 593 0 371 315 163 0 chr1 6071452 6071630 -276122034 + L2 LINE L2 3107 3313 0 229 252 63 63 chr1 6071763 6071874 -276121790 - L2 LINE L2 -20 3293 3183 502 290 98 27 chr1 6071995 6072219 -276121445 - MIR SINE MIR -17 245 6 24 0 0 0 chr1 6075092 6075116 -276118548 + AT_rich Low_complexity Low_complexity 1 24 0 214 215 215 11 chr1 6075784 6075877 -276117787 - MIR SINE MIR -37 225 114 423 244 21 20 chr1 6076248 6076374 -276117290 + MIR SINE MIR 20 147 -61 208 200 22 0 chr1 6076530 6076575 -276117089 + (TAA)n Simple_repeat Simple_repeat 1 46 0 620 231 6 27 chr1 6077166 6077328 -276116336 - MLT1C LTR MaLR 0 603 330 1215 207 78 51 chr1 6077344 6077716 -276115948 - MLT1C LTR MaLR -80 387 6 205 133 0 0 chr1 6077760 6077790 -276115874 - MIR SINE MIR -63 145 116 2693 118 70 0 chr1 6077997 6078395 -276115269 + MSTA LTR MaLR 1 426 -2 500 324 88 6 chr1 6079056 6079226 -276114438 + MIR SINE MIR 17 200 -62 1367 179 135 39 chr1 6079231 6079638 -276114026 + MLT1J2 LTR MaLR 5 450 0 411 244 22 0 chr1 6080395 6080485 -276113179 - MIR SINE MIR -114 148 57 250 337 47 0 chr1 6081130 6081216 -276112448 + L2 LINE L2 3153 3242 -30 189 306 53 0 chr1 6082448 6082567 -276111097 - L2 LINE L2 -289 3024 2893 2286 92 0 0 chr1 6082762 6083082 -276110582 + AluSg SINE Alu 3 322 0 334 0 0 0 chr1 6083045 6083135 -276110529 + (TAA)n Simple_repeat Simple_repeat 1 90 0 189 342 67 58 chr1 6083447 6083894 -276109770 - L2 LINE L2 -714 2600 2150 452 259 17 0 chr1 6084198 6084314 -276109350 - L1ME LINE L1 -337 5784 5667 272 318 62 34 chr1 6084637 6084816 -276108848 - L2 LINE L2 -1235 2079 1896 203 302 32 0 chr1 6085177 6085240 -276108424 + MIR3 SINE MIR 121 185 -23 411 21 0 0 chr1 6085414 6085462 -276108202 + (CA)n Simple_repeat Simple_repeat 1 48 0 351 307 126 36 chr1 6088142 6088562 -276105102 + L2 LINE L2 2855 3312 -1 326 206 93 10 chr1 6088636 6088733 -276104931 + MIR SINE MIR 36 140 -122 289 310 28 35 chr1 6089072 6089214 -276104450 + L1ME LINE L1 5523 5663 -458 192 154 0 26 chr1 6089230 6089269 -276104395 + L2 LINE L2 3266 3303 -10 226 315 43 0 chr1 6089289 6089381 -276104283 + L1ME LINE L1 5688 5783 -338 324 0 0 0 chr1 6089769 6089805 -276103859 + (CA)n Simple_repeat Simple_repeat 2 37 0 8452 228 54 32 chr1 6089903 6090655 -276103009 - L1MCa LINE L1 -1364 4851 4117 2258 106 0 7 chr1 6090655 6090957 -276102707 + AluSc SINE Alu 3 302 -7 234 0 0 0 chr1 6090957 6090983 -276102681 + (TA)n Simple_repeat Simple_repeat 2 27 0 8452 228 54 32 chr1 6090983 6092086 -276101578 - L1MCa LINE L1 -2098 4117 3039 2303 111 0 16 chr1 6092086 6092402 -276101262 - AluSx SINE Alu -1 311 1 8452 228 54 32 chr1 6092402 6093513 -276100151 - L1MCa LINE L1 -3176 3039 1841 4167 177 62 17 chr1 6093500 6094374 -276099290 - L1MB7 LINE L1 -1 6183 5271 * 3200 199 11 48 chr1 6094388 6095188 -276098476 - L1MB7 LINE L1 -1055 5091 4321 1015 241 113 3 chr1 6095186 6095559 -276098105 - L1MB7 LINE L1 -2521 3625 3212 * 441 0 0 0 chr1 6095647 6095696 -276097968 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 412 242 15 0 chr1 6095698 6095830 -276097834 - L1MB7 LINE L1 -2892 3254 3121 1275 239 28 63 chr1 6095838 6096235 -276097429 - MLT1B LTR MaLR -7 383 1 333 232 71 0 chr1 6096249 6096361 -276097303 - L1MB7 LINE L1 -3036 3110 2991 497 219 6 84 chr1 6096366 6096439 -276097225 - L1MCa LINE L1 -4533 1863 1786 591 260 0 0 chr1 6096439 6096562 -276097102 - FLAM_A SINE Alu -10 123 1 497 219 6 84 chr1 6096562 6096666 -276096998 - L1MCa LINE L1 -4610 1786 1700 2407 95 0 3 chr1 6096666 6096970 -276096694 + AluSq SINE Alu 1 303 -10 462 204 0 0 chr1 6096972 6097070 -276096594 + (TATG)n Simple_repeat Simple_repeat 3 100 0 733 266 139 33 chr1 6097096 6097678 -276095986 - L1MCa LINE L1 -4656 1561 876 2188 243 52 19 chr1 6097678 6098249 -276095415 + MLT1E LTR MaLR 1 590 -3 1009 312 46 15 chr1 6098258 6098803 -276094861 - L1MCa LINE L1 -5331 1065 504 804 288 58 53 chr1 6098827 6099313 -276094351 - L1MCa LINE L1 -5866 530 43 395 301 66 0 chr1 6100662 6100798 -276092866 + L2 LINE L2 3169 3313 0 855 163 141 105 chr1 6101478 6101648 -276092016 - MER33 DNA MER1_type -2261 324 137 2178 123 0 23 chr1 6101648 6101957 -276091707 + AluSx SINE Alu 1 302 -10 855 163 141 105 chr1 6101957 6102099 -276091565 - MER33 DNA MER1_type -2448 137 1 407 183 19 10 chr1 6102974 6103078 -276090586 + MER5A DNA MER1_type 11 115 -74 2311 89 0 0 chr1 6104691 6104982 -276088682 - AluSq SINE Alu -22 291 1 1181 163 20 0 chr1 6107051 6107247 -276086417 + MER58A DNA MER1_type 1 200 -24 278 276 26 60 chr1 6107275 6107391 -276086273 - L2 LINE L2 -1 3312 3201 194 351 106 61 chr1 6107391 6107684 -276085980 + L3b LINE CR1 1183 1488 -95 367 285 181 0 chr1 6107740 6107884 -276085780 - MER5A DNA MER1_type -6 183 14 551 187 179 0 chr1 6109451 6109585 -276084079 - MER53 DNA DNA 0 189 32 222 232 36 0 chr1 6109950 6110006 -276083658 + MIR SINE MIR 136 193 -69 1108 197 4 56 chr1 6110131 6110380 -276083284 + MLT1A1 LTR MaLR 10 245 -120 906 170 13 0 chr1 6110449 6110602 -276083062 + MLT1A1 LTR MaLR 211 365 0 2535 52 7 3 chr1 6110677 6110984 -276082680 - AluY SINE Alu -3 308 1 22 35 0 0 chr1 6111025 6111054 -276082610 + AT_rich Low_complexity Low_complexity 1 29 0 28 29 0 0 chr1 6111927 6111962 -276081702 + AT_rich Low_complexity Low_complexity 1 35 0 1914 90 0 11 chr1 6111962 6112230 -276081434 - L1PA7 LINE L1 -3 6151 5887 546 262 37 21 chr1 6113493 6113680 -276079984 + MIR SINE MIR 11 200 -62 459 269 200 28 chr1 6114907 6115339 -276078325 + L1ME2 LINE L1 5367 5885 -279 258 136 0 0 chr1 6115364 6115408 -276078256 + (CA)n Simple_repeat Simple_repeat 1 44 0 205 281 123 18 chr1 6115563 6115677 -276077987 + L2 LINE L2 3181 3306 -7 1863 112 34 4 chr1 6120323 6120591 -276073073 + AluSq SINE Alu 30 305 -8 256 159 0 0 chr1 6120976 6121020 -276072644 - MIR SINE MIR -78 184 141 639 254 25 99 chr1 6121151 6121505 -276072159 + LTR16C LTR ERVL 163 490 -1 21 0 0 0 chr1 6121913 6121934 -276071730 + AT_rich Low_complexity Low_complexity 1 21 0 221 30 61 0 chr1 6122001 6122034 -276071630 + (TATG)n Simple_repeat Simple_repeat 4 38 0 238 160 0 20 chr1 6122036 6122086 -276071578 + LTR66 LTR ERVL 394 442 -168 4083 89 6 18 chr1 6122144 6122356 -276071308 + L1P LINE L1 4380 4593 -1553 7777 29 0 0 chr1 6122356 6123450 -276070214 - L1PA4 LINE L1 0 6155 5063 4083 89 6 18 chr1 6123450 6123939 -276069725 + L1PA4 LINE L1 4593 5058 -1088 357 330 40 60 chr1 6123929 6124270 -276069394 + L1M4 LINE L1 4564 4891 -1255 * 2430 81 13 0 chr1 6124270 6124451 -276069213 - AluY SINE Alu 0 311 123 351 0 0 0 chr1 6124451 6124490 -276069174 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2430 81 13 0 chr1 6124490 6124615 -276069049 - AluY SINE Alu -188 123 1 357 330 40 60 chr1 6124615 6124843 -276068821 + L1M4 LINE L1 4891 5122 -1024 5556 181 55 32 chr1 6124881 6126423 -276067241 - L1M4 LINE L1 -590 5588 4020 1810 150 56 7 chr1 6126456 6126743 -276066921 + AluSx SINE Alu 1 301 -11 2871 197 24 100 chr1 6126743 6127179 -276066485 + L1MC5 LINE L1 6859 7327 -634 2189 127 61 58 chr1 6127179 6127574 -276066090 + MSTD LTR MaLR 1 396 0 2871 197 24 100 chr1 6127574 6128188 -276065476 + L1MC5 LINE L1 7327 7829 -132 188 321 46 30 chr1 6128263 6128365 -276065299 + L2 LINE L2 3136 3242 -30 2222 115 3 0 chr1 6128365 6128660 -276065004 - AluSx SINE Alu -16 296 1 188 321 46 30 chr1 6128660 6128688 -276064976 + L2 LINE L2 3242 3268 -4 550 251 84 11 chr1 6128794 6128985 -276064679 - MIR SINE MIR -44 218 14 267 244 0 26 chr1 6129121 6129199 -276064465 + L1MC5 LINE L1 7840 7915 -46 285 290 30 60 chr1 6129220 6129320 -276064344 + MIR SINE MIR 20 116 -146 464 303 27 11 chr1 6130536 6130724 -276062940 - MIR SINE MIR -12 250 60 1984 130 7 7 chr1 6131618 6131917 -276061747 - AluSx SINE Alu -13 299 1 187 219 0 96 chr1 6131944 6132017 -276061647 - MIR SINE MIR -35 227 162 2178 131 0 0 chr1 6132175 6132473 -276061191 + AluSx SINE Alu 1 298 -14 222 328 168 42 chr1 6132688 6132807 -276060857 - L2 LINE L2 -4 3309 3176 253 289 58 19 chr1 6133391 6133495 -276060169 - L2 LINE L2 -232 3040 2933 * 291 273 106 15 chr1 6133491 6133623 -276060041 - L2 LINE L2 -491 2823 2680 383 207 97 48 chr1 6134606 6134751 -276058913 - L2 LINE L2 -10 3303 3152 194 228 152 33 chr1 6135404 6135496 -276058168 - MIR SINE MIR -71 191 89 2011 121 7 17 chr1 6135589 6135887 -276057777 + AluSx SINE Alu 1 295 -17 207 0 0 0 chr1 6135888 6135911 -276057753 + (TC)n Simple_repeat Simple_repeat 1 23 0 * 216 0 0 0 chr1 6135910 6135934 -276057730 + (CA)n Simple_repeat Simple_repeat 1 24 0 194 191 21 0 chr1 6137602 6137649 -276056015 + CT-rich Low_complexity Low_complexity 3 50 0 477 188 0 43 chr1 6137653 6137839 -276055825 + C-rich Low_complexity Low_complexity 3 180 0 450 64 0 64 chr1 6138863 6138941 -276054723 - Alu SINE Alu -236 73 1 2158 106 0 6 chr1 6139633 6139944 -276053720 + AluSp SINE Alu 1 309 -4 2331 75 0 3 chr1 6140129 6140435 -276053229 + AluY SINE Alu 1 305 -6 324 259 101 84 chr1 6140456 6140803 -276052861 + L1ME4a LINE L1 5768 6120 -1 2212 82 3 3 chr1 6141878 6142170 -276051494 + AluY SINE Alu 1 292 -19 208 167 19 37 chr1 6143754 6143808 -276049856 + L2 LINE L2 3026 3078 -194 402 187 0 0 chr1 6143853 6143944 -276049720 + (CA)n Simple_repeat Simple_repeat 1 91 0 202 289 228 35 chr1 6143954 6144068 -276049596 + L2 LINE L2 3136 3271 -1 261 57 0 0 chr1 6144080 6144115 -276049549 + (TGGG)n Simple_repeat Simple_repeat 2 36 0 253 330 136 11 chr1 6144308 6144484 -276049180 - MIR SINE MIR -32 230 33 372 43 0 0 chr1 6145312 6145358 -276048306 + (TG)n Simple_repeat Simple_repeat 1 46 0 329 314 107 6 chr1 6145459 6145618 -276048046 - MIR SINE MIR -66 196 22 247 299 26 17 chr1 6145717 6145834 -276047830 + MER103 DNA DNA 1 118 -48 182 37 37 0 chr1 6145955 6145982 -276047682 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 183 296 19 0 chr1 6147024 6147078 -276046586 - L2 LINE L2 0 3272 3218 1756 182 34 58 chr1 6147160 6147373 -276046291 - MLT1A2 LTR MaLR -2 372 170 860 148 0 15 chr1 6147373 6147508 -276046156 - FLAM_C SINE Alu 0 133 1 1756 182 34 58 chr1 6147508 6147673 -276045991 - MLT1A2 LTR MaLR -204 170 3 270 0 0 0 chr1 6147689 6147719 -276045945 + (T)n Simple_repeat Simple_repeat 1 30 0 1055 133 6 12 chr1 6147737 6147902 -276045762 - U1 snRNA snRNA -1 164 1 625 313 72 23 chr1 6149747 6149852 -276043812 + L1MD1 LINE L1 2147 2245 -3901 2419 115 33 8 chr1 6149852 6150218 -276043446 - THE1C LTR MaLR 0 375 1 625 313 72 23 chr1 6150218 6150416 -276043248 + L1MD1 LINE L1 2245 2465 -3681 1512 167 31 0 chr1 6150459 6150717 -276042947 + AluSx SINE Alu 1 266 -46 269 118 20 0 chr1 6150723 6150774 -276042890 + GA-rich Low_complexity Low_complexity 1 52 0 2250 133 123 5 chr1 6150920 6151303 -276042361 + MSTA LTR MaLR 1 428 0 344 299 58 7 chr1 6151356 6151493 -276042171 + L1MD1 LINE L1 2680 2823 -3323 486 220 112 100 chr1 6151509 6151573 -276042091 + L1MD1 LINE L1 2903 2965 -3181 2217 101 0 0 chr1 6151573 6151871 -276041793 + AluSx SINE Alu 6 303 -9 486 220 112 100 chr1 6151871 6152056 -276041608 + L1MD1 LINE L1 2965 3155 -2991 5277 192 35 36 chr1 6152178 6152596 -276041068 + L1MD1 LINE L1 4735 5152 -1090 2079 131 0 0 chr1 6152596 6152901 -276040763 + AluY SINE Alu 1 305 -6 5277 192 35 36 chr1 6152901 6152914 -276040750 + L1MD1 LINE L1 5152 5164 -1078 6318 35 0 0 chr1 6152914 6153653 -276040011 + L1PA4 LINE L1 5416 6154 -1 5277 192 35 36 chr1 6153653 6154737 -276038927 + L1MD1 LINE L1 5164 6242 0 2283 220 106 82 chr1 6154725 6155678 -276037986 + L1MC4a LINE L1 5870 6845 -963 * 1271 237 12 36 chr1 6155677 6156010 -276037654 + L1ME2 LINE L1 5821 6145 -19 * 372 317 32 68 chr1 6156058 6156279 -276037385 + L1MC4 LINE L1 7829 8041 -1 4398 191 48 66 chr1 6156288 6157450 -276036214 + L1MC4 LINE L1 6914 7995 0 186 187 55 143 chr1 6158746 6158837 -276034827 - L2 LINE L2 -91 3222 3140 203 268 18 0 chr1 6158957 6159013 -276034651 + (CAAA)n Simple_repeat Simple_repeat 1 57 0 275 273 50 72 chr1 6159978 6160117 -276033547 + L2 LINE L2 3127 3262 -10 349 292 42 14 chr1 6160437 6160581 -276033083 + L1ME2 LINE L1 5443 5590 -574 500 234 45 7 chr1 6160584 6160738 -276032926 + L1ME2 LINE L1 5727 5886 -284 1023 281 93 24 chr1 6160816 6161578 -276032086 + L1M4 LINE L1 4369 5183 -963 * 11125 208 45 29 chr1 6161572 6161859 -276031805 + L1MB7 LINE L1 2237 2518 -3666 1826 131 18 0 chr1 6161859 6162133 -276031531 + AluSq SINE Alu 1 279 -34 2365 77 3 3 chr1 6162133 6162444 -276031220 + AluY SINE Alu 1 311 0 11125 208 45 29 chr1 6162444 6162467 -276031197 + L1MB7 LINE L1 2518 2539 -3645 237 65 0 0 chr1 6162467 6162498 -276031166 + (TAA)n Simple_repeat Simple_repeat 2 32 0 11125 208 45 29 chr1 6162498 6163124 -276030540 + L1MB7 LINE L1 2539 3154 -3030 2402 56 0 28 chr1 6163124 6163444 -276030220 + AluY SINE Alu 1 311 0 11125 208 45 29 chr1 6163444 6166386 -276027278 + L1MB7 LINE L1 3154 6183 -1 2673 168 61 99 chr1 6166391 6167225 -276026439 + L1MC4 LINE L1 7241 8042 0 244 174 0 212 chr1 6167235 6167367 -276026297 + L1ME2 LINE L1 5894 5997 -167 421 300 43 43 chr1 6168124 6168354 -276025310 - L2 LINE L2 -1 3312 3083 397 298 55 38 chr1 6168478 6168713 -276024951 - L2 LINE L2 -257 3056 2818 300 268 115 38 chr1 6169425 6169582 -276024082 + MIR SINE MIR 47 215 -47 450 0 0 0 chr1 6169583 6169633 -276024031 + (TG)n Simple_repeat Simple_repeat 1 50 0 1675 136 213 28 chr1 6170866 6171227 -276022437 - MSTA LTR MaLR 0 428 1 2128 105 7 0 chr1 6171231 6171525 -276022139 - AluSx SINE Alu -16 296 1 428 325 54 30 chr1 6171757 6172052 -276021612 - MLT1I LTR MaLR -66 343 42 23 33 0 0 chr1 6172839 6172869 -276020795 + AT_rich Low_complexity Low_complexity 1 30 0 2127 91 3 7 chr1 6173895 6174193 -276019471 - AluSx SINE Alu -15 297 1 324 289 132 0 chr1 6174454 6174568 -276019096 + MIR SINE MIR 47 175 -87 296 218 158 45 chr1 6175248 6175381 -276018283 - MIR3 SINE MIR -28 180 33 479 264 104 12 chr1 6176332 6176495 -276017169 + MIR SINE MIR 70 247 -15 235 258 10 31 chr1 6176831 6176928 -276016736 + (CATATA)n Simple_repeat Simple_repeat 1 95 0 6185 98 10 9 chr1 6176972 6177866 -276015798 - L1PB1 LINE L1 -1 6150 5256 525 245 31 33 chr1 6177889 6178114 -276015550 - L1MC4a LINE L1 -224 5897 5670 3733 183 24 6 chr1 6178241 6178964 -276014700 + L1MB3 LINE L1 5441 6176 -7 2122 111 54 40 chr1 6178997 6179367 -276014297 + THE1C LTR MaLR 1 375 0 23 33 0 0 chr1 6179639 6179669 -276013995 + AT_rich Low_complexity Low_complexity 1 30 0 234 207 103 0 chr1 6179970 6180028 -276013636 - MER5C DNA MER1_type -234 90 27 211 192 77 19 chr1 6180498 6180550 -276013114 + L2 LINE L2 3259 3313 0 262 230 81 14 chr1 6180647 6180721 -276012943 - MIR SINE MIR -107 101 23 220 271 84 19 chr1 6180835 6180942 -276012722 - MIR SINE MIR -6 256 143 2386 167 119 101 chr1 6180944 6181723 -276011941 - L1MD3 LINE L1 0 8042 7262 2462 231 85 37 chr1 6181781 6182734 -276010930 - L1MC4a LINE L1 -885 6923 5925 3827 95 39 0 chr1 6182742 6183308 -276010356 - L1MA2 LINE L1 0 6304 5717 326 264 181 19 chr1 6183374 6183529 -276010135 - L1ME1 LINE L1 -5 6161 5982 2193 232 83 36 chr1 6183532 6183862 -276009802 - L1MC4a LINE L1 -743 5403 5500 2067 174 76 2 chr1 6183862 6184259 -276009405 + MSTB LTR MaLR 1 426 0 2193 232 83 36 chr1 6184259 6184745 -276008919 - L1MC4a LINE L1 -645 5501 5039 1029 184 192 16 chr1 6184748 6185003 -276008661 - AluY SINE Alu -11 300 1 2551 304 87 25 chr1 6185004 6186450 -276007214 - L1MC4a LINE L1 -1102 5044 3690 1700 177 20 0 chr1 6186450 6186750 -276006914 + AluJb SINE Alu 1 306 -6 2551 304 87 25 chr1 6186750 6186891 -276006773 - L1MC4a LINE L1 -2456 3690 3559 2027 108 31 0 chr1 6186891 6187177 -276006487 - AluSq SINE Alu -18 295 1 2551 304 87 25 chr1 6187177 6188047 -276005617 - L1MC4a LINE L1 -2587 3559 2432 657 222 13 20 chr1 6190283 6190436 -276003228 + MLT1J2 LTR MaLR 36 187 -263 261 83 0 0 chr1 6192182 6192218 -276001446 + (CA)n Simple_repeat Simple_repeat 2 37 0 23 0 0 0 chr1 6193545 6193568 -276000096 + AT_rich Low_complexity Low_complexity 1 23 0 1982 129 3 3 chr1 6193574 6193868 -275999796 + AluSp SINE Alu 1 294 -19 2118 105 10 0 chr1 6194812 6195108 -275998556 + AluSq SINE Alu 1 299 -14 2089 201 23 12 chr1 6195227 6195659 -275998005 + L1MB5 LINE L1 5732 6168 -6 217 272 99 25 chr1 6195739 6195820 -275997844 - L2 LINE L2 -5 3308 3222 213 160 67 143 chr1 6195827 6195946 -275997718 - L2 LINE L2 -237 3035 2926 1642 250 117 101 chr1 6196170 6196518 -275997146 + L1MB8 LINE L1 2507 2848 -3316 3543 60 2 0 chr1 6196518 6196964 -275996700 + L1PA8 LINE L1 5726 6172 0 1642 250 117 101 chr1 6196964 6197435 -275996229 + L1MB8 LINE L1 2848 3310 -2854 1677 131 16 74 chr1 6197435 6197747 -275995917 + AluSx SINE Alu 1 294 -18 1642 250 117 101 chr1 6197747 6198559 -275995105 + L1MB8 LINE L1 3310 4108 -2056 2073 109 0 3 chr1 6198559 6198867 -275994797 + AluSx SINE Alu 2 308 0 1642 250 117 101 chr1 6198867 6199226 -275994438 + L1MB8 LINE L1 4108 4460 -1704 1705 152 46 7 chr1 6199226 6199498 -275994166 + AluJo SINE Alu 1 286 -26 246 62 0 0 chr1 6199498 6199530 -275994134 + (TTAA)n Simple_repeat Simple_repeat 3 34 0 1642 250 117 101 chr1 6199540 6200153 -275993511 + L1MB8 LINE L1 4460 5161 -1003 2125 110 0 10 chr1 6200153 6200453 -275993211 + AluSx SINE Alu 3 299 -13 1642 250 117 101 chr1 6200453 6200730 -275992934 + L1MB8 LINE L1 5161 5432 -732 292 301 77 42 chr1 6200738 6200881 -275992783 + L1M1 LINE L1 5500 5647 -658 2333 72 0 0 chr1 6200896 6201188 -275992476 + AluY SINE Alu 1 292 -19 2117 122 0 0 chr1 6201530 6201834 -275991830 + AluSx SINE Alu 1 304 -8 325 302 71 39 chr1 6203233 6203415 -275990249 - L2 LINE L2 -2 3311 3124 730 331 131 21 chr1 6203426 6204199 -275989465 + L2 LINE L2 187 1044 -2270 200 234 94 0 chr1 6204240 6204304 -275989360 + L2 LINE L2 2627 2696 -618 2951 210 19 26 chr1 6204335 6204960 -275988704 + L1MB8 LINE L1 5538 6158 -20 640 316 73 29 chr1 6204970 6205495 -275988169 + L2 LINE L2 2724 3284 -29 2212 130 41 36 chr1 6205495 6205857 -275987807 - THE1B LTR MaLR 0 364 1 640 316 73 29 chr1 6205857 6205888 -275987776 + L2 LINE L2 3284 3312 -1 632 333 134 19 chr1 6205894 6206880 -275986784 - L2 LINE L2 -216 3056 1895 1826 129 42 11 chr1 6207011 6207297 -275986367 - AluSq SINE Alu -18 295 1 210 211 0 0 chr1 6207309 6207347 -275986317 - MIR SINE MIR -14 248 211 1726 159 13 29 chr1 6207413 6207728 -275985936 + AluJo SINE Alu 1 310 -2 189 298 0 0 chr1 6208338 6208385 -275985279 - L3 LINE CR1 -1161 416 370 332 223 25 122 chr1 6208489 6208686 -275984978 - L1MC4 LINE L1 -1 8041 7864 2626 232 32 41 chr1 6208747 6209085 -275984579 - L1ME2 LINE L1 -10 6154 5814 2454 53 0 0 chr1 6209085 6209384 -275984280 - AluY SINE Alu -12 299 1 2626 232 32 41 chr1 6209384 6209795 -275983869 - L1ME2 LINE L1 -350 5814 5412 2362 74 0 6 chr1 6209888 6210200 -275983464 - AluY SINE Alu -1 310 1 393 338 17 79 chr1 6210758 6210964 -275982700 + L2 LINE L2 3000 3184 -88 1724 111 12 80 chr1 6210964 6211288 -275982376 - AluSq SINE Alu -8 305 4 393 338 17 79 chr1 6211288 6211371 -275982293 + L2 LINE L2 3184 3271 -1 1191 151 10 0 chr1 6211539 6211731 -275981933 + AluJb SINE Alu 9 202 -110 180 345 54 24 chr1 6213211 6213379 -275980285 - MIR3 SINE MIR -32 176 4 874 219 80 0 chr1 6216600 6216787 -275976877 + MER20 DNA MER1_type 1 202 -17 234 89 36 18 chr1 6218883 6218939 -275974725 + (TG)n Simple_repeat Simple_repeat 1 57 0 397 199 29 14 chr1 6218983 6219260 -275974404 + (TG)n Simple_repeat Simple_repeat 1 281 0 417 204 36 0 chr1 6219296 6219463 -275974201 + (TG)n Simple_repeat Simple_repeat 1 173 0 390 196 32 6 chr1 6219507 6219665 -275973999 + (TG)n Simple_repeat Simple_repeat 1 162 0 290 219 22 17 chr1 6219681 6219822 -275973842 + (TG)n Simple_repeat Simple_repeat 1 145 -34 2354 73 0 13 chr1 6219822 6220123 -275973541 - AluY SINE Alu -14 297 1 290 219 22 17 chr1 6220123 6220159 -275973505 + (TG)n Simple_repeat Simple_repeat 145 179 0 497 236 16 39 chr1 6220182 6220364 -275973300 + (TG)n Simple_repeat Simple_repeat 1 178 0 284 219 38 6 chr1 6220380 6220540 -275973124 + (TG)n Simple_repeat Simple_repeat 1 165 0 261 283 0 0 chr1 6221183 6221243 -275972421 + MIR SINE MIR 203 262 0 291 327 30 0 chr1 6221271 6221372 -275972292 - MIR SINE MIR -112 150 47 253 275 117 25 chr1 6222272 6222392 -275971272 + MIR SINE MIR 61 191 -71 1592 188 35 48 chr1 6222767 6222960 -275970704 + MLT1B LTR MaLR 7 194 -196 390 108 0 0 chr1 6222960 6223025 -275970639 + (CA)n Simple_repeat Simple_repeat 1 65 0 1592 188 35 48 chr1 6223025 6223204 -275970460 + MLT1B LTR MaLR 194 374 -16 2211 147 70 29 chr1 6224385 6224800 -275968864 - MSTB1 LTR MaLR 0 432 1 302 304 32 16 chr1 6225284 6225409 -275968255 + MIR3 SINE MIR 61 187 -21 218 262 0 0 chr1 6225549 6225591 -275968073 - MIR SINE MIR 0 262 221 184 326 0 0 chr1 6225559 6225605 -275968059 - L2 LINE L2 -16 3256 3211 * 24 0 0 0 chr1 6226501 6226525 -275967139 + AT_rich Low_complexity Low_complexity 1 24 0 692 242 86 90 chr1 6227048 6227304 -275966360 + MIR SINE MIR 3 257 -5 208 115 51 13 chr1 6227882 6227960 -275965704 + (TA)n Simple_repeat Simple_repeat 2 82 0 349 266 121 62 chr1 6227965 6228221 -275965443 + L1MC5 LINE L1 7572 7842 -119 208 135 0 0 chr1 6228223 6228260 -275965404 + (TA)n Simple_repeat Simple_repeat 2 38 0 2027 128 0 0 chr1 6228260 6228548 -275965116 - AluSx SINE Alu -23 289 2 551 323 138 14 chr1 6228952 6228970 -275964694 - L2 LINE L2 -4 3309 3295 1922 140 0 19 chr1 6228970 6229285 -275964379 + AluJo SINE Alu 1 309 -3 551 323 138 14 chr1 6229285 6229828 -275963836 - L2 LINE L2 -18 3295 1153 2847 286 149 18 chr1 6229957 6231320 -275962344 - L2 LINE L2 -685 2629 1089 352 228 22 0 chr1 6231324 6231416 -275962248 + MLT1J1 LTR MaLR 345 438 -8 947 263 13 52 chr1 6231429 6231737 -275961927 - L2 LINE L2 -2591 723 428 2095 141 10 10 chr1 6231737 6231844 -275961820 - L1P4 LINE L1 -573 5593 5488 2348 115 0 3 chr1 6231844 6232157 -275961507 - AluSq SINE Alu -1 312 1 2095 141 10 10 chr1 6232157 6232461 -275961203 - L1P4 LINE L1 -678 5488 5183 550 194 24 11 chr1 6232438 6232576 -275961088 - L1PA16 LINE L1 -445 5721 5623 * 2622 129 13 22 chr1 6232584 6232654 -275961010 + L1PA16 LINE L1 5711 5780 -386 1773 158 46 23 chr1 6232654 6232772 -275960892 + AluJb SINE Alu 1 115 -197 189 0 0 0 chr1 6232772 6232793 -275960871 + (TAA)n Simple_repeat Simple_repeat 2 22 0 1773 158 46 23 chr1 6232793 6232978 -275960686 + AluJb SINE Alu 115 311 -1 2622 129 13 22 chr1 6232978 6233356 -275960308 + L1PA16 LINE L1 5780 6155 -11 338 250 34 11 chr1 6233433 6233521 -275960143 - L2 LINE L2 -2877 437 348 448 222 98 39 chr1 6233566 6233719 -275959945 + L1ME1 LINE L1 19 180 -6216 * 2033 262 58 9 chr1 6233715 6234462 -275959202 + L1ME1 LINE L1 3248 4030 -2185 529 269 8 0 chr1 6234465 6234599 -275959065 + L1MD3 LINE L1 7797 7931 -64 528 188 0 0 chr1 6234601 6234697 -275958967 - AluJ/FLAM SINE Alu -215 97 2 1394 142 0 10 chr1 6234771 6234968 -275958696 + AluJo SINE Alu 85 279 -33 2432 236 34 73 chr1 6234996 6235179 -275958485 + L1ME1 LINE L1 4606 4795 -1440 285 29 0 0 chr1 6235179 6235213 -275958451 + (TG)n Simple_repeat Simple_repeat 2 35 0 2108 91 18 0 chr1 6235214 6235488 -275958176 - AluSx SINE Alu -33 279 1 2432 236 34 73 chr1 6235488 6236010 -275957654 + L1ME1 LINE L1 4795 5336 -899 2547 76 0 0 chr1 6236010 6236311 -275957353 + AluSc SINE Alu 1 301 -8 2432 236 34 73 chr1 6236311 6237023 -275956641 + L1ME1 LINE L1 5336 5944 -291 2097 131 0 7 chr1 6237023 6237306 -275956358 + AluSx SINE Alu 1 283 -29 324 0 0 0 chr1 6237306 6237342 -275956322 + (CA)n Simple_repeat Simple_repeat 1 36 0 2432 236 34 73 chr1 6237348 6237626 -275956038 + L1ME1 LINE L1 5944 6231 -4 307 228 0 87 chr1 6237642 6237734 -275955930 - MIR SINE MIR -101 161 78 208 250 190 50 chr1 6238024 6238124 -275955540 + MIR SINE MIR 35 148 -114 2227 128 10 0 chr1 6238124 6238430 -275955234 + AluSx SINE Alu 1 309 -3 1251 112 12 0 chr1 6238441 6238602 -275955062 + AluSg/x SINE Alu 133 295 -15 394 273 181 12 chr1 6238655 6238900 -275954764 + L2 LINE L2 2773 3060 -253 2434 184 32 31 chr1 6238900 6239423 -275954241 - MER68 LTR ERV1 -1 561 38 207 0 0 0 chr1 6239991 6240014 -275953650 + (A)n Simple_repeat Simple_repeat 1 23 0 2474 80 3 0 chr1 6240193 6240493 -275953171 + AluY SINE Alu 1 301 -10 1708 169 52 33 chr1 6241009 6241377 -275952287 + THE1C LTR MaLR 1 375 0 419 293 75 63 chr1 6241586 6241921 -275951743 + L2 LINE L2 2909 3247 -25 261 119 0 0 chr1 6241932 6241974 -275951690 + (TGAA)n Simple_repeat Simple_repeat 4 45 0 991 220 59 84 chr1 6243770 6244161 -275949503 + MLT1B LTR MaLR 4 384 -6 278 316 103 0 chr1 6244217 6244391 -275949273 - L2 LINE L2 -505 2809 2618 1971 253 69 23 chr1 6246565 6247131 -275946533 + MLT1E LTR MaLR 1 592 -1 611 217 84 7 chr1 6247133 6247276 -275946388 + MIR SINE MIR 37 190 -72 710 242 36 16 chr1 6247294 6247488 -275946176 + MER105 DNA DNA 7 204 0 1262 152 13 45 chr1 6248747 6248971 -275944693 + AluJo SINE Alu 86 302 -10 235 257 54 14 chr1 6249617 6249691 -275943973 - MER63 DNA MER1_type 0 1062 986 288 229 165 28 chr1 6249702 6249811 -275943853 - MER63 DNA MER1_type -81 755 6 2349 82 7 7 chr1 6249991 6250284 -275943380 + AluSq SINE Alu 1 293 -20 2569 48 10 16 chr1 6250310 6250623 -275943041 + AluY SINE Alu 1 311 0 1234 227 24 66 chr1 6251206 6251778 -275941886 + MLT2B1 LTR ERVL 1 442 -112 622 231 8 0 chr1 6251746 6251974 -275941690 + MLT2B1 LTR ERVL 267 397 -123 * 622 231 8 0 chr1 6251942 6252366 -275941298 + MLT2B1 LTR ERVL 267 397 -123 * 1237 214 6 59 chr1 6252334 6252684 -275940980 + MLT2B1 LTR ERVL 267 634 114 1522 87 31 26 chr1 6252684 6252913 -275940751 - MER30 DNA MER1_type 0 230 1 1237 214 6 59 chr1 6252913 6252931 -275940733 + MLT2B1 LTR ERVL 634 474 -46 204 40 0 0 chr1 6252931 6252956 -275940708 + (CA)n Simple_repeat Simple_repeat 2 26 0 1237 214 6 59 chr1 6252956 6253002 -275940662 + MLT2B1 LTR ERVL 473 520 0 306 250 139 9 chr1 6254727 6254835 -275938829 + MIR SINE MIR 32 153 -109 218 249 73 146 chr1 6255293 6255349 -275938315 - MIR SINE MIR -55 207 148 2304 120 0 0 chr1 6255349 6255658 -275938006 - AluY SINE Alu -2 309 1 218 249 73 146 chr1 6255658 6255806 -275937858 - MIR SINE MIR -114 148 18 1828 216 35 46 chr1 6255913 6256394 -275937270 + MLT1D LTR MaLR 8 483 -22 500 236 40 27 chr1 6257612 6257760 -275935904 + MER117 DNA MER1_type 1 150 -47 264 305 11 12 chr1 6257790 6257903 -275935761 - MIR3 SINE MIR -52 156 40 1493 241 84 44 chr1 6257959 6258528 -275935136 + MLT1E LTR MaLR 1 592 -1 207 339 9 26 chr1 6258575 6258690 -275934974 + L2 LINE L2 1945 2057 -1257 518 232 153 23 chr1 6258882 6259059 -275934605 - MIR SINE MIR -31 231 32 662 238 24 0 chr1 6259101 6259265 -275934399 - MER20 DNA MER1_type -21 198 31 372 94 0 0 chr1 6259959 6260012 -275933652 + (CA)n Simple_repeat Simple_repeat 1 53 0 242 258 72 62 chr1 6260086 6260183 -275933481 + L2 LINE L2 3169 3266 -6 460 211 18 18 chr1 6260718 6260827 -275932837 + MIR SINE MIR 45 153 -55 299 264 14 14 chr1 6260874 6261022 -275932642 + CT-rich Low_complexity Low_complexity 1 148 0 2039 134 14 3 chr1 6261310 6261601 -275932063 - AluJb SINE Alu -18 294 1 308 189 14 0 chr1 6262869 6262943 -275930721 + (TG)n Simple_repeat Simple_repeat 2 76 0 546 202 26 16 chr1 6263000 6263547 -275930117 + (TG)n Simple_repeat Simple_repeat 1 552 0 600 172 20 26 chr1 6263576 6263920 -275929744 + (TG)n Simple_repeat Simple_repeat 1 342 0 326 279 0 23 chr1 6264263 6264349 -275929315 + L2 LINE L2 3184 3267 -5 506 133 11 0 chr1 6265191 6265281 -275928383 + (TG)n Simple_repeat Simple_repeat 2 92 0 458 323 15 13 chr1 6265304 6265618 -275928046 + (TG)n Simple_repeat Simple_repeat 1 314 0 862 312 42 45 chr1 6266925 6267566 -275926098 + HAL1 LINE L1 69 707 -1800 769 246 75 12 chr1 6267651 6267903 -275925761 + HAL1 LINE L1 2240 2507 0 2081 112 7 7 chr1 6267911 6268197 -275925467 + AluSx SINE Alu 1 286 -26 288 200 0 0 chr1 6269102 6269162 -275924502 + (CA)n Simple_repeat Simple_repeat 1 60 0 1692 160 56 14 chr1 6269233 6269589 -275924075 - L1MB3 LINE L1 0 6183 5813 193 409 27 9 chr1 6271679 6271789 -275921875 + MIR SINE MIR 9 120 -142 576 299 28 71 chr1 6271961 6272285 -275921379 - L2 LINE L2 -1 3312 3003 333 311 31 88 chr1 6273318 6273513 -275920151 - MIR SINE MIR -56 152 9 734 184 69 17 chr1 6273938 6274112 -275919552 + MER5A DNA MER1_type 1 183 -6 547 317 11 63 chr1 6274250 6274616 -275919048 + MLT1I LTR MaLR 63 409 0 273 316 67 97 chr1 6277323 6277665 -275915999 + L2 LINE L2 2938 3269 -3 513 0 0 0 chr1 6277672 6277729 -275915935 + (GGATG)n Simple_repeat Simple_repeat 4 60 0 384 297 90 19 chr1 6277915 6278070 -275915594 + MIR SINE MIR 18 183 -79 204 244 0 0 chr1 6278726 6278767 -275914897 - L2 LINE L2 -5 3267 3227 779 241 59 15 chr1 6279484 6279687 -275913977 - MIR SINE MIR -38 224 13 258 288 144 8 chr1 6280143 6280261 -275913403 - MIR3 SINE MIR -49 159 26 2238 211 65 0 chr1 6280342 6280835 -275912829 + L1MB5 LINE L1 5650 6174 0 622 198 112 99 chr1 6282063 6282127 -275911537 - MER33 DNA MER1_type -2263 322 260 1089 81 0 7 chr1 6282127 6282275 -275911389 + L1PA8 LINE L1 6022 6168 -4 622 198 112 99 chr1 6282275 6282524 -275911140 - MER33 DNA MER1_type -2325 260 5 240 185 0 0 chr1 6283059 6283113 -275910551 + (TA)n Simple_repeat Simple_repeat 2 55 0 21 0 0 0 chr1 6283583 6283604 -275910060 + AT_rich Low_complexity Low_complexity 1 21 0 340 324 101 45 chr1 6284236 6284591 -275909073 - L2 LINE L2 -1 3271 2897 468 0 0 0 chr1 6284769 6284821 -275908843 + (TCTA)n Simple_repeat Simple_repeat 4 55 0 1811 158 0 0 chr1 6284821 6285106 -275908558 - AluSx SINE Alu -27 285 1 689 274 99 16 chr1 6285327 6285641 -275908023 + MER102b DNA MER1_type 1 340 -1 577 235 0 41 chr1 6285823 6285993 -275907671 + LTR41 LTR ERVL 1 163 -610 205 211 0 0 chr1 6286017 6286055 -275907609 + (TTA)n Simple_repeat Simple_repeat 2 39 0 339 250 16 80 chr1 6286312 6286500 -275907164 + LTR41 LTR ERVL 597 772 -1 1498 110 0 0 chr1 6286510 6286730 -275906934 + AluSg/x SINE Alu 84 303 0 248 242 0 29 chr1 6287032 6287100 -275906564 + MIR SINE MIR 78 144 -64 380 246 16 25 chr1 6287176 6287298 -275906366 - L1ME1 LINE L1 -6 6160 6040 663 273 56 41 chr1 6287307 6287490 -275906174 - L1MDa LINE L1 -4631 1909 1717 1963 130 7 7 chr1 6287490 6287789 -275905875 + AluSx SINE Alu 2 300 -12 663 273 56 41 chr1 6287789 6287946 -275905718 - L1MDa LINE L1 -4823 1717 1564 1183 330 43 20 chr1 6287960 6288665 -275904999 - L1MDa LINE L1 -5657 1064 344 222 37 0 0 chr1 6289244 6289271 -275904393 + (TG)n Simple_repeat Simple_repeat 1 27 0 2032 152 3 44 chr1 6340123 6340486 -275853178 - MER7A DNA MER2_type 0 346 1 1026 148 12 6 chr1 6342548 6342717 -275850947 + AluJb SINE Alu 133 302 -10 299 306 10 93 chr1 6343300 6343493 -275850171 - MIR3 SINE MIR -3 205 29 2132 132 6 6 chr1 6343817 6344128 -275849536 - AluSx SINE Alu 0 312 2 315 267 0 0 chr1 6344409 6344495 -275849169 + L1MD2 LINE L1 5803 5888 -471 2047 117 81 119 chr1 6344589 6345034 -275848630 + MSTA LTR MaLR 1 428 0 24 0 0 0 chr1 6345142 6345166 -275848498 + AT_rich Low_complexity Low_complexity 1 24 0 209 265 0 0 chr1 6345678 6345727 -275847937 - L3 LINE CR1 -1 1576 1528 815 285 185 20 chr1 6347112 6347168 -275846496 - L2 LINE L2 -609 2705 2660 2105 136 16 10 chr1 6347168 6347477 -275846187 + AluSx SINE Alu 1 311 -1 815 285 185 20 chr1 6347477 6348107 -275845557 - L2 LINE L2 -654 2660 1906 289 245 358 6 chr1 6348110 6348473 -275845191 - L2 LINE L2 -1528 1786 1296 185 307 109 36 chr1 6348580 6348772 -275844892 - L2 LINE L2 -153 3160 2955 666 200 166 0 chr1 6348927 6349072 -275844592 + AluSp SINE Alu 137 305 -8 200 184 0 0 chr1 6349532 6349570 -275844094 + G-rich Low_complexity Low_complexity 4 41 0 261 294 0 15 chr1 6349688 6349756 -275843908 - MIR SINE MIR -170 92 26 198 345 45 9 chr1 6349971 6350081 -275843583 + MIR SINE MIR 19 132 -76 198 240 104 31 chr1 6351065 6351161 -275842503 - MIR3 SINE MIR -18 190 88 23 33 0 0 chr1 6353259 6353289 -275840375 + AT_rich Low_complexity Low_complexity 1 30 0 341 209 0 30 chr1 6353929 6353996 -275839668 + HAL1b LINE L1 1279 1343 -5 248 196 34 80 chr1 6355024 6355147 -275838517 + L1MD3 LINE L1 7904 8030 -12 2171 137 0 13 chr1 6355147 6355453 -275838211 + AluSx SINE Alu 1 302 -10 248 196 34 80 chr1 6355453 6355466 -275838198 + L1MD3 LINE L1 8030 8042 0 240 245 85 9 chr1 6355493 6355599 -275838065 + L1ME2 LINE L1 5954 6067 -97 1119 182 48 0 chr1 6357002 6357211 -275836453 + MER20 DNA MER1_type 1 219 0 1060 324 91 22 chr1 6357312 6357772 -275835892 + L3 LINE CR1 281 772 -805 2283 97 3 3 chr1 6358026 6358324 -275835340 + AluSg SINE Alu 3 300 -10 433 346 31 0 chr1 6359023 6359182 -275834482 + MIR SINE MIR 7 170 -92 376 310 66 19 chr1 6359634 6359905 -275833759 - L1ME3A LINE L1 -208 5962 5679 1692 195 51 95 chr1 6359934 6360254 -275833410 + Charlie1a DNA MER1_type 2 288 -2473 2234 109 7 0 chr1 6360254 6360548 -275833116 - AluSq SINE Alu -17 296 1 1692 195 51 95 chr1 6360548 6360795 -275832869 + Charlie1a DNA MER1_type 288 544 -911 3388 239 73 43 chr1 6360795 6361215 -275832449 + L1MEc LINE L1 36 442 -5773 2125 116 7 0 chr1 6361215 6361507 -275832157 + AluSg1 SINE Alu 1 294 -15 3388 239 73 43 chr1 6361507 6361774 -275831890 + L1MEc LINE L1 442 699 -5516 2461 91 0 3 chr1 6361774 6362082 -275831582 + AluSx SINE Alu 1 307 -5 3388 239 73 43 chr1 6362082 6363403 -275830261 + L1MEc LINE L1 699 1978 -4237 1985 152 3 0 chr1 6363403 6363712 -275829952 + AluSx SINE Alu 1 310 0 3388 239 73 43 chr1 6363712 6363827 -275829837 + L1MEc LINE L1 1978 2088 -4127 2146 116 0 7 chr1 6363827 6364121 -275829543 + AluY SINE Alu 1 292 -19 3388 239 73 43 chr1 6364121 6364466 -275829198 + L1MEc LINE L1 2088 2586 -3629 314 122 54 189 chr1 6364573 6364721 -275828943 + L1MEc LINE L1 2779 2906 -3309 3440 156 43 84 chr1 6364725 6365648 -275828016 + Charlie1a DNA MER1_type 571 1455 0 2334 71 44 3 chr1 6365787 6366082 -275827582 - AluY SINE Alu -4 307 1 369 302 132 15 chr1 6366130 6366338 -275827326 - MIR SINE MIR -19 243 16 357 232 40 73 chr1 6366360 6366511 -275827153 + L2 LINE L2 3084 3229 -84 2397 105 0 0 chr1 6367105 6367409 -275826255 + AluSx SINE Alu 9 312 0 2269 99 24 0 chr1 6368374 6368666 -275824998 + AluSc SINE Alu 1 299 -10 1988 149 0 10 chr1 6369158 6369453 -275824211 - AluJo SINE Alu -6 306 15 405 290 40 112 chr1 6369468 6369771 -275823893 + L2 LINE L2 2985 3265 -7 433 306 69 76 chr1 6370880 6371155 -275822509 - L1MCa LINE L1 -4757 1372 939 2425 99 0 3 chr1 6371244 6371556 -275822108 - AluSx SINE Alu -1 311 1 305 319 43 94 chr1 6371556 6372298 -275821366 - L1MCa LINE L1 -5113 1006 303 326 272 128 16 chr1 6372358 6372483 -275821181 - L1MCa LINE L1 -5933 186 48 275 174 41 143 chr1 6373225 6373323 -275820341 + MIR SINE MIR 35 122 -86 547 245 21 21 chr1 6373561 6373704 -275819960 - L1MA10 LINE L1 -3 6331 6189 743 189 11 0 chr1 6374447 6374622 -275819042 + (TCCA)n Simple_repeat Simple_repeat 4 180 0 607 206 11 0 chr1 6374639 6374814 -275818850 + (TCCA)n Simple_repeat Simple_repeat 2 178 0 431 257 254 50 chr1 6374850 6375247 -275818417 - L2 LINE L2 0 3313 2836 1712 174 7 4 chr1 6376532 6376808 -275816856 + AluJo SINE Alu 17 293 -19 1877 189 0 10 chr1 6376810 6377117 -275816547 + AluJb SINE Alu 1 304 -8 475 172 11 11 chr1 6377293 6377380 -275816284 - MER74B LTR ERVL -453 169 83 1620 236 64 79 chr1 6377398 6378130 -275815534 - L1ME LINE L1 -5348 722 2 390 316 61 27 chr1 6378330 6378659 -275815005 - L1MEd LINE L1 -3382 2747 2408 484 265 46 81 chr1 6378728 6378877 -275814787 - L1MEd LINE L1 -4888 1231 1093 2398 84 10 3 chr1 6378877 6379188 -275814476 - AluSq SINE Alu 0 313 1 484 265 46 81 chr1 6379188 6379298 -275814366 - L1MEd LINE L1 -5026 1093 981 1774 106 37 16 chr1 6379308 6379554 -275814110 - AluSx SINE Alu -13 299 49 218 236 135 47 chr1 6379621 6379769 -275813895 + L2 LINE L2 11 171 -3143 377 343 14 21 chr1 6379850 6379993 -275813671 + L2 LINE L2 3172 3313 0 880 131 56 0 chr1 6380134 6380294 -275813370 - L1MB3 LINE L1 -1 6182 6014 806 146 42 0 chr1 6380469 6380613 -275813051 - MSTA LTR MaLR 0 428 279 1709 174 42 0 chr1 6380614 6380901 -275812763 - AluJb SINE Alu -13 299 1 199 238 0 0 chr1 6382092 6382134 -275811530 - L3 LINE CR1 -1 1576 1535 316 237 206 0 chr1 6382455 6382552 -275811112 + L2 LINE L2 3197 3313 0 674 191 34 45 chr1 6384583 6384665 -275808999 - MER5B DNA MER1_type 0 178 97 2490 80 0 7 chr1 6384665 6384966 -275808698 - AluSx SINE Alu -13 299 1 674 191 34 45 chr1 6384966 6385061 -275808603 - MER5B DNA MER1_type -81 97 3 350 263 143 23 chr1 6387589 6387764 -275805900 - MLT1J LTR MaLR -309 202 7 293 245 53 0 chr1 6387775 6387869 -275805795 - L1M4 LINE L1 -3085 3061 2963 334 309 82 53 chr1 6387871 6388078 -275805586 - L1MC5 LINE L1 -30 7931 7719 1000 228 33 14 chr1 6388101 6388377 -275805287 - L1ME2 LINE L1 -10 6223 5943 210 37 0 0 chr1 6388383 6388410 -275805254 + (TA)n Simple_repeat Simple_repeat 1 27 0 563 127 45 82 chr1 6388421 6388555 -275805109 - L1PB3 LINE L1 -2 6152 6024 2552 174 67 72 chr1 6388559 6389286 -275804378 - L1ME2 LINE L1 -259 5974 5244 2064 126 0 10 chr1 6389286 6389579 -275804085 - AluSx SINE Alu -22 290 1 2552 174 67 72 chr1 6389579 6389640 -275804024 - L1ME2 LINE L1 -989 5244 5184 1835 172 10 10 chr1 6389640 6389948 -275803716 - AluJb SINE Alu -4 308 1 2552 174 67 72 chr1 6389948 6390084 -275803580 - L1ME2 LINE L1 -1049 5184 5071 2082 127 141 5 chr1 6390090 6390460 -275803204 - MSTA LTR MaLR -8 420 1 2420 179 61 7 chr1 6390460 6391030 -275802634 - L1ME2 LINE L1 -1148 5067 4467 1729 249 87 14 chr1 6391047 6392140 -275801524 - L1ME2 LINE L1 -3598 2617 1476 224 269 76 48 chr1 6392310 6392359 -275801305 + MIR3 SINE MIR 35 81 -127 2572 98 0 14 chr1 6392359 6392728 -275800936 - THE1B LTR MaLR 0 364 1 224 269 76 48 chr1 6392728 6392843 -275800821 + MIR3 SINE MIR 81 208 0 39 22 0 0 chr1 6394553 6394599 -275799065 + AT_rich Low_complexity Low_complexity 1 46 0 2291 104 0 0 chr1 6394612 6394901 -275798763 - AluSx SINE Alu -23 289 1 3189 105 2 25 chr1 6394901 6395415 -275798249 - L1MA2 LINE L1 -25 6279 5776 390 348 12 6 chr1 6395448 6395609 -275798055 + MIR SINE MIR 53 214 -48 2229 97 0 32 chr1 6395613 6395921 -275797743 + AluSc SINE Alu 1 298 -11 2744 82 0 0 chr1 6396131 6396495 -275797169 - THE1B LTR MaLR 0 364 1 1614 226 18 28 chr1 6397229 6397623 -275796041 + L1MB8 LINE L1 5784 6173 -5 181 330 17 51 chr1 6398062 6398180 -275795484 + MIR SINE MIR 34 147 -115 2845 186 3 42 chr1 6399574 6400101 -275793563 + L1MB1 LINE L1 5602 6105 -63 2309 131 0 0 chr1 6400101 6400414 -275793250 + AluSq SINE Alu 1 313 0 2845 186 3 42 chr1 6400414 6400476 -275793188 + L1MB1 LINE L1 6105 6168 0 204 299 51 34 chr1 6400666 6400783 -275792881 + L2 LINE L2 3150 3268 -4 25 65 0 0 chr1 6403082 6403128 -275790536 + AT_rich Low_complexity Low_complexity 1 46 0 583 266 57 11 chr1 6403131 6403308 -275790356 + L1MD2 LINE L1 5948 6132 -227 263 291 74 20 chr1 6403318 6403466 -275790198 + L1MD1 LINE L1 6079 6234 -8 191 167 241 0 chr1 6403608 6403662 -275790002 - MIR SINE MIR -89 173 107 359 250 205 0 chr1 6404673 6404785 -275788879 + L2 LINE L2 3179 3313 0 2306 119 3 0 chr1 6405991 6406293 -275787371 - AluSx SINE Alu -9 303 1 2084 137 0 7 chr1 6406445 6406745 -275786919 + AluSx SINE Alu 1 298 -14 1725 206 24 12 chr1 6406768 6407191 -275786473 + L1MB8 LINE L1 5751 6178 0 285 268 0 0 chr1 6408024 6408162 -275785502 + (CA)n Simple_repeat Simple_repeat 2 139 0 223 294 24 32 chr1 6409989 6410115 -275783549 + (CGGGG)n Simple_repeat Simple_repeat 5 129 0 211 293 0 0 chr1 6410942 6411000 -275782664 + G-rich Low_complexity Low_complexity 1 58 0 308 250 10 31 chr1 6412065 6412161 -275781503 + LTR67 LTR ERVL 459 552 -5 807 211 29 29 chr1 6412315 6412519 -275781145 + MIR SINE MIR 39 242 -20 419 322 49 83 chr1 6412574 6412838 -275780826 - L2 LINE L2 -18 3254 3000 579 267 78 0 chr1 6413224 6413427 -275780237 + MIR SINE MIR 25 250 -12 1886 194 25 75 chr1 6415513 6416044 -275777620 + MLT1D LTR MaLR 1 504 -1 183 220 80 0 chr1 6418685 6418735 -275774929 + MIR SINE MIR 81 134 -128 198 0 0 0 chr1 6419190 6419212 -275774452 + (GCTG)n Simple_repeat Simple_repeat 3 24 0 670 282 79 29 chr1 6420202 6420482 -275773182 + L1ME4a LINE L1 5800 6093 -28 2240 110 10 3 chr1 6420483 6420791 -275772873 - AluSx SINE Alu -2 310 1 26 30 0 0 chr1 6420825 6420858 -275772806 + AT_rich Low_complexity Low_complexity 1 33 0 2629 58 0 3 chr1 6420888 6421196 -275772468 - AluY SINE Alu -4 307 1 229 325 0 38 chr1 6421768 6421848 -275771816 - MIR SINE MIR -70 192 116 571 295 52 10 chr1 6421866 6422059 -275771605 - MIR SINE MIR -13 249 49 293 216 144 31 chr1 6422786 6422883 -275770781 + MLT1I LTR MaLR 294 401 -8 226 359 54 12 chr1 6423315 6423482 -275770182 + MIR SINE MIR 24 197 -65 205 319 121 14 chr1 6423485 6423626 -275770038 + MIR3 SINE MIR 17 172 -36 * 284 282 69 12 chr1 6423618 6423738 -275769926 - MIR SINE MIR -68 140 22 382 316 16 1 chr1 6424504 6424649 -275769015 + MIR SINE MIR 9 153 -62 317 254 16 56 chr1 6424774 6424900 -275768764 + MIR SINE MIR 94 214 -48 356 216 0 0 chr1 6425168 6425242 -275768422 + MIR SINE MIR 89 162 -100 4267 197 67 38 chr1 6425275 6425663 -275768001 + L1MB8 LINE L1 4105 4480 -1698 2031 112 10 26 chr1 6425663 6425967 -275767697 + AluSx SINE Alu 1 299 -13 4267 197 67 38 chr1 6425967 6426863 -275766801 + L1MB8 LINE L1 4480 5348 -830 1625 176 27 23 chr1 6426863 6427164 -275766500 + AluJo SINE Alu 11 312 0 4267 197 67 38 chr1 6427164 6427699 -275765965 + L1MB8 LINE L1 5348 5992 -186 1981 135 35 0 chr1 6427699 6427987 -275765677 + AluJb SINE Alu 1 298 -14 4267 197 67 38 chr1 6427987 6428180 -275765484 + L1MB8 LINE L1 5992 6178 0 441 229 97 21 chr1 6428182 6428326 -275765338 - L2 LINE L2 0 3313 3159 795 205 36 6 chr1 6428333 6428499 -275765165 - Tigger5 DNA MER2_type 0 2323 2153 655 155 17 9 chr1 6428491 6428607 -275765057 - Tigger5 DNA MER2_type -2206 117 1 * 398 249 136 86 chr1 6428607 6429015 -275764649 - L2 LINE L2 -160 3153 2708 2292 166 52 14 chr1 6429015 6429467 -275764197 + L1MB3 LINE L1 5682 6155 -28 2535 77 3 3 chr1 6429467 6429777 -275763887 - AluSg SINE Alu 0 310 1 2292 166 52 14 chr1 6429777 6429806 -275763858 + L1MB3 LINE L1 6155 6181 -2 398 249 136 86 chr1 6429806 6429896 -275763768 - L2 LINE L2 -605 2708 2624 204 254 0 0 chr1 6430119 6430178 -275763486 + GA-rich Low_complexity Low_complexity 4 62 0 1953 126 23 23 chr1 6430655 6430956 -275762708 - AluJo SINE Alu 0 312 12 30 45 0 0 chr1 6431076 6431120 -275762544 + AT_rich Low_complexity Low_complexity 1 44 0 186 133 0 0 chr1 6431255 6431285 -275762379 + (A)n Simple_repeat Simple_repeat 1 30 0 348 242 33 22 chr1 6431778 6431869 -275761795 + LTR16C LTR ERVL 388 479 -12 199 293 37 0 chr1 6432186 6432268 -275761396 + MIR3 SINE MIR 4 88 -120 1957 218 118 4 chr1 6432759 6433226 -275760438 + MLT2B1 LTR ERVL 1 520 0 255 115 0 77 chr1 6433341 6433393 -275760271 - L2 LINE L2 -93 3179 3132 403 276 55 0 chr1 6433393 6433520 -275760144 - L2 LINE L2 0 3313 3180 198 294 44 0 chr1 6434293 6434361 -275759303 + L2 LINE L2 3234 3304 -9 209 325 158 0 chr1 6435301 6435415 -275758249 + MIR SINE MIR 118 249 -13 983 101 0 57 chr1 6435424 6435919 -275757745 + (ATGGTG)n Simple_repeat Simple_repeat 1 647 0 740 86 27 54 chr1 6435930 6436155 -275757509 + (ATGGTG)n Simple_repeat Simple_repeat 1 218 0 736 113 16 48 chr1 6436166 6436352 -275757312 + (ATGGTG)n Simple_repeat Simple_repeat 1 180 0 2483 74 0 0 chr1 6436378 6436674 -275756990 - AluY SINE Alu -11 300 5 243 313 111 14 chr1 6437428 6437572 -275756092 + MIR3 SINE MIR 33 190 -18 205 119 48 0 chr1 6438684 6438726 -275754938 + G-rich Low_complexity Low_complexity 4 47 0 3433 191 62 58 chr1 6439348 6439826 -275753838 + L1ME1 LINE L1 4589 5063 -1271 2002 129 56 0 chr1 6439826 6440112 -275753552 + AluSx SINE Alu 1 302 -10 3433 191 62 58 chr1 6440112 6440162 -275753502 + L1ME1 LINE L1 5063 5111 -1223 773 196 144 7 chr1 6440162 6440315 -275753349 + FAM SINE Alu 1 174 -1 3433 191 62 58 chr1 6440315 6441370 -275752294 + L1ME1 LINE L1 5111 6333 -1 316 329 0 0 chr1 6441708 6441793 -275751871 + MIR SINE MIR 92 176 -86 193 97 0 0 chr1 6443262 6443293 -275750371 - L2 LINE L2 -313 2959 2929 2238 120 0 22 chr1 6443588 6443722 -275749942 + AluSg SINE Alu 1 136 -174 2330 60 3 3 chr1 6443722 6444036 -275749628 + AluY SINE Alu 1 314 0 2238 120 0 22 chr1 6444036 6444217 -275749447 + AluSg SINE Alu 136 310 0 24 0 0 0 chr1 6444357 6444381 -275749283 + AT_rich Low_complexity Low_complexity 1 24 0 368 338 53 13 chr1 6444541 6444769 -275748895 - L2 LINE L2 -214 3099 2863 2324 211 54 6 chr1 6445532 6446049 -275747615 + MER119 DNA MER1_type 2 543 -40 1400 176 59 0 chr1 6446049 6446166 -275747498 + AluJo SINE Alu 1 110 -202 186 43 0 0 chr1 6446166 6446189 -275747475 + (TGAA)n Simple_repeat Simple_repeat 3 25 0 1400 176 59 0 chr1 6446189 6446310 -275747354 + AluJo SINE Alu 110 253 -59 26 0 0 0 chr1 6446310 6446336 -275747328 + AT_rich Low_complexity Low_complexity 1 26 0 1820 175 0 28 chr1 6446342 6446662 -275747002 + AluJo SINE Alu 1 311 -1 997 177 19 18 chr1 6446669 6447091 -275746573 + GA-rich Low_complexity Low_complexity 1 600 0 234 285 146 35 chr1 6447224 6447368 -275746296 - MIR SINE MIR -36 226 67 529 290 14 0 chr1 6449130 6449268 -275744396 + L2 LINE L2 3173 3312 -1 198 319 153 0 chr1 6449565 6449637 -275744027 + L2 LINE L2 3168 3250 -22 778 258 154 30 chr1 6450582 6451083 -275742581 + MLT1F1 LTR MaLR 5 567 0 218 235 73 0 chr1 6451093 6451161 -275742503 + MIR SINE MIR 73 145 -117 2451 107 19 25 chr1 6451450 6451816 -275741848 + THE1B LTR MaLR 1 364 0 11447 103 9 15 chr1 6451816 6453405 -275740259 + THE1B-int LTR MaLR 1 1580 0 2423 108 28 19 chr1 6453405 6453766 -275739898 + THE1B LTR MaLR 1 364 0 390 310 249 18 chr1 6455629 6456184 -275737480 + L2 LINE L2 2230 2912 -402 * 547 306 62 65 chr1 6456183 6456601 -275737063 + L2 LINE L2 2855 3271 -1 231 342 43 17 chr1 6456640 6456757 -275736907 + L2 LINE L2 3143 3262 -10 193 310 101 62 chr1 6458896 6458977 -275734687 - L2 LINE L2 0 3313 3224 2090 127 10 0 chr1 6458977 6459277 -275734387 + AluSq SINE Alu 1 303 -10 193 310 101 62 chr1 6459277 6459324 -275734340 - L2 LINE L2 -89 3224 3180 191 200 100 0 chr1 6460287 6460337 -275733327 - MIR SINE MIR -123 139 85 202 186 0 34 chr1 6461351 6461410 -275732254 + GA-rich Low_complexity Low_complexity 3 59 0 188 339 15 0 chr1 6461474 6461539 -275732125 - L2 LINE L2 0 3272 3207 184 276 181 29 chr1 6466040 6466145 -275727519 + L2 LINE L2 3170 3290 -23 2309 121 0 3 chr1 6467882 6468195 -275725469 + AluSq SINE Alu 1 312 -1 1748 133 3 117 chr1 6468484 6468836 -275724828 + AluJo SINE Alu 1 312 0 365 307 163 40 chr1 6468843 6469273 -275724391 - L2 LINE L2 -1036 2278 1796 232 327 78 20 chr1 6469335 6469488 -275724176 - L2 LINE L2 -1002 2312 2151 2559 211 129 14 chr1 6469967 6470710 -275722954 - L1ME2 LINE L1 -1 6163 5335 * 2662 251 69 73 chr1 6470700 6471281 -275722383 - L1ME1 LINE L1 -39 6127 5545 2066 120 17 10 chr1 6471281 6471303 -275722361 - AluSx SINE Alu -8 304 284 306 0 0 0 chr1 6471303 6471337 -275722327 + (TG)n Simple_repeat Simple_repeat 1 34 0 2066 120 17 10 chr1 6471337 6471615 -275722049 - AluSx SINE Alu -28 284 2 2662 251 69 73 chr1 6471615 6472983 -275720681 - L1ME1 LINE L1 -621 5545 4200 369 109 0 0 chr1 6473895 6473950 -275719714 + (TG)n Simple_repeat Simple_repeat 2 56 0 2420 89 0 0 chr1 6474912 6475216 -275718448 - AluY SINE Alu -7 304 1 206 179 60 60 chr1 6476260 6476344 -275717320 + L2 LINE L2 2895 2978 -294 612 336 190 10 chr1 6477496 6478247 -275715417 - L2 LINE L2 -43 3270 2406 2180 62 72 10 chr1 6480198 6480489 -275713175 - AluSg SINE Alu -1 309 1 228 67 0 0 chr1 6480874 6480904 -275712760 + (A)n Simple_repeat Simple_repeat 1 30 0 238 280 27 13 chr1 6482240 6482315 -275711349 + L1MD3 LINE L1 7900 7975 -20 1603 185 7 23 chr1 6482617 6482925 -275710739 + AluJo SINE Alu 1 303 -9 207 100 0 0 chr1 6484651 6484681 -275708983 + (A)n Simple_repeat Simple_repeat 1 30 0 454 259 184 4 chr1 6485285 6485540 -275708124 - L2 LINE L2 -3 3310 3010 405 0 0 0 chr1 6489151 6489196 -275704468 + (TG)n Simple_repeat Simple_repeat 2 46 0 712 213 150 38 chr1 6489434 6489721 -275703943 + MER33 DNA MER1_type 2 320 -4 631 231 153 27 chr1 6489726 6490021 -275703643 + L2 LINE L2 802 1133 -2181 1632 264 125 80 chr1 6490021 6490296 -275703368 + L2 LINE L2 1720 1981 -1332 1582 139 13 0 chr1 6490296 6490526 -275703138 + AluSx SINE Alu 3 235 -77 1632 264 125 80 chr1 6490526 6491133 -275702531 + L2 LINE L2 1981 2559 -754 1469 218 65 12 chr1 6491133 6491454 -275702210 - MER58B DNA MER1_type 0 341 4 1632 264 125 80 chr1 6491454 6491490 -275702174 + L2 LINE L2 2559 2592 -721 1986 134 0 3 chr1 6491490 6491802 -275701862 - AluSg SINE Alu 0 311 1 1632 264 125 80 chr1 6491802 6492134 -275701530 + L2 LINE L2 2592 3036 -277 863 239 113 13 chr1 6492303 6492541 -275701123 + MIR SINE MIR 1 262 0 426 225 73 73 chr1 6492544 6492695 -275700969 + L2 LINE L2 3163 3313 0 1953 157 7 3 chr1 6492796 6493101 -275700563 + AluJb SINE Alu 1 306 -6 1207 192 77 27 chr1 6493111 6493408 -275700256 + AluJo SINE Alu 1 312 0 1652 135 37 80 chr1 6493557 6493883 -275699781 + AluJo SINE Alu 1 312 0 189 308 26 13 chr1 6495514 6495592 -275698072 - L2 LINE L2 -16 3256 3178 188 291 76 13 chr1 6496461 6496540 -275697124 + MIR3 SINE MIR 104 187 -21 2126 121 0 3 chr1 6496819 6497116 -275696548 + AluSq SINE Alu 1 296 -17 272 263 0 42 chr1 6497241 6497336 -275696328 + A-rich Low_complexity Low_complexity 3 93 0 213 214 0 54 chr1 6497714 6497770 -275695894 - MER5B DNA MER1_type -125 53 1 2042 99 34 14 chr1 6497897 6498191 -275695473 + AluSg SINE Alu 1 300 -10 414 266 63 19 chr1 6498324 6498482 -275695182 + MIR SINE MIR 47 211 -51 860 227 32 19 chr1 6498999 6499215 -275694449 - MIR SINE MIR -28 234 16 189 250 12 62 chr1 6499345 6499425 -275694239 - MIR SINE MIR -71 191 116 22 0 0 0 chr1 6500206 6500228 -275693436 + AT_rich Low_complexity Low_complexity 1 22 0 303 28 0 0 chr1 6501217 6501253 -275692411 + (TGG)n Simple_repeat Simple_repeat 3 38 0 24 32 0 0 chr1 6501598 6501629 -275692035 + AT_rich Low_complexity Low_complexity 1 31 0 306 0 0 0 chr1 6505116 6505150 -275688514 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 537 123 0 0 chr1 6505167 6505240 -275688424 - AluSg/x SINE Alu -36 273 201 1615 147 16 60 chr1 6505360 6505674 -275687990 + AluJo SINE Alu 1 300 -12 26 30 0 0 chr1 6505698 6505731 -275687933 + AT_rich Low_complexity Low_complexity 1 33 0 448 231 89 13 chr1 6506246 6506418 -275687246 + L1MA10 LINE L1 5986 6332 -2 279 335 37 69 chr1 6507134 6507322 -275686342 - MER5A DNA MER1_type 0 189 8 569 310 16 22 chr1 6507624 6507808 -275685856 + MIR SINE MIR 47 229 -33 201 329 198 6 chr1 6507823 6507990 -275685674 - MIR SINE MIR -12 250 52 195 279 29 0 chr1 6508085 6508153 -275685511 + L2 LINE L2 3203 3272 0 801 143 0 8 chr1 6508365 6508484 -275685180 + FLAM_C SINE Alu 1 118 -25 615 298 120 64 chr1 6508511 6509255 -275684409 - L2 LINE L2 -1 3271 2497 2801 172 60 14 chr1 6509275 6509846 -275683818 + L1MC3 LINE L1 7187 7783 -2 331 326 134 8 chr1 6509859 6510120 -275683544 - L2 LINE L2 -867 2447 2154 1473 154 63 75 chr1 6510130 6510462 -275683202 + L1MA9 LINE L1 5980 6307 -5 2378 146 90 19 chr1 6510982 6511198 -275682466 + L1MB3 LINE L1 5683 5882 -301 2237 102 0 32 chr1 6511198 6511512 -275682152 + AluSx SINE Alu 1 304 -8 2378 146 90 19 chr1 6511512 6511761 -275681903 + L1MB3 LINE L1 5882 6181 -2 2036 120 31 0 chr1 6512215 6512506 -275681158 + AluSx SINE Alu 1 300 -12 2215 125 0 6 chr1 6512531 6512843 -275680821 - AluSx SINE Alu -2 310 1 320 332 129 22 chr1 6512935 6513206 -275680458 + L1ME4a LINE L1 4762 5061 -1085 420 284 76 42 chr1 6513386 6513650 -275680014 + L1ME4a LINE L1 5284 5556 -2252 1797 165 7 3 chr1 6513660 6513963 -275679701 - AluJo SINE Alu -8 304 1 303 282 134 76 chr1 6514037 6514431 -275679233 + L1ME4a LINE L1 5693 6109 -12 270 0 0 0 chr1 6514998 6515028 -275678636 + (CCA)n Simple_repeat Simple_repeat 3 32 0 589 190 58 16 chr1 6515422 6515543 -275678121 - L2 LINE L2 0 3313 3188 335 263 113 8 chr1 6515667 6515800 -275677864 + L2 LINE L2 3167 3313 0 552 325 73 34 chr1 6516106 6516786 -275676878 + L2 LINE L2 2412 3117 -196 228 143 0 24 chr1 6516869 6516911 -275676753 + (TCCA)n Simple_repeat Simple_repeat 1 41 0 221 239 42 42 chr1 6516912 6516983 -275676681 + L2 LINE L2 3184 3254 -18 * 234 439 46 0 chr1 6516980 6517110 -275676554 + L2 LINE L2 3134 3269 -3 1565 245 21 89 chr1 6517261 6517789 -275675875 + LTR41 LTR ERVL 246 736 -37 2851 128 16 16 chr1 6517789 6518217 -275675447 + MSTA LTR MaLR 1 428 0 1565 245 21 89 chr1 6518217 6518247 -275675417 + LTR41 LTR ERVL 736 766 -7 1381 255 70 22 chr1 6518268 6518770 -275674894 - L1MDa LINE L1 -1794 4746 4221 441 258 97 0 chr1 6518786 6518910 -275674754 - L1MDa LINE L1 -3360 3180 3045 1150 174 36 101 chr1 6518961 6519237 -275674427 - Tigger3(Golem) DNA MER2_type -1 3028 2771 626 199 66 29 chr1 6519233 6519369 -275674295 - Tigger3(Golem) DNA MER2_type -2886 143 3 * 1087 275 98 38 chr1 6519402 6520253 -275673411 - L1MDa LINE L1 -3496 3044 2200 2379 237 98 40 chr1 6520418 6521186 -275672478 + MER21B LTR ERV1 1 812 -51 313 285 87 48 chr1 6521232 6521439 -275672225 - L1MDa LINE L1 -4695 1847 1633 2034 144 7 0 chr1 6521439 6521737 -275671927 - AluSx SINE Alu -12 300 1 960 148 0 0 chr1 6521737 6521872 -275671792 - AluSq/x SINE Alu -177 135 1 306 278 145 47 chr1 6521920 6522225 -275671439 - L1MDa LINE L1 -4928 1612 1298 251 253 116 11 chr1 6523311 6523406 -275670258 - L1 LINE L1 -1088 5058 4954 2270 122 0 0 chr1 6523412 6523716 -275669948 - AluSx SINE Alu -8 304 1 246 235 0 0 chr1 6524332 6524383 -275669281 + MER34 LTR ERV1 25 75 -467 283 242 114 40 chr1 6524643 6524792 -275668872 + MER34 LTR ERV1 368 527 -15 189 304 203 46 chr1 6524821 6525020 -275668644 + L2 LINE L2 2508 2674 -640 1286 210 80 25 chr1 6525020 6525306 -275668358 + AluJo SINE Alu 1 302 0 189 304 203 46 chr1 6525306 6525332 -275668332 + L2 LINE L2 2674 2695 -619 1802 145 24 27 chr1 6525332 6525458 -275668206 + AluSx SINE Alu 6 131 -181 2106 106 3 33 chr1 6525458 6525761 -275667903 + AluSg SINE Alu 1 294 -16 1802 145 24 27 chr1 6525761 6525930 -275667734 + AluSx SINE Alu 131 300 -12 189 304 203 46 chr1 6525930 6526009 -275667655 + L2 LINE L2 2695 2861 -453 1548 138 0 4 chr1 6526224 6526463 -275667201 + AluSx SINE Alu 61 298 -14 622 215 7 56 chr1 6526646 6526790 -275666874 + MER31B LTR ERV1 1 137 -329 2243 127 38 0 chr1 6527122 6527461 -275666203 + THE1B LTR MaLR 13 364 0 596 130 100 0 chr1 6527713 6527813 -275665851 - L1MB7 LINE L1 -6 6178 6069 2085 265 91 12 chr1 6527825 6528387 -275665277 + MLT2E LTR ERVL 21 626 -2 272 242 0 55 chr1 6528471 6528562 -275665102 - L1ME LINE L1 -306 5864 5779 1678 157 3 59 chr1 6528573 6528897 -275664767 - AluJb SINE Alu -6 306 1 937 244 97 15 chr1 6528908 6529446 -275664218 - L1ME3A LINE L1 -2 6160 5437 1494 121 0 0 chr1 6529508 6529707 -275663957 + AluSx SINE Alu 1 199 -113 185 298 60 36 chr1 6529931 6530015 -275663649 + L3 LINE CR1 1464 1549 -28 2289 104 0 13 chr1 6530333 6530649 -275663015 - AluSx SINE Alu 0 312 1 620 244 29 17 chr1 6530729 6530901 -275662763 - MER5B DNA MER1_type -2 176 3 443 329 59 5 chr1 6531663 6531894 -275661770 + L2 LINE L2 1727 1971 -1343 1918 210 30 48 chr1 6531904 6532403 -275661261 + MLT1D LTR MaLR 1 490 -15 1335 255 182 29 chr1 6532420 6533078 -275660586 + L2 LINE L2 1991 2547 -766 2316 82 7 0 chr1 6533078 6533369 -275660295 - AluSq SINE Alu -20 293 1 1335 255 182 29 chr1 6533369 6533847 -275659817 + L2 LINE L2 2547 3313 0 2305 95 10 3 chr1 6533880 6534186 -275659478 - AluSg SINE Alu -2 308 1 1286 164 56 0 chr1 6534230 6534498 -275659166 + AluJo SINE Alu 1 283 -29 288 264 0 66 chr1 6535255 6535361 -275658303 - L2 LINE L2 -88 3225 3127 21 57 0 0 chr1 6535469 6535504 -275658160 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr1 6535566 6535587 -275658077 + AT_rich Low_complexity Low_complexity 1 21 0 2184 64 13 60 chr1 6536017 6536331 -275657333 + AluY SINE Alu 2 300 -11 273 196 0 0 chr1 6536642 6536698 -275656966 + (CA)n Simple_repeat Simple_repeat 1 56 0 273 210 0 0 chr1 6537171 6537233 -275656431 + (TAGG)n Simple_repeat Simple_repeat 2 63 0 867 146 7 0 chr1 6537655 6537799 -275655865 + MER5A DNA MER1_type 44 188 -1 510 138 0 12 chr1 6538250 6538330 -275655334 + L1MB7 LINE L1 6040 6118 -66 1744 154 10 20 chr1 6538341 6538634 -275655030 + AluJo SINE Alu 9 298 -14 185 95 0 48 chr1 6538983 6539025 -275654639 + (TAAAAA)n Simple_repeat Simple_repeat 1 40 0 26 0 0 0 chr1 6539025 6539051 -275654613 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr1 6539100 6539130 -275654534 + AT_rich Low_complexity Low_complexity 1 30 0 294 292 73 0 chr1 6539255 6539351 -275654313 - MIR SINE MIR -86 122 20 285 268 49 12 chr1 6539933 6540015 -275653649 - L2 LINE L2 -1 3312 3228 207 0 0 0 chr1 6540229 6540252 -275653412 + (CTG)n Simple_repeat Simple_repeat 1 23 0 1754 169 30 7 chr1 6540897 6541192 -275652472 + AluJb SINE Alu 3 304 -8 23 0 0 0 chr1 6541220 6541243 -275652421 + AT_rich Low_complexity Low_complexity 1 23 0 2450 87 0 0 chr1 6542154 6542465 -275651199 + AluY SINE Alu 1 311 0 575 183 15 44 chr1 6542484 6542621 -275651043 + L1ME1 LINE L1 6029 6161 -5 2325 91 3 0 chr1 6542629 6542925 -275650739 + AluSx SINE Alu 1 297 -15 2386 75 0 25 chr1 6542928 6543247 -275650417 + AluY SINE Alu 1 311 0 637 302 36 18 chr1 6543507 6543732 -275649932 + MIR SINE MIR 28 256 -6 2094 128 0 19 chr1 6544069 6544381 -275649283 + AluSx SINE Alu 1 306 -6 200 336 119 0 chr1 6544543 6544677 -275648987 + MIR SINE MIR 105 254 -8 2490 82 0 0 chr1 6544682 6544985 -275648679 + AluSc SINE Alu 1 303 -6 242 201 69 90 chr1 6546231 6546375 -275647289 + Charlie7 DNA MER1_type 2429 2569 -43 408 262 112 15 chr1 6549201 6549350 -275644314 + MIR3 SINE MIR 11 181 -27 405 39 0 0 chr1 6550426 6550477 -275643187 + (TG)n Simple_repeat Simple_repeat 1 51 0 541 239 114 22 chr1 6552483 6552667 -275640997 - MIR SINE MIR -10 252 52 303 195 149 15 chr1 6552858 6552947 -275640717 - MIR SINE MIR -90 118 34 1712 213 79 14 chr1 6553129 6553561 -275640103 + L1MC4 LINE L1 7434 7893 -149 877 190 0 39 chr1 6554155 6554334 -275639330 + FRAM SINE Alu 2 173 -3 1733 177 0 7 chr1 6554339 6554621 -275639043 + AluJb SINE Alu 9 288 -24 25 0 0 0 chr1 6554621 6554646 -275639018 + AT_rich Low_complexity Low_complexity 1 25 0 276 209 189 3 chr1 6554651 6554753 -275638911 + MIR SINE MIR 62 187 -21 2244 120 0 0 chr1 6554905 6555214 -275638450 - AluSx SINE Alu 0 312 4 953 209 6 0 chr1 6555475 6555633 -275638031 + FRAM SINE Alu 1 159 -7 561 247 93 16 chr1 6556820 6557014 -275636650 - L2 LINE L2 -1 3312 3104 190 318 101 47 chr1 6557070 6557134 -275636530 + MIR3 SINE MIR 10 69 -139 802 184 133 6 chr1 6557134 6557292 -275636372 + MER5B DNA MER1_type 1 178 0 190 318 101 47 chr1 6557292 6557356 -275636308 + MIR3 SINE MIR 69 145 -63 424 224 51 0 chr1 6557430 6557528 -275636136 - MER5A DNA MER1_type -83 106 4 1893 165 3 0 chr1 6557768 6558065 -275635599 + AluJo SINE Alu 1 298 -14 646 272 163 20 chr1 6558653 6559002 -275634662 - MLT1J2 LTR MaLR -51 399 1 216 326 22 33 chr1 6559195 6559287 -275634377 + L2 LINE L2 3223 3313 0 1044 121 0 36 chr1 6559493 6559659 -275634005 + FRAM SINE Alu 8 167 -9 212 152 76 0 chr1 6559869 6559935 -275633729 + (TTAA)n Simple_repeat Simple_repeat 4 74 0 203 301 119 42 chr1 6560873 6561016 -275632648 - MIR SINE MIR -50 212 59 198 245 38 0 chr1 6562031 6562084 -275631580 - MIR SINE MIR -50 212 158 1412 246 128 33 chr1 6562400 6562458 -275631206 + MLT1E LTR MaLR 2 53 -540 2373 66 7 0 chr1 6562458 6562747 -275630917 - AluY SINE Alu -20 291 1 1412 246 128 33 chr1 6562747 6563229 -275630435 + MLT1E LTR MaLR 53 593 0 202 340 98 12 chr1 6563381 6563625 -275630039 + L2 LINE L2 1912 2176 -1138 315 184 19 48 chr1 6563716 6563819 -275629845 + LTR33 LTR ERVL 19 118 -403 2461 99 0 0 chr1 6563945 6564257 -275629407 + AluSq SINE Alu 1 312 -1 220 242 208 17 chr1 6564283 6564403 -275629261 + L2 LINE L2 2368 2510 -804 207 0 0 0 chr1 6564521 6564544 -275629120 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 218 296 156 15 chr1 6565171 6565306 -275628358 + L2 LINE L2 2906 3059 -213 2126 71 0 11 chr1 6565534 6565800 -275627864 - AluSc SINE Alu -12 297 35 300 202 394 0 chr1 6566232 6566331 -275627333 + L2 LINE L2 3134 3271 -1 21 36 0 0 chr1 6566415 6566443 -275627221 + AT_rich Low_complexity Low_complexity 1 28 0 3267 180 7 25 chr1 6566820 6567463 -275626201 + L1ME1 LINE L1 4560 5192 -954 1489 199 7 20 chr1 6567463 6567760 -275625904 + AluJb SINE Alu 1 293 -19 3267 180 7 25 chr1 6567760 6567793 -275625871 + L1ME1 LINE L1 5192 5224 -922 3403 199 15 71 chr1 6567816 6568418 -275625246 + L1ME1 LINE L1 5224 5738 -428 824 120 17 8 chr1 6568418 6568535 -275625129 + FLAM_C SINE Alu 1 118 -15 3403 199 15 71 chr1 6568535 6568933 -275624731 + L1ME1 LINE L1 5738 6157 -9 1571 175 0 92 chr1 6568955 6569096 -275624568 + AluJo SINE Alu 1 153 -159 1971 91 18 14 chr1 6569096 6569372 -275624292 - AluSq SINE Alu -36 277 1 1571 175 0 92 chr1 6569372 6569568 -275624096 + AluJo SINE Alu 153 307 -5 1813 146 0 45 chr1 6570224 6570532 -275623132 + AluJb SINE Alu 1 294 -18 615 159 62 0 chr1 6571591 6571704 -275621960 - L1MB3 LINE L1 0 6183 6064 1941 143 0 16 chr1 6572843 6573150 -275620514 - AluJo SINE Alu -10 302 1 1017 132 86 17 chr1 6573398 6573572 -275620092 + MER44D DNA MER2_type 1 456 -153 221 286 0 32 chr1 6573592 6573655 -275620009 - L3 LINE CR1 -21 1556 1496 1603 166 32 11 chr1 6573904 6574187 -275619477 + AluJo SINE Alu 1 289 -23 27 62 0 0 chr1 6574187 6574235 -275619429 + AT_rich Low_complexity Low_complexity 1 48 0 2655 33 0 0 chr1 6574385 6574688 -275618976 + AluYb8 SINE Alu 9 311 -7 955 133 106 0 chr1 6574688 6574839 -275618825 + AluY SINE Alu 133 299 -12 2052 117 31 0 chr1 6574985 6575276 -275618388 + AluSq SINE Alu 1 300 -13 33 43 0 0 chr1 6575309 6575356 -275618308 + AT_rich Low_complexity Low_complexity 1 47 0 2217 108 0 22 chr1 6575589 6575904 -275617760 + AluSx SINE Alu 4 311 -1 1680 167 39 0 chr1 6575912 6576193 -275617471 + AluJb SINE Alu 1 292 -20 1893 137 29 13 chr1 6576836 6577143 -275616521 + AluJb SINE Alu 1 312 0 1650 174 0 27 chr1 6577778 6578077 -275615587 + AluJo SINE Alu 1 291 -21 207 125 0 0 chr1 6578348 6578388 -275615276 + (A)n Simple_repeat Simple_repeat 1 40 0 2035 109 48 14 chr1 6581011 6581305 -275612359 + AluSx SINE Alu 1 304 -8 23 0 0 0 chr1 6582133 6582156 -275611508 + AT_rich Low_complexity Low_complexity 1 23 0 306 0 0 0 chr1 6582859 6582893 -275610771 + (CA)n Simple_repeat Simple_repeat 2 35 0 2212 105 3 59 chr1 6583140 6583464 -275610200 + AluSx SINE Alu 1 306 -6 253 235 0 0 chr1 6583539 6583590 -275610074 + L2 LINE L2 3220 3270 -2 273 57 0 0 chr1 6585075 6585110 -275608554 + (GGGA)n Simple_repeat Simple_repeat 3 37 0 22 35 0 0 chr1 6588406 6588435 -275605229 + GC_rich Low_complexity Low_complexity 1 29 0 947 262 24 31 chr1 6589319 6589659 -275604005 + L1MC4a LINE L1 5480 5806 -315 2071 144 0 3 chr1 6589778 6590076 -275603588 + AluSq SINE Alu 1 297 -16 2334 93 3 0 chr1 6590195 6590486 -275603178 - AluSp SINE Alu -21 292 1 983 188 96 50 chr1 6590743 6590780 -275602884 + Charlie1b DNA MER1_type 35 69 -2692 1825 168 7 0 chr1 6590780 6591065 -275602599 - AluJo SINE Alu -25 287 1 983 188 96 50 chr1 6591065 6591330 -275602334 + Charlie1b DNA MER1_type 69 351 -172 1147 168 96 0 chr1 6591330 6591538 -275602126 - AluJb SINE Alu -4 308 81 2225 83 4 0 chr1 6591540 6591816 -275601848 - AluSg SINE Alu -33 277 1 249 226 0 0 chr1 6591824 6591877 -275601787 + Charlie1b DNA MER1_type 471 523 0 2201 111 3 3 chr1 6592348 6592645 -275601019 + AluSg SINE Alu 1 297 -13 438 110 41 0 chr1 6592791 6592864 -275600800 - L1MD1 LINE L1 -14 6228 6153 2028 149 3 3 chr1 6593105 6593407 -275600257 + AluSx SINE Alu 1 302 -10 2179 104 0 35 chr1 6593891 6594209 -275599455 - AluSc SINE Alu -1 308 2 370 301 100 48 chr1 6594818 6594854 -275598810 + L1MC4a LINE L1 5793 5826 -1982 1787 133 26 48 chr1 6594854 6595163 -275598501 + AluSx SINE Alu 1 302 -10 370 301 100 48 chr1 6595163 6595375 -275598289 + L1MC4a LINE L1 5826 6054 -1754 959 255 120 32 chr1 6595416 6595636 -275598028 - L2 LINE L2 0 3313 3114 2472 90 3 3 chr1 6595636 6595948 -275597716 - AluSx SINE Alu 0 312 1 959 255 120 32 chr1 6595948 6596341 -275597323 - L2 LINE L2 -199 3114 2578 1721 182 95 52 chr1 6596341 6596710 -275596954 - MLT1D LTR MaLR -1 504 108 1882 156 0 0 chr1 6596710 6596985 -275596679 - AluSx SINE Alu -37 275 1 1721 182 95 52 chr1 6596985 6597098 -275596566 - MLT1D LTR MaLR -397 108 1 747 148 6 119 chr1 6597107 6597283 -275596381 - MER58A DNA MER1_type -22 202 47 1105 238 52 58 chr1 6597292 6597692 -275595972 - L2 LINE L2 -725 2589 2192 1766 156 61 10 chr1 6597907 6598202 -275595462 - AluJb SINE Alu -2 310 1 1122 82 0 0 chr1 6598202 6598337 -275595327 - AluSq/x SINE Alu -177 135 1 1220 135 0 11 chr1 6598351 6598536 -275595128 + FRAM SINE Alu 1 176 0 981 199 38 9 chr1 6598536 6598747 -275594917 + MLT1A2 LTR MaLR 158 374 0 1036 203 31 8 chr1 6598995 6599251 -275594413 - MER44D DNA MER2_type 0 605 289 549 236 159 13 chr1 6602995 6603152 -275590512 - MER5A DNA MER1_type -6 183 4 2967 63 15 5 chr1 6603335 6603732 -275589932 + MLT2A1 LTR ERVL 1 401 -43 243 109 16 31 chr1 6603732 6603796 -275589868 + (TA)n Simple_repeat Simple_repeat 1 63 0 1247 96 0 12 chr1 6604097 6604264 -275589400 + AluSp SINE Alu 149 313 0 633 237 37 93 chr1 6604787 6604851 -275588813 + MIR SINE MIR 47 113 -149 1920 161 3 3 chr1 6604851 6605155 -275588509 - AluJb SINE Alu -2 310 7 633 237 37 93 chr1 6605155 6605305 -275588359 + MIR SINE MIR 113 249 -13 1491 108 45 9 chr1 6605305 6605422 -275588242 + MER30 DNA MER1_type 1 112 -118 2217 119 7 0 chr1 6605422 6605716 -275587948 + AluSx SINE Alu 1 296 -16 1491 108 45 9 chr1 6605716 6605820 -275587844 + MER30 DNA MER1_type 112 230 0 228 35 0 0 chr1 6606015 6606044 -275587620 + (TA)n Simple_repeat Simple_repeat 1 29 0 229 56 111 0 chr1 6606044 6606080 -275587584 + MLT2A1 LTR ERVL 405 444 0 339 302 95 9 chr1 6606185 6606301 -275587363 + MIR3 SINE MIR 12 137 -71 2065 188 26 75 chr1 6606313 6606406 -275587258 + MLT1D LTR MaLR 1 97 -408 2346 116 3 0 chr1 6606406 6606717 -275586947 - AluSx SINE Alu 0 312 1 2065 188 26 75 chr1 6606717 6607154 -275586510 + MLT1D LTR MaLR 97 505 0 1923 128 52 3 chr1 6607198 6607486 -275586178 + AluSq SINE Alu 9 310 -3 396 0 0 0 chr1 6607946 6607990 -275585674 + (CA)n Simple_repeat Simple_repeat 1 44 0 760 189 0 24 chr1 6608002 6608129 -275585535 + FLAM_C SINE Alu 2 125 -18 4564 23 0 0 chr1 6608287 6608785 -275584879 + SVA Other Other 897 1394 0 25 0 0 0 chr1 6608785 6608810 -275584854 + AT_rich Low_complexity Low_complexity 1 25 0 2430 61 0 0 chr1 6608825 6609125 -275584539 + AluY SINE Alu 1 300 0 409 195 34 119 chr1 6609126 6609165 -275584499 - Tigger7 DNA MER2_type -594 111 70 1749 201 3 0 chr1 6609165 6609463 -275584201 - AluJo SINE Alu -13 299 1 409 195 34 119 chr1 6609463 6609541 -275584123 - Tigger7 DNA MER2_type -635 70 4 2200 126 10 0 chr1 6609676 6609985 -275583679 - AluSx SINE Alu 0 312 1 2574 47 0 3 chr1 6609995 6610294 -275583370 - AluY SINE Alu -13 298 1 384 284 13 52 chr1 6610417 6610572 -275583092 + HAL1 LINE L1 39 187 -2320 231 202 111 40 chr1 6610641 6610740 -275582924 + HAL1 LINE L1 349 454 -2053 513 263 145 63 chr1 6611219 6611429 -275582235 - HAL1 LINE L1 -428 2079 1831 1796 172 0 23 chr1 6611429 6611731 -275581933 - AluJo SINE Alu -17 295 1 513 263 145 63 chr1 6611731 6611851 -275581813 - HAL1 LINE L1 -676 1831 1722 2277 82 10 13 chr1 6612680 6612984 -275580680 + AluSq SINE Alu 1 303 -10 1793 150 56 3 chr1 6613009 6613295 -275580369 - AluSx SINE Alu -11 301 1 2424 89 0 3 chr1 6613579 6613883 -275579781 + AluSx SINE Alu 1 303 -9 217 262 49 0 chr1 6614450 6614511 -275579153 - MIR SINE MIR -99 109 46 1549 212 7 13 chr1 6614552 6614854 -275578810 + AluJo SINE Alu 1 300 -12 238 276 67 29 chr1 6614904 6615009 -275578655 + L2 LINE L2 2697 2805 -509 2284 105 0 29 chr1 6615022 6615337 -275578327 - AluSg SINE Alu -4 306 1 198 303 50 67 chr1 6615337 6615456 -275578208 - MIR SINE MIR -113 149 33 1353 180 12 16 chr1 6615667 6615917 -275577747 + AluJo SINE Alu 50 298 -14 213 307 88 44 chr1 6616327 6616464 -275577200 - L2 LINE L2 -62 3210 3068 1918 124 47 0 chr1 6616497 6616771 -275576893 - AluSx SINE Alu -25 287 1 942 130 0 0 chr1 6616814 6616968 -275576696 + (TG)n Simple_repeat Simple_repeat 1 154 0 370 185 23 108 chr1 6617324 6617402 -275576262 - MER45A DNA AcHobo -1405 176 112 1744 162 7 10 chr1 6617402 6617692 -275575972 + AluJo SINE Alu 12 300 -12 370 185 23 108 chr1 6617692 6617743 -275575921 - MER45A DNA AcHobo -1469 112 58 322 223 64 0 chr1 6617871 6617965 -275575699 - MLT1L LTR MaLR -13 602 503 2315 105 3 10 chr1 6618588 6618902 -275574762 + AluSx SINE Alu 1 312 0 1020 112 0 87 chr1 6618996 6619023 -275574641 + L1PA16 LINE L1 5806 5834 -332 1619 116 39 4 chr1 6619023 6619256 -275574408 - AluSx SINE Alu -14 298 58 1020 112 0 87 chr1 6619256 6619424 -275574240 + L1PA16 LINE L1 5834 5984 -182 1562 154 65 31 chr1 6619424 6619716 -275573948 + AluJo SINE Alu 1 302 -10 1117 116 15 30 chr1 6619745 6619943 -275573721 + L1PA16 LINE L1 5971 6165 -1 2659 32 3 13 chr1 6620329 6620643 -275573021 - AluY SINE Alu 0 311 1 416 182 0 0 chr1 6621584 6621650 -275572014 + AluJ/FLAM SINE Alu 13 78 -234 1682 107 0 21 chr1 6621685 6621919 -275571745 - AluSx SINE Alu -83 229 1 736 129 0 0 chr1 6621919 6622020 -275571644 + AluSg/x SINE Alu 186 286 -23 961 240 81 3 chr1 6622060 6622129 -275571535 + L1M4 LINE L1 3437 3499 -2647 390 21 0 0 chr1 6622129 6622176 -275571488 + (CA)n Simple_repeat Simple_repeat 2 48 0 961 240 81 3 chr1 6622176 6622414 -275571250 + L1M4 LINE L1 3499 3768 -2378 2344 109 0 0 chr1 6622465 6622777 -275570887 + AluSx SINE Alu 1 312 0 1887 156 0 22 chr1 6622787 6623101 -275570563 + AluJo SINE Alu 5 311 -1 386 160 117 0 chr1 6623113 6623207 -275570457 + L1M4 LINE L1 4495 4599 -1547 524 131 20 20 chr1 6623207 6623306 -275570358 - LTR24B LTR ERV1 -440 136 38 1109 192 28 17 chr1 6623311 6623602 -275570062 + L1M4 LINE L1 5008 5301 -845 1598 115 0 25 chr1 6623758 6623993 -275569671 - AluSx SINE Alu -83 229 1 1075 105 0 0 chr1 6623993 6624126 -275569538 - AluSg SINE Alu -177 133 1 270 0 0 0 chr1 6624299 6624329 -275569335 + (TG)n Simple_repeat Simple_repeat 1 30 0 939 170 0 0 chr1 6624334 6624475 -275569189 - FRAM SINE Alu -32 144 4 2464 58 0 3 chr1 6624787 6625155 -275568509 + AluY SINE Alu 1 311 0 1930 152 7 0 chr1 6625680 6625989 -275567675 - AluJb SINE Alu -1 311 1 900 104 49 0 chr1 6625989 6626133 -275567531 - MLT1B LTR MaLR -211 179 29 246 185 56 19 chr1 6626177 6626285 -275567379 + (TA)n Simple_repeat Simple_repeat 1 112 0 34 24 0 0 chr1 6627529 6627570 -275566094 + AT_rich Low_complexity Low_complexity 1 41 0 348 149 0 15 chr1 6628091 6628158 -275565506 - MLT1B LTR MaLR -1 389 324 1457 138 29 72 chr1 6628163 6628439 -275565225 + AluJb SINE Alu 5 268 -44 328 232 58 14 chr1 6628445 6628514 -275565150 + L1MC4 LINE L1 6632 6703 -1339 649 200 4 109 chr1 6628632 6628862 -275564802 + L1MB7 LINE L1 5968 6173 -11 1414 135 38 4 chr1 6628988 6629225 -275564439 - THE1C LTR MaLR 0 375 131 334 161 0 0 chr1 6629222 6629278 -275564386 + AluJb SINE Alu 247 302 0 * 368 125 16 0 chr1 6629284 6629348 -275564316 + GA-rich Low_complexity Low_complexity 3 67 0 348 154 0 0 chr1 6629350 6629402 -275564262 + Alu SINE Alu 238 289 -13 * 528 134 67 148 chr1 6629388 6629537 -275564127 - THE1C LTR MaLR -238 137 1 3449 130 29 4 chr1 6629692 6630247 -275563417 - LTR24B LTR ERV1 -7 569 1 2181 117 0 7 chr1 6630305 6630604 -275563060 - AluSx SINE Alu -15 297 1 1892 164 0 19 chr1 6631864 6632175 -275561489 - AluJo SINE Alu -7 305 1 2309 89 7 0 chr1 6632198 6632489 -275561175 - AluSx SINE Alu -17 295 3 1679 126 28 82 chr1 6632520 6632821 -275560843 + L1MB3 LINE L1 5840 6121 -62 2246 94 3 0 chr1 6632821 6633109 -275560555 + AluSp SINE Alu 6 294 -19 1679 126 28 82 chr1 6633109 6633163 -275560501 + L1MB3 LINE L1 6121 6176 -7 1979 158 3 3 chr1 6633178 6633481 -275560183 + AluJb SINE Alu 1 303 -9 2199 92 20 7 chr1 6633481 6633774 -275559890 + AluSx SINE Alu 1 297 -15 277 81 0 0 chr1 6633774 6633811 -275559853 - MLT1B LTR MaLR -232 158 122 1205 143 0 6 chr1 6633815 6633990 -275559674 - AluSq SINE Alu -7 306 133 550 122 61 43 chr1 6633991 6634106 -275559558 - MLT1B LTR MaLR -273 117 1 938 196 13 70 chr1 6634172 6634402 -275559262 - MER20 DNA MER1_type -2 217 1 1073 308 68 75 chr1 6634545 6634641 -275559023 - L2 LINE L2 -1 3312 3217 2215 106 3 37 chr1 6634641 6634963 -275558701 - AluSx SINE Alu -1 311 1 1073 308 68 75 chr1 6634963 6635145 -275558519 - L2 LINE L2 -96 3217 3035 1617 118 0 0 chr1 6635145 6635366 -275558298 - AluSg/x SINE Alu -15 295 75 1073 308 68 75 chr1 6635366 6636064 -275557600 - L2 LINE L2 -278 3035 2359 612 194 8 8 chr1 6636074 6636203 -275557461 - L1MB3 LINE L1 0 6183 6055 2159 114 3 3 chr1 6636285 6636582 -275557082 + AluSx SINE Alu 1 297 -15 382 264 91 0 chr1 6636584 6636705 -275556959 - MER94 DNA DNA 0 134 3 2515 112 117 5 chr1 6637544 6637929 -275555735 + MSTA LTR MaLR 1 428 0 1230 217 110 35 chr1 6638177 6638606 -275555058 - MLT1C LTR MaLR -1 466 6 2071 71 26 15 chr1 6638659 6638927 -275554737 + AluSg SINE Alu 35 305 -5 866 175 0 138 chr1 6639396 6639534 -275554130 + AluSx SINE Alu 1 92 -220 2357 112 0 0 chr1 6639534 6639846 -275553818 + AluSx SINE Alu 1 312 0 866 175 0 138 chr1 6639846 6639953 -275553711 + AluSx SINE Alu 92 212 -100 28 0 0 0 chr1 6639990 6640018 -275553646 + AT_rich Low_complexity Low_complexity 1 28 0 1971 141 13 13 chr1 6640618 6640924 -275552740 + AluJo SINE Alu 3 308 -4 1080 71 0 57 chr1 6641014 6641155 -275552509 + AluSq/x SINE Alu 1 133 -179 2217 96 0 4 chr1 6641165 6641445 -275552219 + AluSg SINE Alu 1 279 -31 1061 145 6 17 chr1 6642063 6642235 -275551429 - FRAM SINE Alu -6 170 1 2140 96 0 31 chr1 6642247 6642428 -275551236 - AluSx SINE Alu 0 307 137 2760 32 0 10 chr1 6642428 6642742 -275550922 - AluY SINE Alu 0 311 1 2140 96 0 31 chr1 6642742 6642872 -275550792 - AluSx SINE Alu -170 137 5 302 268 107 0 chr1 6642985 6643097 -275550567 + L2 LINE L2 3190 3313 0 978 171 0 0 chr1 6643172 6643324 -275550340 + FRAM SINE Alu 2 153 -23 31 44 0 0 chr1 6643324 6643369 -275550295 + AT_rich Low_complexity Low_complexity 1 45 0 696 192 0 0 chr1 6643388 6643513 -275550151 - MLT1B LTR MaLR 0 390 266 2185 113 7 3 chr1 6643530 6643840 -275549824 - AluSq SINE Alu -2 311 1 235 315 95 0 chr1 6644102 6644211 -275549453 + MIR SINE MIR 59 179 -29 207 0 0 0 chr1 6644575 6644598 -275549066 + (A)n Simple_repeat Simple_repeat 1 23 0 1754 186 0 38 chr1 6644713 6645030 -275548634 + AluJo SINE Alu 1 305 -7 2220 96 27 7 chr1 6645261 6645553 -275548111 + AluSx SINE Alu 1 298 -14 2202 119 0 0 chr1 6645564 6645857 -275547807 + AluSx SINE Alu 1 293 -19 226 274 65 65 chr1 6646228 6646381 -275547283 - L2 LINE L2 0 3313 3161 500 290 6 33 chr1 6646454 6646544 -275547120 + MIR SINE MIR 14 98 -164 2326 119 129 5 chr1 6646544 6646923 -275546741 - MSTA LTR MaLR -2 426 1 500 290 6 33 chr1 6646923 6647015 -275546649 + MIR SINE MIR 98 191 -71 3888 171 12 34 chr1 6647433 6647480 -275546184 + L1MB3 LINE L1 5445 5491 -692 1959 109 64 7 chr1 6647480 6647763 -275545901 + AluSx SINE Alu 1 299 -13 3888 171 12 34 chr1 6647763 6648175 -275545489 + L1MB3 LINE L1 5491 5884 -299 1775 146 56 3 chr1 6648175 6648463 -275545201 + AluSq SINE Alu 2 304 -9 3888 171 12 34 chr1 6648463 6648749 -275544915 + L1MB3 LINE L1 5884 6175 -8 1954 147 13 7 chr1 6648846 6649153 -275544511 + AluJb SINE Alu 1 309 -3 503 168 30 59 chr1 6649435 6649536 -275544128 + AluJo/FLAM SINE Alu 30 127 -185 2363 81 0 26 chr1 6649536 6649844 -275543820 + AluY SINE Alu 1 300 -11 474 158 0 13 chr1 6650368 6650444 -275543220 + MER5A DNA MER1_type 1 75 -114 2310 104 3 3 chr1 6650444 6650743 -275542921 + AluSx SINE Alu 1 299 -13 873 154 8 0 chr1 6650757 6650887 -275542777 + FLAM_C SINE Alu 5 135 -8 2560 75 3 0 chr1 6651311 6651619 -275542045 - AluSp SINE Alu -4 309 1 1761 151 6 58 chr1 6651621 6651786 -275541878 - AluJb SINE Alu -16 296 124 240 35 0 0 chr1 6651786 6651815 -275541849 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 1943 134 4 7 chr1 6651817 6652094 -275541570 - AluSx SINE Alu -29 283 8 1761 151 6 58 chr1 6652094 6652237 -275541427 - AluJb SINE Alu -189 123 1 2382 94 3 0 chr1 6652425 6652723 -275540941 - AluSx SINE Alu -13 299 1 1649 183 0 24 chr1 6652811 6652976 -275540688 - AluJo SINE Alu -14 298 142 2717 36 0 0 chr1 6652976 6653277 -275540387 - AluY SINE Alu -10 301 1 1649 183 0 24 chr1 6653277 6653406 -275540258 - AluJo SINE Alu -170 142 11 728 199 22 7 chr1 6653407 6653543 -275540121 - AluJo SINE Alu -173 139 2 2103 100 3 3 chr1 6653882 6654181 -275539483 + AluSx SINE Alu 1 299 -13 644 167 17 8 chr1 6654281 6654401 -275539263 + MER101 LTR ERV1 354 474 0 * 806 178 67 54 chr1 6654401 6654806 -275538858 + Charlie1 DNA MER1_type 175 2739 -22 263 170 38 0 chr1 6654875 6654928 -275538736 + Charlie1 DNA MER1_type 2707 2761 0 * 888 266 110 30 chr1 6654928 6655290 -275538374 - MLT1I LTR MaLR -16 393 3 2600 53 0 3 chr1 6655907 6656208 -275537456 - AluY SINE Alu -11 300 1 471 256 64 8 chr1 6657425 6657550 -275536114 - L2 LINE L2 -4 3268 3137 229 377 91 32 chr1 6657592 6657966 -275535698 - L2 LINE L2 -502 2812 2417 2029 84 55 4 chr1 6658067 6658341 -275535323 + AluSp SINE Alu 11 298 -15 309 294 69 0 chr1 6658521 6658623 -275535041 - MIR SINE MIR -66 196 88 291 311 198 6 chr1 6658885 6659052 -275534612 - MIR SINE MIR -43 219 21 1751 59 0 0 chr1 6659196 6659398 -275534266 + AluY SINE Alu 3 204 -107 2445 93 0 0 chr1 6661161 6661463 -275532201 - AluSp SINE Alu -11 302 1 2046 126 7 27 chr1 6661465 6661766 -275531898 - AluSx SINE Alu -17 295 1 2210 120 0 10 chr1 6661925 6662234 -275531430 - AluSg SINE Alu -4 306 1 23 0 0 0 chr1 6662234 6662257 -275531407 + AT_rich Low_complexity Low_complexity 1 23 0 628 198 0 0 chr1 6662270 6662371 -275531293 - FRAM SINE Alu -24 152 52 797 157 119 27 chr1 6662371 6662387 -275531277 + LTR36 LTR ERV1 3 16 -595 2176 119 13 3 chr1 6662387 6662690 -275530974 - AluSx SINE Alu -6 306 1 797 157 119 27 chr1 6662690 6662858 -275530806 + LTR36 LTR ERV1 16 204 -407 822 234 172 7 chr1 6662892 6663165 -275530499 + LTR36 LTR ERV1 294 611 0 21 0 0 0 chr1 6663216 6663237 -275530427 + AT_rich Low_complexity Low_complexity 1 21 0 2439 64 0 32 chr1 6663237 6663549 -275530115 + AluY SINE Alu 1 302 -9 1285 81 12 0 chr1 6663551 6663712 -275529952 + AluY SINE Alu 135 297 -14 760 158 0 47 chr1 6663712 6663839 -275529825 - AluJo/FLAM SINE Alu -181 131 11 180 298 35 114 chr1 6663899 6664058 -275529606 - MIR SINE MIR 0 262 129 2211 116 0 20 chr1 6664058 6664361 -275529303 + AluSg SINE Alu 1 297 -13 180 298 35 114 chr1 6664361 6664456 -275529208 - MIR SINE MIR -133 129 28 244 336 79 14 chr1 6664489 6664614 -275529050 - MIR SINE MIR -61 147 33 1800 123 38 131 chr1 6665861 6666228 -275527436 - MER1B DNA MER1_type -4 333 1 2330 43 54 0 chr1 6666346 6666625 -275527039 - AluY SINE Alu -17 294 1 1750 115 4 8 chr1 6667196 6667440 -275526224 + AluSq SINE Alu 1 243 -70 241 200 40 0 chr1 6667442 6667492 -275526172 + L2 LINE L2 2984 3035 -278 1847 157 23 7 chr1 6667492 6667797 -275525867 - AluJo SINE Alu -2 310 1 941 165 18 29 chr1 6667807 6667977 -275525687 - FRAM SINE Alu -8 168 1 635 246 68 85 chr1 6667977 6668040 -275525624 + L2 LINE L2 3020 3083 -230 1944 161 0 3 chr1 6668040 6668339 -275525325 + AluJo SINE Alu 1 298 -14 635 246 68 85 chr1 6668339 6668568 -275525096 + L2 LINE L2 3083 3307 -6 439 186 74 147 chr1 6668716 6669050 -275524614 + LTR37B LTR ERV1 118 459 -9 2276 84 7 0 chr1 6669059 6669345 -275524319 + AluSg SINE Alu 1 288 -22 1511 161 0 29 chr1 6669445 6669718 -275523946 + AluJo SINE Alu 44 308 -4 2232 103 7 3 chr1 6670109 6670409 -275523255 - AluSg SINE Alu -9 301 1 2180 122 0 10 chr1 6670436 6670727 -275522937 + AluSx SINE Alu 1 290 -22 225 0 0 0 chr1 6670727 6670752 -275522912 + (TAGA)n Simple_repeat Simple_repeat 4 28 0 2180 122 0 10 chr1 6670752 6670764 -275522900 + AluSx SINE Alu 290 301 -11 2646 55 0 0 chr1 6670967 6671274 -275522390 + AluY SINE Alu 1 307 -4 21 0 0 0 chr1 6672723 6672744 -275520920 + GC_rich Low_complexity Low_complexity 1 21 0 227 188 0 14 chr1 6672876 6672945 -275520719 + (CCCGAA)n Simple_repeat Simple_repeat 3 70 0 2316 97 0 10 chr1 6673267 6673576 -275520088 - AluSc SINE Alu -1 308 3 362 269 161 47 chr1 6673618 6673811 -275519853 - MIR SINE MIR -12 250 36 2318 111 0 0 chr1 6674026 6674324 -275519340 + AluSx SINE Alu 1 298 -14 212 262 0 0 chr1 6674326 6674368 -275519296 + polypurine Low_complexity Low_complexity 5 46 0 910 181 165 0 chr1 6674368 6674550 -275519114 + AluSx SINE Alu 1 212 -100 650 140 0 0 chr1 6674555 6674648 -275519016 + AluSp SINE Alu 141 233 -80 197 33 33 0 chr1 6674659 6674689 -275518975 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 660 70 0 0 chr1 6674708 6674794 -275518870 + L1PA10 LINE L1 5805 5890 -278 313 81 6 0 chr1 6674794 6674852 -275518812 + Alu SINE Alu 1 40 -260 1407 138 73 19 chr1 6674852 6675079 -275518585 - L1PA11 LINE L1 -24 6150 5906 2528 58 0 13 chr1 6675079 6675388 -275518276 - AluY SINE Alu -6 305 1 1407 138 73 19 chr1 6675388 6675420 -275518244 - L1PA11 LINE L1 -268 5906 5877 2156 107 10 10 chr1 6675737 6676047 -275517617 + AluSx SINE Alu 1 310 -2 1633 177 38 3 chr1 6676316 6676604 -275517060 - AluJb SINE Alu -14 298 1 1940 253 196 25 chr1 6676710 6677774 -275515890 - L2 LINE L2 -787 2527 1283 310 310 31 0 chr1 6678091 6678220 -275515444 - HAL1 LINE L1 -873 1634 1502 1186 127 0 33 chr1 6678234 6678415 -275515249 - AluSg/x SINE Alu -1 309 135 216 320 13 13 chr1 6678823 6678901 -275514763 - L2 LINE L2 -773 2541 2464 225 94 0 0 chr1 6679637 6679669 -275513995 + (TG)n Simple_repeat Simple_repeat 2 33 0 1356 128 59 0 chr1 6679669 6679873 -275513791 - AluJo SINE Alu -27 285 70 1543 185 0 58 chr1 6679886 6680048 -275513616 - AluJo SINE Alu -17 295 158 2207 114 14 0 chr1 6680048 6680338 -275513326 - AluSx SINE Alu -18 294 1 1543 185 0 58 chr1 6680338 6680483 -275513181 - AluJo SINE Alu -154 158 6 716 219 7 0 chr1 6680526 6680687 -275512977 + FRAM SINE Alu 9 170 0 2291 78 14 0 chr1 6680689 6680984 -275512680 + AluY SINE Alu 3 301 -10 1846 159 21 0 chr1 6680984 6681273 -275512391 + AluJo SINE Alu 1 295 -17 1067 73 0 0 chr1 6681297 6681420 -275512244 + AluSq/x SINE Alu 13 135 -178 2282 100 0 0 chr1 6681420 6681711 -275511953 + AluY SINE Alu 1 291 -20 2188 100 7 13 chr1 6681714 6682013 -275511651 + AluY SINE Alu 1 297 -14 280 241 114 0 chr1 6682622 6682701 -275510963 - L1MD3 LINE L1 -93 7902 7815 2018 117 10 10 chr1 6682703 6682994 -275510670 + AluSx SINE Alu 9 299 -13 1193 140 6 0 chr1 6682994 6683165 -275510499 + AluSg/x SINE Alu 134 305 -7 239 200 0 0 chr1 6683167 6683212 -275510452 - L1MC4a LINE L1 -150 7658 7614 417 161 0 37 chr1 6683242 6683323 -275510341 - U6 snRNA snRNA -29 78 1 2006 135 3 14 chr1 6683335 6683632 -275510032 - AluSx SINE Alu -18 294 1 379 127 0 0 chr1 6683652 6683707 -275509957 + AluJb SINE Alu 94 148 -154 2568 73 0 0 chr1 6683755 6684058 -275509606 + AluYa5 SINE Alu 1 303 -8 967 90 0 0 chr1 6684060 6684182 -275509482 + AluSp/q SINE Alu 170 291 -22 3175 159 58 20 chr1 6684209 6684393 -275509271 - L1MB4 LINE L1 -172 6008 5832 1745 178 13 16 chr1 6684393 6684697 -275508967 + AluJb SINE Alu 1 303 -9 3175 159 58 20 chr1 6684697 6685167 -275508497 - L1MB4 LINE L1 -348 5832 5329 2127 123 38 0 chr1 6685183 6685476 -275508188 - AluSx SINE Alu -8 304 1 2053 84 49 21 chr1 6685482 6685769 -275507895 - AluSq SINE Alu -1 312 18 1222 101 6 22 chr1 6686041 6686059 -275507605 + AluSg/x SINE Alu 118 135 -177 2158 123 3 7 chr1 6686059 6686367 -275507297 + AluSx SINE Alu 1 307 -5 1222 101 6 22 chr1 6686367 6686521 -275507143 + AluSg/x SINE Alu 131 288 -20 237 33 0 0 chr1 6686521 6686551 -275507113 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 353 281 188 12 chr1 6687132 6687292 -275506372 + MIR SINE MIR 57 244 -18 2444 72 0 0 chr1 6687297 6687590 -275506074 - AluY SINE Alu -18 293 1 2437 87 3 0 chr1 6687943 6688242 -275505422 - AluSp SINE Alu -13 300 1 1473 210 4 0 chr1 6688289 6688541 -275505123 + AluJb SINE Alu 1 253 -59 1442 129 42 104 chr1 6688557 6688895 -275504769 + AluSx SINE Alu 1 312 0 660 70 0 0 chr1 6688905 6688991 -275504673 + L1PA10 LINE L1 5805 5890 -278 256 107 30 0 chr1 6688991 6689048 -275504616 + AluJb SINE Alu 117 170 -132 1311 143 82 4 chr1 6689048 6689292 -275504372 - L1PA11 LINE L1 -24 6150 5888 1236 150 0 0 chr1 6689415 6689602 -275504062 + AluJb SINE Alu 117 303 -9 282 308 14 7 chr1 6690005 6690117 -275503547 - MIR SINE MIR -51 211 100 2344 88 0 14 chr1 6690503 6690800 -275502864 + AluY SINE Alu 1 293 -18 1670 137 12 99 chr1 6690829 6691151 -275502513 + AluJo SINE Alu 1 294 -18 488 222 56 19 chr1 6691164 6691326 -275502338 + L2 LINE L2 2856 3023 -290 246 225 50 38 chr1 6691359 6691439 -275502225 + MIR SINE MIR 75 155 -107 1564 119 5 0 chr1 6692199 6692417 -275501247 + AluSx SINE Alu 1 219 -93 751 130 0 32 chr1 6692417 6692540 -275501124 + AluSg/x SINE Alu 186 304 -6 548 224 133 12 chr1 6692579 6692744 -275500920 - MER58 DNA MER1_type -2177 243 59 736 199 0 22 chr1 6694230 6694366 -275499298 + AluJo SINE Alu 2 134 -178 2113 123 0 0 chr1 6694367 6694644 -275499020 + AluSp SINE Alu 1 277 -36 201 39 0 0 chr1 6694654 6694680 -275498984 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2181 84 7 3 chr1 6694680 6694966 -275498698 + AluY SINE Alu 1 287 -24 2303 91 0 26 chr1 6695486 6695656 -275498008 - AluSx SINE Alu -11 301 128 317 86 17 0 chr1 6695656 6695714 -275497950 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 2045 114 4 4 chr1 6695714 6695994 -275497670 - AluSc SINE Alu -29 280 1 2303 91 0 26 chr1 6695994 6696131 -275497533 - AluSx SINE Alu -182 130 1 1585 140 85 51 chr1 6696131 6696287 -275497377 - AluJb SINE Alu -9 303 154 2165 82 4 0 chr1 6696287 6696567 -275497097 - AluY SINE Alu 0 311 31 1585 140 85 51 chr1 6696567 6696703 -275496961 - AluJb SINE Alu -158 154 1 2178 128 7 0 chr1 6696976 6697272 -275496392 + AluSg SINE Alu 1 298 -12 1824 157 14 7 chr1 6697290 6697584 -275496080 + AluSx SINE Alu 5 300 -12 2078 128 21 0 chr1 6697705 6697993 -275495671 + AluSx SINE Alu 5 298 -14 1413 135 24 0 chr1 6698158 6698366 -275495298 - AluSg/x SINE Alu -14 298 86 1816 163 0 14 chr1 6698394 6698689 -275494975 + AluJb SINE Alu 1 291 -21 747 110 0 0 chr1 6698697 6698797 -275494867 + AluS SINE Alu 2 101 -211 2438 82 3 0 chr1 6698961 6699265 -275494399 + AluY SINE Alu 5 309 -2 2072 114 4 0 chr1 6699447 6699754 -275493910 + AluSx SINE Alu 1 308 0 626 250 158 45 chr1 6699761 6700165 -275493499 + HAL1 LINE L1 1382 1831 -676 810 241 22 13 chr1 6700177 6700409 -275493255 + L1ME1 LINE L1 5907 6140 -26 2107 137 38 47 chr1 6700424 6700711 -275492953 + MER65A LTR ERV1 6 289 -156 2324 100 3 13 chr1 6700711 6701021 -275492643 - AluSx SINE Alu -1 311 5 2107 137 38 47 chr1 6701021 6701177 -275492487 + MER65A LTR ERV1 289 445 0 2333 115 0 0 chr1 6701178 6701483 -275492181 - AluSx SINE Alu -6 306 2 390 366 46 6 chr1 6701523 6701698 -275491966 + L1MEd LINE L1 1053 1234 -4971 418 318 8 29 chr1 6701726 6701971 -275491693 + L1MEd LINE L1 1545 1784 -4612 861 214 0 19 chr1 6702158 6702312 -275491352 + FRAM SINE Alu 1 151 -15 375 23 0 0 chr1 6702312 6702356 -275491308 + (GA)n Simple_repeat Simple_repeat 2 45 0 2037 92 100 0 chr1 6702536 6702807 -275490857 + AluSx SINE Alu 1 298 -14 1220 303 85 38 chr1 6702849 6703692 -275489972 + L2 LINE L2 2307 3184 -129 990 171 5 50 chr1 6704691 6704890 -275488774 + AluSg/x SINE Alu 120 309 -1 222 37 0 0 chr1 6704947 6704974 -275488690 + (TG)n Simple_repeat Simple_repeat 2 28 0 1955 151 0 7 chr1 6704989 6705288 -275488376 - AluJb SINE Alu -15 297 1 451 141 0 0 chr1 6705294 6705372 -275488292 + MER53 DNA DNA 111 188 -1 2228 112 0 3 chr1 6705542 6705837 -275487827 + AluSx SINE Alu 1 294 -18 2236 133 0 0 chr1 6705839 6706141 -275487523 + AluSx SINE Alu 1 302 -10 1828 180 6 3 chr1 6706341 6706652 -275487012 + AluJo SINE Alu 1 312 0 2595 63 0 19 chr1 6707158 6707475 -275486189 + AluY SINE Alu 1 311 0 2630 62 0 0 chr1 6707545 6707852 -275485812 + AluSg SINE Alu 1 307 -3 2123 92 23 20 chr1 6708882 6709185 -275484479 + AluSx SINE Alu 1 304 -8 852 288 17 13 chr1 6710606 6710842 -275482822 - MIR SINE MIR -25 237 1 1497 168 58 123 chr1 6710902 6711383 -275482281 - LTR7 LTR ERV1 0 450 1 924 74 0 0 chr1 6711548 6711670 -275481994 - L1PA8 LINE L1 -1 6171 6050 1764 159 35 3 chr1 6712000 6712290 -275481374 - AluJo SINE Alu -13 299 1 270 138 0 0 chr1 6712324 6712382 -275481282 + (TA)n Simple_repeat Simple_repeat 1 58 0 1730 159 0 4 chr1 6712390 6712654 -275481010 - AluJb SINE Alu -49 263 1 27 29 0 0 chr1 6712654 6712688 -275480976 + AT_rich Low_complexity Low_complexity 1 34 0 2316 47 54 0 chr1 6713225 6713504 -275480160 + AluY SINE Alu 1 294 -17 1800 123 38 131 chr1 6713622 6713989 -275479675 + MER1B DNA MER1_type 1 333 -4 244 336 79 14 chr1 6715236 6715361 -275478303 + MIR SINE MIR 33 161 -61 180 298 35 114 chr1 6715394 6715489 -275478175 + MIR SINE MIR 28 129 -133 2139 111 0 57 chr1 6715489 6715804 -275477860 - AluSg SINE Alu -13 297 1 180 298 35 114 chr1 6715804 6715963 -275477701 + MIR SINE MIR 129 262 0 766 156 0 47 chr1 6716023 6716151 -275477513 + AluJo/FLAM SINE Alu 11 132 -180 1314 79 12 0 chr1 6716151 6716315 -275477349 - AluY SINE Alu -11 300 135 2448 64 0 32 chr1 6716317 6716630 -275477034 - AluY SINE Alu -8 303 1 21 0 0 0 chr1 6716630 6716651 -275477013 + AT_rich Low_complexity Low_complexity 1 21 0 822 234 172 7 chr1 6716702 6716975 -275476689 - LTR36 LTR ERV1 0 611 294 797 157 119 27 chr1 6717009 6717177 -275476487 - LTR36 LTR ERV1 -407 204 16 2167 119 13 3 chr1 6717177 6717479 -275476185 + AluSx SINE Alu 1 305 -7 797 157 119 27 chr1 6717479 6717495 -275476169 - LTR36 LTR ERV1 -595 16 3 628 198 0 0 chr1 6717495 6717596 -275476068 + FRAM SINE Alu 52 152 -24 23 0 0 0 chr1 6717609 6717632 -275476032 + AT_rich Low_complexity Low_complexity 1 23 0 2210 120 0 10 chr1 6717632 6717941 -275475723 + AluSg SINE Alu 1 306 -4 2046 126 7 27 chr1 6718100 6718401 -275475263 + AluSx SINE Alu 1 295 -17 2436 93 0 0 chr1 6718403 6718704 -275474960 + AluSp SINE Alu 1 301 -12 1764 55 0 0 chr1 6720467 6720669 -275472995 - AluY SINE Alu -107 204 3 291 311 198 6 chr1 6720813 6720980 -275472684 + MIR SINE MIR 21 219 -43 309 294 69 0 chr1 6721242 6721344 -275472320 + MIR SINE MIR 88 196 -66 2014 88 55 4 chr1 6721524 6721798 -275471866 - AluSp SINE Alu -15 298 11 229 377 91 32 chr1 6721899 6722273 -275471391 + L2 LINE L2 2417 2812 -502 471 256 64 8 chr1 6722315 6722440 -275471224 + L2 LINE L2 3137 3268 -4 2609 53 0 3 chr1 6723657 6723959 -275469705 + AluY SINE Alu 1 301 -10 888 266 110 30 chr1 6724577 6724939 -275468725 + MLT1I LTR MaLR 3 393 -16 263 170 38 0 chr1 6724939 6724992 -275468672 - Charlie1 DNA MER1_type 0 2761 2707 1699 177 57 45 chr1 6725094 6725487 -275468177 - Charlie1 DNA MER1_type -32 2729 2342 2223 168 134 0 chr1 6725487 6725905 -275467759 - MER101 LTR ERV1 0 474 1 1699 177 57 45 chr1 6725905 6726079 -275467585 - Charlie1 DNA MER1_type -419 2342 1 916 155 88 44 chr1 6726147 6726328 -275467336 - AluJo SINE Alu -123 189 1 467 246 9 0 chr1 6726328 6726438 -275467226 - L1M4 LINE L1 -3318 2828 2718 2361 106 0 3 chr1 6726932 6727235 -275466429 + AluSx SINE Alu 1 302 -10 356 192 0 0 chr1 6727487 6727560 -275466104 - L1ME3A LINE L1 -8 6162 6090 336 287 73 30 chr1 6727681 6727845 -275465819 - MIR SINE MIR -2 260 90 * 454 312 99 14 chr1 6727833 6728054 -275465610 - MIR SINE MIR -11 251 12 1451 204 15 4 chr1 6728398 6728668 -275464996 - AluJb SINE Alu -39 273 1 180 0 0 0 chr1 6729130 6729150 -275464514 + (T)n Simple_repeat Simple_repeat 1 20 0 917 121 27 0 chr1 6730959 6731108 -275462556 + L1MB4 LINE L1 6022 6174 -6 25 0 0 0 chr1 6731108 6731133 -275462531 + AT_rich Low_complexity Low_complexity 1 25 0 1822 174 14 0 chr1 6732365 6732641 -275461023 + AluJo SINE Alu 1 280 -32 248 281 23 86 chr1 6733070 6733198 -275460466 + MIR3 SINE MIR 50 169 -39 244 340 21 7 chr1 6733524 6733658 -275460006 + MIR SINE MIR 20 156 -64 1918 149 3 17 chr1 6733719 6734021 -275459643 + AluJo SINE Alu 3 300 -12 2186 89 62 7 chr1 6734130 6734422 -275459242 - AluSp SINE Alu -5 308 1 1816 158 0 17 chr1 6734624 6734916 -275458748 - AluJo SINE Alu -25 287 1 476 230 197 0 chr1 6734926 6735113 -275458551 + Charlie8 DNA MER1_type 40 286 -2131 1764 176 10 26 chr1 6735591 6735904 -275457760 + AluJb SINE Alu 1 308 -4 1106 156 6 0 chr1 6736574 6736734 -275456930 - AluJ SINE Alu -18 294 134 2375 103 3 0 chr1 6736734 6737035 -275456629 - AluSx SINE Alu -10 302 1 1411 200 27 21 chr1 6737482 6737812 -275455852 + L1MD3 LINE L1 7658 7989 -6 328 306 56 9 chr1 6737813 6737921 -275455743 - MIR3 SINE MIR -20 188 76 379 106 0 26 chr1 6738011 6738088 -275455576 - FLAM SINE Alu -3 130 68 1927 117 7 4 chr1 6738088 6738361 -275455303 - AluSq SINE Alu 0 313 40 2217 144 0 0 chr1 6739179 6739491 -275454173 + AluSx SINE Alu 1 312 0 2136 96 43 3 chr1 6739495 6739777 -275453887 + AluY SINE Alu 2 294 -17 2375 73 21 0 chr1 6739778 6740064 -275453600 + AluY SINE Alu 1 292 -19 204 40 0 0 chr1 6740095 6740120 -275453544 + (CAAAT)n Simple_repeat Simple_repeat 2 26 0 1935 76 0 20 chr1 6741106 6741357 -275452307 + AluY SINE Alu 51 296 -15 2303 81 0 11 chr1 6741736 6742086 -275451578 - AluSq SINE Alu 0 347 1 2338 122 0 0 chr1 6742098 6742409 -275451255 - AluSx SINE Alu -1 311 1 754 191 0 0 chr1 6742582 6742713 -275450951 + FLAM_C SINE Alu 3 133 0 2315 85 7 10 chr1 6742876 6743181 -275450483 + AluY SINE Alu 1 304 -7 2281 92 0 46 chr1 6744612 6744937 -275448727 + AluSx SINE Alu 1 310 -2 1821 178 3 3 chr1 6745949 6746241 -275447423 + AluJo SINE Alu 5 296 -16 2610 66 3 0 chr1 6746776 6747081 -275446583 + AluY SINE Alu 1 306 -5 245 277 54 31 chr1 6747323 6747453 -275446211 + MIR SINE MIR 16 148 -60 611 143 41 0 chr1 6748290 6748388 -275445276 - LTR12 LTR ERV1 0 714 613 342 212 35 0 chr1 6748388 6748473 -275445191 - LTR30 LTR ERV1 -79 643 556 1325 82 11 149 chr1 6748474 6748742 -275444922 - LTR12 LTR ERV1 -429 285 55 273 146 0 21 chr1 6748742 6748790 -275444874 - LTR12 LTR ERV1 -596 118 72 248 250 0 0 chr1 6748798 6748850 -275444814 - LTR30 LTR ERV1 -670 52 1 2149 102 0 0 chr1 6748850 6749124 -275444540 + AluSq SINE Alu 31 304 -9 1145 114 0 148 chr1 6749133 6749369 -275444295 + AluJb SINE Alu 87 287 -25 403 271 37 0 chr1 6750181 6750288 -275443376 + L1MA9 LINE L1 6180 6290 -22 191 345 244 16 chr1 6750343 6750589 -275443075 + L3 LINE CR1 520 821 -756 928 270 47 58 chr1 6750685 6750858 -275442806 - L2 LINE L2 -1 3312 3139 2289 105 3 0 chr1 6750858 6751152 -275442512 + AluSx SINE Alu 1 295 -17 928 270 47 58 chr1 6751152 6751224 -275442440 - L2 LINE L2 -174 3139 3068 2567 54 3 13 chr1 6751224 6751538 -275442126 - AluY SINE Alu 0 311 1 2075 127 3 7 chr1 6751544 6751836 -275441828 - AluSq SINE Alu -22 291 1 928 270 47 58 chr1 6751836 6752067 -275441597 - L2 LINE L2 -250 3063 2833 280 301 10 10 chr1 6752099 6752202 -275441462 + L3 LINE CR1 1273 1375 -202 492 258 31 25 chr1 6752664 6752823 -275440841 - HAL1 LINE L1 -2 2505 2346 598 293 55 21 chr1 6752865 6753155 -275440509 - HAL1 LINE L1 -328 2179 1880 851 153 82 0 chr1 6753162 6753332 -275440332 + Tigger1 DNA MER2_type 1744 1927 -491 2467 56 0 3 chr1 6753369 6753656 -275440008 + AluY SINE Alu 1 286 -25 444 239 96 117 chr1 6753725 6754286 -275439378 - MLT1H1 LTR MaLR -1 548 1 1536 171 0 113 chr1 6754389 6754717 -275438947 - AluJb SINE Alu -21 291 1 1029 239 97 15 chr1 6754717 6755191 -275438473 + MER114 LTR ERV 2 578 -70 2430 96 0 0 chr1 6755191 6755492 -275438172 - AluSg SINE Alu -9 301 1 1849 136 54 4 chr1 6755494 6755773 -275437891 - AluSx SINE Alu -19 293 1 2433 63 0 78 chr1 6756217 6756550 -275437114 + AluSc SINE Alu 1 307 -2 1518 112 0 40 chr1 6758660 6758883 -275434781 + AluSq SINE Alu 87 300 -13 2271 110 3 7 chr1 6760413 6760722 -275432942 - AluSx SINE Alu -4 308 1 1668 210 0 0 chr1 6760724 6761019 -275432645 - AluJo SINE Alu -6 306 12 1587 152 86 4 chr1 6761041 6761310 -275432354 - AluJb SINE Alu -19 293 3 1641 113 18 0 chr1 6761379 6761601 -275432063 + AluSg/x SINE Alu 72 297 -15 2371 60 35 0 chr1 6761845 6762128 -275431536 + AluY SINE Alu 1 293 -18 707 209 0 0 chr1 6762167 6762296 -275431368 + AluSg/x SINE Alu 147 275 -37 2102 145 3 0 chr1 6762558 6762854 -275430810 + AluJb SINE Alu 1 297 -15 2454 84 0 3 chr1 6762858 6763157 -275430507 + AluSx SINE Alu 1 298 -14 232 247 39 26 chr1 6763173 6763250 -275430414 + MER5A DNA MER1_type 111 188 -1 2414 92 10 0 chr1 6763472 6763776 -275429888 - AluSc SINE Alu -2 307 1 340 191 16 0 chr1 6763861 6763924 -275429740 - Tigger5 DNA MER2_type 0 2323 2260 2251 96 23 13 chr1 6763931 6764233 -275429431 + AluSq SINE Alu 1 305 -8 993 181 54 15 chr1 6764233 6764437 -275429227 - AluJb SINE Alu -97 215 4 318 231 87 19 chr1 6764726 6764817 -275428847 - MER5B DNA MER1_type -21 157 60 234 252 192 20 chr1 6764817 6764968 -275428696 + MER5B DNA MER1_type 2 178 0 520 310 7 0 chr1 6765890 6766032 -275427632 - Charlie8 DNA MER1_type -2197 220 78 2252 102 10 20 chr1 6766880 6767185 -275426479 + AluSx SINE Alu 1 302 -10 1962 76 0 0 chr1 6767199 6767435 -275426229 + AluY SINE Alu 56 291 -20 1063 266 151 75 chr1 6767712 6767739 -275425925 + L2 LINE L2 1774 1798 -1515 2550 57 3 0 chr1 6767739 6768036 -275425628 + AluY SINE Alu 1 298 -13 1063 266 151 75 chr1 6768036 6768623 -275425041 + L2 LINE L2 1798 2339 -974 793 173 0 0 chr1 6768623 6768756 -275424908 - FLAM_C SINE Alu 0 133 1 1063 266 151 75 chr1 6768756 6769348 -275424316 + L2 LINE L2 2339 3085 -228 658 157 50 25 chr1 6769655 6769776 -275423888 + FRAM SINE Alu 38 161 -15 377 270 80 58 chr1 6769776 6769876 -275423788 - L1ME LINE L1 -3775 2869 2773 246 32 0 0 chr1 6769876 6769907 -275423757 + (TG)n Simple_repeat Simple_repeat 2 32 0 377 270 80 58 chr1 6769907 6769922 -275423742 - L1ME LINE L1 -3871 2773 2760 2237 97 35 0 chr1 6769922 6770210 -275423454 - AluSq SINE Alu -15 298 1 377 270 80 58 chr1 6770210 6770230 -275423434 - L1ME LINE L1 -3884 2760 2730 226 293 61 0 chr1 6770327 6770426 -275423238 - L1ME LINE L1 -4832 1710 1606 1762 112 73 15 chr1 6770505 6770764 -275422900 - AluSq SINE Alu -39 274 1 249 187 227 53 chr1 6770767 6770842 -275422822 - L1ME LINE L1 -5977 657 570 506 317 43 0 chr1 6771428 6771589 -275422075 + MIR SINE MIR 92 259 -3 2341 102 0 7 chr1 6771682 6771985 -275421679 + AluSx SINE Alu 1 301 -11 738 128 0 38 chr1 6772502 6772635 -275421029 + FLAM_C SINE Alu 16 143 0 354 246 154 51 chr1 6773322 6773497 -275420167 - Charlie8 DNA MER1_type -2137 280 88 2053 154 0 3 chr1 6774164 6774463 -275419201 + AluJb SINE Alu 1 298 -14 217 208 21 0 chr1 6774613 6774661 -275419003 - L2 LINE L2 -1 3271 3223 24 0 0 0 chr1 6775729 6775753 -275417911 + AT_rich Low_complexity Low_complexity 1 24 0 2107 113 0 27 chr1 6777387 6777687 -275415977 - AluSx SINE Alu -20 292 1 1329 175 15 105 chr1 6779086 6779411 -275414253 - AluJb SINE Alu -16 296 1 1967 108 72 4 chr1 6779413 6779691 -275413973 - AluSq SINE Alu -16 297 1 1316 157 120 25 chr1 6779694 6779968 -275413696 - AluSq SINE Alu -13 300 1 1614 185 3 39 chr1 6779997 6780305 -275413359 + AluJo SINE Alu 1 297 -15 768 191 0 0 chr1 6780305 6780436 -275413228 + FLAM_C SINE Alu 1 131 -2 2271 95 14 3 chr1 6780444 6780740 -275412924 + AluSx SINE Alu 3 301 -11 1827 109 4 0 chr1 6782156 6782394 -275411270 - AluSq SINE Alu -74 239 1 247 360 198 7 chr1 6783056 6783334 -275410330 - L2 LINE L2 -17 3296 2966 445 290 172 56 chr1 6783475 6783649 -275410015 - L2 LINE L2 -728 2586 2434 1987 134 3 0 chr1 6783649 6783941 -275409723 + AluSx SINE Alu 1 293 -19 445 290 172 56 chr1 6783941 6784284 -275409380 - L2 LINE L2 -880 2434 1952 363 230 32 97 chr1 6784357 6784448 -275409216 + L1ME3A LINE L1 5624 5719 -459 2204 90 0 26 chr1 6784448 6784758 -275408906 - AluSx SINE Alu -10 302 1 363 230 32 97 chr1 6784758 6784883 -275408781 + L1ME3A LINE L1 5719 5826 -352 362 239 91 77 chr1 6784887 6784990 -275408674 + L1ME3A LINE L1 5950 6050 -120 1968 124 7 7 chr1 6784990 6785288 -275408376 - AluJo SINE Alu -14 298 1 362 239 91 77 chr1 6785288 6785393 -275408271 + L1ME3A LINE L1 6050 6161 -9 212 306 45 45 chr1 6785406 6785517 -275408147 - L2 LINE L2 -1480 1834 1724 216 0 0 0 chr1 6785544 6785568 -275408096 + (CCGGG)n Simple_repeat Simple_repeat 3 26 0 24 0 0 0 chr1 6785851 6785875 -275407789 + GC_rich Low_complexity Low_complexity 1 24 0 2116 117 0 10 chr1 6786741 6787049 -275406615 + AluSq SINE Alu 1 305 -8 1868 147 7 7 chr1 6790098 6790264 -275403400 - AluJo SINE Alu -12 300 132 2220 80 6 45 chr1 6790264 6790576 -275403088 - AluSg SINE Alu -10 300 1 1868 147 7 7 chr1 6790576 6790709 -275402955 - AluJo SINE Alu -179 133 1 205 179 0 0 chr1 6791283 6791322 -275402342 + CT-rich Low_complexity Low_complexity 2 40 0 2022 98 42 7 chr1 6791675 6791961 -275401703 + AluSq SINE Alu 1 296 -17 2163 115 0 10 chr1 6792367 6792680 -275400984 + AluSx SINE Alu 1 310 -2 694 163 106 0 chr1 6792757 6792880 -275400784 + AluJo SINE Alu 1 136 -176 1838 148 10 0 chr1 6792881 6793172 -275400492 + AluJb SINE Alu 1 294 -18 490 254 40 20 chr1 6793350 6793512 -275400152 + MIR SINE MIR 12 173 -62 1913 116 33 10 chr1 6793585 6793886 -275399778 + AluSg SINE Alu 1 308 -2 1719 130 69 0 chr1 6793930 6794206 -275399458 + AluSx SINE Alu 1 295 -17 2362 60 3 3 chr1 6794988 6795288 -275398376 + AluSg SINE Alu 2 301 -9 22 80 0 0 chr1 6796084 6796134 -275397530 + GC_rich Low_complexity Low_complexity 1 50 0 23 0 0 0 chr1 6796167 6796190 -275397474 + GC_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr1 6796547 6796573 -275397091 + GC_rich Low_complexity Low_complexity 1 26 0 25 31 0 0 chr1 6796707 6796739 -275396925 + GC_rich Low_complexity Low_complexity 1 32 0 217 196 0 89 chr1 6797252 6797364 -275396300 + G-rich Low_complexity Low_complexity 4 105 0 246 210 8 89 chr1 6797803 6797960 -275395704 + G-rich Low_complexity Low_complexity 1 144 0 2471 54 0 0 chr1 6798863 6799160 -275394504 + AluSg SINE Alu 1 297 -13 201 143 0 0 chr1 6799161 6799196 -275394468 + MIR SINE MIR 108 142 -66 198 0 0 0 chr1 6799233 6799255 -275394409 + (TTG)n Simple_repeat Simple_repeat 2 23 0 2187 89 3 0 chr1 6799590 6799883 -275393781 - AluSc SINE Alu -15 294 1 816 78 0 0 chr1 6800024 6800126 -275393538 + AluS SINE Alu 1 102 -210 728 67 0 0 chr1 6800130 6800220 -275393444 + AluSp/q SINE Alu 208 297 -16 844 162 26 26 chr1 6800223 6800414 -275393250 - AluJo SINE Alu -118 194 4 2031 124 10 3 chr1 6800605 6800904 -275392760 - AluSq SINE Alu -10 303 3 2078 85 0 0 chr1 6801170 6801440 -275392224 + AluSc SINE Alu 16 285 -24 2205 91 0 26 chr1 6801960 6802130 -275391534 - AluSx SINE Alu -11 301 128 317 86 17 0 chr1 6802130 6802188 -275391476 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 1965 114 4 4 chr1 6802188 6802468 -275391196 - AluSc SINE Alu -29 280 1 2205 91 0 26 chr1 6802468 6802605 -275391059 - AluSx SINE Alu -182 130 1 1519 143 85 51 chr1 6802605 6802761 -275390903 - AluJb SINE Alu -9 303 154 2080 82 4 0 chr1 6802761 6803041 -275390623 - AluY SINE Alu 0 311 31 1519 143 85 51 chr1 6803041 6803177 -275390487 - AluJb SINE Alu -158 154 1 2091 128 7 0 chr1 6803450 6803746 -275389918 + AluSg SINE Alu 1 298 -12 1743 157 14 7 chr1 6803764 6804058 -275389606 + AluSx SINE Alu 5 300 -12 1989 128 21 0 chr1 6804179 6804467 -275389197 + AluSx SINE Alu 5 298 -14 1373 133 24 0 chr1 6804630 6804840 -275388824 - AluSg/x SINE Alu -12 300 86 1744 163 0 14 chr1 6804868 6805163 -275388501 + AluJb SINE Alu 1 291 -21 2141 99 3 3 chr1 6805171 6805464 -275388200 + AluSx SINE Alu 1 293 -19 769 124 0 0 chr1 6805650 6805763 -275387901 - AluSg/x SINE Alu -2 310 198 515 133 133 0 chr1 6805765 6805855 -275387809 + AluSc SINE Alu 191 292 -17 548 214 179 29 chr1 6806147 6806287 -275387377 - FRAM SINE Alu -5 161 1 1396 117 120 62 chr1 6806299 6806573 -275387091 - AluSx SINE Alu -12 290 1 30 77 0 0 chr1 6808276 6808341 -275385323 + GC_rich Low_complexity Low_complexity 1 65 0 260 277 0 85 chr1 6810940 6810971 -275382693 - L1ME3A LINE L1 0 6170 6138 1943 149 10 0 chr1 6810971 6811267 -275382397 + AluJb SINE Alu 1 299 -13 260 277 0 85 chr1 6811267 6811365 -275382299 - L1ME3A LINE L1 -32 6138 6052 181 217 22 22 chr1 6812342 6812388 -275381276 - MIR SINE MIR -111 151 106 2361 80 0 3 chr1 6812402 6812713 -275380951 - AluY SINE Alu -1 310 1 201 39 0 0 chr1 6812713 6812739 -275380925 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2026 123 0 0 chr1 6812749 6813026 -275380638 - AluSp SINE Alu -36 277 1 745 197 0 22 chr1 6813027 6813164 -275380500 - AluJo SINE Alu -178 134 1 531 224 133 12 chr1 6814651 6814816 -275378848 + MER58 DNA MER1_type 59 243 -2177 759 130 0 32 chr1 6814855 6814978 -275378686 - AluSg/x SINE Alu -6 306 188 1509 119 5 0 chr1 6814978 6815196 -275378468 - AluSx SINE Alu -93 219 1 229 250 38 25 chr1 6815956 6816036 -275377628 - MIR SINE MIR -107 155 75 488 241 49 12 chr1 6816069 6816231 -275377433 - L2 LINE L2 -290 3023 2856 1639 136 9 99 chr1 6816244 6816567 -275377097 - AluJo SINE Alu -18 294 1 2241 88 0 14 chr1 6816596 6816893 -275376771 - AluY SINE Alu -18 293 1 313 308 14 7 chr1 6817279 6817391 -275376273 + MIR SINE MIR 100 211 -51 749 186 0 0 chr1 6820774 6820892 -275372772 + AluJb SINE Alu 1 118 -194 780 188 0 0 chr1 6821240 6821373 -275372291 - AluSg/x SINE Alu -6 306 174 541 286 129 40 chr1 6825746 6826424 -275367240 + L2 LINE L2 2554 3294 -19 584 251 61 0 chr1 6826931 6827094 -275366570 + MER3 DNA MER1_type 1 126 -83 2020 117 10 10 chr1 6827100 6827232 -275366432 + AluSg SINE Alu 1 132 -178 2221 99 0 16 chr1 6827232 6827546 -275366118 + AluSg SINE Alu 1 309 -1 2020 117 10 10 chr1 6827546 6827713 -275365951 + AluSg SINE Alu 131 300 -10 2265 98 3 0 chr1 6827715 6828021 -275365643 + AluSg SINE Alu 1 307 -3 2113 127 3 3 chr1 6828025 6828333 -275365331 + AluSc SINE Alu 1 308 -1 850 131 0 44 chr1 6828344 6828481 -275365183 + FLAM_C SINE Alu 1 131 -2 1935 141 0 20 chr1 6829634 6829938 -275363726 - AluJb SINE Alu -14 298 1 189 0 0 0 chr1 6832510 6832531 -275361133 + (CAG)n Simple_repeat Simple_repeat 2 22 0 2418 71 0 10 chr1 6833461 6833771 -275359893 - AluSq SINE Alu -6 307 1 2066 84 31 14 chr1 6833774 6834060 -275359604 - AluSx SINE Alu -19 293 3 1865 107 7 15 chr1 6835198 6835320 -275358344 + AluSx SINE Alu 15 136 -172 2325 81 0 7 chr1 6835320 6835628 -275358036 + AluY SINE Alu 1 306 -5 1865 107 7 15 chr1 6835628 6835801 -275357863 + AluSx SINE Alu 136 308 0 272 344 101 12 chr1 6836767 6837014 -275356650 - L2 LINE L2 -174 3098 2830 2924 89 105 7 chr1 6837023 6837351 -275356313 + MER1A DNA MER1_type 37 422 -2280 2396 65 0 3 chr1 6837351 6837661 -275356003 + AluY SINE Alu 1 309 -2 2924 89 105 7 chr1 6837661 6837781 -275355883 + MER1A DNA MER1_type 422 529 0 2090 109 0 3 chr1 6837841 6838134 -275355530 - AluSg SINE Alu -13 297 6 233 413 18 6 chr1 6838147 6838314 -275355350 - L2 LINE L2 -601 2713 2545 1759 155 31 3 chr1 6838758 6839049 -275354615 + AluJo SINE Alu 5 303 -9 1738 137 37 0 chr1 6839497 6839767 -275353897 - AluSx SINE Alu -32 280 1 863 182 77 59 chr1 6840643 6840863 -275352801 - MLT2D LTR ERVL -3 411 188 619 143 33 44 chr1 6841031 6841209 -275352455 + LTR21B LTR ERV1 310 438 0 12744 196 22 39 chr1 6841209 6842831 -275350833 + HERVFH21 LTR ERV1 5 1652 -4877 2319 73 0 19 chr1 6842831 6843146 -275350518 - AluY SINE Alu -2 309 1 12744 196 22 39 chr1 6843146 6843734 -275349930 + HERVFH21 LTR ERV1 1652 2248 -4281 2503 47 3 0 chr1 6843734 6844034 -275349630 - AluY SINE Alu -10 301 1 12744 196 22 39 chr1 6844034 6844420 -275349244 + HERVFH21 LTR ERV1 2248 2639 -3890 2208 74 3 0 chr1 6844420 6844704 -275348960 + AluY SINE Alu 1 285 -26 12744 196 22 39 chr1 6844704 6845593 -275348071 + HERVFH21 LTR ERV1 2639 3357 -3172 805 112 0 0 chr1 6845593 6845709 -275347955 + AluSg/x SINE Alu 193 308 -4 2297 251 17 0 chr1 6845709 6846232 -275347432 + HERVFH21 LTR ERV1 3349 3880 -2649 * 5402 139 13 4 chr1 6846226 6847184 -275346480 + HERVFH21 LTR ERV1 4540 5404 -1196 5045 253 7 16 chr1 6847519 6848730 -275344934 + HERVFH21 LTR ERV1 6553 7751 -648 1828 115 146 6 chr1 6848732 6848846 -275344818 + LTR14B LTR ERVK 1 98 -510 2255 94 0 0 chr1 6848846 6849144 -275344520 + AluY SINE Alu 1 298 -13 1828 115 146 6 chr1 6849144 6849482 -275344182 + LTR14B LTR ERVK 98 607 -1 1756 264 50 23 chr1 6849488 6849584 -275344080 + HERVFH21 LTR ERV1 5932 6024 -505 2076 107 0 13 chr1 6849584 6849884 -275343780 - AluY SINE Alu -15 296 1 1756 264 50 23 chr1 6849884 6850307 -275343357 + HERVFH21 LTR ERV1 6024 6465 -64 4805 144 14 4 chr1 6850344 6851219 -275342445 + HERVFH21 LTR ERV1 4572 5404 -1196 795 260 0 9 chr1 6851554 6851785 -275341879 + HERVFH21 LTR ERV1 6553 6781 -1618 377 128 13 34 chr1 6851886 6851964 -275341700 - Alu SINE Alu -248 52 1 235 178 0 0 chr1 6851938 6851983 -275341681 + MLT2D LTR ERVL 82 126 -288 * 2014 128 0 3 chr1 6851984 6852282 -275341382 + AluSx SINE Alu 1 297 -15 1856 108 3 93 chr1 6852294 6852626 -275341038 + AluSq SINE Alu 1 302 -11 1981 96 14 7 chr1 6852626 6852905 -275340759 + AluSp SINE Alu 1 282 -31 538 175 65 29 chr1 6852905 6853078 -275340586 - LTR21B LTR ERV1 0 438 293 1998 269 25 20 chr1 6853234 6853309 -275340355 - HERVFH21 LTR ERV1 0 6529 6456 2423 49 0 16 chr1 6853309 6853616 -275340048 + AluY SINE Alu 1 302 -9 1998 269 25 20 chr1 6853616 6854038 -275339626 - HERVFH21 LTR ERV1 -73 6456 6026 2076 107 0 13 chr1 6854038 6854338 -275339326 + AluY SINE Alu 1 296 -15 1998 269 25 20 chr1 6854338 6854434 -275339230 - HERVFH21 LTR ERV1 -503 6026 5932 1722 84 18 92 chr1 6854440 6854776 -275338888 - LTR14A LTR ERVK -1 343 54 2223 97 0 0 chr1 6854778 6855076 -275338588 - AluY SINE Alu -13 298 1 2349 52 3 0 chr1 6855123 6855410 -275338254 + AluY SINE Alu 1 288 -23 1565 89 0 0 chr1 6856026 6856228 -275337436 - AluY SINE Alu -9 302 101 1025 138 0 12 chr1 6856228 6856388 -275337276 - AluSx SINE Alu -154 158 1 362 300 10 0 chr1 6856405 6856567 -275337097 + L1MC4 LINE L1 1980 6926 -1139 324 254 20 0 chr1 6856535 6856635 -275337029 - L1MCa LINE L1 -1333 6989 1996 * 2196 103 3 0 chr1 6856676 6856978 -275336686 - AluSx SINE Alu -9 303 1 319 307 42 85 chr1 6856978 6857081 -275336583 - L1MC4 LINE L1 -1982 5826 5733 661 186 65 16 chr1 6857081 6857205 -275336459 - FLAM_A SINE Alu -3 130 1 319 307 42 85 chr1 6857205 6857290 -275336374 - L1MC4 LINE L1 -2075 5733 5646 1449 130 43 94 chr1 6857398 6857727 -275335937 - AluSx SINE Alu 0 314 1 1382 210 4 0 chr1 6857743 6857995 -275335669 - AluJb SINE Alu -59 253 1 2222 92 3 0 chr1 6858042 6858334 -275335330 + AluSp SINE Alu 1 293 -20 3136 163 52 69 chr1 6858357 6858543 -275335121 - L1MB4 LINE L1 -173 6007 5819 1632 178 13 16 chr1 6858543 6858847 -275334817 + AluJb SINE Alu 1 303 -9 3136 163 52 69 chr1 6858847 6859333 -275334331 - L1MB4 LINE L1 -361 5819 5326 2015 123 38 0 chr1 6859333 6859626 -275334038 - AluSx SINE Alu -8 304 1 2054 99 43 16 chr1 6859632 6859936 -275333728 - AluSq SINE Alu -1 312 1 3136 163 52 69 chr1 6859936 6860262 -275333402 - L1MB4 LINE L1 -859 5321 5010 323 58 0 0 chr1 6860315 6860367 -275333297 - Alu SINE Alu 0 300 249 910 67 0 8 chr1 6860367 6860486 -275333178 - AluYb8 SINE Alu -200 118 1 898 230 118 0 chr1 6860487 6860757 -275332907 - L1MB4 LINE L1 -1118 5028 4727 * 2378 190 61 7 chr1 6860745 6861304 -275332360 - L1 LINE L1 -791 5355 4767 636 203 61 54 chr1 6861307 6861455 -275332209 - FRAM SINE Alu -25 151 3 21 0 0 0 chr1 6861475 6861496 -275332168 + AT_rich Low_complexity Low_complexity 1 21 0 1387 200 46 7 chr1 6861496 6861781 -275331883 - AluJo SINE Alu -16 296 1 816 173 26 108 chr1 6861781 6861945 -275331719 - AluJo SINE Alu -16 296 120 269 0 56 0 chr1 6861945 6861981 -275331683 + (TTTTA)n Simple_repeat Simple_repeat 3 40 0 2239 71 0 0 chr1 6861981 6862262 -275331402 - AluY SINE Alu -30 281 1 816 173 26 108 chr1 6862262 6862327 -275331337 - AluJo SINE Alu -190 122 85 2276 94 0 3 chr1 6862383 6862682 -275330982 - AluSq SINE Alu -15 298 1 1362 263 29 61 chr1 6862895 6863219 -275330445 - L1MC4 LINE L1 -1110 6932 6628 2079 130 0 19 chr1 6863219 6863535 -275330129 + AluSx SINE Alu 3 312 0 1362 263 29 61 chr1 6863535 6863701 -275329963 - L1MC4 LINE L1 -1414 6628 6458 516 238 94 59 chr1 6863977 6864140 -275329524 + MIR SINE MIR 15 188 -74 2337 85 3 0 chr1 6864140 6864445 -275329219 + AluSp SINE Alu 1 306 -7 516 238 94 59 chr1 6864445 6864483 -275329181 + MIR SINE MIR 188 223 -39 364 331 52 7 chr1 6864509 6864645 -275329019 + L2 LINE L2 3169 3310 -3 1860 167 0 7 chr1 6865131 6865436 -275328228 - AluSx SINE Alu -9 303 1 682 292 82 0 chr1 6866411 6866630 -275327034 - MIR SINE MIR -24 238 2 2196 100 0 0 chr1 6866814 6867113 -275326551 + AluY SINE Alu 1 299 -12 366 263 153 43 chr1 6867257 6867466 -275326198 - MIR SINE MIR -10 252 21 351 324 75 6 chr1 6867486 6867659 -275326005 - MIR SINE MIR -18 244 60 2150 101 3 3 chr1 6867849 6868155 -275325509 - AluSq SINE Alu -7 306 1 954 179 0 42 chr1 6868180 6868370 -275325294 - AluSg/x SINE Alu -9 301 120 2103 138 0 0 chr1 6868371 6868683 -275324981 - AluSx SINE Alu 0 312 1 21 0 0 0 chr1 6868688 6868709 -275324955 + AT_rich Low_complexity Low_complexity 1 21 0 2162 107 3 0 chr1 6868709 6869018 -275324646 - AluSg SINE Alu 0 310 1 381 313 143 27 chr1 6869507 6870025 -275323639 + L2 LINE L2 2091 2668 -646 2132 117 3 0 chr1 6870373 6870673 -275322991 - AluSg SINE Alu -7 303 3 228 35 0 0 chr1 6870678 6870707 -275322957 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1534 128 8 0 chr1 6870726 6870960 -275322704 - AluSx SINE Alu -76 236 1 2173 98 7 3 chr1 6871058 6871363 -275322301 - AluSx SINE Alu -6 306 1 772 191 76 25 chr1 6873025 6873182 -275320482 + FRAM SINE Alu 1 165 -11 2334 77 0 3 chr1 6873288 6873588 -275320076 + AluY SINE Alu 1 299 -12 2349 78 3 0 chr1 6874723 6875029 -275318635 - AluSq SINE Alu -6 307 1 1983 106 0 4 chr1 6875140 6875415 -275318249 - AluSg SINE Alu -5 305 32 2448 66 0 0 chr1 6875421 6875723 -275317941 - AluSg SINE Alu -8 302 1 2011 131 13 0 chr1 6875751 6876057 -275317607 - AluSx SINE Alu 0 312 3 1254 86 6 17 chr1 6876089 6876263 -275317401 - AluSg SINE Alu -138 172 1 302 305 76 8 chr1 6876295 6876426 -275317238 + MIR SINE MIR 11 150 -112 319 263 202 0 chr1 6876904 6877018 -275316646 - L1ME4a LINE L1 -215 5906 5770 1944 126 23 19 chr1 6877137 6877447 -275316217 - AluSx SINE Alu -1 311 1 835 141 0 8 chr1 6877687 6877815 -275315849 + FLAM_C SINE Alu 13 139 -4 2320 68 3 0 chr1 6879186 6879480 -275314184 + AluY SINE Alu 2 296 -15 182 274 27 27 chr1 6879553 6879626 -275314038 + MIR3 SINE MIR 124 196 -12 2310 84 7 0 chr1 6879738 6880048 -275313616 - AluSp SINE Alu -1 312 1 455 172 0 0 chr1 6880118 6880182 -275313482 + T-rich Low_complexity Low_complexity 1 64 0 25 0 0 0 chr1 6880639 6880664 -275313000 + GC_rich Low_complexity Low_complexity 1 25 0 26 50 0 0 chr1 6881656 6881696 -275311968 + GC_rich Low_complexity Low_complexity 1 40 0 189 246 0 0 chr1 6881726 6881791 -275311873 + C-rich Low_complexity Low_complexity 1 65 0 624 190 114 16 chr1 7081988 7082172 -275111492 - HAL1 LINE L1 -651 1856 1655 647 293 111 91 chr1 7082196 7082582 -275111082 + HAL1 LINE L1 142 535 -1972 232 253 41 75 chr1 7082586 7082732 -275110932 - HAL1 LINE L1 -379 2128 1988 253 253 23 11 chr1 7082766 7082853 -275110811 - MIR SINE MIR -2 260 173 198 0 0 0 chr1 7083094 7083116 -275110548 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 888 117 0 0 chr1 7083117 7083237 -275110427 - AluSq/x SINE Alu -192 120 1 2238 124 0 0 chr1 7083628 7083935 -275109729 + AluSx SINE Alu 1 307 -5 197 281 18 0 chr1 7084076 7084133 -275109531 + L2 LINE L2 3254 3311 -2 2041 140 27 0 chr1 7084279 7084572 -275109092 + AluSx SINE Alu 1 301 -11 385 242 73 16 chr1 7084822 7084946 -275108718 + L2 LINE L2 3182 3312 -1 222 188 0 42 chr1 7085062 7085110 -275108554 - L2 LINE L2 -93 3220 3175 1389 106 0 0 chr1 7085121 7085300 -275108364 + AluSx SINE Alu 1 179 -133 362 289 15 55 chr1 7085329 7085530 -275108134 - MIR SINE MIR -50 212 20 1986 116 0 58 chr1 7085814 7086124 -275107540 + AluSx SINE Alu 1 292 -20 762 100 0 0 chr1 7087125 7087225 -275106439 + FRAM SINE Alu 59 158 -18 4719 114 4 4 chr1 7087225 7087934 -275105730 + L1PA16 LINE L1 5470 6178 0 2438 99 3 0 chr1 7088046 7088358 -275105306 + AluSq SINE Alu 1 313 0 623 306 45 27 chr1 7088417 7088753 -275104911 + L1ME LINE L1 5400 5741 -380 489 17 0 0 chr1 7088825 7088883 -275104781 + (TG)n Simple_repeat Simple_repeat 1 58 0 2114 83 7 4 chr1 7088883 7089161 -275104503 - AluSx SINE Alu -33 279 1 2185 111 0 7 chr1 7089357 7089663 -275104001 + AluSx SINE Alu 1 304 -8 691 265 34 0 chr1 7089890 7090094 -275103570 - MIR SINE MIR -51 211 1 2237 124 0 0 chr1 7090199 7090505 -275103159 + AluSx SINE Alu 1 306 -6 1298 129 0 0 chr1 7090505 7090683 -275102981 + AluSg/x SINE Alu 134 311 -1 273 119 0 0 chr1 7090683 7090725 -275102939 + (GGA)n Simple_repeat Simple_repeat 1 42 0 339 259 44 38 chr1 7090975 7091133 -275102531 - L2 LINE L2 -533 2781 2623 2378 86 3 22 chr1 7091255 7091568 -275102096 + AluSp SINE Alu 1 307 -6 2332 101 51 28 chr1 7091653 7092009 -275101655 + THE1B LTR MaLR 1 364 0 2121 136 0 3 chr1 7092273 7092583 -275101081 - AluSx SINE Alu -3 309 1 2132 116 3 0 chr1 7092991 7093284 -275100380 + AluSx SINE Alu 1 294 -18 723 176 57 23 chr1 7093863 7094039 -275099625 + MIR SINE MIR 67 248 -14 1026 128 116 6 chr1 7094176 7094348 -275099316 - AluJb SINE Alu -9 303 113 1127 167 112 73 chr1 7094506 7094793 -275098871 + AluJo SINE Alu 2 299 -3 2018 103 26 36 chr1 7094822 7095124 -275098540 + AluSx SINE Alu 1 299 -13 185 255 0 0 chr1 7095209 7095256 -275098408 - MER5C DNA MER1_type 0 324 278 210 91 0 0 chr1 7095258 7095291 -275098373 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 257 264 16 91 chr1 7095455 7095576 -275098088 - MER5C DNA MER1_type -205 119 8 756 263 43 0 chr1 7096037 7096246 -275097418 + MIR SINE MIR 22 239 -23 2148 110 0 0 chr1 7096246 7096566 -275097098 - AluSx SINE Alu 0 320 1 1827 150 0 41 chr1 7096583 7096783 -275096881 - AluJb SINE Alu -30 282 96 2321 105 0 16 chr1 7096783 7097097 -275096567 - AluSq SINE Alu -4 309 1 1827 150 0 41 chr1 7097097 7097190 -275096474 - AluJb SINE Alu -216 96 1 207 139 0 0 chr1 7097192 7097228 -275096436 + (CTA)n Simple_repeat Simple_repeat 1 36 0 669 200 23 8 chr1 7097511 7097641 -275096023 + AluJo SINE Alu 3 134 -178 2042 145 16 10 chr1 7097733 7098043 -275095621 + AluJb SINE Alu 1 312 0 2290 102 0 7 chr1 7098427 7098732 -275094932 - AluSq SINE Alu -10 303 1 372 312 24 0 chr1 7098748 7098873 -275094791 - L2 LINE L2 -1 3271 3144 2352 100 3 6 chr1 7099033 7099344 -275094320 + AluSp SINE Alu 1 310 -3 574 103 10 10 chr1 7099345 7099442 -275094222 + (GGAA)n Simple_repeat Simple_repeat 4 100 0 24 0 0 0 chr1 7100174 7100198 -275093466 + AT_rich Low_complexity Low_complexity 1 24 0 566 286 171 26 chr1 7100418 7100623 -275093041 + L2 LINE L2 2826 3000 -313 2149 120 0 7 chr1 7100623 7100924 -275092740 + AluSx SINE Alu 1 299 -13 566 286 171 26 chr1 7100924 7101144 -275092520 + L2 LINE L2 3000 3313 0 1960 125 26 26 chr1 7101322 7101626 -275092038 + AluJb SINE Alu 1 304 -8 2246 108 13 0 chr1 7101645 7101952 -275091712 + AluSx SINE Alu 1 311 -1 1947 127 0 0 chr1 7102212 7102471 -275091193 - AluSq SINE Alu -54 259 1 21 0 0 0 chr1 7102488 7102509 -275091155 + AT_rich Low_complexity Low_complexity 1 21 0 1513 170 69 24 chr1 7102822 7103110 -275090554 + AluJo SINE Alu 1 301 -11 575 234 289 7 chr1 7103621 7103925 -275089739 - L2 LINE L2 -3 3310 2921 2192 96 0 17 chr1 7103931 7104223 -275089441 - AluSq SINE Alu -4 309 23 528 229 33 26 chr1 7104302 7104455 -275089209 + L1MB8 LINE L1 6022 6175 -3 2006 141 0 34 chr1 7104466 7104601 -275089063 + AluJb SINE Alu 1 139 -173 2360 94 0 0 chr1 7104601 7104898 -275088766 + AluSx SINE Alu 1 297 -15 2006 141 0 34 chr1 7104898 7105082 -275088582 + AluJb SINE Alu 139 309 -3 2246 81 3 27 chr1 7105082 7105378 -275088286 + AluSx SINE Alu 1 289 -23 21 0 0 0 chr1 7105379 7105400 -275088264 + AT_rich Low_complexity Low_complexity 1 21 0 1146 259 68 28 chr1 7105444 7105945 -275087719 - L2 LINE L2 -467 2847 2327 952 203 48 84 chr1 7105945 7106324 -275087340 + MLT1B LTR MaLR 1 365 -25 261 0 0 0 chr1 7106330 7106359 -275087305 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 2067 123 4 0 chr1 7106361 7106637 -275087027 - AluSg SINE Alu -33 277 1 2158 129 0 3 chr1 7106687 7106997 -275086667 + AluSx SINE Alu 1 309 -3 6262 40 3 0 chr1 7107526 7108298 -275085366 + L1PA5 LINE L1 5409 6154 0 1311 59 24 0 chr1 7108576 7108746 -275084918 - L1MA3 LINE L1 0 6305 6132 709 93 19 0 chr1 7108807 7108914 -275084750 - L1MA2 LINE L1 -159 6145 6037 2028 116 26 0 chr1 7110485 7110787 -275082877 - AluSx SINE Alu -2 310 1 2498 73 3 0 chr1 7111320 7111623 -275082041 - AluSp SINE Alu -9 304 1 2191 59 0 0 chr1 7111908 7112162 -275081502 - AluY SINE Alu -14 297 44 1879 126 7 15 chr1 7112195 7112464 -275081200 + AluSx SINE Alu 1 267 -45 936 194 0 6 chr1 7112546 7112711 -275080953 - FAM SINE Alu -11 164 1 741 177 8 0 chr1 7112914 7113038 -275080626 + L1MC3 LINE L1 7241 7365 -420 2128 95 0 0 chr1 7113038 7113300 -275080364 + AluSc SINE Alu 1 262 -47 346 323 35 25 chr1 7113307 7113508 -275080156 + L1MEd LINE L1 43 245 -5874 1262 176 38 0 chr1 7113508 7113718 -275079946 + MER58A DNA MER1_type 1 218 -6 883 259 119 99 chr1 7113752 7113959 -275079705 + L1MEd LINE L1 269 471 -5648 2174 114 0 3 chr1 7113959 7114249 -275079415 + AluSq SINE Alu 1 289 -24 405 0 0 0 chr1 7114250 7114295 -275079369 + (GA)n Simple_repeat Simple_repeat 2 46 0 883 259 119 99 chr1 7114295 7114602 -275079062 + L1MEd LINE L1 471 771 -5348 1151 115 8 111 chr1 7114602 7114836 -275078828 + L1PB4 LINE L1 5946 6155 -1 883 259 119 99 chr1 7114836 7115195 -275078469 + L1MEd LINE L1 771 1162 -4957 1561 95 0 14 chr1 7115202 7115413 -275078251 + AluSc SINE Alu 102 309 0 647 261 75 37 chr1 7115759 7115956 -275077708 + L1MEd LINE L1 2114 2302 -3827 1854 186 0 3 chr1 7115956 7116291 -275077373 + AluSx SINE Alu 1 312 0 647 261 75 37 chr1 7116291 7116468 -275077196 + L1MEd LINE L1 2302 2502 -3627 1490 270 57 17 chr1 7116516 7116934 -275076730 + LTR16A LTR ERVL 16 450 0 247 283 52 98 chr1 7117348 7117521 -275076143 + MLT1K LTR MaLR 32 196 -392 701 212 117 35 chr1 7117615 7117846 -275075818 + MLT1K LTR MaLR 337 586 -2 600 150 10 0 chr1 7117896 7117996 -275075668 - L1PA13 LINE L1 -11 6152 6052 616 211 226 5 chr1 7118038 7118237 -275075427 + MIR SINE MIR 12 254 -8 244 278 112 58 chr1 7118238 7118437 -275075227 - L1ME LINE L1 -255 5866 5650 2106 123 14 0 chr1 7118437 7118730 -275074934 - AluSx SINE Alu -15 297 1 244 278 112 58 chr1 7118730 7118771 -275074893 - L1ME LINE L1 -471 5650 5613 207 97 0 0 chr1 7119108 7119139 -275074525 + L2 LINE L2 3239 3269 -3 212 0 0 108 chr1 7119378 7119393 -275074271 + (A)n Simple_repeat Simple_repeat 1 16 -17 2262 119 7 0 chr1 7119393 7119703 -275073961 + AluSx SINE Alu 1 312 0 212 0 0 108 chr1 7119703 7119724 -275073940 + (A)n Simple_repeat Simple_repeat 16 33 0 264 273 43 117 chr1 7120369 7120519 -275073145 + L2 LINE L2 2379 2500 -814 2079 127 0 29 chr1 7120519 7120833 -275072831 - AluJb SINE Alu -7 305 1 264 273 43 117 chr1 7120833 7120964 -275072700 + L2 LINE L2 2500 2639 -675 * 693 306 58 42 chr1 7120963 7121226 -275072438 + L2 LINE L2 2879 3153 -160 3222 66 50 0 chr1 7121226 7121266 -275072398 - MLT2A1 LTR ERVL 0 444 407 336 48 0 0 chr1 7121266 7121308 -275072356 + (TA)n Simple_repeat Simple_repeat 2 43 0 3222 66 50 0 chr1 7121308 7121690 -275071974 - MLT2A1 LTR ERVL -37 407 1 693 306 58 42 chr1 7121690 7121854 -275071810 + L2 LINE L2 3153 3313 0 285 328 29 23 chr1 7121902 7122076 -275071588 + L2 LINE L2 252 426 -2888 1530 143 18 94 chr1 7122245 7122573 -275071091 + AluJo SINE Alu 1 303 -9 2046 151 0 0 chr1 7122699 7123003 -275070661 - AluJb SINE Alu -8 304 1 2015 156 0 3 chr1 7123317 7123618 -275070046 + AluSx SINE Alu 1 300 -12 2312 86 3 0 chr1 7124275 7124565 -275069099 - AluSq SINE Alu -22 291 1 423 249 217 37 chr1 7125178 7125191 -275068473 - MIR SINE MIR 0 262 253 2077 139 0 0 chr1 7125191 7125492 -275068172 + AluSx SINE Alu 1 301 -11 423 249 217 37 chr1 7125492 7125695 -275067969 - MIR SINE MIR -9 253 7 180 0 0 0 chr1 7125963 7125983 -275067681 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 2362 98 0 3 chr1 7126166 7126472 -275067192 + AluSq SINE Alu 1 305 -8 2153 129 7 0 chr1 7126806 7127146 -275066518 + AluSp SINE Alu 1 313 0 2472 58 0 0 chr1 7127306 7127599 -275066065 + AluSc SINE Alu 3 295 -14 234 0 0 0 chr1 7127626 7127652 -275066012 + (TG)n Simple_repeat Simple_repeat 2 27 0 24 53 0 0 chr1 7127970 7128008 -275065656 + AT_rich Low_complexity Low_complexity 1 38 0 260 332 0 37 chr1 7130306 7130493 -275063171 + (TCCCG)n Simple_repeat Simple_repeat 1 180 0 * 291 386 0 0 chr1 7130390 7130566 -275063098 + (CACCG)n Simple_repeat Simple_repeat 3 178 0 186 103 0 0 chr1 7131061 7131090 -275062574 + (CGG)n Simple_repeat Simple_repeat 2 30 0 24 0 0 0 chr1 7131292 7131316 -275062348 + GC_rich Low_complexity Low_complexity 1 24 0 230 238 181 29 chr1 7132827 7132932 -275060732 + L2 LINE L2 3190 3310 -3 1858 148 3 3 chr1 7133813 7134118 -275059546 + AluJb SINE Alu 1 305 -7 600 284 140 27 chr1 7134297 7134589 -275059075 + L2 LINE L2 2989 3313 0 270 317 36 3 chr1 7134601 7134724 -275058940 + MIR SINE MIR 6 140 -68 412 211 128 51 chr1 7134853 7135009 -275058655 + MIR SINE MIR 95 262 0 797 249 86 20 chr1 7135492 7135737 -275057927 + MIR SINE MIR 2 262 0 2086 103 31 0 chr1 7136547 7136839 -275056825 + AluSp SINE Alu 1 301 -12 192 40 0 0 chr1 7136843 7136868 -275056796 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 265 306 174 15 chr1 7138378 7138574 -275055090 - L2 LINE L2 -898 2416 2190 28 0 0 0 chr1 7138999 7139027 -275054637 + GC_rich Low_complexity Low_complexity 1 28 0 412 188 188 62 chr1 7140318 7140446 -275053218 - L2 LINE L2 -2 3270 3127 367 309 216 10 chr1 7146310 7146504 -275047160 + MIR SINE MIR 17 250 -12 329 309 147 16 chr1 7146914 7147105 -275046559 - L2 LINE L2 -550 2764 2549 1926 100 0 45 chr1 7147762 7148071 -275045593 - AluSp SINE Alu -18 295 1 196 255 0 21 chr1 7148097 7148144 -275045520 + MIR SINE MIR 101 146 -62 2078 101 14 0 chr1 7148284 7148581 -275045083 - AluSx SINE Alu -11 301 1 2089 106 0 3 chr1 7148764 7149057 -275044607 + AluSq SINE Alu 1 292 -21 424 204 204 0 chr1 7149314 7149451 -275044213 - L1MD2 LINE L1 -1 6358 6194 2283 82 7 3 chr1 7149588 7149894 -275043770 + AluSp SINE Alu 1 307 -6 360 0 0 0 chr1 7149909 7149949 -275043715 + (GA)n Simple_repeat Simple_repeat 2 41 0 2261 81 0 3 chr1 7150089 7150386 -275043278 + AluSg SINE Alu 1 296 -14 2164 118 7 0 chr1 7151165 7151470 -275042194 + AluSx SINE Alu 1 307 -5 1854 91 84 0 chr1 7151470 7151744 -275041920 + AluSg1 SINE Alu 1 297 -12 236 29 0 29 chr1 7151744 7151778 -275041886 + (GGAA)n Simple_repeat Simple_repeat 1 33 0 2164 103 7 0 chr1 7154325 7154627 -275039037 + AluSx SINE Alu 1 304 -8 314 308 170 11 chr1 7155022 7155204 -275038460 + HAL1 LINE L1 820 1030 -1477 2030 121 14 0 chr1 7155204 7155501 -275038163 + AluSg SINE Alu 1 301 -9 1957 106 3 20 chr1 7155512 7155804 -275037860 + AluSc SINE Alu 9 295 -14 1762 79 64 19 chr1 7155808 7156109 -275037555 - AluSg SINE Alu 0 313 1 574 263 75 94 chr1 7156185 7156502 -275037162 + HAL1 LINE L1 1249 1557 -950 2116 114 0 13 chr1 7156502 7156819 -275036845 + AluSq SINE Alu 1 313 0 574 263 75 94 chr1 7156819 7156927 -275036737 + HAL1 LINE L1 1557 1666 -841 1914 129 0 10 chr1 7157064 7157359 -275036305 + AluSx SINE Alu 16 307 -5 22 0 0 0 chr1 7157420 7157442 -275036222 + AT_rich Low_complexity Low_complexity 1 22 0 716 101 0 0 chr1 7157442 7157541 -275036123 - L1MA2 LINE L1 0 6304 6206 22 56 0 0 chr1 7157571 7157607 -275036057 + AT_rich Low_complexity Low_complexity 1 36 0 1636 171 36 13 chr1 7157758 7158063 -275035601 + AluJb SINE Alu 1 312 0 1589 174 62 62 chr1 7158064 7158222 -275035442 + MSTD LTR MaLR 40 197 -199 2002 121 0 0 chr1 7158222 7158524 -275035140 - AluSx SINE Alu 0 302 1 1589 174 62 62 chr1 7158524 7158721 -275034943 + MSTD LTR MaLR 196 396 0 306 248 4 111 chr1 7158723 7158833 -275034831 + L1MEd LINE L1 895 970 -5149 2015 146 0 3 chr1 7158833 7159142 -275034522 + AluSx SINE Alu 1 308 -4 306 248 4 111 chr1 7159142 7159257 -275034407 + L1MEd LINE L1 970 1096 -5023 1641 98 43 35 chr1 7159257 7159513 -275034151 - MSTB1 LTR MaLR 0 432 175 2344 103 0 0 chr1 7159514 7159826 -275033838 + AluSx SINE Alu 1 312 0 711 173 43 7 chr1 7159834 7159973 -275033691 + L1MB5 LINE L1 5652 5795 -379 987 231 37 26 chr1 7159984 7160252 -275033412 + L1MB5 LINE L1 5904 6174 0 868 261 46 79 chr1 7160250 7160361 -275033303 + L1M4 LINE L1 3515 3628 -2518 * 2153 153 67 20 chr1 7160361 7160765 -275032899 + MSTB LTR MaLR 2 424 -2 868 261 46 79 chr1 7160765 7160792 -275032872 + L1M4 LINE L1 3628 3654 -2492 2182 88 0 3 chr1 7160792 7161089 -275032575 + AluY SINE Alu 1 296 -15 868 261 46 79 chr1 7161089 7161297 -275032367 + L1M4 LINE L1 3654 3844 -2302 2415 56 0 3 chr1 7161297 7161599 -275032065 + AluY SINE Alu 1 301 -10 868 261 46 79 chr1 7161599 7161732 -275031932 + L1M4 LINE L1 3844 3980 -2166 306 0 0 0 chr1 7161737 7161771 -275031893 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 305 167 0 0 chr1 7161774 7161828 -275031836 - Alu SINE Alu -5 297 244 599 178 24 21 chr1 7161847 7161988 -275031676 + MER34B LTR ERV1 1 142 -400 351 197 0 0 chr1 7161987 7162053 -275031611 + AluJ/FRAM SINE Alu 233 298 -4 * 752 211 3 6 chr1 7162128 7162407 -275031257 + GA-rich Low_complexity Low_complexity 1 278 0 223 70 23 23 chr1 7162429 7162472 -275031192 + (GAAA)n Simple_repeat Simple_repeat 4 46 0 2051 120 0 7 chr1 7162579 7162871 -275030793 + AluSx SINE Alu 12 301 -11 376 143 32 0 chr1 7162916 7162979 -275030685 + U6 snRNA snRNA 1 65 -42 3070 145 25 13 chr1 7162992 7163328 -275030336 + L1MB3 LINE L1 5321 5652 -531 1957 130 3 0 chr1 7163328 7163628 -275030036 + AluSx SINE Alu 1 301 -11 3070 145 25 13 chr1 7163628 7163978 -275029686 + L1MB3 LINE L1 5652 6182 -1 1208 133 0 122 chr1 7164009 7164272 -275029392 + AluJb SINE Alu 69 299 -13 2174 94 0 25 chr1 7164421 7164739 -275028925 - AluSq SINE Alu -3 310 1 2222 100 0 0 chr1 7165554 7165853 -275027811 + AluSq SINE Alu 1 299 -14 2213 104 0 3 chr1 7166211 7166519 -275027145 + AluSg SINE Alu 2 308 -2 1100 113 12 26 chr1 7166705 7167307 -275026357 + (ATGGTG)n Simple_repeat Simple_repeat 1 593 0 2110 114 0 3 chr1 7168718 7169017 -275024647 - AluSg SINE Alu -12 298 1 1801 138 17 14 chr1 7169042 7169338 -275024326 + AluSx SINE Alu 2 298 -14 1785 142 24 0 chr1 7169396 7169684 -275023980 + AluJb SINE Alu 1 295 -17 1787 144 17 7 chr1 7169684 7169983 -275023681 + AluSx SINE Alu 1 302 -10 2243 91 3 10 chr1 7170114 7170422 -275023242 + AluSx SINE Alu 1 306 -6 587 279 157 39 chr1 7170591 7171024 -275022640 + L2 LINE L2 2829 3312 -1 231 217 29 29 chr1 7171428 7171497 -275022167 - MLT1K LTR MaLR -495 93 25 1940 143 0 7 chr1 7171580 7171887 -275021777 - AluJo SINE Alu -7 305 1 207 255 85 66 chr1 7173956 7174062 -275019602 - L2 LINE L2 -841 2473 2366 211 213 0 0 chr1 7174203 7174250 -275019414 + L2 LINE L2 3221 3267 -5 673 81 101 0 chr1 7174409 7174508 -275019156 + HY1 scRNA scRNA 2 110 -2 2110 100 3 37 chr1 7175105 7175426 -275018238 + AluSx SINE Alu 1 310 -2 2260 86 0 0 chr1 7175434 7175736 -275017928 + AluY SINE Alu 1 302 -9 623 278 57 5 chr1 7175749 7175958 -275017706 + MER58A DNA MER1_type 5 224 0 274 174 113 42 chr1 7175960 7176031 -275017633 + MIR SINE MIR 40 117 -91 328 262 170 7 chr1 7176120 7176261 -275017403 - MIR SINE MIR -79 183 20 747 159 0 36 chr1 7176394 7176532 -275017132 + FLAM_C SINE Alu 11 143 0 2214 83 0 17 chr1 7177214 7177516 -275016148 - AluY SINE Alu -13 298 2 1608 189 0 3 chr1 7177590 7177876 -275015788 + AluJb SINE Alu 1 285 -27 808 154 114 50 chr1 7177945 7178165 -275015499 + L1MC1 LINE L1 6100 6333 0 465 292 31 42 chr1 7178230 7178490 -275015174 + L1MC4a LINE L1 5688 5944 -1864 1780 148 10 13 chr1 7178527 7178830 -275014834 - AluJb SINE Alu -10 302 1 1180 76 0 13 chr1 7178842 7178999 -275014665 + AluSg/x SINE Alu 144 298 -14 581 114 0 0 chr1 7179017 7179096 -275014568 + AluSg SINE Alu 2 80 -230 2222 97 0 3 chr1 7179096 7179406 -275014258 + AluSg SINE Alu 1 309 -1 1657 118 0 0 chr1 7179406 7179641 -275014023 + AluSg SINE Alu 73 309 -3 714 175 32 0 chr1 7179808 7179934 -275013730 + FLAM_C SINE Alu 2 131 -2 2235 67 0 0 chr1 7180372 7180680 -275012984 + AluY SINE Alu 1 308 0 21 36 0 0 chr1 7181532 7181560 -275012104 + AT_rich Low_complexity Low_complexity 1 28 0 2299 88 7 3 chr1 7182238 7182544 -275011120 + AluSq SINE Alu 1 307 -6 2384 61 0 0 chr1 7182750 7183044 -275010620 - AluY SINE Alu -17 294 1 1608 164 0 50 chr1 7183046 7183364 -275010300 - AluJo SINE Alu -10 302 1 1387 77 0 6 chr1 7183466 7183648 -275010016 - AluSx SINE Alu -12 298 118 1896 91 0 0 chr1 7183648 7183901 -275009763 - AluSq SINE Alu -1 312 60 301 146 427 0 chr1 7184250 7184332 -275009332 - Charlie1 DNA MER1_type -3 2758 2642 1849 110 10 40 chr1 7184336 7184635 -275009029 - AluSx SINE Alu -22 290 1 885 146 0 0 chr1 7184635 7184765 -275008899 - AluSx SINE Alu -177 135 6 338 60 0 20 chr1 7184767 7184817 -275008847 + MADE1 DNA Mariner 32 80 0 1454 159 31 31 chr1 7184922 7185212 -275008452 - AluJo SINE Alu -22 290 1 192 152 0 0 chr1 7185384 7185417 -275008247 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 2288 60 0 0 chr1 7185429 7185741 -275007923 - AluSq SINE Alu 0 312 1 1568 193 0 13 chr1 7187182 7187483 -275006181 - AluJo SINE Alu -15 297 1 2181 92 3 0 chr1 7187514 7187807 -275005857 + AluSg SINE Alu 1 294 -16 268 312 72 8 chr1 7188147 7188272 -275005392 + L1MC/D LINE L1 5727 5859 -1949 1895 154 0 3 chr1 7188575 7188873 -275004791 + AluSx SINE Alu 1 297 -15 2074 123 17 0 chr1 7189062 7189364 -275004300 - AluSg SINE Alu -3 307 1 1558 192 0 7 chr1 7189463 7189755 -275003909 - AluJo SINE Alu -22 290 1 4393 111 33 6 chr1 7189904 7190595 -275003069 + L1MA5A LINE L1 5587 6296 -1 1578 138 20 79 chr1 7190671 7190976 -275002688 - AluJo SINE Alu -25 287 1 820 203 48 0 chr1 7191403 7191590 -275002074 + AluJb SINE Alu 113 308 -4 288 260 0 0 chr1 7191686 7191759 -275001905 + (CCCA)n Simple_repeat Simple_repeat 3 75 0 187 312 117 0 chr1 7191759 7191836 -275001828 - L2 LINE L2 -19 3294 3209 913 176 0 0 chr1 7192150 7192298 -275001366 - FRAM SINE Alu -30 146 1 349 267 43 26 chr1 7192416 7192532 -275001132 - MER94 DNA DNA -16 118 1 483 285 130 36 chr1 7192590 7192867 -275000797 + L1MC/D LINE L1 5409 5711 -2097 733 233 158 0 chr1 7192978 7193180 -275000484 + MIR SINE MIR 8 241 -21 2101 106 7 3 chr1 7193279 7193572 -275000092 + AluSg1 SINE Alu 1 294 -15 1902 126 30 0 chr1 7193717 7194019 -274999645 + AluSx SINE Alu 1 311 -1 1576 164 39 4 chr1 7194033 7194314 -274999350 + AluJb SINE Alu 7 297 -15 21 0 0 0 chr1 7194630 7194651 -274999013 + AT_rich Low_complexity Low_complexity 1 21 0 181 213 75 150 chr1 7196183 7196263 -274997401 + L2 LINE L2 3222 3295 -18 1123 171 25 25 chr1 7196305 7196544 -274997120 - L1MA4 LINE L1 -8 6292 6054 754 83 148 0 chr1 7196544 7196652 -274997012 + MER84 LTR ERVI 1 124 -383 863 70 0 0 chr1 7196652 7196767 -274996897 - MER84-int LTR ERV1 -3598 1356 1242 1248 71 88 6 chr1 7196767 7196937 -274996727 + MER84 LTR ERVI 324 507 0 3796 137 83 27 chr1 7196946 7197309 -274996355 - L1MA4 LINE L1 -257 6043 5702 2000 138 3 0 chr1 7197309 7197614 -274996050 - AluSx SINE Alu -6 306 1 3796 137 83 27 chr1 7197614 7198201 -274995463 - L1MA4 LINE L1 -598 5702 5044 2071 116 7 0 chr1 7198201 7198511 -274995153 - AluSx SINE Alu 0 312 1 2248 115 0 0 chr1 7198540 7198852 -274994812 - AluSx SINE Alu 0 312 1 2186 91 0 7 chr1 7198905 7199202 -274994462 + AluSc SINE Alu 1 295 -14 2172 125 0 0 chr1 7199211 7199523 -274994141 - AluSx SINE Alu 0 312 1 24 0 0 0 chr1 7199609 7199633 -274994031 + AT_rich Low_complexity Low_complexity 1 24 0 1555 133 88 35 chr1 7199636 7199921 -274993743 + AluJo SINE Alu 2 301 -1 1912 109 28 7 chr1 7200195 7200478 -274993186 - AluSx SINE Alu -21 291 3 252 241 108 0 chr1 7200756 7200839 -274992825 + MLT1I LTR MaLR 46 137 -272 288 206 48 48 chr1 7200939 7201002 -274992662 + MLT1I LTR MaLR 240 302 -107 505 190 42 21 chr1 7201113 7201255 -274992409 - HAL1 LINE L1 -93 2414 2270 237 329 197 7 chr1 7201255 7201392 -274992272 - MIR SINE MIR -99 163 1 742 191 0 0 chr1 7201643 7201774 -274991890 - FLAM_A SINE Alu -2 131 1 2315 73 0 13 chr1 7202060 7202374 -274991290 + AluSq SINE Alu 1 310 -3 359 282 53 23 chr1 7202424 7202555 -274991109 + L2 LINE L2 3163 3297 -16 802 137 0 43 chr1 7203666 7203805 -274989859 - FLAM_C SINE Alu 0 133 1 2684 103 25 76 chr1 7203833 7204436 -274989228 - SVA Other Other -339 1047 476 5187 73 34 55 chr1 7204459 7205294 -274988370 - SVA Other Other -520 866 50 339 25 0 0 chr1 7205300 7205340 -274988324 + (GGGAGA)n Simple_repeat Simple_repeat 5 44 0 181 298 47 82 chr1 7205989 7206060 -274987604 + L2 LINE L2 2917 2989 -283 2304 91 3 0 chr1 7206060 7206369 -274987295 - AluSg SINE Alu 0 310 1 181 298 47 82 chr1 7206369 7206468 -274987196 + L2 LINE L2 2989 3081 -191 855 232 116 41 chr1 7206587 7206880 -274986784 - L2 LINE L2 -4 3309 2995 2260 84 0 0 chr1 7206881 7207178 -274986486 + AluSx SINE Alu 1 297 -15 824 225 78 45 chr1 7208342 7208586 -274985078 + MIR SINE MIR 2 253 -9 215 273 61 0 chr1 7208608 7208674 -274984990 + MIR SINE MIR 104 173 -89 2053 117 0 0 chr1 7208720 7209003 -274984661 - AluSx SINE Alu -29 283 1 189 354 73 0 chr1 7209059 7209141 -274984523 + MIR SINE MIR 175 262 0 1174 225 126 37 chr1 7209454 7209890 -274983774 + Charlie4a DNA MER1_type 27 501 -7 751 286 91 0 chr1 7209893 7210113 -274983551 + MIR SINE MIR 15 254 -8 180 296 0 0 chr1 7210279 7210323 -274983341 - L2 LINE L2 0 3313 3270 907 199 199 30 chr1 7210335 7210588 -274983076 - Zaphod DNA AcHobo -9 4022 3813 2191 98 0 0 chr1 7210588 7210883 -274982781 + AluSx SINE Alu 1 295 -17 907 199 199 30 chr1 7210883 7210995 -274982669 - Zaphod DNA AcHobo -218 3813 3595 * 990 224 98 35 chr1 7210993 7211484 -274982180 - Zaphod DNA AcHobo -3041 990 469 1393 125 5 5 chr1 7211486 7211702 -274981962 + AluJb SINE Alu 84 299 -13 667 248 159 37 chr1 7211760 7212087 -274981577 - Zaphod DNA AcHobo -3593 438 72 505 219 42 17 chr1 7212097 7212216 -274981448 + Zaphod DNA AcHobo 3905 4026 -5 180 125 0 0 chr1 7212778 7212810 -274980854 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 2280 86 0 10 chr1 7212812 7213126 -274980538 - AluY SINE Alu 0 311 1 21 0 0 0 chr1 7213200 7213221 -274980443 + AT_rich Low_complexity Low_complexity 1 21 0 1747 171 10 0 chr1 7213493 7213792 -274979872 - AluJb SINE Alu -10 302 1 378 282 99 50 chr1 7214425 7214606 -274979058 - MIR SINE MIR -14 248 59 315 0 0 0 chr1 7215150 7215185 -274978479 + (TCC)n Simple_repeat Simple_repeat 1 35 0 431 213 11 33 chr1 7215232 7215415 -274978249 + CT-rich Low_complexity Low_complexity 2 180 0 1648 123 82 10 chr1 7215428 7215759 -274977905 - AluSq SINE Alu 0 352 1 218 275 113 65 chr1 7215940 7216169 -274977495 + MIR SINE MIR 20 259 -3 679 228 132 0 chr1 7217633 7217800 -274975864 + MIR SINE MIR 68 256 -6 2320 87 0 0 chr1 7218055 7218354 -274975310 - AluSx SINE Alu -13 299 1 33 25 0 0 chr1 7219328 7219368 -274974296 + AT_rich Low_complexity Low_complexity 1 40 0 1508 150 70 28 chr1 7219929 7220216 -274973448 + AluJb SINE Alu 1 299 -13 762 214 46 100 chr1 7220467 7220747 -274972917 + MER5C DNA MER1_type 8 272 -52 1972 105 3 7 chr1 7220932 7221258 -274972406 - AluSq SINE Alu 0 325 1 314 288 137 7 chr1 7221433 7221572 -274972092 - MIR SINE MIR 0 262 106 1269 137 27 41 chr1 7221623 7221842 -274971822 - AluJo SINE Alu -90 222 7 281 311 39 10 chr1 7221851 7221954 -274971710 - MIR SINE MIR -150 112 7 2171 110 7 0 chr1 7222655 7222963 -274970701 - AluSg SINE Alu 0 310 1 1563 154 16 38 chr1 7222979 7223298 -274970366 - AluJo SINE Alu 0 312 1 2091 105 0 23 chr1 7223352 7223657 -274970007 - AluSx SINE Alu -14 298 1 1542 115 165 11 chr1 7223677 7223937 -274969727 - AluSg SINE Alu 0 300 1 825 186 32 50 chr1 7224338 7224559 -274969105 + MER20 DNA MER1_type 3 219 0 708 111 0 0 chr1 7224630 7224738 -274968926 + (TG)n Simple_repeat Simple_repeat 1 108 0 180 277 21 0 chr1 7224960 7225007 -274968657 + MIR SINE MIR 201 248 -14 2196 79 24 0 chr1 7225238 7225530 -274968134 - AluSp SINE Alu -14 299 1 1555 273 67 62 chr1 7225613 7226547 -274967117 - L1ME3A LINE L1 -30 6140 5188 1590 160 3 42 chr1 7226604 7226891 -274966773 - AluJo SINE Alu -11 301 26 482 114 29 0 chr1 7227043 7227113 -274966551 + tRNA-Glu-GAG tRNA tRNA 1 72 -3 2284 80 10 3 chr1 7227124 7227424 -274966240 + AluSq SINE Alu 1 302 -11 3682 221 70 14 chr1 7227444 7227791 -274965873 - L1MD2 LINE L1 -13 6740 6414 1320 147 184 109 chr1 7227791 7227925 -274965739 - MER65A LTR ERV1 0 445 322 2214 98 0 16 chr1 7227925 7228240 -274965424 + AluSx SINE Alu 1 310 -2 1320 147 184 109 chr1 7228240 7228458 -274965206 - MER65A LTR ERV1 -123 322 122 191 61 30 0 chr1 7228458 7228491 -274965173 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 1772 136 45 0 chr1 7228495 7228782 -274964882 - AluSx SINE Alu -12 300 1 1320 147 184 109 chr1 7228782 7228837 -274964827 - MER65A LTR ERV1 -325 120 1 3682 221 70 14 chr1 7228837 7229709 -274963955 - L1MD2 LINE L1 -339 6414 5398 999 125 0 7 chr1 7229712 7229864 -274963800 - AluJb SINE Alu -18 294 144 2285 152 28 54 chr1 7229874 7230303 -274963361 - LTR3 LTR ERVK -10 422 5 873 133 0 0 chr1 7230318 7230446 -274963218 - FLAM_C SINE Alu -11 132 5 1358 228 54 50 chr1 7230451 7230916 -274962748 - L1MD2 LINE L1 -1144 5396 4930 1721 148 19 0 chr1 7230917 7231181 -274962483 - Tigger3b DNA MER2_type 0 1231 963 2007 119 0 0 chr1 7231192 7231470 -274962194 + AluSx SINE Alu 2 279 -33 3599 104 2 4 chr1 7231470 7231950 -274961714 + MER1A DNA MER1_type 51 529 0 * 4739 129 38 32 chr1 7231950 7232076 -274961588 - Tigger3b DNA MER2_type -2195 833 709 1977 102 42 0 chr1 7232076 7232360 -274961304 - AluSq SINE Alu -17 296 1 4739 129 38 32 chr1 7232360 7232732 -274960932 - Tigger3b DNA MER2_type -2319 709 341 275 0 29 0 chr1 7232732 7232767 -274960897 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 1888 116 4 4 chr1 7232770 7233047 -274960617 - AluSx SINE Alu -35 277 1 369 0 0 0 chr1 7233056 7233097 -274960567 + (TA)n Simple_repeat Simple_repeat 2 42 0 4739 129 38 32 chr1 7233097 7233411 -274960253 - Tigger3b DNA MER2_type -2695 333 1 519 208 33 0 chr1 7233413 7233533 -274960131 - L1MD2 LINE L1 -1612 4928 4805 1639 165 3 14 chr1 7233542 7233833 -274959831 - AluJo SINE Alu -22 290 3 1633 250 63 39 chr1 7233835 7234191 -274959473 - L1MD2 LINE L1 -5515 1025 679 2279 101 0 0 chr1 7234191 7234497 -274959167 + AluSg SINE Alu 1 306 -4 1633 250 63 39 chr1 7234497 7234562 -274959102 - L1MD2 LINE L1 -5861 679 617 2045 133 0 0 chr1 7234562 7234862 -274958802 - AluSx SINE Alu -12 300 1 1633 250 63 39 chr1 7234862 7235029 -274958635 - L1MD2 LINE L1 -5923 617 122 2219 70 0 11 chr1 7235692 7236006 -274957658 - AluSg1 SINE Alu 0 311 1 2051 116 0 0 chr1 7236009 7236338 -274957326 - AluSq SINE Alu 0 329 1 1592 149 52 21 chr1 7236728 7237016 -274956648 - AluJb SINE Alu -15 297 1 904 138 14 0 chr1 7237678 7237816 -274955848 - FAM SINE Alu -28 157 18 1958 128 30 0 chr1 7237870 7238166 -274955498 - AluSx SINE Alu -7 305 1 369 313 23 31 chr1 7238166 7238294 -274955370 - MLT1I LTR MaLR -80 329 203 760 252 45 77 chr1 7238442 7238725 -274954939 - L1MC/D LINE L1 -746 5400 5315 1697 145 46 3 chr1 7238725 7239008 -274954656 + AluJb SINE Alu 1 295 -17 760 252 45 77 chr1 7239008 7239102 -274954562 - L1MC/D LINE L1 -831 5315 5219 1832 148 0 7 chr1 7239106 7239390 -274954274 + AluSq SINE Alu 1 282 -31 222 116 0 0 chr1 7239393 7239436 -274954228 + (TA)n Simple_repeat Simple_repeat 2 44 0 36 23 0 0 chr1 7239457 7239500 -274954164 + AT_rich Low_complexity Low_complexity 1 43 0 803 112 0 0 chr1 7239517 7239624 -274954040 - AluJb SINE Alu -201 111 5 1052 303 64 30 chr1 7239631 7240161 -274953503 - L1MC/D LINE L1 -922 5224 4665 2182 94 3 7 chr1 7240161 7240460 -274953204 + AluSx SINE Alu 1 298 -14 1052 303 64 30 chr1 7240460 7240599 -274953065 - L1MC/D LINE L1 -1481 4665 4532 2233 96 0 3 chr1 7241706 7242008 -274951656 + AluSx SINE Alu 4 304 -8 2164 123 0 0 chr1 7242018 7242328 -274951336 + AluSx SINE Alu 1 310 -2 1401 149 0 5 chr1 7242338 7242552 -274951112 + AluJb SINE Alu 85 297 -15 356 181 12 0 chr1 7243125 7243208 -274950456 + G-rich Low_complexity Low_complexity 2 85 0 1899 67 0 4 chr1 7243378 7243632 -274950032 + AluY SINE Alu 1 253 -58 192 97 0 0 chr1 7243632 7243663 -274950001 + (A)n Simple_repeat Simple_repeat 1 31 0 783 172 8 0 chr1 7243683 7243817 -274949847 + FLAM_C SINE Alu 9 143 0 1972 171 97 95 chr1 7243916 7244526 -274949138 - LTR36 LTR ERV1 0 611 1 1598 153 0 8 chr1 7244679 7244940 -274948724 + AluSx SINE Alu 44 302 -10 1904 125 90 39 chr1 7244940 7245275 -274948389 - MER101 LTR ERV1 -122 352 1 2330 61 7 0 chr1 7245474 7245771 -274947893 - AluSx SINE Alu -13 299 1 476 312 158 14 chr1 7245804 7246019 -274947645 + MIR SINE MIR 7 252 -10 1324 126 0 102 chr1 7246385 7246678 -274946986 + AluJo SINE Alu 47 309 -3 3534 120 47 34 chr1 7246686 7247304 -274946360 - MER39B LTR ERV1 -2 651 26 2131 89 28 3 chr1 7247478 7247769 -274945895 + AluSx SINE Alu 1 298 -14 2089 104 3 10 chr1 7247819 7248116 -274945548 - AluSx SINE Alu -4 308 14 21 0 0 0 chr1 7248122 7248143 -274945521 + AT_rich Low_complexity Low_complexity 1 21 0 928 92 0 0 chr1 7248160 7248279 -274945385 + THE1B LTR MaLR 1 119 -245 2012 103 50 0 chr1 7248301 7248583 -274945081 + AluSg SINE Alu 1 296 -14 1032 97 14 7 chr1 7248585 7248729 -274944935 + THE1B LTR MaLR 220 364 0 2003 111 16 29 chr1 7248911 7249076 -274944588 - AluSx SINE Alu -10 302 141 1872 128 17 0 chr1 7249076 7249372 -274944292 - AluSx SINE Alu -11 301 1 2003 111 16 29 chr1 7249372 7249512 -274944152 - AluSx SINE Alu -171 141 1 1235 185 65 45 chr1 7249734 7250026 -274943638 - AluJo SINE Alu -3 299 2 1762 144 17 17 chr1 7250124 7250423 -274943241 - AluSx SINE Alu -13 299 1 887 27 0 9 chr1 7250881 7250992 -274942672 + (TTTC)n Simple_repeat Simple_repeat 3 112 0 1528 158 3 67 chr1 7251686 7251856 -274941808 - MLT2D LTR ERVL -135 279 100 606 63 13 0 chr1 7251856 7251935 -274941729 + MADE1 DNA Mariner 1 80 0 1528 158 3 67 chr1 7251935 7251949 -274941715 - MLT2D LTR ERVL -314 100 87 2160 85 13 7 chr1 7251949 7252255 -274941409 + AluSp SINE Alu 1 308 -5 1528 158 3 67 chr1 7252255 7252367 -274941297 - MLT2D LTR ERVL -327 87 1 2225 96 3 0 chr1 7252466 7252769 -274940895 - AluSx SINE Alu -8 304 1 1555 154 0 42 chr1 7252891 7253176 -274940488 - AluJo SINE Alu -6 306 34 29 70 0 0 chr1 7253273 7253330 -274940334 + AT_rich Low_complexity Low_complexity 1 57 0 1766 134 10 10 chr1 7253703 7253988 -274939676 + AluSx SINE Alu 1 286 -21 191 61 30 0 chr1 7253988 7254021 -274939643 + (TTAA)n Simple_repeat Simple_repeat 1 34 0 722 219 3 0 chr1 7254050 7254374 -274939290 + GA-rich Low_complexity Low_complexity 1 324 0 186 43 0 0 chr1 7254380 7254403 -274939261 + (GGGA)n Simple_repeat Simple_repeat 3 25 0 215 361 37 9 chr1 7254502 7254610 -274939054 - MIR3 SINE MIR -21 187 77 697 142 50 8 chr1 7254672 7254792 -274938872 + AluJ SINE Alu 2 126 -186 376 320 12 17 chr1 7255362 7255534 -274938130 + L2 LINE L2 2818 2988 -325 193 214 24 0 chr1 7255560 7255602 -274938062 + L2 LINE L2 2313 2355 -959 431 151 35 47 chr1 7255673 7255759 -274937905 + MIR SINE MIR 120 204 -58 225 0 0 0 chr1 7255760 7255785 -274937879 + (CA)n Simple_repeat Simple_repeat 2 26 0 265 244 0 26 chr1 7255792 7255870 -274937794 + (TA)n Simple_repeat Simple_repeat 2 77 0 239 222 19 0 chr1 7255870 7255924 -274937740 + MIR SINE MIR 196 250 -12 453 285 94 43 chr1 7255968 7256203 -274937461 + L2 LINE L2 2425 2671 -643 811 302 14 14 chr1 7256226 7256577 -274937087 + L1M4 LINE L1 3340 3690 -2456 2006 124 0 13 chr1 7256598 7256897 -274936767 - AluSx SINE Alu -17 295 1 1714 174 7 7 chr1 7256972 7257277 -274936387 - AluJb SINE Alu -7 305 1 925 226 157 32 chr1 7257277 7257670 -274935994 + MLT1F1 LTR MaLR 28 546 -21 999 150 0 6 chr1 7257719 7257879 -274935785 + AluJ SINE Alu 136 294 -18 25 51 0 0 chr1 7257922 7257961 -274935703 + AT_rich Low_complexity Low_complexity 1 39 0 2193 180 78 32 chr1 7258062 7258132 -274935532 + LTR42 LTR ERVL 1 66 -429 2210 123 153 5 chr1 7258132 7258505 -274935159 + MSTA LTR MaLR 1 428 0 2193 180 78 32 chr1 7258505 7258650 -274935014 + LTR42 LTR ERVL 66 203 -292 2113 59 0 7 chr1 7258650 7258920 -274934744 + AluY SINE Alu 36 303 -8 2193 180 78 32 chr1 7258920 7259176 -274934488 + LTR42 LTR ERVL 203 495 0 1386 264 82 40 chr1 7259177 7259505 -274934159 + L1M4 LINE L1 4099 4412 -1734 2187 92 0 10 chr1 7259505 7259800 -274933864 + AluSq SINE Alu 1 292 -21 1386 264 82 40 chr1 7259800 7260191 -274933473 + L1M4 LINE L1 4412 4848 -1298 21 36 0 0 chr1 7260353 7260381 -274933283 + AT_rich Low_complexity Low_complexity 1 28 0 2106 105 0 7 chr1 7260394 7260689 -274932975 + AluSx SINE Alu 1 293 -19 34 24 0 0 chr1 7260792 7260833 -274932831 + AT_rich Low_complexity Low_complexity 1 41 0 231 211 18 0 chr1 7260994 7261051 -274932613 - L1 LINE L1 -2584 3562 3505 289 214 48 24 chr1 7261071 7261155 -274932509 - L1 LINE L1 -1143 5003 4918 2126 127 0 0 chr1 7261997 7262305 -274931359 - AluSq SINE Alu -5 308 1 613 125 0 0 chr1 7262453 7262541 -274931123 - AluJo/FRAM SINE Alu -22 290 203 1062 93 7 0 chr1 7262542 7262692 -274930972 - AluSg SINE Alu -159 151 1 183 357 0 0 chr1 7262726 7262796 -274930868 + MER5A DNA MER1_type 10 79 -110 1829 147 30 0 chr1 7262918 7263218 -274930446 + AluJb SINE Alu 1 309 -3 198 167 0 0 chr1 7263227 7263263 -274930401 + A-rich Low_complexity Low_complexity 1 36 0 229 341 35 12 chr1 7263384 7263469 -274930195 + MIR3 SINE MIR 13 99 -109 1428 153 81 0 chr1 7263872 7264161 -274929503 - AluJb SINE Alu 0 310 1 193 234 141 16 chr1 7264295 7264359 -274929305 - L2 LINE L2 -1 3271 3200 2214 192 24 34 chr1 7264413 7264605 -274929059 + MLT1D LTR MaLR 5 197 -308 1927 120 0 35 chr1 7264605 7264922 -274928742 + AluSx SINE Alu 1 306 -6 2214 192 24 34 chr1 7264922 7265235 -274928429 + MLT1D LTR MaLR 197 505 0 556 229 54 34 chr1 7265404 7265609 -274928055 - L1ME2 LINE L1 -78 6086 5878 1629 190 146 39 chr1 7265628 7265792 -274927872 - L1MA8 LINE L1 -2 6289 6144 626 0 0 13 chr1 7265792 7265867 -274927797 + (TTTC)n Simple_repeat Simple_repeat 3 76 0 1589 110 0 0 chr1 7265867 7266095 -274927569 - AluSx SINE Alu -31 281 54 1629 190 146 39 chr1 7266095 7266550 -274927114 - L1MA8 LINE L1 -146 6145 5590 853 182 0 24 chr1 7266579 7266744 -274926920 - AluJo SINE Alu -113 199 39 413 210 59 25 chr1 7266809 7266928 -274926736 - L1ME2 LINE L1 -409 5712 5590 459 108 0 0 chr1 7267250 7267315 -274926349 - AluSx SINE Alu -14 298 234 2159 82 0 3 chr1 7267315 7267607 -274926057 - AluY SINE Alu -20 291 1 1573 111 11 73 chr1 7267608 7267869 -274925795 - AluSx SINE Alu -67 245 1 1697 166 0 57 chr1 7267919 7268250 -274925414 - AluJb SINE Alu 0 312 1 477 277 48 32 chr1 7268344 7268532 -274925132 - MIR SINE MIR -44 218 28 256 311 261 23 chr1 7268518 7268824 -274924840 - L3 LINE CR1 -258 1319 941 * 1424 138 59 45 chr1 7269613 7269903 -274923761 - AluJb SINE Alu -7 305 12 2146 90 33 0 chr1 7270321 7270621 -274923043 - AluSg SINE Alu 0 310 1 224 118 0 59 chr1 7271454 7271505 -274922159 + (CCCCCA)n Simple_repeat Simple_repeat 5 52 0 216 312 13 52 chr1 7271459 7271613 -274922051 + (CCCCG)n Simple_repeat Simple_repeat 1 148 0 * 229 309 32 16 chr1 7271689 7271812 -274921852 + (CCCCG)n Simple_repeat Simple_repeat 5 129 0 991 129 11 0 chr1 7272227 7272405 -274921259 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 775 150 29 0 chr1 7272432 7272605 -274921059 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 191 179 24 36 chr1 7272618 7272702 -274920962 + (TGGA)n Simple_repeat Simple_repeat 4 86 0 2014 137 0 23 chr1 7272783 7273089 -274920575 + AluJb SINE Alu 1 299 -13 203 217 188 29 chr1 7273154 7273223 -274920441 - L2 LINE L2 -7 3306 3227 1145 139 414 0 chr1 7273223 7273314 -274920350 - Tigger1 DNA MER2_type 0 2418 2366 1584 94 115 0 chr1 7273314 7273549 -274920115 + AluSp SINE Alu 37 298 -15 1145 139 414 0 chr1 7273549 7273701 -274919963 - Tigger1 DNA MER2_type -52 2366 2074 15623 155 34 25 chr1 7273712 7275041 -274918623 - L1MDa LINE L1 -11 6686 5370 1573 189 0 0 chr1 7275041 7275337 -274918327 - AluJo SINE Alu -14 298 3 15623 155 34 25 chr1 7275337 7277111 -274916553 - L1MDa LINE L1 -1327 5370 3613 1685 157 0 20 chr1 7277111 7277405 -274916259 - AluJo SINE Alu -12 300 13 15623 155 34 25 chr1 7277405 7277632 -274916032 - L1MDa LINE L1 -3084 3613 3389 1757 174 0 0 chr1 7277632 7277933 -274915731 - AluSx SINE Alu 0 301 1 15623 155 34 25 chr1 7277933 7278679 -274914985 - L1MDa LINE L1 -3308 3389 2571 642 193 0 0 chr1 7278683 7278792 -274914872 - FLAM_A SINE Alu -16 126 18 4108 127 34 52 chr1 7278797 7279505 -274914159 - L1M2 LINE L1 -3960 3249 2555 2305 88 0 0 chr1 7279505 7279799 -274913865 - AluSg SINE Alu -16 294 1 4108 127 34 52 chr1 7279799 7279884 -274913780 - L1M2 LINE L1 -4654 2555 2470 2493 235 223 50 chr1 7279888 7280235 -274913429 - L1M2 LINE L1 -4860 2349 2063 2152 108 10 3 chr1 7280235 7280542 -274913122 - AluSc SINE Alu 0 309 1 2493 235 223 50 chr1 7280542 7281460 -274912204 - L1M2 LINE L1 -5146 2063 947 873 285 169 24 chr1 7281464 7281969 -274911695 - L1M2 LINE L1 -5601 1608 1111 2051 133 39 47 chr1 7281973 7282018 -274911646 - THE1C LTR MaLR 0 428 384 2460 64 0 0 chr1 7282018 7282329 -274911335 + AluY SINE Alu 1 311 0 2051 133 39 47 chr1 7282329 7282697 -274910967 - THE1C LTR MaLR -44 384 1 3600 185 100 3 chr1 7282697 7283417 -274910247 - L1M2 LINE L1 -6418 791 2 13088 124 18 25 chr1 7283467 7285062 -274908602 - Tigger1 DNA MER2_type -341 2077 499 2449 55 3 7 chr1 7285062 7285372 -274908292 - AluSc SINE Alu 0 309 1 13088 124 18 25 chr1 7285372 7285865 -274907799 - Tigger1 DNA MER2_type -1919 499 4 1621 219 119 30 chr1 7286096 7286593 -274907071 + MER90 LTR ERV1 74 614 0 1843 172 50 34 chr1 7286906 7287290 -274906374 - MLT1B LTR MaLR 0 390 1 191 263 121 30 chr1 7288167 7288266 -274905398 + MIR SINE MIR 45 152 -56 1603 155 129 35 chr1 7288312 7288654 -274905010 - MLT1A2 LTR MaLR 0 374 1 1617 191 15 61 chr1 7289412 7289491 -274904173 - MLT1B LTR MaLR 0 390 309 1998 109 3 0 chr1 7289491 7289797 -274903867 - AluSx SINE Alu 0 307 1 1617 191 15 61 chr1 7289797 7290125 -274903539 - MLT1B LTR MaLR -81 309 1 2124 120 0 0 chr1 7290222 7290531 -274903133 + AluSq SINE Alu 1 309 -4 1137 136 61 48 chr1 7291367 7291438 -274902226 + MLT1B LTR MaLR 1 70 -320 1644 164 20 10 chr1 7291438 7291736 -274901928 - AluJo SINE Alu -11 301 1 1137 136 61 48 chr1 7291736 7291892 -274901772 + MLT1B LTR MaLR 70 231 -159 833 141 36 123 chr1 7292462 7292513 -274901151 + MLT1B LTR MaLR 183 237 -153 1851 239 80 15 chr1 7292513 7293110 -274900554 - LTR48B LTR ERV1 -4 640 5 833 141 36 123 chr1 7293110 7293278 -274900386 + MLT1B LTR MaLR 237 383 -7 407 203 134 80 chr1 7293468 7293655 -274900009 + MLT1F1 LTR MaLR 366 562 -5 923 222 108 90 chr1 7293750 7293981 -274899683 - L2 LINE L2 0 3313 3088 2297 64 3 0 chr1 7293981 7294264 -274899400 + AluSp SINE Alu 1 284 -29 1299 13 0 0 chr1 7294264 7294413 -274899251 + (CAATA)n Simple_repeat Simple_repeat 2 150 0 923 222 108 90 chr1 7294413 7294558 -274899106 - L2 LINE L2 -224 3089 2929 2053 119 50 74 chr1 7294573 7294901 -274898763 + MSTB1 LTR MaLR 40 358 -74 597 77 0 0 chr1 7294901 7294979 -274898685 - MADE1 DNA Mariner -2 78 1 2053 119 50 74 chr1 7294979 7295053 -274898611 + MSTB1 LTR MaLR 358 432 0 2044 74 7 42 chr1 7295167 7295476 -274898188 + AluSx SINE Alu 1 298 -14 206 175 53 0 chr1 7295713 7295770 -274897894 + MIR SINE MIR 37 96 -166 621 273 33 0 chr1 7295871 7296054 -274897610 + L2 LINE L2 1711 1899 -1415 666 295 74 8 chr1 7296056 7296314 -274897350 + L2 LINE L2 2285 2559 -755 2004 136 3 0 chr1 7296330 7296631 -274897033 - AluSx SINE Alu -10 302 1 863 192 6 6 chr1 7296648 7296830 -274896834 + AluJo SINE Alu 127 308 -4 841 268 242 3 chr1 7296830 7297315 -274896349 + L2 LINE L2 2706 3311 -2 1751 151 0 4 chr1 7297385 7297664 -274896000 - AluJb SINE Alu -22 290 13 345 248 62 31 chr1 7297811 7297940 -274895724 + L2 LINE L2 2921 3053 -260 239 137 0 39 chr1 7298105 7298156 -274895508 + (TTAAA)n Simple_repeat Simple_repeat 2 50 0 1867 134 3 24 chr1 7298509 7298807 -274894857 + AluSx SINE Alu 1 292 -20 1777 163 10 0 chr1 7299521 7299815 -274893849 - AluJb SINE Alu -9 303 7 470 45 0 15 chr1 7300247 7300313 -274893351 + (TTCC)n Simple_repeat Simple_repeat 2 66 0 1948 118 0 0 chr1 7300334 7300613 -274893051 - AluSx SINE Alu -33 279 1 368 271 132 60 chr1 7300941 7301222 -274892442 + L2 LINE L2 3005 3305 -8 223 122 0 49 chr1 7301192 7301233 -274892431 - L2 LINE L2 0 3313 3275 * 1142 179 9 0 chr1 7301261 7301392 -274892272 + AluJo SINE Alu 1 137 -175 1383 195 28 21 chr1 7301392 7301709 -274891955 + AluJb SINE Alu 1 319 0 1142 179 9 0 chr1 7301709 7301794 -274891870 + AluJo SINE Alu 137 220 -92 1795 119 0 0 chr1 7301825 7302085 -274891579 - AluSq SINE Alu -48 265 6 330 169 60 12 chr1 7302095 7302178 -274891486 - L1M4 LINE L1 -946 5200 5114 * 1100 128 58 66 chr1 7302171 7302215 -274891449 - L1MA8 LINE L1 -11 6280 6237 2194 107 0 0 chr1 7302215 7302513 -274891151 - AluSq SINE Alu -15 298 1 231 36 0 0 chr1 7302516 7302544 -274891120 + (TTA)n Simple_repeat Simple_repeat 1 28 0 1100 128 58 66 chr1 7302544 7302738 -274890926 - L1MA8 LINE L1 -56 6235 6040 260 247 43 21 chr1 7302741 7302834 -274890830 - L1M4 LINE L1 -1023 5123 5029 1609 128 115 35 chr1 7302851 7303022 -274890642 - AluJb SINE Alu -1 311 106 2311 92 0 0 chr1 7303022 7303328 -274890336 - AluSg SINE Alu -4 306 1 1609 128 115 35 chr1 7303328 7303444 -274890220 - AluJb SINE Alu -206 106 1 319 284 157 41 chr1 7303470 7303667 -274889997 - L2 LINE L2 -564 2750 2531 409 267 82 20 chr1 7306905 7307051 -274886613 + MIR SINE MIR 105 259 -3 2213 101 0 0 chr1 7307123 7307421 -274886243 + AluSx SINE Alu 2 299 -13 2227 71 14 0 chr1 7307881 7308164 -274885500 + AluSq SINE Alu 1 287 -26 372 281 170 7 chr1 7308361 7308514 -274885150 + MER5A DNA MER1_type 12 189 0 1769 138 14 0 chr1 7308575 7308857 -274884807 + AluSx SINE Alu 1 286 -26 253 68 45 0 chr1 7308858 7308902 -274884762 + (CAATA)n Simple_repeat Simple_repeat 2 47 0 1789 129 37 0 chr1 7308933 7309225 -274884439 - AluJb SINE Alu 0 302 1 1626 188 10 0 chr1 7310036 7310368 -274883296 + AluSx SINE Alu 1 335 0 2308 63 10 3 chr1 7311002 7311304 -274882360 + AluY SINE Alu 1 304 -7 672 284 48 22 chr1 7311563 7311792 -274881872 + MIR SINE MIR 28 262 0 366 100 0 0 chr1 7311956 7312006 -274881658 + MER85 DNA T2_type 90 139 0 207 196 0 0 chr1 7313316 7313362 -274880302 + A-rich Low_complexity Low_complexity 1 46 0 2058 118 3 0 chr1 7314875 7315171 -274878493 - AluSg SINE Alu -13 297 1 1475 156 67 15 chr1 7315214 7315484 -274878180 + MER7A DNA MER2_type 1 282 -64 1691 160 65 7 chr1 7315693 7316000 -274877664 + L1M4c LINE L1 13 337 -6047 8602 152 51 29 chr1 7316003 7316141 -274877523 + L1M4c LINE L1 711 844 -5538 1565 96 13 22 chr1 7316141 7316371 -274877293 - MER30 DNA MER1_type -2 228 1 8602 152 51 29 chr1 7316371 7316488 -274877176 + L1M4c LINE L1 844 957 -5425 1620 157 52 0 chr1 7316488 7316775 -274876889 + AluJo SINE Alu 5 306 -6 1797 155 34 0 chr1 7316775 7317071 -274876593 + AluJo SINE Alu 1 307 -5 8602 152 51 29 chr1 7317071 7318619 -274875045 + L1M4c LINE L1 956 2556 -3826 1454 163 45 7 chr1 7318632 7318704 -274874960 + L1MB3 LINE L1 5882 5950 -233 1939 120 32 0 chr1 7318704 7318987 -274874677 + AluSx SINE Alu 13 304 -8 1454 163 45 7 chr1 7318987 7319202 -274874462 + L1MB3 LINE L1 5950 6180 -3 1418 139 46 8 chr1 7319353 7319591 -274874073 - AluJo SINE Alu -56 256 10 262 298 92 83 chr1 7320003 7320231 -274873433 + MIR SINE MIR 33 262 0 2000 115 7 3 chr1 7320913 7321201 -274872463 + AluSx SINE Alu 1 289 -23 1465 109 0 0 chr1 7321201 7321403 -274872261 + AluSg/x SINE Alu 106 307 -3 198 248 85 43 chr1 7321780 7321921 -274871743 + L2 LINE L2 723 869 -2445 376 353 147 9 chr1 7321987 7322449 -274871215 + L2 LINE L2 1026 1551 -1763 27 73 0 0 chr1 7322558 7322613 -274871051 + AT_rich Low_complexity Low_complexity 1 55 0 1658 171 7 14 chr1 7322634 7322940 -274870724 + AluJo SINE Alu 1 304 0 8809 211 92 22 chr1 7322958 7323172 -274870492 + L1ME1 LINE L1 1846 2043 -4172 2003 121 13 3 chr1 7323172 7323478 -274870186 + AluSx SINE Alu 1 309 -3 8809 211 92 22 chr1 7323478 7324390 -274869274 + L1ME1 LINE L1 2043 2889 -3326 984 189 6 0 chr1 7324390 7324554 -274869110 + FRAM SINE Alu 1 165 -1 8809 211 92 22 chr1 7324554 7324719 -274868945 + L1ME1 LINE L1 2889 3041 -3174 2050 128 0 3 chr1 7324719 7325025 -274868639 + AluSg SINE Alu 1 305 -5 8809 211 92 22 chr1 7325025 7326781 -274866883 + L1ME1 LINE L1 3041 5092 -1123 1316 222 33 3 chr1 7326788 7327090 -274866574 + L1ME1 LINE L1 5918 6228 -7 2651 165 77 0 chr1 7327610 7328076 -274865588 + Tigger7 DNA MER2_type 1 502 -231 1114 125 35 25 chr1 7328075 7328275 -274865389 + Tigger7 DNA MER2_type 2386 2587 0 * 404 299 52 15 chr1 7328453 7328587 -274865077 - L2 LINE L2 -6 3307 3169 * 541 296 77 0 chr1 7328571 7328767 -274864897 - MIR SINE MIR -50 212 2 820 107 25 16 chr1 7331349 7331470 -274862194 - AluSc SINE Alu -56 253 132 2252 129 3 0 chr1 7331471 7331782 -274861882 - AluSq SINE Alu -1 312 1 360 308 61 20 chr1 7331795 7332042 -274861622 - L1MC4a LINE L1 -1837 5971 5715 231 100 0 0 chr1 7332069 7332109 -274861555 - L1MA4 LINE L1 -3 6297 6258 596 204 107 51 chr1 7332284 7332500 -274861164 + L1MEc LINE L1 40 267 -6129 * 1672 212 39 16 chr1 7332489 7332876 -274860788 + L1MEc LINE L1 470 865 -5531 602 201 67 7 chr1 7332882 7333031 -274860633 + L1M4 LINE L1 4630 4787 -1359 * 2553 242 107 30 chr1 7333027 7333730 -274859934 - L1MEc LINE L1 -2907 3308 2660 2408 73 3 23 chr1 7333730 7334031 -274859633 - AluSp SINE Alu -18 295 1 2553 242 107 30 chr1 7334031 7334314 -274859350 - L1MEc LINE L1 -3555 2660 2400 1530 193 3 47 chr1 7334314 7334615 -274859049 - AluJo SINE Alu -24 288 1 2553 242 107 30 chr1 7334615 7334810 -274858854 - L1MEc LINE L1 -3815 2400 2089 2326 85 10 0 chr1 7334839 7335133 -274858531 + AluSx SINE Alu 1 297 -15 840 176 15 0 chr1 7335137 7335268 -274858396 - FLAM_C SINE Alu -10 133 1 230 355 0 50 chr1 7335313 7335454 -274858210 + MIR SINE MIR 19 152 -110 231 320 10 0 chr1 7336003 7336100 -274857564 + MIR SINE MIR 159 256 -6 301 229 0 36 chr1 7336454 7336537 -274857127 - MIR SINE MIR 0 262 183 1617 113 4 9 chr1 7337481 7337712 -274855952 + MER30 DNA MER1_type 1 230 0 300 250 64 58 chr1 7338211 7338367 -274855297 + L1MC4a LINE L1 5790 5946 -1862 700 239 49 22 chr1 7338553 7338737 -274854927 + MER3 DNA MER1_type 7 195 -14 284 350 107 0 chr1 7338749 7338946 -274854718 - L2 LINE L2 -1143 2171 1954 1216 206 164 62 chr1 7339063 7339639 -274854025 - L1MC4a LINE L1 0 7808 7159 2758 231 175 37 chr1 7339659 7340978 -274852686 - L1MD3 LINE L1 -747 6194 5972 282 150 0 0 chr1 7340978 7341018 -274852646 - 5S rRNA rRNA -79 42 3 272 222 56 0 chr1 7341023 7341095 -274852569 - L1MD3 LINE L1 -962 5979 5904 * 1191 241 104 14 chr1 7341083 7341374 -274852290 - L1MD3 LINE L1 -2884 4057 3711 2326 86 3 25 chr1 7341374 7341688 -274851976 - AluY SINE Alu -4 307 1 1191 241 104 14 chr1 7341688 7341836 -274851828 - L1MD3 LINE L1 -3230 3711 3578 1866 245 188 38 chr1 7341837 7342264 -274851400 - L1MD3 LINE L1 -3675 3266 2904 586 179 80 0 chr1 7342264 7342376 -274851288 - FLAM_A SINE Alu -12 121 1 1866 245 188 38 chr1 7342376 7343873 -274849791 - L1MD3 LINE L1 -4037 2904 994 308 304 73 16 chr1 7343914 7344105 -274849559 - L1MD3 LINE L1 -6210 213 12 2652 49 3 0 chr1 7344742 7345047 -274848617 - AluY SINE Alu -5 306 1 1220 218 26 95 chr1 7345585 7345975 -274847689 + MLT1A1 LTR MaLR 1 363 -2 206 283 0 0 chr1 7346625 7346671 -274846993 + (TTA)n Simple_repeat Simple_repeat 3 48 0 194 244 0 0 chr1 7349081 7349126 -274844538 - L2 LINE L2 -12 3260 3216 2448 100 0 0 chr1 7349132 7349441 -274844223 - AluSx SINE Alu -3 309 1 181 264 36 55 chr1 7349530 7349640 -274844024 - MIR SINE MIR -153 109 2 339 294 87 33 chr1 7349693 7349877 -274843787 - MIR SINE MIR -62 200 7 576 285 21 11 chr1 7350165 7350351 -274843313 + L2 LINE L2 3126 3313 0 233 160 0 20 chr1 7350527 7350577 -274843087 + (TATATG)n Simple_repeat Simple_repeat 2 50 0 1981 131 0 27 chr1 7350578 7350875 -274842789 - AluJo SINE Alu -12 300 12 312 333 76 8 chr1 7351269 7351401 -274842263 + L2 LINE L2 3171 3311 -2 2202 116 3 0 chr1 7352224 7352518 -274841146 + AluSx SINE Alu 1 295 -17 1819 159 3 10 chr1 7352692 7352993 -274840671 + AluJb SINE Alu 3 301 -11 250 249 135 21 chr1 7353070 7353263 -274840401 - L1ME4a LINE L1 -65 6056 5842 2147 118 3 0 chr1 7353796 7354085 -274839579 - AluSx SINE Alu -22 290 1 462 293 27 14 chr1 7354535 7354682 -274838982 + MER5A DNA MER1_type 18 166 -23 2292 109 0 7 chr1 7354827 7355130 -274838534 + AluSx SINE Alu 1 301 -11 25 0 0 0 chr1 7355427 7355452 -274838212 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr1 7356025 7356048 -274837616 + AT_rich Low_complexity Low_complexity 1 23 0 1252 122 0 0 chr1 7356540 7356712 -274836952 - AluSg/x SINE Alu -5 307 136 2035 93 57 4 chr1 7356895 7357175 -274836489 + AluSx SINE Alu 2 296 -16 1826 156 3 29 chr1 7357324 7357632 -274836032 + AluJo SINE Alu 11 310 -2 2428 68 7 23 chr1 7357761 7358068 -274835596 - AluSq SINE Alu -10 303 2 340 308 121 26 chr1 7359660 7359730 -274833934 + L2 LINE L2 1225 1287 -2027 2465 87 0 3 chr1 7359730 7360039 -274833625 - AluSx SINE Alu -4 308 1 340 308 121 26 chr1 7360039 7360241 -274833423 + L2 LINE L2 1287 1523 -1791 720 282 115 27 chr1 7360244 7360574 -274833090 + L2 LINE L2 2187 2545 -769 310 29 0 0 chr1 7360574 7360609 -274833055 + U2 snRNA snRNA 1 35 -153 239 235 37 0 chr1 7360664 7360745 -274832919 + L2 LINE L2 2605 2688 -626 2158 123 13 0 chr1 7360777 7361077 -274832587 + AluSx SINE Alu 1 304 -8 1111 245 21 24 chr1 7361089 7361379 -274832285 + L1MC4 LINE L1 6703 6991 -1051 351 294 8 84 chr1 7361409 7361647 -274832017 + L1MC5 LINE L1 7709 7928 -33 653 270 101 50 chr1 7361716 7362160 -274831504 + L2 LINE L2 2837 3303 -10 251 233 0 22 chr1 7362455 7362545 -274831119 + (TATAA)n Simple_repeat Simple_repeat 3 90 0 23 33 0 0 chr1 7362714 7362744 -274830920 + AT_rich Low_complexity Low_complexity 1 30 0 2211 106 0 20 chr1 7362882 7363185 -274830479 - AluSc SINE Alu -12 297 1 2634 77 41 6 chr1 7364950 7365312 -274828352 + THE1C LTR MaLR 1 375 0 10315 112 39 9 chr1 7365312 7366846 -274826818 + THE1C-int LTR MaLR 1 1580 0 2655 91 19 16 chr1 7366846 7367220 -274826444 + THE1C LTR MaLR 1 375 0 200 360 47 0 chr1 7367334 7367420 -274826244 + L2 LINE L2 3178 3267 -5 537 184 43 43 chr1 7367676 7367781 -274825883 + L1MB2 LINE L1 6026 6133 -38 2425 116 11 27 chr1 7367781 7368151 -274825513 - THE1B LTR MaLR 0 364 1 537 184 43 43 chr1 7368151 7368186 -274825478 + L1MB2 LINE L1 6132 6166 -5 24 0 0 0 chr1 7368233 7368257 -274825407 + AT_rich Low_complexity Low_complexity 1 24 0 2149 116 3 16 chr1 7368467 7368770 -274824894 - AluSx SINE Alu -13 299 1 2491 45 3 0 chr1 7371130 7371417 -274822247 - AluY SINE Alu -23 288 1 210 248 0 40 chr1 7372973 7373074 -274820590 + (CCCG)n Simple_repeat Simple_repeat 4 100 0 22 80 0 0 chr1 7373105 7373155 -274820509 + GC_rich Low_complexity Low_complexity 1 50 0 23 0 0 0 chr1 7373247 7373270 -274820394 + GC_rich Low_complexity Low_complexity 1 23 0 437 250 33 33 chr1 7373559 7373739 -274819925 + G-rich Low_complexity Low_complexity 1 180 0 1711 161 28 14 chr1 7374067 7374358 -274819306 - AluSx SINE Alu -17 295 1 256 271 146 58 chr1 7374744 7375073 -274818591 - L2 LINE L2 -3 3310 2953 210 305 57 9 chr1 7375324 7375429 -274818235 - L2 LINE L2 -433 2881 2772 614 231 139 24 chr1 7378137 7378167 -274815497 - MIR SINE MIR -26 236 211 2543 71 0 0 chr1 7378167 7378478 -274815186 - AluY SINE Alu 0 311 1 614 231 139 24 chr1 7378478 7378509 -274815155 - MIR SINE MIR -51 211 185 189 0 0 0 chr1 7378509 7378530 -274815134 + (CAAA)n Simple_repeat Simple_repeat 3 23 0 614 231 139 24 chr1 7378530 7378675 -274814989 - MIR SINE MIR -77 185 5 1659 134 119 11 chr1 7378842 7379111 -274814553 - AluJo SINE Alu -14 298 1 2055 116 0 14 chr1 7380281 7380575 -274813089 + AluSx SINE Alu 1 290 -22 2715 201 42 8 chr1 7380676 7381289 -274812375 + L1MB5 LINE L1 3937 4570 -1576 4340 181 55 8 chr1 7381290 7381743 -274811921 + L1MB5 LINE L1 4721 5151 -1023 2213 110 3 3 chr1 7381743 7382053 -274811611 + AluSq SINE Alu 1 310 -3 4340 181 55 8 chr1 7382053 7382999 -274810665 + L1MB5 LINE L1 5151 6174 0 2260 102 3 3 chr1 7384480 7384785 -274808879 - AluSq SINE Alu -8 305 1 181 197 30 91 chr1 7384953 7385019 -274808645 + L2 LINE L2 3179 3240 -32 368 275 176 6 chr1 7385145 7385327 -274808337 - MIR SINE MIR -48 214 2 213 279 22 29 chr1 7386087 7386223 -274807441 + (CGGGG)n Simple_repeat Simple_repeat 4 138 0 23 0 0 0 chr1 7389416 7389439 -274804225 + AT_rich Low_complexity Low_complexity 1 23 0 207 0 0 0 chr1 7390316 7390339 -274803325 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 300 111 0 0 chr1 7390770 7390815 -274802849 + (TG)n Simple_repeat Simple_repeat 2 46 0 2485 57 3 3 chr1 7391346 7391646 -274802018 - AluY SINE Alu -11 300 1 2339 94 0 3 chr1 7392418 7392715 -274800949 - AluSx SINE Alu -16 296 1 24 0 0 0 chr1 7393166 7393190 -274800474 + AT_rich Low_complexity Low_complexity 1 24 0 512 331 97 6 chr1 7394189 7394364 -274799300 - MIR SINE MIR -55 207 17 1407 187 8 12 chr1 7395258 7395509 -274798155 - AluJo SINE Alu -48 264 15 813 145 17 0 chr1 7398217 7398360 -274795304 - AluJb SINE Alu 0 308 164 2600 46 0 0 chr1 7398436 7398738 -274794926 - AluY SINE Alu -9 302 1 1841 92 114 7 chr1 7399636 7399907 -274793757 - AluSg SINE Alu -10 300 1 1128 221 18 9 chr1 7399983 7400200 -274793464 + MER58A DNA MER1_type 6 224 0 22 56 0 0 chr1 7400458 7400494 -274793170 + AT_rich Low_complexity Low_complexity 1 36 0 1817 160 4 0 chr1 7400516 7400825 -274792839 - AluJo SINE Alu 0 310 1 2441 91 0 3 chr1 7402039 7402348 -274791316 - AluSx SINE Alu -4 308 1 1705 102 16 20 chr1 7405445 7405689 -274787975 + MER75B DNA T2_type 1 243 0 327 284 89 0 chr1 7408374 7408509 -274785155 + MIR SINE MIR 101 251 -11 535 205 116 9 chr1 7408996 7409108 -274784556 - FLAM_A SINE Alu -9 124 1 315 0 0 0 chr1 7409118 7409153 -274784511 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2363 88 3 0 chr1 7409180 7409485 -274784179 + AluSx SINE Alu 1 306 -6 2199 112 3 10 chr1 7410455 7410758 -274782906 + AluSx SINE Alu 1 301 -11 805 196 0 0 chr1 7410967 7411105 -274782559 + L1MB4 LINE L1 6036 6173 -7 2312 97 3 3 chr1 7411849 7412148 -274781516 - AluSx SINE Alu -13 299 1 219 229 0 49 chr1 7412565 7412626 -274781038 - L3 LINE CR1 -3 1574 1517 2357 102 0 0 chr1 7412960 7413263 -274780401 + AluSx SINE Alu 1 303 -9 2580 64 0 3 chr1 7413265 7413577 -274780087 + AluY SINE Alu 1 311 0 1031 269 70 18 chr1 7413727 7414077 -274779587 + L1MB8 LINE L1 5808 6177 -1 240 132 0 0 chr1 7414104 7414142 -274779522 + L1MB7 LINE L1 6138 6175 -9 25 31 0 0 chr1 7414205 7414237 -274779427 + AT_rich Low_complexity Low_complexity 1 32 0 1713 136 0 79 chr1 7414238 7414554 -274779110 + AluSx SINE Alu 1 291 -21 206 164 15 45 chr1 7414968 7415035 -274778629 + (TA)n Simple_repeat Simple_repeat 2 66 0 205 216 0 0 chr1 7415242 7415279 -274778385 + (TA)n Simple_repeat Simple_repeat 1 37 0 202 270 0 34 chr1 7415299 7415388 -274778276 + T-rich Low_complexity Low_complexity 5 90 0 25 0 0 0 chr1 7415422 7415447 -274778217 + AT_rich Low_complexity Low_complexity 1 25 0 672 112 0 0 chr1 7415456 7415539 -274778125 + AluY SINE Alu 2 85 -221 1676 113 0 17 chr1 7415539 7415779 -274777885 - AluSq SINE Alu -77 236 1 2467 55 3 0 chr1 7415817 7416110 -274777554 - AluY SINE Alu -17 294 1 337 172 0 0 chr1 7416643 7416701 -274776963 - Charlie5 DNA MER1_type -2504 108 51 914 245 46 9 chr1 7416986 7417202 -274776462 + MER58A DNA MER1_type 1 224 0 620 76 0 0 chr1 7417261 7417340 -274776324 + THE1B LTR MaLR 1 79 -285 617 89 0 0 chr1 7417359 7417438 -274776226 + THE1B LTR MaLR 1 79 -285 592 65 26 0 chr1 7417457 7417534 -274776130 + THE1B LTR MaLR 1 79 -285 2351 119 39 33 chr1 7417553 7417914 -274775750 + THE1B LTR MaLR 1 363 -1 866 131 46 0 chr1 7421187 7421317 -274772347 + AluJb SINE Alu 1 136 -176 1958 136 7 16 chr1 7421317 7421627 -274772037 + AluJb SINE Alu 1 307 -5 840 120 0 0 chr1 7421919 7422036 -274771628 - AluSx SINE Alu -2 307 191 935 118 15 0 chr1 7422040 7422176 -274771488 - AluSx SINE Alu -174 138 1 2192 104 7 0 chr1 7423145 7423442 -274770222 + AluSx SINE Alu 1 299 -13 1915 159 0 25 chr1 7424166 7424480 -274769184 - AluJb SINE Alu -6 306 1 22 35 0 0 chr1 7425287 7425316 -274768348 + AT_rich Low_complexity Low_complexity 1 29 0 1533 158 68 32 chr1 7425510 7425788 -274767876 - AluJb SINE Alu -24 288 1 2247 126 0 0 chr1 7425791 7426100 -274767564 - AluSg SINE Alu -1 309 1 258 130 14 29 chr1 7426393 7426462 -274767202 + (TA)n Simple_repeat Simple_repeat 2 69 0 189 0 0 0 chr1 7426462 7426483 -274767181 + (GA)n Simple_repeat Simple_repeat 2 22 0 2119 108 3 11 chr1 7426490 7426777 -274766887 - AluSx SINE Alu -27 285 1 216 266 123 39 chr1 7426999 7427153 -274766511 - L2 LINE L2 -360 2954 2788 * 470 218 135 53 chr1 7427118 7427288 -274766376 + MIR SINE MIR 35 218 -44 618 262 14 7 chr1 7427564 7427709 -274765955 - MIR SINE MIR -10 252 107 2175 113 13 10 chr1 7427976 7428277 -274765387 + AluSx SINE Alu 1 302 -10 255 182 141 81 chr1 7429803 7429902 -274763762 - L2 LINE L2 0 3313 3209 2679 47 0 0 chr1 7429970 7430270 -274763394 + AluY SINE Alu 1 300 -11 705 177 152 0 chr1 7431564 7431728 -274761936 - MER5A DNA MER1_type 0 189 1 472 208 82 19 chr1 7432374 7432549 -274761115 + MIR SINE MIR 13 202 -57 2310 73 45 0 chr1 7432554 7432841 -274760823 - AluY SINE Alu -11 300 1 3026 202 142 94 chr1 7432932 7433273 -274760391 - L1MC3 LINE L1 -3 7782 7459 2191 107 3 27 chr1 7433273 7433572 -274760092 + AluSx SINE Alu 1 292 -20 3026 202 142 94 chr1 7433572 7433812 -274759852 - L1MC3 LINE L1 -326 7459 7232 308 286 24 0 chr1 7433812 7433896 -274759768 - MLT1F1 LTR MaLR -447 120 35 3026 202 142 94 chr1 7433896 7434454 -274759210 - L1MC3 LINE L1 -553 7232 6500 757 139 0 31 chr1 7434461 7434590 -274759074 - FLAM_C SINE Alu -7 126 2 1018 102 0 0 chr1 7435480 7435607 -274758057 + AluSq/x SINE Alu 3 129 -183 387 119 0 0 chr1 7435607 7435666 -274757998 + Alu SINE Alu 242 300 0 542 293 129 0 chr1 7435934 7436159 -274757505 - MIR SINE MIR 0 262 9 236 173 269 0 chr1 7436250 7436302 -274757362 + L2 LINE L2 3191 3256 -57 2275 121 3 0 chr1 7436716 7437022 -274756642 + AluSx SINE Alu 6 312 0 2058 125 3 3 chr1 7438548 7438837 -274754827 + AluSx SINE Alu 14 302 -10 194 216 0 0 chr1 7439109 7439146 -274754518 - L2 LINE L2 -4 3309 3273 206 284 15 15 chr1 7439185 7439252 -274754412 - L2 LINE L2 -20 3252 3186 407 319 0 9 chr1 7439351 7439467 -274754197 + L2 LINE L2 3156 3270 -2 1962 133 66 3 chr1 7439642 7439928 -274753736 - AluJb SINE Alu -8 304 1 429 227 36 0 chr1 7439933 7440043 -274753621 - L1MA8 LINE L1 -1 6290 6177 2697 207 16 0 chr1 7440099 7440644 -274753020 - L1MA8 LINE L1 -118 6173 5620 2065 119 14 14 chr1 7441411 7441704 -274751960 + AluSx SINE Alu 1 293 -19 2389 120 8 6 chr1 7443168 7443526 -274750138 + THE1B LTR MaLR 1 359 -5 1782 181 7 0 chr1 7443614 7443906 -274749758 + AluJb SINE Alu 1 294 -18 1586 166 61 32 chr1 7444859 7445203 -274748461 + MLT1A1 LTR MaLR 1 354 -11 730 274 106 64 chr1 7445218 7445606 -274748058 + MLT1K LTR MaLR 4 415 -61 2025 144 0 10 chr1 7445606 7445904 -274747760 - AluJo SINE Alu -5 307 13 730 274 106 64 chr1 7445904 7445967 -274747697 + MLT1K LTR MaLR 415 474 -2 495 199 130 15 chr1 7446256 7446387 -274747277 + MER112 DNA MER1_type 2 147 -113 201 343 57 0 chr1 7446447 7446517 -274747147 - MIR SINE MIR -86 122 49 959 172 12 18 chr1 7447722 7447882 -274745782 - AluJo/FRAM SINE Alu -16 296 136 2087 156 0 0 chr1 7447882 7448183 -274745481 - AluJb SINE Alu -11 301 1 1973 122 4 4 chr1 7448571 7448842 -274744822 + AluJb SINE Alu 17 287 -25 2383 93 3 0 chr1 7449048 7449348 -274744316 + AluSg SINE Alu 1 301 -9 44 46 0 0 chr1 7450658 7450723 -274742941 + GC_rich Low_complexity Low_complexity 1 65 0 1223 173 90 61 chr1 7451919 7452110 -274741554 - AluJb SINE Alu -9 303 99 1983 128 29 0 chr1 7452110 7452404 -274741260 + AluSq SINE Alu 1 302 0 1223 173 90 61 chr1 7452404 7452489 -274741175 - AluJb SINE Alu -213 99 18 474 204 62 0 chr1 7452489 7452602 -274741062 + MIR SINE MIR 45 164 -98 321 153 176 0 chr1 7452918 7453049 -274740615 - AluSg/x SINE Alu 0 302 149 205 226 0 65 chr1 7453179 7453241 -274740423 + L2 LINE L2 3207 3264 -8 198 0 0 0 chr1 7453436 7453458 -274740206 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2051 131 13 29 chr1 7454070 7454376 -274739288 + AluJb SINE Alu 1 301 -11 268 372 0 0 chr1 7454553 7454639 -274739025 - MIR SINE MIR -121 141 56 489 184 0 0 chr1 7454746 7454833 -274738831 - AluJb SINE Alu -16 296 210 936 230 107 47 chr1 7454938 7455320 -274738344 + MLT1I LTR MaLR 3 407 -2 620 210 52 19 chr1 7455477 7456614 -274737050 + L1MB8 LINE L1 4864 6173 -11 307 176 92 114 chr1 7457186 7457317 -274736347 + MIR3 SINE MIR 30 157 -51 1423 130 18 0 chr1 7457322 7457545 -274736119 - MER30 DNA MER1_type 0 230 4 250 296 23 23 chr1 7457763 7457851 -274735813 + MLT1H LTR MaLR 454 541 -8 322 273 117 31 chr1 7458261 7458389 -274735275 + MIR SINE MIR 9 147 -115 23 0 0 0 chr1 7459206 7459229 -274734435 + AT_rich Low_complexity Low_complexity 1 23 0 2217 113 7 3 chr1 7459231 7459540 -274734124 + AluSg SINE Alu 1 310 0 328 188 0 31 chr1 7461642 7461706 -274731958 + MER77 LTR ERV1 54 115 -490 1504 217 84 13 chr1 7461886 7462278 -274731386 + MER77 LTR ERV1 179 598 -7 2028 131 50 34 chr1 7462348 7462706 -274730958 + THE1B LTR MaLR 1 364 0 216 149 0 0 chr1 7463227 7463274 -274730390 + (TTCA)n Simple_repeat Simple_repeat 1 47 0 377 85 0 17 chr1 7463769 7463828 -274729836 + (TCCC)n Simple_repeat Simple_repeat 1 58 0 214 274 116 0 chr1 7463828 7463923 -274729741 - L2 LINE L2 -9 3263 3158 189 74 0 0 chr1 7464006 7464033 -274729631 + (TC)n Simple_repeat Simple_repeat 2 28 0 476 325 160 23 chr1 7464242 7464842 -274728822 + L2 LINE L2 2585 3270 -2 192 275 50 12 chr1 7464926 7465006 -274728658 + MIR SINE MIR 6 88 -174 2326 87 0 17 chr1 7465595 7465893 -274727771 - AluSq SINE Alu -16 297 5 215 308 165 0 chr1 7465975 7466108 -274727556 + MIR3 SINE MIR 3 157 -51 2203 110 7 17 chr1 7466180 7466481 -274727183 - AluJb SINE Alu -14 298 1 2223 116 0 16 chr1 7466490 7466793 -274726871 - AluSq SINE Alu -15 298 1 2295 109 20 0 chr1 7467630 7467934 -274725730 + AluSx SINE Alu 1 310 -2 180 319 96 0 chr1 7468489 7468583 -274725081 + L2 LINE L2 2874 2976 -338 1111 332 97 23 chr1 7468596 7469828 -274723836 + L2 LINE L2 1965 3297 -16 902 235 79 59 chr1 7471187 7471579 -274722085 + MLT1C LTR MaLR 59 458 -9 2461 64 0 35 chr1 7472743 7473056 -274720608 - AluY SINE Alu -9 302 1 265 240 170 10 chr1 7474684 7474784 -274718880 - L2 LINE L2 -3 3269 3154 198 0 0 0 chr1 7475062 7475084 -274718580 + (CTG)n Simple_repeat Simple_repeat 1 22 0 22 0 0 0 chr1 7475406 7475428 -274718236 + GC_rich Low_complexity Low_complexity 1 22 0 242 277 213 0 chr1 7478958 7479052 -274714612 + L2 LINE L2 3198 3311 -2 319 258 205 7 chr1 7480183 7480334 -274713330 + L2 LINE L2 2449 2629 -685 666 302 67 57 chr1 7480504 7481167 -274712497 + L2 LINE L2 2624 3309 -4 2101 112 18 0 chr1 7481194 7481510 -274712154 - AluSx SINE Alu 0 312 1 194 248 66 109 chr1 7482066 7482203 -274711461 + L2 LINE L2 3142 3272 0 258 220 64 37 chr1 7482664 7482773 -274710891 - MIR SINE MIR -67 141 30 2135 126 7 0 chr1 7483290 7483591 -274710073 + AluSx SINE Alu 5 307 -5 336 307 60 13 chr1 7484047 7484197 -274709467 - L2 LINE L2 0 3272 3116 291 159 76 53 chr1 7484442 7484574 -274709090 + LTR33 LTR ERVL 22 156 -365 296 218 0 0 chr1 7484838 7484893 -274708771 - MIR SINE MIR -68 140 86 256 259 83 19 chr1 7486814 7486922 -274706742 + MIR SINE MIR 16 130 -78 422 18 18 0 chr1 7487563 7487618 -274706046 + (TG)n Simple_repeat Simple_repeat 2 57 0 198 329 98 18 chr1 7487745 7487909 -274705755 - MIR3 SINE MIR -6 202 26 207 148 0 74 chr1 7488546 7488600 -274705064 - MIR3 SINE MIR -49 159 110 2052 123 0 0 chr1 7488818 7489134 -274704530 + AluSq SINE Alu 1 316 0 2469 82 7 3 chr1 7489815 7490121 -274703543 - AluSq SINE Alu -6 307 1 1678 200 0 3 chr1 7490275 7490575 -274703089 - AluJb SINE Alu -13 299 1 200 214 18 0 chr1 7492669 7492725 -274700939 + (CA)n Simple_repeat Simple_repeat 2 58 0 2063 131 6 10 chr1 7493996 7494308 -274699356 - AluSx SINE Alu -1 311 1 2305 116 7 0 chr1 7494338 7494648 -274699016 - AluSx SINE Alu 0 312 1 1764 164 0 50 chr1 7494651 7494969 -274698695 - AluJo SINE Alu -10 302 1 1431 93 0 6 chr1 7495067 7495250 -274698414 - AluSx SINE Alu -11 301 120 1971 91 4 0 chr1 7495250 7495502 -274698162 - AluSq SINE Alu -1 312 60 278 146 427 0 chr1 7495851 7495933 -274697731 - Charlie1 DNA MER1_type -3 2758 2642 1964 114 10 40 chr1 7495937 7496236 -274697428 - AluSx SINE Alu -22 290 1 953 146 0 0 chr1 7496236 7496366 -274697298 - AluSx SINE Alu -178 135 6 311 65 0 0 chr1 7496372 7496418 -274697246 + MADE1 DNA Mariner 35 80 0 1593 159 31 31 chr1 7496523 7496813 -274696851 - AluJo SINE Alu -22 290 1 192 152 0 0 chr1 7496985 7497018 -274696646 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 2417 60 0 0 chr1 7497030 7497342 -274696322 - AluSq SINE Alu 0 312 1 1719 193 0 13 chr1 7498783 7499084 -274694580 - AluJo SINE Alu -15 297 1 2322 92 3 0 chr1 7499115 7499408 -274694256 + AluSg SINE Alu 1 294 -16 254 312 72 8 chr1 7499748 7499873 -274693791 + L1MC/D LINE L1 5727 5859 -1949 2063 156 0 10 chr1 7500176 7500490 -274693174 + AluSx SINE Alu 1 311 -1 2228 125 16 0 chr1 7500659 7500964 -274692700 - AluSg SINE Alu 0 310 1 1719 188 0 7 chr1 7501063 7501355 -274692309 - AluJo SINE Alu -22 290 1 4382 111 33 6 chr1 7501504 7502195 -274691469 + L1MA5A LINE L1 5587 6296 -1 1726 143 19 76 chr1 7502262 7502576 -274691088 - AluJo SINE Alu -16 296 1 945 198 48 0 chr1 7503003 7503190 -274690474 + AluJb SINE Alu 113 308 -4 277 260 0 0 chr1 7503286 7503359 -274690305 + (CCCA)n Simple_repeat Simple_repeat 3 75 0 184 312 117 0 chr1 7503359 7503436 -274690228 - L2 LINE L2 -19 3294 3209 983 176 0 0 chr1 7503750 7503898 -274689766 - FRAM SINE Alu -30 146 1 326 267 43 26 chr1 7504016 7504132 -274689532 - MER94 DNA DNA -16 118 1 431 332 98 4 chr1 7504190 7504467 -274689197 + L1MC/D LINE L1 5409 5711 -2097 734 233 158 0 chr1 7504578 7504780 -274688884 + MIR SINE MIR 8 241 -21 2238 106 7 3 chr1 7504879 7505171 -274688493 + AluSg1 SINE Alu 1 293 -16 2008 128 30 3 chr1 7505316 7505620 -274688044 + AluSx SINE Alu 1 312 0 1711 164 39 4 chr1 7505634 7505915 -274687749 + AluJb SINE Alu 7 297 -15 21 0 0 0 chr1 7506231 7506252 -274687412 + AT_rich Low_complexity Low_complexity 1 21 0 180 213 75 150 chr1 7507784 7507864 -274685800 + L2 LINE L2 3222 3295 -18 1120 171 25 25 chr1 7507906 7508145 -274685519 - L1MA4 LINE L1 -8 6292 6054 711 83 148 0 chr1 7508145 7508253 -274685411 + MER84 LTR ERVI 1 124 -383 823 70 0 0 chr1 7508253 7508368 -274685296 - MER84-int LTR ERV1 -3598 1356 1242 1172 71 88 6 chr1 7508368 7508538 -274685126 + MER84 LTR ERVI 324 507 0 3527 139 83 27 chr1 7508547 7508910 -274684754 - L1MA4 LINE L1 -257 6043 5702 2142 141 3 0 chr1 7508910 7509215 -274684449 - AluSx SINE Alu -6 306 1 3527 139 83 27 chr1 7509215 7509802 -274683862 - L1MA4 LINE L1 -598 5702 5044 2228 117 7 0 chr1 7509802 7510111 -274683553 - AluSx SINE Alu -1 311 1 2414 115 0 0 chr1 7510138 7510450 -274683214 - AluSx SINE Alu 0 312 1 230 238 181 29 chr1 7512045 7512150 -274681514 + L2 LINE L2 3190 3310 -3 2008 148 3 3 chr1 7513031 7513336 -274680328 + AluJb SINE Alu 1 305 -7 576 298 137 24 chr1 7513515 7513807 -274679857 + L2 LINE L2 2989 3313 0 270 317 36 3 chr1 7513819 7513942 -274679722 + MIR SINE MIR 6 140 -68 412 211 128 51 chr1 7514071 7514227 -274679437 + MIR SINE MIR 95 262 0 824 249 86 20 chr1 7514710 7514955 -274678709 + MIR SINE MIR 2 262 0 2242 102 31 0 chr1 7515765 7516058 -274677606 + AluSp SINE Alu 1 302 -11 192 40 0 0 chr1 7516062 7516087 -274677577 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 274 306 174 15 chr1 7517597 7517793 -274675871 - L2 LINE L2 -898 2416 2190 27 0 0 0 chr1 7518218 7518245 -274675419 + GC_rich Low_complexity Low_complexity 1 27 0 411 188 188 62 chr1 7519537 7519665 -274673999 - L2 LINE L2 -2 3270 3127 363 309 216 10 chr1 7525530 7525724 -274667940 + MIR SINE MIR 17 250 -12 340 309 147 16 chr1 7526134 7526325 -274667339 - L2 LINE L2 -550 2764 2549 2073 100 0 45 chr1 7526982 7527291 -274666373 - AluSp SINE Alu -18 295 1 197 255 0 21 chr1 7527317 7527364 -274666300 + MIR SINE MIR 101 146 -62 2155 122 17 0 chr1 7527504 7527800 -274665864 - AluSx SINE Alu -11 301 1 1271 170 38 88 chr1 7527807 7528125 -274665539 - LTR9 LTR ERV1 -310 302 1 589 206 112 93 chr1 7528137 7528544 -274665120 + LTR48 LTR ERV1 173 787 0 1965 97 7 71 chr1 7528677 7529000 -274664664 + AluSx SINE Alu 1 280 -32 2042 111 0 28 chr1 7529359 7529678 -274663986 - AluSx SINE Alu 0 311 1 595 182 10 0 chr1 7529678 7529777 -274663887 - FLAM_A SINE Alu -8 134 35 436 141 33 11 chr1 7529786 7529878 -274663786 - AluSc SINE Alu -14 295 202 232 139 0 0 chr1 7629878 7629914 -274563750 - FLAM_A SINE Alu -96 36 1 319 79 0 111 chr1 7629914 7629977 -274563687 + L1MA8 LINE L1 6125 6180 -111 2323 91 0 0 chr1 7629990 7630276 -274563388 + AluY SINE Alu 1 286 -25 233 294 12 24 chr1 7630416 7630501 -274563163 - MLT1K LTR MaLR -494 94 11 2309 98 0 0 chr1 7630508 7630805 -274562859 + AluSx SINE Alu 1 297 -15 963 94 16 0 chr1 7630961 7631088 -274562576 - FRAM SINE Alu -30 146 18 1587 176 39 33 chr1 7631231 7631538 -274562126 + AluJb SINE Alu 1 309 -3 1273 157 0 32 chr1 7631553 7631770 -274561894 + AluJo SINE Alu 1 210 -102 1429 84 0 31 chr1 7631786 7631977 -274561687 - AluSq SINE Alu -52 261 77 889 143 27 27 chr1 7631979 7632126 -274561538 + AluJo/FRAM SINE Alu 156 302 -10 793 117 14 34 chr1 7632179 7632619 -274561045 + (TG)n Simple_repeat Simple_repeat 1 431 0 967 76 45 7 chr1 7632637 7633269 -274560395 + (TG)n Simple_repeat Simple_repeat 1 831 0 739 208 79 82 chr1 7633269 7633727 -274559937 - MLT2B1 LTR ERVL -40 449 1 739 293 18 71 chr1 7633797 7634094 -274559570 - ERVL LTR ERVL -2577 3187 2913 2501 78 0 0 chr1 7634094 7634403 -274559261 + AluSg SINE Alu 1 309 -1 739 293 18 71 chr1 7634403 7634487 -274559177 - ERVL LTR ERVL -2851 2913 2826 2514 58 0 0 chr1 7634611 7634904 -274558760 + AluY SINE Alu 1 293 -18 1854 148 11 0 chr1 7634903 7635181 -274558483 - AluJb SINE Alu -31 281 1 * 1521 155 0 0 chr1 7636227 7636453 -274557211 - AluJb SINE Alu -9 303 78 1904 112 94 0 chr1 7637065 7637342 -274556322 + AluSx SINE Alu 1 303 -9 304 181 24 0 chr1 7637441 7637524 -274556140 + (TA)n Simple_repeat Simple_repeat 2 86 0 303 28 0 0 chr1 7637575 7637611 -274556053 + (CA)n Simple_repeat Simple_repeat 2 37 0 938 159 62 46 chr1 7637620 7637918 -274555746 + MER21A LTR ERV1 34 356 -507 2139 103 0 0 chr1 7637942 7638215 -274555449 + AluSx SINE Alu 25 297 -15 1836 146 25 0 chr1 7638268 7638542 -274555122 - AluJb SINE Alu -31 281 1 2522 86 0 0 chr1 7639548 7639861 -274553803 + AluSq SINE Alu 1 313 0 295 308 75 51 chr1 7639870 7640084 -274553580 - L2 LINE L2 -530 2784 2566 1787 147 40 3 chr1 7640652 7640952 -274552712 + AluJb SINE Alu 1 311 -1 2511 70 0 3 chr1 7641417 7641718 -274551946 + AluSp SINE Alu 1 300 -13 1204 113 24 0 chr1 7641718 7641886 -274551778 + AluSp SINE Alu 134 305 -8 2709 94 13 8 chr1 7642039 7642412 -274551252 + THE1C LTR MaLR 1 375 0 3631 109 73 23 chr1 7642755 7642785 -274550879 + LTR24C LTR ERV1 1 28 -607 828 99 7 92 chr1 7642785 7642926 -274550738 + FLAM_C SINE Alu 5 133 0 3631 109 73 23 chr1 7642926 7643498 -274550166 + LTR24C LTR ERV1 28 633 -2 2290 103 0 3 chr1 7643572 7643874 -274549790 + AluSq SINE Alu 1 301 -12 385 136 61 0 chr1 7644022 7644088 -274549576 - Charlie4 DNA MER1_type -5 1956 1887 2106 103 17 3 chr1 7644095 7644386 -274549278 + AluSc SINE Alu 1 295 -14 1042 84 15 0 chr1 7644386 7644517 -274549147 + AluSq/x SINE Alu 1 133 -180 1869 126 27 33 chr1 7644632 7644933 -274548731 - AluSx SINE Alu -13 299 1 1978 135 17 7 chr1 7644962 7645258 -274548406 + AluY SINE Alu 1 299 -12 780 68 0 0 chr1 7645717 7645820 -274547844 + (TTCC)n Simple_repeat Simple_repeat 3 105 0 484 173 0 17 chr1 7646017 7646116 -274547548 - L1MC4 LINE L1 0 8042 7848 207 319 87 0 chr1 7646188 7646257 -274547407 + MIR SINE MIR 71 145 -63 1094 168 84 26 chr1 7646427 7646653 -274547011 - AluJb SINE Alu -2 310 72 205 350 150 0 chr1 7647384 7647484 -274546180 + L2 LINE L2 3123 3237 -35 186 43 0 0 chr1 7647857 7647880 -274545784 + (T)n Simple_repeat Simple_repeat 1 23 0 2317 95 0 10 chr1 7647980 7648284 -274545380 - AluSc SINE Alu -6 303 3 483 33 0 0 chr1 7648597 7648658 -274545006 + (TG)n Simple_repeat Simple_repeat 2 62 0 414 0 0 0 chr1 7648722 7648768 -274544896 + (TG)n Simple_repeat Simple_repeat 1 46 0 2130 127 7 0 chr1 7649077 7649377 -274544287 + AluSx SINE Alu 1 302 -10 2266 64 0 0 chr1 7649378 7649645 -274544019 + AluY SINE Alu 38 304 -7 2030 154 28 11 chr1 7650092 7650448 -274543216 - THE1B LTR MaLR 0 364 3 1925 156 0 13 chr1 7653005 7653306 -274540358 + AluJb SINE Alu 1 297 -15 1420 221 7 29 chr1 7653585 7653893 -274539771 + AluJo SINE Alu 1 301 -1 445 168 262 54 chr1 7654198 7654347 -274539317 - MER58B DNA MER1_type 0 341 162 284 134 34 84 chr1 7654836 7654955 -274538709 + A-rich Low_complexity Low_complexity 4 116 0 1892 143 10 13 chr1 7655221 7655521 -274538143 - AluJo SINE Alu -13 299 1 21 0 0 0 chr1 7655721 7655742 -274537922 + AT_rich Low_complexity Low_complexity 1 21 0 403 272 7 51 chr1 7656136 7656293 -274537371 + MIR SINE MIR 49 197 -65 388 239 111 0 chr1 7656581 7656698 -274536966 + MER5C DNA MER1_type 1 130 -194 2703 100 0 14 chr1 7656765 7657134 -274536530 - THE1B LTR MaLR 0 364 1 274 161 32 48 chr1 7657233 7657295 -274536369 - MLT1J LTR MaLR -450 61 1 721 189 0 0 chr1 7657670 7657792 -274535872 - FLAM_C SINE Alu -16 127 6 1829 151 0 20 chr1 7657825 7658130 -274535534 + AluJb SINE Alu 1 299 -13 183 80 0 0 chr1 7658943 7658968 -274534696 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 1974 220 53 19 chr1 7660256 7660729 -274532935 - LTR42 LTR ERVL 0 495 7 211 262 213 16 chr1 7660735 7660857 -274532807 + L2 LINE L2 3168 3313 0 2050 137 3 3 chr1 7660940 7661239 -274532425 - AluSx SINE Alu -13 299 1 2150 134 0 0 chr1 7661249 7661555 -274532109 - AluSx SINE Alu -6 306 1 455 217 25 17 chr1 7662270 7662390 -274531274 + L2 LINE L2 3193 3313 0 336 275 75 8 chr1 7663080 7663200 -274530464 - MIR SINE MIR -112 150 23 318 218 137 48 chr1 7663905 7664029 -274529635 - L1ME3A LINE L1 0 6170 6036 2116 247 96 50 chr1 7664168 7665191 -274528473 - L1MC5 LINE L1 -431 7530 6476 2009 128 10 7 chr1 7665232 7665529 -274528135 - AluSx SINE Alu -12 300 3 1520 181 40 14 chr1 7665845 7666121 -274527543 - AluJo SINE Alu -27 285 3 42 20 0 0 chr1 7666679 7666728 -274526936 + AT_rich Low_complexity Low_complexity 1 49 0 1221 117 6 0 chr1 7667657 7667828 -274525836 - AluSq SINE Alu -12 301 130 961 162 56 178 chr1 7667862 7668183 -274525481 + AluJo SINE Alu 1 282 -30 21 36 0 0 chr1 7668183 7668211 -274525453 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr1 7668436 7668459 -274525205 + AT_rich Low_complexity Low_complexity 1 23 0 1120 213 138 27 chr1 7668657 7669368 -274524296 + L1ME1 LINE L1 4826 5621 -543 1370 141 89 56 chr1 7669405 7669674 -274523990 + AluJb SINE Alu 11 288 -24 319 189 0 40 chr1 7669698 7669772 -274523892 + L1ME2 LINE L1 5978 6048 -116 2088 122 7 7 chr1 7670372 7670675 -274522989 - AluSx SINE Alu -9 303 1 2018 126 14 0 chr1 7672290 7672584 -274521080 - AluSx SINE Alu -14 298 1 23 33 0 0 chr1 7673160 7673190 -274520474 + AT_rich Low_complexity Low_complexity 1 30 0 2349 63 23 3 chr1 7673206 7673508 -274520156 - AluY SINE Alu -2 309 2 522 308 100 21 chr1 7673510 7673750 -274519914 - L1MC5 LINE L1 -2147 5661 5403 1207 249 84 40 chr1 7674171 7674708 -274518956 - L1MC4 LINE L1 -113 7695 7244 1383 158 83 18 chr1 7674708 7674834 -274518830 + AluJo SINE Alu 5 121 -191 252 0 0 0 chr1 7674834 7674862 -274518802 + (TA)n Simple_repeat Simple_repeat 2 29 0 1383 158 83 18 chr1 7674862 7675013 -274518651 + AluJo SINE Alu 121 300 -12 1207 249 84 40 chr1 7675013 7675097 -274518567 - L1MC4 LINE L1 -564 7244 7165 476 235 95 40 chr1 7675105 7675305 -274518359 - L1MC4 LINE L1 -958 7084 6874 877 259 114 21 chr1 7675469 7675801 -274517863 - L1ME3A LINE L1 -10 6160 5798 2146 55 0 12 chr1 7675801 7676056 -274517608 + AluY SINE Alu 52 303 -8 775 257 32 48 chr1 7676056 7676291 -274517373 + L1M4 LINE L1 2722 2952 -3194 1992 132 14 0 chr1 7676291 7676580 -274517084 + AluJb SINE Alu 1 293 -19 775 257 32 48 chr1 7676580 7676659 -274517005 + L1M4 LINE L1 2952 3031 -3115 422 358 59 4 chr1 7676775 7677029 -274516635 + L1ME1 LINE L1 5680 5947 -223 485 242 17 50 chr1 7677662 7677782 -274515882 + L2 LINE L2 3182 3297 -16 560 146 62 31 chr1 7678145 7678275 -274515389 + L1ME1 LINE L1 6027 6160 -6 1367 170 77 64 chr1 7679698 7680037 -274513627 + Charlie1b DNA MER1_type 57 405 -2356 2357 86 16 0 chr1 7680037 7680340 -274513324 - AluSc SINE Alu -1 308 1 1367 170 77 64 chr1 7680340 7680454 -274513210 + Charlie1b DNA MER1_type 405 516 -7 1715 209 0 0 chr1 7680491 7680787 -274512877 - AluJo SINE Alu -16 296 1 198 296 136 0 chr1 7681348 7681473 -274512191 - L3 LINE CR1 -710 867 726 325 96 19 180 chr1 7681479 7681636 -274512028 - MLT2B3 LTR ERVL 0 554 393 1284 196 151 16 chr1 7681636 7682013 -274511651 - MSTC LTR MaLR 0 428 1 * 2228 197 23 7 chr1 7682013 7682447 -274511217 - MLT2B3 LTR ERVL -107 447 7 190 235 0 39 chr1 7682577 7682628 -274511036 - MIR3 SINE MIR -32 176 128 2192 105 3 0 chr1 7683309 7683605 -274510059 + AluY SINE Alu 1 297 -14 2362 98 0 0 chr1 7683753 7684058 -274509606 - AluSg1 SINE Alu -4 305 1 2206 99 0 13 chr1 7684667 7684971 -274508693 - AluSq SINE Alu -11 302 3 2529 181 87 12 chr1 7685056 7685526 -274508138 - L1MA7 LINE L1 0 6291 5759 543 69 0 0 chr1 7685526 7685598 -274508066 + (CA)n Simple_repeat Simple_repeat 2 73 0 2529 181 87 12 chr1 7685598 7685769 -274507895 - L1MA7 LINE L1 -532 5759 5602 452 162 253 0 chr1 7685872 7685971 -274507693 + Tigger4(Zombi) DNA MER2_type 1 124 -2607 1242 114 5 5 chr1 7685974 7686175 -274507489 + Tigger4(Zombi) DNA MER2_type 2531 2731 0 1027 157 67 17 chr1 7687713 7687920 -274505744 + AluJo SINE Alu 96 311 0 740 188 91 23 chr1 7688314 7688490 -274505174 - MIR SINE MIR -54 208 21 323 324 153 0 chr1 7689701 7689877 -274503787 - MIR SINE MIR -6 256 54 1106 171 23 14 chr1 7690008 7690224 -274503440 + MER20 DNA MER1_type 1 218 -1 372 107 18 0 chr1 7690426 7690482 -274503182 - MER34C LTR ERV1 -492 93 37 1463 87 0 0 chr1 7691093 7691278 -274502386 - AluSp SINE Alu -6 307 123 2185 114 3 13 chr1 7691299 7691614 -274502050 + AluSx SINE Alu 1 312 0 290 305 28 21 chr1 7693148 7693289 -274500375 - MIR3 SINE MIR -53 155 14 205 205 0 0 chr1 7693329 7693368 -274500296 + T-rich Low_complexity Low_complexity 1 39 0 336 193 0 0 chr1 7694247 7694304 -274499360 + AluJ/FLAM SINE Alu 1 57 -245 274 270 27 18 chr1 7694363 7694474 -274499190 + L1MC4 LINE L1 7914 8025 -17 1070 195 69 8 chr1 7695014 7695275 -274498389 - MER58 DNA MER1_type -2140 280 4 1983 162 26 0 chr1 7695690 7695993 -274497671 - AluJo SINE Alu -1 311 1 2079 107 3 30 chr1 7696203 7696502 -274497162 - AluSx SINE Alu -21 291 1 219 286 79 0 chr1 7698618 7698681 -274494983 - MIR SINE MIR -161 101 34 2355 83 0 3 chr1 7699550 7699873 -274493791 + AluSx SINE Alu 1 312 0 6027 239 100 29 chr1 7700203 7701396 -274492268 - L1MC4a LINE L1 -1 7807 6700 2124 114 0 7 chr1 7701396 7701695 -274491969 - AluSg1 SINE Alu -12 297 1 6027 239 100 29 chr1 7701695 7702872 -274490792 - L1MC4a LINE L1 -1108 6700 5269 382 305 58 13 chr1 7702894 7703048 -274490616 - L1MC4a LINE L1 -913 5233 5073 256 273 76 30 chr1 7703273 7703471 -274490193 - L1P LINE L1 -1488 4658 4452 2168 127 13 0 chr1 7703524 7703832 -274489832 - AluSx SINE Alu 0 312 1 205 0 54 54 chr1 7704080 7704117 -274489547 + (TTTTTA)n Simple_repeat Simple_repeat 2 38 0 1723 189 30 0 chr1 7704119 7704415 -274489249 + AluJb SINE Alu 3 307 -5 2276 113 0 3 chr1 7704415 7704715 -274488949 + AluSg SINE Alu 1 299 -11 44 0 0 0 chr1 7704715 7704759 -274488905 + AT_rich Low_complexity Low_complexity 1 44 0 238 304 108 0 chr1 7704854 7704956 -274488708 + Charlie2a DNA MER1_type 16 128 -2654 517 296 101 20 chr1 7705039 7705384 -274488280 + Charlie2a DNA MER1_type 262 634 -2228 1155 201 145 15 chr1 7705653 7706047 -274487617 - L1ME2 LINE L1 -24 6140 5696 333 132 9 0 chr1 7706167 7706223 -274487441 + L1M4 LINE L1 3773 3832 -2314 337 218 135 23 chr1 7706320 7706453 -274487211 + L1M4 LINE L1 4020 4167 -1979 812 190 71 16 chr1 7706619 7706803 -274486861 + MER20 DNA MER1_type 26 219 0 453 183 11 21 chr1 7707282 7707329 -274486335 + MER3 DNA MER1_type 2 47 -162 391 204 7 120 chr1 7707329 7707471 -274486193 - MER3 DNA MER1_type 0 209 84 929 176 7 0 chr1 7707592 7707740 -274485924 + AluJo SINE Alu 1 149 -163 638 186 0 25 chr1 7707740 7707858 -274485806 - AluJb SINE Alu -197 115 1 240 35 0 0 chr1 7709236 7709265 -274484399 + (TG)n Simple_repeat Simple_repeat 2 30 0 1599 147 0 63 chr1 7709985 7710285 -274483379 + AluJb SINE Alu 1 281 -31 235 0 57 0 chr1 7710293 7710328 -274483336 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 2245 116 3 3 chr1 7710694 7711004 -274482660 + AluSg SINE Alu 1 310 0 803 287 40 12 chr1 7712812 7713140 -274480524 + MER46C DNA MER2_type 2 338 0 1650 191 0 3 chr1 7713178 7713476 -274480188 - AluJb SINE Alu -14 298 2 324 272 48 16 chr1 7714049 7714174 -274479490 + MIR SINE MIR 31 159 -103 2428 71 0 0 chr1 7714276 7714572 -274479092 - AluSc SINE Alu -13 296 1 217 286 0 0 chr1 7714596 7714645 -274479019 + CT-rich Low_complexity Low_complexity 3 51 0 1592 218 102 54 chr1 7714883 7715241 -274478423 - L1MC4 LINE L1 -149 7893 7491 640 186 0 161 chr1 7715241 7715440 -274478224 - FAM SINE Alu -8 167 1 1592 218 102 54 chr1 7715440 7715706 -274477958 - L1MC4 LINE L1 -551 7491 7239 613 262 87 12 chr1 7715707 7716116 -274477548 - L1MC4 LINE L1 -961 7081 6469 409 328 64 23 chr1 7716799 7717064 -274476600 + L1MEd LINE L1 538 813 -5306 418 286 135 33 chr1 7717074 7717319 -274476345 - MLT1J LTR MaLR -55 456 187 1930 126 7 48 chr1 7717366 7717503 -274476161 + AluSx SINE Alu 1 121 -191 2214 100 3 10 chr1 7717503 7717802 -274475862 + AluSq SINE Alu 1 297 -16 1930 126 7 48 chr1 7717802 7717958 -274475706 + AluSx SINE Alu 121 282 -30 352 309 103 17 chr1 7718040 7718204 -274475460 + L1 LINE L1 3595 3768 -2378 1533 110 53 8 chr1 7718324 7718588 -274475076 - L1MA2 LINE L1 0 6304 6029 251 302 26 73 chr1 7718591 7718783 -274474881 + L1 LINE L1 3908 4090 -2056 1579 181 43 0 chr1 7718940 7719221 -274474443 - AluSx SINE Alu -15 297 5 846 95 0 0 chr1 7719264 7719390 -274474274 + (TAGA)n Simple_repeat Simple_repeat 3 128 0 2892 9 0 0 chr1 7719407 7719723 -274473941 + AluYb8 SINE Alu 1 316 -2 2306 82 0 35 chr1 7720798 7721113 -274472551 + AluY SINE Alu 1 304 -7 21 0 0 0 chr1 7721159 7721180 -274472484 + AT_rich Low_complexity Low_complexity 1 21 0 352 222 11 33 chr1 7721209 7721299 -274472365 - L1MC4 LINE L1 -29 8013 7926 1062 150 0 0 chr1 7721351 7721524 -274472140 + MER46B DNA MER2_type 2 49 -187 1354 221 66 48 chr1 7721575 7721610 -274472054 - L1MC4 LINE L1 -98 7944 7911 824 180 97 61 chr1 7721610 7721838 -274471826 - MER46A DNA MER2_type 0 236 1 1354 221 66 48 chr1 7721838 7722317 -274471347 - L1MC4 LINE L1 -131 7911 7421 1720 137 19 60 chr1 7727185 7727500 -274466164 - AluJb SINE Alu -10 302 1 2255 110 0 3 chr1 7727510 7727810 -274465854 - AluSq SINE Alu -14 299 1 257 248 142 35 chr1 7728454 7728595 -274465069 + L2 LINE L2 3158 3313 0 415 250 132 48 chr1 7728604 7728832 -274464832 + MIR SINE MIR 14 260 -2 32 0 0 0 chr1 7728891 7728923 -274464741 + AT_rich Low_complexity Low_complexity 1 32 0 699 194 0 0 chr1 7728931 7729039 -274464625 - FLAM_C SINE Alu -34 109 2 198 0 0 0 chr1 7729623 7729645 -274464019 + (T)n Simple_repeat Simple_repeat 1 22 0 246 326 44 37 chr1 7730081 7730216 -274463448 + MIR3 SINE MIR 72 207 -1 220 200 0 0 chr1 7730300 7730345 -274463319 + T-rich Low_complexity Low_complexity 4 48 0 221 357 12 12 chr1 7730562 7730646 -274463018 - L2 LINE L2 -73 3199 3116 234 333 78 7 chr1 7730789 7730930 -274462734 - MIR SINE MIR -38 224 74 1092 145 12 6 chr1 7730959 7731131 -274462533 - AluJo SINE Alu -22 290 118 808 174 0 28 chr1 7731160 7731304 -274462360 - FLAM_C SINE Alu -2 141 2 207 100 0 0 chr1 7731445 7731475 -274462189 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 251 234 0 0 chr1 7731476 7731523 -274462141 - MER66A LTR ERV1 -142 336 290 237 179 45 60 chr1 7733201 7733268 -274460396 - L1MD3 LINE L1 -11 7984 7919 * 256 271 0 0 chr1 7733257 7733316 -274460348 - L1MD2 LINE L1 -103 6256 6198 958 234 102 0 chr1 7733319 7733575 -274460089 - L1MD2 LINE L1 -216 6143 5862 765 262 24 36 chr1 7733732 7733984 -274459680 + MIR SINE MIR 14 262 0 208 225 300 0 chr1 7734027 7734107 -274459557 + MIR SINE MIR 159 262 0 1734 149 19 38 chr1 7734150 7734465 -274459199 - AluSx SINE Alu -3 309 1 207 0 0 0 chr1 7734736 7734759 -274458905 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1690 118 110 0 chr1 7734761 7735024 -274458640 - AluSx SINE Alu -20 292 1 1517 151 61 29 chr1 7735026 7735304 -274458360 - AluJo SINE Alu -18 294 8 228 175 222 0 chr1 7735417 7735480 -274458184 + MIR SINE MIR 186 262 0 2092 128 6 6 chr1 7735639 7735952 -274457712 - AluSq SINE Alu 0 313 1 3900 194 69 35 chr1 7735993 7736594 -274457070 + Charlie1 DNA MER1_type 1682 2329 -432 1836 124 0 4 chr1 7736594 7736875 -274456789 - AluSq SINE Alu 0 308 29 3900 194 69 35 chr1 7736875 7737208 -274456456 + Charlie1 DNA MER1_type 2329 2649 -112 21 0 0 0 chr1 7737220 7737241 -274456423 + AT_rich Low_complexity Low_complexity 1 21 0 297 120 0 0 chr1 7737950 7738000 -274455664 + Charlie1 DNA MER1_type 2706 2755 -6 2986 6 0 0 chr1 7738067 7738385 -274455279 + AluYb8 SINE Alu 1 318 0 201 74 0 0 chr1 7738606 7738633 -274455031 + (A)n Simple_repeat Simple_repeat 1 27 0 765 189 8 0 chr1 7739350 7739477 -274454187 + FLAM_C SINE Alu 5 132 -1 309 178 22 22 chr1 7740278 7740368 -274453296 + CT-rich Low_complexity Low_complexity 1 90 0 1643 159 52 3 chr1 7740585 7740874 -274452790 - AluJo SINE Alu -9 303 1 347 197 45 0 chr1 7740875 7740941 -274452723 + L2 LINE L2 3232 3300 -13 447 68 0 0 chr1 7740941 7741000 -274452664 + (TGGA)n Simple_repeat Simple_repeat 1 59 0 1512 130 25 105 chr1 7741153 7741477 -274452187 + AluYb8 SINE Alu 1 298 -20 2064 148 52 27 chr1 7741927 7742331 -274451333 - L1MB3 LINE L1 -28 6155 5742 2228 117 3 3 chr1 7742361 7742669 -274450995 + AluSx SINE Alu 1 308 -4 2180 96 7 7 chr1 7742691 7742984 -274450680 + AluSx SINE Alu 1 293 -19 808 166 11 40 chr1 7743098 7743273 -274450391 - AluJb SINE Alu -6 306 137 433 242 45 32 chr1 7743450 7743607 -274450057 + MER104 DNA Tc2 6 164 -16 1782 156 25 0 chr1 7744581 7744856 -274448808 + AluJb SINE Alu 13 294 -18 1566 260 95 46 chr1 7744862 7745531 -274448133 - L1MC5 LINE L1 -36 7925 7215 2316 84 0 3 chr1 7745531 7745828 -274447836 - AluSg SINE Alu -14 296 1 1566 260 95 46 chr1 7745828 7745893 -274447771 - L1MC5 LINE L1 -746 7215 7155 779 281 38 61 chr1 7745958 7746643 -274447021 - L1MC5 LINE L1 -850 6958 6281 1888 232 56 52 chr1 7746716 7747262 -274446402 - L1MC5 LINE L1 -1862 5946 5394 6285 77 17 45 chr1 7747262 7748881 -274444783 - SVA Other Other -589 1386 213 1888 232 56 52 chr1 7748881 7748962 -274444702 - L1MC5 LINE L1 -2414 5394 5315 181 218 109 0 chr1 7749016 7749071 -274444593 - L2 LINE L2 -12 3260 3200 2150 101 0 3 chr1 7749110 7749438 -274444226 - AluSx SINE Alu 0 327 1 340 272 103 22 chr1 7749620 7749804 -274443860 + Charlie8 DNA MER1_type 15 213 -2204 367 218 26 0 chr1 7749861 7749939 -274443725 + MER33 DNA MER1_type 1 80 -244 339 224 0 0 chr1 7749941 7750017 -274443647 + MER33 DNA MER1_type 249 324 0 442 296 118 39 chr1 7750293 7750496 -274443168 - L1ME2 LINE L1 0 6164 5946 333 0 0 0 chr1 7750506 7750543 -274443121 + (TG)n Simple_repeat Simple_repeat 2 38 0 2458 103 0 0 chr1 7750552 7750862 -274442802 - AluSx SINE Alu -2 310 1 183 100 0 0 chr1 7750884 7750914 -274442750 + (TTTAA)n Simple_repeat Simple_repeat 3 32 0 2093 109 0 7 chr1 7750914 7751197 -274442467 - AluSg1 SINE Alu -28 281 1 1262 98 5 16 chr1 7752219 7752403 -274441261 + L1PA8 LINE L1 5991 6172 0 1202 148 0 68 chr1 7752757 7752994 -274440670 - AluJo SINE Alu 0 312 92 1419 188 90 4 chr1 7753106 7753383 -274440281 - AluJo SINE Alu -11 301 1 2211 118 10 0 chr1 7753666 7753963 -274439701 + AluSx SINE Alu 3 302 -10 351 244 44 67 chr1 7754483 7754539 -274439125 - MIR SINE MIR -48 214 158 2193 82 65 0 chr1 7754539 7754831 -274438833 - AluY SINE Alu 0 311 1 351 244 44 67 chr1 7754831 7754909 -274438755 - MIR SINE MIR -104 158 83 202 283 75 0 chr1 7755584 7755637 -274438027 - L3 LINE CR1 -21 1556 1500 238 189 257 27 chr1 7755991 7756065 -274437599 - MIR3 SINE MIR -25 183 93 1597 168 0 82 chr1 7756172 7756357 -274437307 - AluJb SINE Alu -11 301 153 1545 173 20 47 chr1 7756357 7756658 -274437006 - AluJb SINE Alu -19 293 1 1597 168 0 82 chr1 7756658 7756800 -274436864 - AluJb SINE Alu -159 153 1 1092 146 5 66 chr1 7757633 7757814 -274435850 - AluJb SINE Alu 0 312 140 2310 89 23 0 chr1 7757814 7758117 -274435547 - AluSp SINE Alu -3 310 1 1092 146 5 66 chr1 7758117 7758166 -274435498 - AluJb SINE Alu -172 140 90 3690 235 111 64 chr1 7758295 7758902 -274434762 - L1ME1 LINE L1 -6 6160 5583 2063 90 62 7 chr1 7758902 7759192 -274434472 - AluSc SINE Alu 0 309 4 3690 235 111 64 chr1 7759192 7759206 -274434458 - L1ME1 LINE L1 -583 5583 5571 2408 70 0 13 chr1 7759206 7759507 -274434157 - AluY SINE Alu -14 297 1 3690 235 111 64 chr1 7759507 7759894 -274433770 - L1ME1 LINE L1 -595 5571 5203 1595 154 41 69 chr1 7759894 7760213 -274433451 - AluJo SINE Alu -2 310 1 3690 235 111 64 chr1 7760213 7760733 -274432931 - L1ME1 LINE L1 -963 5203 4708 2353 110 0 0 chr1 7760733 7761042 -274432622 + AluSq SINE Alu 4 312 -1 3690 235 111 64 chr1 7761042 7761174 -274432490 - L1ME1 LINE L1 -1458 4708 4584 712 169 7 70 chr1 7761174 7761316 -274432348 - FLAM_A SINE Alu 0 133 1 3690 235 111 64 chr1 7761316 7761681 -274431983 - L1ME1 LINE L1 -1582 4584 4237 1701 174 37 0 chr1 7761681 7761975 -274431689 - AluJb SINE Alu -7 305 1 3690 235 111 64 chr1 7761975 7762490 -274431174 - L1ME1 LINE L1 -1929 4237 3492 207 100 0 0 chr1 7762490 7762520 -274431144 + (T)n Simple_repeat Simple_repeat 1 30 0 1957 244 136 30 chr1 7762555 7763178 -274430486 - L1ME1 LINE L1 -2885 3261 2705 2413 80 0 3 chr1 7763178 7763479 -274430185 + AluSc SINE Alu 1 300 -9 1957 244 136 30 chr1 7763479 7763866 -274429798 - L1ME1 LINE L1 -3441 2705 2144 2157 114 3 0 chr1 7763906 7764196 -274429468 - AluSp SINE Alu -22 291 1 2127 112 10 0 chr1 7764553 7764847 -274428817 + AluSx SINE Alu 1 297 -15 24 32 0 0 chr1 7764848 7764879 -274428785 + AT_rich Low_complexity Low_complexity 1 31 0 240 313 15 0 chr1 7765602 7765669 -274427995 + L2 LINE L2 3205 3272 0 24 67 0 0 chr1 7766373 7766418 -274427246 + AT_rich Low_complexity Low_complexity 1 45 0 2362 88 7 10 chr1 7766568 7766876 -274426788 - AluY SINE Alu -4 307 1 859 162 0 13 chr1 7767094 7767248 -274426416 - L1MB8 LINE L1 -190 5988 5837 267 300 150 46 chr1 7767264 7767591 -274426073 - L3 LINE CR1 -422 1155 795 377 278 31 0 chr1 7767648 7767745 -274425919 - MIR SINE MIR -18 244 145 2253 96 3 0 chr1 7767862 7768155 -274425509 + AluSc SINE Alu 1 294 -15 2319 111 0 0 chr1 7768540 7768837 -274424827 + AluSx SINE Alu 1 297 -15 2315 111 0 0 chr1 7768840 7769147 -274424517 + AluSg SINE Alu 3 309 -1 1287 234 122 20 chr1 7769443 7769901 -274423763 - MLT1D LTR MaLR 0 505 1 54 40 0 0 chr1 7769912 7769987 -274423677 + AT_rich Low_complexity Low_complexity 1 75 0 24 0 0 0 chr1 7770024 7770048 -274423616 + AT_rich Low_complexity Low_complexity 1 24 0 800 168 0 0 chr1 7770048 7770173 -274423491 - FLAM_C SINE Alu -18 125 1 271 288 158 17 chr1 7772971 7773148 -274420516 + MIR SINE MIR 52 253 -9 2327 108 0 16 chr1 7773564 7773880 -274419784 - AluSx SINE Alu -1 311 1 2333 100 0 0 chr1 7773885 7774184 -274419480 - AluSx SINE Alu -13 299 1 217 235 123 12 chr1 7775863 7775944 -274417720 + L2 LINE L2 3182 3271 -1 2095 118 0 0 chr1 7777164 7777452 -274416212 + AluSq SINE Alu 1 288 -25 1597 186 10 3 chr1 7777462 7777758 -274415906 + AluJo SINE Alu 1 298 -14 949 174 60 5 chr1 7777763 7777964 -274415700 + AluJb SINE Alu 89 300 -12 297 164 75 15 chr1 7777975 7778042 -274415622 + L2 LINE L2 3201 3271 -1 2293 76 7 7 chr1 7778159 7778462 -274415202 + AluSc SINE Alu 1 303 -6 2067 86 38 3 chr1 7778723 7779013 -274414651 + AluSx SINE Alu 1 300 -12 1921 122 0 31 chr1 7779620 7779939 -274413725 - AluSg SINE Alu -1 309 1 744 278 5 5 chr1 7780145 7780336 -274413328 - MIR SINE MIR -59 203 13 1599 171 16 44 chr1 7780349 7780670 -274412994 - AluJb SINE Alu 0 312 1 32 43 0 0 chr1 7781064 7781110 -274412554 + AT_rich Low_complexity Low_complexity 1 46 0 2393 81 0 0 chr1 7781332 7781640 -274412024 + AluY SINE Alu 1 308 -3 203 231 154 51 chr1 7781725 7781842 -274411822 - L2 LINE L2 -5 3308 3180 296 235 59 0 chr1 7782093 7782161 -274411503 + L2 LINE L2 3190 3261 -52 500 232 120 21 chr1 7782758 7782900 -274410764 + MIR SINE MIR 44 199 -63 578 218 0 63 chr1 7783728 7783870 -274409794 - FLAM_A SINE Alu 0 133 1 399 288 297 10 chr1 7784330 7784989 -274408675 - L2 LINE L2 -1 3312 2459 676 160 25 8 chr1 7786366 7786515 -274407149 - FLAM_A SINE Alu 0 151 1 1185 162 0 40 chr1 7787208 7787436 -274406228 + AluJo SINE Alu 87 305 -7 237 108 0 0 chr1 7787479 7787516 -274406148 + (TCC)n Simple_repeat Simple_repeat 3 39 0 180 111 0 0 chr1 7790671 7790698 -274402966 + (TG)n Simple_repeat Simple_repeat 1 27 0 1892 144 7 0 chr1 7791375 7791674 -274401990 + AluSx SINE Alu 1 301 -11 1023 256 133 36 chr1 7792188 7792633 -274401031 - L2 LINE L2 0 3313 2826 226 358 51 7 chr1 7793455 7793592 -274400072 + L2 LINE L2 3170 3312 -1 514 101 0 0 chr1 7793965 7794044 -274399620 + AluJ/FRAM SINE Alu 232 310 -2 239 232 72 120 chr1 7794306 7794431 -274399233 + MIR3 SINE MIR 9 127 -81 2067 111 0 3 chr1 7794439 7794750 -274398914 - AluSg SINE Alu 0 310 2 2080 119 0 10 chr1 7795458 7795752 -274397912 - AluSx SINE Alu -21 291 1 195 341 24 0 chr1 7797077 7797162 -274396502 - L2 LINE L2 -205 3067 2981 383 226 57 28 chr1 7797448 7797554 -274396110 + MER5B DNA MER1_type 12 120 -58 200 260 244 65 chr1 7797646 7797769 -274395895 - MER5B DNA MER1_type -21 157 13 2188 106 0 3 chr1 7797826 7798128 -274395536 - AluSx SINE Alu -11 301 1 384 274 160 23 chr1 7799119 7799294 -274394370 - L2 LINE L2 -2 3311 3113 980 97 0 0 chr1 7800401 7800583 -274393081 - AluSg SINE Alu 0 329 148 212 216 0 0 chr1 7800602 7800639 -274393025 + L2 LINE L2 3230 3266 -6 1181 81 0 0 chr1 7800651 7800800 -274392864 - AluSg SINE Alu -161 149 1 186 270 0 0 chr1 7801082 7801119 -274392545 - L2 LINE L2 -6 3266 3230 6663 121 6 119 chr1 7801626 7802298 -274391366 + L1P LINE L1 826 1258 -4888 2187 63 20 20 chr1 7802298 7802601 -274391063 + AluY SINE Alu 1 303 -8 6663 121 6 119 chr1 7802601 7803329 -274390335 + L1P LINE L1 1258 2067 -4079 2026 58 4 8 chr1 7803326 7803584 -274390080 + L1PA7 LINE L1 5878 6134 -20 * 519 172 172 22 chr1 7804161 7804341 -274389323 - Charlie2 DNA MER1_type -31 2831 2625 2081 177 33 3 chr1 7804358 7804719 -274388945 - MSTA LTR MaLR -54 374 3 9117 168 33 12 chr1 7804721 7805797 -274387867 - MSTA-int LTR MaLR 0 1651 528 2037 107 33 3 chr1 7805797 7806096 -274387568 - AluSg SINE Alu -2 308 1 9117 168 33 12 chr1 7806096 7806636 -274387028 - MSTA-int LTR MaLR -1123 528 1 1326 159 14 0 chr1 7806639 7806846 -274386818 - MSTA LTR MaLR -3 425 216 619 237 93 34 chr1 7806846 7806871 -274386793 - Charlie2 DNA MER1_type -232 2630 2608 1894 133 10 17 chr1 7806871 7807173 -274386491 - AluSx SINE Alu -11 301 2 619 237 93 34 chr1 7807173 7807468 -274386196 - Charlie2 DNA MER1_type -254 2608 2291 890 261 53 0 chr1 7807515 7807779 -274385885 - Charlie2 DNA MER1_type -728 2134 1857 329 268 105 67 chr1 7807782 7807991 -274385673 - Charlie2 DNA MER1_type -2457 325 109 245 204 56 0 chr1 7808299 7808353 -274385311 + Charlie4a DNA MER1_type 276 332 -176 1998 107 7 39 chr1 7808362 7808672 -274384992 - AluSx SINE Alu -12 300 1 2096 92 14 3 chr1 7808672 7808964 -274384700 - AluSc SINE Alu -14 295 1 385 136 61 0 chr1 7808971 7809037 -274384627 + Charlie4a DNA MER1_type 434 503 -5 2203 96 0 3 chr1 7809185 7809487 -274384177 - AluSq SINE Alu -12 301 1 490 137 0 0 chr1 7810770 7810843 -274382821 + L1MC1 LINE L1 6254 6326 -7 1407 182 22 35 chr1 7810988 7811301 -274382363 + AluJo SINE Alu 1 309 -3 1416 169 63 3 chr1 7812346 7812648 -274381016 + MER33 DNA MER1_type 1 320 -4 2103 104 0 0 chr1 7812933 7813239 -274380425 - AluSg SINE Alu 0 306 1 497 273 100 45 chr1 7813895 7814115 -274379549 - L2 LINE L2 0 3313 3082 1022 269 110 63 chr1 7814201 7814802 -274378862 - MLT1G LTR MaLR 0 590 1 243 218 13 39 chr1 7814869 7814947 -274378717 + MIR3 SINE MIR 127 202 -6 2794 10 0 0 chr1 7815418 7815730 -274377934 + AluYb8 SINE Alu 1 312 -6 255 61 0 0 chr1 7816265 7816298 -274377366 + (TATATG)n Simple_repeat Simple_repeat 5 37 0 585 124 39 8 chr1 7817513 7817642 -274376022 + Tigger3(Golem) DNA MER2_type 2499 2631 -398 3639 133 15 0 chr1 7817642 7818161 -274375503 - MER1A DNA MER1_type 0 527 1 255 338 93 13 chr1 7818373 7818524 -274375140 + MIR SINE MIR 24 186 -76 577 250 16 0 chr1 7820061 7820185 -274373479 + MIR SINE MIR 120 245 -17 200 59 29 0 chr1 7820460 7820494 -274373170 + (TTTTTA)n Simple_repeat Simple_repeat 5 39 0 207 0 0 0 chr1 7821620 7821643 -274372021 + (T)n Simple_repeat Simple_repeat 1 23 0 360 273 258 11 chr1 7821743 7822010 -274371654 - L2 LINE L2 -962 2352 2020 215 278 0 0 chr1 7822066 7822120 -274371544 + L2 LINE L2 2560 2613 -701 859 152 0 0 chr1 7822127 7822252 -274371412 + FLAM_C SINE Alu 3 127 -6 2361 57 14 0 chr1 7822812 7823108 -274370556 - AluY SINE Alu -11 300 1 633 237 184 4 chr1 7823239 7823443 -274370221 + MIR SINE MIR 23 256 -6 191 130 0 22 chr1 7825363 7825409 -274368255 + (CGGGGG)n Simple_repeat Simple_repeat 3 47 0 22 0 0 0 chr1 7825458 7825480 -274368184 + GC_rich Low_complexity Low_complexity 1 22 0 48 18 0 0 chr1 7825514 7825569 -274368095 + GC_rich Low_complexity Low_complexity 1 55 0 204 40 0 0 chr1 7828959 7828984 -274364680 + (TC)n Simple_repeat Simple_repeat 2 26 0 625 161 98 18 chr1 7828984 7829096 -274364568 - FLAM_A SINE Alu -12 121 1 511 250 43 18 chr1 7829456 7829626 -274364038 + MIR SINE MIR 52 226 -36 224 346 49 47 chr1 7831276 7831604 -274362060 - L2 LINE L2 -223 3049 2722 26 0 0 0 chr1 7831842 7831868 -274361796 + AT_rich Low_complexity Low_complexity 1 26 0 299 301 240 0 chr1 7832321 7832467 -274361197 + MER5A DNA MER1_type 9 189 0 2578 61 0 3 chr1 7832668 7832978 -274360686 - AluY SINE Alu -2 309 1 2168 89 0 40 chr1 7834714 7835017 -274358647 - AluSc SINE Alu -18 291 1 2196 125 3 0 chr1 7835204 7835508 -274358156 - AluSp SINE Alu -8 305 1 2022 144 23 3 chr1 7835638 7835943 -274357721 + AluJb SINE Alu 1 311 -1 22 0 0 0 chr1 7835943 7835965 -274357699 + AT_rich Low_complexity Low_complexity 1 22 0 870 276 44 8 chr1 7837557 7837807 -274355857 - MLT1H1 LTR MaLR -39 516 258 470 155 136 19 chr1 7837867 7837970 -274355694 + FLAM_A SINE Alu 22 136 -6 268 320 33 26 chr1 7838729 7838882 -274354782 - L3 LINE CR1 -163 1414 1261 234 0 0 0 chr1 7839286 7839312 -274354352 + (A)n Simple_repeat Simple_repeat 1 26 0 195 343 38 9 chr1 7841556 7841661 -274352003 - MIR SINE MIR -51 211 104 871 205 20 37 chr1 7842638 7842853 -274350811 - L1MD3 LINE L1 0 8040 7844 1336 142 127 40 chr1 7842928 7843181 -274350483 + AluJb SINE Alu 17 291 -21 369 261 126 85 chr1 7843312 7843350 -274350314 - L1ME4a LINE L1 -57 6064 6029 2302 95 7 0 chr1 7843350 7843644 -274350020 + AluSc SINE Alu 1 296 -13 369 261 126 85 chr1 7843644 7844168 -274349496 - L1ME4a LINE L1 -92 6029 5479 660 128 29 20 chr1 7844738 7844840 -274348824 + AluJo/FLAM SINE Alu 14 116 -196 2239 88 40 3 chr1 7844840 7845137 -274348527 - AluY SINE Alu -3 308 1 2323 96 0 3 chr1 7845156 7845459 -274348205 + AluSc SINE Alu 1 302 -7 404 254 108 88 chr1 7845461 7845619 -274348045 + L1ME LINE L1 3059 3212 -2934 1639 120 0 0 chr1 7845619 7845835 -274347829 + AluSq SINE Alu 1 216 -97 404 254 108 88 chr1 7845835 7846088 -274347576 + L1ME LINE L1 3212 3459 -2687 2361 91 0 0 chr1 7846088 7846386 -274347278 + AluSg SINE Alu 1 298 -12 404 254 108 88 chr1 7846386 7846730 -274346934 + L1ME LINE L1 3459 3830 -2316 1060 209 225 57 chr1 7846752 7847118 -274346546 - MLT1G LTR MaLR 0 590 131 2238 81 7 18 chr1 7847118 7847426 -274346238 + AluSc SINE Alu 1 305 0 1060 209 225 57 chr1 7847426 7847512 -274346152 - MLT1G LTR MaLR -459 131 61 1836 167 14 0 chr1 7847512 7847805 -274345859 - AluJb SINE Alu -13 299 3 213 39 0 0 chr1 7847817 7847843 -274345821 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 621 155 0 0 chr1 7847845 7847948 -274345716 - AluSg/x SINE Alu -32 278 176 477 206 72 0 chr1 7847952 7848049 -274345615 - MLT1G LTR MaLR -490 105 2 306 0 0 0 chr1 7848212 7848246 -274345418 + (TA)n Simple_repeat Simple_repeat 2 35 0 1855 138 0 46 chr1 7848248 7848552 -274345112 - AluJb SINE Alu -11 301 12 267 293 24 0 chr1 7848568 7848650 -274345014 + L1ME LINE L1 4029 4112 -2034 1711 184 7 0 chr1 7848733 7849011 -274344653 + AluJo SINE Alu 1 280 -32 297 0 0 0 chr1 7849029 7849062 -274344602 + (CA)n Simple_repeat Simple_repeat 2 34 0 483 280 157 39 chr1 7849072 7849258 -274344406 + L1ME LINE L1 4176 4339 -1827 682 227 0 0 chr1 7849258 7849386 -274344278 + FLAM_A SINE Alu 1 128 -5 483 280 157 39 chr1 7849386 7850412 -274343252 + L1ME LINE L1 4339 5541 -625 264 229 202 9 chr1 7851287 7851396 -274342268 + L2 LINE L2 3142 3271 -1 345 348 21 0 chr1 7851804 7851945 -274341719 + MIR SINE MIR 49 192 -70 591 294 72 17 chr1 7851946 7852181 -274341483 - MIR SINE MIR -9 253 6 802 148 32 19 chr1 7852466 7852621 -274341043 + L1MB5 LINE L1 6010 6166 -8 2344 100 0 3 chr1 7853790 7854090 -274339574 - AluSg SINE Alu -11 299 1 490 226 90 0 chr1 7854731 7854864 -274338800 + MIR SINE MIR 49 193 -69 252 100 0 0 chr1 7856839 7856879 -274336785 + (TAGA)n Simple_repeat Simple_repeat 1 40 0 427 345 112 24 chr1 7857128 7857236 -274336428 - L2 LINE L2 0 3313 3216 1935 143 34 3 chr1 7857236 7857530 -274336134 - AluSx SINE Alu -9 303 1 427 345 112 24 chr1 7857530 7857887 -274335777 - L2 LINE L2 -97 3216 2807 406 269 0 21 chr1 7857924 7858100 -274335564 - MIR SINE MIR -19 243 7 285 319 70 75 chr1 7858103 7858558 -274335106 - L2 LINE L2 -540 2774 2322 24 53 0 0 chr1 7858604 7858642 -274335022 + AT_rich Low_complexity Low_complexity 1 38 0 2790 20 0 0 chr1 7860665 7860966 -274332698 + AluYb8 SINE Alu 1 301 -17 272 182 2 0 chr1 7861089 7861146 -274332518 - L1ME3 LINE L1 -196 5968 5911 1094 266 109 30 chr1 7861212 7862351 -274331313 - L1ME3 LINE L1 -356 5806 4577 490 237 51 0 chr1 7862569 7862725 -274330939 - L1M LINE L1 -735 5427 5264 24 0 0 0 chr1 7863015 7863039 -274330625 + AT_rich Low_complexity Low_complexity 1 24 0 231 36 0 0 chr1 7863232 7863260 -274330404 + (A)n Simple_repeat Simple_repeat 1 28 0 270 0 0 0 chr1 7863260 7863290 -274330374 + (TA)n Simple_repeat Simple_repeat 2 31 0 2046 72 0 27 chr1 7863290 7863553 -274330111 - AluY SINE Alu -5 306 51 216 67 0 0 chr1 7863560 7863590 -274330074 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 2282 103 0 0 chr1 7865385 7865705 -274327959 - AluSg SINE Alu 0 320 1 341 230 0 0 chr1 7866510 7866584 -274327080 - MIR SINE MIR -113 149 76 671 173 168 39 chr1 7866586 7866765 -274326899 + MER105 DNA DNA 1 202 -2 215 316 43 51 chr1 7867914 7868031 -274325633 - L2 LINE L2 -16 3256 3141 2097 134 0 29 chr1 7868637 7868943 -274324721 + AluSg SINE Alu 1 297 -13 2237 141 32 3 chr1 7870514 7870890 -274322774 - MLT1B LTR MaLR 0 390 4 42 20 0 0 chr1 7872188 7872237 -274321427 + AT_rich Low_complexity Low_complexity 1 49 0 291 294 20 0 chr1 7873220 7873322 -274320342 + MIR SINE MIR 86 189 -73 25 65 0 0 chr1 7874903 7874949 -274318715 + AT_rich Low_complexity Low_complexity 1 46 0 324 0 0 0 chr1 7876740 7876776 -274316888 + (CA)n Simple_repeat Simple_repeat 2 37 0 987 260 134 67 chr1 7878800 7879195 -274314469 - L1ME1 LINE L1 -25 6141 5667 2313 48 3 7 chr1 7879195 7879484 -274314180 + AluY SINE Alu 1 288 -23 987 260 134 67 chr1 7879484 7879651 -274314013 - L1ME1 LINE L1 -499 5667 5513 270 81 0 0 chr1 7879734 7879771 -274313893 + (T)n Simple_repeat Simple_repeat 1 37 0 306 65 0 0 chr1 7879771 7879817 -274313847 - U5 snRNA snRNA -65 51 6 1331 209 16 35 chr1 7880049 7880365 -274313299 - AluJo SINE Alu 0 312 3 849 125 0 52 chr1 7880369 7880505 -274313159 - FLAM_C SINE Alu -3 130 2 2393 74 0 16 chr1 7880785 7881097 -274312567 - AluY SINE Alu -4 307 1 267 54 0 0 chr1 7882343 7882380 -274311284 + (T)n Simple_repeat Simple_repeat 1 37 0 333 264 0 112 chr1 7882940 7883065 -274310599 + L2 LINE L2 3191 3301 -12 1503 232 24 18 chr1 7886884 7887225 -274306439 + MER2 DNA MER2_type 1 343 -1 198 0 0 0 chr1 7889454 7889476 -274304188 + (GGAGAA)n Simple_repeat Simple_repeat 1 22 0 215 261 0 0 chr1 7891022 7891087 -274302577 + (CCA)n Simple_repeat Simple_repeat 1 65 0 505 295 116 62 chr1 7892042 7892507 -274301157 - L2 LINE L2 -2 3311 2822 203 61 30 0 chr1 7893253 7893286 -274300378 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 29 28 0 0 chr1 7894638 7894674 -274298990 + AT_rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chr1 7894849 7894879 -274298785 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr1 7898625 7898649 -274295015 + GC_rich Low_complexity Low_complexity 1 24 0 497 118 0 21 chr1 7899554 7899647 -274294017 + (TGGA)n Simple_repeat Simple_repeat 1 91 0 286 314 124 13 chr1 7901462 7901615 -274292049 + MIR SINE MIR 33 202 -60 2442 73 0 0 chr1 7901682 7901985 -274291679 - AluY SINE Alu -8 303 1 258 287 130 13 chr1 7902440 7902620 -274291044 + MIR SINE MIR 18 216 -46 182 335 87 64 chr1 7903730 7903903 -274289761 + L2 LINE L2 2874 3050 -263 223 347 107 0 chr1 7903970 7904091 -274289573 + L2 LINE L2 3180 3313 0 534 235 0 0 chr1 7904099 7904269 -274289395 + (TGGA)n Simple_repeat Simple_repeat 2 171 0 282 250 0 0 chr1 7904306 7904394 -274289270 + (TGGA)n Simple_repeat Simple_repeat 1 88 0 508 182 214 73 chr1 7904489 7904681 -274288983 - MER20 DNA MER1_type 0 219 1 1506 126 4 17 chr1 7906038 7906268 -274287396 - AluJo SINE Alu 0 312 86 977 281 43 7 chr1 7906332 7906694 -274286970 + L1MB7 LINE L1 5796 6176 -2 2432 45 0 0 chr1 7906753 7907041 -274286623 - AluY SINE Alu -23 288 1 1843 126 11 0 chr1 7907063 7907326 -274286338 - AluSx SINE Alu -46 266 1 348 125 0 0 chr1 7907337 7907393 -274286271 + MER96B DNA MER1_type? 190 245 -172 2381 65 0 28 chr1 7907393 7907714 -274285950 - AluSx SINE Alu 0 312 1 2142 88 3 29 chr1 7907748 7908054 -274285610 - AluY SINE Alu -11 300 3 519 137 0 17 chr1 7908477 7908505 -274285159 - MER96B DNA MER1_type? -235 182 155 2349 84 0 7 chr1 7908505 7908815 -274284849 + AluSc SINE Alu 1 308 -1 519 137 0 17 chr1 7908815 7908903 -274284761 - MER96B DNA MER1_type? -262 155 68 297 164 33 0 chr1 7909106 7909167 -274284497 + MER45 DNA AcHobo 44 106 -72 233 175 0 0 chr1 7909161 7909201 -274284463 + MER45 DNA AcHobo 1542 1581 0 * 686 253 128 0 chr1 7910121 7910411 -274283253 + MER58B DNA MER1_type 6 341 0 2368 69 0 0 chr1 7911249 7911539 -274282125 + AluY SINE Alu 1 290 -21 2858 80 0 3 chr1 7911570 7911933 -274281731 + THE1B LTR MaLR 1 362 -2 577 316 54 24 chr1 7912186 7912521 -274281143 - L1ME4a LINE L1 -255 5866 5522 2272 100 0 0 chr1 7912538 7912837 -274280827 - AluSg SINE Alu -11 299 1 1597 130 8 8 chr1 7914229 7914502 -274279162 - AluJb SINE Alu 0 319 47 1926 151 3 0 chr1 7915232 7915530 -274278134 + AluJb SINE Alu 1 299 -13 880 117 0 0 chr1 7915530 7915650 -274278014 + AluJb SINE Alu 1 120 -192 255 213 0 0 chr1 7915668 7915743 -274277921 + A-rich Low_complexity Low_complexity 1 75 0 2382 77 3 0 chr1 7916156 7916455 -274277209 + AluSx SINE Alu 1 300 -12 2441 54 0 0 chr1 7916875 7917172 -274276492 + AluY SINE Alu 1 297 -14 964 196 6 0 chr1 7917309 7917482 -274276182 - AluJ SINE Alu -13 299 126 23 54 0 0 chr1 7917482 7917519 -274276145 + AT_rich Low_complexity Low_complexity 1 37 0 546 96 0 0 chr1 7917619 7917692 -274275972 - AluJ/FLAM SINE Alu -239 73 1 802 188 0 0 chr1 7918076 7918209 -274275455 - AluJ SINE Alu -169 133 1 1022 137 12 6 chr1 7918259 7918420 -274275244 + U1 snRNA snRNA 4 165 0 1637 114 84 4 chr1 7918459 7918732 -274274932 + AluSg SINE Alu 1 295 -15 1823 129 3 30 chr1 7919079 7919381 -274274283 + AluSx SINE Alu 1 294 -18 2279 99 0 0 chr1 7919383 7919685 -274273979 + AluY SINE Alu 3 304 -7 226 319 44 33 chr1 7920406 7920497 -274273167 - MIR3 SINE MIR -3 205 114 2212 109 6 6 chr1 7920544 7920856 -274272808 + AluSx SINE Alu 1 312 0 920 213 50 46 chr1 7921734 7921974 -274271690 + MIR SINE MIR 19 259 -3 405 288 110 0 chr1 7922051 7922169 -274271495 - L3 LINE CR1 -133 1444 1314 1711 183 0 7 chr1 7923563 7923863 -274269801 + AluJb SINE Alu 1 298 -14 2341 103 3 3 chr1 7924913 7925223 -274268441 - AluSq SINE Alu -3 310 1 261 327 242 0 chr1 7925236 7925401 -274268263 + MIR SINE MIR 57 261 -1 2333 70 0 17 chr1 7925601 7925888 -274267776 + AluY SINE Alu 22 303 -8 269 222 0 0 chr1 7926065 7926110 -274267554 - L2 LINE L2 -24 3289 3245 208 75 25 25 chr1 7926118 7926158 -274267506 + (GGA)n Simple_repeat Simple_repeat 3 42 0 2081 135 3 3 chr1 7926191 7926487 -274267177 - AluSx SINE Alu -16 296 1 543 202 90 106 chr1 7926487 7926675 -274266989 - MIR SINE MIR -16 246 62 292 299 19 9 chr1 7927008 7927115 -274266549 + L1MC4 LINE L1 7707 7814 -228 1510 156 89 7 chr1 7927115 7927397 -274266267 - AluJb SINE Alu -7 305 1 43 0 0 0 chr1 7927400 7927443 -274266221 + AT_rich Low_complexity Low_complexity 1 43 0 293 256 93 0 chr1 7927473 7927559 -274266105 + L1MC4 LINE L1 7806 7899 -143 1090 167 6 0 chr1 7927617 7927791 -274265873 + AluJb SINE Alu 136 310 -2 315 256 12 12 chr1 7927801 7927873 -274265791 + CT-rich Low_complexity Low_complexity 1 75 -11 1796 166 10 7 chr1 7927873 7928174 -274265490 - AluJb SINE Alu -6 306 5 315 256 12 12 chr1 7928174 7928187 -274265477 + CT-rich Low_complexity Low_complexity 74 86 0 302 229 0 16 chr1 7928193 7928254 -274265410 + L2 LINE L2 3254 3313 0 190 321 0 25 chr1 7928319 7928400 -274265264 + L2 LINE L2 2174 2252 -1062 2302 113 0 3 chr1 7928774 7929085 -274264579 - AluSg SINE Alu 0 310 1 231 36 0 0 chr1 7929085 7929113 -274264551 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 2022 108 48 0 chr1 7929113 7929382 -274264282 - AluSx SINE Alu -30 282 1 991 101 8 0 chr1 7929385 7929514 -274264150 - AluSq/x SINE Alu -179 134 5 321 260 67 39 chr1 7930564 7930668 -274262996 - L3b LINE CR1 -190 1393 1287 2157 115 3 14 chr1 7931061 7931392 -274262272 - AluSx SINE Alu 0 312 3 21 0 0 0 chr1 7931399 7931420 -274262244 + AT_rich Low_complexity Low_complexity 1 21 0 2034 103 29 7 chr1 7931629 7931910 -274261754 - AluSx SINE Alu -14 298 12 2326 66 20 7 chr1 7932305 7932606 -274261058 - AluSq SINE Alu -8 305 1 2072 116 176 19 chr1 7932676 7932715 -274260949 - MSTA LTR MaLR 0 428 396 2197 126 10 0 chr1 7932715 7933024 -274260640 + AluSx SINE Alu 1 312 0 2072 116 176 19 chr1 7933024 7933354 -274260310 - MSTA LTR MaLR -32 396 1 225 0 0 0 chr1 7933646 7933671 -274259993 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 710 187 0 0 chr1 7933674 7933781 -274259883 - AluJb SINE Alu -31 281 175 1840 131 28 21 chr1 7933820 7934140 -274259524 + AluJb SINE Alu 1 312 0 2140 98 7 17 chr1 7934150 7934460 -274259204 - AluSx SINE Alu 0 308 2 203 316 63 0 chr1 7935208 7935287 -274258377 + L2 LINE L2 3189 3272 0 1799 81 27 0 chr1 7935344 7935566 -274258098 - AluSx SINE Alu -84 228 1 872 124 0 0 chr1 7935695 7935808 -274257856 + AluSx SINE Alu 62 174 -138 1817 97 4 4 chr1 7935809 7936046 -274257618 - AluSc SINE Alu -72 237 1 788 193 60 0 chr1 7936055 7936221 -274257443 - MLT1C LTR MaLR -291 176 1 210 336 138 52 chr1 7936222 7936454 -274257210 + L2 LINE L2 3002 3253 -19 234 0 0 0 chr1 7936458 7936484 -274257180 + (CA)n Simple_repeat Simple_repeat 2 27 0 805 188 0 0 chr1 7936484 7936612 -274257052 - FLAM_C SINE Alu -5 128 1 2125 129 7 10 chr1 7936657 7936966 -274256698 + AluSx SINE Alu 3 310 -2 2179 112 7 0 chr1 7937170 7937456 -274256208 + AluSx SINE Alu 1 288 -24 297 0 0 0 chr1 7937468 7937501 -274256163 + (TG)n Simple_repeat Simple_repeat 2 34 0 418 370 24 6 chr1 7937634 7937799 -274255865 - MIR3 SINE MIR -9 199 32 270 246 0 0 chr1 7937908 7937973 -274255691 + MIR SINE MIR 34 98 -164 2323 104 0 0 chr1 7938061 7938360 -274255304 + AluSx SINE Alu 1 299 -13 297 75 0 0 chr1 7938487 7938527 -274255137 + (TG)n Simple_repeat Simple_repeat 2 41 0 1002 126 119 0 chr1 7938807 7938958 -274254706 + AluJb SINE Alu 137 305 -7 248 109 0 22 chr1 7938961 7939007 -274254657 + (GAA)n Simple_repeat Simple_repeat 1 45 0 2075 130 27 10 chr1 7939064 7939365 -274254299 - AluSq SINE Alu -7 306 1 2480 71 3 7 chr1 7939472 7939781 -274253883 - AluY SINE Alu 0 311 4 2351 83 3 7 chr1 7939817 7940119 -274253545 + AluY SINE Alu 1 301 -10 1618 184 3 44 chr1 7940135 7940430 -274253234 + AluJo SINE Alu 10 293 -19 444 37 0 0 chr1 7940430 7940484 -274253180 + (GGAA)n Simple_repeat Simple_repeat 2 55 0 1618 184 3 44 chr1 7940484 7940504 -274253160 + AluJo SINE Alu 293 312 0 349 245 47 19 chr1 7940551 7940657 -274253007 - L2 LINE L2 0 3313 3205 609 67 0 0 chr1 7940837 7940912 -274252752 + AluS SINE Alu 2 76 -236 2418 74 0 3 chr1 7940912 7941196 -274252468 + AluSq SINE Alu 15 297 -16 266 75 0 0 chr1 7941251 7941291 -274252373 + HY1 scRNA scRNA 72 111 -1 699 196 0 8 chr1 7941599 7941732 -274251932 + FLAM_C SINE Alu 2 133 -10 223 169 0 34 chr1 7941732 7941791 -274251873 + GA-rich Low_complexity Low_complexity 4 60 0 1994 127 7 13 chr1 7942977 7943284 -274250380 - AluJb SINE Alu -7 305 1 2552 58 0 0 chr1 7943441 7943736 -274249928 + AluY SINE Alu 1 295 -16 188 289 26 26 chr1 7943780 7943856 -274249808 + L2 LINE L2 2422 2497 -817 610 315 88 28 chr1 7943856 7944425 -274249239 + L2 LINE L2 2221 2823 -491 538 280 70 23 chr1 7944459 7944673 -274248991 + L2 LINE L2 3090 3313 0 2160 103 34 0 chr1 7944744 7945035 -274248629 + AluSg SINE Alu 1 301 -9 335 327 94 65 chr1 7945170 7945604 -274248060 + L2 LINE L2 2812 3258 -14 829 217 0 6 chr1 7945833 7945994 -274247670 + FRAM SINE Alu 1 160 -6 2146 91 30 27 chr1 7946047 7946460 -274247204 + AluSp SINE Alu 1 414 0 284 250 115 77 chr1 7946460 7946533 -274247131 + L1 LINE L1 4600 4669 -1477 2489 49 0 0 chr1 7946533 7946821 -274246843 + AluY SINE Alu 1 288 -23 180 0 0 0 chr1 7946821 7946841 -274246823 + (TA)n Simple_repeat Simple_repeat 2 21 0 284 250 115 77 chr1 7946841 7946922 -274246742 + L1 LINE L1 4668 4761 -1385 2427 89 0 16 chr1 7946922 7947238 -274246426 + AluSq SINE Alu 1 311 -2 411 217 3 44 chr1 7947287 7947437 -274246227 + L1ME4a LINE L1 5201 5339 -807 1829 113 19 12 chr1 7947438 7947694 -274245970 + AluSp SINE Alu 39 296 -17 2361 139 86 8 chr1 7947699 7948094 -274245570 + MSTB LTR MaLR 1 426 0 435 219 34 25 chr1 7948108 7948227 -274245437 - MIR SINE MIR -28 234 115 772 237 21 5 chr1 7948232 7948426 -274245238 + MER58A DNA MER1_type 1 197 -27 453 184 13 133 chr1 7948429 7948500 -274245164 - MER45A DNA AcHobo -1407 174 131 2028 116 56 0 chr1 7948500 7948784 -274244880 + AluSx SINE Alu 1 300 -12 453 184 13 133 chr1 7948784 7948870 -274244794 - MER45A DNA AcHobo -1450 131 36 221 330 42 4 chr1 7948943 7949041 -274244623 - MIR SINE MIR -94 114 13 282 349 8 0 chr1 7949059 7949185 -274244479 + L1ME4a LINE L1 5486 5612 -509 353 258 118 45 chr1 7949194 7949415 -274244249 + L1ME4a LINE L1 5827 6063 -58 1749 159 25 11 chr1 7949631 7949914 -274243750 + AluJb SINE Alu 10 296 -16 368 264 203 11 chr1 7949992 7950174 -274243490 + MER115 DNA AcHobo 23 239 -454 3227 125 97 22 chr1 7950356 7950933 -274242731 - LTR29 LTR ERV1 0 622 3 243 213 85 43 chr1 7950950 7951044 -274242620 + Zaphod DNA AcHobo 3915 4012 -19 2244 109 3 34 chr1 7951178 7951499 -274242165 - AluSx SINE Alu -1 311 1 1602 157 4 15 chr1 7951499 7951760 -274241904 - AluJo SINE Alu -16 296 39 2286 110 3 19 chr1 7951934 7952251 -274241413 + AluSx SINE Alu 1 312 0 1739 175 23 16 chr1 7952338 7952641 -274241023 - AluJb SINE Alu -7 305 1 2178 119 3 3 chr1 7953050 7953352 -274240312 - AluSx SINE Alu -10 302 1 2116 108 0 63 chr1 7953558 7953891 -274239773 + AluSx SINE Alu 1 312 0 2132 177 16 26 chr1 7954095 7954446 -274239218 - L1MB7 LINE L1 -9 6175 5827 2287 114 3 0 chr1 7954446 7954754 -274238910 - AluSx SINE Alu -3 309 1 2132 177 16 26 chr1 7954754 7954832 -274238832 - L1MB7 LINE L1 -357 5827 5750 2256 103 17 7 chr1 7954892 7955194 -274238470 - AluSg SINE Alu -5 305 1 2130 99 23 26 chr1 7955195 7955497 -274238167 - AluSx SINE Alu -11 301 1 2250 121 7 0 chr1 7955649 7955954 -274237710 - AluSp SINE Alu -6 307 1 548 288 142 14 chr1 7956012 7956177 -274237487 - L1ME3 LINE L1 -218 5944 5801 1070 214 28 0 chr1 7956177 7956392 -274237272 - MER58A DNA MER1_type 0 224 4 548 288 142 14 chr1 7956392 7956771 -274236893 - L1ME3 LINE L1 -361 5801 5323 2024 121 0 17 chr1 7956771 7957060 -274236604 - AluSx SINE Alu -4 308 25 1646 54 0 0 chr1 7957060 7957244 -274236420 - AluY SINE Alu -126 185 1 420 149 0 64 chr1 7957270 7957364 -274236300 + AluJ/FRAM SINE Alu 218 305 -7 24 0 0 0 chr1 7957364 7957388 -274236276 + AT_rich Low_complexity Low_complexity 1 24 0 31 26 0 0 chr1 7957401 7957439 -274236225 + AT_rich Low_complexity Low_complexity 1 38 0 216 0 0 0 chr1 7957700 7957724 -274235940 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 311 256 33 0 chr1 7957752 7957842 -274235822 - L1ME LINE L1 -297 5824 5732 2229 112 0 7 chr1 7957887 7958192 -274235472 - AluSg SINE Alu -7 303 1 1071 68 8 0 chr1 7958199 7958331 -274235333 - AluSq/x SINE Alu -180 133 1 2604 65 3 0 chr1 7959027 7959336 -274234328 + AluY SINE Alu 1 310 -1 2651 64 0 0 chr1 7959339 7959650 -274234014 + AluY SINE Alu 1 311 0 2097 139 0 10 chr1 7959662 7959971 -274233693 + AluSx SINE Alu 1 306 -6 323 197 15 0 chr1 7960027 7960093 -274233571 - AluJ/FLAM SINE Alu -228 74 8 2071 106 7 0 chr1 7960142 7960425 -274233239 + AluY SINE Alu 18 302 -9 383 158 267 10 chr1 7960653 7960754 -274232910 + FLAM_C SINE Alu 5 131 -2 572 163 0 0 chr1 7960980 7961066 -274232598 + AluS SINE Alu 7 92 -221 1683 124 116 0 chr1 7961086 7961344 -274232320 + AluSx SINE Alu 21 308 -4 969 129 0 0 chr1 7962508 7962647 -274231017 + AluJb SINE Alu 1 139 -173 2135 112 0 7 chr1 7962861 7963147 -274230517 - AluSq SINE Alu -29 284 1 1802 155 3 14 chr1 7963398 7963695 -274229969 + AluJo SINE Alu 5 298 -14 1401 201 123 4 chr1 7963698 7963967 -274229697 + AluJo SINE Alu 1 301 -1 331 111 0 0 chr1 7963967 7964012 -274229652 + (GA)n Simple_repeat Simple_repeat 1 45 0 584 171 0 8 chr1 7964015 7964132 -274229532 + GA-rich Low_complexity Low_complexity 1 116 0 387 367 137 5 chr1 7964146 7964563 -274229101 + L2 LINE L2 2173 2644 -670 2284 100 0 0 chr1 7964571 7964887 -274228777 - AluSx SINE Alu 0 317 2 445 284 42 64 chr1 7964979 7965215 -274228449 + L2 LINE L2 3078 3308 -5 1886 124 11 11 chr1 7965721 7965995 -274227669 + AluSq SINE Alu 2 275 -38 778 125 191 0 chr1 7965996 7966132 -274227532 + AluSp SINE Alu 137 298 -15 2509 76 3 0 chr1 7966273 7966576 -274227088 + AluSp SINE Alu 2 305 -8 405 58 0 0 chr1 7966576 7966628 -274227036 + (TA)n Simple_repeat Simple_repeat 2 53 0 316 143 29 0 chr1 7966669 7966739 -274226925 + (CATATA)n Simple_repeat Simple_repeat 4 75 0 293 86 0 0 chr1 7966741 7966799 -274226865 + LTR66 LTR ERVL 394 451 -159 2295 84 3 0 chr1 7967018 7967337 -274226327 + AluSp SINE Alu 1 320 0 868 121 35 7 chr1 7967358 7967499 -274226165 + L1MA5 LINE L1 6154 6298 -2 326 298 23 46 chr1 7967550 7967681 -274225983 + MIR SINE MIR 134 261 -1 254 146 0 18 chr1 7968021 7968076 -274225588 + (TCC)n Simple_repeat Simple_repeat 3 56 0 253 299 11 11 chr1 7968446 7968533 -274225131 - LTR67 LTR ERVL -3 554 468 343 228 40 101 chr1 7968607 7968719 -274224945 + L1MD2 LINE L1 6210 6312 -47 2267 111 3 0 chr1 7968719 7969025 -274224639 - AluSx SINE Alu -5 307 1 343 228 40 101 chr1 7969025 7969061 -274224603 + L1MD2 LINE L1 6312 6349 -10 2145 106 6 38 chr1 7969391 7969711 -274223953 + AluSg SINE Alu 1 310 0 2382 88 10 0 chr1 7970321 7970615 -274223049 - AluSp SINE Alu -16 297 1 2368 91 27 0 chr1 7970919 7971216 -274222448 - AluSq SINE Alu -3 310 6 816 85 24 30 chr1 7971222 7971386 -274222278 + (TTTC)n Simple_repeat Simple_repeat 1 163 0 468 0 0 0 chr1 7971384 7971436 -274222228 + (TCCC)n Simple_repeat Simple_repeat 1 52 0 * 1965 113 0 18 chr1 7971436 7971788 -274221876 - AluSx SINE Alu 0 359 13 592 317 86 46 chr1 7971862 7972316 -274221348 + L2 LINE L2 2842 3313 0 2641 108 8 3 chr1 7972376 7972738 -274220926 - THE1B LTR MaLR 0 364 1 425 163 47 46 chr1 7973686 7973801 -274219863 + MER34 LTR ERV1 431 536 -6 231 40 0 140 chr1 7973809 7973859 -274219805 + MLT1D LTR MaLR 245 287 -218 2284 94 0 10 chr1 7973886 7974174 -274219490 - AluSq SINE Alu -28 285 1 871 57 0 5 chr1 7974271 7974401 -274219263 + MER30 DNA MER1_type 1 126 -104 271 0 0 0 chr1 7974404 7974434 -274219230 + (TTTG)n Simple_repeat Simple_repeat 3 52 0 2272 76 4 0 chr1 7974434 7974711 -274218953 - AluSx SINE Alu -31 281 5 444 198 47 38 chr1 7974734 7974840 -274218824 + L2 LINE L2 3166 3272 0 1994 123 45 3 chr1 7975471 7975763 -274217901 - AluSg SINE Alu -6 304 1 985 246 38 102 chr1 7975948 7976050 -274217614 - MER34 LTR ERV1 0 542 435 2205 135 0 3 chr1 7976050 7976354 -274217310 - AluSx SINE Alu -9 303 1 985 246 38 102 chr1 7976354 7976803 -274216861 - MER34 LTR ERV1 -107 435 27 2250 98 3 35 chr1 7976803 7977120 -274216544 - AluSx SINE Alu -5 307 1 985 246 38 102 chr1 7977120 7977144 -274216520 - MER34 LTR ERV1 -515 27 3 1762 100 10 46 chr1 7977171 7977578 -274216086 - MER1B DNA MER1_type 0 339 1 2293 108 3 25 chr1 7977920 7978235 -274215429 + AluSp SINE Alu 1 308 -5 2170 117 3 0 chr1 7978254 7978544 -274215120 + AluSx SINE Alu 5 295 -17 1575 155 68 0 chr1 7978916 7979215 -274214449 + AluJo SINE Alu 1 317 0 2307 128 0 0 chr1 7979536 7979841 -274213823 - AluJo SINE Alu -7 305 1 1957 127 37 10 chr1 7980185 7980520 -274213144 - AluSx SINE Alu 0 343 1 26 0 0 0 chr1 7980841 7980867 -274212797 + AT_rich Low_complexity Low_complexity 1 26 0 307 299 26 0 chr1 7980875 7980952 -274212712 - L1MC4 LINE L1 -1350 6692 6614 857 137 0 0 chr1 7980980 7981097 -274212567 - FLAM_C SINE Alu -26 117 1 210 91 0 0 chr1 7981125 7981158 -274212506 + (TG)n Simple_repeat Simple_repeat 2 34 0 1010 179 6 0 chr1 7981203 7981365 -274212299 + AluJb SINE Alu 136 298 -14 428 231 27 34 chr1 7982070 7982217 -274211447 + AluYa5 SINE Alu 164 309 -2 555 174 93 41 chr1 7982218 7982390 -274211274 - MER96B DNA MER1_type? -236 181 1 869 189 13 0 chr1 7982419 7982572 -274211092 - AluJb SINE Alu -21 291 137 24 96 0 0 chr1 7983000 7983073 -274210591 + GC_rich Low_complexity Low_complexity 1 73 0 826 124 0 0 chr1 7983586 7983699 -274209965 + AluJb SINE Alu 196 308 -4 2137 105 54 0 chr1 7983707 7984001 -274209663 + AluSg SINE Alu 1 310 0 737 254 21 25 chr1 7984137 7984373 -274209291 - L1MC4 LINE L1 0 8042 7808 204 68 0 102 chr1 7984466 7984525 -274209139 + (TCTCTG)n Simple_repeat Simple_repeat 3 55 0 34 0 0 0 chr1 7985184 7985218 -274208446 + AT_rich Low_complexity Low_complexity 1 34 0 449 95 60 0 chr1 7985218 7985302 -274208362 - L1PB1 LINE L1 0 6151 6063 256 260 8 98 chr1 7985446 7985580 -274208084 - MER5A DNA MER1_type 0 189 54 307 222 40 95 chr1 7985773 7985899 -274207765 - L1ME LINE L1 -466 5655 5537 2316 92 0 0 chr1 7985992 7986304 -274207360 + AluSx SINE Alu 1 312 0 509 325 124 0 chr1 7986387 7986581 -274207083 + MIR SINE MIR 26 243 -19 405 300 19 25 chr1 7986937 7987097 -274206567 + MIR SINE MIR 34 192 -70 207 344 78 19 chr1 7987196 7987350 -274206314 + L2 LINE L2 2578 2740 -574 1101 73 0 7 chr1 7988732 7988869 -274204795 - AluSp/q SINE Alu -15 298 163 331 316 18 18 chr1 7989205 7989319 -274204345 + MIR SINE MIR 109 222 -40 2096 113 10 3 chr1 7989331 7989622 -274204042 - AluSg SINE Alu -17 293 1 1844 171 3 22 chr1 7990028 7990343 -274203321 + AluJb SINE Alu 1 309 -3 211 205 0 0 chr1 7990493 7990532 -274203132 + CT-rich Low_complexity Low_complexity 3 41 0 729 176 0 29 chr1 7990532 7990668 -274202996 - AluJb SINE Alu -179 133 2 532 238 6 70 chr1 7990750 7990851 -274202813 + MER45 DNA AcHobo 4 91 -862 2241 96 7 0 chr1 7990851 7991142 -274202522 - AluSx SINE Alu -19 293 1 532 238 6 70 chr1 7991142 7991212 -274202452 + MER45 DNA AcHobo 91 164 -789 450 248 255 0 chr1 7991333 7991486 -274202178 + MER45C DNA AcHobo 762 953 0 202 354 31 42 chr1 7991702 7991798 -274201866 + MIR3 SINE MIR 106 200 -8 1918 160 10 0 chr1 7991921 7992215 -274201449 + AluJo SINE Alu 1 297 -15 2518 93 0 0 chr1 7992495 7992808 -274200856 + AluSq SINE Alu 1 313 0 2142 130 0 3 chr1 7992944 7993236 -274200428 - AluSx SINE Alu -21 291 1 742 188 0 0 chr1 7993620 7993753 -274199911 - FLAM_C SINE Alu 0 133 1 935 137 12 6 chr1 7993803 7993964 -274199700 + U1 snRNA snRNA 4 165 0 1728 114 84 4 chr1 7994003 7994276 -274199388 + AluSg SINE Alu 1 295 -15 1913 129 3 30 chr1 7994623 7994925 -274198739 + AluSx SINE Alu 1 294 -18 2388 99 0 0 chr1 7994927 7995229 -274198435 + AluY SINE Alu 3 304 -7 225 319 44 33 chr1 7995950 7996041 -274197623 - MIR3 SINE MIR -3 205 114 2320 109 6 6 chr1 7996088 7996400 -274197264 + AluSx SINE Alu 1 312 0 884 208 50 46 chr1 7997278 7997518 -274196146 + MIR SINE MIR 19 259 -3 378 288 110 0 chr1 7997595 7997713 -274195951 - L3 LINE CR1 -133 1444 1314 1775 183 0 7 chr1 7999107 7999407 -274194257 + AluJb SINE Alu 1 298 -14 2353 103 3 3 chr1 8000457 8000767 -274192897 - AluSq SINE Alu -3 310 1 233 279 165 0 chr1 8000780 8000859 -274192805 + MIR SINE MIR 57 148 -114 2340 70 0 17 chr1 8001146 8001433 -274192231 + AluY SINE Alu 22 303 -8 255 245 0 0 chr1 8001606 8001655 -274192009 - L2 LINE L2 -20 3293 3245 208 75 25 25 chr1 8001663 8001703 -274191961 + (GGA)n Simple_repeat Simple_repeat 3 42 0 2089 135 3 3 chr1 8001736 8002032 -274191632 - AluSx SINE Alu -16 296 1 511 223 85 101 chr1 8002032 8002220 -274191444 - MIR SINE MIR -16 246 62 300 306 25 13 chr1 8002515 8002660 -274191004 + L1MC4 LINE L1 7573 7814 -95 1517 156 89 7 chr1 8002660 8002942 -274190722 - AluJb SINE Alu -7 305 1 43 0 0 0 chr1 8002945 8002988 -274190676 + AT_rich Low_complexity Low_complexity 1 43 0 302 256 93 0 chr1 8003018 8003104 -274190560 + L1MC4 LINE L1 7806 7899 -143 1096 167 6 0 chr1 8003162 8003336 -274190328 + AluJb SINE Alu 136 310 -2 315 256 12 12 chr1 8003346 8003418 -274190246 + CT-rich Low_complexity Low_complexity 1 75 -11 1806 166 10 7 chr1 8003418 8003719 -274189945 - AluJb SINE Alu -6 306 5 315 256 12 12 chr1 8003719 8003732 -274189932 + CT-rich Low_complexity Low_complexity 74 86 0 286 229 0 16 chr1 8003738 8003799 -274189865 + L2 LINE L2 3254 3313 0 181 321 0 25 chr1 8003864 8003945 -274189719 + L2 LINE L2 2174 2252 -1062 2304 113 0 3 chr1 8004301 8004630 -274189034 - AluSg SINE Alu 0 328 1 1966 129 50 4 chr1 8004648 8004928 -274188736 - AluSq SINE Alu -20 293 1 695 183 0 0 chr1 8005626 8005741 -274187923 + AluJo SINE Alu 1 115 -187 2759 72 3 8 chr1 8005741 8006113 -274187551 - THE1C LTR MaLR -4 371 1 1057 174 10 20 chr1 8006113 8006309 -274187355 + AluJo SINE Alu 106 299 -13 856 202 39 6 chr1 8006413 8006591 -274187073 - MIR SINE MIR -60 202 19 1242 185 14 14 chr1 8006921 8007143 -274186521 + AluJb SINE Alu 81 302 -10 1678 172 0 47 chr1 8007581 8007900 -274185764 + AluJb SINE Alu 1 304 -8 1550 121 3 121 chr1 8008059 8008239 -274185425 - AluSc SINE Alu -17 292 167 243 0 0 0 chr1 8008239 8008266 -274185398 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1550 121 3 121 chr1 8008266 8008416 -274185248 - AluSc SINE Alu -142 167 1 281 122 20 0 chr1 8008418 8008467 -274185197 - AluSg/x SINE Alu -170 130 81 279 211 26 0 chr1 8008571 8008647 -274185017 + (CAAT)n Simple_repeat Simple_repeat 1 78 0 305 263 7 0 chr1 8008655 8008792 -274184872 + (TCCA)n Simple_repeat Simple_repeat 4 141 0 1011 152 0 0 chr1 8008817 8008995 -274184669 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 374 260 0 17 chr1 8009014 8009191 -274184473 + (TCCA)n Simple_repeat Simple_repeat 3 176 0 210 318 0 0 chr1 8009192 8009255 -274184409 + (CCCA)n Simple_repeat Simple_repeat 4 66 0 378 0 0 0 chr1 8010144 8010186 -274183478 + (TG)n Simple_repeat Simple_repeat 2 43 0 273 118 0 0 chr1 8010186 8010237 -274183427 + (GA)n Simple_repeat Simple_repeat 2 52 0 1858 132 18 14 chr1 8010238 8010518 -274183146 - AluJb SINE Alu -31 281 1 2296 80 0 7 chr1 8010861 8011169 -274182495 + AluSx SINE Alu 1 306 0 2445 87 3 0 chr1 8011580 8011880 -274181784 - AluSx SINE Alu -11 301 1 22 35 0 0 chr1 8012614 8012643 -274181021 + GC_rich Low_complexity Low_complexity 1 29 0 247 51 0 0 chr1 8013000 8013039 -274180625 + ORSL DNA AcHobo 171 209 -66 261 291 164 0 chr1 8013154 8013264 -274180400 - L2 LINE L2 -34 3279 3152 693 85 94 0 chr1 8013295 8013401 -274180263 - FLAM_C SINE Alu -16 117 2 322 315 44 64 chr1 8013407 8013595 -274180069 - L2 LINE L2 -114 3199 3020 2161 110 14 3 chr1 8013595 8013887 -274179777 + AluSx SINE Alu 1 295 -17 322 315 44 64 chr1 8013887 8014041 -274179623 - L2 LINE L2 -293 3020 2864 261 256 141 16 chr1 8015032 8015153 -274178511 - MLT1J2 LTR MaLR -46 404 269 1733 167 30 17 chr1 8017075 8017374 -274176290 + AluJb SINE Alu 1 303 -9 219 304 0 0 chr1 8017486 8017611 -274176053 + (CA)n Simple_repeat Simple_repeat 1 125 0 464 161 21 0 chr1 8018270 8018363 -274175301 - MER53 DNA DNA -2 187 93 246 278 53 53 chr1 8018777 8018986 -274174678 - L1ME3A LINE L1 0 6170 5962 378 233 273 7 chr1 8019020 8019170 -274174494 - LTR16C LTR ERVL 0 491 302 1705 161 7 20 chr1 8019173 8019478 -274174186 - MLT1A1 LTR MaLR -64 301 1 261 286 122 0 chr1 8019478 8019576 -274174088 - LTR16C LTR ERVL -222 269 160 967 170 29 164 chr1 8019597 8019817 -274173847 - MLT1B LTR MaLR 0 390 201 280 143 0 0 chr1 8019838 8019887 -274173777 - Alu SINE Alu 0 300 252 1697 245 70 38 chr1 8020043 8020468 -274173196 - L1ME3A LINE L1 -239 5931 5476 2089 123 19 23 chr1 8020468 8020778 -274172886 - AluSq SINE Alu -4 309 1 1697 245 70 38 chr1 8020778 8021009 -274172655 - L1ME3A LINE L1 -694 5476 5254 180 0 0 0 chr1 8021023 8021043 -274172621 + (T)n Simple_repeat Simple_repeat 1 20 0 332 279 88 0 chr1 8021080 8021227 -274172437 + L1M4 LINE L1 5006 5165 -981 1996 153 0 7 chr1 8021234 8021528 -274172136 + AluJb SINE Alu 1 292 -20 265 263 61 18 chr1 8021547 8021661 -274172003 - L1ME3A LINE L1 -1568 4578 4460 1442 85 0 20 chr1 8021675 8021874 -274171790 + AluSg/x SINE Alu 117 311 -1 726 263 29 55 chr1 8021876 8022235 -274171429 - L1ME3A LINE L1 -2338 3808 3439 405 58 0 0 chr1 8022235 8022287 -274171377 + (TTCC)n Simple_repeat Simple_repeat 3 54 0 971 163 218 28 chr1 8022287 8022539 -274171125 - AluSg SINE Alu 0 300 1 1619 112 166 87 chr1 8022671 8022889 -274170775 + MLT1B LTR MaLR 1 200 -190 1860 151 131 13 chr1 8022889 8023272 -274170392 + MSTA LTR MaLR 1 428 0 1619 112 166 87 chr1 8023272 8023330 -274170334 + MLT1B LTR MaLR 200 252 -138 639 151 109 0 chr1 8023330 8023449 -274170215 + FLAM_C SINE Alu 1 132 -1 1619 112 166 87 chr1 8023449 8023527 -274170137 + MLT1B LTR MaLR 252 384 -6 444 223 28 97 chr1 8023574 8023636 -274170028 - L1ME3A LINE L1 -2885 3261 3196 2339 125 0 0 chr1 8023636 8023947 -274169717 + AluSx SINE Alu 1 311 -1 444 223 28 97 chr1 8023947 8024131 -274169533 - L1ME3A LINE L1 -2950 3196 3032 2147 144 0 3 chr1 8024131 8024444 -274169220 - AluJb SINE Alu 0 312 1 2085 121 7 0 chr1 8024467 8024777 -274168887 - AluSx SINE Alu -5 307 1 338 255 47 0 chr1 8024779 8024885 -274168779 - L1ME3A LINE L1 -3113 3033 2923 274 206 21 184 chr1 8025115 8025185 -274168479 + L2 LINE L2 2245 2325 -989 2095 114 3 0 chr1 8025185 8025503 -274168161 - AluSp SINE Alu 0 313 1 274 206 21 184 chr1 8025503 8025517 -274168147 + L2 LINE L2 2325 2340 -974 1963 130 3 3 chr1 8025517 8025816 -274167848 - AluSx SINE Alu -13 299 1 274 206 21 184 chr1 8025816 8025871 -274167793 + L2 LINE L2 2340 2362 -952 805 160 77 50 chr1 8025871 8026052 -274167612 + AluJo SINE Alu 1 186 -126 1748 148 7 10 chr1 8026158 8026463 -274167201 + AluSx SINE Alu 1 304 -8 1006 139 0 0 chr1 8026463 8026637 -274167027 + AluSg/x SINE Alu 134 307 0 342 0 0 0 chr1 8026981 8027019 -274166645 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 1993 98 0 4 chr1 8027023 8027299 -274166365 - AluSx SINE Alu -37 275 1 431 186 10 49 chr1 8027299 8027401 -274166263 - MER39 LTR ERV1 -609 98 1 352 338 1 23 chr1 8030349 8030482 -274163182 - MIR3 SINE MIR -51 157 42 2111 124 0 0 chr1 8030865 8031164 -274162500 + AluSq SINE Alu 1 299 -14 2249 95 0 0 chr1 8031505 8031800 -274161864 + AluSx SINE Alu 1 295 -17 297 0 0 0 chr1 8031800 8031833 -274161831 + (TA)n Simple_repeat Simple_repeat 1 33 0 2226 97 0 0 chr1 8032102 8032401 -274161263 - AluSq SINE Alu -9 304 6 36 23 0 0 chr1 8032574 8032617 -274161047 + AT_rich Low_complexity Low_complexity 1 43 0 1852 145 3 13 chr1 8032919 8033223 -274160441 + AluJb SINE Alu 1 301 -11 499 251 46 27 chr1 8033337 8033595 -274160069 + MLT1J2 LTR MaLR 34 329 -121 252 275 50 38 chr1 8033737 8033817 -274159847 - L3 LINE CR1 -958 619 539 4113 133 31 2 chr1 8033966 8034583 -274159081 + MER41B LTR ERV1 1 635 0 1174 113 0 0 chr1 8035062 8035230 -274158434 + AluSq SINE Alu 140 307 -6 1960 128 0 39 chr1 8036783 8037089 -274156575 - AluJo SINE Alu -18 294 1 373 317 7 7 chr1 8037284 8037426 -274156238 - L1M4 LINE L1 -3329 2817 2676 2097 108 0 10 chr1 8037913 8038218 -274155446 + AluSx SINE Alu 1 302 -10 1877 123 0 3 chr1 8038218 8038502 -274155162 + AluY SINE Alu 1 284 -27 531 218 0 0 chr1 8038618 8038719 -274154945 + U6 snRNA snRNA 1 101 -6 253 230 159 0 chr1 8038959 8039085 -274154579 + L1M4 LINE L1 2897 3042 -3104 644 302 115 75 chr1 8039093 8039188 -274154476 + L1M4 LINE L1 3214 3304 -2842 2170 107 0 0 chr1 8039188 8039488 -274154176 + AluSg SINE Alu 9 308 -2 2023 117 0 29 chr1 8039491 8039798 -274153866 + AluSx SINE Alu 1 298 -14 644 302 115 75 chr1 8039798 8040114 -274153550 + L1M4 LINE L1 3305 3659 -2487 2086 106 13 3 chr1 8040114 8040416 -274153248 + AluSg SINE Alu 1 305 -5 644 302 115 75 chr1 8040416 8040546 -274153118 + L1M4 LINE L1 3659 3782 -2364 1711 165 10 3 chr1 8040617 8040908 -274152756 - AluJb SINE Alu -19 293 1 512 201 120 37 chr1 8040908 8040942 -274152722 + L1M4 LINE L1 4386 4416 -1730 1958 133 3 3 chr1 8040942 8041251 -274152413 + AluSx SINE Alu 1 309 -3 512 201 120 37 chr1 8041251 8041438 -274152226 + L1M4 LINE L1 4416 4610 -1536 521 95 0 0 chr1 8041476 8041550 -274152114 + AluSp/q SINE Alu 231 304 -9 295 188 24 35 chr1 8041552 8041637 -274152027 + L1M4 LINE L1 4638 4721 -1425 354 295 33 0 chr1 8041646 8041768 -274151896 - L1MC/D LINE L1 -2053 5755 5630 336 283 65 7 chr1 8041759 8041897 -274151767 - L1MC/D LINE L1 -2401 5407 5262 * 506 127 0 0 chr1 8041900 8041979 -274151685 - MER116 DNA Mariner -1 79 1 1948 131 3 0 chr1 8042032 8042322 -274151342 - AluSx SINE Alu -21 291 1 236 285 118 82 chr1 8042322 8042513 -274151151 - L1MC/D LINE L1 -981 5165 4982 2106 102 7 0 chr1 8042513 8042807 -274150857 + AluSc SINE Alu 3 298 -11 236 285 118 82 chr1 8042807 8042996 -274150668 - L1MC/D LINE L1 -1164 4982 4801 1600 172 10 7 chr1 8042996 8043298 -274150366 - AluJb SINE Alu -9 303 1 236 285 118 82 chr1 8043298 8043474 -274150190 - L1MC/D LINE L1 -1345 4801 4588 314 261 71 43 chr1 8043500 8043919 -274149745 - L1MC/D LINE L1 -2695 3451 2933 2255 113 0 0 chr1 8043919 8044228 -274149436 - AluSg SINE Alu -1 309 1 314 261 71 43 chr1 8044228 8044373 -274149291 - L1MC/D LINE L1 -3213 2933 2793 288 268 134 39 chr1 8044373 8044500 -274149164 - MIR3 SINE MIR -67 141 3 21 0 0 0 chr1 8044600 8044621 -274149043 + AT_rich Low_complexity Low_complexity 1 21 0 2273 94 0 0 chr1 8045082 8045380 -274148284 + AluSx SINE Alu 1 298 -14 224 266 55 37 chr1 8047145 8047254 -274146410 + L2 LINE L2 1301 1411 -1903 319 282 148 52 chr1 8047495 8047920 -274145744 + MLT1J LTR MaLR 1 466 -45 3028 137 20 29 chr1 8047966 8048051 -274145613 + L1MA8 LINE L1 5539 5623 -677 2321 91 51 46 chr1 8048051 8048424 -274145240 - THE1C LTR MaLR 0 375 1 3028 137 20 29 chr1 8048424 8048837 -274144827 + L1MA8 LINE L1 5623 6002 -298 654 206 8 8 chr1 8048837 8048968 -274144696 + FLAM_A SINE Alu 2 132 -1 3028 137 20 29 chr1 8048968 8049075 -274144589 + L1MA8 LINE L1 6002 6108 -192 1002 176 16 27 chr1 8049101 8049155 -274144509 - AluSx SINE Alu -126 186 133 2067 98 3 33 chr1 8049155 8049462 -274144202 - AluSg1 SINE Alu -11 298 1 1002 176 16 27 chr1 8049462 8049595 -274144069 - AluSx SINE Alu -179 133 1 1599 126 0 41 chr1 8049628 8049949 -274143715 + AluSx SINE Alu 1 309 0 448 100 0 0 chr1 8049949 8050009 -274143655 + Alu SINE Alu 230 289 -21 1265 134 0 5 chr1 8050026 8050236 -274143428 - AluSg/x SINE Alu 0 306 98 1631 142 3 42 chr1 8050359 8050648 -274143016 + AluJb SINE Alu 5 282 -30 785 183 0 0 chr1 8050665 8050791 -274142873 - FLAM_C SINE Alu -3 130 5 252 0 0 0 chr1 8050808 8050836 -274142828 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 204 311 20 66 chr1 8050838 8050989 -274142675 - L3b LINE CR1 -258 1325 1182 233 0 62 0 chr1 8051257 8051289 -274142375 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1899 133 0 3 chr1 8051293 8051578 -274142086 - AluSg SINE Alu -26 284 1 2102 107 0 0 chr1 8051602 8051891 -274141773 - AluSx SINE Alu -17 295 7 1994 112 3 23 chr1 8051943 8052272 -274141392 + AluSq SINE Alu 1 313 0 1306 74 0 0 chr1 8052272 8052434 -274141230 + AluSg/x SINE Alu 134 295 -17 1523 164 0 48 chr1 8052593 8052903 -274140761 - AluJb SINE Alu -8 304 10 1119 176 27 27 chr1 8053350 8053572 -274140092 - AluJb SINE Alu -10 302 81 896 202 39 6 chr1 8053902 8054080 -274139584 + MIR SINE MIR 19 202 -60 959 174 10 20 chr1 8054184 8054380 -274139284 - AluJo SINE Alu -13 299 106 2903 72 3 8 chr1 8054380 8054753 -274138911 + THE1C LTR MaLR 1 371 -4 723 183 0 0 chr1 8054753 8054867 -274138797 - AluJo SINE Alu -187 115 1 2134 122 3 3 chr1 8055565 8055877 -274137787 + AluSq SINE Alu 1 312 -1 613 237 34 31 chr1 8056014 8056223 -274137441 - MIR SINE MIR -49 213 7 2341 74 0 0 chr1 8056271 8056569 -274137095 - AluSq SINE Alu -15 298 1 322 282 237 1 chr1 8057367 8057555 -274136109 - MIR SINE MIR -11 251 23 460 278 92 21 chr1 8057891 8058146 -274135518 + L1M4 LINE L1 2229 2507 -3639 2010 98 0 80 chr1 8058146 8058471 -274135193 + AluSx SINE Alu 1 299 -13 460 278 92 21 chr1 8058471 8058499 -274135165 + L1M4 LINE L1 2507 2532 -3614 438 125 0 9 chr1 8058549 8058812 -274134852 + AluSq SINE Alu 1 309 -4 347 309 31 24 chr1 8058815 8058892 -274134772 + L1M4 LINE L1 2609 2684 -3462 2164 103 0 0 chr1 8058892 8059193 -274134471 - AluSg SINE Alu -9 301 1 347 309 31 24 chr1 8059193 8059403 -274134261 + L1M4 LINE L1 2684 2898 -3248 23 0 0 0 chr1 8059430 8059453 -274134211 + AT_rich Low_complexity Low_complexity 1 23 0 1317 290 79 16 chr1 8059480 8060274 -274133390 + L1M4 LINE L1 3002 3845 -2301 778 218 58 180 chr1 8060304 8061044 -274132620 + MER21B LTR ERV1 13 733 -198 470 255 69 71 chr1 8061131 8061289 -274132375 + L1M4 LINE L1 3890 4047 -2099 2027 127 3 3 chr1 8061289 8061597 -274132067 - AluSq SINE Alu -5 308 1 470 255 69 71 chr1 8061597 8061917 -274131747 + L1M4 LINE L1 4047 4367 -1779 2152 92 3 3 chr1 8062041 8062335 -274131329 - AluSg SINE Alu -16 294 1 1920 98 63 3 chr1 8062337 8062622 -274131042 - AluSg SINE Alu -8 302 1 839 156 38 44 chr1 8062690 8062850 -274130814 + AluJb SINE Alu 137 295 -17 1326 203 48 29 chr1 8062855 8063165 -274130499 + L1ME2 LINE L1 5727 6042 -122 1623 161 10 30 chr1 8063165 8063464 -274130200 - AluJb SINE Alu -19 293 1 1937 110 18 4 chr1 8063482 8063763 -274129901 - AluSg SINE Alu -25 285 1 364 221 11 0 chr1 8063782 8063877 -274129787 + L1MA10 LINE L1 6225 6320 -14 1493 153 38 24 chr1 8063955 8064243 -274129421 - AluJo SINE Alu -9 303 12 1398 111 0 0 chr1 8064260 8064450 -274129214 - AluSg/x SINE Alu -13 297 108 444 131 0 0 chr1 8064450 8064511 -274129153 - AluS SINE Alu -247 63 3 829 143 0 7 chr1 8064521 8064661 -274129003 - AluJb SINE Alu -18 294 156 2069 116 3 3 chr1 8065245 8065546 -274128118 - AluSx SINE Alu -11 301 1 2174 91 0 10 chr1 8065829 8065964 -274127700 + AluSx SINE Alu 1 136 -176 2347 70 0 0 chr1 8065964 8066263 -274127401 + AluY SINE Alu 1 299 -12 2174 91 0 10 chr1 8066263 8066424 -274127240 + AluSx SINE Alu 136 294 -18 1717 160 3 22 chr1 8066506 8066824 -274126840 + AluJb SINE Alu 1 312 0 917 173 0 0 chr1 8066824 8066986 -274126678 + AluJo/FRAM SINE Alu 144 305 -7 482 325 202 22 chr1 8067232 8067598 -274126066 + L2 LINE L2 2840 3271 -1 895 110 0 0 chr1 8067925 8068052 -274125612 - FLAM_C SINE Alu -16 127 1 654 101 0 0 chr1 8068224 8068313 -274125351 + AluSx SINE Alu 4 92 -221 2271 81 0 7 chr1 8068313 8068609 -274125055 + AluY SINE Alu 1 294 -17 1468 92 53 0 chr1 8068609 8068813 -274124851 + AluSx SINE Alu 71 287 -23 27 29 0 0 chr1 8069550 8069584 -274124080 + AT_rich Low_complexity Low_complexity 1 34 0 256 188 29 0 chr1 8069758 8069827 -274123837 + CT-rich Low_complexity Low_complexity 2 72 0 1802 128 4 11 chr1 8070226 8070500 -274123164 - AluSq SINE Alu -41 272 1 2062 116 7 19 chr1 8070509 8070682 -274122982 - AluSp SINE Alu -7 306 137 2092 96 28 0 chr1 8070682 8070973 -274122691 - AluSg SINE Alu -9 301 3 2062 116 7 19 chr1 8070973 8071109 -274122555 - AluSp SINE Alu -176 137 1 2001 119 0 0 chr1 8071725 8072011 -274121653 - AluSx SINE Alu -18 294 9 351 0 0 0 chr1 8072057 8072096 -274121568 + (TG)n Simple_repeat Simple_repeat 1 39 0 27 29 0 0 chr1 8072644 8072678 -274120986 + AT_rich Low_complexity Low_complexity 1 34 0 724 157 9 0 chr1 8072678 8072793 -274120871 - AluJb SINE Alu -194 118 3 580 275 30 67 chr1 8073500 8073596 -274120068 - MLT1I LTR MaLR -150 259 161 2117 138 32 35 chr1 8073596 8073972 -274119692 - THE1C LTR MaLR 0 375 1 580 275 30 67 chr1 8073972 8074102 -274119562 - MLT1I LTR MaLR -248 161 42 1574 167 13 45 chr1 8074102 8074241 -274119423 + AluJo SINE Alu 1 143 -169 2040 73 0 8 chr1 8074241 8074500 -274119164 + AluSc SINE Alu 40 296 -13 1574 167 13 45 chr1 8074500 8074671 -274118993 + AluJo SINE Alu 143 301 -11 580 275 30 67 chr1 8074671 8074712 -274118952 - MLT1I LTR MaLR -367 42 1 1895 185 22 53 chr1 8074863 8075042 -274118622 + L1MB8 LINE L1 5724 5907 -271 2401 66 3 13 chr1 8075042 8075343 -274118321 + AluY SINE Alu 2 299 -12 1895 185 22 53 chr1 8075343 8075616 -274118048 + L1MB8 LINE L1 5907 6162 -16 289 264 88 22 chr1 8075999 8076090 -274117574 + L2 LINE L2 3155 3251 -21 217 104 0 42 chr1 8076092 8076140 -274117524 + (TAA)n Simple_repeat Simple_repeat 3 48 0 550 75 0 0 chr1 8076204 8076271 -274117393 - AluSp/q SINE Alu -84 229 163 812 132 5 138 chr1 8076275 8076428 -274117236 + L1MB7 LINE L1 6002 6127 -57 1842 138 38 28 chr1 8076428 8076717 -274116947 + AluJb SINE Alu 1 292 -20 812 132 5 138 chr1 8076717 8076752 -274116912 + L1MB7 LINE L1 6127 6165 -19 2259 121 0 0 chr1 8078088 8078393 -274115271 + AluSq SINE Alu 1 305 -8 1266 260 39 41 chr1 8078702 8078903 -274114761 + MLT2C2 LTR ERVL 1 201 -263 2434 77 3 10 chr1 8078903 8079215 -274114449 + AluSg SINE Alu 1 310 0 2324 109 3 0 chr1 8079217 8079521 -274114143 + AluSp SINE Alu 1 305 -8 1266 260 39 41 chr1 8079521 8079563 -274114101 + MLT2C2 LTR ERVL 202 243 -221 752 172 0 26 chr1 8079563 8079701 -274113963 + L1MB3 LINE L1 6035 6170 -13 1895 193 25 6 chr1 8079701 8080058 -274113606 + MLT1A1 LTR MaLR 1 364 -1 752 172 0 26 chr1 8080058 8080070 -274113594 + L1MB3 LINE L1 6170 6181 -2 1266 260 39 41 chr1 8080070 8080083 -274113581 + MLT2C2 LTR ERVL 243 255 -209 1821 145 0 30 chr1 8080083 8080379 -274113285 + AluJb SINE Alu 1 287 -25 1266 260 39 41 chr1 8080379 8080582 -274113082 + MLT2C2 LTR ERVL 255 464 0 289 304 63 0 chr1 8081353 8081432 -274112232 + MIR SINE MIR 23 106 -102 380 144 10 31 chr1 8081570 8081667 -274111997 + CT-rich Low_complexity Low_complexity 3 97 0 793 149 0 28 chr1 8081667 8081848 -274111816 + (TTC)n Simple_repeat Simple_repeat 2 177 0 1028 105 0 0 chr1 8081850 8081983 -274111681 - FLAM_C SINE Alu 0 133 1 1921 233 136 21 chr1 8082188 8082848 -274110816 - MER21B LTR ERV1 -127 736 1 2440 92 0 0 chr1 8082878 8083183 -274110481 - AluSx SINE Alu -7 305 1 1094 170 0 0 chr1 8083547 8083718 -274109946 + AluJb SINE Alu 130 300 -12 1894 146 3 55 chr1 8084938 8085267 -274108397 + AluJb SINE Alu 1 312 0 5148 110 100 3 chr1 8085794 8086547 -274107117 + LTR12 LTR ERV1 1 826 0 316 321 121 0 chr1 8086699 8086839 -274106825 + MIR3 SINE MIR 51 207 -1 2199 120 0 7 chr1 8086942 8087241 -274106423 - AluSx SINE Alu -15 297 1 1591 161 49 18 chr1 8087573 8087858 -274105806 + AluJb SINE Alu 1 294 -18 2097 187 29 37 chr1 8088101 8088224 -274105440 - L1MD3 LINE L1 0 7995 7873 2326 103 7 0 chr1 8088224 8088524 -274105140 - AluSx SINE Alu -6 306 5 2097 187 29 37 chr1 8088524 8088930 -274104734 - L1MD3 LINE L1 -122 7873 5815 225 108 0 0 chr1 8088931 8088968 -274104696 + (T)n Simple_repeat Simple_repeat 1 37 0 1132 132 5 63 chr1 8088983 8089173 -274104491 - AluJo SINE Alu -133 179 1 598 226 0 0 chr1 8089173 8089297 -274104367 - L1MD3 LINE L1 -519 5825 5702 2142 144 0 0 chr1 8089455 8089761 -274103903 + AluSx SINE Alu 1 306 -6 696 156 0 67 chr1 8089934 8090069 -274103595 + FLAM_C SINE Alu 14 139 -4 225 253 152 72 chr1 8090518 8090553 -274103111 - HAL1 LINE L1 -125 2382 2351 1173 83 6 24 chr1 8090553 8090721 -274102943 - L1PA10 LINE L1 -3 6165 6001 225 253 152 72 chr1 8090721 8090800 -274102864 - HAL1 LINE L1 -156 2351 2280 2190 101 3 10 chr1 8090800 8091098 -274102566 - AluSx SINE Alu -16 296 1 225 253 152 72 chr1 8091098 8091604 -274102060 - HAL1 LINE L1 -227 2280 1675 296 158 66 26 chr1 8091933 8092009 -274101655 - MER5B DNA MER1_type -95 83 5 2362 98 0 19 chr1 8092354 8092671 -274100993 - AluY SINE Alu 0 311 1 1964 135 45 0 chr1 8092720 8093008 -274100656 + AluJb SINE Alu 1 301 -11 278 323 8 53 chr1 8093317 8093450 -274100214 + MIR SINE MIR 56 182 -80 672 205 145 0 chr1 8093794 8093960 -274099704 - MLT1B LTR MaLR 0 390 201 2027 150 0 3 chr1 8093990 8094303 -274099361 - AluJb SINE Alu 0 312 1 2342 80 0 10 chr1 8094353 8094679 -274098985 - AluY SINE Alu 0 311 1 586 176 55 93 chr1 8094815 8094997 -274098667 - MLT1B LTR MaLR -211 179 5 279 0 0 0 chr1 8094999 8095030 -274098634 + (CA)n Simple_repeat Simple_repeat 1 31 0 1829 176 28 11 chr1 8095253 8095616 -274098048 + L1MA4 LINE L1 5914 6282 -18 2201 119 0 0 chr1 8095617 8095911 -274097753 - AluSx SINE Alu -18 294 1 185 62 0 31 chr1 8096820 8096852 -274096812 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1937 141 0 14 chr1 8096854 8097138 -274096526 - AluJb SINE Alu -28 284 5 2300 101 0 0 chr1 8097314 8097610 -274096054 + AluSc SINE Alu 1 296 -13 791 211 78 14 chr1 8097681 8097899 -274095765 + Zaphod DNA AcHobo 3800 4031 0 384 217 30 55 chr1 8097917 8097948 -274095716 - MLT1J LTR MaLR -172 443 413 1803 148 42 0 chr1 8097948 8098232 -274095432 - AluJo SINE Alu -16 296 1 384 217 30 55 chr1 8098232 8098348 -274095316 - MLT1J LTR MaLR -202 413 224 2352 112 0 3 chr1 8098467 8098780 -274094884 - AluSq SINE Alu -1 312 1 312 70 0 0 chr1 8098781 8098824 -274094840 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1075 134 0 0 chr1 8098824 8098973 -274094691 - AluSg/x SINE Alu -27 283 135 286 288 0 12 chr1 8099008 8099088 -274094576 - MLT1L LTR MaLR -536 79 1 2060 118 3 58 chr1 8099989 8100319 -274093345 - AluSx SINE Alu 0 312 1 626 189 39 8 chr1 8100614 8100741 -274092923 - FLAM_C SINE Alu -2 131 1 1937 139 7 10 chr1 8100791 8101094 -274092570 + AluJb SINE Alu 1 302 -10 2369 82 0 13 chr1 8102164 8102469 -274091195 - AluY SINE Alu -10 301 1 2121 120 3 7 chr1 8102776 8103077 -274090587 - AluJo SINE Alu -2 310 11 1643 172 43 13 chr1 8103955 8104258 -274089406 + AluSx SINE Alu 1 312 0 838 281 46 7 chr1 8104556 8104862 -274088802 + MLT2E LTR ERVL 2 319 -309 425 265 75 40 chr1 8104957 8105157 -274088507 + L1MC5 LINE L1 7717 7923 -38 746 152 91 15 chr1 8106431 8106563 -274087101 + FLAM_C SINE Alu 2 143 0 32 43 0 0 chr1 8106563 8106609 -274087055 + AT_rich Low_complexity Low_complexity 1 46 0 533 202 0 0 chr1 8106617 8106706 -274086958 - AluJb SINE Alu -82 230 142 567 301 62 51 chr1 8106718 8107127 -274086537 + MER34 LTR ERV1 50 466 -76 2028 140 3 31 chr1 8107127 8107448 -274086216 - AluJb SINE Alu 0 312 1 567 301 62 51 chr1 8107448 8107526 -274086138 + MER34 LTR ERV1 466 542 0 349 267 67 7 chr1 8107769 8107919 -274085745 - L1MA10 LINE L1 0 6334 6176 2263 100 7 0 chr1 8107964 8108253 -274085411 + AluSx SINE Alu 1 291 -21 2582 79 0 0 chr1 8108665 8108969 -274084695 - AluSx SINE Alu -8 304 1 1785 159 0 40 chr1 8108983 8109285 -274084379 - AluJb SINE Alu -22 290 1 1782 151 10 30 chr1 8109359 8109657 -274084007 + AluJo SINE Alu 14 305 -7 2058 121 109 73 chr1 8109843 8110022 -274083642 + MSTA LTR MaLR 1 172 -256 2541 76 0 0 chr1 8110022 8110325 -274083339 + AluSx SINE Alu 1 303 -9 2058 121 109 73 chr1 8110325 8110557 -274083107 + MSTA LTR MaLR 172 427 -1 2334 94 3 0 chr1 8110667 8110965 -274082699 - AluSx SINE Alu -13 299 1 2207 113 27 0 chr1 8111141 8111442 -274082222 + AluSx SINE Alu 1 309 -3 1922 151 3 40 chr1 8111592 8111916 -274081748 + AluJo SINE Alu 1 312 0 215 207 0 52 chr1 8112378 8112436 -274081228 + CT-rich Low_complexity Low_complexity 5 59 0 2206 163 14 8 chr1 8112487 8112850 -274080814 - MLT1A1 LTR MaLR 0 365 1 2272 97 82 48 chr1 8112973 8113282 -274080382 + THE1B LTR MaLR 1 325 -39 2297 105 3 0 chr1 8113282 8113586 -274080078 - AluSq SINE Alu -8 305 1 2272 97 82 48 chr1 8113586 8113628 -274080036 + THE1B LTR MaLR 325 364 0 1843 214 165 11 chr1 8114081 8114249 -274079415 + L1MC4 LINE L1 6459 6600 -1442 2218 111 10 7 chr1 8114249 8114547 -274079117 - AluSx SINE Alu -13 299 1 1843 214 165 11 chr1 8114547 8114905 -274078759 + L1MC4 LINE L1 6600 7066 -976 1079 286 186 19 chr1 8114913 8115160 -274078504 + L1MC4 LINE L1 7240 7444 -598 2994 162 25 102 chr1 8115160 8115425 -274078239 + LTR8 LTR ERV1 1 285 -406 2458 89 3 6 chr1 8115425 8115738 -274077926 + AluSp SINE Alu 1 312 -1 2994 162 25 102 chr1 8115738 8116218 -274077446 + LTR8 LTR ERV1 285 689 -2 1079 286 186 19 chr1 8116218 8116433 -274077231 + L1MC4 LINE L1 7444 7622 -420 4040 91 19 2 chr1 8116433 8116974 -274076690 + MER41A LTR ERV1 1 550 -4 1079 286 186 19 chr1 8116974 8117079 -274076585 + L1MC4 LINE L1 7622 7903 -139 352 381 30 0 chr1 8117394 8117528 -274076136 + L2 LINE L2 3175 3312 -1 1968 160 3 3 chr1 8117593 8117905 -274075759 - AluJb SINE Alu 0 312 1 331 256 104 26 chr1 8119252 8119512 -274074152 - LTR48 LTR ERV1 -3 738 387 413 279 16 23 chr1 8119610 8119739 -274073925 - MER34 LTR ERV1 -411 131 4 21 36 0 0 chr1 8119748 8119776 -274073888 + AT_rich Low_complexity Low_complexity 1 28 0 2280 127 0 0 chr1 8119777 8120085 -274073579 + AluSx SINE Alu 1 308 -4 876 236 56 23 chr1 8120180 8120396 -274073268 + MIR SINE MIR 28 250 -12 2324 113 0 3 chr1 8120576 8120886 -274072778 - AluSx SINE Alu -3 309 1 2431 85 3 0 chr1 8121540 8121846 -274071818 + AluY SINE Alu 1 307 -4 300 27 0 0 chr1 8122219 8122256 -274071408 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 1878 113 50 7 chr1 8123071 8123353 -274070311 - AluSx SINE Alu -18 294 1 1661 180 65 0 chr1 8124258 8124536 -274069128 - AluJo SINE Alu -16 296 1 274 182 0 39 chr1 8124541 8124618 -274069046 - L1MC2 LINE L1 0 6344 6271 36 23 0 0 chr1 8124727 8124770 -274068894 + AT_rich Low_complexity Low_complexity 1 43 0 2000 145 3 13 chr1 8125072 8125376 -274068288 + AluJb SINE Alu 1 301 -11 466 224 56 8 chr1 8125482 8125607 -274068057 + MLT1J2 LTR MaLR 23 153 -297 244 254 16 0 chr1 8125686 8125749 -274067915 + MLT1J2 LTR MaLR 266 329 -121 255 286 41 61 chr1 8125873 8125971 -274067693 - L3 LINE CR1 -943 634 539 4138 133 31 2 chr1 8126120 8126737 -274066927 + MER41B LTR ERV1 1 635 0 1253 113 0 0 chr1 8127216 8127384 -274066280 + AluSq SINE Alu 140 307 -6 2110 128 0 39 chr1 8128938 8129244 -274064420 - AluJo SINE Alu -18 294 1 355 317 7 7 chr1 8129439 8129581 -274064083 - L1M4 LINE L1 -3329 2817 2676 2243 108 0 10 chr1 8130068 8130372 -274063292 + AluSx SINE Alu 1 301 -11 2009 119 0 11 chr1 8130372 8130657 -274063007 + AluSc SINE Alu 1 282 -27 502 218 0 0 chr1 8130773 8130874 -274062790 + U6 snRNA snRNA 1 101 -6 236 230 159 0 chr1 8131114 8131240 -274062424 + L1M4 LINE L1 2897 3042 -3104 2393 85 0 7 chr1 8131336 8131643 -274062021 + AluSc SINE Alu 2 306 -3 416 153 0 12 chr1 8131648 8131733 -274061931 - MER96B DNA MER1_type? -266 151 68 306 164 33 0 chr1 8131936 8131997 -274061667 + MER45 DNA AcHobo 44 106 -1475 239 175 0 0 chr1 8131991 8132031 -274061633 + MER45 DNA AcHobo 1542 1581 0 * 686 239 137 9 chr1 8132951 8133241 -274060423 + MER58B DNA MER1_type 6 341 0 2488 65 0 0 chr1 8134079 8134369 -274059295 + AluY SINE Alu 1 290 -21 2844 80 0 3 chr1 8134400 8134763 -274058901 + THE1B LTR MaLR 1 362 -2 572 310 57 27 chr1 8135016 8135351 -274058313 - L1ME4a LINE L1 -255 5866 5522 2388 100 0 0 chr1 8135368 8135668 -274057996 - AluSg SINE Alu -10 300 1 1652 130 8 8 chr1 8137060 8137333 -274056331 - AluJb SINE Alu 0 319 47 1985 145 3 0 chr1 8138063 8138353 -274055311 + AluJb SINE Alu 1 291 -21 907 117 0 0 chr1 8138361 8138481 -274055183 + AluJb SINE Alu 1 120 -192 255 213 0 0 chr1 8138499 8138574 -274055090 + A-rich Low_complexity Low_complexity 1 75 0 2488 77 3 0 chr1 8138987 8139286 -274054378 + AluSx SINE Alu 1 300 -12 2504 51 3 0 chr1 8139706 8140000 -274053664 + AluY SINE Alu 1 295 -16 1037 194 0 0 chr1 8140139 8140314 -274053350 - AluJ SINE Alu -13 299 125 90 77 0 0 chr1 8140314 8140509 -274053155 + AT_rich Low_complexity Low_complexity 1 195 0 870 143 0 0 chr1 8140516 8140635 -274053029 - AluJ SINE Alu -193 119 1 2426 97 0 0 chr1 8142859 8143169 -274050495 - AluSq SINE Alu -3 310 1 715 135 0 0 chr1 8143548 8143659 -274050005 - HY1 scRNA scRNA -1 111 1 2172 110 3 3 chr1 8143665 8143977 -274049687 - AluSx SINE Alu 0 312 1 690 225 22 0 chr1 8144060 8144198 -274049466 - FLAM_C SINE Alu -1 142 2 2444 246 44 28 chr1 8144501 8144722 -274048942 - MER82 DNA MER2_type 0 653 437 2320 87 0 3 chr1 8144722 8145029 -274048635 - AluSp SINE Alu 0 306 1 2444 246 44 28 chr1 8145029 8145447 -274048217 - MER82 DNA MER2_type -216 437 3 2397 86 0 0 chr1 8148210 8148511 -274045153 - AluSg SINE Alu -9 301 1 1461 85 0 0 chr1 8149283 8149541 -274044123 + (TCCA)n Simple_repeat Simple_repeat 1 258 0 1105 166 10 30 chr1 8149643 8149842 -274043822 + AluJo SINE Alu 16 210 -102 1426 89 0 31 chr1 8149858 8150049 -274043615 - AluSq SINE Alu -52 261 77 957 152 0 26 chr1 8150051 8150202 -274043462 + AluJo/FRAM SINE Alu 156 302 -10 794 131 26 13 chr1 8150205 8150871 -274042793 + (TG)n Simple_repeat Simple_repeat 1 674 0 239 270 34 27 chr1 8150886 8151034 -274042630 + (TG)n Simple_repeat Simple_repeat 1 149 0 671 163 59 0 chr1 8153385 8153520 -274040144 + L1MB4 LINE L1 6038 6180 0 411 226 111 51 chr1 8153668 8153903 -274039761 + HAL1 LINE L1 923 1171 -1336 902 328 75 34 chr1 8154008 8154572 -274039092 + ERVL LTR ERVL 4144 4730 -1034 201 301 136 19 chr1 8154847 8154950 -274038714 + MIR SINE MIR 94 208 -54 207 0 0 0 chr1 8155484 8155507 -274038157 + (CA)n Simple_repeat Simple_repeat 2 24 0 911 263 55 25 chr1 8156387 8156748 -274036916 + L1MC5 LINE L1 7073 7444 -517 1952 271 68 6 chr1 8156864 8157494 -274036170 + ERVL LTR ERVL 24 692 -5072 1549 218 13 7 chr1 8157688 8157986 -274035678 + AluJb SINE Alu 1 300 -12 380 175 25 0 chr1 8158387 8158467 -274035197 - L1 LINE L1 -2515 3631 3550 273 376 23 50 chr1 8158482 8158514 -274035150 - MIR SINE MIR -25 237 206 2100 117 35 0 chr1 8158514 8158796 -274034868 - AluSg SINE Alu -18 292 1 273 376 23 50 chr1 8158796 8158981 -274034683 - MIR SINE MIR -56 206 26 991 220 45 19 chr1 8159192 8159456 -274034208 + MER58 DNA MER1_type 1 271 -2149 937 119 0 0 chr1 8159556 8159682 -274033982 - AluJb SINE Alu -186 126 1 28 29 0 0 chr1 8159682 8159717 -274033947 + AT_rich Low_complexity Low_complexity 1 35 0 254 270 175 22 chr1 8161449 8161586 -274032078 + MIR SINE MIR 99 256 -6 265 249 74 85 chr1 8161857 8162046 -274031618 - L2 LINE L2 -368 2946 2760 256 128 0 0 chr1 8163081 8163120 -274030544 + Alu SINE Alu 1 39 -263 376 292 103 77 chr1 8163340 8163535 -274030129 + L2 LINE L2 3043 3242 -30 664 305 65 4 chr1 8164091 8164337 -274029327 - MIR SINE MIR 0 262 2 207 0 0 0 chr1 8164895 8164918 -274028746 + (A)n Simple_repeat Simple_repeat 1 23 0 650 286 84 26 chr1 8165103 8165330 -274028334 + MIR SINE MIR 2 241 -21 239 340 28 0 chr1 8166727 8166833 -274026831 + GA-rich Low_complexity Low_complexity 2 110 0 1074 243 80 10 chr1 8167086 8167386 -274026278 + L2 LINE L2 1598 1918 -1396 260 286 152 18 chr1 8168393 8168505 -274025159 + L2 LINE L2 3139 3265 -7 262 322 178 0 chr1 8169465 8169583 -274024081 - L2 LINE L2 0 3272 3134 828 228 94 20 chr1 8169764 8169966 -274023698 + MER20 DNA MER1_type 1 217 -2 306 261 33 33 chr1 8170096 8170188 -274023476 - L1MC4 LINE L1 -1343 6699 6608 746 207 60 0 chr1 8171451 8171601 -274022063 + MIR SINE MIR 77 235 -27 592 285 52 10 chr1 8171745 8171938 -274021726 - MIR SINE MIR -26 236 36 247 261 49 63 chr1 8171993 8172135 -274021529 - L2 LINE L2 -93 3220 3081 2293 119 0 0 chr1 8172628 8172923 -274020741 + AluSx SINE Alu 1 295 -17 605 199 175 18 chr1 8173065 8173231 -274020433 - MIR SINE MIR -39 223 32 269 208 19 0 chr1 8176452 8176505 -274017159 - L2 LINE L2 -215 3057 3004 282 326 90 17 chr1 8176524 8176702 -274016962 - L2 LINE L2 0 3313 3123 530 301 78 5 chr1 8176956 8177175 -274016489 + MIR SINE MIR 16 250 -12 181 319 0 29 chr1 8177201 8177270 -274016394 + MIR SINE MIR 190 256 -6 227 266 234 0 chr1 8177933 8178027 -274015637 - MIR SINE MIR -116 146 31 363 206 0 0 chr1 8178558 8178631 -274015033 - MER116 DNA Mariner -3 77 5 257 236 255 0 chr1 8178703 8178809 -274014855 - L2 LINE L2 -11 3302 3170 714 150 0 0 chr1 8179222 8179335 -274014329 + L1PB4 LINE L1 6037 6149 -7 664 261 74 82 chr1 8180152 8180555 -274013109 - MLT1L LTR MaLR -9 606 207 246 268 0 0 chr1 8180531 8180587 -274013077 - MLT1J LTR MaLR -345 166 111 * 4005 97 26 3 chr1 8180962 8181529 -274012135 + THE1A-int LTR MaLR 1001 1580 0 2697 82 6 0 chr1 8181529 8181882 -274011782 + THE1A LTR MaLR 1 355 0 1278 277 254 23 chr1 8182671 8183466 -274010198 - L2 LINE L2 -2094 1220 242 1120 222 14 0 chr1 8184106 8184327 -274009337 + MER58A DNA MER1_type 1 224 0 10866 17 1 0 chr1 8185278 8187297 -274006367 + L1PA3 LINE L1 4131 6150 -5 842 191 16 31 chr1 8187507 8187701 -274005963 + MER20 DNA MER1_type 29 219 0 2132 111 0 7 chr1 8187850 8188158 -274005506 - AluSx SINE Alu 0 306 1 555 311 34 0 chr1 8189472 8189649 -274004015 + MIR SINE MIR 2 184 -78 307 153 141 59 chr1 8189752 8189837 -274003827 + MIR SINE MIR 171 262 0 743 352 70 26 chr1 8190151 8190878 -274002786 - L2 LINE L2 -38 3234 2475 1302 206 4 8 chr1 8190878 8191130 -274002534 + AluJo SINE Alu 49 299 -13 1029 98 23 0 chr1 8191413 8191546 -274002118 + AluSq/x SINE Alu 1 136 -177 2237 121 3 0 chr1 8191546 8191852 -274001812 + AluSx SINE Alu 1 307 -5 21 36 0 0 chr1 8192331 8192359 -274001305 + AT_rich Low_complexity Low_complexity 1 28 0 1178 178 5 10 chr1 8192469 8192677 -274000987 - AluJb SINE Alu -103 209 3 2240 93 3 22 chr1 8192918 8193229 -274000435 + AluSg SINE Alu 1 305 -5 607 274 11 22 chr1 8193262 8193441 -274000223 - MIR SINE MIR -1 261 85 2029 127 3 7 chr1 8193524 8193824 -273999840 + AluY SINE Alu 3 301 -10 1950 165 0 0 chr1 8193831 8194140 -273999524 + AluSx SINE Alu 1 309 -3 23 101 0 0 chr1 8195146 8195225 -273998439 + AT_rich Low_complexity Low_complexity 1 79 0 189 74 0 0 chr1 8198387 8198414 -273995250 + (CA)n Simple_repeat Simple_repeat 2 28 0 23 33 0 0 chr1 8198872 8198902 -273994762 + AT_rich Low_complexity Low_complexity 1 30 0 2151 100 10 3 chr1 8199680 8199970 -273993694 + AluSq SINE Alu 9 300 -13 1438 189 111 4 chr1 8200785 8201055 -273992609 - AluJo SINE Alu -13 299 1 1774 173 3 10 chr1 8202017 8202318 -273991346 + AluJb SINE Alu 1 299 -13 1328 169 3 124 chr1 8202472 8202663 -273991001 - AluSp SINE Alu -1 312 182 2303 113 0 0 chr1 8202663 8202963 -273990701 - AluSx SINE Alu -12 300 1 1328 169 3 124 chr1 8202963 8203126 -273990538 - AluSp SINE Alu -131 182 1 1425 220 20 7 chr1 8203163 8203458 -273990206 + AluJo SINE Alu 1 299 -13 1038 90 23 0 chr1 8203742 8203875 -273989789 + AluSq/x SINE Alu 1 136 -176 2237 121 3 0 chr1 8203875 8204181 -273989483 + AluSx SINE Alu 1 307 -5 21 36 0 0 chr1 8204660 8204688 -273988976 + AT_rich Low_complexity Low_complexity 1 28 0 1178 178 5 10 chr1 8204798 8205006 -273988658 - AluJb SINE Alu -103 209 3 2240 93 3 22 chr1 8205247 8205558 -273988106 + AluSg SINE Alu 1 305 -5 607 274 11 22 chr1 8205591 8205770 -273987894 - MIR SINE MIR -1 261 85 2029 127 3 7 chr1 8205853 8206153 -273987511 + AluY SINE Alu 3 301 -10 1950 165 0 0 chr1 8206160 8206469 -273987195 + AluSx SINE Alu 1 309 -3 23 101 0 0 chr1 8207475 8207554 -273986110 + AT_rich Low_complexity Low_complexity 1 79 0 189 74 0 0 chr1 8210716 8210743 -273982921 + (CA)n Simple_repeat Simple_repeat 2 28 0 23 33 0 0 chr1 8211201 8211231 -273982433 + AT_rich Low_complexity Low_complexity 1 30 0 2151 100 10 3 chr1 8212009 8212299 -273981365 + AluSq SINE Alu 9 300 -13 232 244 35 58 chr1 8213014 8213100 -273980564 - L2 LINE L2 -1 3312 3229 428 294 65 30 chr1 8213157 8213358 -273980306 - MIR SINE MIR -39 223 16 211 354 46 39 chr1 8214827 8214957 -273978707 + L2 LINE L2 3133 3263 -9 349 240 10 20 chr1 8216051 8216151 -273977513 + MER94 DNA DNA 2 100 -34 21 36 0 0 chr1 8217235 8217263 -273976401 + AT_rich Low_complexity Low_complexity 1 28 0 225 0 0 0 chr1 8217425 8217450 -273976214 + (A)n Simple_repeat Simple_repeat 1 25 0 1974 130 0 14 chr1 8218108 8218392 -273975272 + AluSx SINE Alu 6 285 -27 185 261 138 0 chr1 8219595 8219660 -273974004 - MIR SINE MIR -112 150 77 216 0 0 0 chr1 8220079 8220103 -273973561 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 526 155 0 0 chr1 8220113 8220197 -273973467 - AluJ/FLAM SINE Alu -228 84 1 759 171 0 0 chr1 8220421 8220544 -273973120 - FLAM_C SINE Alu -20 123 1 3188 82 52 7 chr1 8221357 8221822 -273971842 + LTR19A LTR ERV1 1 486 0 26 0 0 0 chr1 8222280 8222306 -273971358 + AT_rich Low_complexity Low_complexity 1 26 0 1694 101 36 8 chr1 8222306 8222553 -273971111 + AluSx SINE Alu 44 297 -15 709 183 0 51 chr1 8225545 8225664 -273968000 + FRAM SINE Alu 33 146 -166 288 77 0 0 chr1 8225664 8225703 -273967961 + (CATA)n Simple_repeat Simple_repeat 1 39 0 709 183 0 51 chr1 8225703 8225720 -273967944 + FRAM SINE Alu 146 162 -14 819 195 6 30 chr1 8226193 8226357 -273967307 + FRAM SINE Alu 1 160 -16 1607 183 11 21 chr1 8228077 8228362 -273965302 + AluJo SINE Alu 1 282 -30 300 137 0 0 chr1 8228366 8228417 -273965247 + (CA)n Simple_repeat Simple_repeat 2 52 0 1740 173 7 7 chr1 8228584 8228890 -273964774 + AluJb SINE Alu 1 306 -6 2381 76 0 0 chr1 8229685 8229974 -273963690 - AluY SINE Alu -22 289 1 317 299 110 16 chr1 8230732 8230859 -273962805 - L2 LINE L2 -7 3265 3127 2149 96 7 0 chr1 8230877 8231226 -273962438 - AluSp SINE Alu 0 351 1 726 223 60 107 chr1 8231271 8231326 -273962338 + MLT1J LTR MaLR 6 62 -449 979 173 13 0 chr1 8231326 8231513 -273962151 + FRAM SINE Alu 1 53 0 726 223 60 107 chr1 8231513 8231754 -273961910 + MLT1J LTR MaLR 62 291 -220 27 0 0 0 chr1 8231890 8231917 -273961747 + AT_rich Low_complexity Low_complexity 1 27 0 1278 195 130 38 chr1 8232984 8233441 -273960223 - Charlie4a DNA MER1_type -15 493 3 2229 73 59 0 chr1 8233722 8234011 -273959653 - AluY SINE Alu -5 306 1 960 188 0 12 chr1 8234944 8235114 -273958550 + AluJb SINE Alu 136 303 -9 29 0 0 0 chr1 8237002 8237031 -273956633 + AT_rich Low_complexity Low_complexity 1 29 0 431 214 111 0 chr1 8237130 8237247 -273956417 - MIR SINE MIR -22 240 111 262 295 115 0 chr1 8237904 8237982 -273955682 - L2 LINE L2 -25 3288 3202 325 264 97 21 chr1 8238015 8238159 -273955505 - L2 LINE L2 -2308 1006 852 663 188 0 0 chr1 8239630 8239731 -273953933 - FLAM_A SINE Alu -41 101 1 267 265 167 61 chr1 8239944 8240076 -273953588 + MIR SINE MIR 63 208 -54 463 262 154 35 chr1 8240448 8240612 -273953052 - MER5A DNA MER1_type -1 188 2 1355 192 77 133 chr1 8241093 8241185 -273952479 + MLT1C LTR MaLR 1 97 -370 1575 195 6 31 chr1 8241185 8241503 -273952161 + AluJo SINE Alu 1 310 -2 1355 192 77 133 chr1 8241503 8241775 -273951889 + MLT1C LTR MaLR 97 332 -135 1317 162 178 0 chr1 8241775 8242028 -273951636 + AluJo SINE Alu 1 298 -14 1355 192 77 133 chr1 8242028 8242157 -273951507 + MLT1C LTR MaLR 332 467 0 348 24 0 0 chr1 8242574 8242615 -273951049 + (TG)n Simple_repeat Simple_repeat 2 42 0 865 207 177 10 chr1 8242904 8243171 -273950493 - L1ME3A LINE L1 -9 6161 5852 1811 167 0 0 chr1 8243181 8243468 -273950196 - AluJb SINE Alu -25 287 1 2358 90 0 0 chr1 8244384 8244683 -273948981 + AluSx SINE Alu 1 299 -13 182 200 33 17 chr1 8244947 8245007 -273948657 - L2 LINE L2 -342 2972 2912 1931 103 3 125 chr1 8245421 8245553 -273948111 + AluSx SINE Alu 5 75 -227 2381 82 0 0 chr1 8245553 8245847 -273947817 + AluSc SINE Alu 1 294 -15 1931 103 3 125 chr1 8245847 8246043 -273947621 + AluSx SINE Alu 75 293 -9 1547 201 15 0 chr1 8246068 8246341 -273947323 + AluJo SINE Alu 1 277 -35 897 194 25 0 chr1 8246517 8246677 -273946987 + AluJb SINE Alu 138 301 -11 875 225 25 0 chr1 8246756 8246916 -273946748 - FRAM SINE Alu -2 164 1 2305 152 24 8 chr1 8247405 8247774 -273945890 - THE1C LTR MaLR 0 375 1 578 218 0 0 chr1 8247832 8247933 -273945731 - FAM SINE Alu -83 102 2 261 235 147 20 chr1 8248042 8248144 -273945520 + MER103 DNA DNA 45 159 -7 2384 55 41 0 chr1 8248362 8248653 -273945011 + AluY SINE Alu 1 303 -8 1416 169 32 18 chr1 8248994 8249272 -273944392 - AluJo SINE Alu -30 282 1 1929 128 7 17 chr1 8249562 8249850 -273943814 - AluJb SINE Alu -4 308 24 2257 105 3 0 chr1 8250147 8250442 -273943222 - AluSx SINE Alu -16 296 1 192 226 0 0 chr1 8251163 8251225 -273942439 + (TCTCTG)n Simple_repeat Simple_repeat 5 66 0 733 197 0 8 chr1 8251767 8251899 -273941765 + FLAM_C SINE Alu 1 131 -2 2338 92 0 16 chr1 8251957 8252273 -273941391 + AluY SINE Alu 1 311 0 2059 127 20 0 chr1 8252501 8252793 -273940871 + AluSx SINE Alu 1 298 -14 26 0 0 0 chr1 8253071 8253097 -273940567 + AT_rich Low_complexity Low_complexity 1 26 0 264 308 132 0 chr1 8253134 8253225 -273940439 - L2 LINE L2 -2 3270 3168 2326 101 3 0 chr1 8253410 8253718 -273939946 + AluY SINE Alu 1 309 -2 2171 122 0 0 chr1 8254209 8254513 -273939151 + AluSx SINE Alu 1 304 -8 30 83 0 0 chr1 8254980 8255052 -273938612 + AT_rich Low_complexity Low_complexity 1 72 0 208 255 174 67 chr1 8255375 8255524 -273938140 - MIR SINE MIR -70 192 28 1002 254 195 45 chr1 8255827 8256816 -273936848 - L2 LINE L2 -4 3309 2169 1487 181 0 77 chr1 8257327 8257653 -273936011 + AluJo SINE Alu 1 301 -11 504 270 44 53 chr1 8257704 8257930 -273935734 + MIR SINE MIR 28 251 -11 237 298 16 99 chr1 8258424 8258545 -273935119 + L2 LINE L2 2579 2689 -625 326 143 14 29 chr1 8258575 8258645 -273935019 - L1MB8 LINE L1 0 6178 6110 214 258 147 85 chr1 8258693 8259046 -273934618 + L2 LINE L2 2819 3193 -79 329 310 148 35 chr1 8259111 8259482 -273934182 + L2 LINE L2 1939 2351 -963 791 136 0 9 chr1 8259497 8259607 -273934057 - AluJo SINE Alu -155 157 49 709 353 70 26 chr1 8259607 8260334 -273933330 + L2 LINE L2 2475 3234 -38 303 153 141 59 chr1 8260648 8260733 -273932931 - MIR SINE MIR 0 262 171 550 311 34 0 chr1 8260836 8261013 -273932651 - MIR SINE MIR -78 184 2 2134 111 0 7 chr1 8262327 8262635 -273931029 + AluSx SINE Alu 1 306 0 1171 190 14 23 chr1 8262784 8263005 -273930659 - MER20 DNA MER1_type 0 219 1 1702 190 36 12 chr1 8263481 8263858 -273929806 + L1MB8 LINE L1 5728 6115 -63 356 0 23 0 chr1 8263859 8263903 -273929761 + (TG)n Simple_repeat Simple_repeat 2 46 0 482 110 30 70 chr1 8263929 8263959 -273929705 + L1MB7 LINE L1 6089 6119 -65 482 0 17 0 chr1 8263959 8264017 -273929647 + (TG)n Simple_repeat Simple_repeat 2 60 0 1672 130 3 98 chr1 8264017 8264333 -273929331 - AluJb SINE Alu -26 286 1 482 110 30 70 chr1 8264333 8264401 -273929263 + L1MB7 LINE L1 6117 6184 0 996 233 324 29 chr1 8265289 8266116 -273927548 - L2 LINE L2 -3 3310 2183 725 147 0 66 chr1 8266922 8267058 -273926606 + FLAM_C SINE Alu 1 127 -16 1572 200 3 3 chr1 8267108 8267408 -273926256 - AluJo SINE Alu -12 300 1 2202 92 11 0 chr1 8268025 8268330 -273925334 - AluSq SINE Alu 0 308 1 1557 168 51 7 chr1 8268701 8268975 -273924689 + AluJb SINE Alu 6 291 -21 27 49 0 0 chr1 8268982 8269023 -273924641 + AT_rich Low_complexity Low_complexity 1 41 0 850 172 0 8 chr1 8270310 8270444 -273923220 + AluJ SINE Alu 1 133 -169 470 113 0 0 chr1 8270445 8270507 -273923157 + AluJ SINE Alu 120 181 -131 1142 123 0 0 chr1 8270507 8270661 -273923003 + AluSq SINE Alu 133 286 -27 528 16 0 0 chr1 8270661 8270722 -273922942 + (CATA)n Simple_repeat Simple_repeat 2 62 0 1414 167 31 0 chr1 8270722 8270949 -273922715 - MER46A DNA MER2_type -2 234 1 2342 95 13 0 chr1 8272082 8272388 -273921276 + AluSx SINE Alu 1 310 -2 494 284 44 38 chr1 8272592 8272775 -273920889 + MIR SINE MIR 65 248 -14 1807 86 11 156 chr1 8273298 8273657 -273920007 + AluSc SINE Alu 1 307 -2 987 176 40 10 chr1 8273852 8274051 -273919613 - MER3 DNA MER1_type -4 205 1 222 37 0 0 chr1 8277966 8277993 -273915671 + (A)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr1 8278574 8278595 -273915069 + AT_rich Low_complexity Low_complexity 1 21 0 1934 138 3 0 chr1 8278595 8278878 -273914786 + AluSq SINE Alu 1 284 -29 198 0 0 0 chr1 8278878 8278900 -273914764 + (CAAT)n Simple_repeat Simple_repeat 2 23 0 311 64 0 21 chr1 8279763 8279810 -273913854 + (TTCA)n Simple_repeat Simple_repeat 3 48 0 1802 174 3 0 chr1 8279810 8280092 -273913572 - AluJo SINE Alu -29 283 1 1296 63 0 84 chr1 8280374 8280564 -273913100 + AluY SINE Alu 1 174 -137 1067 269 161 81 chr1 8280762 8280915 -273912749 - L2 LINE L2 -934 2380 2241 1929 169 0 7 chr1 8280915 8281217 -273912447 - AluJb SINE Alu -12 300 1 1067 269 161 81 chr1 8281217 8281402 -273912262 - L2 LINE L2 -1073 2241 2072 2326 101 0 0 chr1 8281402 8281699 -273911965 + AluSq SINE Alu 1 297 -16 1067 269 161 81 chr1 8281699 8282424 -273911240 - L2 LINE L2 -1242 2072 1230 601 226 0 8 chr1 8282961 8283094 -273910570 + MER47A DNA MER2_type 1 132 -234 1051 188 99 14 chr1 8283094 8283218 -273910446 + AluJo SINE Alu 5 117 -195 1931 126 23 26 chr1 8283218 8283528 -273910136 + AluSx SINE Alu 1 309 -3 1051 188 99 14 chr1 8283528 8283626 -273910038 + AluJo SINE Alu 117 246 -66 236 255 0 0 chr1 8283633 8283680 -273909984 + (TCCA)n Simple_repeat Simple_repeat 4 50 0 1235 144 14 0 chr1 8283686 8283901 -273909763 + MER47A DNA MER2_type 148 365 -1 333 171 0 45 chr1 8283901 8283989 -273909675 + L1MB8 LINE L1 6094 6177 -1 1524 195 8 57 chr1 8285006 8285391 -273908273 - MLT1A2 LTR MaLR -8 366 1 2270 85 0 0 chr1 8285813 8286130 -273907534 - AluSc SINE Alu 0 317 1 821 140 54 59 chr1 8287157 8287279 -273906385 + MER2 DNA MER2_type 1 123 -222 2065 138 3 7 chr1 8287279 8287584 -273906080 - AluSx SINE Alu -8 304 1 821 140 54 59 chr1 8287584 8287647 -273906017 + MER2 DNA MER2_type 123 185 -160 4471 161 29 9 chr1 8287996 8288862 -273904802 + L1MC2 LINE L1 5461 6343 -1 4493 206 44 16 chr1 8289024 8289414 -273904250 + L1P4 LINE L1 4099 4477 -1691 2142 136 0 0 chr1 8289414 8289708 -273903956 + AluSg SINE Alu 1 294 -16 4493 206 44 16 chr1 8289708 8290403 -273903261 + L1P4 LINE L1 4477 5245 -923 1873 141 3 36 chr1 8290403 8290707 -273902957 + AluSx SINE Alu 1 294 -18 4493 206 44 16 chr1 8290707 8291264 -273902400 + L1P4 LINE L1 5245 5785 -383 1786 166 7 3 chr1 8291264 8291554 -273902110 + AluSx SINE Alu 1 291 -21 2202 114 0 3 chr1 8291561 8291867 -273901797 + AluSx SINE Alu 1 305 -7 21 36 0 0 chr1 8292260 8292288 -273901376 + AT_rich Low_complexity Low_complexity 1 28 0 2212 82 14 0 chr1 8292331 8292622 -273901042 - AluY SINE Alu -16 295 1 417 91 15 0 chr1 8292951 8293017 -273900647 - MER41B LTR ERV1 -88 547 481 22 56 0 0 chr1 8293017 8293053 -273900611 + AT_rich Low_complexity Low_complexity 1 36 0 730 146 0 83 chr1 8293608 8293752 -273899912 - FLAM_C SINE Alu -1 132 1 461 133 0 36 chr1 8293847 8293930 -273899734 - AluJ/FRAM SINE Alu -9 303 224 469 246 105 9 chr1 8293980 8294094 -273899570 + L2 LINE L2 3167 3291 -22 443 274 137 21 chr1 8294062 8294296 -273899368 - MIR SINE MIR 0 262 2 * 2298 106 0 0 chr1 8294961 8295263 -273898401 + AluSg SINE Alu 3 304 -6 375 23 0 0 chr1 8296222 8296266 -273897398 + (CA)n Simple_repeat Simple_repeat 2 45 0 231 335 66 36 chr1 8299134 8299301 -273894363 - MIR SINE MIR -54 208 37 292 320 0 0 chr1 8300108 8300183 -273893481 + L2 LINE L2 3004 3078 -194 2409 81 10 0 chr1 8300489 8300796 -273892868 + AluY SINE Alu 1 310 -1 698 176 50 0 chr1 8300827 8300946 -273892718 + FLAM_A SINE Alu 1 125 -8 1371 181 115 0 chr1 8302466 8302770 -273890894 + MER44D DNA MER2_type 1 609 0 1871 105 83 78 chr1 8302790 8302954 -273890710 + THE1B LTR MaLR 2 164 -200 1907 135 6 52 chr1 8302954 8303280 -273890384 - AluSx SINE Alu -1 311 1 1871 105 83 78 chr1 8303280 8303476 -273890188 + THE1B LTR MaLR 164 364 0 2505 61 0 26 chr1 8303560 8303873 -273889791 - AluY SINE Alu -5 306 2 818 128 14 43 chr1 8303931 8304072 -273889592 - FLAM_C SINE Alu -6 137 1 248 296 82 22 chr1 8304316 8304451 -273889213 - L1MC/D LINE L1 -1984 5824 5682 2324 80 10 0 chr1 8305169 8305469 -273888195 - AluY SINE Alu -8 303 1 2176 110 0 0 chr1 8305551 8305841 -273887823 + AluSx SINE Alu 23 312 0 23 54 0 0 chr1 8307429 8307466 -273886198 + AT_rich Low_complexity Low_complexity 1 37 0 22 56 0 0 chr1 8307935 8307971 -273885693 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr1 8308078 8308102 -273885562 + AT_rich Low_complexity Low_complexity 1 24 0 2216 111 0 0 chr1 8308106 8308425 -273885239 + AluSq SINE Alu 1 319 0 23 0 0 0 chr1 8308803 8308826 -273884838 + AT_rich Low_complexity Low_complexity 1 23 0 943 213 163 80 chr1 8309039 8309536 -273884128 + HAL1 LINE L1 1520 1974 -533 2206 107 0 0 chr1 8309536 8309826 -273883838 - AluSc SINE Alu -19 290 1 943 213 163 80 chr1 8309826 8309884 -273883780 + HAL1 LINE L1 1974 2026 -481 2296 74 3 0 chr1 8309884 8310168 -273883496 + AluSq SINE Alu 1 285 -28 943 213 163 80 chr1 8310168 8310249 -273883415 + HAL1 LINE L1 2026 2210 -297 1769 186 4 0 chr1 8310281 8310556 -273883108 + AluJb SINE Alu 6 281 -31 874 230 11 0 chr1 8310636 8310827 -273882837 + AluJb SINE Alu 118 310 -2 1660 176 22 45 chr1 8310835 8311148 -273882516 + AluJb SINE Alu 1 306 -6 262 294 39 0 chr1 8311149 8311251 -273882413 + HAL1 LINE L1 2319 2424 -83 696 279 104 5 chr1 8313345 8313567 -273880097 + MIR SINE MIR 7 250 -12 375 231 74 91 chr1 8314628 8314673 -273878991 - L2 LINE L2 0 3313 3269 1886 83 8 38 chr1 8314673 8314938 -273878726 + AluSc SINE Alu 37 293 -16 375 231 74 91 chr1 8314938 8315134 -273878530 - L2 LINE L2 -44 3269 3076 260 179 13 0 chr1 8315146 8315224 -273878440 + GA-rich Low_complexity Low_complexity 1 79 0 2145 117 7 0 chr1 8315428 8315718 -273877946 + AluSx SINE Alu 1 292 -20 2027 142 0 7 chr1 8315965 8316267 -273877397 - AluSx SINE Alu -11 301 2 414 209 35 52 chr1 8316560 8316675 -273876989 + Tigger1 DNA MER2_type 4 116 -2302 * 1022 92 32 38 chr1 8316667 8316852 -273876812 + LTR54 LTR ERV1 327 510 0 200 364 35 28 chr1 8316873 8317016 -273876648 + L2 LINE L2 2631 2774 -540 528 276 105 20 chr1 8317026 8317178 -273876486 - MIR SINE MIR -7 255 91 1691 155 6 75 chr1 8317195 8317556 -273876108 - MER2 DNA MER2_type -8 337 2 2091 92 56 0 chr1 8319219 8319503 -273874161 + AluSg SINE Alu 1 300 -10 2295 99 3 0 chr1 8319938 8320232 -273873432 + AluSq SINE Alu 1 295 -18 21 57 0 0 chr1 8320236 8320271 -273873393 + AT_rich Low_complexity Low_complexity 1 35 0 2430 81 10 10 chr1 8320797 8321107 -273872557 - AluSg SINE Alu 0 310 1 2051 134 3 0 chr1 8321460 8321759 -273871905 - AluSx SINE Alu -12 300 1 2072 105 4 0 chr1 8321820 8322096 -273871568 - AluSx SINE Alu -35 277 1 2286 97 3 0 chr1 8322138 8322446 -273871218 - AluSc SINE Alu 0 309 1 2014 88 11 18 chr1 8323539 8323812 -273869852 + AluSp SINE Alu 1 271 -42 2285 93 0 3 chr1 8324118 8324408 -273869256 - AluSg SINE Alu -21 289 1 604 186 7 57 chr1 8324408 8324548 -273869116 + MER58B DNA MER1_type 204 336 -5 242 264 97 0 chr1 8325139 8325211 -273868453 + MIR SINE MIR 38 116 -92 2368 101 0 0 chr1 8325220 8325528 -273868136 - AluSx SINE Alu -4 308 1 657 216 157 33 chr1 8325531 8325684 -273867980 - AluSg/x SINE Alu -19 293 122 341 219 0 14 chr1 8325714 8325787 -273867877 - MER5A DNA MER1_type -1 188 117 2692 235 50 44 chr1 8325799 8326660 -273867004 + L1MCb LINE L1 13 878 -5167 264 30 0 0 chr1 8326660 8326693 -273866971 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2257 92 3 3 chr1 8326695 8326988 -273866676 - AluY SINE Alu -18 293 1 2938 162 95 67 chr1 8326992 8327626 -273866038 + L1MC2 LINE L1 5595 6210 -134 195 100 0 0 chr1 8327626 8327656 -273866008 + (TG)n Simple_repeat Simple_repeat 1 30 0 2938 162 95 67 chr1 8327656 8327691 -273865973 + L1MC2 LINE L1 6210 6243 -101 2701 38 0 13 chr1 8327691 8328006 -273865658 - AluY SINE Alu 0 311 1 2938 162 95 67 chr1 8328006 8328052 -273865612 + L1MC2 LINE L1 6243 6331 -13 475 262 74 0 chr1 8328078 8328200 -273865464 - MER5A DNA MER1_type -58 131 1 1539 187 257 22 chr1 8328261 8328699 -273864965 + MLT1F LTR MaLR 1 502 -3 1878 93 43 25 chr1 8328714 8329019 -273864645 + AluSq SINE Alu 1 310 0 555 258 74 0 chr1 8329446 8329609 -273864055 + MIR SINE MIR 87 261 -1 188 337 171 21 chr1 8329611 8329804 -273863860 + L2 LINE L2 2838 3059 -213 23 0 0 0 chr1 8329842 8329865 -273863799 + AT_rich Low_complexity Low_complexity 1 23 0 271 270 0 60 chr1 8329893 8329993 -273863671 - MIR SINE MIR 0 262 169 22 0 0 0 chr1 8330185 8330207 -273863457 + AT_rich Low_complexity Low_complexity 1 22 0 513 265 129 34 chr1 8330239 8330463 -273863201 - L1MC4a LINE L1 -1791 6017 5757 2309 122 135 3 chr1 8330463 8330841 -273862823 + MSTA LTR MaLR 1 428 0 513 265 129 34 chr1 8330841 8330910 -273862754 - L1MC4a LINE L1 -2051 5757 5696 2344 70 0 3 chr1 8331074 8331392 -273862272 - AluY SINE Alu 0 317 1 207 0 0 0 chr1 8331738 8331761 -273861903 + (A)n Simple_repeat Simple_repeat 1 23 0 901 118 0 59 chr1 8332469 8332621 -273861043 - FLAM_C SINE Alu 0 143 1 830 120 0 0 chr1 8333156 8333281 -273860383 - AluSg/x SINE Alu 0 312 188 669 124 0 0 chr1 8333281 8333370 -273860294 - AluJ/FLAM SINE Alu -222 90 2 183 304 51 13 chr1 8333443 8333522 -273860142 + L2 LINE L2 3169 3250 -22 382 200 35 12 chr1 8333526 8333611 -273860053 - MIR SINE MIR -12 250 164 615 278 124 51 chr1 8333923 8334351 -273859313 - LTR41 LTR ERVL -6 767 309 980 166 29 6 chr1 8334388 8334563 -273859101 - LTR41 LTR ERVL -594 179 1 250 280 220 0 chr1 8334576 8334694 -273858970 + L2 LINE L2 2427 2570 -744 45 19 0 0 chr1 8334726 8334778 -273858886 + AT_rich Low_complexity Low_complexity 1 52 0 221 234 8 153 chr1 8334821 8334945 -273858719 + L2 LINE L2 2916 3021 -251 5011 151 61 15 chr1 8335063 8336110 -273857554 - Tigger3b DNA MER2_type -57 1175 3 263 271 59 93 chr1 8336144 8336262 -273857402 + L2 LINE L2 3154 3267 -5 2215 135 10 56 chr1 8336268 8336661 -273857003 + THE1C LTR MaLR 1 375 0 1718 119 0 140 chr1 8337436 8337772 -273855892 + AluJb SINE Alu 13 301 -11 1030 176 0 12 chr1 8337999 8338169 -273855495 + AluJo SINE Alu 1 168 -144 1621 134 94 29 chr1 8338171 8338446 -273855218 - AluSx SINE Alu -19 293 1 783 255 98 57 chr1 8338570 8338938 -273854726 + L2 LINE L2 2930 3312 -1 2119 169 42 0 chr1 8339943 8340303 -273853361 + THE1C LTR MaLR 1 375 0 1657 189 17 0 chr1 8340673 8340969 -273852695 + AluJo SINE Alu 1 301 -11 276 340 0 10 chr1 8341255 8341358 -273852306 + MLT1K LTR MaLR 185 286 -302 988 157 45 0 chr1 8341361 8341539 -273852125 - MER47A DNA MER2_type -177 189 4 189 194 75 32 chr1 8341622 8341715 -273851949 - L2 LINE L2 -358 2914 2818 349 143 13 13 chr1 8341733 8341810 -273851854 + GA-rich Low_complexity Low_complexity 1 77 0 2356 59 35 0 chr1 8341898 8342186 -273851478 - AluY SINE Alu -13 298 1 2158 100 0 21 chr1 8342672 8342963 -273850701 - AluSx SINE Alu -27 285 1 430 331 24 24 chr1 8342999 8343168 -273850496 - MIR SINE MIR -58 204 36 647 224 22 92 chr1 8343857 8344085 -273849579 - MIR SINE MIR 0 262 51 487 311 104 65 chr1 8344156 8344755 -273848909 - L2 LINE L2 0 3313 2667 2008 152 3 0 chr1 8344755 8345058 -273848606 + AluSx SINE Alu 1 304 -8 487 311 104 65 chr1 8345058 8345112 -273848552 - L2 LINE L2 -646 2667 2617 221 231 115 0 chr1 8345114 8345166 -273848498 + L2 LINE L2 3256 3313 0 281 282 13 0 chr1 8346162 8346240 -273847424 - MIR SINE MIR -21 241 163 544 197 249 28 chr1 8346867 8347080 -273846584 - MIR SINE MIR 0 262 3 21 0 0 0 chr1 8347894 8347915 -273845749 + AT_rich Low_complexity Low_complexity 1 21 0 493 196 181 7 chr1 8350318 8350456 -273843208 - MER69A DNA AcHobo -15 162 1 946 134 15 0 chr1 8350668 8350802 -273842862 + AluJo SINE Alu 1 136 -176 807 191 7 15 chr1 8350899 8351035 -273842629 + AluJo SINE Alu 1 135 -177 2219 113 10 3 chr1 8351695 8351997 -273841667 + AluSq SINE Alu 1 304 -9 2454 132 58 127 chr1 8352699 8352977 -273840687 + L1MA8 LINE L1 5711 6007 -284 1993 114 14 3 chr1 8352977 8353266 -273840398 - AluSg SINE Alu -18 292 1 1560 135 36 32 chr1 8353273 8353525 -273840139 - AluJo SINE Alu -11 301 49 2454 132 58 127 chr1 8353525 8353859 -273839805 + L1MA8 LINE L1 6013 6288 -3 692 154 9 0 chr1 8353908 8354018 -273839646 + FLAM_A SINE Alu 28 138 -4 351 0 0 0 chr1 8354724 8354763 -273838901 + (CA)n Simple_repeat Simple_repeat 2 40 0 2454 73 0 3 chr1 8354911 8355212 -273838452 - AluSq SINE Alu -13 300 1 259 167 0 0 chr1 8355503 8355551 -273838113 - Alu SINE Alu -4 298 251 696 332 23 0 chr1 8355740 8355996 -273837668 - MIR SINE MIR 0 262 1 2333 99 0 13 chr1 8356521 8356833 -273836831 + AluSp SINE Alu 1 308 -5 279 296 34 126 chr1 8356976 8357270 -273836394 + L2 LINE L2 3005 3271 -1 2033 138 0 7 chr1 8358236 8358541 -273835123 + AluSx SINE Alu 1 303 -9 2349 81 0 7 chr1 8358544 8358841 -273834823 + AluSc SINE Alu 1 295 -14 215 294 141 0 chr1 8359454 8359539 -273834125 - L2 LINE L2 -207 3065 2969 3947 181 48 19 chr1 8359606 8360412 -273833252 + L1MB8 LINE L1 5349 6178 0 2070 131 10 13 chr1 8360422 8360558 -273833106 + AluSq SINE Alu 1 136 -177 2321 89 0 0 chr1 8360558 8360849 -273832815 + AluSc SINE Alu 2 292 -17 2070 131 10 13 chr1 8360849 8361026 -273832638 + AluSq SINE Alu 136 313 0 2066 135 3 22 chr1 8361144 8361462 -273832202 + AluSx SINE Alu 1 312 0 186 243 103 96 chr1 8362019 8362155 -273831509 - L2 LINE L2 -1842 1472 1336 1745 183 10 16 chr1 8362206 8362518 -273831146 + AluJb SINE Alu 1 310 -2 23 0 0 0 chr1 8362562 8362585 -273831079 + AT_rich Low_complexity Low_complexity 1 23 0 2000 110 0 27 chr1 8362585 8362885 -273830779 + AluSx SINE Alu 21 312 0 1034 213 56 0 chr1 8363325 8363522 -273830142 + MER3 DNA MER1_type 2 209 0 782 211 60 22 chr1 8363830 8364015 -273829649 + MER58A DNA MER1_type 1 192 -32 1618 167 24 17 chr1 8364376 8364664 -273829000 - AluJo SINE Alu -22 290 1 2249 118 0 3 chr1 8364670 8364976 -273828688 - AluSx SINE Alu -7 305 1 28 0 0 0 chr1 8365187 8365215 -273828449 + AT_rich Low_complexity Low_complexity 1 28 0 271 275 296 16 chr1 8365352 8365541 -273828123 + MIR SINE MIR 12 253 -9 756 323 33 25 chr1 8365574 8365967 -273827697 + L1MC4a LINE L1 5548 5943 -1865 2125 111 10 7 chr1 8366128 8366425 -273827239 + AluSx SINE Alu 1 298 -14 2482 74 0 0 chr1 8366515 8366826 -273826838 + AluY SINE Alu 1 311 0 276 189 63 21 chr1 8366950 8367045 -273826619 + L1ME4a LINE L1 5916 6014 -107 211 222 0 0 chr1 8367046 8367082 -273826582 + L2 LINE L2 3199 3234 -79 2088 127 3 16 chr1 8367379 8367687 -273825977 + AluSx SINE Alu 1 304 -8 1923 157 13 3 chr1 8367693 8367993 -273825671 + AluSx SINE Alu 1 303 -9 799 176 23 0 chr1 8368299 8368430 -273825234 + AluJb SINE Alu 2 135 -177 2168 108 0 0 chr1 8368430 8368718 -273824946 + AluSg SINE Alu 1 288 -22 2414 72 3 3 chr1 8369234 8369540 -273824124 - AluSp SINE Alu -7 306 1 2615 65 7 0 chr1 8369838 8370145 -273823519 - AluSc SINE Alu 0 309 1 1583 192 0 38 chr1 8370176 8370489 -273823175 + AluJo SINE Alu 1 301 -11 914 266 5 5 chr1 8370674 8370881 -273822783 - MIR SINE MIR -54 208 2 1765 183 3 0 chr1 8371188 8371483 -273822181 - AluSx SINE Alu -16 296 1 1808 138 6 55 chr1 8371597 8371923 -273821741 - AluJb SINE Alu -2 310 1 2453 70 3 7 chr1 8372420 8372721 -273820943 - AluY SINE Alu -11 300 1 208 281 123 9 chr1 8372833 8372947 -273820717 + MIR SINE MIR 74 200 -62 1531 169 4 0 chr1 8373444 8373686 -273819978 + AluJb SINE Alu 4 246 -66 1353 139 15 0 chr1 8373739 8373940 -273819724 - AluSg/x SINE Alu -15 295 92 1219 246 91 9 chr1 8375449 8375846 -273817818 - MLT1K LTR MaLR -109 479 2 265 190 17 0 chr1 8375865 8375923 -273817741 + MIR SINE MIR 68 126 -82 1977 129 31 3 chr1 8376752 8377038 -273816626 + AluSx SINE Alu 1 294 -18 967 132 11 6 chr1 8377044 8377218 -273816446 + GA-rich Low_complexity Low_complexity 1 175 0 1133 211 62 62 chr1 8377493 8377559 -273816105 - MLT1C LTR MaLR -2 465 400 2175 122 0 3 chr1 8377559 8377870 -273815794 + AluSx SINE Alu 1 310 -2 1133 211 62 62 chr1 8377870 8378192 -273815472 - MLT1C LTR MaLR -66 401 77 2231 105 0 26 chr1 8378203 8378339 -273815325 + AluSx SINE Alu 1 139 -173 2150 105 7 16 chr1 8378339 8378643 -273815021 + AluSg SINE Alu 1 301 -9 2231 105 0 26 chr1 8378643 8378810 -273814854 + AluSx SINE Alu 139 296 -16 682 67 11 0 chr1 8378816 8378906 -273814758 + AluY SINE Alu 2 92 -219 1683 74 0 0 chr1 8378959 8379162 -273814502 + AluY SINE Alu 99 301 -10 1050 169 43 0 chr1 8379165 8379349 -273814315 - MLT1A1 LTR MaLR -4 361 170 1154 101 35 0 chr1 8379388 8379557 -273814107 - L1PA8 LINE L1 -3 6169 5995 829 114 8 38 chr1 8379557 8379688 -273813976 - FRAM SINE Alu -8 168 42 625 218 35 0 chr1 8379688 8379830 -273813834 - MLT1A1 LTR MaLR -218 147 1 1474 308 49 48 chr1 8379896 8380182 -273813482 - L2 LINE L2 -352 2962 2678 2220 102 7 3 chr1 8380182 8380476 -273813188 - AluSx SINE Alu -12 300 6 1474 308 49 48 chr1 8380476 8380842 -273812822 - L2 LINE L2 -636 2678 2306 2599 98 17 3 chr1 8380842 8381201 -273812463 - THE1B LTR MaLR 0 364 1 1474 308 49 48 chr1 8381201 8381423 -273812241 - L2 LINE L2 -1008 2306 2086 1757 120 71 0 chr1 8381469 8381736 -273811928 - AluSx SINE Alu -6 306 21 1628 163 0 80 chr1 8381741 8381928 -273811736 - AluJb SINE Alu -12 300 148 1906 135 10 10 chr1 8381928 8382216 -273811448 - AluSx SINE Alu -24 288 1 1628 163 0 80 chr1 8382216 8382354 -273811310 - AluJb SINE Alu -164 148 1 229 211 39 0 chr1 8382355 8382407 -273811257 - AluJo SINE Alu -167 135 82 2336 107 7 0 chr1 8384087 8384397 -273809267 - AluSx SINE Alu 0 312 1 2235 115 0 13 chr1 8385238 8385550 -273808114 + AluSq SINE Alu 1 308 -5 1632 149 7 53 chr1 8385573 8385719 -273807945 - AluJo SINE Alu -44 268 140 2315 97 7 0 chr1 8385719 8386017 -273807647 - AluSq SINE Alu -13 300 1 1632 149 7 53 chr1 8386017 8386151 -273807513 - AluJo SINE Alu -172 140 1 938 179 28 6 chr1 8386158 8386337 -273807327 + AluJb SINE Alu 112 294 -18 2024 93 11 7 chr1 8386340 8386619 -273807045 + AluSg SINE Alu 1 280 -30 1795 127 4 0 chr1 8386668 8386913 -273806751 + AluSx SINE Alu 1 246 -66 293 81 0 0 chr1 8387015 8387052 -273806612 - Alu SINE Alu -261 41 5 1147 45 0 8 chr1 8387157 8387290 -273806374 + AluSg SINE Alu 3 134 -176 2188 104 10 3 chr1 8387290 8387588 -273806076 + AluSx SINE Alu 1 300 -12 347 257 0 0 chr1 8387588 8387658 -273806006 + L2 LINE L2 3197 3266 -47 1186 139 17 6 chr1 8387821 8388001 -273805663 + AluSx SINE Alu 1 182 -130 300 297 27 18 chr1 8388031 8388142 -273805522 + MIR SINE MIR 27 138 -70 1670 156 31 59 chr1 8388849 8388985 -273804679 + AluJo SINE Alu 1 139 -173 2177 116 0 7 chr1 8388985 8389279 -273804385 + AluSc SINE Alu 1 292 -17 1670 156 31 59 chr1 8389279 8389462 -273804202 + AluJo SINE Alu 139 311 -1 551 286 82 11 chr1 8389464 8389646 -273804018 + MIR SINE MIR 57 251 -11 2170 245 75 51 chr1 8389921 8390533 -273803131 + L2 LINE L2 1732 2328 -986 2193 122 0 0 chr1 8390533 8390829 -273802835 + AluSx SINE Alu 1 296 -16 2170 245 75 51 chr1 8390829 8390961 -273802703 + L2 LINE L2 2328 2455 -859 1792 180 0 3 chr1 8390961 8391250 -273802414 + AluJb SINE Alu 1 288 -24 2170 245 75 51 chr1 8391250 8391462 -273802202 + L2 LINE L2 2455 2712 -602 512 174 51 0 chr1 8391465 8391563 -273802101 + AluJo SINE Alu 34 136 -176 340 152 76 13 chr1 8391584 8391663 -273802001 + L2 LINE L2 2702 2785 -529 1041 159 30 25 chr1 8391809 8392010 -273801654 + MLT1C LTR MaLR 266 467 0 998 272 72 59 chr1 8392010 8392466 -273801198 + L2 LINE L2 2848 3309 -4 2284 103 3 0 chr1 8393541 8393831 -273799833 - AluSq SINE Alu -22 291 1 213 298 46 23 chr1 8393896 8394027 -273799637 + L2 LINE L2 2537 2670 -644 798 276 95 21 chr1 8394866 8395277 -273798387 + L2 LINE L2 2664 3105 -208 2184 112 0 7 chr1 8395456 8395759 -273797905 + AluSx SINE Alu 1 301 -11 1572 118 0 0 chr1 8395808 8396019 -273797645 + AluJb SINE Alu 84 294 -18 24 53 0 0 chr1 8396199 8396237 -273797427 + AT_rich Low_complexity Low_complexity 1 38 0 2351 93 0 3 chr1 8396272 8396572 -273797092 - AluSg SINE Alu -11 299 1 885 126 0 15 chr1 8397072 8397207 -273796457 + AluJo SINE Alu 1 133 -169 38 0 0 0 chr1 8397207 8397245 -273796419 + AT_rich Low_complexity Low_complexity 1 38 0 1970 142 0 7 chr1 8398523 8398805 -273794859 - AluSq SINE Alu -33 280 1 293 326 68 30 chr1 8399280 8399412 -273794252 + L2 LINE L2 3133 3269 -3 968 169 34 11 chr1 8399859 8400037 -273793627 + AluJo SINE Alu 131 312 0 2497 87 0 0 chr1 8400794 8401105 -273792559 + AluSx SINE Alu 1 311 -1 1912 119 11 14 chr1 8401720 8401998 -273791666 + AluSx SINE Alu 19 295 -17 1864 56 158 11 chr1 8402035 8402301 -273791363 + AluY SINE Alu 1 305 -6 695 197 0 0 chr1 8402534 8402683 -273790981 + FLAM_C SINE Alu 1 149 0 253 220 17 34 chr1 8402685 8402744 -273790920 + FLAM_A SINE Alu 1 58 -75 997 201 0 16 chr1 8402766 8402950 -273790714 - AluJb SINE Alu -46 266 86 2182 94 7 0 chr1 8402966 8403243 -273790421 - AluSg SINE Alu -31 279 1 660 188 8 8 chr1 8403249 8403366 -273790298 - FLAM_A SINE Alu -10 132 16 2490 84 3 0 chr1 8403620 8403928 -273789736 + AluSp SINE Alu 1 309 -4 461 130 130 11 chr1 8404493 8404585 -273789079 - HY1 scRNA scRNA -2 110 8 1102 197 60 77 chr1 8405011 8405310 -273788354 + AluSx SINE Alu 2 295 -7 926 154 0 0 chr1 8405896 8406032 -273787632 + AluJo SINE Alu 1 136 -176 2135 111 0 19 chr1 8406032 8406348 -273787316 + AluSx SINE Alu 1 310 -2 2423 93 0 0 chr1 8406609 8406911 -273786753 - AluSx SINE Alu -10 302 1 2230 109 10 0 chr1 8406911 8407213 -273786451 - AluSq SINE Alu -8 305 1 32 0 0 0 chr1 8407440 8407472 -273786192 + AT_rich Low_complexity Low_complexity 1 32 0 1000 140 0 67 chr1 8407473 8407577 -273786087 + FRAM SINE Alu 1 83 -229 1455 58 85 58 chr1 8407577 8407715 -273785949 - MER30 DNA MER1_type 0 230 82 2297 104 0 19 chr1 8407715 8408033 -273785631 - AluSx SINE Alu 0 312 1 1455 58 85 58 chr1 8408033 8408118 -273785546 - MER30 DNA MER1_type -148 82 1 1000 140 0 67 chr1 8408118 8408192 -273785472 + FRAM SINE Alu 83 160 -16 270 173 49 25 chr1 8408207 8408288 -273785376 + L1MB7 LINE L1 6100 6182 -2 293 213 0 0 chr1 8408390 8408451 -273785213 + L1MC/D LINE L1 5376 5436 -2372 780 145 123 7 chr1 8408456 8408594 -273785070 + FRAM SINE Alu 1 154 -12 2110 118 7 0 chr1 8408603 8408890 -273784774 + AluSx SINE Alu 1 289 -23 2004 148 0 3 chr1 8408896 8409187 -273784477 + AluJb SINE Alu 1 290 -22 2372 94 3 0 chr1 8409190 8409487 -273784177 - AluSp SINE Alu -15 298 1 415 299 159 9 chr1 8409526 8409847 -273783817 + L1MC/D LINE L1 5443 5811 -1997 27 0 0 0 chr1 8409994 8410021 -273783643 + AT_rich Low_complexity Low_complexity 1 27 0 210 324 29 7 chr1 8410375 8410514 -273783150 + L2 LINE L2 2918 3059 -213 29 28 0 0 chr1 8410968 8411004 -273782660 + AT_rich Low_complexity Low_complexity 1 36 0 2191 97 27 10 chr1 8411113 8411411 -273782253 + AluSc SINE Alu 1 303 -6 1588 163 80 7 chr1 8411504 8411780 -273781884 - AluJb SINE Alu -16 296 1 1483 278 84 8 chr1 8412370 8412845 -273780819 + MLT1J LTR MaLR 1 511 0 1156 115 35 11 chr1 8412915 8413089 -273780575 - AluSg/x SINE Alu 0 310 133 1907 162 0 14 chr1 8413149 8413285 -273780379 + AluSq SINE Alu 1 137 -176 2089 135 3 3 chr1 8413285 8413596 -273780068 + AluSq SINE Alu 1 311 -2 1907 162 0 14 chr1 8413596 8413755 -273779909 + AluSq SINE Alu 137 292 -21 2352 110 3 0 chr1 8413760 8414069 -273779595 - AluSq SINE Alu -3 310 1 1741 124 51 7 chr1 8414165 8414459 -273779205 + AluSx SINE Alu 1 306 0 190 267 188 30 chr1 8414539 8414640 -273779024 - L2 LINE L2 0 3313 3197 1846 162 0 7 chr1 8414973 8415270 -273778394 - AluJo SINE Alu -17 295 1 975 168 0 23 chr1 8415914 8416087 -273777577 + AluJb SINE Alu 137 305 -7 864 209 37 37 chr1 8416361 8416576 -273777088 - MIR SINE MIR 0 262 48 2498 85 0 3 chr1 8416772 8417077 -273776587 + AluY SINE Alu 1 304 -7 432 229 100 53 chr1 8417459 8417629 -273776035 + MER104 DNA MER2_type 1 178 -2 2047 105 22 0 chr1 8417895 8418222 -273775442 - AluSx SINE Alu 0 333 1 42 0 0 19 chr1 8418227 8418248 -273775416 + AT_rich Low_complexity Low_complexity 1 21 -31 1896 167 0 3 chr1 8418248 8418535 -273775129 + AluJb SINE Alu 3 288 -24 42 0 0 19 chr1 8418535 8418566 -273775098 + AT_rich Low_complexity Low_complexity 21 52 0 200 200 25 0 chr1 8418813 8418853 -273774811 + (CAGG)n Simple_repeat Simple_repeat 3 43 0 1818 158 17 20 chr1 8419245 8419537 -273774127 + AluJo SINE Alu 1 291 -21 2168 123 4 0 chr1 8420286 8420587 -273773077 + AluSx SINE Alu 2 288 -24 2248 114 3 3 chr1 8421527 8421835 -273771829 - AluSx SINE Alu -4 308 1 327 85 0 0 chr1 8423750 8423797 -273769867 + (TG)n Simple_repeat Simple_repeat 2 48 0 23 92 0 0 chr1 8425150 8425215 -273768449 + GC_rich Low_complexity Low_complexity 1 65 0 273 57 0 0 chr1 8425734 8425769 -273767895 + (T)n Simple_repeat Simple_repeat 1 35 0 30 45 0 0 chr1 8425955 8425999 -273767665 + GC_rich Low_complexity Low_complexity 1 44 0 2549 60 3 0 chr1 8426813 8427111 -273766553 - AluSp SINE Alu -14 299 1 1772 119 0 0 chr1 8427466 8427701 -273765963 - AluSg/x SINE Alu 0 310 76 361 268 111 39 chr1 8428076 8428162 -273765502 - MIR SINE MIR -13 249 171 2465 84 10 0 chr1 8428162 8428472 -273765192 - AluSp SINE Alu 0 313 1 361 268 111 39 chr1 8428472 8428538 -273765126 - MIR SINE MIR -91 171 86 24 32 0 0 chr1 8428900 8428931 -273764733 + AT_rich Low_complexity Low_complexity 1 31 0 1435 166 4 17 chr1 8428932 8429167 -273764497 + AluJb SINE Alu 67 298 -14 381 332 65 18 chr1 8429184 8429401 -273764263 - L1M4 LINE L1 -905 5241 5015 23 33 0 0 chr1 8429522 8429552 -273764112 + AT_rich Low_complexity Low_complexity 1 30 0 2312 99 3 0 chr1 8430197 8430491 -273763173 + AluSq SINE Alu 1 295 -18 261 57 0 0 chr1 8431310 8431345 -273762319 + (A)n Simple_repeat Simple_repeat 1 35 0 2318 93 3 3 chr1 8431527 8431828 -273761836 + AluSx SINE Alu 1 301 -11 714 138 32 0 chr1 8431877 8432000 -273761664 + L1MC2 LINE L1 5727 5853 -480 803 154 0 0 chr1 8432001 8432124 -273761540 + AluJ SINE Alu 2 124 -188 25 0 0 0 chr1 8432135 8432160 -273761504 + AT_rich Low_complexity Low_complexity 1 25 0 1272 146 21 90 chr1 8432160 8432448 -273761216 + L1MC2 LINE L1 5839 6106 -238 1062 119 6 36 chr1 8432448 8432616 -273761048 + AluJ SINE Alu 132 294 -18 2095 118 17 3 chr1 8432616 8432903 -273760761 + AluSx SINE Alu 1 291 -21 2499 68 0 7 chr1 8432905 8433215 -273760449 + AluSg1 SINE Alu 1 308 -1 950 177 48 0 chr1 8433215 8433401 -273760263 + L1MC2 LINE L1 6137 6331 -13 2130 78 7 68 chr1 8433401 8433708 -273759956 + AluSq SINE Alu 1 288 -25 1111 169 62 71 chr1 8434344 8434479 -273759185 - MER44D DNA MER2_type -1886 605 470 2351 101 0 19 chr1 8434479 8434795 -273758869 + AluSg SINE Alu 1 310 0 1111 169 62 71 chr1 8434795 8434838 -273758826 - MER44D DNA MER2_type -2021 470 428 1929 160 0 3 chr1 8434838 8435131 -273758533 + AluJb SINE Alu 5 296 -16 1111 169 62 71 chr1 8435131 8435154 -273758510 - MER44D DNA MER2_type -2063 428 406 1750 144 26 49 chr1 8435154 8435297 -273758367 + AluJo SINE Alu 1 146 -166 1933 126 3 18 chr1 8435297 8435602 -273758062 + AluSx SINE Alu 1 301 0 1750 144 26 49 chr1 8435602 8435762 -273757902 + AluJo SINE Alu 146 298 -14 1111 169 62 71 chr1 8435762 8435896 -273757768 - MER44D DNA MER2_type -2085 406 1 1973 144 10 0 chr1 8435953 8436245 -273757419 + AluSx SINE Alu 16 310 -2 1141 162 6 6 chr1 8436245 8436424 -273757240 + AluJb SINE Alu 134 312 0 2203 100 7 20 chr1 8436593 8436894 -273756770 + AluSx SINE Alu 1 297 -15 2365 66 0 3 chr1 8437003 8437290 -273756374 + AluY SINE Alu 18 303 -8 2411 281 39 37 chr1 8437437 8438121 -273755543 + L2 LINE L2 989 1677 -1637 2382 111 0 0 chr1 8438121 8438428 -273755236 + AluSq SINE Alu 1 307 -6 2411 281 39 37 chr1 8438428 8438644 -273755020 + L2 LINE L2 1677 1891 -1423 2039 100 28 21 chr1 8438654 8438945 -273754719 + AluSx SINE Alu 10 302 -10 816 144 16 124 chr1 8439356 8439507 -273754157 + L1MCa LINE L1 352 479 -5947 2254 111 3 0 chr1 8439507 8439804 -273753860 - AluSp SINE Alu -15 298 1 816 144 16 124 chr1 8439804 8439846 -273753818 + L1MCa LINE L1 479 524 -5902 620 158 61 0 chr1 8439846 8439960 -273753704 + MER7A DNA MER2_type 1 119 -227 876 184 6 28 chr1 8439962 8440141 -273753523 + AluJb SINE Alu 137 311 -1 1401 209 43 7 chr1 8440184 8440461 -273753203 + AluJb SINE Alu 17 303 -9 226 214 18 0 chr1 8440461 8440517 -273753147 + L1MCa LINE L1 1779 1835 -4591 2351 113 3 0 chr1 8440519 8440828 -273752836 - AluSx SINE Alu -2 310 1 198 0 0 0 chr1 8440834 8440856 -273752808 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 1545 197 0 35 chr1 8440857 8441174 -273752490 + AluJb SINE Alu 3 309 0 2012 152 3 3 chr1 8441175 8441485 -273752179 + AluSx SINE Alu 2 311 -1 484 135 10 0 chr1 8441485 8441589 -273752075 + L1MCa LINE L1 1821 1925 -4501 2376 80 0 20 chr1 8441711 8442012 -273751652 + AluY SINE Alu 1 295 -16 2111 109 56 0 chr1 8442142 8442427 -273751237 - AluSx SINE Alu -11 301 1 2276 95 7 0 chr1 8442459 8442754 -273750910 - AluSg SINE Alu -13 297 1 929 186 6 6 chr1 8442754 8442921 -273750743 - AluJb SINE Alu -15 297 131 1269 127 184 0 chr1 8443357 8443636 -273750028 - pTR5 LTR ERV1 -571 1692 57 17785 75 5 7 chr1 8443644 8446075 -273747589 - HERV9 LTR ERV1 0 8399 5972 2058 117 37 7 chr1 8446159 8446458 -273747206 - AluSc SINE Alu -1 308 1 976 87 0 8 chr1 8446485 8446612 -273747052 - AluSp/q SINE Alu -18 295 170 21 36 0 0 chr1 8446634 8446662 -273747002 + AT_rich Low_complexity Low_complexity 1 28 0 598 135 0 0 chr1 8446842 8446931 -273746733 - LTR8 LTR ERV1 0 691 603 2085 143 7 0 chr1 8446931 8447231 -273746433 + AluSx SINE Alu 1 302 -10 206 170 0 21 chr1 8447234 8447281 -273746383 + A-rich Low_complexity Low_complexity 3 48 0 296 161 0 0 chr1 8447285 8447341 -273746323 - LTR8 LTR ERV1 -73 618 563 3549 102 33 38 chr1 8448545 8448599 -273745065 - LTR8 LTR ERV1 -113 578 525 2204 88 29 39 chr1 8448599 8448791 -273744873 - AluSg SINE Alu -5 305 116 2534 43 33 0 chr1 8448791 8449092 -273744572 - AluY SINE Alu 0 311 1 2204 88 29 39 chr1 8449092 8449207 -273744457 - AluSg SINE Alu -194 116 1 3549 102 33 38 chr1 8449207 8449733 -273743931 - LTR8 LTR ERV1 -166 525 1 581 251 70 32 chr1 8449736 8449923 -273743741 + L2 LINE L2 3120 3313 0 226 227 196 0 chr1 8450081 8450178 -273743486 - MER34 LTR ERV1 -57 485 370 827 213 34 78 chr1 8450278 8450546 -273743118 + LTR8 LTR ERV1 1 256 -435 2501 60 7 3 chr1 8450580 8450878 -273742786 + AluSp SINE Alu 1 299 -14 1011 187 0 21 chr1 8450888 8451075 -273742589 - AluJb SINE Alu -15 297 115 2388 92 0 7 chr1 8451076 8451381 -273742283 + AluY SINE Alu 1 303 -8 1527 83 5 0 chr1 8451386 8451590 -273742074 - MER51B LTR ERV1 -125 252 48 180 0 0 0 chr1 8451600 8451620 -273742044 + (T)n Simple_repeat Simple_repeat 1 20 0 246 49 0 0 chr1 8451620 8451661 -273742003 + Alu SINE Alu 260 300 0 212 143 24 0 chr1 8452091 8452133 -273741531 + (TA)n Simple_repeat Simple_repeat 1 43 0 215 61 30 0 chr1 8452133 8452166 -273741498 + (TG)n Simple_repeat Simple_repeat 2 35 0 354 288 34 14 chr1 8452302 8452448 -273741216 - L3 LINE CR1 -199 1378 1230 1690 191 10 16 chr1 8452580 8452884 -273740780 - AluJb SINE Alu -6 306 5 2580 62 7 0 chr1 8452922 8453230 -273740434 - AluY SINE Alu -1 310 1 2442 68 14 0 chr1 8453232 8453525 -273740139 - AluSq SINE Alu -16 297 1 1744 183 3 3 chr1 8453528 8453823 -273739841 - AluJo SINE Alu -17 295 1 368 248 21 78 chr1 8453827 8453951 -273739713 + L2 LINE L2 2513 2642 -672 1764 172 14 7 chr1 8453951 8454242 -273739422 + AluJo SINE Alu 1 293 -19 2233 130 0 0 chr1 8454242 8454550 -273739114 + AluSg SINE Alu 1 308 -2 368 248 21 78 chr1 8454550 8454565 -273739099 + L2 LINE L2 2640 2645 -669 622 246 0 0 chr1 8454807 8454941 -273738723 - MER58A DNA MER1_type -4 220 87 1234 148 9 32 chr1 8454941 8455157 -273738507 + AluJb SINE Alu 87 297 -15 357 205 141 0 chr1 8455157 8455235 -273738429 - MER58A DNA MER1_type -18 89 1 1052 220 81 23 chr1 8455362 8455621 -273738043 - MLT1A1 LTR MaLR -16 349 76 2070 133 10 10 chr1 8455621 8455923 -273737741 - AluSx SINE Alu -10 302 1 308 302 64 87 chr1 8455960 8456132 -273737532 - L3 LINE CR1 -1012 565 398 2168 104 10 0 chr1 8456262 8456550 -273737114 - AluSq SINE Alu -22 291 1 180 316 89 13 chr1 8457030 8457109 -273736555 + MIR SINE MIR 163 247 -15 2187 124 3 7 chr1 8457111 8457418 -273736246 - AluSx SINE Alu -6 306 1 2216 122 0 13 chr1 8458260 8458572 -273735092 + AluSq SINE Alu 1 308 -5 1639 161 7 52 chr1 8458590 8458741 -273734923 - AluJo SINE Alu -39 273 140 2367 97 3 0 chr1 8458741 8459040 -273734624 - AluSq SINE Alu -13 300 1 1639 161 7 52 chr1 8459040 8459174 -273734490 - AluJo SINE Alu -172 140 1 186 43 0 0 chr1 8459327 8459350 -273734314 + (TCTCCC)n Simple_repeat Simple_repeat 1 23 0 8868 49 140 14 chr1 8459352 8460536 -273733128 + SVA Other Other 53 1385 -1 380 92 184 0 chr1 8460537 8460613 -273733051 + MER41A LTR ERV1 383 472 -82 186 43 0 0 chr1 8460614 8460637 -273733027 + (A)n Simple_repeat Simple_repeat 1 23 0 2034 122 0 69 chr1 8460756 8461091 -273732573 - AluSx SINE Alu 0 312 1 213 146 0 0 chr1 8461117 8461165 -273732499 + (TG)n Simple_repeat Simple_repeat 1 48 0 686 132 15 73 chr1 8461165 8461301 -273732363 - FRAM SINE Alu -9 167 40 2543 75 0 0 chr1 8461840 8462148 -273731516 - AluSx SINE Alu -4 308 1 1925 139 20 3 chr1 8462623 8462918 -273730746 + AluSx SINE Alu 1 300 -12 2770 167 12 37 chr1 8463603 8464173 -273729491 + L1MB5 LINE L1 5584 6139 -35 2308 89 10 7 chr1 8464180 8464473 -273729191 + AluSq SINE Alu 6 299 -14 2122 118 7 3 chr1 8464486 8464791 -273728873 + AluJb SINE Alu 7 312 0 2281 104 3 0 chr1 8464795 8465094 -273728570 + AluSg SINE Alu 3 302 -8 883 137 0 0 chr1 8465094 8465218 -273728446 + FLAM_C SINE Alu 12 135 -8 1104 89 0 0 chr1 8465539 8465674 -273727990 + AluSq/x SINE Alu 1 135 -178 2323 112 0 13 chr1 8465674 8465988 -273727676 + AluSx SINE Alu 1 310 -2 1013 208 19 102 chr1 8466291 8466613 -273727051 + AluJo SINE Alu 1 295 -7 2313 100 7 0 chr1 8466712 8467012 -273726652 + AluSx SINE Alu 11 312 0 1667 163 0 80 chr1 8468745 8468883 -273724781 + AluJb SINE Alu 1 148 -164 1921 135 10 10 chr1 8468883 8469171 -273724493 + AluSx SINE Alu 1 288 -24 1667 163 0 80 chr1 8469171 8469358 -273724306 + AluJb SINE Alu 148 300 -12 1784 120 71 0 chr1 8469363 8469630 -273724034 + AluSx SINE Alu 21 306 -6 1461 313 66 28 chr1 8469676 8469898 -273723766 + L2 LINE L2 2086 2298 -1016 2630 98 17 3 chr1 8469898 8470257 -273723407 + THE1B LTR MaLR 1 364 0 1461 313 66 28 chr1 8470257 8470623 -273723041 + L2 LINE L2 2298 2688 -626 2268 106 7 0 chr1 8470623 8470916 -273722748 + AluSx SINE Alu 6 300 -12 1461 313 66 28 chr1 8470916 8471202 -273722462 + L2 LINE L2 2688 2962 -352 651 217 28 0 chr1 8471268 8471411 -273722253 + MLT1A1 LTR MaLR 1 147 -218 870 111 0 62 chr1 8471411 8471543 -273722121 + FRAM SINE Alu 1 30 -146 1036 118 35 0 chr1 8471543 8471712 -273721952 + L1PA8 LINE L1 5995 6169 -3 870 111 0 62 chr1 8471712 8471723 -273721941 + FRAM SINE Alu 30 40 0 998 169 43 0 chr1 8471751 8471935 -273721729 + MLT1A1 LTR MaLR 170 361 -4 1698 74 0 0 chr1 8471938 8472141 -273721523 - AluY SINE Alu -10 301 99 803 54 0 0 chr1 8472194 8472286 -273721378 - AluY SINE Alu -219 92 1 2268 106 0 17 chr1 8472291 8472455 -273721209 - AluSx SINE Alu -16 296 138 2186 108 7 16 chr1 8472455 8472762 -273720902 - AluSg SINE Alu -6 304 1 2268 106 0 17 chr1 8472762 8472898 -273720766 - AluSx SINE Alu -174 138 1 1095 221 57 57 chr1 8472909 8473231 -273720433 + MLT1C LTR MaLR 77 401 -66 2219 122 0 3 chr1 8473231 8473542 -273720122 - AluSx SINE Alu -2 310 1 1095 221 57 57 chr1 8473542 8473608 -273720056 + MLT1C LTR MaLR 400 465 -2 949 127 12 6 chr1 8473883 8474049 -273719615 + CT-rich Low_complexity Low_complexity 1 167 0 1999 132 31 3 chr1 8474064 8474351 -273719313 - AluSx SINE Alu -17 295 1 278 190 17 0 chr1 8475180 8475238 -273718426 - MIR SINE MIR -137 125 67 1187 246 91 9 chr1 8475257 8475654 -273718010 + MLT1K LTR MaLR 2 479 -109 2055 119 39 0 chr1 8476594 8476757 -273716907 - AluSx SINE Alu -16 296 141 2165 120 3 10 chr1 8476757 8477056 -273716608 - AluSq SINE Alu -16 297 1 180 0 0 0 chr1 8477062 8477082 -273716582 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2055 119 39 0 chr1 8477082 8477196 -273716468 - AluSx SINE Alu -175 137 1 195 42 0 0 chr1 8477547 8477571 -273716093 + (GCTG)n Simple_repeat Simple_repeat 2 25 0 2387 110 0 0 chr1 8478321 8478631 -273715033 + AluSx SINE Alu 1 310 -2 261 0 0 0 chr1 8479098 8479127 -273714537 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 2208 110 0 35 chr1 8479581 8479898 -273713766 - AluSx SINE Alu -6 306 1 1351 186 121 53 chr1 8479953 8480238 -273713426 + L1M4 LINE L1 4873 5198 -948 1962 155 3 19 chr1 8480238 8480555 -273713109 + AluJo SINE Alu 1 312 0 1351 186 121 53 chr1 8480555 8480699 -273712965 + L1M4 LINE L1 5198 5331 -815 2339 105 0 3 chr1 8480699 8481003 -273712661 + AluSx SINE Alu 1 303 -9 1360 131 80 55 chr1 8481008 8481245 -273712419 + AluJo SINE Alu 55 297 -15 1959 173 20 32 chr1 8481247 8481283 -273712381 + L1M4 LINE L1 5333 5368 -816 1770 163 51 10 chr1 8481283 8481577 -273712087 + AluJb SINE Alu 1 306 -6 1959 173 20 32 chr1 8481577 8481696 -273711968 + L1M4 LINE L1 5368 5487 -697 2447 89 0 0 chr1 8481696 8481999 -273711665 + AluSx SINE Alu 1 303 -9 1959 173 20 32 chr1 8481999 8482281 -273711383 + L1M4 LINE L1 5487 5766 -418 920 140 15 0 chr1 8482288 8482424 -273711240 + FRAM SINE Alu 18 155 -21 333 47 0 0 chr1 8482444 8482487 -273711177 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 941 158 35 12 chr1 8482509 8482680 -273710984 - FRAM SINE Alu -1 175 1 441 268 116 0 chr1 8482802 8482966 -273710698 - L2 LINE L2 -26 3287 3105 2123 65 46 55 chr1 8483215 8483522 -273710142 + AluY SINE Alu 1 304 -7 1067 201 27 5 chr1 8483522 8483746 -273709918 + L1M3 LINE L1 5441 5669 -511 383 111 10 4 chr1 8483746 8483954 -273709710 + AluJo SINE Alu 1 296 -4 280 206 118 81 chr1 8484722 8484788 -273708876 - Charlie8 DNA MER1_type -2219 198 136 1399 175 68 51 chr1 8484788 8484931 -273708733 + AluJo SINE Alu 1 140 -172 2211 98 0 7 chr1 8484931 8485243 -273708421 + AluSg SINE Alu 1 310 0 1399 175 68 51 chr1 8485243 8485390 -273708274 + AluJo SINE Alu 140 297 -15 280 206 118 81 chr1 8485390 8485459 -273708205 - Charlie8 DNA MER1_type -2281 136 58 323 275 158 35 chr1 8485471 8485584 -273708080 + L1ME1 LINE L1 5970 6112 -54 2156 118 5 68 chr1 8485584 8485760 -273707904 + THE1C LTR MaLR 1 186 -189 2375 93 0 10 chr1 8485760 8486073 -273707591 - AluSx SINE Alu -1 311 2 2156 118 5 68 chr1 8486073 8486296 -273707368 + THE1C LTR MaLR 186 375 0 323 275 158 35 chr1 8486296 8486353 -273707311 + L1ME1 LINE L1 6112 6161 -5 2070 124 0 0 chr1 8486436 8486709 -273706955 - AluSx SINE Alu -19 293 21 205 279 13 63 chr1 8486871 8486950 -273706714 - MIR SINE MIR -108 154 80 723 188 85 6 chr1 8487290 8487455 -273706209 - MER5B DNA MER1_type 0 178 1 722 160 128 19 chr1 8487475 8487631 -273706033 - AluJo SINE Alu -20 292 120 2135 131 0 0 chr1 8487637 8487927 -273705737 + AluSx SINE Alu 1 290 -22 606 221 14 0 chr1 8488509 8488649 -273705015 + ERVL-C1 LTR ERVL 5615 5756 -8 516 208 95 135 chr1 8488651 8488817 -273704847 + MLT2C1 LTR ERVL 3 151 -246 2045 133 14 7 chr1 8488817 8489111 -273704553 - AluSx SINE Alu -16 296 1 516 208 95 135 chr1 8489111 8489271 -273704393 + MLT2C1 LTR ERVL 151 316 -81 853 206 13 0 chr1 8489286 8489441 -273704223 - AluJb SINE Alu -26 286 130 2061 128 7 14 chr1 8489626 8489796 -273703868 - AluSx SINE Alu -7 305 136 2397 95 0 0 chr1 8489796 8490092 -273703572 - AluSg SINE Alu -14 296 1 2061 128 7 14 chr1 8490092 8490217 -273703447 - AluSx SINE Alu -176 136 12 189 0 0 0 chr1 8491796 8491817 -273701847 + (A)n Simple_repeat Simple_repeat 1 21 0 1626 114 63 20 chr1 8491825 8492080 -273701584 + AluSx SINE Alu 35 300 -12 600 135 0 0 chr1 8492101 8492197 -273701467 + FRAM SINE Alu 73 168 -8 619 116 0 0 chr1 8493551 8493637 -273700027 - FLAM_C SINE Alu -37 106 21 1452 194 11 29 chr1 8494243 8494521 -273699143 - AluJo SINE Alu -39 273 1 463 271 97 7 chr1 8494670 8494814 -273698850 + MIR SINE MIR 7 163 -99 844 80 36 0 chr1 8495908 8496020 -273697644 + AluSg/x SINE Alu 195 310 -2 677 164 0 62 chr1 8496592 8496720 -273696944 - FLAM_A SINE Alu -12 121 2 354 235 44 88 chr1 8496785 8496921 -273696743 - MIR SINE MIR -71 191 62 1979 94 94 4 chr1 8497468 8497745 -273695919 - AluY SINE Alu -9 302 1 332 256 231 20 chr1 8498388 8498587 -273695077 - MARNA DNA Mariner -184 402 162 1603 167 42 48 chr1 8498592 8498903 -273694761 - AluJb SINE Alu -3 309 1 2271 123 0 0 chr1 8499474 8499775 -273693889 - AluSx SINE Alu -11 301 1 185 138 0 0 chr1 8502153 8502182 -273691482 - MER5A DNA MER1_type -33 156 128 230 254 0 0 chr1 8502243 8502302 -273691362 - Charlie5 DNA MER1_type -27 2585 2527 2187 119 3 0 chr1 8502303 8502596 -273691068 - AluSx SINE Alu -16 296 3 657 186 120 42 chr1 8503080 8503247 -273690417 + L1MC1 LINE L1 6137 6316 -17 2312 109 0 16 chr1 8504209 8504522 -273689142 + AluSx SINE Alu 4 311 -1 749 96 88 0 chr1 8505057 8505182 -273688482 - MER85 DNA T2_type -3 136 1 189 171 0 0 chr1 8505213 8505248 -273688416 + A-rich Low_complexity Low_complexity 1 35 0 703 114 0 61 chr1 8505704 8505836 -273687828 - FLAM_C SINE Alu -9 124 1 273 177 89 25 chr1 8506349 8506428 -273687236 - L1ME1 LINE L1 -117 6049 5966 1000 50 10 5 chr1 8506532 8506732 -273686932 + AluY SINE Alu 2 302 -9 1967 87 66 35 chr1 8506760 8506908 -273686756 - AluSq SINE Alu -13 300 158 1876 85 143 0 chr1 8506908 8507167 -273686497 - AluY SINE Alu -15 296 1 1967 87 66 35 chr1 8507167 8507307 -273686357 - AluSq SINE Alu -155 158 3 2156 60 19 82 chr1 8507681 8507999 -273685665 + AluSp SINE Alu 1 298 -15 2471 81 0 3 chr1 8511209 8511519 -273682145 + AluSg SINE Alu 2 310 0 1362 182 34 51 chr1 8511541 8511837 -273681827 + AluJo SINE Alu 3 293 -19 2142 108 29 32 chr1 8511840 8512154 -273681510 + AluSq SINE Alu 1 313 0 2322 110 3 0 chr1 8512164 8512465 -273681199 + AluSx SINE Alu 1 302 -10 2457 92 3 0 chr1 8512558 8512864 -273680800 - AluY SINE Alu -4 307 1 2196 112 0 16 chr1 8512887 8513190 -273680474 - AluSg SINE Alu -12 298 1 201 39 0 0 chr1 8513190 8513216 -273680448 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 2008 128 0 3 chr1 8513216 8513498 -273680166 - AluSg SINE Alu -29 281 1 33 0 0 0 chr1 8513499 8513532 -273680132 + AT_rich Low_complexity Low_complexity 1 33 0 546 144 0 52 chr1 8513532 8513629 -273680035 - U6 snRNA snRNA -2 105 14 2374 90 3 0 chr1 8514082 8514382 -273679282 - AluSp SINE Alu -12 301 1 2238 117 3 7 chr1 8514639 8514946 -273678718 + AluSx SINE Alu 1 306 -6 2183 104 10 0 chr1 8515507 8515795 -273677869 + AluSq SINE Alu 1 291 -22 274 319 59 89 chr1 8515928 8516097 -273677567 + L3 LINE CR1 402 565 -1012 2083 133 10 10 chr1 8516134 8516436 -273677228 + AluSx SINE Alu 1 302 -10 1087 220 81 23 chr1 8516436 8516695 -273676969 + MLT1A1 LTR MaLR 76 349 -16 366 205 141 0 chr1 8516822 8516900 -273676764 + MER58A DNA MER1_type 1 89 -18 1240 148 9 32 chr1 8516900 8517116 -273676548 - AluJb SINE Alu -15 297 87 639 246 0 0 chr1 8517116 8517250 -273676414 + MER58A DNA MER1_type 87 220 -4 2239 130 0 0 chr1 8517507 8517815 -273675849 - AluSg SINE Alu -2 308 1 1768 172 14 7 chr1 8517815 8518106 -273675558 - AluJo SINE Alu -19 293 1 346 233 25 50 chr1 8518110 8518230 -273675434 - L2 LINE L2 -685 2629 2513 1758 183 3 3 chr1 8518234 8518529 -273675135 + AluJo SINE Alu 1 295 -17 2454 68 14 0 chr1 8518532 8518825 -273674839 + AluSq SINE Alu 1 297 -16 2593 62 7 0 chr1 8518827 8519135 -273674529 + AluY SINE Alu 1 310 -1 1696 191 10 16 chr1 8519173 8519477 -273674187 + AluJb SINE Alu 5 306 -6 354 294 34 14 chr1 8519609 8519755 -273673909 + L3 LINE CR1 1230 1378 -199 215 61 30 0 chr1 8519891 8519924 -273673740 + (CA)n Simple_repeat Simple_repeat 2 35 0 212 143 24 0 chr1 8519924 8519966 -273673698 + (TA)n Simple_repeat Simple_repeat 2 44 0 246 49 0 0 chr1 8520396 8520437 -273673227 - Alu SINE Alu 0 300 260 180 0 0 0 chr1 8520437 8520457 -273673207 + (A)n Simple_repeat Simple_repeat 1 20 0 1513 88 5 0 chr1 8520467 8520671 -273672993 + MER51B LTR ERV1 48 252 -125 2388 92 0 7 chr1 8520676 8520981 -273672683 - AluY SINE Alu -8 303 1 1011 187 0 21 chr1 8520982 8521169 -273672495 + AluJb SINE Alu 115 297 -15 2501 60 7 3 chr1 8521179 8521477 -273672187 - AluSp SINE Alu -14 299 1 827 213 34 78 chr1 8521511 8521779 -273671885 - LTR8 LTR ERV1 -435 256 1 226 227 196 0 chr1 8521879 8521976 -273671688 + MER34 LTR ERV1 370 485 -57 581 251 70 32 chr1 8522134 8522321 -273671343 - L2 LINE L2 0 3313 3120 3549 102 33 38 chr1 8522324 8522850 -273670814 + LTR8 LTR ERV1 1 525 -166 2204 88 29 39 chr1 8522850 8522965 -273670699 + AluSg SINE Alu 1 116 -194 2534 43 33 0 chr1 8522965 8523266 -273670398 + AluY SINE Alu 1 311 0 2204 88 29 39 chr1 8523266 8523458 -273670206 + AluSg SINE Alu 116 305 -5 3549 102 33 38 chr1 8523458 8523512 -273670152 + LTR8 LTR ERV1 525 578 -113 311 143 0 0 chr1 8524714 8524770 -273668894 + LTR8 LTR ERV1 563 618 -73 206 170 0 21 chr1 8524774 8524821 -273668843 + T-rich Low_complexity Low_complexity 3 48 0 2085 143 7 0 chr1 8524824 8525124 -273668540 - AluSx SINE Alu -10 302 1 598 135 0 0 chr1 8525124 8525213 -273668451 + LTR8 LTR ERV1 603 691 0 21 36 0 0 chr1 8525393 8525421 -273668243 + AT_rich Low_complexity Low_complexity 1 28 0 976 87 0 8 chr1 8525443 8525570 -273668094 + AluSp/q SINE Alu 170 295 -18 2058 117 37 7 chr1 8525597 8525896 -273667768 + AluSc SINE Alu 1 308 -1 17779 75 5 7 chr1 8525980 8528411 -273665253 + HERV9 LTR ERV1 5972 8399 0 6166 66 45 21 chr1 8528411 8529218 -273664446 + LTR12 LTR ERV1 1 826 0 1486 129 160 4 chr1 8529221 8529477 -273664187 - AluJo SINE Alu -16 296 1 2145 136 3 0 chr1 8529508 8529816 -273663848 - AluSq SINE Alu -4 309 1 2081 119 0 20 chr1 8529819 8530122 -273663542 - AluSx SINE Alu -15 297 1 501 125 25 0 chr1 8530188 8530268 -273663396 - MER41B LTR ERV1 -221 414 333 1812 146 36 4 chr1 8530270 8530545 -273663119 + AluSx SINE Alu 1 284 -28 183 42 0 0 chr1 8530545 8530569 -273663095 + (CTAAA)n Simple_repeat Simple_repeat 2 25 0 1278 154 0 43 chr1 8530581 8530752 -273662912 - MER41B LTR ERV1 -282 353 193 2260 105 7 0 chr1 8530752 8531046 -273662618 - AluSg SINE Alu -14 296 1 1278 154 0 43 chr1 8531046 8531108 -273662556 - MER41B LTR ERV1 -442 193 130 2121 129 0 41 chr1 8531135 8531307 -273662357 - AluSx SINE Alu -8 304 126 576 0 0 0 chr1 8531307 8531371 -273662293 + (TTTTA)n Simple_repeat Simple_repeat 2 65 0 2053 145 3 0 chr1 8531371 8531654 -273662010 - AluSq SINE Alu -29 284 1 2121 129 0 41 chr1 8531654 8531797 -273661867 - AluSx SINE Alu -184 128 1 1348 148 145 17 chr1 8531817 8532107 -273661557 + LTR47A LTR ERVL 124 450 -2 2301 105 0 0 chr1 8532123 8532419 -273661245 - AluSx SINE Alu -16 296 1 876 184 180 39 chr1 8532555 8532811 -273660853 + MER21A LTR ERV1 1 292 -639 * 1224 107 32 0 chr1 8532791 8532978 -273660686 - MER30 DNA MER1_type -37 193 1 * 3133 159 87 29 chr1 8532978 8533344 -273660320 + MER21A LTR ERV1 245 588 -343 2242 93 0 0 chr1 8533344 8533624 -273660040 + AluSx SINE Alu 1 280 -32 224 77 26 0 chr1 8533626 8533665 -273659999 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 3133 159 87 29 chr1 8533665 8533936 -273659728 + MER21A LTR ERV1 588 922 -9 294 95 0 0 chr1 8534488 8534530 -273659134 + (TCTCC)n Simple_repeat Simple_repeat 4 45 0 1632 161 0 16 chr1 8534530 8534779 -273658885 - AluJb SINE Alu -33 279 35 351 273 104 44 chr1 8534912 8535095 -273658569 + L1MEd LINE L1 619 812 -5307 222 62 0 0 chr1 8535095 8535127 -273658537 + (TTAA)n Simple_repeat Simple_repeat 2 33 0 1945 108 71 0 chr1 8535127 8535395 -273658269 - AluSx SINE Alu -25 287 1 183 129 0 0 chr1 8535440 8535471 -273658193 + (TC)n Simple_repeat Simple_repeat 2 32 0 2296 121 0 3 chr1 8535473 8535786 -273657878 - AluSx SINE Alu 0 312 1 314 339 99 0 chr1 8536149 8536341 -273657323 + L1MEd LINE L1 617 827 -5292 2363 122 0 0 chr1 8536375 8536687 -273656977 - AluSx SINE Alu 0 312 1 2673 40 0 3 chr1 8536691 8536995 -273656669 - AluYa5 SINE Alu -7 304 2 2810 22 0 10 chr1 8536998 8537312 -273656352 - AluYa5 SINE Alu 0 311 1 924 145 0 0 chr1 8537315 8537446 -273656218 - AluJo/FLAM SINE Alu -181 131 1 1254 86 0 32 chr1 8537912 8538098 -273655566 - HERVK9 LTR ERVK -4111 1805 1626 * 4176 89 63 17 chr1 8538094 8538732 -273654932 - HERVK9 LTR ERVK -5249 667 1 1353 148 76 8 chr1 8538732 8538982 -273654682 - MER9 LTR ERVK 0 511 245 519 202 0 0 chr1 8539005 8539089 -273654575 - AluJ/FLAM SINE Alu -224 88 5 306 325 57 57 chr1 8539110 8539334 -273654330 + LTR16A LTR ERVL 145 368 -82 835 143 8 0 chr1 8539334 8539460 -273654204 - L1PB2 LINE L1 -3 6148 6022 306 325 57 57 chr1 8539460 8539473 -273654191 + LTR16A LTR ERVL 368 380 -70 2375 71 0 0 chr1 8539473 8539782 -273653882 - AluSc SINE Alu 0 309 1 306 325 57 57 chr1 8539782 8539840 -273653824 + LTR16A LTR ERVL 379 442 -8 388 303 0 0 chr1 8540027 8540136 -273653528 - L2 LINE L2 -481 2833 2725 1078 117 0 25 chr1 8540151 8540314 -273653350 - AluSg/x SINE Alu -17 293 135 628 260 235 6 chr1 8540387 8540749 -273652915 - L2 LINE L2 -703 2611 2167 1500 157 8 16 chr1 8540899 8541147 -273652517 + AluJb SINE Alu 53 298 -14 232 167 0 42 chr1 8541396 8541444 -273652220 + T-rich Low_complexity Low_complexity 2 47 0 191 61 30 0 chr1 8542008 8542041 -273651623 + (CAA)n Simple_repeat Simple_repeat 1 34 0 5859 23 0 0 chr1 8542275 8542891 -273650773 + SVA Other Other 770 1385 -1 380 92 184 0 chr1 8542892 8542968 -273650696 + MER41A LTR ERV1 383 472 -82 186 43 0 0 chr1 8542969 8542992 -273650672 + (A)n Simple_repeat Simple_repeat 1 23 0 2034 122 0 69 chr1 8543111 8543446 -273650218 - AluSx SINE Alu 0 312 1 213 146 0 0 chr1 8543472 8543520 -273650144 + (TG)n Simple_repeat Simple_repeat 1 48 0 686 132 15 73 chr1 8543520 8543656 -273650008 - FRAM SINE Alu -9 167 40 2543 75 0 0 chr1 8544195 8544503 -273649161 - AluSx SINE Alu -4 308 1 1925 139 20 3 chr1 8544978 8545273 -273648391 + AluSx SINE Alu 1 300 -12 2770 167 12 37 chr1 8545958 8546528 -273647136 + L1MB5 LINE L1 5584 6139 -35 2308 89 10 7 chr1 8546535 8546828 -273646836 + AluSq SINE Alu 6 299 -14 2106 115 10 3 chr1 8546841 8547145 -273646519 + AluJb SINE Alu 7 312 0 2281 104 3 0 chr1 8547150 8547449 -273646215 + AluSg SINE Alu 3 302 -8 883 137 0 0 chr1 8547449 8547573 -273646091 + FLAM_C SINE Alu 12 135 -8 1104 89 0 0 chr1 8547894 8548029 -273645635 + AluSq/x SINE Alu 1 135 -177 2323 112 0 13 chr1 8548029 8548343 -273645321 + AluSx SINE Alu 1 310 -2 1013 208 19 102 chr1 8548646 8548968 -273644696 + AluJo SINE Alu 1 295 -7 2328 95 16 0 chr1 8549058 8549362 -273644302 + AluSq SINE Alu 1 309 -4 2193 105 0 0 chr1 8549693 8549970 -273643694 - AluSx SINE Alu -34 278 2 2183 137 0 0 chr1 8549974 8550274 -273643390 - AluSx SINE Alu -8 304 5 812 168 0 0 chr1 8550431 8550556 -273643108 - FLAM_A SINE Alu -8 125 1 2116 138 0 3 chr1 8550610 8550906 -273642758 + AluSx SINE Alu 1 295 -17 585 118 12 0 chr1 8550909 8550994 -273642670 + AluSx SINE Alu 2 87 -225 467 272 54 16 chr1 8551152 8551336 -273642328 + LTR21A LTR ERV1 300 490 -15 2531 179 43 14 chr1 8551337 8551894 -273641770 + HERVFH21 LTR ERV1 6 578 -5951 * 17789 188 20 23 chr1 8551885 8554169 -273639495 + HERVFH21 LTR ERV1 536 2831 -3698 1931 134 4 0 chr1 8554169 8554438 -273639226 - AluSg SINE Alu -40 270 1 17789 188 20 23 chr1 8554438 8556079 -273637585 + HERVFH21 LTR ERV1 2831 4476 -2053 2443 266 28 21 chr1 8556597 8557421 -273636243 + HERVFH21 LTR ERV1 5700 6529 0 484 261 56 17 chr1 8557589 8557769 -273635895 + LTR21A LTR ERV1 300 486 -19 1376 142 110 0 chr1 8557769 8557988 -273635676 + AluSx SINE Alu 70 312 0 2715 42 0 6 chr1 8558039 8558351 -273635313 - AluY SINE Alu -1 310 1 938 144 0 0 chr1 8558445 8558577 -273635087 + FLAM_A SINE Alu 1 132 -1 185 309 0 0 chr1 8558620 8558675 -273634989 + L2 LINE L2 2486 2540 -774 622 282 81 69 chr1 8558722 8558795 -273634869 - MLT1L LTR MaLR 0 615 544 2390 105 0 0 chr1 8558795 8559101 -273634563 + AluSg1 SINE Alu 1 306 -3 622 282 81 69 chr1 8559101 8559346 -273634318 - MLT1L LTR MaLR -71 544 288 1979 140 0 45 chr1 8559346 8559515 -273634149 - AluJo SINE Alu -10 302 152 2002 131 46 0 chr1 8559515 8559798 -273633866 - AluSx SINE Alu -15 297 2 1979 140 0 45 chr1 8559798 8559942 -273633722 - AluJo SINE Alu -160 152 3 622 282 81 69 chr1 8559942 8560030 -273633634 - MLT1L LTR MaLR -327 288 203 247 295 0 0 chr1 8559997 8560058 -273633606 - MLT1J LTR MaLR -340 171 111 * 200 111 0 28 chr1 8560194 8560230 -273633434 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 336 302 31 0 chr1 8560230 8560359 -273633305 - L1M4 LINE L1 -2400 3746 3614 599 234 8 0 chr1 8560363 8560487 -273633177 - MER58B DNA MER1_type -6 335 211 523 340 87 4 chr1 8560533 8560774 -273632890 - L1M4 LINE L1 -2539 3607 3347 606 125 40 125 chr1 8560779 8560830 -273632834 - L1MB2 LINE L1 0 6171 6117 2290 104 0 0 chr1 8560830 8561129 -273632535 - AluSq SINE Alu -14 299 1 606 125 40 125 chr1 8561129 8561229 -273632435 - L1MB2 LINE L1 -54 6117 6033 2165 133 0 3 chr1 8561241 8561541 -273632123 - AluSx SINE Alu -13 299 1 1664 177 0 16 chr1 8561541 8561858 -273631806 - L1MB4 LINE L1 -43 6137 5826 2269 109 0 28 chr1 8561928 8562249 -273631415 - AluSx SINE Alu 0 312 1 389 20 20 0 chr1 8562250 8562300 -273631364 + (TTTTA)n Simple_repeat Simple_repeat 2 52 0 1898 130 0 60 chr1 8562300 8562600 -273631064 - AluSx SINE Alu -30 282 1 585 143 0 31 chr1 8562605 8562703 -273630961 - AluJo SINE Alu -176 136 42 252 147 0 0 chr1 8562773 8562816 -273630848 + Alu SINE Alu 1 36 -272 2103 226 69 39 chr1 8562919 8563171 -273630493 - L1ME3A LINE L1 -202 5968 5725 1919 156 21 0 chr1 8563171 8563459 -273630205 - AluJb SINE Alu -18 294 1 2103 226 69 39 chr1 8563459 8563673 -273629991 - L1ME3A LINE L1 -445 5725 5519 2494 104 11 16 chr1 8563673 8564039 -273629625 - THE1B LTR MaLR 0 364 1 2103 226 69 39 chr1 8564039 8564362 -273629302 - L1ME3A LINE L1 -651 5519 5157 662 160 48 40 chr1 8564363 8564488 -273629176 - FLAM_C SINE Alu -3 130 5 2491 86 0 0 chr1 8564535 8564838 -273628826 - AluY SINE Alu -8 303 1 2153 144 0 0 chr1 8564873 8565172 -273628492 - AluSx SINE Alu -13 299 1 2170 96 34 7 chr1 8565184 8565477 -273628187 - AluY SINE Alu -10 301 1 231 36 0 0 chr1 8565488 8565516 -273628148 + (A)n Simple_repeat Simple_repeat 1 28 0 1716 181 3 14 chr1 8565599 8565887 -273627777 + AluJb SINE Alu 1 285 -27 305 181 29 0 chr1 8565959 8566035 -273627629 - L1MC3 LINE L1 0 7785 7716 226 164 66 0 chr1 8566068 8566129 -273627535 - L1ME3A LINE L1 -1779 4367 4303 1826 175 21 0 chr1 8566198 8566484 -273627180 + AluJb SINE Alu 2 293 -19 2181 102 0 3 chr1 8566490 8566815 -273626849 + AluSg SINE Alu 1 324 0 258 105 0 0 chr1 8566989 8567027 -273626637 + (A)n Simple_repeat Simple_repeat 1 38 0 1399 128 5 0 chr1 8567381 8567577 -273626087 - AluSx SINE Alu -115 197 1 2013 118 29 0 chr1 8567925 8568245 -273625419 - AluSx SINE Alu 0 312 1 394 227 31 0 chr1 8568247 8568344 -273625320 + HERVL40 LTR ERVL 3519 3618 -1912 1940 129 0 48 chr1 8568370 8568532 -273625132 - AluJb SINE Alu -18 294 126 243 0 0 0 chr1 8568532 8568559 -273625105 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2130 121 4 0 chr1 8568559 8568840 -273624824 - AluSg SINE Alu -28 282 1 1940 129 0 48 chr1 8568840 8568985 -273624679 - AluJb SINE Alu -184 128 1 909 141 83 26 chr1 8569279 8569471 -273624193 + MLT1D LTR MaLR 1 203 -302 738 179 46 35 chr1 8569895 8569939 -273623725 + MER61D LTR ERV1 314 356 -145 4083 98 19 20 chr1 8569939 8570534 -273623130 - LTR61 LTR ERV1 0 595 2 738 179 46 35 chr1 8570534 8570672 -273622992 + MER61D LTR ERV1 356 483 -18 1305 152 26 4 chr1 8570713 8570944 -273622720 + MLT1D LTR MaLR 270 505 0 2587 83 0 0 chr1 8572066 8572379 -273621285 + AluSq SINE Alu 1 313 0 1399 128 5 0 chr1 8572744 8572940 -273620724 - AluSx SINE Alu -115 197 1 2361 110 0 0 chr1 8573303 8573613 -273620051 - AluSx SINE Alu -2 310 1 857 118 28 107 chr1 8574035 8574213 -273619451 + AluJb SINE Alu 149 312 0 223 244 282 0 chr1 8575290 8575368 -273618296 + MIR3 SINE MIR 62 161 -47 186 304 144 24 chr1 8575375 8575478 -273618186 - MIR SINE MIR -23 239 117 1930 153 36 0 chr1 8575478 8575779 -273617885 + AluJb SINE Alu 1 312 0 186 304 144 24 chr1 8575779 8575800 -273617864 - MIR SINE MIR -145 117 100 347 189 175 34 chr1 8575825 8575951 -273617713 - MIR SINE MIR -78 130 1 2234 113 20 0 chr1 8577220 8577521 -273616143 - AluSx SINE Alu -5 307 1 2374 110 0 0 chr1 8577983 8578293 -273615371 - AluSx SINE Alu -2 310 1 2176 101 14 10 chr1 8579040 8579337 -273614327 - AluSp SINE Alu -15 298 1 2435 87 0 0 chr1 8579877 8580175 -273613489 + AluSx SINE Alu 1 298 -14 2348 93 0 13 chr1 8581171 8581473 -273612191 - AluSx SINE Alu -14 298 1 294 376 99 3 chr1 8581537 8581714 -273611950 - MIR3 SINE MIR -65 143 2 1920 145 14 3 chr1 8581776 8582073 -273611591 + AluJb SINE Alu 1 300 -12 2470 102 0 0 chr1 8582123 8582436 -273611228 + AluSq SINE Alu 1 313 0 23 0 0 0 chr1 8582990 8583013 -273610651 + AT_rich Low_complexity Low_complexity 1 23 0 2035 150 0 0 chr1 8583016 8583309 -273610355 - AluSx SINE Alu -19 293 1 2195 124 0 0 chr1 8583335 8583626 -273610038 - AluSx SINE Alu -21 291 1 2277 102 0 0 chr1 8583853 8584146 -273609518 - AluSx SINE Alu -19 293 1 2201 136 94 26 chr1 8584147 8584531 -273609133 - L1MC1 LINE L1 -236 6097 5741 1652 169 25 18 chr1 8584531 8584809 -273608855 + AluJb SINE Alu 1 280 -32 348 24 0 0 chr1 8584809 8584850 -273608814 + (CAAT)n Simple_repeat Simple_repeat 4 44 0 2201 136 94 26 chr1 8584850 8584920 -273608744 - L1MC1 LINE L1 -591 5742 5611 4009 104 3 28 chr1 8584920 8585363 -273608301 + MER41A LTR ERV1 1 428 -126 2034 131 24 0 chr1 8585363 8585654 -273608010 - AluSx SINE Alu -14 298 1 4009 104 3 28 chr1 8585654 8585778 -273607886 + MER41A LTR ERV1 428 554 0 475 253 20 0 chr1 8585778 8585924 -273607740 - L1M4 LINE L1 -1567 4579 4431 997 127 0 0 chr1 8585930 8586064 -273607600 - AluSq/x SINE Alu -178 134 1 23 0 0 0 chr1 8586069 8586092 -273607572 + AT_rich Low_complexity Low_complexity 1 23 0 299 239 125 11 chr1 8586150 8586238 -273607426 - MER5C DNA MER1_type -203 121 24 1932 150 7 3 chr1 8586286 8586573 -273607091 + AluJb SINE Alu 3 290 -22 2348 99 0 0 chr1 8587131 8587424 -273606240 + AluSx SINE Alu 2 294 -18 1850 138 29 42 chr1 8587567 8587878 -273605786 + AluSx SINE Alu 1 307 -5 2354 108 0 0 chr1 8588525 8588830 -273604834 - AluSx SINE Alu -7 305 1 1568 186 0 32 chr1 8588856 8589136 -273604528 + AluJo SINE Alu 1 271 -41 2318 106 3 0 chr1 8589354 8589655 -273604009 - AluSq SINE Alu -9 304 3 2376 109 3 0 chr1 8590500 8590803 -273602861 - AluSq SINE Alu -9 304 1 2324 113 3 0 chr1 8590839 8591140 -273602524 + AluSq SINE Alu 1 302 -11 2271 112 3 0 chr1 8591140 8591435 -273602229 + AluSx SINE Alu 1 297 -15 1419 243 82 54 chr1 8591439 8591933 -273601731 + L1M4c LINE L1 816 1295 -5268 423 0 0 0 chr1 8591933 8591980 -273601684 + (CA)n Simple_repeat Simple_repeat 2 48 0 1419 243 82 54 chr1 8591980 8592852 -273600812 + L1M4c LINE L1 1295 2385 -4178 2294 89 13 22 chr1 8593147 8593462 -273600202 + AluSx SINE Alu 1 312 0 1054 298 74 70 chr1 8594300 8594738 -273598926 + L2 LINE L2 779 1214 -2100 1817 164 10 7 chr1 8594738 8595030 -273598634 - AluJb SINE Alu -19 293 1 1054 298 74 70 chr1 8595030 8595426 -273598238 + L2 LINE L2 1214 1620 -1694 2213 129 3 3 chr1 8595426 8595735 -273597929 - AluSc SINE Alu 0 309 1 1054 298 74 70 chr1 8595735 8595882 -273597782 + L2 LINE L2 1620 1765 -1549 2185 128 0 0 chr1 8596151 8596455 -273597209 + AluSx SINE Alu 1 304 -8 2923 155 27 37 chr1 8596456 8596795 -273596869 - L1MB3 LINE L1 -37 6146 5805 2248 112 3 0 chr1 8596795 8597090 -273596574 + AluSx SINE Alu 1 296 -16 2923 155 27 37 chr1 8597090 8597294 -273596370 - L1MB3 LINE L1 -378 5805 5607 2359 82 26 7 chr1 8597294 8597599 -273596065 - AluSx SINE Alu -1 311 1 2923 155 27 37 chr1 8597599 8597653 -273596011 - L1MB3 LINE L1 -576 5607 5554 30 0 0 0 chr1 8598154 8598184 -273595480 + AT_rich Low_complexity Low_complexity 1 30 0 888 129 0 0 chr1 8598188 8598312 -273595352 - FLAM_C SINE Alu -19 124 1 297 324 176 5 chr1 8598485 8598689 -273594975 - MIR SINE MIR -11 251 13 2193 129 7 0 chr1 8599153 8599455 -273594209 - AluSx SINE Alu -8 304 1 1113 256 66 69 chr1 8599543 8599923 -273593741 + L1MEd LINE L1 572 952 -5177 2175 118 3 7 chr1 8599923 8600220 -273593444 + AluSq SINE Alu 1 296 -17 2301 104 0 3 chr1 8600224 8600523 -273593141 + AluSg SINE Alu 2 299 -11 1113 256 66 69 chr1 8600523 8600805 -273592859 + L1MEd LINE L1 955 1236 -4893 192 40 0 0 chr1 8600805 8600830 -273592834 + (TC)n Simple_repeat Simple_repeat 2 26 0 1113 256 66 69 chr1 8600830 8601117 -273592547 + L1MEd LINE L1 1236 1482 -4647 2036 123 23 10 chr1 8601117 8601425 -273592239 + AluSx SINE Alu 1 312 0 1113 256 66 69 chr1 8601425 8601455 -273592209 + L1MEd LINE L1 1482 1511 -4618 2118 124 27 0 chr1 8601691 8601990 -273591674 - AluSx SINE Alu -5 307 1 2255 114 3 0 chr1 8602501 8602800 -273590864 - AluSx SINE Alu -12 300 1 1934 163 0 10 chr1 8603239 8603540 -273590124 - AluJo SINE Alu -14 298 1 2286 81 0 40 chr1 8603582 8603904 -273589760 + AluY SINE Alu 3 311 0 2208 83 17 10 chr1 8604219 8604507 -273589157 - AluSx SINE Alu -22 290 1 922 101 20 0 chr1 8604886 8605034 -273588630 + (TTTC)n Simple_repeat Simple_repeat 2 152 0 1921 137 11 4 chr1 8605034 8605312 -273588352 - AluJb SINE Alu -32 280 1 2422 84 0 7 chr1 8606451 8606759 -273586905 - AluSc SINE Alu -3 306 1 2094 138 17 0 chr1 8606759 8607050 -273586614 - AluSx SINE Alu -16 296 1 943 178 11 11 chr1 8607394 8607568 -273586096 - FRAM SINE Alu -3 173 1 365 274 162 0 chr1 8607791 8607908 -273585756 - MIR SINE MIR -112 150 15 317 353 59 0 chr1 8607922 8608041 -273585623 - L2 LINE L2 -1 3271 3146 235 308 185 10 chr1 8608229 8608424 -273585240 - L2 LINE L2 -384 2930 2702 2275 72 11 7 chr1 8608607 8608959 -273584705 + AluSc SINE Alu 1 353 0 321 256 11 0 chr1 8608986 8609076 -273584588 + L1MC5 LINE L1 5711 5801 -2007 2154 102 17 7 chr1 8609102 8609395 -273584269 - AluSg SINE Alu -14 296 1 2697 48 0 0 chr1 8609541 8609852 -273583812 + AluY SINE Alu 1 311 0 1973 158 7 0 chr1 8610383 8610680 -273582984 + AluJb SINE Alu 1 299 -13 907 226 18 148 chr1 8610685 8610743 -273582921 + L1MC5 LINE L1 6530 6594 -1214 2255 148 0 0 chr1 8610743 8611061 -273582603 - 7SLRNA srpRNA srpRNA -2 318 1 907 226 18 148 chr1 8611061 8611179 -273582485 + L1MC5 LINE L1 6594 6726 -1082 2280 105 0 3 chr1 8611179 8611474 -273582190 - AluSx SINE Alu -18 294 1 907 226 18 148 chr1 8611474 8611571 -273582093 + L1MC5 LINE L1 6726 6834 -974 839 148 0 15 chr1 8611571 8611706 -273581958 + FLAM_C SINE Alu 1 133 0 907 226 18 148 chr1 8611706 8612053 -273581611 + L1MC5 LINE L1 6834 7001 -807 1062 231 162 35 chr1 8612072 8612449 -273581215 - MLT1D LTR MaLR 0 505 81 224 194 0 0 chr1 8612449 8612485 -273581179 + polypyrimidine Low_complexity Low_complexity 3 38 0 462 152 26 53 chr1 8612486 8612637 -273581027 + CT-rich Low_complexity Low_complexity 2 148 0 1556 171 16 49 chr1 8612662 8612967 -273580697 - AluJb SINE Alu -17 295 1 267 141 169 42 chr1 8612967 8613038 -273580626 - MLT1D LTR MaLR -418 87 8 266 200 11 89 chr1 8613073 8613163 -273580501 + L1MC5 LINE L1 7151 7233 -728 228 67 0 0 chr1 8613201 8613231 -273580433 + (CTATT)n Simple_repeat Simple_repeat 3 32 0 320 308 31 31 chr1 8613342 8613472 -273580192 + L2 LINE L2 3184 3313 0 917 285 88 9 chr1 8613480 8613984 -273579680 + L1ME2 LINE L1 5268 5829 -335 2520 71 0 10 chr1 8614013 8614324 -273579340 + AluSc SINE Alu 1 308 -1 1877 164 3 19 chr1 8614352 8614669 -273578995 + AluJb SINE Alu 1 312 0 1506 209 31 48 chr1 8614761 8615115 -273578549 + MER7A DNA MER2_type 1 346 0 1876 124 44 0 chr1 8615181 8615455 -273578209 + AluJb SINE Alu 12 297 -15 564 144 33 39 chr1 8615477 8615658 -273578006 + GA-rich Low_complexity Low_complexity 1 180 0 218 314 14 0 chr1 8615798 8615868 -273577796 + L2 LINE L2 2694 2764 -550 2346 95 7 0 chr1 8615933 8616228 -273577436 - AluSx SINE Alu -15 297 1 273 303 162 22 chr1 8616228 8616413 -273577251 + L2 LINE L2 2754 2964 -350 848 165 0 23 chr1 8616935 8617068 -273576596 + AluJo SINE Alu 5 134 -178 255 281 247 0 chr1 8617115 8617261 -273576403 - MIR SINE MIR -75 187 6 2016 138 3 0 chr1 8617643 8617939 -273575725 + AluJo SINE Alu 1 297 -15 2078 141 0 0 chr1 8618191 8618488 -273575176 - AluJo SINE Alu -13 299 3 2156 131 0 0 chr1 8618520 8618832 -273574832 + AluSx SINE Alu 1 312 0 285 227 0 15 chr1 8619448 8619514 -273574150 - MIR3 SINE MIR -31 177 113 1889 125 38 0 chr1 8620584 8620871 -273572793 + AluSx SINE Alu 1 298 -14 1864 127 30 17 chr1 8621505 8621805 -273571859 - AluJb SINE Alu -8 304 1 407 335 42 47 chr1 8621817 8622053 -273571611 + L1MEc LINE L1 2099 2333 -4063 1695 139 63 33 chr1 8622070 8622373 -273571291 + AluJo SINE Alu 1 312 0 1932 109 4 0 chr1 8622406 8622671 -273570993 - AluSx SINE Alu -46 266 1 550 317 27 57 chr1 8623001 8623370 -273570294 + L2 LINE L2 2331 2688 -626 1658 153 42 14 chr1 8623387 8623674 -273569990 - AluJo SINE Alu -17 295 1 391 49 49 0 chr1 8623677 8623738 -273569926 + (TTTC)n Simple_repeat Simple_repeat 3 66 0 545 319 59 11 chr1 8623787 8624060 -273569604 - MLT1K LTR MaLR 0 588 303 2037 112 53 30 chr1 8624199 8624538 -273569126 - THE1B LTR MaLR -17 347 1 262 329 0 0 chr1 8624538 8624611 -273569053 + L1MEd LINE L1 446 518 -5601 358 323 51 15 chr1 8624614 8624809 -273568855 + L1MC5 LINE L1 7498 7699 -262 2000 118 0 7 chr1 8624816 8625113 -273568551 - AluSc SINE Alu -14 295 1 251 293 65 83 chr1 8625712 8625942 -273567722 - MIR SINE MIR -4 258 35 2169 125 0 0 chr1 8625945 8626257 -273567407 - AluSx SINE Alu 0 312 1 2280 78 3 0 chr1 8626353 8626649 -273567015 + AluY SINE Alu 1 297 -14 2146 97 7 0 chr1 8626650 8626939 -273566725 + AluSq SINE Alu 1 291 -22 1595 204 0 6 chr1 8626939 8627253 -273566411 - AluJo SINE Alu 0 312 1 2648 220 73 31 chr1 8627275 8627973 -273565691 - L1ME1 LINE L1 -36 6130 5394 2111 86 24 10 chr1 8627973 8628263 -273565401 - AluSq SINE Alu -19 294 1 2648 220 73 31 chr1 8628263 8628342 -273565322 - L1ME1 LINE L1 -772 5394 5320 869 189 0 0 chr1 8628343 8628524 -273565140 + FRAM SINE Alu 1 179 0 2052 206 57 66 chr1 8628530 8628583 -273565081 - L1ME1 LINE L1 -813 5333 5281 2247 87 10 0 chr1 8628583 8628883 -273564781 - AluSq SINE Alu -10 303 1 2052 206 57 66 chr1 8628883 8629307 -273564357 - L1ME1 LINE L1 -865 5281 4890 2194 111 0 3 chr1 8629307 8629614 -273564050 + AluSx SINE Alu 1 306 -6 2052 206 57 66 chr1 8629614 8629945 -273563719 - L1ME1 LINE L1 -1256 4890 4557 1479 220 12 30 chr1 8629943 8630347 -273563317 - L1ME1 LINE L1 -2313 3833 3437 * 938 78 117 0 chr1 8630356 8630484 -273563180 - AluSq/x SINE Alu -170 143 1 435 293 0 0 chr1 8630484 8630607 -273563057 - L1ME1 LINE L1 -2690 3456 3334 884 167 13 7 chr1 8631363 8631513 -273562151 + FRAM SINE Alu 1 151 -15 2283 112 0 0 chr1 8631524 8631836 -273561828 + AluSx SINE Alu 1 312 0 351 0 0 0 chr1 8631933 8631972 -273561692 + (TG)n Simple_repeat Simple_repeat 1 39 0 669 232 107 28 chr1 8632058 8632275 -273561389 + MLT1G LTR MaLR 360 503 -2 1973 135 14 0 chr1 8632607 8632904 -273560760 - AluJb SINE Alu -10 302 2 4944 164 15 38 chr1 8633007 8633984 -273559680 + LTR5 LTR ERVK 1 955 -14 2226 108 7 0 chr1 8634763 8635068 -273558596 + AluSx SINE Alu 1 307 -5 1412 163 118 11 chr1 8635267 8635537 -273558127 + AluJo SINE Alu 1 299 -13 433 158 95 120 chr1 8636533 8636691 -273556973 - MER106B DNA MER1_type -10 1049 896 1459 125 103 0 chr1 8636767 8636999 -273556665 + AluSx SINE Alu 57 312 0 1773 132 28 14 chr1 8637452 8637739 -273555925 - AluSx SINE Alu -21 291 1 250 234 0 0 chr1 8638400 8638447 -273555217 - L2 LINE L2 -1 3312 3266 180 282 0 99 chr1 8638831 8638902 -273554762 - MIR SINE MIR -34 228 165 1145 95 24 0 chr1 8638922 8639090 -273554574 - AluSg/x SINE Alu -8 302 131 245 269 30 0 chr1 8639449 8639516 -273554148 - L2 LINE L2 -551 2763 2695 2108 106 10 0 chr1 8639791 8640083 -273553581 - AluSx SINE Alu -17 295 1 1960 145 7 3 chr1 8640641 8640945 -273552719 - AluJb SINE Alu -7 305 1 438 318 63 16 chr1 8641012 8641201 -273552463 + MER20B DNA MER1_type 542 739 -44 2281 101 0 0 chr1 8641533 8641840 -273551824 - AluSq SINE Alu 0 313 7 2354 198 43 19 chr1 8642013 8642553 -273551111 + MER74A LTR ERVL 6 558 0 849 144 0 34 chr1 8642560 8642706 -273550958 + FLAM_C SINE Alu 1 141 -2 2245 104 7 0 chr1 8642929 8643238 -273550426 - AluSx SINE Alu -1 311 1 1957 147 0 10 chr1 8644067 8644380 -273549284 - AluSq SINE Alu -3 310 1 996 90 0 8 chr1 8644384 8644518 -273549146 - AluSq/x SINE Alu -180 133 1 340 312 102 5 chr1 8644947 8645133 -273548531 + MIR3 SINE MIR 2 205 -3 1667 172 26 23 chr1 8646909 8647211 -273546453 - AluJo SINE Alu -9 303 1 1737 140 0 14 chr1 8647511 8647790 -273545874 + AluJb SINE Alu 1 275 -37 582 183 0 0 chr1 8647790 8647905 -273545759 + GA-rich Low_complexity Low_complexity 4 118 0 2861 146 74 40 chr1 8648047 8648279 -273545385 + MER39B LTR ERV1 1 223 -430 1723 100 4 0 chr1 8648279 8648544 -273545120 + AluSx SINE Alu 53 318 0 2861 146 74 40 chr1 8648544 8648915 -273544749 + MER39B LTR ERV1 223 626 -27 407 221 58 0 chr1 8648917 8649021 -273544643 + L2 LINE L2 1328 1437 -1877 395 266 202 45 chr1 8649056 8649368 -273544296 + L2 LINE L2 1621 1981 -1333 911 143 0 0 chr1 8650088 8650214 -273543450 + FLAM_C SINE Alu 1 126 -7 1263 184 148 42 chr1 8650654 8650830 -273542834 + MLT1A2 LTR MaLR 2 158 -216 2159 122 0 0 chr1 8650830 8651141 -273542523 + AluSx SINE Alu 1 311 -1 1263 184 148 42 chr1 8651141 8651301 -273542363 + MLT1A2 LTR MaLR 158 374 0 547 221 10 171 chr1 8651304 8651602 -273542062 + L3 LINE CR1 1313 1562 -15 631 122 0 0 chr1 8651857 8651947 -273541717 - Alu SINE Alu -9 301 212 2146 105 114 21 chr1 8651947 8652280 -273541384 + THE1B LTR MaLR 1 364 0 1564 119 0 0 chr1 8652280 8652498 -273541166 - AluSx SINE Alu -94 218 1 267 315 62 53 chr1 8653783 8654016 -273539648 - MIR SINE MIR -6 256 29 2378 68 0 0 chr1 8654514 8654807 -273538857 + AluY SINE Alu 1 293 -18 794 135 23 23 chr1 8654816 8654949 -273538715 + FLAM_C SINE Alu 1 133 0 2058 114 6 29 chr1 8655018 8655334 -273538330 - AluSx SINE Alu -3 309 1 308 276 69 9 chr1 8655346 8655462 -273538202 + MIR SINE MIR 74 196 -66 300 306 171 5 chr1 8655620 8655836 -273537828 + L2 LINE L2 1918 2169 -1145 301 294 147 54 chr1 8655899 8656103 -273537561 + L1 LINE L1 2970 3192 -2954 820 135 0 15 chr1 8656236 8656369 -273537295 + FLAM_C SINE Alu 13 143 0 2289 97 0 25 chr1 8656443 8656763 -273536901 - AluSx SINE Alu 0 312 1 308 276 69 9 chr1 8656775 8656891 -273536773 + MIR SINE MIR 74 196 -66 383 282 171 5 chr1 8657050 8657266 -273536398 + L2 LINE L2 1918 2169 -1145 746 235 41 101 chr1 8657859 8658246 -273535418 - L2 LINE L2 0 3313 2950 1955 132 0 7 chr1 8659328 8659486 -273534178 - AluSx SINE Alu -18 294 137 2401 71 0 13 chr1 8659486 8659797 -273533867 - AluY SINE Alu -4 307 1 1955 132 0 7 chr1 8659797 8659934 -273533730 - AluSx SINE Alu -175 137 1 1420 119 21 4 chr1 8659939 8660174 -273533490 - L1PA14 LINE L1 0 6161 5923 1858 149 0 10 chr1 8660507 8660815 -273532849 + AluJb SINE Alu 1 305 -7 1179 184 0 26 chr1 8660940 8661174 -273532490 - AluJb SINE Alu 0 312 85 1489 152 17 0 chr1 8661249 8661479 -273532185 - AluSx SINE Alu -78 234 1 760 203 0 0 chr1 8661480 8661608 -273532056 - AluSq/x SINE Alu -184 129 2 1052 232 0 20 chr1 8661612 8661858 -273531806 - MLT1D-int LTR MaLR -1130 241 1 734 169 0 0 chr1 8661860 8661996 -273531668 - MLT1D LTR MaLR 0 505 370 * 949 159 19 0 chr1 8661991 8662148 -273531516 + MSTD LTR MaLR 237 396 0 1796 186 0 0 chr1 8662369 8662681 -273530983 + AluJb SINE Alu 1 312 0 30 0 0 0 chr1 8663124 8663154 -273530510 + AT_rich Low_complexity Low_complexity 1 30 0 554 155 216 0 chr1 8663159 8663256 -273530408 - FLAM_C SINE Alu -24 119 2 389 241 0 0 chr1 8663480 8663563 -273530101 - L2 LINE L2 0 3272 3190 3868 197 65 117 chr1 8663656 8664979 -273528685 - MER52A LTR ERV1 0 1278 25 268 53 26 0 chr1 8664979 8665017 -273528647 + MER52A LTR ERV1 1 39 -1716 323 256 5 85 chr1 8665099 8665192 -273528472 - Charlie7 DNA MER1_type 0 2612 2542 2208 80 7 0 chr1 8665192 8665481 -273528183 - AluY SINE Alu -20 291 1 323 256 5 85 chr1 8665481 8665586 -273528078 - Charlie7 DNA MER1_type -70 2542 2430 1279 157 59 77 chr1 8665820 8666133 -273527531 - AluJo SINE Alu 0 308 1 450 359 69 7 chr1 8666226 8666530 -273527134 + L2 LINE L2 2632 2954 -360 239 231 19 0 chr1 8666629 8666681 -273526983 + L2 LINE L2 3247 3299 -14 250 288 113 38 chr1 8666686 8666846 -273526818 + L2 LINE L2 2233 2404 -910 1034 165 54 66 chr1 8667345 8667587 -273526077 - L1MC3 LINE L1 -1152 6633 6395 577 295 43 5 chr1 8667668 8667875 -273525789 - MIR SINE MIR -28 234 20 2180 149 30 25 chr1 8668311 8668673 -273524991 - THE1B LTR MaLR 0 364 1 1085 224 19 0 chr1 8668785 8668990 -273524674 - AluJb SINE Alu -19 293 85 424 213 4 107 chr1 8668990 8669102 -273524562 - AluSg/x SINE Alu -62 248 171 322 243 0 0 chr1 8669067 8669141 -273524523 - L2 LINE L2 -46 3267 3194 * 2557 77 0 3 chr1 8669163 8669474 -273524190 + AluY SINE Alu 1 310 -1 454 267 82 0 chr1 8673538 8673684 -273519980 + MIR SINE MIR 84 241 -21 182 339 25 16 chr1 8673950 8674071 -273519593 + MIR SINE MIR 109 230 -32 654 186 16 31 chr1 8674879 8675008 -273518656 + AluSq/x SINE Alu 1 127 -185 248 233 26 9 chr1 8675008 8675124 -273518540 + (TG)n Simple_repeat Simple_repeat 1 118 0 300 299 35 11 chr1 8675144 8675231 -273518433 + L1MC4 LINE L1 6615 6703 -1339 414 173 18 9 chr1 8675231 8675341 -273518323 + (TG)n Simple_repeat Simple_repeat 1 111 0 241 146 0 0 chr1 8675571 8675612 -273518052 + LTR54 LTR ERV1 402 442 -68 181 252 57 65 chr1 8676054 8676177 -273517487 - L2 LINE L2 -2858 456 335 2558 60 0 3 chr1 8676328 8676626 -273517038 - AluSq SINE Alu -16 297 1 424 132 0 15 chr1 8676652 8676720 -273516944 + AluS SINE Alu 2 68 -250 405 255 100 89 chr1 8676822 8677093 -273516571 + L1MC5 LINE L1 7492 7765 -196 221 94 75 0 chr1 8677095 8677148 -273516516 + (TA)n Simple_repeat Simple_repeat 2 58 0 1949 166 0 3 chr1 8677149 8677445 -273516219 - AluJb SINE Alu -17 295 1 6689 45 40 11 chr1 8677575 8678447 -273515217 + MER11D LTR ERVK 1 897 0 1056 149 18 0 chr1 8678525 8678693 -273514971 - AluJb SINE Alu -5 307 137 451 322 47 0 chr1 8679038 8679187 -273514477 - L1ME LINE L1 -359 5762 5607 2192 107 24 3 chr1 8679283 8679574 -273514090 - AluSx SINE Alu -15 297 1 1704 138 99 18 chr1 8680211 8680494 -273513170 - AluJo SINE Alu -6 306 1 297 115 0 167 chr1 8682452 8682626 -273511038 + (CCCCG)n Simple_repeat Simple_repeat 2 146 0 1683 152 38 3 chr1 8682840 8683130 -273510534 + AluSg SINE Alu 2 301 -9 2930 98 33 15 chr1 8683253 8683710 -273509954 - MER4C LTR ERV1 0 465 1 1871 151 11 0 chr1 8683793 8684077 -273509587 + AluJo SINE Alu 22 308 -4 770 83 9 0 chr1 8684094 8684203 -273509461 + MER83 LTR ERV1 1 110 -338 1651 164 78 55 chr1 8684206 8684589 -273509075 + MER83 LTR ERV1 56 447 -1 2418 95 0 0 chr1 8684696 8684990 -273508674 - AluSq SINE Alu -18 295 2 2384 98 0 0 chr1 8684991 8685286 -273508378 - AluSx SINE Alu -17 295 1 877 145 7 0 chr1 8685674 8685812 -273507852 - LTR23 LTR ERV1 0 437 299 2037 71 12 0 chr1 8685817 8686069 -273507595 - AluSq SINE Alu -10 303 49 1850 171 3 0 chr1 8686170 8686462 -273507202 + AluJb SINE Alu 18 310 -2 1958 94 36 50 chr1 8686496 8686773 -273506891 + AluSq SINE Alu 3 275 -38 467 146 0 11 chr1 8686773 8686862 -273506802 + (GGGA)n Simple_repeat Simple_repeat 4 91 0 3831 132 18 3 chr1 8686876 8687488 -273506176 - MER41B LTR ERV1 -14 621 1 922 133 0 0 chr1 8687488 8687631 -273506033 + L1PB2 LINE L1 6001 6143 -8 1190 185 93 0 chr1 8687643 8687902 -273505762 - LTR23 LTR ERV1 -154 283 1 2226 115 10 13 chr1 8688505 8688818 -273504846 - AluSx SINE Alu 0 312 1 4239 154 15 50 chr1 8688833 8689690 -273503974 - L1MB2 LINE L1 -17 6154 5328 510 111 0 0 chr1 8689782 8689863 -273503801 + LTR24C LTR ERV1 1 81 -554 411 54 0 0 chr1 8689910 8689966 -273503698 + LTR24C LTR ERV1 580 635 0 3599 147 26 36 chr1 8689973 8689993 -273503671 + L1MB5 LINE L1 5117 5136 -1038 1512 187 6 78 chr1 8689993 8690325 -273503339 + AluJb SINE Alu 5 312 0 3599 147 26 36 chr1 8690325 8690392 -273503272 + L1MB5 LINE L1 5136 5202 -972 596 202 73 0 chr1 8690392 8690516 -273503148 + FLAM_A SINE Alu 1 133 0 3599 147 26 36 chr1 8690516 8690831 -273502833 + L1MB5 LINE L1 5202 5519 -655 2049 163 0 0 chr1 8690831 8691131 -273502533 + AluSx SINE Alu 1 300 -12 3599 147 26 36 chr1 8691131 8691464 -273502200 + L1MB5 LINE L1 5519 5839 -335 757 183 0 0 chr1 8691464 8691595 -273502069 + FLAM_A SINE Alu 1 131 -2 3599 147 26 36 chr1 8691595 8691732 -273501932 + L1MB5 LINE L1 5839 5976 -198 754 194 127 18 chr1 8691886 8692117 -273501547 + L1MB5 LINE L1 5920 6174 0 232 179 0 0 chr1 8692127 8692166 -273501498 + Alu SINE Alu 250 288 -13 449 265 60 13 chr1 8692170 8692321 -273501343 - LTR37A LTR ERV1 -268 158 1 3057 116 27 51 chr1 8692431 8692572 -273501092 + MER41E LTR ERV1 1 144 -368 2246 117 0 7 chr1 8692572 8692879 -273500785 + AluSq SINE Alu 2 306 -7 3057 116 27 51 chr1 8692879 8692893 -273500771 + MER41E LTR ERV1 144 157 -355 2540 40 10 3 chr1 8692893 8693194 -273500470 + AluY SINE Alu 1 303 -8 3057 116 27 51 chr1 8693194 8693562 -273500102 + MER41E LTR ERV1 157 512 0 379 279 184 14 chr1 8693816 8693963 -273499701 + MER5A DNA MER1_type 18 189 0 2491 130 46 35 chr1 8694174 8694767 -273498897 - MER4E LTR ERV1 0 766 5 1209 136 45 112 chr1 8695232 8695406 -273498258 - LTR8A LTR ERV1 0 727 578 2168 150 0 6 chr1 8695406 8695720 -273497944 - AluSx SINE Alu 0 312 1 1209 136 45 112 chr1 8695720 8695829 -273497835 - LTR8A LTR ERV1 -149 578 463 1117 185 60 14 chr1 8695829 8696119 -273497545 + LTR19A LTR ERV1 1 357 -129 600 169 0 0 chr1 8696219 8696343 -273497321 + LTR19A-int LTR ERV1 1059 1182 -4404 46057 92 9 9 chr1 8696407 8696452 -273497212 + LTR19A-int LTR ERV1 1178 1222 -6497 2308 79 0 4 chr1 8696452 8696758 -273496906 + AluY SINE Alu 3 307 0 46057 92 9 9 chr1 8696758 8702285 -273491379 + LTR19A-int LTR ERV1 1222 6749 -970 2214 87 14 3 chr1 8702285 8702574 -273491090 + AluSp SINE Alu 5 296 -17 46057 92 9 9 chr1 8702574 8703545 -273490119 + LTR19A-int LTR ERV1 6749 7719 0 1875 151 158 28 chr1 8703545 8703975 -273489689 + LTR19A LTR ERV1 1 486 0 2261 150 57 50 chr1 8703975 8704435 -273489229 - LTR8A LTR ERV1 -264 463 1 2175 154 0 0 chr1 8704538 8704850 -273488814 + AluSx SINE Alu 1 312 0 225 114 29 0 chr1 8704860 8704895 -273488769 + U2 snRNA snRNA 3 38 -150 985 257 62 48 chr1 8705016 8705335 -273488329 + MER110A LTR ERV1 41 354 -114 2323 112 0 16 chr1 8705335 8705648 -273488016 + AluSg SINE Alu 1 308 -2 985 257 62 48 chr1 8705648 8705688 -273487976 + MER110A LTR ERV1 354 392 -76 3850 114 68 49 chr1 8705688 8706366 -273487298 + LTR8 LTR ERV1 1 691 0 985 257 62 48 chr1 8706366 8706425 -273487239 + MER110A LTR ERV1 392 466 -2 265 229 16 0 chr1 8706431 8706492 -273487172 + MER45 DNA AcHobo 1 62 -978 188 250 0 0 chr1 8706505 8706545 -273487119 + MIR SINE MIR 221 260 -2 627 130 52 0 chr1 8707363 8707478 -273486186 - AluSg/x SINE Alu -3 309 189 367 102 0 0 chr1 8707886 8707935 -273485729 + LTR8 LTR ERV1 643 691 0 184 256 47 0 chr1 8707981 8708024 -273485640 + MER5A DNA MER1_type 106 150 -39 28 0 0 0 chr1 8708275 8708303 -273485361 + AT_rich Low_complexity Low_complexity 1 28 0 1084 156 67 45 chr1 8708774 8708998 -273484666 + AluJb SINE Alu 79 307 -5 2219 112 0 26 chr1 8709017 8709321 -273484343 - AluSx SINE Alu -16 296 1 2235 110 7 10 chr1 8710093 8710401 -273483263 + AluSx SINE Alu 1 307 -5 997 147 13 6 chr1 8710879 8711036 -273482628 - AluJo/FRAM SINE Alu -11 301 144 251 154 0 19 chr1 8711038 8711090 -273482574 + Alu SINE Alu 252 302 0 2279 112 0 0 chr1 8711136 8711430 -273482234 - AluSq SINE Alu -19 294 1 2136 104 4 0 chr1 8712685 8712964 -273480700 + AluSx SINE Alu 1 280 -32 417 123 0 0 chr1 8713001 8713066 -273480598 + (CA)n Simple_repeat Simple_repeat 2 66 0 669 245 55 19 chr1 8713770 8714027 -273479637 + L2 LINE L2 2250 2515 -799 845 114 0 53 chr1 8714035 8714166 -273479498 - FLAM_C SINE Alu -14 129 6 410 273 140 49 chr1 8714169 8714649 -273479015 + L2 LINE L2 2520 3064 -249 2152 113 7 0 chr1 8714649 8714965 -273478699 + AluSx SINE Alu 1 318 0 410 273 140 49 chr1 8714965 8715123 -273478541 + L2 LINE L2 3064 3206 -107 958 166 0 0 chr1 8715324 8715469 -273478195 + AluJo SINE Alu 1 145 -167 1816 142 13 43 chr1 8715470 8715614 -273478050 + AluSx SINE Alu 1 133 -179 1934 149 7 10 chr1 8715614 8715910 -273477754 + AluSx SINE Alu 4 298 -14 1816 142 13 43 chr1 8715910 8716068 -273477596 + AluSx SINE Alu 133 294 -18 207 0 0 0 chr1 8716225 8716248 -273477416 + (TCC)n Simple_repeat Simple_repeat 1 23 0 698 134 188 54 chr1 8716614 8716763 -273476901 - AluJo/FRAM SINE Alu -10 302 134 2260 71 39 0 chr1 8716763 8717043 -273476621 - AluY SINE Alu -20 291 1 2436 99 0 0 chr1 8717047 8717350 -273476314 - AluSx SINE Alu -9 303 1 2065 153 0 7 chr1 8717354 8717662 -273476002 - AluSx SINE Alu -6 306 1 201 293 116 80 chr1 8717984 8718209 -273475455 + L2 LINE L2 3034 3266 -6 2397 107 0 0 chr1 8718209 8718519 -273475145 + AluSx SINE Alu 1 310 -2 248 321 76 23 chr1 8718975 8719106 -273474558 + MIR SINE MIR 103 240 -22 1760 116 0 0 chr1 8719730 8719955 -273473709 + AluSg/x SINE Alu 73 297 -13 500 309 15 13 chr1 8720139 8720407 -273473257 - MER115 DNA AcHobo -339 354 25 2419 92 0 0 chr1 8720427 8720721 -273472943 - AluSx SINE Alu -18 294 1 335 296 165 24 chr1 8720889 8721095 -273472569 + MIR SINE MIR 7 241 -21 2324 96 3 0 chr1 8721630 8721921 -273471743 + AluSx SINE Alu 1 292 -20 396 0 0 0 chr1 8721925 8721969 -273471695 + (CA)n Simple_repeat Simple_repeat 2 45 0 2039 117 10 29 chr1 8722007 8722314 -273471350 + AluSx SINE Alu 1 301 -11 1391 115 0 0 chr1 8722737 8722919 -273470745 + AluSg/x SINE Alu 129 310 0 1653 177 71 159 chr1 8723123 8723756 -273469908 + MER63C DNA MER1_type 1 531 -529 947 205 91 24 chr1 8723756 8723966 -273469698 + MER58A DNA MER1_type 1 224 0 1653 177 71 159 chr1 8723966 8724243 -273469421 + MER63C DNA MER1_type 531 831 -99 214 98 39 0 chr1 8724243 8724294 -273469370 + (TA)n Simple_repeat Simple_repeat 2 54 0 344 207 135 0 chr1 8724294 8724405 -273469259 + MER63 DNA MER1_type 801 926 -135 1794 77 65 35 chr1 8724410 8724671 -273468993 + AluSg SINE Alu 26 294 -16 1698 206 3 0 chr1 8724674 8724966 -273468698 - AluJo SINE Alu -19 293 1 403 162 15 0 chr1 8725000 8725068 -273468596 - FRAM/FAM SINE Alu -108 68 1 447 206 98 0 chr1 8725074 8725176 -273468488 + MER63 DNA MER1_type 946 1057 -3 2326 79 3 7 chr1 8725403 8725694 -273467970 + AluSx SINE Alu 1 290 -22 212 75 0 25 chr1 8725697 8725737 -273467927 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 236 259 19 0 chr1 8725834 8725888 -273467776 + L3 LINE CR1 880 934 -643 1174 202 82 32 chr1 8726504 8726679 -273466985 + MLT1B LTR MaLR 2 167 -223 1826 116 33 14 chr1 8726679 8726955 -273466709 + AluJb SINE Alu 1 281 -31 * 2283 113 0 3 chr1 8726954 8727256 -273466408 - AluSx SINE Alu -11 301 1 1174 202 82 32 chr1 8727256 8727500 -273466164 + MLT1B LTR MaLR 468 373 -17 2122 99 11 3 chr1 8728974 8729278 -273464386 + AluSx SINE Alu 1 306 0 2157 123 0 10 chr1 8729278 8729586 -273464078 + AluSx SINE Alu 1 305 -7 1460 219 26 6 chr1 8730371 8730718 -273462946 + L1MC4 LINE L1 7280 7633 -409 958 170 0 6 chr1 8730818 8730977 -273462687 - AluSq SINE Alu -19 294 137 1285 170 208 0 chr1 8731096 8731523 -273462141 + Charlie1b DNA MER1_type 6 523 0 2175 95 63 0 chr1 8731729 8732014 -273461650 + AluSq SINE Alu 1 303 -10 241 202 228 70 chr1 8732717 8732788 -273460876 + MER112 DNA MER1_type 8 66 -194 348 24 0 0 chr1 8732788 8732829 -273460835 + (TG)n Simple_repeat Simple_repeat 1 41 0 241 202 228 70 chr1 8732829 8732871 -273460793 + MER112 DNA MER1_type 66 139 -121 198 91 0 0 chr1 8732882 8732915 -273460749 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 1793 137 128 18 chr1 8732927 8733097 -273460567 + THE1C LTR MaLR 2 152 -223 198 0 0 0 chr1 8733097 8733119 -273460545 + (TC)n Simple_repeat Simple_repeat 1 22 0 1793 137 128 18 chr1 8733119 8733285 -273460379 + THE1C LTR MaLR 152 375 0 523 124 165 10 chr1 8733285 8733382 -273460282 - AluJb SINE Alu -200 112 1 291 207 81 58 chr1 8733382 8733469 -273460195 + MER112 DNA MER1_type 167 255 -5 423 200 161 141 chr1 8734198 8734349 -273459315 + L1M4 LINE L1 3670 3817 -2329 1997 105 14 18 chr1 8734349 8734662 -273459002 + AluSx SINE Alu 1 312 0 423 200 161 141 chr1 8734662 8734775 -273458889 + L1M4 LINE L1 3817 3926 -2220 1979 156 17 3 chr1 8734775 8735077 -273458587 - AluSx SINE Alu -6 306 1 423 200 161 141 chr1 8735077 8735215 -273458449 + L1M4 LINE L1 3926 4082 -2064 248 235 202 45 chr1 8735219 8735466 -273458198 + L1MEd LINE L1 586 871 -5248 1728 211 7 45 chr1 8735474 8735563 -273458101 + L1M4 LINE L1 4709 4800 -1346 1830 104 94 14 chr1 8735563 8735850 -273457814 + AluSx SINE Alu 1 310 -2 1728 211 7 45 chr1 8735850 8735976 -273457688 + L1M4 LINE L1 4800 4929 -1217 1696 174 9 25 chr1 8735976 8736110 -273457554 + AluJo SINE Alu 1 136 -176 1993 142 0 32 chr1 8736110 8736426 -273457238 + AluSx SINE Alu 1 306 -6 1696 174 9 25 chr1 8736426 8736608 -273457056 + AluJo SINE Alu 136 312 0 1728 211 7 45 chr1 8736608 8736836 -273456828 + L1M4 LINE L1 4929 5136 -1010 502 298 35 67 chr1 8736844 8737126 -273456538 + L1MEd LINE L1 2253 2525 -3604 369 162 10 30 chr1 8737301 8737400 -273456264 + GA-rich Low_complexity Low_complexity 2 98 0 5519 141 72 15 chr1 8737400 8738125 -273455539 + L1MC1 LINE L1 5114 5929 -404 2289 82 0 13 chr1 8738125 8738430 -273455234 + AluSc SINE Alu 1 301 -8 5519 141 72 15 chr1 8738430 8738855 -273454809 + L1MC1 LINE L1 5929 6328 -5 686 179 42 2 chr1 8738861 8739098 -273454566 + AluJ SINE Alu 2 290 -22 27 0 0 0 chr1 8739118 8739145 -273454519 + AT_rich Low_complexity Low_complexity 1 27 0 350 222 56 58 chr1 8739164 8739312 -273454352 + L1MCa LINE L1 1941 2064 -4362 425 67 67 0 chr1 8739313 8739417 -273454247 + (TA)n Simple_repeat Simple_repeat 2 112 0 302 279 29 44 chr1 8739421 8739557 -273454107 + L1MCa LINE L1 1931 2064 -4362 200 59 29 0 chr1 8739558 8739592 -273454072 + (TA)n Simple_repeat Simple_repeat 2 36 0 306 197 61 0 chr1 8739772 8739838 -273453826 + L1MCa LINE L1 1995 2064 -4362 * 375 285 30 17 chr1 8739785 8739945 -273453719 - L1MC4 LINE L1 -1340 6982 1906 268 43 43 0 chr1 8739946 8739992 -273453672 + (TA)n Simple_repeat Simple_repeat 2 49 0 2350 120 0 0 chr1 8740002 8740310 -273453354 + AluSx SINE Alu 1 308 -4 434 202 141 46 chr1 8740321 8740667 -273452997 + L1MEd LINE L1 844 1250 -4869 554 310 35 4 chr1 8740695 8740924 -273452740 + L1M4 LINE L1 4460 4695 -1451 1877 170 3 0 chr1 8741053 8741335 -273452329 + AluJo SINE Alu 1 283 -29 652 266 144 9 chr1 8741501 8741646 -273452018 + MIR SINE MIR 3 127 -135 2362 102 0 3 chr1 8741646 8741950 -273451714 + AluSg SINE Alu 1 303 -7 652 266 144 9 chr1 8741950 8742033 -273451631 + MIR SINE MIR 127 262 0 1960 148 7 7 chr1 8742044 8742347 -273451317 + AluSx SINE Alu 1 303 -9 2374 89 3 0 chr1 8742592 8742895 -273450769 - AluSq SINE Alu -9 304 1 218 230 71 95 chr1 8742949 8743075 -273450589 + MIR3 SINE MIR 82 204 -4 2242 121 20 0 chr1 8743418 8743724 -273449940 + AluSx SINE Alu 1 312 0 950 176 78 5 chr1 8744815 8745019 -273448645 - MER20 DNA MER1_type 0 219 1 308 262 85 32 chr1 8745261 8745424 -273448240 + MIR SINE MIR 15 187 -62 2585 52 10 7 chr1 8745541 8745849 -273447815 - AluY SINE Alu -2 309 1 1982 134 33 16 chr1 8745943 8746248 -273447416 - AluJo SINE Alu -2 310 1 880 106 29 39 chr1 8746400 8746800 -273446864 + (CA)n Simple_repeat Simple_repeat 1 396 0 556 134 43 12 chr1 8746853 8747107 -273446557 + (CA)n Simple_repeat Simple_repeat 1 262 0 464 145 120 51 chr1 8747225 8747342 -273446322 - L2 LINE L2 0 3313 3189 1963 163 10 3 chr1 8747419 8747726 -273445938 + AluJb SINE Alu 3 311 -1 1914 158 3 23 chr1 8747736 8748039 -273445625 + AluJo SINE Alu 3 299 -13 318 264 32 8 chr1 8748757 8748882 -273444782 - L2 LINE L2 -292 2980 2853 2132 123 0 0 chr1 8749008 8749317 -273444347 + AluSx SINE Alu 1 309 0 246 160 0 0 chr1 8749475 8749525 -273444139 + L1M4 LINE L1 5408 5457 -727 508 68 55 0 chr1 8749542 8749615 -273444049 - L1MA8 LINE L1 -341 5950 5874 1101 173 19 39 chr1 8749699 8749776 -273443888 - AluJo SINE Alu -103 209 132 2296 112 3 10 chr1 8749776 8750090 -273443574 - AluSx SINE Alu 0 312 1 2813 19 0 3 chr1 8750091 8750403 -273443261 - AluY SINE Alu 0 311 1 1101 173 19 39 chr1 8750403 8750531 -273443133 - AluJo SINE Alu -179 133 6 184 364 11 0 chr1 8750670 8750758 -273442906 - L2 LINE L2 -785 2529 2441 969 201 91 80 chr1 8750961 8751177 -273442487 + LTR56 LTR ERV1 9 221 -216 2385 83 0 13 chr1 8751177 8751478 -273442186 + AluSg SINE Alu 1 297 -13 969 201 91 80 chr1 8751478 8751708 -273441956 + LTR56 LTR ERV1 221 437 0 391 186 145 40 chr1 8751998 8752122 -273441542 + MIR SINE MIR 14 150 -112 681 107 34 6 chr1 8752123 8752359 -273441305 + AluJ SINE Alu 1 292 -20 259 284 54 0 chr1 8752388 8752462 -273441202 + MIR SINE MIR 180 257 -5 198 254 45 15 chr1 8752492 8752559 -273441105 - MIR SINE MIR -131 131 63 1739 169 3 23 chr1 8752638 8752940 -273440724 - AluJb SINE Alu -16 296 1 1883 170 10 6 chr1 8753104 8753415 -273440249 + AluJo SINE Alu 1 312 0 573 211 59 0 chr1 8754123 8754275 -273439389 + MER20 DNA MER1_type 56 216 -3 2477 86 0 0 chr1 8754313 8754614 -273439050 + AluSx SINE Alu 1 301 -11 834 232 75 46 chr1 8754640 8754854 -273438810 - MIR SINE MIR -10 252 29 2201 83 0 0 chr1 8754854 8755118 -273438546 - AluSq SINE Alu -11 302 39 834 232 75 46 chr1 8755118 8755144 -273438520 - MIR SINE MIR -233 29 5 2509 81 7 0 chr1 8756477 8756785 -273436879 - AluSq SINE Alu -3 310 1 2166 94 0 0 chr1 8757532 8757808 -273435856 + AluSx SINE Alu 1 276 -36 389 279 85 0 chr1 8758287 8758452 -273435212 + (CCCCAG)n Simple_repeat Simple_repeat 1 179 0 618 124 171 0 chr1 8758708 8758813 -273434851 + FRAM SINE Alu 46 168 -8 221 302 93 35 chr1 8758873 8759045 -273434619 - L2 LINE L2 -665 2649 2468 2129 116 19 41 chr1 8759078 8759396 -273434268 + AluSx SINE Alu 1 311 -1 581 272 241 18 chr1 8759662 8760044 -273433620 + MLT1J LTR MaLR 43 509 -2 3532 176 48 38 chr1 8760626 8761003 -273432661 - L1MB7 LINE L1 -1 6183 5811 2152 107 3 10 chr1 8761003 8761303 -273432361 - AluSx SINE Alu -13 299 2 3532 176 48 38 chr1 8761303 8761598 -273432066 - L1MB7 LINE L1 -373 5811 5498 1351 145 123 45 chr1 8761598 8761747 -273431917 - AluJo SINE Alu -22 290 154 2411 93 0 0 chr1 8761747 8762047 -273431617 - AluSq SINE Alu -11 302 3 1351 145 123 45 chr1 8762047 8762166 -273431498 - AluJo SINE Alu -158 154 1 3532 176 48 38 chr1 8762166 8762339 -273431325 - L1MB7 LINE L1 -686 5498 5328 285 128 0 0 chr1 8762339 8762386 -273431278 + (TC)n Simple_repeat Simple_repeat 2 48 0 2232 125 3 0 chr1 8762394 8762699 -273430965 - AluSx SINE Alu -6 306 1 1206 198 24 10 chr1 8762699 8762988 -273430676 - L1MB7 LINE L1 -809 5337 5042 1019 221 36 50 chr1 8762974 8763064 -273430600 - L1MB7 LINE L1 -1346 4800 4710 * 2040 140 7 0 chr1 8763064 8763357 -273430307 - AluSx SINE Alu -13 299 5 1019 221 36 50 chr1 8763357 8763624 -273430040 - L1MB7 LINE L1 -1436 4710 4448 686 169 46 23 chr1 8763699 8763829 -273429835 + AluJo/FLAM SINE Alu 1 133 -169 2177 110 16 7 chr1 8763829 8764139 -273429525 + AluSq SINE Alu 1 313 0 388 288 137 36 chr1 8764151 8764290 -273429374 - L1ME3A LINE L1 -23 6147 5995 555 169 0 0 chr1 8764313 8764402 -273429262 - FLAM_A SINE Alu -46 96 8 907 208 11 60 chr1 8764457 8764722 -273428942 - L1ME3A LINE L1 -224 5946 5695 23 0 0 0 chr1 8765210 8765233 -273428431 + AT_rich Low_complexity Low_complexity 1 23 0 2284 94 3 7 chr1 8765753 8766052 -273427612 + AluY SINE Alu 3 300 -11 6798 116 3 8 chr1 8766056 8767056 -273426608 + HERVFH19I LTR ERV1 1210 2204 -5515 2182 74 0 0 chr1 8767160 8767417 -273426247 - AluY SINE Alu -54 257 1 2610 121 36 5 chr1 8767443 8767832 -273425832 + HERVFH19I LTR ERV1 1 401 -7318 * 2877 137 11 4 chr1 8767825 8768292 -273425372 + HERVFH19I LTR ERV1 702 1171 -4415 824 114 14 2 chr1 8768677 8768900 -273424764 + AluJ SINE Alu 29 300 -12 294 202 83 89 chr1 8769198 8769382 -273424282 + MLT1C LTR MaLR 103 268 -199 2037 106 24 3 chr1 8769426 8769719 -273423945 + AluSx SINE Alu 1 299 -13 1706 161 4 4 chr1 8770024 8770304 -273423360 - AluJb SINE Alu -18 294 15 1957 114 19 62 chr1 8770831 8771156 -273422508 - AluSx SINE Alu -1 311 1 183 337 101 6 chr1 8771189 8771358 -273422306 + L2 LINE L2 2468 2652 -662 629 123 170 0 chr1 8771421 8771527 -273422137 - FRAM SINE Alu -7 169 46 1366 113 10 0 chr1 8772872 8773076 -273420588 + MLT2A2 LTR ERVL 1 206 -247 832 116 68 27 chr1 8773077 8773223 -273420441 + AluSq/x SINE Alu 1 152 -161 351 153 0 0 chr1 8773224 8773283 -273420381 + Alu SINE Alu 241 299 -2 * 1817 81 18 56 chr1 8773265 8773464 -273420200 + MLT2A2 LTR ERVL 181 386 -67 2161 86 30 7 chr1 8773464 8773765 -273419899 + AluY SINE Alu 1 308 -3 1817 81 18 56 chr1 8773765 8773785 -273419879 + MLT2A2 LTR ERVL 386 405 -48 1909 147 3 3 chr1 8773785 8774085 -273419579 + AluSx SINE Alu 1 300 -12 1817 81 18 56 chr1 8774085 8774148 -273419516 + MLT2A2 LTR ERVL 405 453 0 1839 157 10 13 chr1 8774819 8774997 -273418667 - AluJb SINE Alu 0 312 134 2232 96 0 7 chr1 8774997 8775299 -273418365 - AluSq SINE Alu -13 300 1 1839 157 10 13 chr1 8775299 8775433 -273418231 - AluJb SINE Alu -178 134 1 2123 192 47 5 chr1 8775713 8776141 -273417523 + L1MB4 LINE L1 5696 6141 -39 248 189 0 0 chr1 8776141 8776178 -273417486 + Alu SINE Alu 1 37 -265 604 124 0 0 chr1 8776178 8776267 -273417397 - AluSg/x SINE Alu -9 301 213 1048 113 38 6 chr1 8776273 8776433 -273417231 - AluSq SINE Alu -148 165 1 279 277 64 14 chr1 8776445 8776586 -273417078 + L2 LINE L2 2700 2847 -467 233 211 197 0 chr1 8776590 8776661 -273417003 - MLT1E2 LTR MaLR -368 258 174 980 153 13 0 chr1 8776677 8776834 -273416830 - FRAM SINE Alu -1 175 17 1550 164 54 0 chr1 8777059 8777339 -273416325 + AluJb SINE Alu 1 295 -17 1769 101 4 4 chr1 8777395 8777642 -273416022 - AluSq SINE Alu -66 247 1 22 56 0 0 chr1 8778082 8778118 -273415546 + AT_rich Low_complexity Low_complexity 1 36 0 611 214 29 46 chr1 8778130 8778303 -273415361 + L1MD2 LINE L1 6180 6349 -10 * 1361 168 51 9 chr1 8778279 8778580 -273415084 + L1MD3 LINE L1 7600 7994 -1 2511 51 3 6 chr1 8778782 8779094 -273414570 + AluSq SINE Alu 3 313 0 1310 119 0 10 chr1 8779696 8779890 -273413774 - AluSx SINE Alu -57 255 64 1650 125 33 22 chr1 8779898 8780170 -273413494 - AluSx SINE Alu -23 289 15 1833 139 14 7 chr1 8780656 8780950 -273412714 - AluJb SINE Alu -16 296 1 790 138 69 0 chr1 8780954 8781097 -273412567 - MLT1B LTR MaLR -215 175 23 337 189 0 0 chr1 8781097 8781150 -273412514 + Alu SINE Alu 1 53 -249 * 361 65 0 0 chr1 8781145 8781191 -273412473 + FLAM SINE Alu 81 126 -7 2434 80 0 0 chr1 8781204 8781515 -273412149 + AluSx SINE Alu 1 311 -1 199 342 17 42 chr1 8781731 8781851 -273411813 + L3b LINE CR1 1218 1334 -249 201 138 0 0 chr1 8782171 8782200 -273411464 + (GGAA)n Simple_repeat Simple_repeat 3 31 0 832 171 0 11 chr1 8782202 8782383 -273411281 + GA-rich Low_complexity Low_complexity 1 179 0 1742 131 26 35 chr1 8782385 8782698 -273410966 + AluSx SINE Alu 1 310 -2 547 190 107 133 chr1 8782978 8783325 -273410339 - Charlie4a DNA MER1_type -19 489 152 952 139 0 0 chr1 8783352 8783523 -273410141 + FRAM SINE Alu 2 172 0 653 171 8 0 chr1 8784491 8784614 -273409050 - L1MB7 LINE L1 -16 6168 6045 28 29 0 0 chr1 8784615 8784650 -273409014 + AT_rich Low_complexity Low_complexity 1 35 0 1327 155 5 0 chr1 8784656 8784869 -273408795 - AluJo SINE Alu -24 288 75 2076 104 21 0 chr1 8785052 8785341 -273408323 + AluSx SINE Alu 1 295 -17 257 0 0 29 chr1 8786118 8786152 -273407512 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 276 272 93 25 chr1 8786251 8786444 -273407220 + MIR SINE MIR 2 197 -31 1941 108 29 55 chr1 8786546 8786853 -273406811 + AluSq SINE Alu 1 299 -14 265 298 46 53 chr1 8788052 8788183 -273405481 + MER5A DNA MER1_type 46 175 -14 1948 109 30 46 chr1 8788260 8788562 -273405102 - AluSx SINE Alu -15 297 1 841 170 0 0 chr1 8788975 8789116 -273404548 + FLAM_C SINE Alu 1 141 -2 1591 204 31 28 chr1 8789156 8789544 -273404120 + MLT2C1 LTR ERVL 1 389 -8 673 141 0 113 chr1 8789752 8789894 -273403770 - AluJo SINE Alu -178 134 9 1406 131 49 16 chr1 8789898 8790143 -273403521 - AluJo SINE Alu -18 294 42 496 306 153 0 chr1 8790558 8790774 -273402890 - MIR SINE MIR 0 262 14 2195 100 0 0 chr1 8792349 8792639 -273401025 - AluY SINE Alu -21 290 1 203 322 17 0 chr1 8792831 8792890 -273400774 - L2 LINE L2 -10 3303 3244 2218 103 3 0 chr1 8793285 8793586 -273400078 + AluSx SINE Alu 3 304 -8 895 132 0 0 chr1 8794178 8794314 -273399350 - AluJb SINE Alu -176 136 1 240 111 0 0 chr1 8794340 8794376 -273399288 + (CA)n Simple_repeat Simple_repeat 2 37 0 1735 156 30 7 chr1 8794472 8794767 -273398897 - AluJo SINE Alu -10 302 1 2022 85 26 29 chr1 8795222 8795528 -273398136 - AluSg SINE Alu -5 305 1 2186 91 13 3 chr1 8795540 8795849 -273397815 - AluSx SINE Alu 0 312 1 1506 162 0 81 chr1 8796575 8796722 -273396942 + AluJb SINE Alu 1 108 -204 2233 103 0 3 chr1 8796722 8797023 -273396641 + AluSx SINE Alu 2 301 -11 1506 162 0 81 chr1 8797023 8797208 -273396456 + AluJb SINE Alu 108 306 -6 224 209 0 0 chr1 8799624 8799667 -273393997 - L2 LINE L2 0 3272 3230 297 280 118 0 chr1 8799702 8799795 -273393869 - L2 LINE L2 -338 2976 2873 297 322 68 1 chr1 8800067 8800213 -273393451 + MIR SINE MIR 18 169 -67 1971 148 0 0 chr1 8800441 8800739 -273392925 - AluJo SINE Alu -14 298 1 2170 92 7 13 chr1 8801567 8801872 -273391792 + AluSx SINE Alu 1 303 -9 531 287 51 19 chr1 8802091 8802207 -273391457 - MER2 DNA MER2_type 0 345 234 774 167 8 0 chr1 8802207 8802339 -273391325 + FLAM_C SINE Alu 1 133 0 531 287 51 19 chr1 8802339 8802438 -273391226 - MER2 DNA MER2_type -111 234 123 2163 92 3 0 chr1 8802439 8802733 -273390931 + AluSq SINE Alu 1 295 -18 774 134 84 0 chr1 8802735 8802854 -273390810 + AluSg/x SINE Alu 145 273 -39 590 215 25 0 chr1 8802861 8802982 -273390682 - MER2 DNA MER2_type -220 125 2 1378 122 22 17 chr1 8803502 8803732 -273389932 - AluJb SINE Alu 0 312 82 2104 131 0 0 chr1 8803833 8804131 -273389533 + AluSx SINE Alu 1 298 -14 454 183 0 24 chr1 8804131 8804207 -273389457 - FLAM_A SINE Alu -24 118 45 626 286 57 40 chr1 8804427 8804675 -273388989 - MIR SINE MIR -3 259 8 2789 199 46 33 chr1 8804768 8805350 -273388314 - MLT1E LTR MaLR -3 590 1 221 0 0 33 chr1 8806218 8806248 -273387416 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1058 162 5 79 chr1 8806787 8806948 -273386716 - MER20 DNA MER1_type -4 215 72 2220 119 0 0 chr1 8806948 8807251 -273386413 - AluSx SINE Alu -9 303 1 1058 162 5 79 chr1 8807251 8807305 -273386359 - MER20 DNA MER1_type -147 72 16 907 83 15 8 chr1 8808010 8808142 -273385522 - AluSp SINE Alu -180 133 1 255 125 0 0 chr1 8809549 8809589 -273384075 + (T)n Simple_repeat Simple_repeat 1 40 0 638 281 50 15 chr1 8810574 8810657 -273383007 - MLT1L LTR MaLR 0 615 536 1596 170 23 13 chr1 8810657 8810782 -273382882 + AluJo SINE Alu 1 123 -189 183 42 0 0 chr1 8810782 8810806 -273382858 + (CAAAC)n Simple_repeat Simple_repeat 1 24 0 1596 170 23 13 chr1 8810806 8810980 -273382684 + AluJo SINE Alu 123 303 -9 638 281 50 15 chr1 8810980 8811095 -273382569 - MLT1L LTR MaLR -79 536 410 476 238 57 0 chr1 8811135 8811257 -273382407 - MLT1L LTR MaLR -324 291 163 259 284 12 12 chr1 8811300 8811381 -273382283 - MLT1L LTR MaLR -534 81 1 355 358 0 0 chr1 8811452 8811547 -273382117 + L1MC4 LINE L1 6614 6708 -1334 2114 112 3 3 chr1 8811568 8811864 -273381800 + AluSq SINE Alu 3 298 -15 180 77 0 0 chr1 8811981 8812007 -273381657 + (T)n Simple_repeat Simple_repeat 1 26 0 2098 97 16 10 chr1 8812533 8812842 -273380822 - AluSx SINE Alu -1 311 1 1971 115 0 17 chr1 8813083 8813411 -273380253 - AluSq SINE Alu 0 323 1 1362 179 80 7 chr1 8813413 8813687 -273379977 - AluJb SINE Alu -18 294 1 1988 147 0 6 chr1 8814867 8815181 -273378483 - AluSx SINE Alu 0 312 1 363 169 0 0 chr1 8816601 8816660 -273377004 - AluJ/FLAM SINE Alu -233 69 11 885 137 82 0 chr1 8816666 8816812 -273376852 - AluJo/FRAM SINE Alu -11 301 144 2096 120 3 0 chr1 9017360 9017660 -273176004 + AluSq SINE Alu 1 301 -12 205 346 0 26 chr1 9017714 9017792 -273175872 - MIR SINE MIR -70 192 117 2630 102 24 0 chr1 9019989 9020399 -273173265 - MER83 LTR ERV1 -28 420 1 1020 238 114 76 chr1 9020399 9020697 -273172967 + MLT1D LTR MaLR 28 352 -153 1919 137 0 64 chr1 9020697 9021026 -273172638 - AluSx SINE Alu -4 308 1 1020 238 114 76 chr1 9021026 9021187 -273172477 + MLT1D LTR MaLR 352 505 0 409 255 51 51 chr1 9021434 9021591 -273172073 - MIR SINE MIR -1 261 105 1632 174 27 7 chr1 9021633 9021926 -273171738 + L1MB5 LINE L1 5874 6172 -2 2219 69 0 14 chr1 9024305 9024595 -273169069 - AluSc SINE Alu -20 289 4 453 295 36 24 chr1 9024928 9025094 -273168570 - MER5A DNA MER1_type -1 188 21 192 77 0 0 chr1 9026338 9026364 -273167300 + (TA)n Simple_repeat Simple_repeat 2 27 0 300 137 0 0 chr1 9028144 9028195 -273165469 + (TCC)n Simple_repeat Simple_repeat 2 52 0 1613 164 72 10 chr1 9028195 9028487 -273165177 - AluSg SINE Alu 0 310 1 34 0 0 0 chr1 9028492 9028526 -273165138 + AT_rich Low_complexity Low_complexity 1 34 0 1851 138 3 3 chr1 9028574 9029024 -273164640 - AluJb SINE Alu 0 450 1 211 147 0 0 chr1 9029308 9029342 -273164322 - MIR SINE MIR -28 234 201 2034 119 3 28 chr1 9029581 9029901 -273163763 - AluSx SINE Alu 0 312 1 1646 140 37 34 chr1 9029902 9030224 -273163440 - THE1B LTR MaLR -41 323 1 407 243 6 105 chr1 9030308 9030489 -273163175 - MLT1K LTR MaLR 0 588 426 905 199 21 16 chr1 9030513 9030699 -273162965 + MER53 DNA DNA 3 189 0 300 127 0 0 chr1 9031920 9031975 -273161689 + (GA)n Simple_repeat Simple_repeat 1 55 0 508 283 337 4 chr1 9032693 9033159 -273160505 - L2 LINE L2 -867 2447 1827 1181 259 97 12 chr1 9033167 9033591 -273160073 - MLT1C LTR MaLR -1 466 7 1011 96 0 15 chr1 9033892 9034061 -273159603 - FLAM_C SINE Alu 0 167 1 207 100 0 0 chr1 9034939 9034969 -273158695 + (TTCC)n Simple_repeat Simple_repeat 1 30 0 194 241 35 17 chr1 9036272 9036330 -273157334 + MIR SINE MIR 88 146 -62 1917 136 10 3 chr1 9036462 9036756 -273156908 - AluJb SINE Alu -16 296 1 258 160 0 0 chr1 9036756 9036806 -273156858 - AluJb SINE Alu -166 136 87 262 343 73 7 chr1 9037223 9037360 -273156304 + MIR SINE MIR 102 247 -15 2202 97 0 3 chr1 9038236 9038526 -273155138 - AluSq SINE Alu -24 289 1 236 210 12 111 chr1 9038621 9038638 -273155026 - L2 LINE L2 -2 3311 3294 2041 131 0 7 chr1 9038638 9038935 -273154729 - AluSx SINE Alu -17 295 1 236 210 12 111 chr1 9038935 9038998 -273154666 - L2 LINE L2 -19 3294 3239 453 267 215 0 chr1 9039193 9039365 -273154299 + MIR SINE MIR 4 212 -50 192 344 62 0 chr1 9039406 9039502 -273154162 - MIR SINE MIR -97 165 64 813 165 0 8 chr1 9040527 9040660 -273153004 + FLAM_C SINE Alu 1 132 -1 320 330 160 53 chr1 9040884 9041184 -273152480 - L1MC4a LINE L1 -6 6115 5784 2109 63 0 0 chr1 9041475 9041730 -273151934 - AluY SINE Alu -56 255 1 742 112 0 8 chr1 9041755 9041880 -273151784 - MER4A LTR ERV1 -540 124 1 385 156 0 0 chr1 9041880 9041943 -273151721 - MER4E LTR ERV1 -716 63 1 271 267 58 0 chr1 9042099 9042185 -273151479 + MIR SINE MIR 61 151 -57 509 277 45 28 chr1 9042581 9042758 -273150906 + MIR SINE MIR 13 192 -70 2195 111 0 16 chr1 9042908 9043223 -273150441 - AluSx SINE Alu -2 310 1 1955 151 17 0 chr1 9043969 9044268 -273149396 + AluSx SINE Alu 1 304 -8 238 214 0 119 chr1 9044879 9044963 -273148701 - MER91 DNA MER1_type 0 140 67 2092 138 0 3 chr1 9045458 9045769 -273147895 + AluSx SINE Alu 1 310 -2 188 180 0 80 chr1 9046836 9046886 -273146778 - L2 LINE L2 -3 3310 3265 425 130 29 0 chr1 9046938 9047007 -273146657 + AluJ/FLAM SINE Alu 6 76 -236 582 217 12 103 chr1 9047250 9047458 -273146206 - MIR SINE MIR -62 146 10 405 300 73 13 chr1 9047571 9047608 -273146056 - MIR SINE MIR -102 160 127 2218 104 7 0 chr1 9047608 9047907 -273145757 + AluSx SINE Alu 1 301 -11 405 300 73 13 chr1 9047907 9048019 -273145645 - MIR SINE MIR -135 127 2 716 189 86 0 chr1 9048823 9048998 -273144666 + L1MB8 LINE L1 5989 6178 0 1518 156 130 7 chr1 9049065 9049325 -273144339 + AluJo SINE Alu 1 296 -6 2021 110 0 46 chr1 9049325 9049692 -273143972 + AluSx SINE Alu 1 312 0 278 365 19 0 chr1 9049997 9050104 -273143560 + MIR3 SINE MIR 74 182 -26 2095 125 3 3 chr1 9050482 9050778 -273142886 + AluSx SINE Alu 1 296 -16 194 241 35 17 chr1 9050910 9050968 -273142696 - MIR SINE MIR -62 146 88 207 100 0 0 chr1 9052271 9052301 -273141363 + (GGAA)n Simple_repeat Simple_repeat 1 30 0 1011 96 0 15 chr1 9053179 9053314 -273140350 + FLAM_C SINE Alu 1 133 0 1197 257 97 12 chr1 9053630 9054054 -273139610 + MLT1C LTR MaLR 7 466 -1 883 296 259 10 chr1 9054062 9054758 -273138906 + L2 LINE L2 1827 2695 -619 2331 97 0 0 chr1 9054760 9055060 -273138604 - AluSg SINE Alu -10 300 1 1167 157 0 2 chr1 9057108 9057466 -273136198 + (TCCA)n Simple_repeat Simple_repeat 1 536 0 227 156 67 0 chr1 9057474 9057519 -273136145 + (CCCA)n Simple_repeat Simple_repeat 3 50 0 508 185 32 0 chr1 9057536 9057693 -273135971 + (TCCA)n Simple_repeat Simple_repeat 4 165 0 1934 75 47 0 chr1 9059667 9059921 -273133743 - AluSx SINE Alu -16 296 31 2147 97 7 0 chr1 9060546 9060844 -273132820 - AluSq SINE Alu -13 300 1 217 293 0 27 chr1 9061605 9061680 -273131984 + G-rich Low_complexity Low_complexity 2 74 0 245 217 0 43 chr1 9061778 9061847 -273131817 + G-rich Low_complexity Low_complexity 1 66 0 597 220 162 0 chr1 9061910 9062083 -273131581 - MER58A DNA MER1_type -12 212 12 342 209 0 0 chr1 9063239 9063297 -273130367 - MER58A DNA MER1_type 0 224 167 622 164 0 0 chr1 9063297 9063401 -273130263 - MER58A DNA MER1_type -1 106 3 247 274 16 0 chr1 9063854 9063916 -273129748 + (CA)n Simple_repeat Simple_repeat 1 63 0 444 201 17 17 chr1 9064365 9064544 -273129120 + (TG)n Simple_repeat Simple_repeat 2 180 0 381 131 0 0 chr1 9065483 9065544 -273128120 + (CA)n Simple_repeat Simple_repeat 2 62 0 2353 75 0 0 chr1 9066244 9066538 -273127126 + AluSx SINE Alu 8 301 -11 320 330 160 53 chr1 9066789 9067089 -273126575 + L1MC4a LINE L1 5784 6115 -6 813 165 0 8 chr1 9067313 9067446 -273126218 - FLAM_C SINE Alu -1 132 1 729 207 103 23 chr1 9070120 9070294 -273123370 + MER5A DNA MER1_type 2 189 0 2457 56 0 10 chr1 9070394 9070699 -273122965 + AluY SINE Alu 1 302 -9 2195 159 24 58 chr1 9070955 9071407 -273122257 + L1MB5 LINE L1 5738 6174 0 2379 74 3 0 chr1 9072480 9072779 -273120885 + AluSp SINE Alu 1 300 -13 247 250 25 25 chr1 9073027 9073107 -273120557 - L2 LINE L2 -79 3234 3155 256 276 0 40 chr1 9074380 9074456 -273119208 + MER5A DNA MER1_type 42 114 -75 2293 95 7 0 chr1 9077956 9078262 -273115402 + AluSp SINE Alu 1 308 -5 1760 149 30 27 chr1 9078654 9078955 -273114709 - AluJb SINE Alu -10 302 1 2214 117 0 0 chr1 9078964 9079262 -273114402 - AluSx SINE Alu -14 298 1 2848 158 16 60 chr1 9079341 9079961 -273113703 + L1MB3 LINE L1 5558 6150 -33 1099 82 0 0 chr1 9079961 9080096 -273113568 + AluSq/x SINE Alu 1 135 -178 2250 106 0 0 chr1 9080096 9080398 -273113266 + AluSx SINE Alu 1 302 -10 2372 92 0 0 chr1 9080851 9081156 -273112508 + AluSx SINE Alu 1 305 -7 876 125 0 22 chr1 9082278 9082414 -273111250 - FLAM_C SINE Alu 0 133 1 464 339 107 61 chr1 9082537 9082851 -273110813 + L1ME3 LINE L1 5320 5669 -493 2240 106 3 3 chr1 9082851 9083163 -273110501 + AluSq SINE Alu 1 312 -1 464 339 107 61 chr1 9083163 9083373 -273110291 + L1ME3 LINE L1 5669 5868 -294 586 157 25 33 chr1 9083539 9083660 -273110004 + L1MB3 LINE L1 5476 5595 -588 515 170 28 19 chr1 9083666 9083772 -273109892 + L1MB3 LINE L1 6077 6183 0 2030 85 32 21 chr1 9083985 9084296 -273109368 - AluSq SINE Alu 0 314 1 1446 122 22 0 chr1 9084759 9084981 -273108683 - AluSg/x SINE Alu 0 312 86 247 218 0 36 chr1 9085147 9085202 -273108462 + (CCCA)n Simple_repeat Simple_repeat 3 55 0 626 195 86 104 chr1 9085482 9085703 -273107961 + MER20 DNA MER1_type 1 217 -2 273 356 22 37 chr1 9085836 9085971 -273107693 + MIR3 SINE MIR 35 167 -41 428 206 28 9 chr1 9086040 9086147 -273107517 - MER103 DNA DNA -41 125 17 1061 211 72 0 chr1 9086574 9086783 -273106881 + MER58A DNA MER1_type 1 224 0 302 248 23 53 chr1 9087114 9087247 -273106417 - Charlie7 DNA MER1_type -47 2565 2437 866 287 122 26 chr1 9088489 9088914 -273104750 + L2 LINE L2 2845 3310 -3 537 284 129 10 chr1 9092091 9092292 -273101372 + MIR SINE MIR 24 248 -14 341 267 114 8 chr1 9092740 9092871 -273100793 + MER104 DNA Tc2 33 177 -3 188 379 0 0 chr1 9092929 9092995 -273100669 + L2 LINE L2 3198 3263 -9 367 241 24 0 chr1 9094212 9094295 -273099369 + L2 LINE L2 3224 3308 -5 218 57 0 75 chr1 9095040 9095093 -273098571 + (GGA)n Simple_repeat Simple_repeat 1 49 0 1894 108 46 29 chr1 9095268 9095574 -273098090 - AluSx SINE Alu -1 311 1 255 328 115 16 chr1 9095618 9095740 -273097924 + L2 LINE L2 3096 3229 -43 359 252 165 8 chr1 9095841 9095968 -273097696 - MIR SINE MIR -75 187 41 21 0 0 0 chr1 9096625 9096646 -273097018 + AT_rich Low_complexity Low_complexity 1 21 0 1420 170 50 47 chr1 9096699 9096999 -273096665 + AluJb SINE Alu 1 301 -11 251 273 22 65 chr1 9097157 9097296 -273096368 + L2 LINE L2 2935 3067 -205 273 276 95 0 chr1 9097568 9097673 -273095991 - MIR SINE MIR -103 159 45 239 234 0 0 chr1 9098056 9098103 -273095561 + (CA)n Simple_repeat Simple_repeat 2 48 0 234 0 0 0 chr1 9098589 9098615 -273095049 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 266 376 42 30 chr1 9098967 9099132 -273094532 + MIR SINE MIR 96 262 0 2268 113 0 0 chr1 9100278 9100588 -273093076 - AluSx SINE Alu -2 310 1 205 269 0 0 chr1 9100660 9100712 -273092952 - L2 LINE L2 0 3272 3221 646 251 58 72 chr1 9100978 9101043 -273092621 + MIR SINE MIR 32 96 -166 240 35 0 0 chr1 9101043 9101072 -273092592 + (TTTTA)n Simple_repeat Simple_repeat 5 33 0 646 251 58 72 chr1 9101072 9101085 -273092579 + MIR SINE MIR 96 108 -154 2047 93 0 11 chr1 9101085 9101365 -273092299 - AluSq SINE Alu -34 279 3 646 251 58 72 chr1 9101365 9101508 -273092156 + MIR SINE MIR 108 251 -11 21 36 0 0 chr1 9101715 9101743 -273091921 + AT_rich Low_complexity Low_complexity 1 28 0 279 349 23 16 chr1 9101946 9102075 -273091589 + L1MB8 LINE L1 6049 6178 0 1331 122 19 158 chr1 9102155 9102466 -273091198 + AluJo SINE Alu 1 268 -44 255 198 55 44 chr1 9103005 9103096 -273090568 + L1MC5 LINE L1 7835 7926 -35 21 0 0 0 chr1 9103300 9103321 -273090343 + AT_rich Low_complexity Low_complexity 1 21 0 2030 135 0 10 chr1 9103767 9104071 -273089593 - AluJb SINE Alu -11 301 1 2057 128 3 0 chr1 9104633 9104921 -273088743 - AluSx SINE Alu -23 289 1 1261 155 0 5 chr1 9104949 9105143 -273088521 + AluJo SINE Alu 87 279 -33 300 27 0 0 chr1 9105143 9105180 -273088484 + (CA)n Simple_repeat Simple_repeat 1 37 0 * 303 49 0 0 chr1 9105179 9105220 -273088444 + (TC)n Simple_repeat Simple_repeat 1 41 0 331 325 97 0 chr1 9105755 9105869 -273087795 + MIR SINE MIR 125 249 -13 1625 195 24 0 chr1 9106964 9107251 -273086413 + L1MB5 LINE L1 5881 6174 0 2221 128 0 0 chr1 9107254 9107566 -273086098 + AluSx SINE Alu 1 312 0 467 262 152 42 chr1 9107807 9107998 -273085666 + MIR SINE MIR 11 222 -40 290 287 215 15 chr1 9108559 9108754 -273084910 + L2 LINE L2 3039 3272 0 214 281 132 83 chr1 9108964 9109085 -273084579 - L2 LINE L2 0 3272 3146 1112 150 75 0 chr1 9109526 9109713 -273083951 + AluJo SINE Alu 5 205 -107 2135 166 55 36 chr1 9110033 9110504 -273083160 - MLT2B3 LTR ERVL 0 554 75 827 161 97 51 chr1 9110604 9110664 -273083000 - Ricksha DNA DNA -1634 412 343 6180 158 20 15 chr1 9110664 9111831 -273081833 - ERVL-B3 LTR ERVL 0 5764 4593 1110 182 120 8 chr1 9111831 9112089 -273081575 - MLT2B3 LTR ERVL -193 361 75 822 124 11 68 chr1 9112188 9112365 -273081299 - Ricksha DNA DNA -2833 413 247 13238 159 54 33 chr1 9112390 9112969 -273080695 - ERVL-B3 LTR ERVL -1177 4587 4022 1812 121 39 39 chr1 9112969 9113274 -273080390 - AluJo SINE Alu -7 305 1 13238 159 54 33 chr1 9113274 9114499 -273079165 - ERVL-B3 LTR ERVL -1742 4022 2825 1736 153 0 59 chr1 9114499 9114705 -273078959 - AluJo SINE Alu -11 301 84 2105 104 3 3 chr1 9114705 9114992 -273078672 + AluSq SINE Alu 3 289 -24 189 0 0 0 chr1 9114992 9115013 -273078651 + (GA)n Simple_repeat Simple_repeat 2 22 0 796 122 0 0 chr1 9115017 9115124 -273078540 - FLAM_C SINE Alu -35 108 2 13238 159 54 33 chr1 9115125 9116006 -273077658 - ERVL-B3 LTR ERVL -2939 2825 1964 744 94 0 0 chr1 9116006 9116112 -273077552 + (TTCA)n Simple_repeat Simple_repeat 4 109 0 13238 159 54 33 chr1 9116112 9117014 -273076650 - ERVL-B3 LTR ERVL -3800 1964 959 243 188 0 0 chr1 9117842 9117890 -273075774 + (TG)n Simple_repeat Simple_repeat 2 49 0 205 315 0 0 chr1 9117908 9117962 -273075702 + (TG)n Simple_repeat Simple_repeat 1 54 0 331 329 153 0 chr1 9118113 9118283 -273075381 + MIR SINE MIR 28 223 -39 369 102 0 0 chr1 9119231 9119290 -273074374 + (CA)n Simple_repeat Simple_repeat 1 59 0 369 230 0 0 chr1 9120099 9120277 -273073387 + (CA)n Simple_repeat Simple_repeat 1 178 0 438 176 0 0 chr1 9120334 9120453 -273073211 + (CA)n Simple_repeat Simple_repeat 2 120 0 273 259 0 0 chr1 9120480 9120627 -273073037 + (CA)n Simple_repeat Simple_repeat 2 148 0 22 56 0 0 chr1 9120842 9120878 -273072786 + GC_rich Low_complexity Low_complexity 1 36 0 21 57 0 0 chr1 9120924 9120959 -273072705 + GC_rich Low_complexity Low_complexity 1 35 0 21 107 0 0 chr1 9121098 9121182 -273072482 + GC_rich Low_complexity Low_complexity 1 84 0 226 281 16 16 chr1 9121234 9121362 -273072302 + C-rich Low_complexity Low_complexity 4 131 0 21 71 0 0 chr1 9121394 9121436 -273072228 + GC_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chr1 9121459 9121484 -273072180 + GC_rich Low_complexity Low_complexity 1 25 0 30 0 0 0 chr1 9121504 9121534 -273072130 + GC_rich Low_complexity Low_complexity 1 30 0 240 35 0 0 chr1 9121656 9121685 -273071979 + (CCCCG)n Simple_repeat Simple_repeat 1 29 0 34 0 0 0 chr1 9121723 9121757 -273071907 + GC_rich Low_complexity Low_complexity 1 34 0 971 187 0 65 chr1 9122760 9122990 -273070674 + AluJo SINE Alu 1 215 -97 2362 74 3 3 chr1 9122997 9123308 -273070356 + AluY SINE Alu 1 311 0 1552 120 0 4 chr1 9123307 9123532 -273070132 + AluSc SINE Alu 74 297 -12 * 430 210 0 0 chr1 9124665 9124746 -273068918 + MIR SINE MIR 60 140 -122 783 178 0 0 chr1 9125053 9125171 -273068493 - AluJb SINE Alu -194 118 1 29 28 0 0 chr1 9125611 9125647 -273068017 + AT_rich Low_complexity Low_complexity 1 36 0 250 319 119 38 chr1 9125714 9125899 -273067765 - L2 LINE L2 0 3313 3114 228 281 0 0 chr1 9126208 9126265 -273067399 - L2 LINE L2 -2 3270 3214 2014 133 0 3 chr1 9126389 9126683 -273066981 - AluSx SINE Alu -19 293 1 646 295 72 0 chr1 9126861 9127054 -273066610 - MIR SINE MIR -6 256 50 1324 181 116 18 chr1 9127448 9127785 -273065879 + MLT1C LTR MaLR 6 375 -92 314 311 196 5 chr1 9127796 9128005 -273065659 + L2 LINE L2 2589 2837 -477 480 242 109 0 chr1 9128177 9128305 -273065359 - MLT1H LTR MaLR 0 549 408 1617 83 41 0 chr1 9129275 9129493 -273064171 + AluSg SINE Alu 1 227 -83 586 257 140 23 chr1 9129493 9129800 -273063864 + HAL1 LINE L1 1874 2216 -291 896 186 54 15 chr1 9129839 9130043 -273063621 - MIR SINE MIR 0 262 51 450 231 42 88 chr1 9130043 9130259 -273063405 + HAL1 LINE L1 2280 2485 -22 1753 147 65 73 chr1 9130259 9130627 -273063037 - MLT1A1 LTR MaLR 0 365 1 1296 171 121 14 chr1 9131191 9131471 -273062193 - AluJb SINE Alu -2 310 1 515 186 0 17 chr1 9131916 9132034 -273061630 + GA-rich Low_complexity Low_complexity 1 116 0 295 276 29 9 chr1 9132682 9132787 -273060877 - MIR3 SINE MIR -21 187 81 349 335 67 11 chr1 9132898 9133077 -273060587 + L2 LINE L2 3071 3259 -13 323 250 113 8 chr1 9133483 9133607 -273060057 - MIR SINE MIR -110 152 16 262 173 12 12 chr1 9134033 9134114 -273059550 + G-rich Low_complexity Low_complexity 3 83 0 180 0 0 0 chr1 9134204 9134224 -273059440 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 375 119 0 0 chr1 9134643 9134710 -273058954 + (TC)n Simple_repeat Simple_repeat 1 67 0 907 199 21 16 chr1 9135931 9136117 -273057547 - MER53 DNA DNA 0 189 3 452 243 6 105 chr1 9136141 9136322 -273057342 + MLT1K LTR MaLR 426 588 0 2136 123 32 59 chr1 9136406 9136729 -273056935 + THE1B LTR MaLR 1 315 -49 1944 107 3 31 chr1 9136729 9136865 -273056799 + AluSx SINE Alu 1 139 -177 2264 73 3 10 chr1 9136865 9137165 -273056499 + AluY SINE Alu 1 298 -13 1944 107 3 31 chr1 9137165 9137352 -273056312 + AluSx SINE Alu 139 316 0 2136 123 32 59 chr1 9137352 9137401 -273056263 + THE1B LTR MaLR 315 364 0 34 55 0 0 chr1 9137709 9137764 -273055900 + AT_rich Low_complexity Low_complexity 1 55 0 2266 94 0 3 chr1 9137800 9138098 -273055566 - AluSx SINE Alu -15 297 1 249 264 81 0 chr1 9138649 9138736 -273054928 + MIR SINE MIR 52 147 -61 248 252 75 100 chr1 9139434 9139467 -273054197 + HAL1b LINE L1 794 826 -522 2032 122 10 19 chr1 9139467 9139779 -273053885 + AluSx SINE Alu 1 309 -3 248 252 75 100 chr1 9139779 9139935 -273053729 + HAL1b LINE L1 826 984 -364 2123 106 0 3 chr1 9139935 9140228 -273053436 - AluSx SINE Alu -20 292 1 248 252 75 100 chr1 9140228 9140438 -273053226 + HAL1b LINE L1 984 1184 -164 25 31 0 0 chr1 9140598 9140630 -273053034 + AT_rich Low_complexity Low_complexity 1 32 0 180 383 148 9 chr1 9141280 9141395 -273052269 - L2 LINE L2 0 3272 3142 380 298 8 0 chr1 9142073 9142197 -273051467 - MLT1K LTR MaLR -316 272 148 2242 70 28 0 chr1 9143248 9143534 -273050130 + AluSx SINE Alu 1 294 -18 1809 163 14 0 chr1 9146215 9146510 -273047154 - AluJo SINE Alu -2 310 12 296 319 113 11 chr1 9146518 9146703 -273046961 - MER112 DNA MER1_type -54 206 3 2025 108 17 0 chr1 9147362 9147657 -273046007 + AluSx SINE Alu 1 300 -12 898 115 0 0 chr1 9148688 9148810 -273044854 + FLAM_C SINE Alu 1 122 -21 218 286 60 65 chr1 9149114 9149282 -273044382 + L2 LINE L2 2924 3090 -182 327 256 144 24 chr1 9151547 9151672 -273041992 + MIR SINE MIR 107 246 -16 284 200 122 11 chr1 9152831 9152921 -273040743 + MIR SINE MIR 67 166 -96 361 327 168 13 chr1 9153049 9153669 -273039995 - L2 LINE L2 -296 3017 2288 396 181 44 72 chr1 9153734 9154149 -273039515 + (CAA)n Simple_repeat Simple_repeat 1 403 0 304 225 33 71 chr1 9154180 9154362 -273039302 + (CAA)n Simple_repeat Simple_repeat 2 176 0 387 185 52 58 chr1 9154391 9154564 -273039100 + (CAA)n Simple_repeat Simple_repeat 2 173 0 331 163 42 105 chr1 9154596 9154786 -273038878 + (CAA)n Simple_repeat Simple_repeat 2 179 0 225 211 38 53 chr1 9154916 9155049 -273038615 + (CATAA)n Simple_repeat Simple_repeat 2 132 0 2331 69 13 3 chr1 9155194 9155498 -273038166 + AluY SINE Alu 1 307 -4 215 160 60 20 chr1 9155576 9155676 -273037988 + (CAA)n Simple_repeat Simple_repeat 2 105 0 275 211 50 67 chr1 9155693 9155873 -273037791 + (CAA)n Simple_repeat Simple_repeat 2 178 0 232 256 45 51 chr1 9155948 9156124 -273037540 + (CAA)n Simple_repeat Simple_repeat 2 176 0 292 213 20 80 chr1 9156197 9156347 -273037317 + (CAA)n Simple_repeat Simple_repeat 2 142 0 181 200 25 0 chr1 9156716 9156756 -273036908 + L2 LINE L2 2980 3020 -252 264 280 87 29 chr1 9157010 9157045 -273036619 + L1MEd LINE L1 843 875 -5244 1592 140 55 49 chr1 9157045 9157352 -273036312 + AluJb SINE Alu 1 309 -3 264 280 87 29 chr1 9157352 9157523 -273036141 + L1MEd LINE L1 875 1061 -5058 614 288 19 28 chr1 9158298 9158513 -273035151 - MIR SINE MIR -38 224 12 240 299 0 58 chr1 9158741 9158828 -273034836 - Charlie8 DNA MER1_type -2209 208 127 1931 151 0 0 chr1 9158900 9159217 -273034447 + AluJo SINE Alu 1 317 0 2528 207 48 11 chr1 9159227 9159796 -273033868 + L1MB8 LINE L1 5589 6178 0 531 304 86 45 chr1 9160033 9160082 -273033582 + MIR SINE MIR 4 50 -212 1947 122 11 0 chr1 9160082 9160408 -273033256 - AluSx SINE Alu 0 329 1 531 304 86 45 chr1 9160408 9160599 -273033065 + MIR SINE MIR 50 256 -6 511 268 73 0 chr1 9160849 9161013 -273032651 - MER104 DNA MER2_type -4 176 1 604 167 48 8 chr1 9161785 9161911 -273031753 + L1MB7 LINE L1 6035 6165 -19 630 180 50 29 chr1 9161948 9162087 -273031577 + FLAM_A SINE Alu 1 142 0 224 292 0 14 chr1 9162419 9162491 -273031173 - MIR SINE MIR -62 200 130 339 25 0 0 chr1 9163008 9163048 -273030616 + (CAA)n Simple_repeat Simple_repeat 2 41 0 334 219 0 79 chr1 9163945 9164123 -273029541 + (GGGTG)n Simple_repeat Simple_repeat 5 168 0 756 163 23 0 chr1 9165834 9165963 -273027701 - FLAM_A SINE Alu -1 132 1 228 340 10 10 chr1 9166127 9166230 -273027434 + GA-rich Low_complexity Low_complexity 2 104 0 2112 95 7 3 chr1 9168238 9168532 -273025132 + AluSx SINE Alu 1 295 -17 850 258 68 0 chr1 9170074 9170295 -273023369 + MIR SINE MIR 5 240 -22 259 271 90 71 chr1 9170350 9170505 -273023159 - MIR SINE MIR -48 214 57 207 206 0 73 chr1 9172153 9172221 -273021443 + MER5B DNA MER1_type 1 63 -115 184 311 40 0 chr1 9172384 9172458 -273021206 - MER5A DNA MER1_type -78 111 35 326 319 135 12 chr1 9172495 9172658 -273021006 - MIR SINE MIR 0 262 80 1798 122 29 11 chr1 9172782 9173093 -273020571 + AluJb SINE Alu 1 316 0 476 331 6 29 chr1 9173840 9174015 -273019649 + MIR3 SINE MIR 7 177 -31 1920 138 0 0 chr1 9175156 9175447 -273018217 + AluSx SINE Alu 22 312 0 620 194 12 43 chr1 9175447 9175693 -273017971 - MER63 DNA MER1_type -147 915 1 1539 221 192 32 chr1 9175702 9176641 -273017023 + L2 LINE L2 2234 3313 0 689 221 32 100 chr1 9176773 9176949 -273016715 - MIR SINE MIR 0 262 106 2054 117 40 0 chr1 9176949 9177249 -273016415 + AluSx SINE Alu 1 312 0 689 221 32 100 chr1 9177249 9177321 -273016343 - MIR SINE MIR -156 106 31 463 244 306 0 chr1 9177631 9177791 -273015873 + MIR SINE MIR 48 256 -6 1908 110 16 39 chr1 9177793 9178102 -273015562 - AluSx SINE Alu -10 302 1 1834 102 8 8 chr1 9178192 9178457 -273015207 + AluSx SINE Alu 1 265 -47 1689 164 0 4 chr1 9178572 9178852 -273014812 + AluJb SINE Alu 3 281 -31 26 64 0 0 chr1 9178866 9178913 -273014751 + AT_rich Low_complexity Low_complexity 1 47 0 44 70 0 0 chr1 9179325 9179411 -273014253 + GC_rich Low_complexity Low_complexity 1 86 0 30 58 0 14 chr1 9179708 9179732 -273013932 + GC_rich Low_complexity Low_complexity 1 24 -44 208 24 24 71 chr1 9179732 9179774 -273013890 + (CGGGGG)n Simple_repeat Simple_repeat 5 44 0 30 58 0 14 chr1 9179774 9179818 -273013846 + GC_rich Low_complexity Low_complexity 24 68 0 316 265 191 25 chr1 9180152 9180314 -273013350 + MIR SINE MIR 65 253 -9 1999 113 0 0 chr1 9180478 9180790 -273012874 - AluJb SINE Alu 0 340 29 1905 121 13 26 chr1 9181388 9181693 -273011971 + AluSx SINE Alu 1 301 -11 2391 77 3 0 chr1 9181693 9182003 -273011661 + AluSp SINE Alu 1 312 -1 234 170 22 0 chr1 9182657 9182706 -273010958 - MIR SINE MIR -68 140 95 1684 151 3 43 chr1 9182894 9183193 -273010471 - AluJo SINE Alu -13 299 13 813 147 74 165 chr1 9183253 9183633 -273010031 - MLT1E2 LTR MaLR 0 505 191 2494 65 0 0 chr1 9183633 9183943 -273009721 - AluY SINE Alu -1 310 1 813 147 74 165 chr1 9183943 9183970 -273009694 - MLT1E2 LTR MaLR -314 191 163 1908 106 0 0 chr1 9183970 9184225 -273009439 + AluSq SINE Alu 1 255 -58 826 137 0 0 chr1 9184225 9184349 -273009315 + AluSg/x SINE Alu 169 292 -18 524 202 54 8 chr1 9184351 9184480 -273009184 - MLT1E2 LTR MaLR -456 170 36 1296 192 112 0 chr1 9184484 9184760 -273008904 - AluJo SINE Alu 0 312 6 2037 127 0 7 chr1 9184769 9185068 -273008596 - AluSx SINE Alu -13 299 3 2126 92 14 3 chr1 9185164 9185459 -273008205 - AluSx SINE Alu -14 298 1 4055 165 15 82 chr1 9185464 9185847 -273007817 - L1MB8 LINE L1 0 6178 5771 1956 141 17 0 chr1 9185847 9186146 -273007518 - AluSx SINE Alu -8 304 1 4055 165 15 82 chr1 9186146 9186361 -273007303 - L1MB8 LINE L1 -407 5771 5543 1914 127 7 23 chr1 9186361 9186660 -273007004 - AluSx SINE Alu -18 294 1 4055 165 15 82 chr1 9186660 9186803 -273006861 - L1MB8 LINE L1 -635 5543 5392 2361 78 3 7 chr1 9186803 9187111 -273006553 - AluSx SINE Alu -5 307 1 4055 165 15 82 chr1 9187111 9187272 -273006392 - L1MB8 LINE L1 -786 5392 5222 1630 162 0 45 chr1 9187272 9187586 -273006078 - AluJb SINE Alu -12 300 1 4055 165 15 82 chr1 9187586 9187818 -273005846 - L1MB8 LINE L1 -956 5222 5156 2119 125 0 0 chr1 9187818 9188114 -273005550 - AluSq SINE Alu -17 296 1 4055 165 15 82 chr1 9188114 9188337 -273005327 - L1MB8 LINE L1 -1022 5156 4920 236 224 0 0 chr1 9188459 9188508 -273005156 + L2 LINE L2 3221 3269 -3 841 288 105 30 chr1 9189281 9189854 -273003810 - L2 LINE L2 -19 3294 2677 2117 128 0 0 chr1 9189960 9190265 -273003399 + AluSx SINE Alu 1 305 -7 475 176 19 37 chr1 9190266 9190374 -273003290 - MER74A LTR ERVL -10 548 443 2286 94 0 3 chr1 9190376 9190868 -273002796 + AluSc SINE Alu 1 309 0 1064 103 0 22 chr1 9190672 9191215 -273002449 + (GAA)n Simple_repeat Simple_repeat 1 539 0 1783 201 45 21 chr1 9191215 9191639 -273002025 - MER74A LTR ERVL -99 459 26 193 333 0 0 chr1 9191697 9191760 -273001904 - L2 LINE L2 -798 2516 2454 1833 125 71 14 chr1 9191762 9191898 -273001766 + AluSx SINE Alu 1 128 -184 1893 143 3 10 chr1 9191898 9192192 -273001472 + AluSc SINE Alu 1 292 -17 1833 125 71 14 chr1 9192192 9192350 -273001314 + AluSx SINE Alu 128 312 0 2135 95 0 20 chr1 9192900 9193196 -273000468 - AluSx SINE Alu 0 312 23 1870 143 13 23 chr1 9193269 9193577 -273000087 - AluJb SINE Alu -7 305 1 914 142 0 8 chr1 9194138 9194272 -272999392 - FLAM_C SINE Alu 0 133 1 3888 165 46 23 chr1 9194447 9194885 -272998779 + L1MB4 LINE L1 5173 5599 -581 1994 89 55 28 chr1 9194885 9195176 -272998488 + AluSx SINE Alu 1 299 -13 3888 165 46 23 chr1 9195176 9195640 -272998024 + L1MB4 LINE L1 5599 6096 -84 892 151 0 7 chr1 9195652 9195798 -272997866 + AluJb SINE Alu 1 145 -167 2477 62 0 0 chr1 9195799 9196104 -272997560 + AluY SINE Alu 1 305 -6 1688 108 88 0 chr1 9196527 9196798 -272996866 + AluJb SINE Alu 12 304 0 1912 120 68 0 chr1 9196812 9197104 -272996560 + AluSx SINE Alu 1 312 0 2155 117 3 0 chr1 9197648 9197957 -272995707 + AluSx SINE Alu 1 310 -2 2025 84 3 34 chr1 9198232 9198553 -272995111 - AluSx SINE Alu 0 312 1 2017 122 24 0 chr1 9198553 9198847 -272994817 - AluSx SINE Alu -11 301 1 2060 143 7 0 chr1 9199370 9199678 -272993986 - AluSg SINE Alu 0 310 1 1888 143 0 10 chr1 9199678 9199972 -272993692 - AluJb SINE Alu -21 291 1 208 283 0 0 chr1 9200588 9200641 -272993023 + L2 LINE L2 3189 3241 -31 1479 178 52 0 chr1 9200956 9201226 -272992438 + AluJb SINE Alu 7 290 -22 1220 284 28 54 chr1 9201278 9201739 -272991925 + MLT1J LTR MaLR 14 462 -49 586 184 65 30 chr1 9201991 9202011 -272991653 - MER53 DNA DNA -15 174 156 2380 92 0 0 chr1 9202011 9202314 -272991350 - AluSx SINE Alu -9 303 1 586 184 65 30 chr1 9202314 9202461 -272991203 - MER53 DNA DNA -33 156 1 492 274 62 44 chr1 9202718 9202965 -272990699 + MIR SINE MIR 1 250 -12 249 33 0 0 chr1 9203177 9203207 -272990457 + (TTCC)n Simple_repeat Simple_repeat 4 33 0 329 102 20 0 chr1 9203226 9203275 -272990389 + MLT1B LTR MaLR 1 50 -340 2023 169 19 3 chr1 9203336 9203696 -272989968 + MLT1B LTR MaLR 25 390 0 207 313 27 68 chr1 9203741 9203855 -272989809 - L2 LINE L2 0 3272 3164 1805 157 0 41 chr1 9203855 9204031 -272989633 - AluJo SINE Alu -6 306 147 2223 89 3 7 chr1 9204031 9204333 -272989331 - AluSp SINE Alu -12 301 1 1805 157 0 41 chr1 9204333 9204475 -272989189 - AluJo SINE Alu -165 147 1 207 313 27 68 chr1 9204475 9204507 -272989157 - L2 LINE L2 -108 3164 3132 1788 169 3 0 chr1 9205006 9205307 -272988357 + AluSx SINE Alu 1 302 -10 279 292 67 46 chr1 9205399 9205594 -272988070 - L2 LINE L2 -1 3312 3114 2162 100 17 0 chr1 9205605 9205906 -272987758 - AluSp SINE Alu -6 307 2 1989 113 38 3 chr1 9205952 9206245 -272987419 + AluSx SINE Alu 1 303 -9 184 326 0 0 chr1 9206717 9206766 -272986898 + L2 LINE L2 3265 3313 0 2298 88 3 0 chr1 9207398 9207695 -272985969 + AluSp SINE Alu 9 306 -7 844 145 0 8 chr1 9208280 9208411 -272985253 - FLAM_C SINE Alu 0 133 4 636 182 179 23 chr1 9208661 9208851 -272984813 + MIR SINE MIR 1 206 -56 2320 79 7 0 chr1 9208882 9209186 -272984478 + AluSp SINE Alu 1 306 -7 2383 60 0 3 chr1 9209271 9209572 -272984092 + AluY SINE Alu 1 300 -11 1707 197 92 15 chr1 9209653 9210080 -272983584 + MLT1C LTR MaLR 1 467 0 223 212 153 0 chr1 9210231 9210316 -272983348 - MIR3 SINE MIR -45 163 66 400 368 0 28 chr1 9210368 9210550 -272983114 + MIR3 SINE MIR 30 206 -2 252 0 0 0 chr1 9210915 9210943 -272982721 + (CA)n Simple_repeat Simple_repeat 2 29 0 187 31 62 0 chr1 9211542 9211574 -272982090 + T-rich Low_complexity Low_complexity 2 35 0 210 150 0 0 chr1 9212608 9212648 -272981016 + (CAG)n Simple_repeat Simple_repeat 3 42 0 436 72 29 0 chr1 9212660 9212729 -272980935 + (GGA)n Simple_repeat Simple_repeat 1 71 0 197 65 32 0 chr1 9215532 9215563 -272978101 + (CCCG)n Simple_repeat Simple_repeat 1 32 0 200 216 0 20 chr1 9216770 9216821 -272976843 + GA-rich Low_complexity Low_complexity 2 51 0 452 240 40 0 chr1 9217366 9217491 -272976173 - MIR3 SINE MIR -21 187 58 1714 141 0 4 chr1 9218899 9219161 -272974503 - AluJb SINE Alu -18 294 34 1974 139 13 3 chr1 9219186 9219528 -272974136 - AluSx SINE Alu 0 345 1 820 169 0 0 chr1 9219619 9219749 -272973915 + FLAM_C SINE Alu 3 132 -1 817 183 15 0 chr1 9219822 9219959 -272973705 + FLAM_C SINE Alu 2 140 -3 1394 164 30 69 chr1 9220253 9220558 -272973106 + AluJb SINE Alu 1 293 -19 446 33 0 16 chr1 9220558 9220619 -272973045 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 2211 95 6 13 chr1 9221984 9222299 -272971365 - AluSq SINE Alu 0 313 1 1250 157 14 9 chr1 9223041 9223258 -272970406 - LTR26E LTR ERV1 -8 614 397 722 282 177 26 chr1 9223336 9223715 -272969949 - L2 LINE L2 -15 3298 2863 2411 246 46 43 chr1 9223722 9223817 -272969847 - L2 LINE L2 -625 2689 2596 1363 171 57 67 chr1 9223817 9224116 -272969548 + AluJb SINE Alu 1 296 -16 2411 246 46 43 chr1 9224116 9224825 -272968839 - L2 LINE L2 -718 2596 1883 2197 113 0 7 chr1 9225102 9225411 -272968253 - AluSx SINE Alu -5 307 1 421 163 325 0 chr1 9225902 9226025 -272967639 + MER3 DNA MER1_type 41 203 -6 2114 115 0 19 chr1 9226160 9226474 -272967190 + AluSx SINE Alu 1 308 -4 1009 133 66 0 chr1 9226474 9226640 -272967024 + AluSg/x SINE Alu 132 308 -2 421 280 65 60 chr1 9226892 9227101 -272966563 + MIR SINE MIR 34 246 -16 653 171 8 0 chr1 9227919 9228042 -272965622 - L1MB7 LINE L1 -16 6168 6045 28 29 0 0 chr1 9228043 9228078 -272965586 + AT_rich Low_complexity Low_complexity 1 35 0 1344 150 5 0 chr1 9228084 9228297 -272965367 - AluJo SINE Alu -24 288 75 2076 104 21 0 chr1 9228480 9228769 -272964895 + AluSx SINE Alu 1 295 -17 257 0 0 29 chr1 9229546 9229580 -272964084 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 276 272 93 25 chr1 9229679 9229872 -272963792 + MIR SINE MIR 2 197 -31 1941 108 29 55 chr1 9229975 9230282 -272963382 + AluSq SINE Alu 1 299 -14 21 0 0 0 chr1 9231504 9231525 -272962139 + GC_rich Low_complexity Low_complexity 1 21 0 224 209 0 0 chr1 9234050 9234093 -272959571 - L2 LINE L2 0 3272 3230 297 280 118 0 chr1 9234128 9234221 -272959443 - L2 LINE L2 -338 2975 2872 297 322 68 1 chr1 9234493 9234639 -272959025 + MIR SINE MIR 18 169 -67 2069 142 0 0 chr1 9234867 9235176 -272958488 - AluJo SINE Alu -3 309 1 2170 92 7 13 chr1 9236005 9236310 -272957354 + AluSx SINE Alu 1 303 -9 531 287 51 19 chr1 9236529 9236645 -272957019 - MER2 DNA MER2_type 0 345 234 774 167 8 0 chr1 9236645 9236777 -272956887 + FLAM_C SINE Alu 1 133 0 531 287 51 19 chr1 9236777 9236876 -272956788 - MER2 DNA MER2_type -111 234 123 2122 99 3 0 chr1 9236877 9237171 -272956493 + AluSq SINE Alu 1 295 -18 763 143 84 0 chr1 9237173 9237292 -272956372 + AluSg/x SINE Alu 143 271 -39 628 198 25 0 chr1 9237299 9237420 -272956244 - MER2 DNA MER2_type -220 125 2 1393 118 22 18 chr1 9237939 9238168 -272955496 - AluJb SINE Alu -1 311 82 2120 130 0 0 chr1 9238269 9238569 -272955095 + AluSx SINE Alu 1 300 -12 454 183 0 24 chr1 9238569 9238645 -272955019 - FLAM_A SINE Alu -24 118 45 626 286 57 40 chr1 9238865 9239113 -272954551 - MIR SINE MIR -3 259 8 2826 200 43 32 chr1 9239206 9239790 -272953874 - MLT1E LTR MaLR -3 590 1 1989 132 0 0 chr1 9240659 9240970 -272952694 - AluSx SINE Alu 0 312 2 855 114 0 2 chr1 9241000 9241258 -272952406 + AluJ SINE Alu 1 304 -8 294 222 80 115 chr1 9241554 9241784 -272951880 + MLT1C LTR MaLR 99 340 -165 2121 99 20 3 chr1 9241785 9242079 -272951585 + AluSx SINE Alu 1 299 -13 1786 151 3 3 chr1 9242382 9242666 -272950998 - AluJb SINE Alu -18 294 11 284 125 0 0 chr1 9242666 9242706 -272950958 - Alu SINE Alu -262 40 1 688 219 140 79 chr1 9242805 9243194 -272950470 - MLT1C LTR MaLR -41 442 1 2184 89 3 3 chr1 9243582 9243873 -272949791 + AluSx SINE Alu 1 291 -21 2087 132 0 0 chr1 9243927 9244231 -272949433 - AluY SINE Alu -7 304 1 203 322 17 0 chr1 9244424 9244483 -272949181 - L2 LINE L2 -10 3303 3244 2207 103 3 0 chr1 9244879 9245180 -272948484 + AluSx SINE Alu 3 304 -8 895 132 0 0 chr1 9245773 9245909 -272947755 - AluJb SINE Alu -176 136 1 258 105 0 0 chr1 9245935 9245973 -272947691 + (CA)n Simple_repeat Simple_repeat 2 39 0 1735 156 30 7 chr1 9246069 9246364 -272947300 - AluJo SINE Alu -10 302 1 2210 81 7 29 chr1 9246821 9247130 -272946534 - AluSg SINE Alu -8 302 1 2158 94 13 3 chr1 9247142 9247451 -272946213 - AluSx SINE Alu 0 312 1 1480 164 0 82 chr1 9248179 9248326 -272945338 + AluJb SINE Alu 1 108 -204 2257 99 0 3 chr1 9248326 9248628 -272945036 + AluSx SINE Alu 2 302 -10 1480 164 0 82 chr1 9248628 9248810 -272944854 + AluJb SINE Alu 108 303 -9 1066 162 5 79 chr1 9249703 9249864 -272943800 - MER20 DNA MER1_type -4 215 72 2228 118 0 0 chr1 9249864 9250168 -272943496 - AluSx SINE Alu -8 304 1 1066 162 5 79 chr1 9250168 9250222 -272943442 - MER20 DNA MER1_type -147 72 16 972 90 0 0 chr1 9250928 9251061 -272942603 - AluSp SINE Alu -180 133 1 246 128 0 0 chr1 9252486 9252525 -272941139 + (T)n Simple_repeat Simple_repeat 1 39 0 638 281 50 15 chr1 9253512 9253595 -272940069 - MLT1L LTR MaLR 0 615 536 1596 170 23 13 chr1 9253595 9253720 -272939944 + AluJo SINE Alu 1 123 -189 183 42 0 0 chr1 9253720 9253744 -272939920 + (CAAAC)n Simple_repeat Simple_repeat 1 24 0 1596 170 23 13 chr1 9253744 9253918 -272939746 + AluJo SINE Alu 123 303 -9 638 281 50 15 chr1 9253918 9254033 -272939631 - MLT1L LTR MaLR -79 536 410 476 238 57 0 chr1 9254073 9254195 -272939469 - MLT1L LTR MaLR -324 291 163 259 284 12 12 chr1 9254238 9254319 -272939345 - MLT1L LTR MaLR -534 81 1 377 370 29 0 chr1 9254341 9254479 -272939185 + L1MC4 LINE L1 6567 6708 -1334 2174 101 3 3 chr1 9254500 9254796 -272938868 + AluSq SINE Alu 3 298 -15 180 77 0 0 chr1 9254913 9254939 -272938725 + (T)n Simple_repeat Simple_repeat 1 26 0 2196 99 3 10 chr1 9255465 9255778 -272937886 - AluSx SINE Alu -1 311 1 1971 115 0 17 chr1 9256019 9256347 -272937317 - AluSq SINE Alu 0 323 1 1397 179 81 4 chr1 9256349 9256622 -272937042 - AluJb SINE Alu -18 294 1 1988 147 0 6 chr1 9257801 9258115 -272935549 - AluSx SINE Alu 0 312 1 363 169 0 0 chr1 9259536 9259595 -272934069 - AluJ/FLAM SINE Alu -233 69 11 885 137 82 0 chr1 9259601 9259747 -272933917 - FRAM SINE Alu -11 165 8 265 298 46 53 chr1 9260513 9260644 -272933020 + MER5A DNA MER1_type 46 175 -14 1954 110 30 43 chr1 9260721 9261022 -272932642 - AluSx SINE Alu -15 297 1 841 170 0 0 chr1 9261435 9261576 -272932088 + FLAM_C SINE Alu 1 141 -2 1660 204 28 26 chr1 9261616 9262004 -272931660 + MLT2C1 LTR ERVL 1 389 -8 285 270 0 20 chr1 9462566 9462666 -272730998 + MLT1H LTR MaLR 368 465 -84 3503 85 4 2 chr1 9462917 9463388 -272730276 + LTR8 LTR ERV1 1 472 -219 8223 42 4 1 chr1 9463488 9464551 -272729113 - L1P LINE L1 -794 5352 4287 696 332 174 31 chr1 9465046 9465863 -272727801 + L3 LINE CR1 211 1144 -433 354 329 55 24 chr1 9466172 9466336 -272727328 - L1M LINE L1 -2385 5423 5255 335 264 127 10 chr1 9466558 9466755 -272726909 - L1M4 LINE L1 -1437 4709 4490 2028 128 0 24 chr1 9467245 9467541 -272726123 + AluSx SINE Alu 1 289 -23 253 191 191 0 chr1 9468369 9468453 -272725211 + MIR3 SINE MIR 108 207 -1 410 179 51 90 chr1 9471100 9471256 -272722408 - MER97a DNA MER1_type? -744 150 1 2230 121 52 100 chr1 9471422 9471884 -272721780 + Tigger3(Golem) DNA MER2_type 2578 3017 -12 266 203 34 0 chr1 9471894 9471953 -272721711 + LTR67 LTR ERVL 114 174 -383 1440 151 95 48 chr1 9471962 9472320 -272721344 - THE1C LTR MaLR 0 375 1 286 228 43 11 chr1 9472495 9472587 -272721077 + LTR67 LTR ERVL 439 533 -24 1694 117 117 0 chr1 9473879 9474009 -272719655 + AluSx SINE Alu 1 114 -198 1992 153 0 0 chr1 9474009 9474297 -272719367 + AluSg SINE Alu 9 296 -14 1694 117 117 0 chr1 9474297 9474415 -272719249 + AluSx SINE Alu 114 278 -34 660 195 17 0 chr1 9474419 9474593 -272719071 + GA-rich Low_complexity Low_complexity 4 180 0 273 167 0 21 chr1 9474721 9474769 -272718895 - Alu SINE Alu -253 48 2 2172 122 0 20 chr1 9474895 9475198 -272718466 - AluSx SINE Alu -15 297 1 1001 132 38 0 chr1 9475945 9476104 -272717560 - Tigger4(Zombi) DNA MER2_type -2566 165 1 2385 93 3 0 chr1 9476484 9476786 -272716878 - AluSp SINE Alu -10 303 1 2325 102 0 0 chr1 9477768 9478061 -272715603 + AluSx SINE Alu 1 293 -19 283 218 0 0 chr1 9478219 9478274 -272715390 + Tigger5 DNA MER2_type 3 57 -2266 822 168 0 0 chr1 9478341 9478466 -272715198 + FLAM_C SINE Alu 2 126 -7 2078 136 0 17 chr1 9478481 9478617 -272715047 + AluSx SINE Alu 1 138 -164 2348 94 0 16 chr1 9478617 9478754 -272714910 + AluSq SINE Alu 1 139 -174 2363 112 0 0 chr1 9478754 9479066 -272714598 + AluSq SINE Alu 1 312 -1 2348 94 0 16 chr1 9479066 9479237 -272714427 + AluSq SINE Alu 139 304 -9 2078 136 0 17 chr1 9479237 9479402 -272714262 + AluSx SINE Alu 138 297 -5 785 203 26 0 chr1 9479409 9479562 -272714102 + FRAM SINE Alu 5 161 -5 1173 208 32 70 chr1 9480037 9480350 -272713314 - AluSx SINE Alu 0 302 2 792 180 66 28 chr1 9480520 9480731 -272712933 - MER20 DNA MER1_type 0 219 1 1859 136 3 42 chr1 9480937 9481245 -272712419 + AluJb SINE Alu 1 296 -16 2463 88 0 19 chr1 9481403 9481721 -272711943 + AluSq SINE Alu 1 312 -1 257 343 59 29 chr1 9482280 9482382 -272711282 - L2 LINE L2 -42 3271 3167 2479 49 3 0 chr1 9482446 9482732 -272710932 - AluY SINE Alu -11 300 14 3317 145 35 88 chr1 9482762 9483017 -272710647 - L1MB3 LINE L1 0 6183 5916 1953 162 0 3 chr1 9483017 9483320 -272710344 + AluJb SINE Alu 1 302 -10 3317 145 35 88 chr1 9483320 9483333 -272710331 - L1MB3 LINE L1 -267 5916 5904 2123 128 17 0 chr1 9483333 9483621 -272710043 + AluSx SINE Alu 1 293 -19 2542 62 0 3 chr1 9483630 9483938 -272709726 + AluY SINE Alu 1 307 -4 3317 145 35 88 chr1 9483938 9484430 -272709234 - L1MB3 LINE L1 -287 5896 5453 348 266 66 49 chr1 9484478 9484704 -272708960 - L1MC5 LINE L1 -50 7911 7682 1964 162 3 3 chr1 9484741 9485049 -272708615 + AluJb SINE Alu 1 308 -4 225 188 47 47 chr1 9485049 9485125 -272708539 - L1MC5 LINE L1 -272 7689 7611 823 249 80 10 chr1 9485286 9485587 -272708077 - L1M4 LINE L1 -2096 4050 3729 2196 54 4 36 chr1 9485896 9486174 -272707490 + AluY SINE Alu 1 269 -42 2460 70 3 3 chr1 9486390 9486688 -272706976 - AluSp SINE Alu -15 298 1 2054 148 0 10 chr1 9487064 9487369 -272706295 - AluJb SINE Alu -10 302 1 2342 109 3 0 chr1 9487377 9487688 -272705976 - AluSx SINE Alu 0 312 1 264 266 43 53 chr1 9488216 9488310 -272705354 + MIR3 SINE MIR 4 96 -112 582 229 70 75 chr1 9488366 9488482 -272705182 + MIR SINE MIR 46 161 -101 2243 79 11 4 chr1 9488482 9488761 -272704903 + AluSq SINE Alu 1 281 -32 216 0 0 0 chr1 9488764 9488788 -272704876 + (TAA)n Simple_repeat Simple_repeat 3 26 0 582 229 70 75 chr1 9488788 9488868 -272704796 + MIR SINE MIR 163 245 -17 2499 73 0 13 chr1 9488938 9489252 -272704412 + AluY SINE Alu 1 310 -1 2331 112 6 6 chr1 9489257 9489570 -272704094 + AluSp SINE Alu 1 313 0 2164 101 7 32 chr1 9489585 9489893 -272703771 + AluSx SINE Alu 5 304 -8 251 313 94 16 chr1 9489975 9490103 -272703561 - MIR SINE MIR -46 216 79 1864 158 0 24 chr1 9490103 9490400 -272703264 + AluJo SINE Alu 1 290 -22 2199 124 0 0 chr1 9490763 9491053 -272702611 - AluSx SINE Alu -22 290 1 623 243 29 0 chr1 9491060 9491200 -272702464 - MIR SINE MIR -105 157 14 451 219 187 0 chr1 9491545 9491668 -272701996 + MIR SINE MIR 57 202 -60 2278 125 3 0 chr1 9491668 9491973 -272701691 + AluSx SINE Alu 1 306 -6 303 197 127 0 chr1 9494108 9494179 -272699485 - MIR SINE MIR -90 172 93 336 282 168 24 chr1 9495146 9495355 -272698309 + MIR SINE MIR 12 250 -12 288 304 112 50 chr1 9496311 9496344 -272697320 - MIR SINE MIR -76 186 156 2132 137 0 3 chr1 9496344 9496644 -272697020 + AluSx SINE Alu 1 299 -13 288 304 112 50 chr1 9496644 9496771 -272696893 - MIR SINE MIR -106 156 16 180 194 97 48 chr1 9497384 9497446 -272696218 + MIR SINE MIR 14 78 -184 1847 96 65 55 chr1 9497498 9497646 -272696018 + AluSx SINE Alu 1 146 -166 1825 100 0 41 chr1 9497646 9497915 -272695749 + AluSx SINE Alu 44 301 -11 1847 96 65 55 chr1 9497915 9498059 -272695605 + AluSx SINE Alu 146 296 -16 2573 59 10 0 chr1 9498075 9498378 -272695286 + AluY SINE Alu 1 306 -5 739 167 9 0 chr1 9498378 9498492 -272695172 - AluJb SINE Alu -196 116 2 746 159 61 12 chr1 9498568 9498731 -272694933 - L1MB7 LINE L1 -10 6174 6004 2280 107 0 0 chr1 9501567 9501858 -272691806 + AluSx SINE Alu 1 291 -21 525 284 98 42 chr1 9502073 9502337 -272691327 + L2 LINE L2 3035 3313 0 2201 124 3 0 chr1 9502455 9502761 -272690903 - AluSx SINE Alu -5 307 1 875 175 0 0 chr1 9502825 9502968 -272690696 + FLAM_C SINE Alu 1 143 0 192 277 0 46 chr1 9503019 9503084 -272690580 + L2 LINE L2 604 665 -2649 2658 44 0 25 chr1 9503905 9504221 -272689443 + AluY SINE Alu 1 308 -3 2450 100 0 0 chr1 9504372 9504681 -272688983 + AluSc SINE Alu 1 309 0 2063 147 0 10 chr1 9504689 9504995 -272688669 + AluJb SINE Alu 1 303 -9 2460 70 3 3 chr1 9505371 9505669 -272687995 + AluSp SINE Alu 1 298 -15 719 205 0 0 chr1 9505796 9505913 -272687751 - FLAM_C SINE Alu -25 118 2 2289 96 3 3 chr1 9506052 9506344 -272687320 + AluSp SINE Alu 1 292 -21 437 136 0 0 chr1 9506355 9506421 -272687243 + Alu SINE Alu 236 301 -11 3440 143 23 54 chr1 9506457 9507054 -272686610 - L1MB7 LINE L1 0 6184 5609 2245 103 3 0 chr1 9507054 9507344 -272686320 - AluSx SINE Alu -21 291 1 3440 143 23 54 chr1 9507344 9507411 -272686253 - L1MB7 LINE L1 -575 5609 5541 1769 165 38 3 chr1 9508078 9508369 -272685295 - AluJo SINE Alu -11 301 1 1548 187 0 15 chr1 9508607 9508869 -272684795 - AluJb SINE Alu -54 258 1 2347 92 0 10 chr1 9508874 9509179 -272684485 - AluY SINE Alu -9 302 1 421 147 27 0 chr1 9509388 9509463 -272684201 - MER45A DNA AcHobo 0 178 102 2020 161 0 3 chr1 9509470 9509781 -272683883 - AluSx SINE Alu -2 310 1 2142 124 3 3 chr1 9509815 9510114 -272683550 - AluSx SINE Alu -13 299 1 2405 91 3 7 chr1 9510123 9510432 -272683232 - AluSp SINE Alu -5 308 1 2256 119 0 0 chr1 9510839 9511141 -272682523 - AluY SINE Alu -9 302 1 230 26 26 26 chr1 9512176 9512215 -272681449 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 2168 110 0 0 chr1 9512215 9512488 -272681176 - AluSx SINE Alu -24 288 13 2124 118 3 0 chr1 9512500 9512788 -272680876 - AluSx SINE Alu -13 299 11 222 37 0 0 chr1 9512792 9512819 -272680845 + (CCTG)n Simple_repeat Simple_repeat 2 28 0 1305 123 29 84 chr1 9513116 9513295 -272680369 + MLT1B LTR MaLR 4 211 -256 2488 77 3 0 chr1 9513295 9513594 -272680070 + AluY SINE Alu 2 301 -10 1305 123 29 84 chr1 9513594 9513725 -272679939 + MLT1B LTR MaLR 211 348 -119 649 142 11 40 chr1 9513794 9513970 -272679694 + GA-rich Low_complexity Low_complexity 2 172 0 2123 135 0 19 chr1 9513977 9514295 -272679369 + AluSx SINE Alu 1 312 0 2482 77 0 6 chr1 9514300 9514613 -272679051 + AluY SINE Alu 1 311 0 346 129 65 0 chr1 9514638 9514700 -272678964 - AluJo SINE Alu 0 302 237 932 181 139 0 chr1 9514701 9514867 -272678797 - AluJo SINE Alu -123 189 1 698 175 0 0 chr1 9514869 9514983 -272678681 + MLT1B LTR MaLR 275 388 -2 286 270 191 15 chr1 9515398 9515434 -272678230 - MIR SINE MIR -63 145 117 2099 148 0 3 chr1 9515434 9515731 -272677933 - AluJo SINE Alu -16 296 1 286 270 191 15 chr1 9515731 9515857 -272677807 - MIR SINE MIR -91 117 14 564 103 0 41 chr1 9515909 9516006 -272677658 + AluSq SINE Alu 1 93 -219 768 266 152 36 chr1 9516577 9516777 -272676887 - L2 LINE L2 0 3313 3138 2053 109 0 4 chr1 9516777 9517044 -272676620 + AluSx SINE Alu 1 266 -46 768 266 152 36 chr1 9517044 9517290 -272676374 - L2 LINE L2 -175 3138 2815 713 213 18 7 chr1 9517539 9517817 -272675847 - MLT1I LTR MaLR -7 402 1 210 71 0 0 chr1 9519865 9519893 -272673771 + (TCC)n Simple_repeat Simple_repeat 3 30 0 306 326 123 9 chr1 9520446 9520673 -272672991 - MIR SINE MIR 0 262 10 1742 98 0 0 chr1 9520952 9521166 -272672498 + AluSq SINE Alu 88 301 -12 258 116 0 0 chr1 9521798 9521841 -272671823 + (GA)n Simple_repeat Simple_repeat 2 44 0 469 244 85 18 chr1 9522673 9522837 -272670827 + L3 LINE CR1 1337 1511 -66 261 234 0 16 chr1 9525897 9525961 -272667703 + (GGGTG)n Simple_repeat Simple_repeat 1 63 0 2342 115 0 6 chr1 9526679 9526991 -272666673 - AluSg SINE Alu 0 310 1 5374 206 83 27 chr1 9529127 9529411 -272664253 + L1M4 LINE L1 3657 3923 -2223 2313 88 27 3 chr1 9529411 9529706 -272663958 + AluSq SINE Alu 1 302 -11 5374 206 83 27 chr1 9529706 9530002 -272663662 + L1M4 LINE L1 3923 4201 -1945 2098 150 0 0 chr1 9530002 9530296 -272663368 - AluJb SINE Alu -18 294 1 5374 206 83 27 chr1 9530296 9531046 -272662618 + L1M4 LINE L1 4201 5089 -1057 1569 175 6 48 chr1 9531046 9531228 -272662436 - AluJo SINE Alu -9 303 138 1957 122 0 7 chr1 9531228 9531498 -272662166 + AluSx SINE Alu 45 312 0 1569 175 6 48 chr1 9531498 9531630 -272662034 - AluJo SINE Alu -174 138 2 5374 206 83 27 chr1 9531630 9531831 -272661833 + L1M4 LINE L1 5089 5277 -869 1424 90 0 5 chr1 9531831 9532019 -272661645 - AluSg/x SINE Alu -10 302 116 645 208 87 63 chr1 9533024 9533231 -272660433 - L2 LINE L2 0 3313 3102 2403 55 41 3 chr1 9533249 9533541 -272660123 + AluY SINE Alu 1 303 -8 2264 97 0 0 chr1 9533552 9533831 -272659833 + AluSg SINE Alu 1 279 -31 880 266 38 26 chr1 9533860 9534127 -272659537 - L2 LINE L2 -495 2819 2550 2279 106 0 3 chr1 9534436 9534739 -272658925 + AluSx SINE Alu 1 302 -10 206 318 45 0 chr1 9534792 9534858 -272658806 - MIR3 SINE MIR -11 197 129 227 385 9 0 chr1 9534967 9535076 -272658588 + L2 LINE L2 3194 3303 -10 2404 99 0 3 chr1 9535328 9535632 -272658032 - AluSq SINE Alu -10 303 1 777 285 61 4 chr1 9535635 9535881 -272657783 + MIR SINE MIR 3 262 0 271 247 116 41 chr1 9535875 9536021 -272657643 + L2 LINE L2 3155 3311 -2 * 465 285 153 65 chr1 9536003 9536178 -272657486 - L2 LINE L2 -4 3309 3151 2467 56 0 26 chr1 9536178 9536481 -272657183 + AluY SINE Alu 1 295 -16 465 285 153 65 chr1 9536481 9536705 -272656959 - L2 LINE L2 -162 3151 2875 624 269 71 10 chr1 9537838 9538035 -272655629 - MIR SINE MIR -52 210 2 380 214 60 34 chr1 9538136 9538253 -272655411 + MIR SINE MIR 50 169 -93 274 388 0 0 chr1 9538735 9538838 -272654826 - L2 LINE L2 0 3272 3170 2477 86 0 0 chr1 9538838 9539141 -272654523 + AluY SINE Alu 1 303 -8 1557 154 39 27 chr1 9541522 9541782 -272651882 - AluJb SINE Alu -49 263 1 2155 121 17 0 chr1 9541815 9542112 -272651552 - AluSx SINE Alu -10 302 1 258 32 0 0 chr1 9542113 9542144 -272651520 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 2109 112 4 4 chr1 9542144 9542422 -272651242 - AluSc SINE Alu -28 281 4 2456 88 0 0 chr1 9542425 9542730 -272650934 - AluSx SINE Alu -7 305 1 340 182 76 0 chr1 9542769 9542835 -272650829 - MER2 DNA MER2_type -1 344 274 499 110 0 0 chr1 9542835 9542917 -272650747 + L1PB1 LINE L1 6069 6150 -1 21 82 0 0 chr1 9542917 9542966 -272650698 + AT_rich Low_complexity Low_complexity 1 49 0 1271 135 19 5 chr1 9543016 9543223 -272650441 - MER2 DNA MER2_type -135 210 1 514 277 55 25 chr1 9543226 9543355 -272650309 - L1M4 LINE L1 -812 5334 5195 2198 128 0 0 chr1 9543355 9543660 -272650004 - AluSc SINE Alu -4 305 1 514 277 55 25 chr1 9543660 9543732 -272649932 - L1M4 LINE L1 -951 5195 5127 2254 101 16 10 chr1 9543757 9544065 -272649599 - AluSg SINE Alu 0 310 1 1414 175 15 94 chr1 9544068 9544399 -272649265 - AluJo SINE Alu -7 305 1 2590 68 0 0 chr1 9544421 9544731 -272648933 - AluY SINE Alu -1 310 1 2156 103 3 29 chr1 9544734 9544911 -272648753 - AluSg SINE Alu -6 304 137 2366 108 0 0 chr1 9544911 9545217 -272648447 - AluSg SINE Alu -4 306 1 2156 103 3 29 chr1 9545217 9545351 -272648313 - AluSg SINE Alu -173 137 1 1074 103 0 0 chr1 9545351 9545487 -272648177 - AluSq/x SINE Alu -177 136 1 652 283 123 24 chr1 9545588 9545970 -272647694 + L1MC4 LINE L1 7356 7775 -267 1794 142 17 30 chr1 9545976 9546107 -272647557 + AluSx SINE Alu 1 132 -180 2320 88 3 10 chr1 9546107 9546403 -272647261 + AluSg SINE Alu 1 294 -16 2026 138 10 0 chr1 9546406 9546695 -272646969 + AluSx SINE Alu 1 292 -20 2421 90 3 0 chr1 9546697 9546998 -272646666 + AluY SINE Alu 1 302 -9 1794 142 17 30 chr1 9546998 9547155 -272646509 + AluSx SINE Alu 135 292 -20 1522 168 0 0 chr1 9547155 9547381 -272646283 + AluJb SINE Alu 80 305 -7 1081 173 0 0 chr1 9547383 9547556 -272646108 + AluJb SINE Alu 136 308 -4 655 252 53 68 chr1 9547566 9547832 -272645832 + L1MC4 LINE L1 7781 8042 0 1143 129 12 12 chr1 9549292 9549463 -272644201 - AluJo/FRAM SINE Alu -9 303 133 2604 50 0 0 chr1 9549464 9549761 -272643903 - AluY SINE Alu -12 299 3 357 161 0 0 chr1 9549799 9549855 -272643809 + AluS SINE Alu 2 57 -243 701 138 124 83 chr1 9549955 9550055 -272643609 + L1M4 LINE L1 3543 3637 -2509 2357 88 0 3 chr1 9550055 9550351 -272643313 - AluSp SINE Alu -18 295 1 701 138 124 83 chr1 9550351 9550467 -272643197 + L1M4 LINE L1 3637 3768 -2378 892 258 28 14 chr1 9550484 9550697 -272642967 - MIR SINE MIR -44 218 3 275 349 77 26 chr1 9550715 9550910 -272642754 + L3 LINE CR1 1371 1575 -2 279 282 0 0 chr1 9551217 9551288 -272642376 + MIR3 SINE MIR 124 194 -14 2129 136 7 10 chr1 9551309 9551618 -272642046 - AluJb SINE Alu -4 308 1 2244 124 3 0 chr1 9552016 9552315 -272641349 + AluSx SINE Alu 1 300 -12 2532 57 0 7 chr1 9552576 9552877 -272640787 + AluSc SINE Alu 1 299 -10 1696 170 47 0 chr1 9553061 9553338 -272640326 + AluJb SINE Alu 4 293 -19 2217 107 13 0 chr1 9553338 9553637 -272640027 + AluSg SINE Alu 1 303 -7 1287 148 106 68 chr1 9553881 9554080 -272639584 + Charlie1 DNA MER1_type 2345 2535 -226 2429 103 0 0 chr1 9554080 9554382 -272639282 + AluSx SINE Alu 1 302 -10 1287 148 106 68 chr1 9554382 9554503 -272639161 + Charlie1 DNA MER1_type 2535 2685 -76 2012 131 13 45 chr1 9554503 9554817 -272638847 + AluSq SINE Alu 1 304 -9 1287 148 106 68 chr1 9554817 9554893 -272638771 + Charlie1 DNA MER1_type 2685 2757 -4 2621 74 0 0 chr1 9555092 9555403 -272638261 + AluY SINE Alu 1 311 0 346 143 86 0 chr1 9555637 9555707 -272637957 - MER103 DNA DNA -82 84 9 2228 119 3 7 chr1 9558500 9558802 -272634862 - AluSx SINE Alu -6 306 6 276 170 0 19 chr1 9559129 9559182 -272634482 + AluJb SINE Alu 85 136 -166 2439 93 0 0 chr1 9559182 9559492 -272634172 + AluY SINE Alu 1 310 -1 1079 76 0 0 chr1 9559650 9559781 -272633883 + AluSg1 SINE Alu 1 131 -178 2261 120 3 0 chr1 9559784 9560092 -272633572 + AluSx SINE Alu 1 309 -3 22 0 0 0 chr1 9560112 9560134 -272633530 + AT_rich Low_complexity Low_complexity 1 22 0 668 139 0 0 chr1 9560207 9560315 -272633349 + FLAM_A SINE Alu 35 142 0 1985 131 48 3 chr1 9560326 9560617 -272633047 + AluSx SINE Alu 1 304 -8 2242 119 0 3 chr1 9561728 9562030 -272631634 + AluSx SINE Alu 1 301 -11 2062 115 0 36 chr1 9562030 9562144 -272631520 + AluSc SINE Alu 1 118 -191 2342 74 0 27 chr1 9562144 9562441 -272631223 + AluSc SINE Alu 1 289 -20 2062 115 0 36 chr1 9562441 9562631 -272631033 + AluSc SINE Alu 118 294 -15 1767 153 0 80 chr1 9562775 9563101 -272630563 + AluJb SINE Alu 1 300 -12 1751 148 3 68 chr1 9563485 9563615 -272630049 + AluSx SINE Alu 7 144 -168 2387 89 3 3 chr1 9563615 9563917 -272629747 + AluSx SINE Alu 1 302 -10 1751 148 3 68 chr1 9563917 9564110 -272629554 + AluSx SINE Alu 144 309 -3 965 154 49 6 chr1 9564110 9564272 -272629392 + AluSq SINE Alu 134 302 -11 2484 46 0 0 chr1 9564444 9564766 -272628898 - AluY SINE Alu 0 322 1 201 158 0 0 chr1 9564955 9564993 -272628671 + A-rich Low_complexity Low_complexity 1 38 0 240 127 0 175 chr1 9564993 9565056 -272628608 + MLT1H LTR MaLR 498 549 0 574 346 72 33 chr1 9565059 9565663 -272628001 + L2 LINE L2 2650 3270 -2 1045 175 0 0 chr1 9566024 9566190 -272627474 + AluJb SINE Alu 134 299 -13 2311 106 6 3 chr1 9566232 9566543 -272627121 + AluSx SINE Alu 1 312 0 327 146 0 0 chr1 9566927 9566982 -272626682 + (TC)n Simple_repeat Simple_repeat 2 56 0 2183 90 11 4 chr1 9567479 9567781 -272625883 - AluSg SINE Alu 0 304 1 29 0 0 0 chr1 9567783 9567812 -272625852 + AT_rich Low_complexity Low_complexity 1 29 0 1325 134 15 0 chr1 9567832 9568034 -272625630 - AluSg/x SINE Alu -3 309 105 1243 138 5 5 chr1 9568140 9568329 -272625335 + AluSg/x SINE Alu 112 300 -12 1355 191 7 28 chr1 9569370 9569488 -272624176 + AluJb SINE Alu 21 140 -172 2201 120 0 13 chr1 9569488 9569788 -272623876 + AluSx SINE Alu 1 296 -16 1355 191 7 28 chr1 9569788 9569952 -272623712 + AluJb SINE Alu 140 297 -15 2347 109 6 3 chr1 9570054 9570365 -272623299 + AluSx SINE Alu 1 312 0 2197 113 3 3 chr1 9570427 9570720 -272622944 + AluSx SINE Alu 7 299 -13 967 320 106 18 chr1 9571076 9571632 -272622032 - L2 LINE L2 -338 2976 2372 2263 62 11 0 chr1 9571637 9571913 -272621751 - AluSp SINE Alu -9 304 26 1394 158 26 15 chr1 9572013 9572279 -272621385 + L1MB7 LINE L1 5742 6010 -174 2132 103 0 23 chr1 9572321 9572650 -272621014 + AluY SINE Alu 1 311 0 642 162 80 32 chr1 9572667 9572681 -272620983 + L1M4 LINE L1 5411 5423 -745 2383 78 0 36 chr1 9572681 9572990 -272620674 + AluY SINE Alu 1 298 -13 2041 110 0 38 chr1 9572990 9573309 -272620355 + AluSx SINE Alu 1 308 0 642 162 80 32 chr1 9573309 9573446 -272620218 + L1M4 LINE L1 5422 5566 -602 1323 305 106 24 chr1 9573446 9574264 -272619400 + L2 LINE L2 2375 3278 -35 299 240 211 10 chr1 9574271 9574375 -272619289 - MIR SINE MIR -62 146 22 2151 104 0 77 chr1 9575791 9576128 -272617536 + AluSx SINE Alu 1 311 -1 306 214 29 68 chr1 9577263 9577366 -272616298 + MIR SINE MIR 45 143 -65 832 128 8 0 chr1 9577749 9577866 -272615798 - FLAM_C SINE Alu -15 118 1 454 280 63 46 chr1 9577878 9578053 -272615611 - MER5A DNA MER1_type -6 183 6 2504 58 0 0 chr1 9579819 9580111 -272613553 - AluY SINE Alu -19 292 1 2286 121 0 0 chr1 9580430 9580728 -272612936 + AluSx SINE Alu 1 298 -14 2553 70 0 13 chr1 9580802 9581117 -272612547 + AluY SINE Alu 1 311 0 233 317 80 66 chr1 9581810 9581895 -272611769 - L2 LINE L2 -506 2808 2726 2061 113 49 0 chr1 9581895 9582179 -272611485 + AluSx SINE Alu 1 298 -14 233 317 80 66 chr1 9582179 9582443 -272611221 - L2 LINE L2 -588 2726 2454 2026 148 0 26 chr1 9584105 9584415 -272609249 - AluSx SINE Alu -9 303 2 2061 131 0 25 chr1 9584466 9584780 -272608884 - AluJo SINE Alu -6 306 1 342 120 0 0 chr1 9584844 9584919 -272608745 - Alu SINE Alu 0 307 233 1180 124 22 16 chr1 9584919 9585104 -272608560 - AluSp SINE Alu -127 186 1 1132 124 0 30 chr1 9585106 9585297 -272608367 - AluSg/x SINE Alu 0 306 121 2302 99 0 34 chr1 9585309 9585631 -272608033 - AluY SINE Alu 0 311 1 1567 213 17 15 chr1 9585634 9586098 -272607566 - L1M4 LINE L1 -2803 3343 2879 2353 96 0 3 chr1 9586105 9586407 -272607257 - AluSc SINE Alu -7 302 2 2519 66 0 0 chr1 9586408 9586709 -272606955 - AluY SINE Alu -10 301 1 1419 141 52 83 chr1 9586709 9586874 -272606790 - L1MCa LINE L1 -6090 336 184 1723 174 3 10 chr1 9586874 9587172 -272606492 - AluJb SINE Alu -16 296 1 1419 141 52 83 chr1 9587172 9587333 -272606331 - L1MCa LINE L1 -6242 184 20 2413 165 44 42 chr1 9587342 9587868 -272605796 - L1MB5 LINE L1 -41 6133 5607 365 165 0 25 chr1 9587885 9587964 -272605700 + C-rich Low_complexity Low_complexity 1 77 0 1771 102 0 17 chr1 9587973 9588209 -272605455 - AluSx SINE Alu -32 280 49 272 197 132 13 chr1 9588209 9588285 -272605379 - L1MB5 LINE L1 -555 5619 5535 203 274 8 65 chr1 9588314 9588411 -272605253 - L3 LINE CR1 -340 1237 1147 1615 177 13 33 chr1 9588411 9588716 -272604948 - AluJo SINE Alu -13 299 1 203 274 8 65 chr1 9588716 9588742 -272604922 - L3 LINE CR1 -430 1147 1121 360 200 32 42 chr1 9588771 9588866 -272604798 - FLAM_A SINE Alu -4 129 36 518 334 167 43 chr1 9588982 9589363 -272604301 - L3 LINE CR1 -608 969 518 2462 55 3 29 chr1 9589363 9589673 -272603991 - AluY SINE Alu -9 302 1 518 334 167 43 chr1 9589673 9589758 -272603906 - L3 LINE CR1 -1059 518 445 2124 114 20 3 chr1 9589778 9590084 -272603580 - AluSx SINE Alu -1 311 1 1806 143 7 36 chr1 9590089 9590396 -272603268 - AluJb SINE Alu -14 298 1 2468 81 0 0 chr1 9590602 9590900 -272602764 + AluSp SINE Alu 1 298 -15 2066 142 0 0 chr1 9591459 9591747 -272601917 + AluSx SINE Alu 1 288 -24 2363 94 0 3 chr1 9592755 9593052 -272600612 + AluSx SINE Alu 1 296 -16 213 65 0 0 chr1 9593845 9593876 -272599788 + (TTG)n Simple_repeat Simple_repeat 2 32 0 758 127 8 34 chr1 9593883 9594001 -272599663 - AluSg/x SINE Alu -28 282 168 228 235 26 52 chr1 9594009 9594124 -272599540 - AluSp SINE Alu -108 195 84 2196 102 14 0 chr1 9594541 9594824 -272598840 + AluSp SINE Alu 3 289 -24 316 182 0 4 chr1 9595980 9596050 -272597614 + FLAM_A SINE Alu 1 52 -80 912 126 0 0 chr1 9596100 9596227 -272597437 - FLAM_C SINE Alu -16 127 1 1097 174 0 0 chr1 9596293 9596471 -272597193 - FRAM SINE Alu -1 175 1 650 310 92 38 chr1 9596609 9596900 -272596764 - MARNA DNA Mariner -59 527 253 2220 98 10 26 chr1 9596900 9597206 -272596458 - AluSg SINE Alu -9 301 1 2402 104 3 0 chr1 9597208 9597517 -272596147 - AluSq SINE Alu -3 310 1 650 310 92 38 chr1 9597517 9597593 -272596071 - MARNA DNA Mariner -333 253 137 2119 125 0 0 chr1 9597829 9598138 -272595526 + AluSg SINE Alu 1 309 0 1659 95 151 0 chr1 9598976 9599228 -272594436 + AluSg SINE Alu 1 290 -20 2182 127 3 0 chr1 9599238 9599537 -272594127 + AluSp SINE Alu 1 300 -13 2232 131 0 0 chr1 9599537 9599835 -272593829 + AluSg SINE Alu 1 298 -12 2278 116 0 3 chr1 9599844 9600146 -272593518 + AluSx SINE Alu 1 301 -11 1743 146 0 4 chr1 9600146 9600405 -272593259 + AluSx SINE Alu 50 308 -4 2194 112 3 37 chr1 9600933 9601136 -272592528 - AluSq SINE Alu -2 311 122 2539 68 3 7 chr1 9601136 9601446 -272592218 - AluSx SINE Alu -3 309 1 2194 112 3 37 chr1 9601446 9601564 -272592100 - AluSq SINE Alu -191 122 1 2324 102 0 0 chr1 9601623 9601916 -272591748 - AluSc SINE Alu -16 293 1 467 225 0 115 chr1 9601995 9602058 -272591606 + HsTC2 DNA Tc2 1558 1627 -271 1694 175 28 3 chr1 9602058 9602343 -272591321 + AluJb SINE Alu 1 292 -20 467 225 0 115 chr1 9602343 9602461 -272591203 + HsTC2 DNA Tc2 1627 1718 -180 2461 94 0 0 chr1 9602461 9602769 -272590895 + AluSx SINE Alu 1 308 -4 1261 116 0 22 chr1 9602811 9602826 -272590838 + AluSc SINE Alu 120 134 -175 2386 98 3 0 chr1 9602826 9603123 -272590541 + AluSx SINE Alu 1 298 -14 1261 116 0 22 chr1 9603123 9603288 -272590376 + AluSc SINE Alu 134 296 -13 2137 110 10 7 chr1 9603290 9603580 -272590084 + AluY SINE Alu 3 293 -18 2350 110 0 3 chr1 9603728 9604038 -272589626 + AluSx SINE Alu 1 309 -3 736 112 32 8 chr1 9604325 9604450 -272589214 - AluY SINE Alu -171 140 13 1882 173 0 0 chr1 9604704 9605023 -272588641 + AluJb SINE Alu 1 312 0 2127 143 0 0 chr1 9605374 9605668 -272587996 - AluSx SINE Alu -14 298 5 2317 114 0 0 chr1 9606089 9606388 -272587276 + AluSx SINE Alu 2 300 -12 2193 109 0 56 chr1 9606723 9606861 -272586803 + AluSx SINE Alu 1 145 -167 207 100 0 0 chr1 9606861 9606891 -272586773 + (TA)n Simple_repeat Simple_repeat 1 30 0 2193 109 0 56 chr1 9606891 9607072 -272586592 + AluSx SINE Alu 145 302 -10 702 157 0 8 chr1 9607191 9607312 -272586352 - AluSg/x SINE Alu -5 307 188 1723 148 25 21 chr1 9607499 9607782 -272585882 - AluJb SINE Alu -28 284 1 1528 231 23 11 chr1 9608116 9608467 -272585197 - L2 LINE L2 -562 2752 2398 241 222 0 0 chr1 9608476 9608521 -272585143 + FRAM SINE Alu 4 48 -116 * 495 137 0 0 chr1 9608518 9608591 -272585073 - 7SK RNA RNA 0 193 121 721 142 0 16 chr1 9608628 9608755 -272584909 - 7SK RNA RNA -68 125 1 898 158 0 0 chr1 9608755 9608888 -272584776 + FRAM SINE Alu 34 166 -10 592 222 23 34 chr1 9608897 9609073 -272584591 - L2 LINE L2 -928 2386 2213 1283 214 34 34 chr1 9609073 9609396 -272584268 - MLT1B LTR MaLR 0 390 68 1903 164 31 0 chr1 9610020 9610312 -272583352 + AluJb SINE Alu 1 301 -11 2109 112 20 3 chr1 9610361 9610655 -272583009 - AluSg SINE Alu -11 299 1 2109 127 7 0 chr1 9610799 9611122 -272582542 - AluSx SINE Alu 0 325 1 724 200 0 0 chr1 9611402 9611527 -272582137 + FRAM SINE Alu 9 133 -43 551 130 176 0 chr1 9611677 9611785 -272581879 - AluJo SINE Alu -178 134 8 2525 57 0 3 chr1 9611800 9612101 -272581563 - AluSg SINE Alu -10 300 1 21 36 0 0 chr1 9613793 9613821 -272579843 + AT_rich Low_complexity Low_complexity 1 28 0 2325 92 0 16 chr1 9613856 9614159 -272579505 + AluSx SINE Alu 1 298 -14 2491 68 3 0 chr1 9614276 9614572 -272579092 + AluSc SINE Alu 1 297 -12 2079 141 16 0 chr1 9614578 9614883 -272578781 + AluSx SINE Alu 1 310 -2 291 292 299 0 chr1 9614944 9615088 -272578576 - L2 LINE L2 -214 3058 2872 1011 66 8 0 chr1 9615452 9615573 -272578091 + AluY SINE Alu 2 123 -188 1892 49 0 13 chr1 9615589 9615814 -272577850 + AluY SINE Alu 1 222 -89 1921 178 0 0 chr1 9616732 9617041 -272576623 - AluSx SINE Alu -3 309 1 400 308 116 61 chr1 9617046 9617226 -272576438 + L1M4 LINE L1 4607 4776 -1370 1400 114 137 107 chr1 9617226 9617525 -272576139 + AluSg SINE Alu 1 308 -2 * 1846 148 58 0 chr1 9617524 9617802 -272575862 + AluSx SINE Alu 1 294 -18 400 308 116 61 chr1 9617525 9618215 -272575449 + L1M4 LINE L1 4776 5233 -913 680 129 11 0 chr1 9618228 9618321 -272575343 + AluJb SINE Alu 195 288 -24 1773 170 25 0 chr1 9618425 9618708 -272574956 + AluJb SINE Alu 1 290 -22 2019 148 0 16 chr1 9619014 9619324 -272574340 - AluJo SINE Alu -7 305 1 1750 128 84 7 chr1 9619327 9619469 -272574195 - AluSx SINE Alu -17 295 165 2456 76 3 0 chr1 9619469 9619772 -272573892 - AluY SINE Alu -7 304 1 1750 128 84 7 chr1 9619772 9619903 -272573761 - AluSx SINE Alu -147 165 1 1131 53 0 8 chr1 9619903 9620036 -272573628 - AluY SINE Alu -179 132 1 780 173 15 8 chr1 9620066 9620199 -272573465 + AluJo SINE Alu 3 136 -176 189 330 22 44 chr1 9620512 9620603 -272573061 + MIR SINE MIR 27 115 -147 2339 101 3 0 chr1 9620740 9621036 -272572628 - AluSx SINE Alu -15 297 1 2179 126 7 0 chr1 9621426 9621736 -272571928 - AluSx SINE Alu 0 312 1 677 126 0 0 chr1 9621741 9621836 -272571828 - FLAM_C SINE Alu -14 129 35 787 216 20 102 chr1 9622551 9622632 -272571032 + MIR SINE MIR 7 93 -169 2153 127 7 10 chr1 9622632 9622939 -272570725 - AluSx SINE Alu -6 306 1 1804 187 10 3 chr1 9622949 9623259 -272570405 - AluJb SINE Alu 0 312 1 787 216 20 102 chr1 9623259 9623411 -272570253 + MIR SINE MIR 102 231 -31 231 114 0 0 chr1 9623568 9623603 -272570061 + (TA)n Simple_repeat Simple_repeat 1 35 0 2366 75 0 13 chr1 9623603 9623908 -272569756 - AluY SINE Alu -10 301 1 2451 60 0 80 chr1 9624169 9624505 -272569159 - AluSq SINE Alu -4 309 1 2175 108 0 20 chr1 9624517 9624822 -272568842 - AluSq SINE Alu -14 299 1 1229 163 8 67 chr1 9625233 9625313 -272568351 + AluJo SINE Alu 63 146 -166 2384 82 3 10 chr1 9625313 9625641 -272568023 + AluY SINE Alu 1 311 0 1229 163 8 67 chr1 9625641 9625800 -272567864 + AluJo SINE Alu 146 288 -24 2171 92 7 3 chr1 9625856 9626162 -272567502 + AluSq SINE Alu 1 307 0 546 241 152 7 chr1 9626897 9627042 -272566622 - MIR3 SINE MIR -11 197 32 3084 138 23 32 chr1 9627675 9627981 -272565683 - L1MB5 LINE L1 -3 6171 5871 2045 125 44 7 chr1 9627981 9628277 -272565387 - AluSq SINE Alu -4 309 3 3084 138 23 32 chr1 9628277 9628526 -272565138 - L1MB5 LINE L1 -303 5871 5621 2205 91 14 11 chr1 9628526 9628843 -272564821 - AluSp SINE Alu 0 318 1 2116 119 31 0 chr1 9628900 9629194 -272564470 + AluSg SINE Alu 1 303 -7 1685 168 31 3 chr1 9629273 9629559 -272564105 + AluSx SINE Alu 2 295 -17 448 271 43 15 chr1 9629703 9629876 -272563788 + MIR SINE MIR 42 213 -49 2441 64 27 0 chr1 9630687 9630982 -272562682 + AluY SINE Alu 1 303 -8 2247 100 4 0 chr1 9630989 9631269 -272562395 + AluSg SINE Alu 9 289 -21 23 0 0 0 chr1 9631436 9631459 -272562205 + AT_rich Low_complexity Low_complexity 1 23 0 1996 67 49 53 chr1 9631531 9631838 -272561826 - AluSp SINE Alu 0 308 3 275 170 0 19 chr1 9632163 9632216 -272561448 + AluJb SINE Alu 85 136 -166 2310 84 0 0 chr1 9632216 9632530 -272561134 + AluY SINE Alu 1 314 0 1069 76 0 0 chr1 9632685 9632816 -272560848 + AluSg1 SINE Alu 1 131 -178 2254 120 3 0 chr1 9632819 9633127 -272560537 + AluSx SINE Alu 1 309 -3 22 0 0 0 chr1 9633147 9633169 -272560495 + AT_rich Low_complexity Low_complexity 1 22 0 708 139 0 0 chr1 9633242 9633350 -272560314 + FLAM_A SINE Alu 35 142 0 1989 127 48 3 chr1 9633359 9633650 -272560014 + AluSx SINE Alu 1 304 -8 2242 119 0 3 chr1 9634761 9635063 -272558601 + AluSx SINE Alu 1 301 -11 885 175 121 0 chr1 9635063 9635229 -272558435 + AluYb8 SINE Alu 1 186 -132 1813 180 0 0 chr1 9635369 9635658 -272558006 - AluSx SINE Alu -23 289 1 396 304 116 62 chr1 9635663 9635843 -272557821 + L1M4 LINE L1 4607 4776 -1370 1411 113 141 100 chr1 9635843 9636134 -272557530 + AluSg SINE Alu 1 303 -7 1846 148 58 0 chr1 9636134 9636411 -272557253 + AluSx SINE Alu 1 294 -18 396 304 116 62 chr1 9636411 9636824 -272556840 + L1M4 LINE L1 4775 5233 -913 680 129 11 0 chr1 9636837 9636930 -272556734 + AluJb SINE Alu 195 288 -24 1773 170 25 0 chr1 9637034 9637317 -272556347 + AluJb SINE Alu 1 290 -22 1994 147 0 19 chr1 9637623 9637935 -272555729 - AluJo SINE Alu -6 306 1 1773 124 84 7 chr1 9637938 9638080 -272555584 - AluSx SINE Alu -17 295 165 2456 76 3 0 chr1 9638080 9638383 -272555281 - AluY SINE Alu -7 304 1 1773 124 84 7 chr1 9638383 9638514 -272555150 - AluSx SINE Alu -147 165 1 1131 53 0 8 chr1 9638514 9638647 -272555017 - AluY SINE Alu -179 132 1 780 173 15 8 chr1 9638677 9638810 -272554854 + AluJo SINE Alu 3 136 -176 189 330 22 44 chr1 9639123 9639214 -272554450 + MIR SINE MIR 27 115 -147 2348 101 3 0 chr1 9639351 9639648 -272554016 - AluSx SINE Alu -14 298 1 2196 123 7 0 chr1 9640038 9640348 -272553316 - AluSx SINE Alu 0 312 1 677 126 0 0 chr1 9640353 9640448 -272553216 - FLAM_C SINE Alu -14 129 35 765 219 20 106 chr1 9641163 9641244 -272552420 + MIR SINE MIR 7 93 -169 2124 130 7 10 chr1 9641244 9641551 -272552113 - AluSx SINE Alu -6 306 1 765 219 20 106 chr1 9641551 9641562 -272552102 + MIR SINE MIR 93 103 -159 1661 189 19 3 chr1 9641562 9641869 -272551795 - AluJb SINE Alu 0 312 1 765 219 20 106 chr1 9641869 9642021 -272551643 + MIR SINE MIR 103 231 -31 216 97 0 0 chr1 9642178 9642209 -272551455 + (TA)n Simple_repeat Simple_repeat 1 31 0 2442 73 0 13 chr1 9642209 9642523 -272551141 - AluY SINE Alu -1 310 1 2586 75 0 0 chr1 9642784 9643092 -272550572 - AluSq SINE Alu -5 308 1 231 330 30 20 chr1 9643937 9644037 -272549627 + MIR SINE MIR 58 158 -104 1224 99 0 29 chr1 9646516 9646716 -272546948 + AluSg/x SINE Alu 129 312 0 642 162 80 32 chr1 9646733 9646747 -272546917 + L1M4 LINE L1 5411 5423 -745 2383 78 0 36 chr1 9646747 9647056 -272546608 + AluY SINE Alu 1 298 -13 2041 110 0 38 chr1 9647056 9647375 -272546289 + AluSx SINE Alu 1 308 0 642 162 80 32 chr1 9647375 9647512 -272546152 + L1M4 LINE L1 5422 5566 -602 1281 304 109 24 chr1 9647512 9648329 -272545335 + L2 LINE L2 2375 3278 -35 299 240 211 10 chr1 9648336 9648440 -272545224 - MIR SINE MIR -62 146 22 2161 104 0 74 chr1 9649855 9650192 -272543472 + AluSx SINE Alu 1 312 0 306 214 29 68 chr1 9651326 9651429 -272542235 + MIR SINE MIR 45 143 -65 821 137 8 0 chr1 9651812 9651929 -272541735 - FLAM_C SINE Alu -15 118 1 454 280 63 46 chr1 9651941 9652116 -272541548 - MER5A DNA MER1_type -6 183 6 2496 58 0 0 chr1 9653881 9654173 -272539491 - AluY SINE Alu -19 292 1 2286 121 0 0 chr1 9654492 9654790 -272538874 + AluSx SINE Alu 1 298 -14 2553 70 0 13 chr1 9654864 9655179 -272538485 + AluY SINE Alu 1 311 0 233 317 80 66 chr1 9655871 9655956 -272537708 - L2 LINE L2 -506 2808 2726 2061 113 49 0 chr1 9655956 9656240 -272537424 + AluSx SINE Alu 1 298 -14 233 317 80 66 chr1 9656240 9656504 -272537160 - L2 LINE L2 -588 2726 2454 2026 148 0 26 chr1 9658168 9658478 -272535186 - AluSx SINE Alu -9 303 2 2061 131 0 25 chr1 9658529 9658843 -272534821 - AluJo SINE Alu -6 306 1 342 120 0 0 chr1 9658907 9658982 -272534682 - AluSx SINE Alu 0 308 234 1354 140 0 0 chr1 9658982 9659168 -272534496 - AluSx SINE Alu -126 186 1 229 330 30 20 chr1 9660012 9660112 -272533552 + MIR SINE MIR 58 158 -104 373 275 167 28 chr1 9663198 9663286 -272530378 + L2 LINE L2 2607 2681 -633 1577 139 0 16 chr1 9663286 9663544 -272530120 - AluJo SINE Alu -21 291 38 373 275 167 28 chr1 9663544 9663779 -272529885 + L2 LINE L2 2681 2975 -339 1391 174 34 19 chr1 9663830 9664094 -272529570 - AluJo SINE Alu -41 271 4 2019 135 3 3 chr1 9665877 9666189 -272527475 + AluSx SINE Alu 1 312 0 438 20 0 0 chr1 9666384 9666435 -272527229 + (CA)n Simple_repeat Simple_repeat 2 52 0 2172 92 0 3 chr1 9668461 9668753 -272524911 + AluSg SINE Alu 2 292 -18 24 0 0 0 chr1 9669448 9669472 -272524192 + AT_rich Low_complexity Low_complexity 1 24 0 5560 65 7 7 chr1 9669510 9670214 -272523450 - L1PA8 LINE L1 -3 6169 5466 210 214 0 0 chr1 9670239 9670281 -272523383 - MIR SINE MIR -110 152 111 265 350 60 0 chr1 9670334 9670451 -272523213 + MIR3 SINE MIR 45 168 -40 735 167 78 111 chr1 9670480 9670580 -272523084 + MER45A DNA AcHobo 2 104 -1477 1620 180 42 0 chr1 9670580 9670869 -272522795 - AluJo SINE Alu -11 301 1 2303 87 3 3 chr1 9670875 9671184 -272522480 - AluSq SINE Alu -4 309 1 735 167 78 111 chr1 9671184 9671256 -272522408 + MER45A DNA AcHobo 109 175 -3 235 301 147 15 chr1 9671782 9671918 -272521746 - L2 LINE L2 -9 3263 3110 207 289 18 53 chr1 9673473 9673587 -272520077 + G-rich Low_complexity Low_complexity 2 111 0 434 300 180 27 chr1 9674506 9674873 -272518791 - L2 LINE L2 -547 2767 2345 398 229 76 30 chr1 9674850 9674981 -272518683 + MIR SINE MIR 71 207 -55 * 1333 164 5 0 chr1 9674992 9675205 -272518459 + AluJb SINE Alu 87 300 -12 2025 107 41 0 chr1 9675205 9675496 -272518168 + AluSp SINE Alu 1 303 -10 228 227 0 0 chr1 9675511 9675555 -272518109 + MIR SINE MIR 218 261 -1 782 211 47 26 chr1 9675813 9676003 -272517661 - MER20 DNA MER1_type -25 194 1 221 348 136 25 chr1 9676032 9676243 -272517421 - MIR3 SINE MIR -24 238 1 528 254 71 3 chr1 9676759 9676928 -272516736 - MIR SINE MIR -63 145 13 2058 106 41 0 chr1 9676978 9677270 -272516394 + AluSc SINE Alu 1 304 -5 413 149 14 14 chr1 9677378 9677452 -272516212 - AluSg/x SINE Alu -22 287 214 548 231 64 6 chr1 9677554 9677710 -272515954 - AluSq SINE Alu -148 165 1 842 97 49 56 chr1 9677738 9677882 -272515782 + AluJb SINE Alu 6 148 -164 1794 66 125 15 chr1 9677882 9678154 -272515510 + AluSg SINE Alu 1 302 -8 482 171 152 0 chr1 9678848 9678953 -272514711 + MER20 DNA MER1_type 3 123 -96 241 272 168 8 chr1 9679044 9679169 -272514495 + L2 LINE L2 2908 3052 -220 719 207 0 0 chr1 9681243 9681364 -272512300 + AluJo/FLAM SINE Alu 2 122 -190 1077 114 0 45 chr1 9681364 9681540 -272512124 - AluSg/x SINE Alu 0 312 145 2201 96 0 0 chr1 9681640 9681931 -272511733 + AluSc SINE Alu 5 295 -14 426 219 187 0 chr1 9681966 9682089 -272511575 + MLT1H LTR MaLR 35 180 -369 2216 81 17 3 chr1 9682540 9682835 -272510829 - AluY SINE Alu -12 299 1 342 278 122 17 chr1 9682841 9683136 -272510528 - HAL1 LINE L1 -5 2502 2177 1479 263 71 34 chr1 9683142 9683480 -272510184 - HAL1 LINE L1 -923 1584 1211 1793 123 4 0 chr1 9683480 9683740 -272509924 - AluSx SINE Alu -12 300 40 1479 263 71 34 chr1 9683740 9684017 -272509647 - HAL1 LINE L1 -1296 1211 946 262 296 14 0 chr1 9684089 9684160 -272509504 - HAL1 LINE L1 -1798 709 638 298 261 87 87 chr1 9684161 9684276 -272509388 + MIR SINE MIR 5 119 -143 1262 117 0 6 chr1 9684279 9684459 -272509205 - AluSg/x SINE Alu 0 310 132 1882 71 0 20 chr1 9684459 9684712 -272508952 - AluY SINE Alu -11 300 53 282 114 0 0 chr1 9684812 9684856 -272508808 - AluJ/FLAM SINE Alu -224 78 35 1086 158 5 41 chr1 9684864 9685085 -272508579 + AluJo SINE Alu 87 299 -13 1871 113 53 3 chr1 9685189 9685472 -272508192 + AluY SINE Alu 1 297 -14 2333 87 0 0 chr1 9685559 9685859 -272507805 + AluSc SINE Alu 1 300 -9 2042 131 3 6 chr1 9685913 9686225 -272507439 - AluSx SINE Alu -1 311 1 1432 178 65 7 chr1 9686245 9686520 -272507144 + AluJo SINE Alu 3 293 -19 2062 128 0 0 chr1 9686538 9686834 -272506830 + AluSx SINE Alu 1 296 -16 24 38 0 38 chr1 9686834 9686852 -272506812 + AT_rich Low_complexity Low_complexity 1 18 -33 2137 116 0 0 chr1 9686852 9687144 -272506520 + AluSx SINE Alu 1 292 -20 24 38 0 38 chr1 9687144 9687178 -272506486 + AT_rich Low_complexity Low_complexity 18 51 0 622 249 83 5 chr1 9687249 9687454 -272506210 + HAL1 LINE L1 1359 1579 -928 1872 128 0 43 chr1 9687463 9687768 -272505896 + AluSx SINE Alu 1 292 -20 298 244 37 24 chr1 9687873 9687955 -272505709 - HAL1 LINE L1 -767 1740 1658 278 266 195 0 chr1 9687948 9688061 -272505603 + HAL1 LINE L1 1678 1812 -695 * 1584 157 29 55 chr1 9688208 9688520 -272505144 + AluJb SINE Alu 2 305 -7 2356 69 0 3 chr1 9688590 9688893 -272504771 - AluY SINE Alu -9 302 1 194 158 26 0 chr1 9688942 9688980 -272504684 + L2 LINE L2 2720 2758 -556 260 226 97 0 chr1 9689081 9689143 -272504521 + MIR SINE MIR 20 87 -121 2146 97 7 3 chr1 9689321 9689619 -272504045 - AluSg SINE Alu -11 299 1 303 273 15 0 chr1 9689640 9689706 -272503958 + L1MC/D LINE L1 5709 5775 -2033 1915 145 0 0 chr1 9689796 9690104 -272503560 - AluSx SINE Alu 0 308 1 296 178 0 0 chr1 9690121 9690166 -272503498 + Alu SINE Alu 2 46 -256 1885 115 4 18 chr1 9790172 9790451 -272403213 + LTR8 LTR ERV1 417 691 0 914 185 33 0 chr1 9790471 9790622 -272403042 + FRAM SINE Alu 1 155 -21 2101 107 4 0 chr1 9790622 9790892 -272402772 + AluSx SINE Alu 1 271 -41 182 36 0 36 chr1 9790898 9790926 -272402738 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 634 173 0 0 chr1 9791142 9791246 -272402418 + AluJb SINE Alu 2 105 -207 711 276 268 8 chr1 9791246 9791630 -272402034 + MER20B DNA MER1_type 300 783 0 2176 126 7 0 chr1 9791760 9792062 -272401602 - AluSx SINE Alu -8 304 1 2190 105 7 0 chr1 9792082 9792378 -272401286 - AluSx SINE Alu -14 298 1 1549 155 119 10 chr1 9792551 9792854 -272400810 + MER44D DNA MER2_type 1 606 -3 2261 97 0 10 chr1 9793427 9793727 -272399937 - AluY SINE Alu -14 297 1 2290 103 7 0 chr1 9793727 9794028 -272399636 - AluSx SINE Alu -9 303 1 614 239 0 136 chr1 9794172 9794258 -272399406 - MIR SINE MIR -12 250 154 1850 158 7 10 chr1 9794258 9794550 -272399114 - AluJo SINE Alu -21 291 1 614 239 0 136 chr1 9794550 9794706 -272398958 - MIR SINE MIR -108 154 41 2558 190 57 45 chr1 9794845 9795249 -272398415 + L1ME1 LINE L1 5516 5914 -420 2014 137 10 13 chr1 9795249 9795556 -272398108 + AluJb SINE Alu 1 306 -6 2558 190 57 45 chr1 9795556 9795806 -272397858 + L1ME1 LINE L1 5914 6334 0 298 251 176 21 chr1 9795921 9796038 -272397626 + MIR SINE MIR 14 147 -61 209 191 0 21 chr1 9796072 9796119 -272397545 - L2 LINE L2 -1 3312 3267 1605 182 27 0 chr1 9796411 9796669 -272396995 + AluJo SINE Alu 1 265 -47 1069 119 0 13 chr1 9796877 9797028 -272396636 + AluSg1 SINE Alu 1 149 -160 280 335 12 24 chr1 9797202 9797372 -272396292 + T-rich Low_complexity Low_complexity 2 169 0 1429 163 57 43 chr1 9798119 9798401 -272395263 + AluJo SINE Alu 1 286 -26 237 33 0 0 chr1 9798401 9798431 -272395233 + (CAAT)n Simple_repeat Simple_repeat 2 31 0 22 0 0 0 chr1 9799260 9799282 -272394382 + AT_rich Low_complexity Low_complexity 1 22 0 260 208 38 66 chr1 9799515 9799621 -272394043 + MIR3 SINE MIR 106 208 0 1326 132 78 5 chr1 9801515 9801734 -272391930 - MER46A DNA MER2_type -1 235 1 239 79 26 0 chr1 9801827 9801865 -272391799 + (TCCA)n Simple_repeat Simple_repeat 3 41 0 208 217 33 17 chr1 9801867 9801927 -272391737 - L2 LINE L2 -5 3308 3248 207 239 60 45 chr1 9802326 9802393 -272391271 - L2 LINE L2 -9 3263 3196 2007 102 46 14 chr1 9803721 9804006 -272389658 + AluSg SINE Alu 1 294 -16 1761 121 0 0 chr1 9804053 9804292 -272389372 + AluSq SINE Alu 1 239 -74 321 277 27 18 chr1 9804294 9804406 -272389258 + L1ME2 LINE L1 3387 3499 -2647 1895 163 0 0 chr1 9804428 9804723 -272388941 + AluSx SINE Alu 1 295 -17 2525 84 0 0 chr1 9804726 9805035 -272388629 + AluSc SINE Alu 1 309 0 2445 225 48 73 chr1 9805038 9805522 -272388142 + L1ME2 LINE L1 3475 3970 -2176 2343 91 0 7 chr1 9805522 9805819 -272387845 + AluSg1 SINE Alu 1 295 -14 1513 168 7 41 chr1 9805819 9806111 -272387553 - AluJo SINE Alu -30 282 1 2445 225 48 73 chr1 9806111 9806451 -272387213 + L1ME2 LINE L1 3969 4274 -1872 2333 87 0 7 chr1 9806451 9806750 -272386914 + AluSx SINE Alu 1 297 -15 2445 225 48 73 chr1 9806750 9806890 -272386774 + L1ME2 LINE L1 4274 4416 -1730 1804 154 6 41 chr1 9806890 9807209 -272386455 + AluJo SINE Alu 1 308 -4 832 209 61 26 chr1 9807242 9807418 -272386246 + L1ME2 LINE L1 5551 5740 -426 1929 238 136 17 chr1 9807418 9807948 -272385716 + MLT1E LTR MaLR 1 593 0 832 209 61 26 chr1 9807948 9808032 -272385632 + L1ME2 LINE L1 5740 5820 -346 943 133 0 0 chr1 9808036 9808171 -272385493 + AluSq/x SINE Alu 1 135 -177 2095 123 3 32 chr1 9808171 9808480 -272385184 + AluSq SINE Alu 1 300 -13 706 222 81 40 chr1 9808497 9808745 -272384919 + L1ME2 LINE L1 5825 6082 -82 265 106 64 21 chr1 9808747 9808794 -272384870 + L1ME1 LINE L1 6063 6111 -55 2202 117 3 3 chr1 9808894 9809193 -272384471 + AluSc SINE Alu 1 299 -10 886 170 0 0 chr1 9809205 9809340 -272384324 + AluJb SINE Alu 153 287 -25 839 251 59 12 chr1 9809390 9809645 -272384019 + L1MC4 LINE L1 7323 7589 -453 486 214 9 9 chr1 9809661 9809773 -272383891 + L1ME LINE L1 5655 5766 -404 2397 88 3 0 chr1 9809777 9810071 -272383593 + AluSc SINE Alu 1 295 -14 2180 111 0 3 chr1 9810086 9810374 -272383290 + AluSx SINE Alu 8 294 -18 1918 156 7 10 chr1 9810384 9810685 -272382979 + AluJb SINE Alu 1 300 -12 234 248 80 32 chr1 9810686 9810811 -272382853 + L1ME LINE L1 5757 5887 -283 1546 162 21 0 chr1 9810811 9811075 -272382589 + AluJo SINE Alu 40 308 0 2121 110 39 26 chr1 9811081 9811389 -272382275 + AluSx SINE Alu 1 312 0 675 206 72 65 chr1 9811456 9811648 -272382016 + L1MC4 LINE L1 7720 7916 -126 276 30 0 0 chr1 9811648 9811681 -272381983 + (GA)n Simple_repeat Simple_repeat 2 34 0 675 206 72 65 chr1 9811681 9811809 -272381855 + L1MC4 LINE L1 7916 8042 0 2260 111 3 7 chr1 9811814 9812121 -272381543 + AluSx SINE Alu 1 306 -6 1063 107 0 57 chr1 9812122 9812305 -272381359 + AluSg/x SINE Alu 134 307 0 294 312 135 57 chr1 9812405 9812484 -272381180 - MIR3 SINE MIR -19 243 172 1028 190 0 6 chr1 9812484 9812658 -272381006 - FAM SINE Alu -2 173 1 294 312 135 57 chr1 9812658 9812805 -272380859 - MIR3 SINE MIR -90 172 4 269 150 0 0 chr1 9813065 9813105 -272380559 + Alu SINE Alu 1 40 -268 1681 192 0 0 chr1 9813133 9813414 -272380250 - AluJb SINE Alu -31 281 1 2413 70 0 20 chr1 9813458 9813759 -272379905 + AluY SINE Alu 1 295 -16 900 178 41 0 chr1 9813762 9813908 -272379756 + AluJb SINE Alu 133 284 -28 884 246 8 54 chr1 9814274 9814320 -272379344 - MIR SINE MIR -32 230 183 2083 116 3 3 chr1 9814320 9814626 -272379038 + AluSx SINE Alu 1 306 0 884 246 8 54 chr1 9814626 9814818 -272378846 - MIR SINE MIR -79 183 2 2493 70 0 0 chr1 9815139 9815438 -272378226 + AluY SINE Alu 1 299 -12 2064 115 35 0 chr1 9815718 9816006 -272377658 + AluSx SINE Alu 1 298 -14 292 218 46 35 chr1 9816572 9816659 -272377005 + MIR SINE MIR 118 205 -57 2420 74 3 0 chr1 9817780 9818079 -272375585 - AluSp SINE Alu -13 300 1 287 277 84 0 chr1 9818201 9818284 -272375380 - L2 LINE L2 -18 3254 3165 1065 186 0 0 chr1 9818458 9818641 -272375023 + FRAM SINE Alu 1 175 -1 2257 107 3 3 chr1 9818823 9819133 -272374531 - AluSx SINE Alu 0 312 3 838 146 0 0 chr1 9819164 9819294 -272374370 + FRAM SINE Alu 1 40 0 440 262 73 43 chr1 9820637 9820836 -272372828 + MIR SINE MIR 21 216 -46 2221 75 3 3 chr1 9821422 9821704 -272371960 - AluY SINE Alu -6 305 24 2358 91 0 7 chr1 9821874 9822171 -272371493 - AluSg1 SINE Alu -14 295 1 1189 249 47 20 chr1 9822205 9822655 -272371009 - L1M4 LINE L1 -2210 3936 3475 2546 84 0 0 chr1 9822658 9822967 -272370697 - AluSc SINE Alu 0 309 1 1974 156 0 0 chr1 9822970 9823265 -272370399 - AluSx SINE Alu -17 295 1 396 292 18 18 chr1 9823287 9823400 -272370264 - L1M4 LINE L1 -2647 3499 3387 1773 121 0 0 chr1 9823402 9823641 -272370023 - AluSq SINE Alu -74 239 1 1564 279 102 21 chr1 9823646 9823683 -272369981 - L1MEc LINE L1 -5331 1065 1032 2414 76 0 13 chr1 9823683 9823987 -272369677 - AluY SINE Alu -11 300 1 1564 279 102 21 chr1 9823987 9824170 -272369494 - L1MEc LINE L1 -5364 1032 865 2482 75 0 0 chr1 9824170 9824465 -272369199 - AluSp SINE Alu -18 295 1 1564 279 102 21 chr1 9824465 9825195 -272368469 - L1MEc LINE L1 -5531 865 37 233 186 0 0 chr1 9825196 9825239 -272368425 - L2 LINE L2 -565 2749 2707 * 415 207 71 71 chr1 9825223 9825363 -272368301 - MIR SINE MIR -59 203 64 1951 139 37 7 chr1 9825885 9826179 -272367485 - AluJb SINE Alu -9 303 1 862 114 18 0 chr1 9826237 9826351 -272367313 - AluSq/x SINE Alu -196 116 1 227 216 20 0 chr1 9826422 9826473 -272367191 + AluJb SINE Alu 120 171 -131 1631 161 51 15 chr1 9826570 9826844 -272366820 - AluJo SINE Alu -17 295 12 2194 130 0 7 chr1 9826859 9827167 -272366497 - AluSx SINE Alu -6 306 1 503 230 139 24 chr1 9827650 9827815 -272365849 + MIR SINE MIR 50 233 -29 678 278 129 93 chr1 9827907 9828615 -272365049 - L2 LINE L2 0 3272 2508 1768 170 0 0 chr1 9828615 9828886 -272364778 - AluJo SINE Alu -15 297 27 678 278 129 93 chr1 9828886 9829181 -272364483 - L2 LINE L2 -764 2508 2225 22 0 0 0 chr1 9832063 9832085 -272361579 + AT_rich Low_complexity Low_complexity 1 22 0 36 0 0 0 chr1 9832141 9832177 -272361487 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr1 9832277 9832300 -272361364 + AT_rich Low_complexity Low_complexity 1 23 0 1794 178 0 10 chr1 9833182 9833523 -272360141 + AluJo SINE Alu 1 312 0 2424 87 0 0 chr1 9834630 9834930 -272358734 - AluSg SINE Alu -10 300 1 1822 113 117 11 chr1 9835305 9835587 -272358077 + AluSx SINE Alu 1 312 0 2107 137 0 0 chr1 9835763 9836056 -272357608 - AluSx SINE Alu -19 293 1 2361 51 19 29 chr1 9836476 9836788 -272356876 - AluY SINE Alu -2 309 1 1680 170 25 11 chr1 9836820 9837102 -272356562 + AluJb SINE Alu 1 286 -26 2048 141 0 16 chr1 9837973 9838286 -272355378 - AluJo SINE Alu -4 308 1 1028 96 0 0 chr1 9838362 9838497 -272355167 + AluSg/x SINE Alu 178 312 0 2293 119 7 0 chr1 9838902 9839212 -272354452 - AluSx SINE Alu 0 312 1 385 190 20 10 chr1 9839885 9839985 -272353679 + CT-rich Low_complexity Low_complexity 5 105 0 1919 116 11 22 chr1 9839991 9840268 -272353396 - AluSx SINE Alu -38 274 1 1520 162 102 4 chr1 9840366 9840632 -272353032 + AluJo SINE Alu 1 292 -20 701 203 7 22 chr1 9840717 9840855 -272352809 - AluJo SINE Alu -176 136 1 2182 109 0 0 chr1 9840863 9841139 -272352525 - AluSx SINE Alu -16 296 21 2230 92 13 13 chr1 9841450 9841755 -272351909 - AluSp SINE Alu -8 305 1 315 283 217 7 chr1 9842280 9842432 -272351232 - MIR SINE MIR -55 207 24 2331 57 54 3 chr1 9843373 9843669 -272349995 - AluY SINE Alu 0 311 1 2405 56 0 40 chr1 9844122 9844426 -272349238 - AluY SINE Alu -18 293 2 189 264 92 35 chr1 9845451 9845538 -272348126 + L2 LINE L2 3213 3304 -9 251 196 20 0 chr1 9845851 9845902 -272347762 + L2 LINE L2 3262 3313 0 304 260 29 58 chr1 9846398 9846502 -272347162 - L1M4 LINE L1 -2973 3173 3073 2316 84 3 0 chr1 9847144 9847430 -272346234 - AluY SINE Alu -24 287 1 2257 103 3 13 chr1 9847857 9848169 -272345495 - AluSc SINE Alu 0 309 1 225 211 0 0 chr1 9849255 9849307 -272344357 + A-rich Low_complexity Low_complexity 1 52 0 375 23 0 0 chr1 9849329 9849373 -272344291 + (TG)n Simple_repeat Simple_repeat 1 44 0 1211 156 8 181 chr1 9854951 9855310 -272338354 - AluJb SINE Alu -5 297 1 2041 144 3 25 chr1 9855325 9855644 -272338020 - AluJb SINE Alu 0 312 1 334 256 179 89 chr1 9856113 9856426 -272337238 - HAL1 LINE L1 -1292 1215 875 344 286 70 41 chr1 9856695 9856866 -272336798 - MIR SINE MIR -50 212 37 560 264 130 13 chr1 9857489 9857720 -272335944 + L3 LINE CR1 1279 1536 -41 1983 143 0 0 chr1 9857869 9858162 -272335502 - AluSg SINE Alu -17 293 1 2145 95 3 0 chr1 9858164 9858458 -272335206 - AluY SINE Alu -16 295 1 1801 124 11 0 chr1 9858460 9858725 -272334939 - AluSx SINE Alu -11 301 34 1594 97 8 53 chr1 9858830 9859077 -272334587 - MER46A DNA MER2_type 0 236 1 2119 119 7 3 chr1 9859170 9859473 -272334191 + AluSx SINE Alu 1 304 -8 2294 90 3 0 chr1 9859479 9859780 -272333884 + AluSc SINE Alu 1 302 -7 1808 156 19 10 chr1 9859905 9860213 -272333451 - AluSx SINE Alu -1 311 1 23 33 0 0 chr1 9863898 9863928 -272329736 + AT_rich Low_complexity Low_complexity 1 30 0 294 346 6 13 chr1 9866596 9866752 -272326912 + CT-rich Low_complexity Low_complexity 1 155 0 210 143 0 0 chr1 9868019 9868054 -272325610 + (TG)n Simple_repeat Simple_repeat 1 35 0 640 276 51 70 chr1 9870236 9870548 -272323116 - L2 LINE L2 -8 3305 3000 27 0 0 0 chr1 9871257 9871284 -272322380 + AT_rich Low_complexity Low_complexity 1 27 0 337 283 10 30 chr1 9873424 9873523 -272320141 - MER81 DNA DNA 0 114 18 394 283 118 56 chr1 9874336 9874727 -272318937 - L1MC4a LINE L1 -297 5824 5759 2186 107 0 0 chr1 9874727 9875036 -272318628 + AluY SINE Alu 1 309 -2 1729 131 48 14 chr1 9875160 9875475 -272318189 - AluJo SINE Alu 0 336 12 2003 134 0 7 chr1 9875490 9875796 -272317868 - AluSx SINE Alu -8 304 1 509 230 139 24 chr1 9876279 9876444 -272317220 + MIR SINE MIR 50 233 -29 657 278 129 93 chr1 9876536 9877244 -272316420 - L2 LINE L2 0 3272 2508 1630 170 0 0 chr1 9877244 9877515 -272316149 - AluJo SINE Alu -15 297 27 657 278 129 93 chr1 9877515 9877810 -272315854 - L2 LINE L2 -764 2508 2225 22 0 0 0 chr1 9880692 9880714 -272312950 + AT_rich Low_complexity Low_complexity 1 22 0 36 0 0 0 chr1 9880770 9880806 -272312858 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr1 9880906 9880929 -272312735 + AT_rich Low_complexity Low_complexity 1 23 0 1660 170 0 0 chr1 9881811 9882128 -272311536 + AluJo SINE Alu 1 317 0 2099 97 3 7 chr1 9883254 9883554 -272310110 - AluSg SINE Alu -11 299 1 1622 139 10 17 chr1 9883929 9884217 -272309447 + AluSx SINE Alu 1 286 -26 935 137 18 36 chr1 9884366 9884534 -272309130 + FRAM SINE Alu 1 165 -1 2099 125 0 3 chr1 9884954 9885267 -272308397 - AluSx SINE Alu 0 312 1 2088 193 68 45 chr1 9885268 9885349 -272308315 + L1ME1 LINE L1 5580 5658 -676 1557 142 56 8 chr1 9885349 9885617 -272308047 + AluSg SINE Alu 1 281 -29 2088 193 68 45 chr1 9885617 9886121 -272307543 + L1ME1 LINE L1 5658 6334 0 928 182 0 6 chr1 9886163 9886328 -272307336 + FRAM SINE Alu 1 161 -15 2014 108 3 0 chr1 9886330 9886616 -272307048 + AluSx SINE Alu 1 287 -25 2322 71 0 0 chr1 9886630 9886926 -272306738 + AluSg SINE Alu 1 296 -14 380 305 99 0 chr1 9886945 9887096 -272306568 - Charlie1b DNA MER1_type -211 312 147 2289 73 3 0 chr1 9888029 9888316 -272305348 - AluSq SINE Alu -25 288 1 2027 107 7 0 chr1 9888642 9888966 -272304698 - AluSx SINE Alu 0 326 1 838 132 0 0 chr1 9890018 9890147 -272303517 - AluSp/q SINE Alu -12 301 173 1875 112 0 14 chr1 9890698 9890984 -272302680 - AluSx SINE Alu -19 293 12 701 188 0 16 chr1 9891009 9891137 -272302527 - FLAM_C SINE Alu -16 127 2 343 258 62 56 chr1 9891137 9891281 -272302383 - L1M4 LINE L1 -6376 479 23 2005 77 26 4 chr1 9891552 9891824 -272301840 + AluSq SINE Alu 14 291 -22 933 151 6 67 chr1 9891831 9892010 -272301654 + AluSg/x SINE Alu 130 297 -15 227 217 14 72 chr1 9892243 9892312 -272301352 - MIR SINE MIR -124 84 20 319 226 105 65 chr1 9893282 9893406 -272300258 - FLAM_A SINE Alu -4 129 1 189 0 0 0 chr1 9893409 9893430 -272300234 + (T)n Simple_repeat Simple_repeat 1 21 0 1796 117 44 11 chr1 9893562 9893835 -272299829 - AluSx SINE Alu -30 282 1 1428 162 21 0 chr1 9893841 9894105 -272299559 - AluJo SINE Alu 0 308 40 241 197 38 29 chr1 9894105 9894230 -272299434 - L1ME LINE L1 -277 5887 5757 1061 218 0 25 chr1 9894231 9894511 -272299153 - AluJb SINE Alu -13 299 27 2001 122 0 0 chr1 9894547 9894841 -272298823 - AluSx SINE Alu -18 294 1 2300 60 10 3 chr1 9894880 9895181 -272298483 + AluY SINE Alu 1 303 -8 2321 58 3 22 chr1 9895311 9895623 -272298041 + AluSp SINE Alu 1 306 -7 968 88 15 0 chr1 9895679 9895816 -272297848 + AluSp/q SINE Alu 165 303 -10 457 276 0 24 chr1 9895845 9895968 -272297696 + MSTB LTR MaLR 208 327 -99 906 114 0 0 chr1 9895973 9896104 -272297560 - AluSg1 SINE Alu -178 131 1 278 103 0 0 chr1 9896104 9896143 -272297521 + MSTB LTR MaLR 388 426 0 2260 91 0 7 chr1 9896203 9896510 -272297154 + AluY SINE Alu 1 305 -6 687 106 19 10 chr1 9896623 9896727 -272296937 + AluSq/x SINE Alu 29 133 -180 2201 104 0 7 chr1 9897672 9897981 -272295683 - AluSx SINE Alu -5 307 1 902 181 71 16 chr1 9898012 9898194 -272295470 + AluJo SINE Alu 86 277 -35 22 0 0 0 chr1 9898196 9898218 -272295446 + AT_rich Low_complexity Low_complexity 1 22 0 1662 104 0 4 chr1 9898789 9899019 -272294645 + AluSx SINE Alu 1 229 -83 1831 104 0 0 chr1 9899422 9899681 -272293983 - AluY SINE Alu -12 299 41 914 231 124 43 chr1 9899716 9900028 -272293636 + L1MEc LINE L1 1836 2121 -4275 2027 121 7 3 chr1 9900028 9900333 -272293331 + AluSx SINE Alu 1 306 -6 914 231 124 43 chr1 9900333 9900553 -272293111 + L1MEc LINE L1 2121 2411 -3985 22 0 0 0 chr1 9901031 9901053 -272292611 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr1 9901185 9901208 -272292456 + AT_rich Low_complexity Low_complexity 1 23 0 2142 112 0 3 chr1 9901505 9901810 -272291854 - AluSx SINE Alu -8 304 1 1672 171 3 7 chr1 9902140 9902427 -272291237 - AluJo SINE Alu -22 290 5 1749 162 13 19 chr1 9902707 9903021 -272290643 - AluJb SINE Alu 0 312 1 534 222 139 0 chr1 9903725 9903869 -272289795 - MIR SINE MIR -96 166 3 2122 114 3 0 chr1 9904516 9904815 -272288849 - AluSp SINE Alu -13 300 1 602 204 39 73 chr1 9904815 9904902 -272288762 - L1M4b LINE L1 -4539 2418 2330 1226 181 102 8 chr1 9904902 9905167 -272288497 - AluJo SINE Alu -22 290 1 602 204 39 73 chr1 9905167 9905285 -272288379 - L1M4b LINE L1 -4627 2330 2220 1912 150 10 3 chr1 9905295 9905601 -272288063 - AluJb SINE Alu -4 308 1 1636 168 39 39 chr1 9905608 9905918 -272287746 - AluJo SINE Alu 0 312 3 2398 82 3 7 chr1 9906103 9906407 -272287257 - AluSq SINE Alu -10 303 1 2408 114 0 0 chr1 9906424 9906732 -272286932 - AluSx SINE Alu -4 308 1 2443 80 3 0 chr1 9906999 9907301 -272286363 + AluY SINE Alu 1 303 -8 2081 84 23 43 chr1 9907316 9907615 -272286049 + AluSp SINE Alu 3 295 -18 2162 108 0 10 chr1 9907626 9907931 -272285733 - AluSq SINE Alu 0 313 12 722 188 0 16 chr1 9907956 9908084 -272285580 - FLAM_C SINE Alu -16 127 2 349 258 62 56 chr1 9908084 9908228 -272285436 - L1M4b LINE L1 -6376 479 23 2137 77 26 4 chr1 9908499 9908771 -272284893 + AluSq SINE Alu 14 291 -22 1017 151 6 67 chr1 9908778 9908957 -272284707 + AluSg/x SINE Alu 128 295 -15 230 217 14 72 chr1 9909190 9909259 -272284405 - MIR SINE MIR -124 84 20 332 156 0 0 chr1 9910222 9910286 -272283378 - FLAM SINE Alu -4 129 66 1947 145 24 7 chr1 9910346 9910643 -272283021 - AluJo SINE Alu -7 305 4 588 162 0 18 chr1 9910654 9910765 -272282899 - FLAM_A SINE Alu -1 141 33 2496 72 0 3 chr1 9910956 9911261 -272282403 + AluY SINE Alu 1 304 -7 2447 92 0 3 chr1 9911516 9911820 -272281844 - AluSx SINE Alu -9 303 1 826 270 116 3 chr1 9911926 9912263 -272281401 + L2 LINE L2 1532 1906 -1408 628 259 146 0 chr1 9912444 9912602 -272281062 + MER5A DNA MER1_type 9 189 0 2262 73 0 17 chr1 9912648 9912958 -272280706 + AluY SINE Alu 1 305 0 1661 289 116 27 chr1 9913113 9913513 -272280151 + L2 LINE L2 1945 2308 -1005 2114 75 8 4 chr1 9913513 9913779 -272279885 - AluSq SINE Alu -14 299 33 1780 136 4 25 chr1 9913780 9914059 -272279605 - AluJo SINE Alu -23 289 17 1661 289 116 27 chr1 9914059 9914915 -272278749 + L2 LINE L2 2307 3309 -4 2132 121 0 14 chr1 9915089 9915386 -272278278 + AluSq SINE Alu 1 293 -20 2126 100 24 7 chr1 9915391 9915720 -272277944 + AluSg SINE Alu 1 334 0 1396 99 0 0 chr1 9915720 9915901 -272277763 + AluSg/x SINE Alu 126 306 -4 2361 99 0 0 chr1 9917084 9917378 -272276286 - AluSx SINE Alu -16 296 3 2302 110 3 0 chr1 9919847 9920147 -272273517 - AluSg SINE Alu -9 301 1 339 78 0 0 chr1 9920918 9920969 -272272695 + (TG)n Simple_repeat Simple_repeat 2 52 0 2417 84 0 28 chr1 9921701 9922023 -272271641 + AluSq SINE Alu 1 313 0 1913 123 18 4 chr1 9922119 9922420 -272271244 + AluSx SINE Alu 1 305 0 783 222 22 16 chr1 9923834 9924019 -272269645 + MER5A DNA MER1_type 4 189 0 2249 114 0 0 chr1 9924269 9924568 -272269096 + AluSx SINE Alu 1 299 -13 432 227 23 11 chr1 9925013 9925101 -272268563 - L2 LINE L2 -3 3269 3181 1928 109 0 0 chr1 9925101 9925348 -272268316 + AluSx SINE Alu 51 297 -15 688 252 81 33 chr1 9925438 9925594 -272268070 + MIR SINE MIR 33 203 -59 864 186 155 26 chr1 9925594 9925788 -272267876 - MER20B DNA MER1_type 0 219 1 688 252 81 33 chr1 9925788 9925841 -272267823 + MIR SINE MIR 203 252 -10 2366 112 0 0 chr1 9926276 9926580 -272267084 + AluSx SINE Alu 1 304 -8 234 0 0 0 chr1 9927107 9927133 -272266531 + (T)n Simple_repeat Simple_repeat 1 26 0 1171 214 95 18 chr1 9927269 9927605 -272266059 - L1ME1 LINE L1 -297 5869 5508 180 111 0 0 chr1 9927605 9927632 -272266032 + (A)n Simple_repeat Simple_repeat 1 27 0 910 227 38 30 chr1 9927733 9927933 -272265731 + MIR SINE MIR 4 201 -61 1992 112 73 3 chr1 9927933 9928220 -272265444 + AluSg1 SINE Alu 1 307 -2 2276 114 0 0 chr1 9928228 9928525 -272265139 + AluSg SINE Alu 1 297 -13 910 227 38 30 chr1 9928525 9928559 -272265105 + MIR SINE MIR 207 252 -10 432 227 23 11 chr1 9928970 9929058 -272264606 - L2 LINE L2 -3 3269 3181 1928 109 0 0 chr1 9929058 9929305 -272264359 + AluSx SINE Alu 51 297 -15 688 252 81 33 chr1 9929395 9929551 -272264113 + MIR SINE MIR 33 203 -59 864 186 155 26 chr1 9929551 9929745 -272263919 - MER20 DNA MER1_type 0 219 1 688 252 81 33 chr1 9929745 9929798 -272263866 + MIR SINE MIR 203 252 -10 2366 112 0 0 chr1 9930236 9930540 -272263124 + AluSx SINE Alu 1 304 -8 2266 113 27 0 chr1 9931067 9931368 -272262296 - AluSx SINE Alu -3 309 1 246 235 160 28 chr1 9931447 9931558 -272262106 + MIR SINE MIR 21 150 -58 2377 76 0 20 chr1 9931558 9931859 -272261805 + AluY SINE Alu 1 295 -16 246 235 160 28 chr1 9931859 9931871 -272261793 + MIR SINE MIR 150 159 -49 1437 170 22 107 chr1 9931897 9932079 -272261585 - AluJo SINE Alu -11 291 95 1446 188 114 0 chr1 9932079 9932357 -272261307 + AluJb SINE Alu 1 307 0 2165 105 14 0 chr1 9932357 9932482 -272261182 + AluSc SINE Alu 2 124 -185 2199 112 3 3 chr1 9932482 9932785 -272260879 + AluSg SINE Alu 1 303 -7 2165 105 14 0 chr1 9932785 9932944 -272260720 + AluSc SINE Alu 124 290 -19 1437 170 22 107 chr1 9932944 9933077 -272260587 - AluJo SINE Alu -205 97 1 547 294 17 23 chr1 9933077 9933254 -272260410 - L2 LINE L2 -11 3302 3127 183 42 0 0 chr1 9933309 9933333 -272260331 + (GTTTG)n Simple_repeat Simple_repeat 1 24 0 1906 164 0 0 chr1 9933333 9933614 -272260050 - AluJb SINE Alu -31 281 1 2603 62 0 0 chr1 9933655 9933959 -272259705 + AluY SINE Alu 1 304 -7 2425 84 3 0 chr1 9934082 9934379 -272259285 + AluSx SINE Alu 1 298 -14 1951 88 95 4 chr1 9935616 9935879 -272257785 + AluSq SINE Alu 3 289 -24 2404 61 0 14 chr1 9935889 9936186 -272257478 + AluY SINE Alu 1 293 -18 2479 63 7 7 chr1 9936839 9937139 -272256525 + AluY SINE Alu 1 300 -11 2310 98 3 0 chr1 9937219 9937516 -272256148 + AluY SINE Alu 1 298 -13 1728 86 125 16 chr1 9937528 9937784 -272255880 + AluSg1 SINE Alu 10 293 -16 1388 109 16 0 chr1 9937785 9937977 -272255687 - AluSg/x SINE Alu -13 299 105 2260 106 3 7 chr1 9938156 9938459 -272255205 - AluSq SINE Alu -7 306 5 991 181 71 16 chr1 9938496 9938678 -272254986 + AluJo SINE Alu 86 277 -35 23 0 0 0 chr1 9938680 9938703 -272254961 + AT_rich Low_complexity Low_complexity 1 23 0 2142 125 7 3 chr1 9939274 9939571 -272254093 + AluSx SINE Alu 1 298 -14 2203 126 7 0 chr1 9939591 9939893 -272253771 + AluSx SINE Alu 1 304 -8 730 271 268 8 chr1 9940023 9940407 -272253257 - MER20B DNA MER1_type 0 783 300 658 173 0 0 chr1 9940407 9940511 -272253153 - AluJb SINE Alu -207 105 2 182 36 0 36 chr1 9940727 9940755 -272252909 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 2034 101 4 22 chr1 9940760 9941038 -272252626 - AluSq SINE Alu -40 273 1 1459 138 0 28 chr1 9941062 9941280 -272252384 + AluJo SINE Alu 82 293 -19 240 35 0 0 chr1 9941920 9941949 -272251715 + (T)n Simple_repeat Simple_repeat 1 29 0 325 241 71 35 chr1 9942032 9942173 -272251491 - L3 LINE CR1 -28 1549 1404 2182 126 10 0 chr1 9942285 9942594 -272251070 - AluSx SINE Alu 0 312 1 542 174 0 0 chr1 9942696 9942782 -272250882 - AluSp SINE Alu -96 217 132 1635 173 11 4 chr1 9942782 9943053 -272250611 - AluJo SINE Alu -39 273 1 456 205 71 31 chr1 9943055 9943182 -272250482 + MER104 DNA Tc2 45 176 -4 313 293 178 19 chr1 9943186 9943343 -272250321 - L2 LINE L2 -2116 1198 1017 1800 155 40 10 chr1 9943346 9943643 -272250021 - AluJo SINE Alu -6 306 1 403 202 18 55 chr1 9943865 9943974 -272249690 - MER20B DNA MER1_type -678 105 1 816 191 0 14 chr1 9944337 9944484 -272249180 - FRAM SINE Alu -24 152 8 342 67 0 0 chr1 9944617 9944662 -272249002 + (TTA)n Simple_repeat Simple_repeat 2 46 0 1650 211 0 6 chr1 9944692 9945026 -272248638 - AluJb SINE Alu 0 312 1 2194 107 13 10 chr1 9945035 9945334 -272248330 - AluSx SINE Alu -12 300 1 2446 91 3 0 chr1 9945348 9945655 -272248009 - AluSp SINE Alu -5 308 1 1588 174 11 26 chr1 9945689 9945959 -272247705 - AluJo SINE Alu -46 266 1 755 319 111 11 chr1 9945990 9946341 -272247323 - L2 LINE L2 -28 3285 2900 668 227 78 0 chr1 9946890 9947044 -272246620 + MER21B LTR ERV1 329 494 -369 2171 131 0 16 chr1 9947279 9947591 -272246073 + AluSc SINE Alu 1 307 -2 1248 121 0 32 chr1 9947599 9947789 -272245875 + AluSg/x SINE Alu 127 310 0 574 104 0 0 chr1 9947806 9947883 -272245781 - Alu SINE Alu -231 78 2 2190 104 0 4 chr1 9947927 9948206 -272245458 + AluSx SINE Alu 18 295 -17 372 88 10 0 chr1 9948319 9948381 -272245283 - Alu SINE Alu -14 288 237 22 0 0 0 chr1 9948691 9948713 -272244951 + AT_rich Low_complexity Low_complexity 1 22 0 2408 101 0 0 chr1 9948713 9949021 -272244643 - AluSx SINE Alu -4 308 1 766 181 23 8 chr1 9949021 9949154 -272244510 - AluJo SINE Alu -176 136 2 209 257 188 20 chr1 9949155 9949256 -272244408 + L2 LINE L2 3155 3272 0 2590 63 0 0 chr1 9949945 9950245 -272243419 - AluY SINE Alu -11 300 1 2429 89 3 0 chr1 9950466 9950769 -272242895 + AluSx SINE Alu 1 304 -8 22 0 0 0 chr1 9950780 9950802 -272242862 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr1 9950935 9950958 -272242706 + AT_rich Low_complexity Low_complexity 1 23 0 2291 112 0 3 chr1 9951255 9951560 -272242104 - AluSx SINE Alu -8 304 1 1818 171 3 7 chr1 9951890 9952177 -272241487 - AluJo SINE Alu -22 290 5 1930 167 13 10 chr1 9952461 9952772 -272240892 - AluJb SINE Alu 0 312 1 515 224 147 0 chr1 9953476 9953619 -272240045 - MIR SINE MIR -96 166 3 2551 70 3 0 chr1 9954266 9954566 -272239098 - AluSq SINE Alu -12 301 1 306 23 0 23 chr1 9954892 9954935 -272238729 + (TTTTA)n Simple_repeat Simple_repeat 2 140 0 2165 107 7 0 chr1 9954935 9955216 -272238448 - AluSx SINE Alu -29 283 1 885 116 0 8 chr1 9956267 9956396 -272237268 - AluSg/x SINE Alu -12 298 171 203 159 0 127 chr1 9956808 9956871 -272236793 + T-rich Low_complexity Low_complexity 1 55 0 2477 79 0 0 chr1 9956939 9957242 -272236422 - AluSq SINE Alu -10 303 1 1344 162 93 15 chr1 9957244 9957503 -272236161 - AluJo SINE Alu -21 291 13 421 294 96 14 chr1 9957542 9957760 -272235904 - MARNA DNA Mariner -283 303 68 1478 193 0 0 chr1 9957789 9958038 -272235626 + AluJo SINE Alu 1 249 -63 2311 75 0 0 chr1 9958038 9958349 -272235315 - AluSc SINE Alu 0 311 1 318 183 0 0 chr1 9958387 9958447 -272235217 + AluJo SINE Alu 240 299 -3 2416 69 0 0 chr1 9958594 9958883 -272234781 - AluSg1 SINE Alu -20 289 1 24 0 0 0 chr1 9959069 9959093 -272234571 + AT_rich Low_complexity Low_complexity 1 24 0 384 282 28 66 chr1 9962491 9962704 -272230960 + L2 LINE L2 2482 2686 -628 1808 162 44 0 chr1 9962968 9963142 -272230522 - AluJo SINE Alu -2 310 116 189 0 0 0 chr1 9963142 9963163 -272230501 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 1808 162 44 0 chr1 9963163 9963285 -272230379 - AluJo SINE Alu -196 116 1 812 279 70 8 chr1 9963356 9963600 -272230064 + MIR SINE MIR 2 260 -2 31 68 0 0 chr1 9963758 9963817 -272229847 + AT_rich Low_complexity Low_complexity 1 59 0 1686 158 82 0 chr1 9963875 9964154 -272229510 - AluJb SINE Alu -10 302 1 1878 184 113 31 chr1 9964191 9964403 -272229261 + Charlie4a DNA MER1_type 21 214 -1747 2368 66 3 3 chr1 9964403 9964691 -272228973 - AluY SINE Alu -23 288 1 1894 102 91 0 chr1 9964693 9964958 -272228706 - AluSc SINE Alu -18 291 3 1878 184 113 31 chr1 9964958 9965193 -272228471 + Charlie4a DNA MER1_type 214 508 0 1840 170 17 3 chr1 9965512 9965812 -272227852 - AluSx SINE Alu -8 304 1 1116 148 0 0 chr1 9966027 9966189 -272227475 + FRAM SINE Alu 1 160 -16 217 319 28 14 chr1 9967646 9967718 -272225946 + L2 LINE L2 3185 3257 -15 1372 117 73 10 chr1 9967962 9968168 -272225496 + MER20 DNA MER1_type 1 219 0 2483 76 0 13 chr1 9968305 9968620 -272225044 + AluSx SINE Alu 2 312 0 860 153 0 29 chr1 9968753 9968890 -272224774 + FLAM_C SINE Alu 1 133 0 571 210 96 48 chr1 9969550 9969717 -272223947 + MER5B DNA MER1_type 1 175 -3 1532 152 4 4 chr1 9969814 9970057 -272223607 - AluJb SINE Alu -69 243 1 306 328 15 38 chr1 9970090 9970221 -272223443 + MIR SINE MIR 80 207 -55 2329 93 3 3 chr1 9971182 9971493 -272222171 - AluSq SINE Alu -2 311 1 1562 157 75 7 chr1 9973000 9973280 -272220384 - AluJb SINE Alu -13 299 1 813 154 0 8 chr1 9974164 9974294 -272219370 - AluSx SINE Alu -2 310 182 812 117 27 0 chr1 9974292 9974403 -272219261 - AluSx SINE Alu -197 115 2 * 366 291 115 7 chr1 9974409 9974557 -272219107 + MIR SINE MIR 98 261 -1 246 186 0 17 chr1 9975621 9975680 -272217984 + L2 LINE L2 3020 3077 -195 2511 55 0 0 chr1 9978521 9978813 -272214851 + AluSg SINE Alu 1 292 -18 923 110 22 44 chr1 9979116 9979252 -272214412 - FLAM_A SINE Alu 0 133 1 203 116 23 23 chr1 9979319 9979362 -272214302 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2102 125 7 0 chr1 9979416 9979711 -272213953 + AluSq SINE Alu 1 297 -16 1627 175 10 33 chr1 9979722 9980025 -272213639 + AluJo SINE Alu 1 296 -16 2446 74 3 0 chr1 9980798 9981095 -272212569 - AluSg SINE Alu -10 300 3 2419 52 0 3 chr1 9981272 9981558 -272212106 - AluY SINE Alu -26 285 1 369 274 162 11 chr1 9981741 9981920 -272211744 - L3 LINE CR1 -78 1499 1294 258 240 0 27 chr1 9982166 9982241 -272211423 + GA-rich Low_complexity Low_complexity 4 76 0 2280 110 0 3 chr1 9983949 9984257 -272209407 + AluSc SINE Alu 1 307 -2 1690 174 6 34 chr1 9984480 9984801 -272208863 + AluJo SINE Alu 1 312 0 277 354 47 0 chr1 9984925 9985052 -272208612 + MIR SINE MIR 129 261 -1 201 39 0 0 chr1 9986205 9986231 -272207433 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 866 176 7 0 chr1 9986584 9986732 -272206932 - AluJo SINE Alu -162 150 2 723 193 0 59 chr1 9986750 9986885 -272206779 - AluJb SINE Alu -56 256 130 1751 119 8 26 chr1 9986886 9987154 -272206510 - AluSc SINE Alu 0 309 47 2291 102 3 0 chr1 9987376 9987671 -272205993 + AluSq SINE Alu 1 296 -17 1894 86 100 4 chr1 9988421 9988690 -272204974 - AluSg SINE Alu -15 295 1 2384 94 0 10 chr1 9988693 9989001 -272204663 - AluSq SINE Alu -8 305 1 306 267 69 40 chr1 9989027 9989128 -272204536 + MIR SINE MIR 8 111 -151 983 251 34 0 chr1 9989128 9989383 -272204281 - MLT1D LTR MaLR 0 505 217 2343 98 0 0 chr1 9989416 9989713 -272203951 - AluSx SINE Alu -15 297 1 1714 173 3 23 chr1 9989714 9990014 -272203650 - AluJo SINE Alu -18 294 1 829 154 8 0 chr1 9990016 9990139 -272203525 - AluJo/FLAM SINE Alu -188 124 1 698 202 54 24 chr1 9990146 9990314 -272203350 - MLT1D LTR MaLR -312 193 21 893 124 0 29 chr1 9990352 9990489 -272203175 - AluJb SINE Alu -179 133 1 1113 60 0 0 chr1 9990502 9990636 -272203028 - AluY SINE Alu -9 302 169 1142 220 24 16 chr1 9990745 9991000 -272202664 + AluJo SINE Alu 54 310 -2 920 173 0 0 chr1 9991033 9991166 -272202498 - FLAM_A SINE Alu 0 133 1 2386 83 3 0 chr1 9991232 9991532 -272202132 - AluSx SINE Alu -11 301 1 1828 103 4 8 chr1 9992169 9992421 -272201243 + AluSx SINE Alu 47 297 -15 328 355 10 44 chr1 9992432 9992635 -272201029 - L2 LINE L2 -2697 617 422 376 266 78 35 chr1 9993070 9993382 -272200282 - L1MC5 LINE L1 -1 8041 7720 230 74 0 56 chr1 9993465 9993519 -272200145 - L1MC5 LINE L1 -282 7679 7629 2277 105 0 3 chr1 9994092 9994398 -272199266 + AluSx SINE Alu 1 305 -7 270 0 0 0 chr1 9994590 9994620 -272199044 + (T)n Simple_repeat Simple_repeat 1 30 0 1332 119 0 11 chr1 9994881 9995058 -272198606 - AluSx SINE Alu -137 175 1 1084 164 45 0 chr1 9996533 9996710 -272196954 - MER58A DNA MER1_type 0 224 40 533 136 344 24 chr1 9997011 9997136 -272196528 + FAM SINE Alu 3 167 -8 23 0 0 0 chr1 9997136 9997159 -272196505 + AT_rich Low_complexity Low_complexity 1 23 0 2581 215 40 30 chr1 9997302 9997374 -272196290 + L1ME1 LINE L1 5511 5581 -585 2357 99 0 10 chr1 9997374 9997687 -272195977 - AluSg SINE Alu 0 310 1 2581 215 40 30 chr1 9997687 9998257 -272195407 + L1ME1 LINE L1 5581 6160 -6 2156 98 11 3 chr1 9998505 9998790 -272194874 - AluSq SINE Alu -24 289 3 2209 108 0 7 chr1 9998800 9999097 -272194567 - AluSg SINE Alu -15 295 1 901 237 110 4 chr1 9999330 9999558 -272194106 - MIR SINE MIR 0 262 11 2067 125 0 31 chr1 10001002 10001322 -272192342 + AluSx SINE Alu 1 310 -2 22 35 0 0 chr1 10001352 10001381 -272192283 + AT_rich Low_complexity Low_complexity 1 29 0 297 194 0 0 chr1 10002460 10002522 -272191142 - Alu SINE Alu 0 302 241 801 173 15 0 chr1 10002641 10002774 -272190890 + AluJb SINE Alu 148 282 -30 459 0 0 0 chr1 10002777 10002828 -272190836 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 314 208 0 0 chr1 10002838 10002898 -272190766 + AluJ/monomer SINE Alu 1 45 -263 975 174 6 0 chr1 10002907 10003068 -272190596 + AluJb SINE Alu 147 308 -4 2256 86 0 3 chr1 10003068 10003359 -272190305 + AluSg SINE Alu 1 290 -20 1270 277 20 48 chr1 10003721 10004179 -272189485 - L2 LINE L2 -43 3270 2826 1792 126 68 4 chr1 10004731 10005009 -272188655 - AluSx SINE Alu -3 309 14 299 239 137 58 chr1 10005308 10005513 -272188151 + L1ME LINE L1 5385 5605 -516 1524 177 11 14 chr1 10005580 10005863 -272187801 + AluJo SINE Alu 1 282 -30 702 165 0 9 chr1 10006282 10006391 -272187273 + Tigger3(Golem) DNA MER2_type 1 108 -2921 505 76 51 25 chr1 10006382 10006461 -272187203 + Tigger3(Golem) DNA MER2_type 2278 2358 -671 * 1708 142 4 8 chr1 10006584 10006852 -272186812 - AluJo SINE Alu -45 267 1 366 271 57 8 chr1 10006852 10006974 -272186690 + MIR SINE MIR 48 175 -87 2002 119 17 3 chr1 10007280 10007574 -272186090 - AluSx SINE Alu -14 298 1 1045 232 94 80 chr1 10007757 10008330 -272185334 - MLT1G1 LTR MaLR -14 581 1 588 227 110 0 chr1 10008460 10008623 -272185041 - MIR SINE MIR -67 195 15 275 233 33 0 chr1 10008664 10008724 -272184940 - L2 LINE L2 0 3313 3252 23 54 0 0 chr1 10008779 10008816 -272184848 + AT_rich Low_complexity Low_complexity 1 37 0 1820 130 17 17 chr1 10008849 10009148 -272184516 - AluSx SINE Alu -13 299 1 2191 57 19 0 chr1 10009210 10009472 -272184192 + LTR5 LTR ERVK 1 267 -702 4706 121 81 95 chr1 10009483 10010729 -272182935 - pTR5 LTR ERV1 -143 2295 753 5655 84 6 0 chr1 10010729 10011442 -272182222 + LTR5 LTR ERVK 253 969 0 2239 47 18 11 chr1 10011442 10011716 -272181948 - AluSp SINE Alu -37 276 1 365 250 150 19 chr1 10011804 10011964 -272181700 + MIR SINE MIR 13 193 -69 818 193 23 17 chr1 10012125 10012301 -272181363 - AluJb SINE Alu -10 302 126 2122 127 3 3 chr1 10012336 10012627 -272181037 - AluSx SINE Alu -21 291 1 241 342 54 0 chr1 10012792 10012941 -272180723 - MIR SINE MIR -74 188 32 1837 164 7 7 chr1 10013386 10013690 -272179974 + AluJo SINE Alu 1 304 -8 21 57 0 0 chr1 10014226 10014261 -272179403 + GC_rich Low_complexity Low_complexity 1 35 0 26 0 0 0 chr1 10014481 10014507 -272179157 + GC_rich Low_complexity Low_complexity 1 26 0 448 258 113 42 chr1 10015176 10015389 -272178275 - L1MC4 LINE L1 -6 8036 7809 2383 88 7 0 chr1 10015389 10015694 -272177970 + AluSx SINE Alu 1 307 -5 959 108 31 0 chr1 10016643 10016772 -272176892 - AluSq/x SINE Alu -180 133 1 340 198 159 57 chr1 10016873 10017030 -272176634 + L2 LINE L2 3136 3308 -5 2243 105 0 3 chr1 10018003 10018298 -272175366 - AluSg SINE Alu -16 294 1 1563 158 65 24 chr1 10019535 10019826 -272173838 - AluJo SINE Alu -7 305 3 2392 80 3 3 chr1 10020231 10020532 -272173132 - AluSq SINE Alu -12 301 1 879 85 51 0 chr1 10020532 10020650 -272173014 - AluSq/x SINE Alu -177 136 13 286 103 0 0 chr1 10020650 10020689 -272172975 - Alu SINE Alu -260 39 1 226 204 78 97 chr1 10022683 10022786 -272170878 + L1ME4a LINE L1 5973 6073 -48 1443 191 40 7 chr1 10024129 10024401 -272169263 - AluJb SINE Alu -30 282 2 597 146 0 3 chr1 10024588 10024808 -272168856 + AluJ SINE Alu 1 292 -20 26 30 0 0 chr1 10024911 10024944 -272168720 + AT_rich Low_complexity Low_complexity 1 33 0 517 279 122 13 chr1 10025258 10025487 -272168177 - MIR SINE MIR 0 262 9 204 178 0 0 chr1 10025696 10025741 -272167923 - L2 LINE L2 -5 3308 3264 21 36 0 0 chr1 10026281 10026309 -272167355 + AT_rich Low_complexity Low_complexity 1 28 0 2168 133 0 0 chr1 10026346 10026647 -272167017 + AluSx SINE Alu 1 301 -11 1701 139 100 0 chr1 10026749 10027034 -272166630 + AluSq SINE Alu 1 311 0 237 288 24 16 chr1 10027710 10027835 -272165829 + GA-rich Low_complexity Low_complexity 4 129 0 2357 84 7 0 chr1 10028349 10028646 -272165018 + AluSx SINE Alu 1 299 -13 615 249 62 10 chr1 10028695 10028888 -272164776 + MER106A DNA MER1_type 1 203 -33 2208 96 10 7 chr1 10029019 10029310 -272164354 - AluSq SINE Alu -21 292 1 209 312 32 21 chr1 10029690 10029783 -272163881 + MIR SINE MIR 46 139 -123 2338 95 0 3 chr1 10029906 10030201 -272163463 - AluSg SINE Alu -16 294 1 1112 194 197 13 chr1 10030234 10030544 -272163120 + L1MC4 LINE L1 6757 7123 -919 357 89 0 0 chr1 10030681 10030726 -272162938 - Alu SINE Alu -258 45 1 705 119 68 0 chr1 10030730 10030848 -272162816 + FAM SINE Alu 1 46 -3 823 255 41 28 chr1 10030853 10030948 -272162716 + L1MC4 LINE L1 7130 7222 -820 1797 160 0 25 chr1 10030948 10031267 -272162397 + AluJb SINE Alu 1 311 -1 823 255 41 28 chr1 10031267 10031489 -272162175 + L1MC4 LINE L1 7222 7451 -591 941 199 6 0 chr1 10031502 10031663 -272162001 - AluJb SINE Alu -14 298 137 2399 106 0 0 chr1 10031674 10031976 -272161688 - AluSx SINE Alu -10 302 1 545 247 210 49 chr1 10031976 10032274 -272161390 + L1MC4 LINE L1 7451 7832 -210 2274 111 13 0 chr1 10032274 10032581 -272161083 + AluSx SINE Alu 1 311 -1 545 247 210 49 chr1 10032581 10032687 -272160977 + L1MC4 LINE L1 7832 7920 -122 1880 173 0 0 chr1 10033030 10033342 -272160322 + AluJb SINE Alu 1 312 0 1943 100 48 0 chr1 10033568 10033862 -272159802 + AluSq SINE Alu 1 307 0 2615 60 0 0 chr1 10033900 10034202 -272159462 + AluY SINE Alu 1 302 -9 216 281 49 0 chr1 10034302 10034384 -272159280 - MIR SINE MIR -24 238 153 2006 146 7 7 chr1 10034384 10034693 -272158971 + AluSx SINE Alu 1 309 -3 209 255 0 0 chr1 10034817 10034868 -272158796 - L2 LINE L2 0 3313 3263 1093 292 135 69 chr1 10035084 10036238 -272157426 - L2 LINE L2 -363 2951 1674 2172 110 20 13 chr1 10036238 10036537 -272157127 + AluSx SINE Alu 1 301 -11 1093 292 135 69 chr1 10036537 10036874 -272156790 - L2 LINE L2 -1640 1674 1361 1221 212 0 9 chr1 10037150 10037372 -272156292 + MER58A DNA MER1_type 3 222 -2 898 201 27 5 chr1 10037383 10037567 -272156097 + MER5A DNA MER1_type 1 188 -1 196 303 66 0 chr1 10037598 10037674 -272155990 - L2 LINE L2 -74 3239 3159 668 266 128 14 chr1 10037776 10038104 -272155560 - L2 LINE L2 -300 2972 2590 2271 116 7 0 chr1 10040139 10040449 -272153215 + AluSx SINE Alu 1 312 0 1719 174 26 3 chr1 10040971 10041275 -272152389 - 7SLRNA srpRNA srpRNA 0 320 10 233 215 27 87 chr1 10044592 10044741 -272148923 + A-rich Low_complexity Low_complexity 2 141 0 410 52 0 143 chr1 10046023 10046063 -272147601 + MER41B LTR ERV1 482 507 -128 2247 106 20 0 chr1 10046063 10046365 -272147299 - AluSx SINE Alu -4 308 1 410 52 0 143 chr1 10046365 10046401 -272147263 + MER41B LTR ERV1 507 547 -88 446 237 203 0 chr1 10046577 10046695 -272146969 - FLAM_A SINE Alu 0 142 1 2117 113 0 0 chr1 10047480 10047794 -272145870 - AluSx SINE Alu 0 314 1 21 0 0 0 chr1 10048143 10048164 -272145500 + AT_rich Low_complexity Low_complexity 1 21 0 234 182 0 0 chr1 10048612 10048678 -272144986 + T-rich Low_complexity Low_complexity 1 66 0 988 0 0 0 chr1 10048678 10048783 -272144881 - U6 snRNA snRNA -2 105 1 440 106 0 0 chr1 10048808 10048874 -272144790 - Alu SINE Alu -251 67 2 21 0 0 0 chr1 10050881 10050902 -272142762 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr1 10052861 10052886 -272140778 + AT_rich Low_complexity Low_complexity 1 25 0 1952 134 29 0 chr1 10052886 10053162 -272140502 - AluSx SINE Alu -27 285 2 2281 94 10 3 chr1 10054057 10054355 -272139309 + AluSc SINE Alu 1 300 -9 2378 71 7 7 chr1 10056025 10056320 -272137344 - AluY SINE Alu -16 295 1 1791 83 26 0 chr1 10056874 10057104 -272136560 - AluSc SINE Alu -18 291 56 1182 108 0 6 chr1 10057106 10057273 -272136391 + AluY SINE Alu 139 304 -7 926 118 7 0 chr1 10057453 10057588 -272136076 + L1PA8 LINE L1 6032 6167 -5 198 91 0 0 chr1 10057588 10057621 -272136043 + (TTTAA)n Simple_repeat Simple_repeat 1 33 0 556 251 56 101 chr1 10057696 10057838 -272135826 - L2 LINE L2 0 3313 3166 2051 135 0 0 chr1 10057838 10058147 -272135517 - AluSx SINE Alu 0 309 1 556 251 56 101 chr1 10058147 10058361 -272135303 - L2 LINE L2 -147 3166 2972 24 0 0 0 chr1 10059015 10059039 -272134625 + AT_rich Low_complexity Low_complexity 1 24 0 406 186 0 0 chr1 10059515 10059585 -272134079 + AluJ/FRAM SINE Alu 224 293 -9 1245 153 6 0 chr1 10060325 10060508 -272133156 + AluSg/x SINE Alu 70 253 -57 2361 102 0 0 chr1 10061410 10061704 -272131960 + AluSx SINE Alu 1 294 -18 2193 110 7 19 chr1 10062865 10063036 -272130628 - AluSx SINE Alu -8 304 137 2092 129 10 7 chr1 10063036 10063345 -272130319 - AluSx SINE Alu -2 310 1 2193 110 7 19 chr1 10063345 10063481 -272130183 - AluSx SINE Alu -175 137 1 999 157 7 7 chr1 10063503 10063656 -272130008 - FRAM SINE Alu -23 153 1 2620 52 0 3 chr1 10064517 10064824 -272128840 - AluY SINE Alu -5 306 1 320 286 129 7 chr1 10065046 10065186 -272128478 - L3 LINE CR1 -127 1450 1294 258 240 0 27 chr1 10065432 10065507 -272128157 + GA-rich Low_complexity Low_complexity 4 76 0 2293 110 0 3 chr1 10067215 10067523 -272126141 + AluSc SINE Alu 1 307 -2 1049 177 0 31 chr1 10067746 10067938 -272125726 + AluJo SINE Alu 1 186 -126 1078 153 139 0 chr1 10068046 10068248 -272125416 + AluJo SINE Alu 63 292 -20 653 196 8 23 chr1 10068337 10068470 -272125194 - FLAM_C SINE Alu -1 132 2 2135 112 0 0 chr1 10068479 10068756 -272124908 - AluSx SINE Alu -15 297 21 2227 88 13 13 chr1 10069065 10069370 -272124294 - AluSp SINE Alu -8 305 1 249 277 234 7 chr1 10069906 10070047 -272123617 - MIR SINE MIR -66 196 24 2524 80 0 0 chr1 10070988 10071299 -272122365 - AluY SINE Alu 0 311 1 724 135 35 28 chr1 10071332 10071473 -272122191 + FLAM_C SINE Alu 2 143 0 22 0 0 0 chr1 10071872 10071894 -272121770 + AT_rich Low_complexity Low_complexity 1 22 0 3623 126 34 56 chr1 10072380 10072391 -272121273 + Tigger3(Golem) DNA MER2_type 2386 2396 -632 2228 114 0 19 chr1 10072391 10072708 -272120956 + AluSx SINE Alu 1 311 -1 3623 126 34 56 chr1 10072708 10072773 -272120891 + Tigger3(Golem) DNA MER2_type 2396 2461 -567 2141 112 3 7 chr1 10072773 10073069 -272120595 - AluSq SINE Alu -12 301 7 3623 126 34 56 chr1 10073069 10073648 -272120016 + Tigger3(Golem) DNA MER2_type 2461 3027 -1 1518 142 0 124 chr1 10073709 10073858 -272119806 + AluJb SINE Alu 1 88 -224 2154 112 10 0 chr1 10073858 10074152 -272119512 + AluSx SINE Alu 1 297 -15 1518 142 0 124 chr1 10074152 10074332 -272119332 + AluJb SINE Alu 88 289 -23 21 0 0 0 chr1 10074403 10074424 -272119240 + AT_rich Low_complexity Low_complexity 1 21 0 182 319 83 14 chr1 10074798 10074870 -272118794 + L2 LINE L2 3127 3203 -69 189 175 0 0 chr1 10075328 10075368 -272118296 + (CA)n Simple_repeat Simple_repeat 2 41 0 1922 143 0 4 chr1 10075681 10075961 -272117703 + AluSx SINE Alu 1 279 -33 1091 93 0 70 chr1 10076074 10076246 -272117418 - AluSq SINE Alu -53 260 101 655 138 0 0 chr1 10076300 10076394 -272117270 + AluSg SINE Alu 2 95 -215 188 35 35 0 chr1 10076394 10076423 -272117241 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2238 110 0 0 chr1 10076515 10076807 -272116857 + AluSx SINE Alu 1 292 -20 30 0 0 0 chr1 10076807 10076837 -272116827 + AT_rich Low_complexity Low_complexity 1 30 0 180 200 0 0 chr1 10076978 10077018 -272116646 + (TA)n Simple_repeat Simple_repeat 1 40 0 1480 171 23 63 chr1 10077418 10077717 -272115947 + AluJb SINE Alu 1 287 -25 241 286 16 0 chr1 10077793 10077856 -272115808 + L2 LINE L2 3234 3297 -16 2079 132 0 3 chr1 10077916 10078219 -272115445 - AluSx SINE Alu -10 302 1 2078 151 0 0 chr1 10078278 10078583 -272115081 + AluSx SINE Alu 1 305 -7 2585 59 0 3 chr1 10078846 10079152 -272114512 - AluY SINE Alu -6 305 1 690 296 37 21 chr1 10080030 10080092 -272113572 - MIR SINE MIR 0 262 203 1836 166 0 7 chr1 10080092 10080388 -272113276 - AluJo SINE Alu -18 294 1 690 296 37 21 chr1 10080388 10080568 -272113096 - MIR SINE MIR -59 203 16 2052 125 0 20 chr1 10080722 10081025 -272112639 + AluSq SINE Alu 1 297 -16 1808 172 0 3 chr1 10081035 10081364 -272112300 + AluJb SINE Alu 1 328 0 2220 102 0 0 chr1 10081407 10081712 -272111952 + AluSx SINE Alu 1 305 0 2157 119 3 0 chr1 10081922 10082216 -272111448 - AluSq SINE Alu -18 295 1 2045 120 10 13 chr1 10082480 10082788 -272110876 - AluSx SINE Alu -5 307 1 1276 214 56 4 chr1 10082844 10083111 -272110553 - AluJo SINE Alu -31 281 1 1203 139 0 0 chr1 10083155 10083327 -272110337 + AluSg/x SINE Alu 124 295 -15 876 163 0 0 chr1 10083560 10083689 -272109975 + FLAM_C SINE Alu 3 131 -12 1852 157 3 7 chr1 10083750 10084049 -272109615 - AluJo SINE Alu -14 298 1 432 245 185 0 chr1 10084829 10084980 -272108684 + L2 LINE L2 2449 2627 -687 1796 178 0 18 chr1 10085168 10085478 -272108186 + AluJb SINE Alu 1 305 0 1940 110 88 25 chr1 10085578 10085895 -272107769 + MER1B DNA MER1_type 1 337 0 197 217 0 67 chr1 10085987 10086047 -272107617 + MIR SINE MIR 120 175 -87 417 238 151 101 chr1 10086101 10086504 -272107160 - L2 LINE L2 0 3313 2784 1850 153 0 14 chr1 10086504 10086798 -272106866 + AluSx SINE Alu 1 290 -22 417 238 151 101 chr1 10086798 10086878 -272106786 - L2 LINE L2 -529 2784 2710 1263 284 152 10 chr1 10087029 10087621 -272106043 - L2 LINE L2 -647 2667 1992 2610 44 0 0 chr1 10088551 10088847 -272104817 + AluY SINE Alu 1 296 -15 2526 71 10 0 chr1 10088851 10089161 -272104503 + AluSp SINE Alu 1 313 0 407 300 71 29 chr1 10089778 10089948 -272103716 + MIR SINE MIR 20 196 -66 251 179 0 18 chr1 10090084 10090140 -272103524 - AluSp/q SINE Alu 0 303 249 2340 90 3 13 chr1 10090147 10090457 -272103207 - AluSx SINE Alu -5 307 1 381 89 0 0 chr1 10090743 10090785 -272102879 + (TC)n Simple_repeat Simple_repeat 2 46 -11 279 0 0 0 chr1 10090785 10090816 -272102848 + (CA)n Simple_repeat Simple_repeat 1 31 0 381 89 0 0 chr1 10090816 10090829 -272102835 + (TC)n Simple_repeat Simple_repeat 45 57 0 321 255 133 0 chr1 10091193 10091291 -272102373 + MIR SINE MIR 80 190 -72 2142 113 0 3 chr1 10091296 10091601 -272102063 - AluSx SINE Alu 0 304 1 1951 139 0 17 chr1 10091995 10092132 -272101532 + AluJb SINE Alu 1 139 -171 2244 98 10 7 chr1 10092132 10092428 -272101236 + AluSx SINE Alu 1 297 -15 1951 139 0 17 chr1 10092428 10092605 -272101059 + AluJb SINE Alu 139 310 0 2424 84 0 0 chr1 10093048 10093345 -272100319 - AluY SINE Alu -14 297 1 1981 169 68 39 chr1 10093530 10093912 -272099752 + MSTB LTR MaLR 1 397 -29 1785 82 0 9 chr1 10093912 10094144 -272099520 + MER30 DNA MER1_type 1 230 0 1981 169 68 39 chr1 10094144 10094175 -272099489 + MSTB LTR MaLR 397 426 0 2341 82 0 0 chr1 10094190 10094502 -272099162 - AluSc SINE Alu 0 312 1 211 172 35 0 chr1 10094536 10094594 -272099070 + A-rich Low_complexity Low_complexity 4 63 0 2060 127 0 3 chr1 10094598 10094913 -272098751 + AluJb SINE Alu 1 314 0 688 262 139 36 chr1 10095039 10095445 -272098219 + MLT1G1 LTR MaLR 1 496 -71 2210 91 20 17 chr1 10095445 10095741 -272097923 - AluSx SINE Alu -15 297 1 688 262 139 36 chr1 10095741 10095791 -272097873 + MLT1G1 LTR MaLR 496 539 -28 240 228 30 30 chr1 10095793 10095894 -272097770 + MLT1G1-int LTR MaLR 1 101 -1270 340 338 31 14 chr1 10095902 10096124 -272097540 + MLT1G1-int LTR MaLR 290 515 -856 28 0 0 0 chr1 10096129 10096157 -272097507 + AT_rich Low_complexity Low_complexity 1 28 0 2370 87 3 0 chr1 10096236 10096536 -272097128 + AluSx SINE Alu 1 301 -11 200 97 65 16 chr1 10096784 10096846 -272096818 + (TTATA)n Simple_repeat Simple_repeat 5 69 0 302 277 8 50 chr1 10096966 10097019 -272096645 + MIR SINE MIR 148 202 -60 2158 109 0 0 chr1 10097019 10097338 -272096326 + AluY SINE Alu 1 319 0 302 277 8 50 chr1 10097338 10097402 -272096262 + MIR SINE MIR 202 261 -1 347 294 37 37 chr1 10097470 10097606 -272096058 - MIR3 SINE MIR -5 203 68 392 308 77 16 chr1 10097785 10097967 -272095697 - MIR SINE MIR -52 210 18 1534 102 9 14 chr1 10098062 10098278 -272095386 + AluSg/x SINE Alu 74 288 -22 2007 108 0 0 chr1 10098902 10099162 -272094502 + AluSc SINE Alu 29 288 -21 2315 106 0 0 chr1 10099454 10099755 -272093909 + AluSg SINE Alu 2 302 -8 2337 96 10 0 chr1 10100091 10100392 -272093272 + AluSx SINE Alu 1 304 -8 1959 106 26 70 chr1 10100401 10100713 -272092951 + AluSx SINE Alu 1 298 -14 288 217 0 0 chr1 10101545 10101614 -272092050 - AluSp/q SINE Alu -2 301 233 1330 178 82 4 chr1 10101746 10101977 -272091687 - AluJo SINE Alu -63 249 1 2570 53 0 37 chr1 10101992 10102313 -272091351 - AluY SINE Alu -2 309 1 251 241 86 0 chr1 10102450 10102508 -272091156 + L2 LINE L2 3208 3270 -2 370 216 198 30 chr1 10102526 10102693 -272090971 - L1M4 LINE L1 -795 5351 5157 240 321 84 65 chr1 10102864 10103185 -272090479 + L2 LINE L2 2328 2654 -660 470 241 153 76 chr1 10103475 10103670 -272089994 + L1MC5 LINE L1 6920 7098 -863 2126 114 0 16 chr1 10103670 10103985 -272089679 - AluSx SINE Alu -2 310 1 470 241 153 76 chr1 10103985 10104069 -272089595 + L1MC5 LINE L1 7098 7174 -787 1469 120 5 0 chr1 10104069 10104285 -272089379 - AluSq SINE Alu -20 293 77 470 241 153 76 chr1 10104285 10104506 -272089158 + L1MC5 LINE L1 7174 7460 -501 26 0 0 0 chr1 10104657 10104683 -272088981 + AT_rich Low_complexity Low_complexity 1 26 0 225 51 0 0 chr1 10104932 10104971 -272088693 + Alu SINE Alu 128 166 0 312 226 21 32 chr1 10104992 10105010 -272088654 + L1MC5 LINE L1 7568 7585 -376 1889 133 7 13 chr1 10105010 10105319 -272088345 - AluJb SINE Alu -5 307 1 312 226 21 32 chr1 10105319 10105393 -272088271 + L1MC5 LINE L1 7585 7659 -302 24 0 0 0 chr1 10105984 10106008 -272087656 + AT_rich Low_complexity Low_complexity 1 24 0 1061 182 107 36 chr1 10106522 10106802 -272086862 - AluJb SINE Alu -2 300 1 2242 158 0 0 chr1 10106829 10107165 -272086499 + MER1B DNA MER1_type 2 337 0 1400 191 14 27 chr1 10107282 10107575 -272086089 + AluJo SINE Alu 1 289 -23 2135 93 0 10 chr1 10107590 10107890 -272085774 + AluSg SINE Alu 1 297 -13 800 178 7 27 chr1 10107912 10108058 -272085606 + AluJb SINE Alu 13 155 -157 2300 91 3 0 chr1 10108162 10108469 -272085195 + AluSc SINE Alu 1 308 -1 1707 121 21 25 chr1 10108719 10109033 -272084631 - AluSg SINE Alu 0 313 1 250 310 109 11 chr1 10109502 10109686 -272083978 + L2 LINE L2 2681 2882 -432 1077 134 0 0 chr1 10110013 10110170 -272083494 + AluSg/x SINE Alu 125 281 -31 2219 112 0 0 chr1 10110607 10110910 -272082754 + AluSx SINE Alu 1 303 -9 2034 140 0 0 chr1 10111042 10111349 -272082315 + AluSq SINE Alu 1 307 -6 557 168 103 52 chr1 10111350 10111505 -272082159 - AluJo SINE Alu -36 276 114 590 0 14 0 chr1 10111563 10111633 -272082031 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 1424 186 10 35 chr1 10111633 10111783 -272081881 - AluJo SINE Alu -29 283 142 2357 67 3 7 chr1 10111783 10112080 -272081584 - AluSp SINE Alu -13 300 5 1424 186 10 35 chr1 10112080 10112219 -272081445 - AluJo SINE Alu -170 142 1 2119 103 7 7 chr1 10112229 10112530 -272081134 - AluSp SINE Alu -12 301 1 2192 92 7 0 chr1 10112532 10112825 -272080839 - AluSp SINE Alu -18 295 1 22 35 0 0 chr1 10113052 10113081 -272080583 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr1 10113139 10113162 -272080502 + AT_rich Low_complexity Low_complexity 1 23 0 2177 112 0 0 chr1 10113284 10113579 -272080085 + AluSx SINE Alu 1 295 -17 910 275 37 68 chr1 10114015 10114388 -272079276 - L2 LINE L2 -5 3308 2948 1750 120 88 0 chr1 10114388 10114671 -272078993 + AluSx SINE Alu 1 308 -4 910 275 37 68 chr1 10114671 10114726 -272078938 - L2 LINE L2 -365 2948 2893 2323 103 0 0 chr1 10114731 10115043 -272078621 + AluSx SINE Alu 1 312 0 762 198 78 12 chr1 10115851 10116018 -272077646 + MIR SINE MIR 69 246 -16 1630 164 17 27 chr1 10116156 10116454 -272077210 + AluJb SINE Alu 1 295 -17 2389 66 3 0 chr1 10116529 10116831 -272076833 + AluSp SINE Alu 1 303 -10 323 23 23 0 chr1 10116831 10116875 -272076789 + (TA)n Simple_repeat Simple_repeat 1 45 0 2166 114 0 0 chr1 10117126 10117416 -272076248 + AluSg SINE Alu 3 292 -18 2307 94 0 0 chr1 10117417 10117725 -272075939 + AluSg SINE Alu 1 308 -2 1289 204 68 11 chr1 10117870 10118150 -272075514 - AluJo SINE Alu -6 296 1 326 238 0 10 chr1 10119080 10119164 -272074500 - L1MC4 LINE L1 -1339 6983 1984 1148 151 0 33 chr1 10119188 10119400 -272074264 - AluJo SINE Alu -103 209 5 32 0 0 0 chr1 10121169 10121201 -272072463 + GC_rich Low_complexity Low_complexity 1 32 0 2118 98 14 0 chr1 10122772 10123068 -272070596 - AluSq SINE Alu -13 300 1 1997 103 3 40 chr1 10123350 10123671 -272069993 + AluSx SINE Alu 3 311 -1 225 235 0 0 chr1 10124021 10124072 -272069592 + L1 LINE L1 4284 4334 -1812 1448 152 78 19 chr1 10124103 10124372 -272069292 - AluJb SINE Alu -27 285 1 1707 164 6 35 chr1 10124419 10124737 -272068927 + AluJo SINE Alu 1 309 -3 2037 96 0 4 chr1 10124771 10125052 -272068612 + AluSx SINE Alu 20 299 -13 381 170 2 5 chr1 10125388 10125484 -272068180 - AluS SINE Alu 0 301 228 216 97 0 0 chr1 10125509 10125540 -272068124 + (ATTG)n Simple_repeat Simple_repeat 2 32 0 1968 104 0 17 chr1 10125542 10125829 -272067835 - AluSx SINE Alu -30 282 1 1787 137 0 65 chr1 10125849 10126040 -272067624 - AluSx SINE Alu -11 301 138 2048 122 3 0 chr1 10126040 10126335 -272067329 + AluSp SINE Alu 1 296 -17 1787 137 0 65 chr1 10126335 10126465 -272067199 - AluSx SINE Alu -174 138 1 1964 110 0 14 chr1 10126523 10126814 -272066850 - AluSg SINE Alu -14 296 10 938 202 0 0 chr1 10126878 10127046 -272066618 + FAM SINE Alu 2 169 -6 1851 154 3 0 chr1 10127071 10127363 -272066301 + AluSq SINE Alu 1 293 -20 1226 142 5 10 chr1 10128119 10128316 -272065348 - AluSx SINE Alu -91 221 26 1629 129 30 113 chr1 10128572 10128661 -272065003 + MER7A DNA MER2_type 2 97 -2941 2175 98 0 0 chr1 10128661 10128948 -272064716 + AluSg SINE Alu 1 287 -23 1629 129 30 113 chr1 10128948 10129229 -272064435 + MER7A DNA MER2_type 97 339 -7 1502 171 33 0 chr1 10130072 10130346 -272063318 + AluJo SINE Alu 1 283 -29 208 267 44 67 chr1 10130412 10130502 -272063162 - MIR SINE MIR -58 204 117 332 231 17 34 chr1 10130504 10130612 -272063052 + L1ME4a LINE L1 5743 5850 -271 798 169 0 22 chr1 10130612 10130748 -272062916 + FLAM_C SINE Alu 1 133 0 1945 125 4 0 chr1 10130968 10131269 -272062395 + AluSx SINE Alu 1 302 0 2038 117 0 19 chr1 10131274 10131410 -272062254 + AluSg SINE Alu 1 138 -172 2244 86 0 3 chr1 10131410 10131701 -272061963 + AluY SINE Alu 1 290 -21 2038 117 0 19 chr1 10131701 10131880 -272061784 + AluSg SINE Alu 138 310 0 388 297 128 7 chr1 10132094 10132242 -272061422 + L1ME4a LINE L1 5874 6039 -82 1328 137 11 48 chr1 10132274 10132544 -272061120 + AluJb SINE Alu 53 312 0 834 152 7 7 chr1 10132880 10133018 -272060646 - AluJo SINE Alu -174 138 1 1996 139 0 0 chr1 10133038 10133341 -272060323 - AluSq SINE Alu -10 303 1 1868 153 0 10 chr1 10133405 10133712 -272059952 - AluJb SINE Alu -4 308 5 187 173 77 58 chr1 10135035 10135087 -272058577 + MIR SINE MIR 33 85 -123 2073 102 0 3 chr1 10135130 10135449 -272058215 - AluSg SINE Alu 0 318 1 2273 92 0 3 chr1 10135556 10135861 -272057803 - AluSq SINE Alu -9 304 1 498 49 0 0 chr1 10135986 10136047 -272057617 - AluY SINE Alu -256 62 2 412 156 46 0 chr1 10136380 10136489 -272057175 + (TG)n Simple_repeat Simple_repeat 2 115 0 852 254 95 13 chr1 10136724 10136956 -272056708 + MLT1G1 LTR MaLR 2 252 -343 356 202 11 34 chr1 10136961 10137050 -272056614 + MLT1H LTR MaLR 463 549 0 999 256 151 32 chr1 10137079 10137557 -272056107 - L2 LINE L2 -19 3294 2779 811 168 0 126 chr1 10137562 10137752 -272055912 - FRAM SINE Alu 0 166 1 1921 118 13 25 chr1 10137775 10138090 -272055574 - AluSq SINE Alu -1 312 2 886 173 6 6 chr1 10138093 10138249 -272055415 - AluJb SINE Alu -22 290 135 2384 92 0 6 chr1 10138255 10138569 -272055095 - AluSx SINE Alu 0 312 1 1349 250 81 40 chr1 10138572 10138760 -272054904 - L2 LINE L2 -608 2706 2527 2168 101 0 0 chr1 10138760 10139056 -272054608 - AluSx SINE Alu -16 296 1 1349 250 81 40 chr1 10139056 10139363 -272054301 - L2 LINE L2 -787 2527 2191 186 123 31 138 chr1 10139362 10139427 -272054237 + MIR3 SINE MIR 123 180 -28 * 221 270 60 30 chr1 10139563 10139604 -272054060 + MIR SINE MIR 159 197 -65 2479 54 0 0 chr1 10139604 10139901 -272053763 + AluY SINE Alu 1 297 -14 221 270 60 30 chr1 10139901 10139959 -272053705 + MIR SINE MIR 197 261 -1 1991 116 3 44 chr1 10140054 10140373 -272053291 + AluSx SINE Alu 1 306 -6 2135 104 0 0 chr1 10141171 10141460 -272052204 - AluSq SINE Alu -24 289 1 363 98 0 0 chr1 10141464 10141525 -272052139 + (TA)n Simple_repeat Simple_repeat 1 61 0 2173 79 10 3 chr1 10141525 10141817 -272051847 - AluSx SINE Alu -18 294 1 465 297 54 7 chr1 10145343 10145491 -272048173 + MIR SINE MIR 16 170 -92 240 167 71 0 chr1 10145742 10145784 -272047880 + MSTB LTR MaLR 382 426 0 3660 166 20 97 chr1 10145784 10145866 -272047798 + L1MB4 LINE L1 5221 5308 -872 2309 89 0 13 chr1 10145866 10146179 -272047485 + AluSc SINE Alu 1 309 0 3660 166 20 97 chr1 10146179 10147128 -272046536 + L1MB4 LINE L1 5308 6180 0 2379 45 0 0 chr1 10147252 10147583 -272046081 - AluY SINE Alu 0 311 1 2313 43 0 0 chr1 10147946 10148226 -272045438 - AluY SINE Alu -31 280 1 189 0 0 0 chr1 10148287 10148308 -272045356 + (A)n Simple_repeat Simple_repeat 1 21 0 2487 59 0 3 chr1 10148909 10149213 -272044451 - AluSq SINE Alu -10 303 1 2134 104 3 0 chr1 10149219 10149518 -272044146 - AluSg SINE Alu -10 300 1 2365 37 7 13 chr1 10150137 10150435 -272043229 - AluY SINE Alu -15 296 1 1650 159 97 0 chr1 10150537 10150827 -272042837 - MER7A DNA MER2_type -29 317 2 772 273 30 0 chr1 10151106 10151304 -272042360 + MIR SINE MIR 6 209 -53 207 100 0 0 chr1 10151720 10151750 -272041914 + (CTTA)n Simple_repeat Simple_repeat 2 31 0 2171 105 0 3 chr1 10151750 10152025 -272041639 - AluSg SINE Alu -27 283 8 749 169 70 7 chr1 10152025 10152167 -272041497 - AluJb SINE Alu -25 287 137 2137 116 20 0 chr1 10153606 10153899 -272039765 - AluSx SINE Alu -13 299 1 2554 68 0 0 chr1 10154712 10155020 -272038644 - AluY SINE Alu -2 309 2 2355 87 7 0 chr1 10155744 10156042 -272037622 + AluSc SINE Alu 2 301 -8 2292 74 11 0 chr1 10156157 10156474 -272037190 - AluSp SINE Alu 0 320 1 2185 119 0 14 chr1 10156491 10156649 -272037015 - AluSx SINE Alu -21 291 137 2284 109 0 10 chr1 10156649 10156660 -272037004 - AluSx SINE Alu -3 309 299 270 0 0 0 chr1 10156660 10156690 -272036974 + (TG)n Simple_repeat Simple_repeat 1 30 0 2284 109 0 10 chr1 10156690 10156990 -272036674 - AluSx SINE Alu -13 299 1 2185 119 0 14 chr1 10156990 10157126 -272036538 - AluSx SINE Alu -175 137 1 1310 269 199 11 chr1 10157691 10158593 -272035071 - L2 LINE L2 -55 3258 2179 287 302 19 99 chr1 10158593 10158809 -272034855 + MER20B DNA MER1_type 19 218 -1 234 222 81 30 chr1 10158810 10158909 -272034755 - L2 LINE L2 -1131 2183 2080 730 200 7 7 chr1 10159118 10159258 -272034406 + FRAM SINE Alu 1 140 -36 2186 124 0 22 chr1 10159258 10159573 -272034091 - AluSx SINE Alu -4 308 1 32 33 0 33 chr1 10159586 10159605 -272034059 + AT_rich Low_complexity Low_complexity 1 19 -40 1508 130 188 0 chr1 10159605 10159868 -272033796 + AluSx SINE Alu 1 308 0 32 33 0 33 chr1 10159868 10159908 -272033756 + AT_rich Low_complexity Low_complexity 19 59 0 2335 85 0 3 chr1 10159949 10160244 -272033420 - AluSc SINE Alu -15 294 1 724 143 0 0 chr1 10160258 10160363 -272033301 - U6 snRNA snRNA -1 106 2 879 179 21 74 chr1 10160364 10160554 -272033110 + AluJo SINE Alu 102 281 -31 32 43 0 0 chr1 10160554 10160600 -272033064 + AT_rich Low_complexity Low_complexity 1 46 0 1399 96 50 29 chr1 10160769 10161009 -272032655 + L1PA16 LINE L1 5922 6166 0 1960 120 0 18 chr1 10161026 10161161 -272032503 + AluSq SINE Alu 3 139 -174 2267 108 0 0 chr1 10161161 10161466 -272032198 + AluY SINE Alu 3 307 -4 1960 120 0 18 chr1 10161466 10161613 -272032051 + AluSq SINE Alu 139 280 -33 544 247 74 11 chr1 10161623 10161813 -272031851 - L1MEd LINE L1 -5016 1103 902 2068 143 7 0 chr1 10161813 10162127 -272031537 - AluSx SINE Alu 0 316 1 2072 109 39 3 chr1 10162151 10162434 -272031230 - AluSx SINE Alu -17 295 3 2088 124 3 0 chr1 10162815 10163098 -272030566 + AluSx SINE Alu 1 284 -28 531 138 0 129 chr1 10163729 10163774 -272029890 - L1MB5 LINE L1 0 6174 6125 243 0 0 0 chr1 10163774 10163801 -272029863 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 2225 101 0 3 chr1 10163801 10164087 -272029577 - AluSq SINE Alu -28 285 1 531 138 0 129 chr1 10164087 10164156 -272029508 - L1MB5 LINE L1 -47 6127 6074 1898 125 0 83 chr1 10164188 10164500 -272029164 - AluSx SINE Alu -26 286 1 2021 143 3 3 chr1 10164856 10165163 -272028501 + AluSx SINE Alu 1 307 -5 780 124 0 0 chr1 10166142 10166255 -272027409 + AluSg/x SINE Alu 181 293 -17 1242 128 0 15 chr1 10166256 10166451 -272027213 + AluSq SINE Alu 122 313 0 2014 136 14 0 chr1 10167482 10167769 -272025895 - AluJo SINE Alu -21 291 1 2321 41 0 44 chr1 10168726 10169043 -272024621 - AluY SINE Alu 0 304 1 2437 93 0 3 chr1 10169396 10169707 -272023957 - AluSx SINE Alu -2 310 1 2226 90 4 0 chr1 10170635 10170932 -272022732 - AluSc SINE Alu 0 302 5 1529 159 10 68 chr1 10170937 10171113 -272022551 - AluJb SINE Alu -11 301 149 2067 123 3 20 chr1 10171113 10171405 -272022259 + AluSx SINE Alu 1 287 -25 1529 159 10 68 chr1 10171405 10171536 -272022128 - AluJb SINE Alu -163 149 12 1847 160 0 0 chr1 10171916 10172204 -272021460 + AluJb SINE Alu 23 310 -2 2192 113 0 22 chr1 10172382 10172693 -272020971 - AluSx SINE Alu -8 304 1 493 227 19 2 chr1 10172977 10173137 -272020527 + MIR SINE MIR 67 262 0 273 75 0 0 chr1 10173309 10173349 -272020315 + (CA)n Simple_repeat Simple_repeat 2 41 0 189 0 0 0 chr1 10173348 10173369 -272020295 + (TC)n Simple_repeat Simple_repeat 1 21 0 * 427 213 57 41 chr1 10173446 10173568 -272020096 - L1ME4a LINE L1 -22 6099 5976 2103 120 0 13 chr1 10173577 10173878 -272019786 - AluSq SINE Alu -16 297 1 242 272 140 0 chr1 10173885 10173999 -272019665 - L1ME4a LINE L1 -376 5745 5616 239 191 0 0 chr1 10174002 10174044 -272019620 + LTR50 LTR ERVL 7 48 -747 1507 126 39 9 chr1 10174061 10174160 -272019504 - AluSx SINE Alu -75 237 142 2203 99 0 14 chr1 10174160 10174340 -272019324 - AluSc SINE Alu 0 311 135 2319 86 7 0 chr1 10174340 10174632 -272019032 - AluSp SINE Alu -19 294 1 2203 99 0 14 chr1 10174632 10174766 -272018898 - AluSc SINE Alu -176 135 1 1507 126 39 9 chr1 10174766 10174895 -272018769 - AluSx SINE Alu -170 142 1 1820 156 54 0 chr1 10174915 10175210 -272018454 - AluJo SINE Alu -1 311 1 359 275 111 2 chr1 10175308 10175653 -272018011 + LTR50 LTR ERVL 108 654 -141 2114 120 3 3 chr1 10175654 10175954 -272017710 - AluSx SINE Alu -12 300 1 302 280 27 0 chr1 10175956 10176031 -272017633 - L1ME4a LINE L1 -506 5615 5539 1973 96 25 32 chr1 10176173 10176491 -272017173 - AluSg SINE Alu 0 318 3 2606 44 0 7 chr1 10177293 10177590 -272016074 - AluY SINE Alu -16 295 1 2325 101 0 3 chr1 10177592 10177890 -272015774 - AluSc SINE Alu -12 297 1 398 127 0 0 chr1 10178257 10178312 -272015352 - AluSp/q SINE Alu -38 265 211 517 205 137 0 chr1 10178514 10178631 -272015033 - AluJo SINE Alu -178 134 2 2009 144 0 22 chr1 10179531 10179850 -272013814 - AluSx SINE Alu 0 312 1 207 0 0 0 chr1 10179902 10179925 -272013739 + (G)n Simple_repeat Simple_repeat 1 23 0 23 33 0 0 chr1 10180324 10180354 -272013310 + AT_rich Low_complexity Low_complexity 1 30 0 2127 106 0 17 chr1 10180747 10181040 -272012624 - AluSx SINE Alu -19 293 6 2306 114 0 0 chr1 10181775 10182083 -272011581 - AluSx SINE Alu -3 309 2 2314 53 0 11 chr1 10182626 10182910 -272010754 - AluY SINE Alu -2 309 29 681 219 0 71 chr1 10183374 10183484 -272010180 + MER104 DNA Tc2 5 98 -1800 2244 117 3 3 chr1 10183484 10183792 -272009872 - AluSg SINE Alu -2 308 1 681 219 0 71 chr1 10183792 10183864 -272009800 + MER104 DNA Tc2 98 174 -6 301 221 55 63 chr1 10184007 10184134 -272009530 + L2 LINE L2 2934 3059 -254 1087 169 20 55 chr1 10184561 10184815 -272008849 + MLT1D LTR MaLR 1 245 -260 812 169 131 121 chr1 10184795 10184836 -272008828 + MLT1D LTR MaLR 185 224 -281 * 1871 146 14 0 chr1 10184836 10185123 -272008541 - AluSx SINE Alu -21 291 1 1695 146 19 11 chr1 10185126 10185393 -272008271 - AluSx SINE Alu -16 296 28 812 169 131 121 chr1 10185393 10185567 -272008097 + MLT1D LTR MaLR 225 410 -95 2215 90 14 0 chr1 10185567 10185855 -272007809 - AluSx SINE Alu -20 292 1 812 169 131 121 chr1 10185855 10185948 -272007716 + MLT1D LTR MaLR 410 501 -4 1701 183 109 10 chr1 10186669 10187103 -272006561 - MLT1D LTR MaLR -5 462 1 406 332 31 38 chr1 10187133 10187422 -272006242 + ERVL LTR ERVL 1025 1311 -4453 1048 269 86 15 chr1 10187676 10188212 -272005452 + L1M4 LINE L1 2512 3085 -3061 2116 90 29 42 chr1 10188225 10188536 -272005128 + AluSp SINE Alu 1 307 -6 1534 262 158 32 chr1 10188550 10188831 -272004833 + L1M4 LINE L1 3316 3560 -2586 2127 116 27 3 chr1 10188831 10189132 -272004532 - AluSx SINE Alu -4 308 1 1534 262 158 32 chr1 10189132 10189712 -272003952 + L1M4 LINE L1 3560 4285 -1861 2425 88 0 16 chr1 10189712 10189849 -272003815 + AluSx SINE Alu 1 139 -173 2270 102 7 0 chr1 10189849 10190144 -272003520 + AluY SINE Alu 1 297 -14 2425 88 0 16 chr1 10190144 10190323 -272003341 + AluSx SINE Alu 139 312 0 1429 279 59 36 chr1 10190366 10190889 -272002775 + ERVL LTR ERVL 4745 5279 -485 1945 131 3 7 chr1 10191294 10191608 -272002056 - AluSx SINE Alu 0 313 1 1657 161 16 48 chr1 10191744 10192055 -272001609 - AluJo SINE Alu -11 301 1 2190 112 3 0 chr1 10192495 10192790 -272000874 - AluSg SINE Alu -14 296 1 1088 90 0 0 chr1 10192790 10192923 -272000741 - AluSg SINE Alu -177 133 1 781 154 32 0 chr1 10193304 10193427 -272000237 - AluSx SINE Alu -22 290 164 494 141 0 0 chr1 10193425 10193496 -272000168 - AluSx SINE Alu -240 72 2 * 216 288 14 14 chr1 10193720 10193793 -271999871 - MIR SINE MIR -65 143 71 1786 176 3 16 chr1 10193807 10194119 -271999545 - AluJo SINE Alu -2 310 3 1008 114 0 0 chr1 10194124 10194256 -271999408 - FLAM_C SINE Alu -11 132 1 464 280 186 10 chr1 10194425 10194618 -271999046 - MIR SINE MIR 0 262 36 721 242 171 47 chr1 10194956 10195365 -271998299 + L2 LINE L2 2854 3313 0 2037 110 20 37 chr1 10195740 10195912 -271997752 - AluSc SINE Alu -14 295 129 1907 81 16 12 chr1 10195912 10196170 -271997494 - AluSq SINE Alu -10 303 45 2037 110 20 37 chr1 10196170 10196297 -271997367 - AluSc SINE Alu -180 129 1 2227 99 0 26 chr1 10196388 10196690 -271996974 - AluSx SINE Alu -18 294 1 2243 83 0 23 chr1 10197504 10197804 -271995860 + AluSx SINE Alu 1 293 -19 751 184 8 0 chr1 10197953 10198078 -271995586 + FAM SINE Alu 41 166 -19 21 36 0 0 chr1 10198078 10198106 -271995558 + AT_rich Low_complexity Low_complexity 1 28 0 2399 81 3 3 chr1 10198115 10198423 -271995241 + AluY SINE Alu 1 308 -3 1106 264 84 39 chr1 10198503 10199089 -271994575 - L1M4 LINE L1 -1218 4928 4317 2258 109 3 0 chr1 10199150 10199443 -271994221 - AluSx SINE Alu -18 294 1 2013 113 7 4 chr1 10200840 10201114 -271992550 - AluSx SINE Alu -24 288 14 2176 119 13 13 chr1 10201132 10201443 -271992221 - AluSx SINE Alu -1 311 1 24 53 0 0 chr1 10201550 10201588 -271992076 + AT_rich Low_complexity Low_complexity 1 38 0 2038 105 0 90 chr1 10202409 10202501 -271991163 + AluSx SINE Alu 1 100 -212 2382 91 3 3 chr1 10202501 10202810 -271990854 + AluSc SINE Alu 1 309 0 2038 105 0 90 chr1 10202810 10202879 -271990785 + AluSx SINE Alu 100 174 -138 2412 87 3 0 chr1 10202879 10203177 -271990487 + AluSp SINE Alu 2 300 -13 2038 105 0 90 chr1 10203177 10203348 -271990316 + AluSx SINE Alu 174 304 -8 398 242 60 65 chr1 10203549 10203764 -271989900 + MIR SINE MIR 48 261 -1 314 239 56 0 chr1 10203821 10203892 -271989772 + MIR SINE MIR 14 88 -174 * 599 237 46 8 chr1 10203871 10204002 -271989662 + L2 LINE L2 3137 3272 0 244 304 63 0 chr1 10204821 10204900 -271988764 + MIR SINE MIR 32 115 -93 1913 164 0 0 chr1 10205239 10205538 -271988126 + AluSx SINE Alu 1 299 -13 2141 150 3 31 chr1 10205687 10206041 -271987623 + MER7A DNA MER2_type 5 346 0 456 133 0 0 chr1 10206111 10206171 -271987493 + AluS SINE Alu 2 61 -257 1008 118 0 7 chr1 10206274 10206418 -271987246 + AluSg/x SINE Alu 129 271 -41 788 116 124 8 chr1 10206429 10206550 -271987114 + FLAM_C SINE Alu 2 136 -7 2078 138 0 0 chr1 10206842 10207133 -271986531 - AluSx SINE Alu -21 291 1 2518 81 0 3 chr1 10207620 10207930 -271985734 - AluSc SINE Alu 0 309 1 2659 134 57 2 chr1 10208300 10208704 -271984960 + MSTB LTR MaLR 1 426 0 437 252 63 25 chr1 10208771 10208930 -271984734 + HsTC2 DNA Tc2 729 893 -1005 1860 118 0 0 chr1 10209049 10209326 -271984338 + AluSx SINE Alu 35 312 0 1913 138 3 3 chr1 10209736 10210018 -271983646 - AluSx SINE Alu -8 304 23 1004 148 206 18 chr1 10210820 10211043 -271982621 + L1MD3 LINE L1 7730 7994 -1 434 250 60 9 chr1 10211749 10211865 -271981799 - L2 LINE L2 -3 3310 3189 1981 98 0 85 chr1 10212196 10212330 -271981334 + AluSc SINE Alu 1 145 -182 2349 95 10 0 chr1 10212330 10212634 -271981030 + AluSc SINE Alu 1 307 -2 1981 98 0 85 chr1 10212634 10212852 -271980812 + AluSc SINE Alu 145 327 0 2310 99 6 6 chr1 10213541 10213853 -271979811 + AluSx SINE Alu 1 312 0 234 0 0 0 chr1 10214498 10214524 -271979140 + (CA)n Simple_repeat Simple_repeat 2 27 0 2454 68 3 13 chr1 10214694 10215003 -271978661 + AluY SINE Alu 1 306 -5 2251 102 3 0 chr1 10215649 10215943 -271977721 + AluSp SINE Alu 1 295 -18 430 270 17 73 chr1 10216012 10216190 -271977474 + FAM SINE Alu 1 168 -17 304 280 126 40 chr1 10216842 10217017 -271976647 - L2 LINE L2 -297 3016 2827 259 179 39 26 chr1 10217022 10217100 -271976564 + (TG)n Simple_repeat Simple_repeat 1 79 0 385 203 0 13 chr1 10217102 10217181 -271976483 - L2 LINE L2 -504 2810 2733 441 0 0 0 chr1 10217201 10217250 -271976414 + (TG)n Simple_repeat Simple_repeat 2 50 0 239 104 21 0 chr1 10217251 10217299 -271976365 + (GA)n Simple_repeat Simple_repeat 2 50 0 802 221 7 0 chr1 10217299 10217444 -271976220 - FRAM SINE Alu -30 146 1 792 92 151 0 chr1 10217774 10217893 -271975771 - L1PA14 LINE L1 -1 6160 6024 646 98 0 0 chr1 10218297 10218379 -271975285 + AluSx SINE Alu 2 83 -229 2025 104 0 0 chr1 10218379 10218638 -271975026 + AluSx SINE Alu 36 294 -18 185 308 55 22 chr1 10219102 10219193 -271974471 + MIR SINE MIR 159 252 -10 219 69 0 0 chr1 10220119 10220148 -271973516 + (CA)n Simple_repeat Simple_repeat 1 29 0 2359 112 0 0 chr1 10220417 10220730 -271972934 + AluSq SINE Alu 1 313 0 312 178 0 0 chr1 10220946 10221019 -271972645 + (CAT)n Simple_repeat Simple_repeat 2 74 0 1265 131 63 0 chr1 10221253 10221444 -271972220 + AluSx SINE Alu 93 295 -17 305 271 16 49 chr1 10221475 10221506 -271972158 + L1MC4 LINE L1 7924 7954 -88 2393 84 0 3 chr1 10221506 10221804 -271971860 + AluY SINE Alu 1 297 -14 305 271 16 49 chr1 10221804 10221894 -271971770 + L1MC4 LINE L1 7954 8041 -1 181 254 18 36 chr1 10221969 10222024 -271971640 - L2 LINE L2 -71 3201 3148 2198 120 0 16 chr1 10222245 10222562 -271971102 + AluSx SINE Alu 1 312 0 914 43 58 0 chr1 10273304 10273442 -271920222 - MER30 DNA MER1_type -80 150 5 363 248 0 117 chr1 10273616 10273753 -271919911 + L1MCa LINE L1 1996 2116 -4310 236 266 115 35 chr1 10273902 10273927 -271919737 - L2 LINE L2 -154 3118 3096 1795 134 0 0 chr1 10273927 10274181 -271919483 + AluSx SINE Alu 1 254 -58 236 266 115 35 chr1 10274181 10274268 -271919396 - L2 LINE L2 -176 3096 2997 764 248 6 81 chr1 10275697 10275963 -271917701 - MIR SINE MIR 0 262 17 222 261 43 0 chr1 10276039 10276108 -271917556 + L2 LINE L2 3150 3221 -51 324 94 0 0 chr1 10276114 10276167 -271917497 + (TTCA)n Simple_repeat Simple_repeat 4 56 0 222 240 40 40 chr1 10276172 10276247 -271917417 + MIR SINE MIR 74 148 -114 2191 110 3 0 chr1 10276249 10276549 -271917115 + AluSx SINE Alu 2 302 -10 2315 81 7 3 chr1 10276597 10276904 -271916760 + AluSx SINE Alu 4 311 -1 273 221 0 186 chr1 10276904 10277103 -271916561 - Charlie5 DNA MER1_type -62 2550 2389 230 217 22 0 chr1 10277868 10277914 -271915750 - L2 LINE L2 -15 3298 3252 2259 105 3 0 chr1 10277975 10278279 -271915385 + AluSx SINE Alu 1 305 -7 188 250 0 0 chr1 10278281 10278321 -271915343 + L2 LINE L2 3214 3253 -19 574 271 21 7 chr1 10279171 10279315 -271914349 - MIR3 SINE MIR -62 146 1 187 355 66 0 chr1 10279461 10279537 -271914127 + MIR3 SINE MIR 74 154 -54 242 287 0 11 chr1 10279691 10279785 -271913879 - MER113 DNA MER1_type? -394 127 35 288 209 25 106 chr1 10280641 10280817 -271912847 + MIR SINE MIR 11 250 -12 365 300 60 27 chr1 10280961 10281111 -271912553 + MIR3 SINE MIR 40 194 -14 341 287 117 21 chr1 10282565 10282764 -271910900 + MIR3 SINE MIR 5 215 -47 594 202 30 98 chr1 10282848 10283051 -271910613 - MER5A DNA MER1_type 0 189 1 328 325 28 0 chr1 10283408 10283523 -271910141 - MIR3 SINE MIR -39 169 51 1854 120 56 0 chr1 10283617 10283913 -271909751 + AluSx SINE Alu 1 311 0 188 289 145 12 chr1 10284472 10284555 -271909109 - MIR SINE MIR -93 115 22 1796 102 0 0 chr1 10284890 10285147 -271908517 + AluSg SINE Alu 48 304 0 300 290 243 22 chr1 10285277 10285824 -271907840 + L2 LINE L2 2643 3306 -7 645 267 42 42 chr1 10286953 10287193 -271906471 - MIR SINE MIR -19 243 4 2096 129 3 0 chr1 10288873 10289175 -271904489 + AluSx SINE Alu 1 303 -9 196 321 49 12 chr1 10289790 10289871 -271903793 - MIR SINE MIR -77 185 102 2144 117 7 7 chr1 10289958 10290265 -271903399 - AluSx SINE Alu -5 307 1 633 266 59 20 chr1 10290463 10290666 -271902998 - MER20 DNA MER1_type -8 211 1 371 329 99 0 chr1 10290672 10290889 -271902775 + Charlie8 DNA MER1_type 4 228 -2189 1713 167 3 48 chr1 10291082 10291213 -271902451 + AluJo SINE Alu 1 136 -176 1930 120 67 0 chr1 10291213 10291497 -271902167 + AluSq SINE Alu 1 303 -10 1713 167 3 48 chr1 10291497 10291677 -271901987 + AluJo SINE Alu 136 298 -14 251 222 0 0 chr1 10291677 10291722 -271901942 + (CATATA)n Simple_repeat Simple_repeat 3 47 0 205 327 34 93 chr1 10291965 10292170 -271901494 - L2 LINE L2 -4 3268 3076 1796 135 66 0 chr1 10292454 10292743 -271900921 - AluSx SINE Alu -4 308 1 304 329 64 43 chr1 10292745 10292885 -271900779 + L2 LINE L2 3125 3267 -5 428 247 123 26 chr1 10293523 10293677 -271899987 - MIR SINE MIR -21 241 73 2430 71 3 0 chr1 10294105 10294414 -271899250 + AluY SINE Alu 1 310 -1 1181 183 190 15 chr1 10294562 10294825 -271898839 - AluJb SINE Alu -3 309 1 2364 90 0 3 chr1 10295493 10295803 -271897861 + AluSq SINE Alu 1 309 -4 2480 49 0 7 chr1 10296404 10296709 -271896955 - AluY SINE Alu -8 303 1 352 331 47 0 chr1 10298272 10298399 -271895265 - L3 LINE CR1 -11 1566 1434 448 214 10 0 chr1 10299080 10299178 -271894486 + MER81 DNA DNA 1 99 -15 190 278 113 31 chr1 10299404 10299501 -271894163 - MIR3 SINE MIR -5 203 99 1947 115 3 72 chr1 10299958 10300283 -271893381 + AluSx SINE Alu 1 299 -13 22 0 0 0 chr1 10301134 10301156 -271892508 + GC_rich Low_complexity Low_complexity 1 22 0 308 293 13 0 chr1 10301438 10301513 -271892151 + L2 LINE L2 3186 3261 -11 1662 134 69 79 chr1 10301514 10301819 -271891845 + AluSx SINE Alu 1 302 -10 255 226 32 0 chr1 10301867 10301929 -271891735 + CT-rich Low_complexity Low_complexity 2 65 0 379 287 87 7 chr1 10301954 10302016 -271891648 + Charlie8 DNA MER1_type 21 77 -264 2325 106 0 3 chr1 10302016 10302318 -271891346 + AluSx SINE Alu 1 301 -11 379 287 87 7 chr1 10302318 10302405 -271891259 + Charlie8 DNA MER1_type 77 182 -159 698 270 74 5 chr1 10302496 10302685 -271890979 + MIR SINE MIR 51 252 -10 1527 165 0 0 chr1 10302690 10302920 -271890744 + AluJo SINE Alu 1 230 -82 2225 107 0 0 chr1 10302959 10303273 -271890391 + AluSx SINE Alu 1 314 0 2214 119 0 0 chr1 10304489 10304783 -271888881 - AluSx SINE Alu -18 294 1 313 272 119 0 chr1 10304807 10304891 -271888773 - MIR SINE MIR -63 145 55 870 144 0 8 chr1 10305299 10305431 -271888233 + AluJb SINE Alu 6 136 -176 1573 137 144 4 chr1 10305432 10305695 -271887969 + AluSx SINE Alu 3 302 0 335 292 186 40 chr1 10305808 10306034 -271887630 - L2 LINE L2 0 3272 3014 191 83 0 0 chr1 10306057 10306081 -271887583 + L2 LINE L2 3199 3222 -91 523 280 151 5 chr1 10306499 10306717 -271886947 + L2 LINE L2 2500 2749 -565 1962 152 7 0 chr1 10306719 10307015 -271886649 + AluSx SINE Alu 1 298 -14 1750 225 62 18 chr1 10307192 10307687 -271885977 + L2 LINE L2 2787 3307 -6 2269 113 3 6 chr1 10307687 10307998 -271885666 + AluSq SINE Alu 1 310 -3 1106 143 6 6 chr1 10307998 10308173 -271885491 + AluSq SINE Alu 126 300 -13 226 237 151 11 chr1 10308203 10308296 -271885368 + L1ME4a LINE L1 6005 6110 -11 602 295 133 26 chr1 10309584 10309930 -271883734 - L2 LINE L2 0 3313 2931 535 106 11 11 chr1 10310091 10310185 -271883479 + (GGAA)n Simple_repeat Simple_repeat 2 95 0 2315 86 7 3 chr1 10310343 10310633 -271883031 + AluSx SINE Alu 1 291 -21 565 123 40 0 chr1 10310672 10310773 -271882891 - MER5A DNA MER1_type -80 102 4 1485 176 26 40 chr1 10310861 10311163 -271882501 + AluJo SINE Alu 2 299 -13 520 212 33 46 chr1 10311276 10311427 -271882237 + L2 LINE L2 2632 2780 -534 721 236 16 147 chr1 10311438 10311861 -271881803 + L2 LINE L2 2888 3255 -17 355 260 24 79 chr1 10311946 10312073 -271881591 + L2 LINE L2 3141 3260 -12 361 304 84 9 chr1 10312467 10312602 -271881062 + MIR SINE MIR 21 163 -45 1706 220 31 96 chr1 10312651 10312706 -271880958 + MER77 LTR ERV1 84 141 -464 938 99 0 57 chr1 10312706 10312847 -271880817 + FLAM_C SINE Alu 1 133 0 1706 220 31 96 chr1 10312847 10312992 -271880672 + MER77 LTR ERV1 141 294 -311 2260 118 3 0 chr1 10312992 10313297 -271880367 + AluSx SINE Alu 1 306 -6 1706 220 31 96 chr1 10313297 10313488 -271880176 + MER77 LTR ERV1 294 432 -173 6501 117 144 24 chr1 10313488 10314629 -271879035 + MER52C LTR ERV1 1 1278 0 1706 220 31 96 chr1 10314629 10314789 -271878875 + MER77 LTR ERV1 432 601 -4 232 276 29 48 chr1 10314845 10314890 -271878774 + MIR SINE MIR 146 190 -72 2068 137 0 37 chr1 10314890 10315026 -271878638 + AluSx SINE Alu 1 141 -171 2399 88 3 3 chr1 10315026 10315332 -271878332 + AluSg SINE Alu 1 306 -4 2068 137 0 37 chr1 10315332 10315516 -271878148 + AluSx SINE Alu 141 309 -3 232 276 29 48 chr1 10315516 10315575 -271878089 + MIR SINE MIR 190 248 -14 417 241 292 15 chr1 10315610 10315805 -271877859 + MIR SINE MIR 14 262 0 2272 76 0 54 chr1 10316234 10316550 -271877114 - AluSg1 SINE Alu -10 299 1 1807 149 0 14 chr1 10316774 10317055 -271876609 + AluJb SINE Alu 1 277 -35 278 105 0 0 chr1 10317055 10317093 -271876571 - Alu SINE Alu -262 38 1 2117 94 4 0 chr1 10317117 10317406 -271876258 + AluSx SINE Alu 16 305 0 1368 208 83 0 chr1 10317409 10317736 -271875928 - LTR37A LTR ERV1 -55 371 18 2055 133 3 10 chr1 10317789 10318090 -271875574 + AluSq SINE Alu 2 300 -13 511 14 0 56 chr1 10318094 10318165 -271875499 - AluJb SINE Alu -161 151 85 1989 159 0 3 chr1 10318301 10318596 -271875068 + AluJo SINE Alu 2 295 -17 360 281 84 94 chr1 10318615 10318865 -271874799 - L2 LINE L2 -338 2976 2728 2131 123 0 13 chr1 10318865 10319165 -271874499 - AluSx SINE Alu -14 298 3 360 281 84 94 chr1 10319165 10319234 -271874430 - L2 LINE L2 -586 2728 2660 776 271 95 7 chr1 10319329 10319635 -271874029 + L1ME3A LINE L1 5498 5830 -340 2301 109 3 0 chr1 10319639 10319941 -271873723 + AluSq SINE Alu 1 303 -10 1788 178 3 10 chr1 10321040 10321332 -271872332 + AluJo SINE Alu 1 290 -22 231 88 0 0 chr1 10321333 10321367 -271872297 + (GA)n Simple_repeat Simple_repeat 1 34 0 375 92 13 40 chr1 10321368 10321444 -271872220 + (GGAA)n Simple_repeat Simple_repeat 3 76 0 1964 168 0 0 chr1 10322336 10322633 -271871031 + AluJo SINE Alu 1 297 -15 2137 137 3 3 chr1 10322635 10322948 -271870716 + AluSq SINE Alu 1 313 0 1043 114 0 0 chr1 10322962 10323093 -271870571 + AluSg SINE Alu 1 131 -179 1766 179 7 16 chr1 10323470 10323777 -271869887 + AluJo SINE Alu 1 304 -8 594 0 0 0 chr1 10323777 10323843 -271869821 + (GGAA)n Simple_repeat Simple_repeat 3 68 0 207 69 0 0 chr1 10323842 10323871 -271869793 + (CAAGC)n Simple_repeat Simple_repeat 2 30 0 * 1929 130 0 7 chr1 10323875 10324144 -271869520 + AluSx SINE Alu 13 279 -33 186 43 0 0 chr1 10324144 10324167 -271869497 + (GGGGA)n Simple_repeat Simple_repeat 1 23 0 389 309 40 34 chr1 10324248 10324397 -271869267 - MIR SINE MIR -74 188 39 328 303 11 68 chr1 10324542 10324718 -271868946 + L1ME LINE L1 5350 5515 -655 211 270 180 34 chr1 10324804 10324893 -271868771 + MIR SINE MIR 123 224 -38 275 167 154 26 chr1 10324925 10325003 -271868661 + L2 LINE L2 3188 3275 -38 1914 118 0 18 chr1 10325133 10325237 -271868427 + AluSx SINE Alu 33 137 -175 2280 101 0 7 chr1 10325237 10325543 -271868121 + AluSx SINE Alu 1 304 -8 1914 118 0 18 chr1 10325543 10325710 -271867954 + AluSx SINE Alu 137 299 -13 1836 139 0 94 chr1 10325712 10326051 -271867613 + AluJb SINE Alu 1 307 -5 1963 112 23 3 chr1 10326077 10326380 -271867284 - AluSg SINE Alu -1 309 1 240 91 0 0 chr1 10326380 10326413 -271867251 - MER58 DNA MER1_type -32 2388 2356 288 221 104 0 chr1 10326425 10326502 -271867162 - MER58 DNA MER1_type -110 231 147 1788 169 27 3 chr1 10326504 10326799 -271866865 - AluSg SINE Alu -8 302 1 651 234 50 0 chr1 10326820 10326961 -271866703 - AluJb SINE Alu -23 289 142 639 85 47 0 chr1 10327061 10327167 -271866497 + Tigger7 DNA MER2_type 412 522 -1965 465 182 0 82 chr1 10327149 10327259 -271866405 + Tigger7 DNA MER2_type 2391 2491 0 * 27 29 0 0 chr1 10327295 10327329 -271866335 + AT_rich Low_complexity Low_complexity 1 34 0 1425 120 37 14 chr1 10327686 10327783 -271865881 - AluJo SINE Alu -91 221 128 297 0 0 0 chr1 10327783 10327816 -271865848 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 1425 120 37 14 chr1 10327816 10327934 -271865730 - AluJo SINE Alu -184 128 1 317 255 142 7 chr1 10327934 10328075 -271865589 - L1ME LINE L1 -429 5692 5533 303 321 42 1 chr1 10328240 10328388 -271865276 + MIR SINE MIR 12 165 -60 199 247 112 11 chr1 10328497 10328586 -271865078 + MIR SINE MIR 165 262 0 367 240 10 30 chr1 10328591 10328691 -271864973 + L1ME4a LINE L1 6014 6111 -10 378 0 0 0 chr1 10329857 10329899 -271863765 + (TG)n Simple_repeat Simple_repeat 1 42 0 186 268 0 18 chr1 10330127 10330183 -271863481 + MIR SINE MIR 93 147 -61 287 234 71 64 chr1 10334803 10334944 -271858720 + MIR3 SINE MIR 22 163 -45 2388 78 0 3 chr1 10338360 10338655 -271855009 + AluSq SINE Alu 1 294 -19 2357 110 0 3 chr1 10338657 10338966 -271854698 + AluSx SINE Alu 1 308 -4 861 89 32 8 chr1 10339074 10339198 -271854466 + AluYb8 SINE Alu 1 127 -191 2487 92 0 0 chr1 10339202 10339507 -271854157 + AluSq SINE Alu 1 305 -8 250 279 195 68 chr1 10342244 10342576 -271851088 - L2 LINE L2 -1 3271 2882 1490 169 50 29 chr1 10342576 10342855 -271850809 + AluJo SINE Alu 20 304 -8 250 279 195 68 chr1 10342855 10342906 -271850758 - L2 LINE L2 -390 2882 2839 232 311 52 44 chr1 10343194 10343329 -271850335 + L2 LINE L2 3031 3166 -106 185 315 54 71 chr1 10343688 10343872 -271849792 - L2 LINE L2 -219 3053 2873 931 262 98 27 chr1 10344293 10344701 -271848963 - MLT1J LTR MaLR 0 511 75 3499 204 44 40 chr1 10345080 10346207 -271847457 - L1ME2 LINE L1 0 6164 5039 1322 149 0 0 chr1 10346208 10346403 -271847261 - AluJb SINE Alu -30 282 88 757 241 27 45 chr1 10346421 10346602 -271847062 - L1ME2 LINE L1 -1113 5033 4855 2465 94 0 0 chr1 10346602 10346909 -271846755 + AluSq SINE Alu 1 307 -6 757 241 27 45 chr1 10346909 10346947 -271846717 - L1ME2 LINE L1 -1291 4855 4818 25 0 0 0 chr1 10346950 10346975 -271846689 + AT_rich Low_complexity Low_complexity 1 25 0 2516 214 22 5 chr1 10346981 10347536 -271846128 - L1MB8 LINE L1 -14 6164 5601 1151 196 20 87 chr1 10347571 10347828 -271845836 - L1ME1 LINE L1 -3 6443 6215 2326 110 0 0 chr1 10347828 10348136 -271845528 + AluSx SINE Alu 4 311 -1 1151 196 20 87 chr1 10348136 10348236 -271845428 - L1ME1 LINE L1 -231 6215 6110 328 235 0 82 chr1 10348236 10348334 -271845330 - L1MC4 LINE L1 -1339 6703 6614 385 240 39 10 chr1 10348393 10348497 -271845167 - L1ME1 LINE L1 -1024 5402 5296 317 214 0 58 chr1 10348527 10348634 -271845030 - L1MC4 LINE L1 -1339 6983 1996 2328 80 3 38 chr1 10348694 10349007 -271844657 - AluSp SINE Alu -3 310 9 226 167 143 60 chr1 10349010 10349094 -271844570 - MER58C DNA MER1_type -13 202 112 199 200 15 15 chr1 10349081 10349146 -271844518 + CT-rich Low_complexity Low_complexity 3 67 0 * 249 234 47 103 chr1 10349161 10349187 -271844477 - MER58C DNA MER1_type -114 101 75 1949 107 9 79 chr1 10349187 10349505 -271844159 + AluSx SINE Alu 1 296 -16 249 234 47 103 chr1 10349505 10349585 -271844079 - MER58C DNA MER1_type -140 75 1 2386 193 37 19 chr1 10349592 10350544 -271843120 - L1ME LINE L1 -378 5786 4817 605 323 156 20 chr1 10353517 10354016 -271839648 + L1MC/D LINE L1 5254 5820 -1988 1656 150 66 0 chr1 10355057 10355344 -271838320 + 7SLRNA srpRNA srpRNA 1 306 -14 604 256 180 14 chr1 10356977 10357188 -271836476 + MIR SINE MIR 1 246 -16 2190 100 7 0 chr1 10357537 10357836 -271835828 - AluSx SINE Alu -11 301 1 2241 88 0 31 chr1 10358045 10358364 -271835300 + AluY SINE Alu 1 309 -2 1559 168 27 30 chr1 10358391 10358513 -271835151 + AluJb SINE Alu 3 124 -188 369 0 0 0 chr1 10358513 10358554 -271835110 + (TAAAA)n Simple_repeat Simple_repeat 4 44 0 1559 168 27 30 chr1 10358554 10358728 -271834936 + AluJb SINE Alu 124 298 -14 2053 116 0 49 chr1 10358728 10359055 -271834609 + AluSx SINE Alu 1 312 0 22 0 0 0 chr1 10359406 10359428 -271834236 + AT_rich Low_complexity Low_complexity 1 22 0 2285 105 0 0 chr1 10359561 10359866 -271833798 - AluSg SINE Alu -5 305 1 181 174 87 120 chr1 10362151 10362243 -271831421 - MIR3 SINE MIR -16 192 104 643 208 8 0 chr1 10363250 10363370 -271830294 + MIR SINE MIR 56 176 -86 363 270 166 61 chr1 10365139 10365302 -271828362 - L1MC5 LINE L1 -164 7797 7618 439 180 33 107 chr1 10366103 10366145 -271827519 - MER81 DNA DNA 0 114 70 2223 98 10 0 chr1 10366145 10366452 -271827212 - AluSx SINE Alu 0 312 3 439 180 33 107 chr1 10366452 10366531 -271827133 - MER81 DNA DNA -44 70 2 240 149 0 0 chr1 10368020 10368067 -271825597 + (GGA)n Simple_repeat Simple_repeat 2 48 0 282 29 0 0 chr1 10368405 10368440 -271825224 + (CCCCAG)n Simple_repeat Simple_repeat 3 37 0 26 64 0 0 chr1 10374877 10374924 -271818740 + AT_rich Low_complexity Low_complexity 1 47 0 390 288 47 26 chr1 10375048 10375235 -271818429 - L1MC4 LINE L1 -1339 6983 1927 21 57 0 0 chr1 10376840 10376875 -271816789 + GC_rich Low_complexity Low_complexity 1 35 0 189 0 0 0 chr1 10377121 10377142 -271816522 + (CGG)n Simple_repeat Simple_repeat 3 23 0 39 74 0 0 chr1 10377146 10377227 -271816437 + GC_rich Low_complexity Low_complexity 1 81 0 240 35 0 0 chr1 10380190 10380219 -271813445 + (GGA)n Simple_repeat Simple_repeat 3 31 0 272 257 0 0 chr1 10380241 10380315 -271813349 + A-rich Low_complexity Low_complexity 1 74 0 218 273 15 0 chr1 10382335 10382401 -271811263 + L2 LINE L2 3247 3313 0 2402 42 7 0 chr1 10383154 10383441 -271810223 + AluY SINE Alu 1 289 -22 204 214 0 0 chr1 10384997 10385039 -271808625 + G-rich Low_complexity Low_complexity 3 44 0 231 36 0 0 chr1 10387769 10387797 -271805867 + (GGGA)n Simple_repeat Simple_repeat 3 30 0 206 234 0 62 chr1 10387861 10387925 -271805739 + G-rich Low_complexity Low_complexity 5 64 0 37 0 0 0 chr1 10388269 10388306 -271805358 + AT_rich Low_complexity Low_complexity 1 37 0 200 98 0 24 chr1 10389219 10389260 -271804404 + (CGGGGG)n Simple_repeat Simple_repeat 4 43 0 290 311 66 0 chr1 10390243 10390365 -271803299 + L2 LINE L2 3143 3272 0 253 323 40 0 chr1 10390656 10390780 -271802884 - MER3 DNA MER1_type -70 139 11 357 376 44 6 chr1 10394127 10394308 -271799356 + MIR SINE MIR 61 248 -14 276 30 0 0 chr1 10394684 10394717 -271798947 + (CCCCAG)n Simple_repeat Simple_repeat 4 36 0 212 356 0 0 chr1 10395513 10395631 -271798033 + GA-rich Low_complexity Low_complexity 2 119 0 921 126 0 15 chr1 10395903 10396038 -271797626 - FLAM_C SINE Alu 0 133 1 21 57 0 0 chr1 10398606 10398641 -271795023 + AT_rich Low_complexity Low_complexity 1 35 0 349 237 12 0 chr1 10399274 10399443 -271794221 + (CA)n Simple_repeat Simple_repeat 2 172 0 256 230 22 11 chr1 10399459 10399637 -271794027 + (CA)n Simple_repeat Simple_repeat 1 180 0 509 272 17 0 chr1 10399664 10399837 -271793827 + (CA)n Simple_repeat Simple_repeat 1 176 0 184 249 23 6 chr1 10399903 10400080 -271793584 + (CA)n Simple_repeat Simple_repeat 1 180 0 181 241 15 0 chr1 10400134 10400267 -271793397 + (CA)n Simple_repeat Simple_repeat 2 136 0 203 249 11 11 chr1 10400343 10400520 -271793144 + (CA)n Simple_repeat Simple_repeat 2 178 0 223 141 31 0 chr1 10400593 10400657 -271793007 + (CA)n Simple_repeat Simple_repeat 2 67 0 180 0 0 0 chr1 10401870 10401890 -271791774 + (TCTCC)n Simple_repeat Simple_repeat 4 23 0 233 231 0 19 chr1 10402662 10402714 -271790950 + (TCCA)n Simple_repeat Simple_repeat 1 51 0 180 0 0 0 chr1 10402714 10402734 -271790930 + (TCCC)n Simple_repeat Simple_repeat 1 20 0 396 319 139 28 chr1 10403535 10403751 -271789913 + L2 LINE L2 3033 3272 0 250 264 88 48 chr1 10403833 10403958 -271789706 - MIR SINE MIR -119 143 14 210 143 0 0 chr1 10404690 10404725 -271788939 + (CA)n Simple_repeat Simple_repeat 2 36 0 246 314 12 0 chr1 10404759 10404845 -271788819 - L2 LINE L2 -19 3294 3208 201 333 106 24 chr1 10407043 10407166 -271786498 - MIR SINE MIR -81 181 49 211 208 19 0 chr1 10410355 10410408 -271783256 + (CCCG)n Simple_repeat Simple_repeat 1 54 0 204 40 0 0 chr1 10418797 10418822 -271774842 + (TTTC)n Simple_repeat Simple_repeat 2 26 0 2056 121 0 0 chr1 10418824 10419106 -271774558 - AluSx SINE Alu -30 282 1 227 286 218 42 chr1 10419298 10419606 -271774058 + L2 LINE L2 2908 3269 -3 367 177 188 10 chr1 10422482 10422578 -271771086 + MER81 DNA DNA 2 114 0 195 129 0 0 chr1 10426886 10426917 -271766747 + (GGA)n Simple_repeat Simple_repeat 2 32 0 263 308 111 17 chr1 10427750 10427867 -271765797 - L3 LINE CR1 -60 1517 1390 227 100 0 25 chr1 10428968 10429008 -271764656 + (TCCC)n Simple_repeat Simple_repeat 4 42 0 234 0 0 0 chr1 10431403 10431429 -271762235 + (A)n Simple_repeat Simple_repeat 1 26 0 24 77 0 0 chr1 10431905 10431957 -271761707 + GC_rich Low_complexity Low_complexity 1 52 0 180 158 0 0 chr1 10432380 10432418 -271761246 + C-rich Low_complexity Low_complexity 1 38 0 672 119 0 0 chr1 10436781 10436899 -271756765 + (GA)n Simple_repeat Simple_repeat 2 119 0 333 0 0 0 chr1 10436899 10436936 -271756728 + (CA)n Simple_repeat Simple_repeat 2 38 0 305 308 138 71 chr1 10437422 10437542 -271756122 + MIR SINE MIR 22 133 -129 1259 159 9 0 chr1 10437542 10437756 -271755908 + L1MB7 LINE L1 5969 6184 0 305 308 138 71 chr1 10437756 10437859 -271755805 + MIR SINE MIR 133 260 -2 294 73 0 0 chr1 10439764 10439805 -271753859 + (GA)n Simple_repeat Simple_repeat 1 41 0 204 291 182 27 chr1 10440303 10440413 -271753251 - MIR SINE MIR -79 183 57 871 198 0 55 chr1 10440533 10440735 -271752929 - MER58A DNA MER1_type 0 224 34 182 320 16 82 chr1 10444876 10444998 -271748666 - MIR3 SINE MIR -47 161 48 269 329 0 0 chr1 10445577 10445656 -271748008 + GA-rich Low_complexity Low_complexity 4 82 0 235 254 8 49 chr1 10445750 10445872 -271747792 + G-rich Low_complexity Low_complexity 2 118 0 342 156 0 0 chr1 10446409 10446473 -271747191 + GA-rich Low_complexity Low_complexity 2 65 0 213 314 71 0 chr1 10447590 10447660 -271746004 - L2 LINE L2 -10 3262 3188 2172 113 13 0 chr1 10447671 10447971 -271745693 + AluSx SINE Alu 1 304 -8 382 283 32 34 chr1 10447986 10448122 -271745542 + MIR SINE MIR 37 170 -61 285 254 127 36 chr1 10448125 10448235 -271745429 - L2 LINE L2 -5 3308 3189 260 246 0 0 chr1 10448256 10448313 -271745351 + MIR SINE MIR 206 262 0 2174 187 29 55 chr1 10448355 10448882 -271744782 + L1MB5 LINE L1 5626 6166 -17 2141 117 0 0 chr1 10448882 10449172 -271744492 + AluSq SINE Alu 1 290 -23 285 29 0 0 chr1 10449177 10449211 -271744453 + (TAAAA)n Simple_repeat Simple_repeat 3 36 0 2174 187 29 55 chr1 10449211 10449262 -271744402 + L1MB5 LINE L1 6170 6183 0 192 97 0 0 chr1 10450109 10450140 -271743524 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 2226 102 3 7 chr1 10450844 10451149 -271742515 + AluSx SINE Alu 2 305 -7 226 250 75 50 chr1 10451166 10451286 -271742378 - MIR SINE MIR -133 129 7 443 215 0 43 chr1 10452306 10452492 -271741172 + (CACCC)n Simple_repeat Simple_repeat 3 180 0 276 275 0 33 chr1 10452508 10452690 -271740974 + (CACCC)n Simple_repeat Simple_repeat 1 176 0 424 235 0 39 chr1 10452769 10453134 -271740530 + (CACCC)n Simple_repeat Simple_repeat 1 350 0 195 42 0 0 chr1 10454200 10454224 -271739440 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 282 272 194 7 chr1 10454844 10454991 -271738673 - MIR SINE MIR -59 149 13 24 0 0 0 chr1 10455171 10455195 -271738469 + AT_rich Low_complexity Low_complexity 1 24 0 328 103 0 59 chr1 10455687 10455755 -271737909 - AluSq SINE Alu -1 301 238 1630 125 0 20 chr1 10455788 10456036 -271737628 - AluSq SINE Alu -70 243 1 448 374 27 0 chr1 10456894 10457081 -271736583 + MIR SINE MIR 40 231 -31 262 248 208 0 chr1 10462819 10462920 -271730744 - MIR SINE MIR 0 262 141 231 146 0 0 chr1 10462922 10462963 -271730701 + (CTA)n Simple_repeat Simple_repeat 3 43 0 322 312 39 19 chr1 10462975 10463129 -271730535 - MIR SINE MIR -2 260 104 33 0 0 0 chr1 10465405 10465438 -271728226 + AT_rich Low_complexity Low_complexity 1 33 0 194 133 0 44 chr1 10465905 10465950 -271727714 + (GGGGA)n Simple_repeat Simple_repeat 1 43 0 417 301 102 6 chr1 10466388 10466626 -271727038 + Charlie1a DNA MER1_type 2 268 -1187 2095 104 3 0 chr1 10466626 10466913 -271726751 - AluSx SINE Alu -4 308 21 988 129 0 0 chr1 10466922 10467084 -271726580 - AluSx SINE Alu 0 307 146 563 44 0 0 chr1 10467084 10467152 -271726512 - AluSx SINE Alu -245 68 1 3523 194 72 81 chr1 10467157 10467644 -271726020 + Charlie1a DNA MER1_type 264 754 -2007 2157 114 0 0 chr1 10467644 10467934 -271725730 + AluSg SINE Alu 1 290 -20 3523 194 72 81 chr1 10467934 10468119 -271725545 + Charlie1a DNA MER1_type 754 939 -1822 1870 163 3 6 chr1 10468119 10468432 -271725232 + AluJb SINE Alu 1 312 0 3523 194 72 81 chr1 10468432 10468861 -271724803 + Charlie1a DNA MER1_type 939 1357 -1404 2187 107 13 0 chr1 10468861 10469160 -271724504 + AluSx SINE Alu 1 303 -9 3523 194 72 81 chr1 10469160 10469259 -271724405 + Charlie1a DNA MER1_type 1357 1455 0 402 390 26 40 chr1 10470262 10470534 -271723130 - L2 LINE L2 -5 3267 3000 621 280 109 25 chr1 10470545 10470784 -271722880 + MIR SINE MIR 2 260 -2 228 135 0 0 chr1 10471475 10471512 -271722152 + (GA)n Simple_repeat Simple_repeat 2 38 0 251 325 42 17 chr1 10473234 10473354 -271720310 - MER5A DNA MER1_type -66 123 1 268 271 125 0 chr1 10473359 10473455 -271720209 - MIR SINE MIR -106 156 49 236 358 65 16 chr1 10473499 10473622 -271720042 - L2 LINE L2 -37 3235 3107 495 330 112 32 chr1 10474779 10475064 -271718600 - L2 LINE L2 -1 3312 3005 234 0 0 0 chr1 10475737 10475763 -271717901 + (T)n Simple_repeat Simple_repeat 1 26 0 426 342 38 8 chr1 10476888 10477084 -271716580 - MIR SINE MIR -35 227 25 189 279 44 15 chr1 10477181 10477249 -271716415 + MIR3 SINE MIR 114 183 -25 1870 152 0 29 chr1 10477489 10477805 -271715859 + AluJo SINE Alu 5 311 -1 1858 122 50 0 chr1 10477823 10478101 -271715563 - AluSx SINE Alu -20 292 1 206 121 0 0 chr1 10478599 10478632 -271715032 + (TA)n Simple_repeat Simple_repeat 1 33 0 2266 106 0 3 chr1 10479520 10479823 -271713841 + AluSx SINE Alu 1 302 -10 192 77 0 0 chr1 10480669 10480695 -271712969 + (GGGA)n Simple_repeat Simple_repeat 4 29 0 982 204 11 0 chr1 10482306 10482482 -271711182 + MER45A DNA AcHobo 1 178 0 254 348 30 80 chr1 10482487 10482688 -271710976 + MIR SINE MIR 28 218 -44 180 286 48 16 chr1 10482860 10482923 -271710741 - MIR SINE MIR -117 145 81 2454 47 0 7 chr1 10484636 10484936 -271708728 - AluY SINE Alu -13 298 1 266 314 215 26 chr1 10485232 10485423 -271708241 - MIR SINE MIR -15 247 21 2217 92 0 7 chr1 10486072 10486365 -271707299 - AluSc SINE Alu -18 291 1 1415 157 79 59 chr1 10487081 10487386 -271706278 - AluJo SINE Alu -1 311 1 299 283 29 92 chr1 10487387 10487436 -271706228 + MIR SINE MIR 101 152 -110 2161 100 3 28 chr1 10487436 10487755 -271705909 + AluSx SINE Alu 1 311 -1 299 283 29 92 chr1 10487755 10487878 -271705786 + MIR SINE MIR 152 262 0 242 54 0 27 chr1 10487887 10487924 -271705740 + (TTA)n Simple_repeat Simple_repeat 2 37 0 896 164 10 70 chr1 10489510 10489572 -271704092 - MER53 DNA DNA 0 189 125 2127 101 0 3 chr1 10489572 10489882 -271703782 + AluSq SINE Alu 1 309 0 896 164 10 70 chr1 10489882 10490019 -271703645 - MER53 DNA DNA -64 125 1 762 252 118 50 chr1 10490672 10491233 -271702431 + L2 LINE L2 2710 3309 -4 715 310 139 20 chr1 10494087 10494324 -271699340 + L2 LINE L2 2439 2647 -666 2276 114 0 0 chr1 10494324 10494630 -271699034 + AluSx SINE Alu 1 306 -6 715 310 139 20 chr1 10494630 10495109 -271698555 + L2 LINE L2 2647 3243 -70 2392 100 0 0 chr1 10495139 10495450 -271698214 - AluSx SINE Alu -1 311 1 380 325 140 13 chr1 10497187 10497344 -271696320 - MIR3 SINE MIR -11 197 21 324 322 89 20 chr1 10500112 10500258 -271693406 + MIR3 SINE MIR 28 183 -25 406 338 51 19 chr1 10500443 10500600 -271693064 + L2 LINE L2 3106 3267 -5 2259 110 0 0 chr1 10500681 10500981 -271692683 - AluSx SINE Alu -12 300 1 203 343 14 14 chr1 10501129 10501199 -271692465 - L2 LINE L2 -9 3263 3194 462 364 66 0 chr1 10501259 10501457 -271692207 - MIR SINE MIR -24 238 28 216 0 0 0 chr1 10503023 10503047 -271690617 + (CA)n Simple_repeat Simple_repeat 1 24 0 982 247 18 5 chr1 10503074 10503293 -271690371 + MIR SINE MIR 2 223 -39 208 297 34 109 chr1 10503547 10503722 -271689942 - MIR SINE MIR -30 232 71 2093 116 0 0 chr1 10505018 10505336 -271688328 - AluSx SINE Alu 0 318 1 2277 96 3 0 chr1 10505677 10505979 -271687685 + AluSx SINE Alu 1 303 -9 580 191 17 0 chr1 10506101 10506216 -271687448 + MER3 DNA MER1_type 52 168 -41 2234 93 3 0 chr1 10506345 10506635 -271687029 - AluSx SINE Alu -21 291 1 528 302 61 14 chr1 10506637 10506849 -271686815 - MIR SINE MIR -6 256 35 1850 186 0 0 chr1 10506891 10507203 -271686461 - AluJb SINE Alu 0 312 1 22 0 0 0 chr1 10508132 10508154 -271685510 + AT_rich Low_complexity Low_complexity 1 22 0 348 24 0 0 chr1 10508476 10508517 -271685147 + (TCC)n Simple_repeat Simple_repeat 2 42 0 183 80 0 0 chr1 10509844 10509869 -271683795 + (GGAA)n Simple_repeat Simple_repeat 3 27 0 431 249 13 24 chr1 10513871 10514031 -271679633 + MIR SINE MIR 48 203 -59 414 260 6 17 chr1 10514410 10514591 -271679073 + (CA)n Simple_repeat Simple_repeat 2 180 0 267 294 5 27 chr1 10514710 10514894 -271678770 + (CA)n Simple_repeat Simple_repeat 1 180 0 279 305 6 6 chr1 10515119 10515293 -271678371 + (CA)n Simple_repeat Simple_repeat 1 174 0 198 0 0 0 chr1 10516098 10516120 -271677544 + (T)n Simple_repeat Simple_repeat 1 22 0 406 298 60 36 chr1 10517337 10517505 -271676159 + L1ME4a LINE L1 5893 6064 -57 445 329 119 9 chr1 10517540 10517759 -271675905 + MIR SINE MIR 9 251 -11 502 303 86 0 chr1 10518567 10518742 -271674922 - MIR SINE MIR -26 236 47 357 24 0 0 chr1 10520065 10520107 -271673557 + (TG)n Simple_repeat Simple_repeat 2 43 0 2327 89 3 0 chr1 10520409 10520712 -271672952 + AluSx SINE Alu 1 304 -8 267 341 108 28 chr1 10520738 10520952 -271672712 - MIR SINE MIR 0 262 32 566 246 149 0 chr1 10521152 10521327 -271672337 + MER3 DNA MER1_type 9 209 0 2049 118 0 7 chr1 10521373 10521684 -271671980 - AluSx SINE Alu 0 309 1 328 367 88 20 chr1 10521839 10522136 -271671528 - HAL1 LINE L1 -1182 1325 1009 228 331 149 1 chr1 10522710 10522878 -271670786 - MIR SINE MIR -54 154 3 496 265 88 7 chr1 10523378 10523514 -271670150 - MIR SINE MIR -37 225 79 448 276 26 2 chr1 10523897 10524079 -271669585 - MIR SINE MIR -50 212 28 192 214 0 0 chr1 10524451 10524507 -271669157 + (CA)n Simple_repeat Simple_repeat 2 57 0 351 96 0 0 chr1 10526343 10526395 -271667269 + (TC)n Simple_repeat Simple_repeat 1 52 0 290 87 22 0 chr1 10528542 10528588 -271665076 + (GA)n Simple_repeat Simple_repeat 2 48 0 180 77 0 0 chr1 10529133 10529159 -271664505 + (C)n Simple_repeat Simple_repeat 1 26 0 22 0 0 0 chr1 10529675 10529697 -271663967 + AT_rich Low_complexity Low_complexity 1 22 0 426 108 0 0 chr1 10530953 10531018 -271662646 + (TG)n Simple_repeat Simple_repeat 1 65 0 213 229 49 16 chr1 10531700 10531822 -271661842 + (CCCG)n Simple_repeat Simple_repeat 2 127 0 240 100 0 0 chr1 10533208 10533248 -271660416 + (CTCG)n Simple_repeat Simple_repeat 2 41 0 207 225 36 90 chr1 10534047 10534158 -271659506 - L2 LINE L2 -105 3208 3104 929 121 8 0 chr1 10534179 10534311 -271659353 + FLAM_C SINE Alu 1 133 0 310 257 14 0 chr1 10535409 10535483 -271658181 - MIR3 SINE MIR -37 171 97 758 246 62 7 chr1 10535553 10535768 -271657896 + MIR SINE MIR 36 261 -1 194 330 97 0 chr1 10535879 10535982 -271657682 - L2 LINE L2 0 3272 3160 677 283 148 30 chr1 10536542 10537014 -271656650 + L2 LINE L2 2760 3288 -25 261 337 71 0 chr1 10537443 10537541 -271656123 + L2 LINE L2 3167 3271 -1 553 241 68 19 chr1 10537659 10537821 -271655843 - MIR SINE MIR -3 259 90 2046 151 0 0 chr1 10538073 10538384 -271655280 + AluSx SINE Alu 1 311 -1 2274 94 0 0 chr1 10538673 10538971 -271654693 - AluSx SINE Alu -14 298 1 909 269 76 64 chr1 10539165 10539745 -271653919 - L1ME4a LINE L1 -1 6120 5534 201 184 0 0 chr1 10540433 10540471 -271653193 + MIR3 SINE MIR 160 197 -11 354 254 136 104 chr1 10541544 10541831 -271651833 + L2 LINE L2 2832 3127 -145 2461 80 0 0 chr1 10541899 10542210 -271651454 - AluSx SINE Alu -1 311 1 753 276 81 0 chr1 10542230 10542440 -271651224 + MIR SINE MIR 36 262 0 2283 78 3 0 chr1 10542904 10543198 -271650466 + AluSq SINE Alu 1 295 -18 292 254 41 107 chr1 10543301 10543423 -271650241 - MIR SINE MIR -75 133 20 611 232 7 0 chr1 10543689 10543977 -271649687 + (TCCA)n Simple_repeat Simple_repeat 1 290 0 810 174 0 0 chr1 10544015 10544187 -271649477 + (TCCA)n Simple_repeat Simple_repeat 2 173 0 288 240 10 83 chr1 10544187 10544283 -271649381 - L2 LINE L2 0 3272 3184 415 315 0 15 chr1 10544374 10544504 -271649160 + MIR3 SINE MIR 31 158 -50 747 283 50 5 chr1 10545396 10545615 -271648049 + MIR SINE MIR 33 261 -1 218 333 39 0 chr1 10545633 10545711 -271647953 + MIR3 SINE MIR 106 186 -22 212 363 63 37 chr1 10546138 10546328 -271647336 - MIR SINE MIR -8 254 60 613 282 151 5 chr1 10547451 10547657 -271646007 + MIR SINE MIR 27 262 0 236 410 14 14 chr1 10547917 10548056 -271645608 + L2 LINE L2 3134 3272 0 1460 89 0 11 chr1 10548336 10548527 -271645137 + AluSx SINE Alu 1 189 -123 502 253 195 0 chr1 10548624 10548798 -271644866 + MIR SINE MIR 48 255 -7 194 81 27 0 chr1 10548798 10548835 -271644829 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 2168 97 0 7 chr1 10548835 10549124 -271644540 - AluSq SINE Alu -26 287 1 295 304 34 38 chr1 10549339 10549497 -271644167 - MIR3 SINE MIR -62 146 3 391 313 8 16 chr1 10550036 10550164 -271643500 - MIR SINE MIR -45 217 91 221 345 0 46 chr1 10550155 10550242 -271643422 + L2 LINE L2 3189 3271 -1 * 499 346 33 33 chr1 10550285 10550528 -271643136 - MIR SINE MIR -15 247 5 202 263 63 42 chr1 10551277 10551372 -271642292 - MIR3 SINE MIR -104 104 8 * 772 259 78 9 chr1 10551312 10551544 -271642120 + MIR SINE MIR 11 258 -4 428 255 19 0 chr1 10551625 10551731 -271641933 - MER81 DNA DNA -1 113 6 234 313 108 0 chr1 10552320 10552403 -271641261 - MIR SINE MIR -60 202 111 295 300 194 50 chr1 10552932 10553092 -271640572 - MIR SINE MIR -44 218 36 484 289 69 39 chr1 10553126 10553330 -271640334 + MIR SINE MIR 18 227 -35 180 347 124 4 chr1 10554006 10554231 -271639433 + L2 LINE L2 2723 2974 -340 195 135 19 115 chr1 10554430 10554482 -271639182 - L2 LINE L2 0 3313 3267 195 319 44 35 chr1 10554598 10554711 -271638953 + L2 LINE L2 3141 3254 -18 657 96 0 0 chr1 10554743 10554837 -271638827 + (TTCC)n Simple_repeat Simple_repeat 3 96 0 2273 115 0 0 chr1 10554837 10555149 -271638515 - AluSx SINE Alu 0 312 1 679 279 90 21 chr1 10555896 10556129 -271637535 + MIR SINE MIR 2 250 -12 215 228 0 35 chr1 10556480 10556537 -271637127 + G-rich Low_complexity Low_complexity 2 56 0 195 314 57 29 chr1 10556823 10556928 -271636736 + MIR SINE MIR 85 192 -70 373 220 189 30 chr1 10557147 10557279 -271636385 - MIR3 SINE MIR -53 155 3 1945 152 7 3 chr1 10557672 10557981 -271635683 - AluSx SINE Alu -2 310 1 259 349 106 8 chr1 10558037 10558169 -271635495 - MIR SINE MIR -62 200 56 316 358 25 31 chr1 10558201 10558363 -271635301 + L2 LINE L2 2894 3054 -218 186 43 0 0 chr1 10558371 10558394 -271635270 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 576 214 9 0 chr1 10558395 10558507 -271635157 - L2 LINE L2 -14 3299 3187 2426 87 0 0 chr1 10558641 10558953 -271634711 - AluSx SINE Alu 0 312 1 1926 135 10 7 chr1 10558956 10559260 -271634404 - AluJb SINE Alu -7 305 1 579 269 16 42 chr1 10559508 10559701 -271633963 + MIR3 SINE MIR 15 202 -6 388 269 134 47 chr1 10560201 10560350 -271633314 - MIR SINE MIR 0 262 101 1919 140 24 3 chr1 10560415 10560707 -271632957 + AluSx SINE Alu 1 298 -14 318 354 0 0 chr1 10561445 10561541 -271632123 + L1M4 LINE L1 3074 3169 -2977 354 291 28 31 chr1 10562063 10562256 -271631408 + MIR SINE MIR 34 226 -36 611 269 76 6 chr1 10562263 10562434 -271631230 - MIR SINE MIR -1 261 79 2189 107 0 0 chr1 10563045 10563343 -271630321 + AluSx SINE Alu 1 298 -14 37 0 0 21 chr1 10563359 10563372 -271630292 + AT_rich Low_complexity Low_complexity 1 13 -34 2187 103 0 3 chr1 10563372 10563663 -271630001 - AluSg SINE Alu -20 290 1 37 0 0 21 chr1 10563663 10563697 -271629967 + AT_rich Low_complexity Low_complexity 13 47 0 516 278 14 28 chr1 10563866 10564010 -271629654 - MIR SINE MIR -113 149 8 255 236 0 0 chr1 10564127 10564182 -271629482 + (TGAA)n Simple_repeat Simple_repeat 1 55 0 356 292 102 7 chr1 10564184 10564321 -271629343 - MIR SINE MIR -75 187 38 225 0 0 0 chr1 10565771 10565796 -271627868 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1624 158 0 45 chr1 10565855 10566165 -271627499 + AluJb SINE Alu 1 296 -16 356 365 105 30 chr1 10566407 10566607 -271627057 + L1MC4a LINE L1 5721 5935 -1873 533 281 95 50 chr1 10567526 10567768 -271625896 + MIR SINE MIR 8 260 -2 296 242 0 0 chr1 10568277 10568343 -271625321 - MIR SINE MIR -138 124 59 2187 125 0 0 chr1 10568878 10569190 -271624474 - AluSx SINE Alu 0 312 1 212 200 13 53 chr1 10569979 10570054 -271623610 + L2 LINE L2 2967 3038 -234 2011 155 0 0 chr1 10570201 10570505 -271623159 + AluJb SINE Alu 1 304 -8 400 274 132 57 chr1 10570505 10570717 -271622947 - L2 LINE L2 -1 3312 3085 1032 151 0 0 chr1 10570812 10570991 -271622673 + (TTCA)n Simple_repeat Simple_repeat 1 179 0 1089 136 0 0 chr1 10570992 10571169 -271622495 + (CTCA)n Simple_repeat Simple_repeat 3 179 0 285 98 0 0 chr1 10571170 10571211 -271622453 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 486 289 111 0 chr1 10572303 10572483 -271621181 - MIR SINE MIR 0 262 63 215 167 0 0 chr1 10573144 10573180 -271620484 + MIR SINE MIR 110 145 -63 479 297 180 28 chr1 10573182 10573332 -271620332 - L2 LINE L2 -5 3308 3182 2150 92 0 7 chr1 10573332 10573639 -271620025 + AluSx SINE Alu 1 305 0 479 297 180 28 chr1 10573639 10573810 -271619854 - L2 LINE L2 -131 3182 2937 255 170 21 0 chr1 10574133 10574180 -271619484 - MIR3 SINE MIR -52 156 109 949 188 0 0 chr1 10574490 10574676 -271618988 + FRAM SINE Alu 1 176 0 550 244 6 70 chr1 10574744 10574916 -271618748 + MIR SINE MIR 26 186 -76 343 336 52 0 chr1 10575020 10575136 -271618528 - MIR SINE MIR -124 138 17 222 336 8 0 chr1 10575981 10576103 -271617561 + (TG)n Simple_repeat Simple_repeat 1 123 0 2334 90 0 10 chr1 10577433 10577744 -271615920 + AluY SINE Alu 1 308 -3 463 247 11 144 chr1 10578496 10578767 -271614897 - MIR SINE MIR -9 253 19 1377 271 129 0 chr1 10578929 10578955 -271614709 + L2 LINE L2 2357 2378 -936 2233 95 3 0 chr1 10578955 10579251 -271614413 - AluSx SINE Alu -15 297 1 1377 271 129 0 chr1 10579251 10579737 -271613927 + L2 LINE L2 2378 2935 -379 317 280 32 96 chr1 10579864 10580032 -271613632 + L2 LINE L2 2945 3094 -219 1668 190 0 14 chr1 10580032 10580360 -271613304 - AluJo SINE Alu 0 326 3 317 280 32 96 chr1 10580360 10580440 -271613224 + L2 LINE L2 3094 3178 -135 1842 216 70 19 chr1 10580474 10581099 -271612565 - L1MEc LINE L1 -4948 1448 792 1697 188 3 0 chr1 10581116 10581403 -271612261 - AluJb SINE Alu -24 288 1 727 152 7 0 chr1 10581403 10581541 -271612123 - L1MC3 LINE L1 -6 7779 7641 621 132 0 99 chr1 10581541 10581662 -271612002 + FRAM SINE Alu 65 173 -3 643 218 58 0 chr1 10581668 10581824 -271611840 - L1MD3 LINE L1 -146 7849 7685 1085 148 94 20 chr1 10581824 10582027 -271611637 - AluJo SINE Alu -16 296 79 3427 215 89 30 chr1 10582027 10582649 -271611015 - L1MC3 LINE L1 -308 7477 6893 2028 152 7 0 chr1 10582649 10582959 -271610705 - AluJb SINE Alu 0 312 1 1450 167 101 17 chr1 10582965 10583253 -271610411 - AluJb SINE Alu 0 312 1 3427 215 89 30 chr1 10583253 10583633 -271610031 - L1MC3 LINE L1 -896 6889 6408 924 251 8 4 chr1 10583637 10583876 -271609788 - L1MEc LINE L1 -5608 788 549 771 245 60 78 chr1 10583884 10584093 -271609571 - L1MEc LINE L1 -5984 412 201 1922 95 71 10 chr1 10584093 10584387 -271609277 - AluJb SINE Alu 0 312 1 771 245 60 78 chr1 10584387 10584487 -271609177 - L1MEc LINE L1 -6195 201 109 752 208 0 0 chr1 10584487 10584612 -271609052 - FLAM_A SINE Alu -8 125 1 771 245 60 78 chr1 10584612 10584685 -271608979 - L1MEc LINE L1 -6287 109 36 308 292 34 11 chr1 10584685 10584774 -271608890 - L2 LINE L2 -43 3270 3180 1995 125 10 7 chr1 10584830 10585125 -271608539 + AluSx SINE Alu 1 296 -16 260 125 21 0 chr1 10585125 10585173 -271608491 - Cheshire DNA MER1_type -29 2391 2343 * 1648 198 55 0 chr1 10585170 10585498 -271608166 - Cheshire DNA MER1_type -2074 346 1 2046 150 0 3 chr1 10585545 10585858 -271607806 + AluSx SINE Alu 1 312 0 256 381 121 0 chr1 10585858 10586031 -271607633 - L2 LINE L2 -136 3177 2984 205 281 207 0 chr1 10586067 10586149 -271607515 + L2 LINE L2 3133 3231 -41 327 283 29 9 chr1 10586281 10586418 -271607246 + MIR SINE MIR 11 146 -62 339 297 94 90 chr1 10587045 10587301 -271606363 + L2 LINE L2 3015 3271 -1 248 288 34 103 chr1 10587311 10587457 -271606207 - MIR3 SINE MIR -38 170 35 187 217 0 0 chr1 10587465 10587512 -271606152 + MIR SINE MIR 102 148 -60 1985 118 7 0 chr1 10587727 10588006 -271605658 - AluSx SINE Alu -16 296 16 249 340 64 39 chr1 10589006 10589209 -271604455 - L2 LINE L2 -113 3159 2952 274 278 0 10 chr1 10589757 10589854 -271603810 + (CACCAT)n Simple_repeat Simple_repeat 6 101 0 309 200 0 59 chr1 10589874 10590009 -271603655 + (CACCAT)n Simple_repeat Simple_repeat 1 127 0 362 240 0 7 chr1 10590037 10590183 -271603481 + (CCA)n Simple_repeat Simple_repeat 1 145 0 594 236 0 21 chr1 10590231 10590518 -271603146 + (CACCAT)n Simple_repeat Simple_repeat 1 281 0 608 240 7 10 chr1 10590569 10590867 -271602797 + (CACCAT)n Simple_repeat Simple_repeat 1 297 0 2382 101 93 21 chr1 10590911 10591176 -271602488 + MER83 LTR ERV1 1 308 -140 2039 122 54 35 chr1 10591176 10591247 -271602417 - THE1C LTR MaLR 0 375 307 2296 107 0 0 chr1 10591247 10591556 -271602108 + AluY SINE Alu 2 310 -1 2039 122 54 35 chr1 10591556 10591852 -271601812 - THE1C LTR MaLR -68 307 1 2382 101 93 21 chr1 10591852 10592004 -271601660 + MER83 LTR ERV1 308 448 0 306 246 0 26 chr1 10592007 10592121 -271601543 + (CAT)n Simple_repeat Simple_repeat 2 112 0 617 296 182 0 chr1 10592279 10592647 -271601017 + L2 LINE L2 2838 3272 0 201 141 16 31 chr1 10594353 10594417 -271599247 + CT-rich Low_complexity Low_complexity 1 63 0 335 261 0 18 chr1 10594442 10594553 -271599111 + CT-rich Low_complexity Low_complexity 1 109 0 283 285 227 8 chr1 10595456 10595698 -271597966 - L2 LINE L2 0 3313 3019 502 259 16 86 chr1 10595820 10595943 -271597721 - MIR SINE MIR -6 256 126 2257 117 0 0 chr1 10595943 10596250 -271597414 + AluSx SINE Alu 3 309 -3 1615 181 10 10 chr1 10596255 10596553 -271597111 + AluJb SINE Alu 1 298 -14 502 259 16 86 chr1 10596553 10596698 -271596966 - MIR SINE MIR -140 122 5 301 374 94 24 chr1 10597488 10598082 -271595582 - L2 LINE L2 -337 2977 2342 309 254 79 35 chr1 10598358 10598472 -271595192 + MIR3 SINE MIR 78 196 -12 469 272 7 22 chr1 10599444 10599580 -271594084 + MIR SINE MIR 84 217 -45 207 100 0 0 chr1 10600118 10600148 -271593516 + (TG)n Simple_repeat Simple_repeat 1 30 0 308 153 0 14 chr1 10601071 10601143 -271592521 + (TG)n Simple_repeat Simple_repeat 2 72 0 256 272 0 43 chr1 10601405 10601497 -271592167 + GA-rich Low_complexity Low_complexity 2 89 0 291 140 0 0 chr1 10602102 10602152 -271591512 + (TC)n Simple_repeat Simple_repeat 2 51 0 450 0 0 0 chr1 10602599 10602649 -271591015 + (CAGA)n Simple_repeat Simple_repeat 3 52 0 226 83 0 62 chr1 10602726 10602774 -271590890 + (GGAGA)n Simple_repeat Simple_repeat 1 45 0 240 137 6 93 chr1 10602829 10602990 -271590674 + (GGAGA)n Simple_repeat Simple_repeat 1 147 0 201 238 16 0 chr1 10603125 10603188 -271590476 + C-rich Low_complexity Low_complexity 4 67 0 184 390 48 19 chr1 10603574 10603784 -271589880 + L2 LINE L2 3012 3227 -45 29 78 0 0 chr1 10604030 10604094 -271589570 + GC_rich Low_complexity Low_complexity 1 64 0 35 24 0 0 chr1 10604124 10604166 -271589498 + GC_rich Low_complexity Low_complexity 1 42 0 313 289 11 5 chr1 10605190 10605311 -271588353 - MIR SINE MIR -62 146 34 234 261 31 0 chr1 10605432 10605497 -271588167 - Charlie8 DNA MER1_type -3 2414 2348 321 288 76 8 chr1 10605622 10605740 -271587924 + MIR SINE MIR 46 171 -91 326 258 136 50 chr1 10605851 10606072 -271587592 - LTR16C LTR ERVL -59 432 193 252 250 53 40 chr1 10606404 10606480 -271587184 - L2 LINE L2 -188 3084 3008 262 333 40 32 chr1 10606802 10606928 -271586736 - MER5A DNA MER1_type -35 154 28 390 204 0 0 chr1 10607424 10607532 -271586132 + (TTCA)n Simple_repeat Simple_repeat 2 109 0 388 300 36 29 chr1 10607532 10607672 -271585992 - L2 LINE L2 0 3313 3173 2181 91 0 3 chr1 10608058 10608368 -271585296 - AluY SINE Alu 0 309 1 2160 121 0 9 chr1 10608380 10608695 -271584969 - AluSx SINE Alu 0 312 1 313 320 146 15 chr1 10608833 10609039 -271584625 - L2 LINE L2 -205 3067 2835 729 258 57 39 chr1 10609468 10609702 -271583962 - MIR SINE MIR -17 245 11 626 273 12 0 chr1 10610390 10610555 -271583109 - MIR3 SINE MIR 0 208 42 2112 131 0 0 chr1 10610580 10610885 -271582779 + AluSx SINE Alu 1 305 -7 282 299 58 0 chr1 10611056 10611143 -271582521 + MIR SINE MIR 95 186 -76 180 213 0 43 chr1 10611417 10611464 -271582200 - MIR SINE MIR -69 139 95 192 288 62 12 chr1 10611558 10611638 -271582026 + MIR SINE MIR 19 102 -160 1204 128 35 35 chr1 10612426 10612620 -271581044 - AluJb SINE Alu 0 316 120 2245 103 3 0 chr1 10612620 10612920 -271580744 + AluSp SINE Alu 1 301 -12 1204 128 35 35 chr1 10612920 10612956 -271580708 - AluJb SINE Alu -195 121 86 2534 184 37 29 chr1 10612975 10613465 -271580199 - L1MB5 LINE L1 0 6174 5681 2166 107 0 3 chr1 10613680 10613978 -271579686 - AluSx SINE Alu -15 297 1 191 274 44 80 chr1 10614132 10614245 -271579419 - MIR3 SINE MIR -2 206 98 268 259 49 12 chr1 10614334 10614415 -271579249 - MIR SINE MIR -75 187 104 457 328 79 11 chr1 10614668 10614857 -271578807 + MIR SINE MIR 50 251 -11 281 252 71 79 chr1 10615752 10615879 -271577785 - MIR SINE MIR -65 143 18 1591 167 10 33 chr1 10615896 10616196 -271577468 + AluJb SINE Alu 1 293 -19 2053 104 0 31 chr1 10616198 10616514 -271577150 + AluSg SINE Alu 1 307 0 264 228 76 13 chr1 10616580 10616659 -271577005 + MIR SINE MIR 2 85 -177 217 354 13 13 chr1 10616921 10617000 -271576664 + L2 LINE L2 3142 3220 -52 1273 227 181 83 chr1 10617048 10617307 -271576357 + L2 LINE L2 1901 2133 -1181 2074 138 0 0 chr1 10617307 10617603 -271576061 - AluJb SINE Alu -16 296 1 1273 227 181 83 chr1 10617603 10617636 -271576028 + L2 LINE L2 2133 2161 -1153 1170 226 78 10 chr1 10617636 10617932 -271575732 - MER33 DNA MER1_type -4 320 5 1273 227 181 83 chr1 10617932 10618155 -271575509 + L2 LINE L2 2161 2361 -953 1999 128 0 0 chr1 10618155 10618457 -271575207 + AluSq SINE Alu 1 302 0 1273 227 181 83 chr1 10618457 10618670 -271574994 + L2 LINE L2 2361 2552 -762 1459 162 23 53 chr1 10618670 10618972 -271574692 + AluSx SINE Alu 6 298 -14 1273 227 181 83 chr1 10618972 10619053 -271574611 + L2 LINE L2 2552 2793 -521 342 253 54 133 chr1 10619080 10619320 -271574344 + L2 LINE L2 2912 3189 -124 2226 110 0 0 chr1 10619320 10619628 -271574036 - AluSc SINE Alu 0 309 2 342 253 54 133 chr1 10619628 10619743 -271573921 + L2 LINE L2 3189 3312 -1 705 307 173 18 chr1 10619747 10619988 -271573676 - L1M4 LINE L1 -1195 4951 4749 1750 128 55 10 chr1 10619988 10620278 -271573386 - AluSq SINE Alu -10 303 1 1832 145 20 20 chr1 10620280 10620453 -271573211 - AluJb SINE Alu -8 304 129 198 0 0 0 chr1 10620453 10620475 -271573189 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 1832 145 20 20 chr1 10620475 10620605 -271573059 - AluJb SINE Alu -182 130 1 705 307 173 18 chr1 10620605 10620754 -271572910 - L1M4 LINE L1 -1397 4749 4497 788 223 83 0 chr1 10620814 10620971 -271572693 - FAM SINE Alu -5 170 1 21 71 0 0 chr1 10620981 10621023 -271572641 + AT_rich Low_complexity Low_complexity 1 42 0 734 313 40 48 chr1 10621204 10621465 -271572199 + L1ME4a LINE L1 5320 5582 -539 2205 119 3 0 chr1 10621465 10621776 -271571888 - AluSx SINE Alu 0 312 1 1956 158 7 0 chr1 10621779 10622082 -271571582 - AluJb SINE Alu -7 305 1 734 313 40 48 chr1 10622082 10622435 -271571229 + L1ME4a LINE L1 5584 5933 -188 2411 77 0 10 chr1 10622442 10622755 -271570909 + AluY SINE Alu 2 311 0 3681 183 21 37 chr1 10622756 10623129 -271570535 + L1MB8 LINE L1 5296 5673 -505 2176 120 3 0 chr1 10623129 10623430 -271570234 + AluSx SINE Alu 1 302 -10 3681 183 21 37 chr1 10623430 10623880 -271569784 + L1MB8 LINE L1 5673 6106 -72 1922 164 0 0 chr1 10623880 10624173 -271569491 - AluJo SINE Alu -19 293 1 3681 183 21 37 chr1 10624173 10624245 -271569419 + L1MB8 LINE L1 6106 6178 0 1153 137 41 65 chr1 10624360 10624548 -271569116 + MER96B DNA MER1_type? 131 313 -104 1570 111 93 52 chr1 10624548 10624690 -271568974 + AluJb SINE Alu 1 136 -174 2222 101 3 3 chr1 10624690 10624996 -271568668 + AluSx SINE Alu 1 306 -6 1570 111 93 52 chr1 10624996 10625152 -271568512 + AluJb SINE Alu 136 310 0 1153 137 41 65 chr1 10625152 10625253 -271568411 + MER96B DNA MER1_type? 313 415 -2 30 117 0 0 chr1 10625498 10625661 -271568003 + GC_rich Low_complexity Low_complexity 1 163 0 26 50 0 0 chr1 10625838 10625878 -271567786 + GC_rich Low_complexity Low_complexity 1 40 0 195 370 63 16 chr1 10625942 10626131 -271567533 + L2 LINE L2 2869 3066 -247 382 237 53 9 chr1 10626285 10626399 -271567265 + MIR SINE MIR 19 137 -125 522 266 345 8 chr1 10626653 10627244 -271566420 + L2 LINE L2 1527 2316 -998 226 235 12 129 chr1 10627899 10627984 -271565680 - MER91A DNA MER1_type -65 75 1 923 272 60 23 chr1 10627996 10628349 -271565315 - MLT1I LTR MaLR 0 409 44 1571 231 119 39 chr1 10628370 10628507 -271565157 + L2 LINE L2 2315 2440 -873 2074 96 13 42 chr1 10628507 10628820 -271564844 + AluSq SINE Alu 1 304 -9 1571 231 119 39 chr1 10628820 10629436 -271564228 + L2 LINE L2 2440 3124 -189 325 367 92 15 chr1 10629443 10629778 -271563886 - L1M4c LINE L1 -5077 1307 947 270 0 0 0 chr1 10629778 10629808 -271563856 + (TCCC)n Simple_repeat Simple_repeat 2 31 0 2085 147 0 3 chr1 10629826 10630138 -271563526 - AluSx SINE Alu -1 311 1 248 269 82 45 chr1 10630159 10630293 -271563371 + L2 LINE L2 3113 3251 -62 959 233 75 0 chr1 10630316 10630454 -271563210 + MIR SINE MIR 5 131 -131 2172 114 0 0 chr1 10630454 10630751 -271562913 + AluSx SINE Alu 1 297 -15 959 233 75 0 chr1 10630751 10630852 -271562812 + MIR SINE MIR 131 262 0 452 254 17 76 chr1 10630861 10630964 -271562700 + L1ME4a LINE L1 5616 5724 -397 2238 97 3 16 chr1 10630964 10631301 -271562363 - AluSp SINE Alu 0 313 1 452 254 17 76 chr1 10631301 10631433 -271562231 + L1ME4a LINE L1 5724 5837 -284 1950 142 0 19 chr1 10631433 10631743 -271561921 - AluJb SINE Alu 0 312 9 382 341 26 70 chr1 10631833 10632103 -271561561 + L1ME4a LINE L1 5861 6118 -3 2337 99 3 0 chr1 10632240 10632552 -271561112 + AluSq SINE Alu 1 313 0 2159 129 0 0 chr1 10632823 10633168 -271560496 - AluSx SINE Alu 0 345 1 587 191 0 0 chr1 10633311 10633421 -271560243 - MER21B LTR ERV1 -423 440 331 261 75 0 0 chr1 10634851 10634891 -271558773 + (TG)n Simple_repeat Simple_repeat 2 41 0 1991 130 10 3 chr1 10636124 10636423 -271557241 + AluSx SINE Alu 1 301 -11 330 87 0 0 chr1 10636423 10636469 -271557195 + (GGAA)n Simple_repeat Simple_repeat 1 46 0 237 203 0 12 chr1 10636490 10636551 -271557113 - MIR SINE MIR -62 146 107 186 43 0 0 chr1 10636606 10636629 -271557035 + (GGA)n Simple_repeat Simple_repeat 1 23 0 375 296 79 37 chr1 10636708 10636897 -271556767 + MIR SINE MIR 20 216 -46 229 319 0 29 chr1 10638980 10639049 -271554615 - MIR SINE MIR -79 183 117 196 245 41 0 chr1 10639809 10639858 -271553806 - MIR SINE MIR -95 167 117 2205 132 0 0 chr1 10639933 10640244 -271553420 - AluSx SINE Alu -1 311 1 318 265 48 0 chr1 10640252 10640335 -271553329 + L2 LINE L2 3227 3313 0 589 303 39 6 chr1 10641309 10641487 -271552177 + MIR SINE MIR 21 204 -58 22 0 0 0 chr1 10642193 10642215 -271551449 + GC_rich Low_complexity Low_complexity 1 22 0 291 402 21 5 chr1 10644970 10645116 -271548548 - MIR SINE MIR -62 146 16 409 308 77 85 chr1 10645171 10645813 -271547851 + L2 LINE L2 2623 3264 -49 2227 101 34 0 chr1 10645847 10646144 -271547520 + AluSx SINE Alu 1 307 -5 535 253 20 13 chr1 10646592 10646742 -271546922 + MIR SINE MIR 35 185 -77 412 285 134 17 chr1 10647672 10647844 -271545820 + MIR SINE MIR 1 192 -70 330 204 0 0 chr1 10647957 10648050 -271545614 + (CA)n Simple_repeat Simple_repeat 1 93 0 341 315 9 9 chr1 10648745 10648853 -271544811 + MIR SINE MIR 47 154 -108 2290 109 3 0 chr1 10648905 10649207 -271544457 + AluSx SINE Alu 1 303 -9 314 357 14 14 chr1 10649342 10649482 -271544182 - MIR SINE MIR -77 185 46 245 286 71 14 chr1 10649721 10649791 -271543873 - MIR3 SINE MIR -23 185 112 355 281 91 78 chr1 10650017 10650348 -271543316 - L2 LINE L2 -96 3176 2842 1877 228 71 43 chr1 10650360 10650939 -271542725 - MLT1G1 LTR MaLR 0 595 1 385 275 109 0 chr1 10651710 10651848 -271541816 + L2 LINE L2 3119 3271 -1 2389 74 0 0 chr1 10651876 10652197 -271541467 + AluY SINE Alu 1 321 0 289 222 79 0 chr1 10652199 10652262 -271541402 + L2 LINE L2 3241 3308 -5 279 259 49 25 chr1 10652283 10652364 -271541300 + L2 LINE L2 3188 3270 -2 324 128 0 0 chr1 10653614 10653661 -271540003 + L2 LINE L2 3264 3310 -3 421 292 39 0 chr1 10653820 10653950 -271539714 + MIR SINE MIR 99 233 -29 1921 181 7 0 chr1 10654178 10654488 -271539176 + AluJb SINE Alu 1 312 0 300 348 84 0 chr1 10654492 10654647 -271539017 + HAL1 LINE L1 1140 1307 -1200 217 301 12 12 chr1 10654736 10654819 -271538845 - MIR SINE MIR -97 165 83 617 259 5 49 chr1 10654914 10655119 -271538545 - MIR SINE MIR -17 245 50 284 212 254 8 chr1 10655203 10655321 -271538343 - MER5B DNA MER1_type -4 174 28 503 200 150 50 chr1 10655378 10655538 -271538126 - MER5A DNA MER1_type -7 182 7 393 255 11 0 chr1 10655552 10655646 -271538018 - MER5B DNA MER1_type 0 178 84 515 207 39 67 chr1 10655661 10655776 -271537888 + MER5B DNA MER1_type 3 113 -65 2553 60 0 3 chr1 10655776 10656077 -271537587 - AluY SINE Alu -11 300 1 515 207 39 67 chr1 10656077 10656140 -271537524 + MER5B DNA MER1_type 113 176 -2 1818 115 31 15 chr1 10656256 10656517 -271537147 - AluSq SINE Alu -7 306 42 2460 97 3 0 chr1 10656535 10656845 -271536819 - AluSq SINE Alu -2 311 1 681 292 69 15 chr1 10657462 10657826 -271535838 - L1MC4a LINE L1 -107 6014 5629 330 187 93 0 chr1 10658133 10658208 -271535456 - LTR67 LTR ERVL -5 552 471 2536 65 0 0 chr1 10658208 10658500 -271535164 + AluY SINE Alu 1 292 -19 1486 160 14 98 chr1 10658582 10658952 -271534712 + L1ME LINE L1 5039 5439 -727 2480 96 0 3 chr1 10658952 10659266 -271534398 + AluSp SINE Alu 1 313 0 1486 160 14 98 chr1 10659266 10659363 -271534301 + L1ME LINE L1 5439 5457 -709 2242 105 3 17 chr1 10659363 10659658 -271534006 + AluSx SINE Alu 1 291 -21 1486 160 14 98 chr1 10659658 10659801 -271533863 + L1ME LINE L1 5457 5610 -556 * 3244 157 30 30 chr1 10659795 10660285 -271533379 - L1MB5 LINE L1 -247 5927 5435 1833 162 17 10 chr1 10660285 10660582 -271533082 - AluJb SINE Alu -13 299 1 3244 157 30 30 chr1 10660582 10660761 -271532903 - L1MB5 LINE L1 -738 5436 5258 1873 143 14 27 chr1 10660772 10661065 -271532599 - AluJo SINE Alu -12 300 12 1961 201 85 20 chr1 10661074 10661186 -271532478 - L1MB5 LINE L1 -1322 4824 4721 2320 129 8 18 chr1 10661186 10661580 -271532084 + MLT1B LTR MaLR 1 390 0 1961 201 85 20 chr1 10661580 10661974 -271531690 - L1MB5 LINE L1 -1425 4721 4285 775 170 133 32 chr1 10661974 10662018 -271531646 + MER63 DNA MER1_type 102 140 -921 2118 139 7 0 chr1 10662018 10662313 -271531351 + AluSx SINE Alu 1 297 -15 775 170 133 32 chr1 10662313 10662456 -271531208 + MER63 DNA MER1_type 140 308 -753 1988 135 25 0 chr1 10662472 10662754 -271530910 + AluJb SINE Alu 1 289 -23 2056 92 0 0 chr1 10662774 10663023 -271530641 + AluSg SINE Alu 1 249 -61 216 0 0 0 chr1 10663023 10663047 -271530617 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 650 261 153 5 chr1 10663124 10663346 -271530318 + MER110A LTR ERV1 56 310 -158 372 121 0 0 chr1 10663354 10663412 -271530252 - AluSq SINE Alu -1 300 243 1527 73 0 11 chr1 10663415 10663606 -271530058 - AluSq SINE Alu -124 189 1 687 228 37 7 chr1 10663606 10663816 -271529848 + MER110A LTR ERV1 272 491 0 * 2282 181 12 2 chr1 10663816 10664229 -271529435 + MER63 DNA MER1_type 433 849 -212 649 195 0 9 chr1 10664231 10664344 -271529320 + FLAM_C SINE Alu 6 117 -26 360 0 0 0 chr1 10664347 10664387 -271529277 + (TAA)n Simple_repeat Simple_repeat 2 41 0 911 176 25 42 chr1 10664391 10664466 -271529198 + MER63 DNA MER1_type 827 902 -158 1986 166 7 0 chr1 10664466 10664774 -271528890 - AluJb SINE Alu -2 310 1 911 176 25 42 chr1 10664774 10664817 -271528847 + MER63 DNA MER1_type 902 944 -116 2560 43 0 20 chr1 10664817 10665116 -271528548 - AluY SINE Alu -18 293 1 911 176 25 42 chr1 10665116 10665234 -271528430 + MER63 DNA MER1_type 944 1060 0 465 264 88 7 chr1 10665234 10665382 -271528282 + L1ME1 LINE L1 5999 6158 -8 236 324 20 29 chr1 10665491 10665593 -271528071 - LTR67 LTR ERVL -193 364 264 274 224 0 47 chr1 10665622 10665707 -271527957 - MLT1J LTR MaLR -321 190 110 * 655 281 0 18 chr1 10665649 10665820 -271527844 - LTR67 LTR ERVL -386 171 4 185 296 56 0 chr1 10666107 10666161 -271527503 - L2 LINE L2 -214 3058 3002 2143 133 0 0 chr1 10666170 10666463 -271527201 + AluSx SINE Alu 1 293 -19 2389 84 3 16 chr1 10666474 10666783 -271526881 + AluSq SINE Alu 1 305 -8 2352 79 3 0 chr1 10666783 10667074 -271526590 + AluY SINE Alu 1 292 -19 1695 175 3 43 chr1 10667263 10667388 -271526276 + AluJo SINE Alu 1 129 -183 2250 101 0 17 chr1 10667388 10667685 -271525979 - AluSg SINE Alu -18 292 1 1695 175 3 43 chr1 10667685 10667862 -271525802 + AluJo SINE Alu 129 291 -21 1579 156 13 80 chr1 10667882 10668023 -271525641 + L1MB3 LINE L1 5820 5969 -214 2315 133 37 42 chr1 10668023 10668214 -271525450 + MSTB LTR MaLR 1 191 -235 2136 120 7 0 chr1 10668214 10668513 -271525151 + AluSx SINE Alu 1 301 -11 2162 134 0 0 chr1 10668521 10668826 -271524838 + AluSx SINE Alu 1 305 -7 2315 133 37 42 chr1 10668826 10669053 -271524611 + MSTB LTR MaLR 198 426 0 1579 156 13 80 chr1 10669053 10669251 -271524413 + L1MB3 LINE L1 5969 6132 -51 761 156 31 0 chr1 10669251 10669379 -271524285 + FLAM_C SINE Alu 2 133 0 1579 156 13 80 chr1 10669379 10669428 -271524236 + L1MB3 LINE L1 6132 6183 0 195 47 23 47 chr1 10669442 10669470 -271524194 + (TA)n Simple_repeat Simple_repeat 2 29 -14 2419 65 3 0 chr1 10669470 10669762 -271523902 - AluY SINE Alu -18 293 1 2336 100 0 13 chr1 10669764 10670063 -271523601 - AluSx SINE Alu -17 295 1 195 47 23 47 chr1 10670063 10670074 -271523590 + (TA)n Simple_repeat Simple_repeat 30 43 0 315 71 0 0 chr1 10670080 10670122 -271523542 + (CA)n Simple_repeat Simple_repeat 2 43 0 1315 65 130 0 chr1 10670141 10670341 -271523323 - MER30 DNA MER1_type 0 230 5 340 246 0 116 chr1 10670512 10670650 -271523014 + L1MCa LINE L1 1995 2116 -4310 205 266 115 35 chr1 10670799 10670824 -271522840 - L2 LINE L2 -154 3118 3096 1876 134 0 0 chr1 10670824 10671078 -271522586 + AluSx SINE Alu 1 254 -58 205 266 115 35 chr1 10671078 10671165 -271522499 - L2 LINE L2 -176 3096 2997 736 220 13 98 chr1 10672594 10672830 -271520834 - MIR SINE MIR 0 262 47 191 261 43 0 chr1 10672936 10673005 -271520659 + L2 LINE L2 3150 3221 -51 324 94 0 0 chr1 10673011 10673064 -271520600 + (TTCA)n Simple_repeat Simple_repeat 4 56 0 207 182 0 23 chr1 10673100 10673144 -271520520 + MIR SINE MIR 106 148 -114 2288 110 3 0 chr1 10673146 10673446 -271520218 + AluSx SINE Alu 2 302 -10 2320 88 7 3 chr1 10673494 10673789 -271519875 + AluSx SINE Alu 4 299 -13 1143 166 37 9 chr1 10673790 10674007 -271519657 + MLT1B LTR MaLR 166 388 -2 197 277 0 0 chr1 10674010 10674057 -271519607 + MIR3 SINE MIR 134 180 -28 244 234 0 0 chr1 10674176 10674223 -271519441 + AluSx SINE Alu 247 293 -9 2179 97 4 4 chr1 10674247 10674526 -271519138 + AluSx SINE Alu 21 299 -13 845 235 36 18 chr1 10674527 10674748 -271518916 - MLT1C LTR MaLR -58 409 185 416 143 0 0 chr1 10674750 10674820 -271518844 - AluSc SINE Alu -4 305 236 297 83 7 13 chr1 10674821 10674885 -271518779 - AluSp SINE Alu -133 170 112 * 640 180 29 7 chr1 10674860 10674999 -271518665 - MLT1C LTR MaLR -280 187 46 1266 166 0 0 chr1 10675000 10675187 -271518477 - AluJb SINE Alu -14 298 112 2125 134 0 0 chr1 10675209 10675501 -271518163 + AluSx SINE Alu 8 299 -13 2294 112 0 6 chr1 10675830 10676142 -271517522 + AluSx SINE Alu 1 310 -2 1221 57 11 11 chr1 10676169 10676345 -271517319 + (GAAA)n Simple_repeat Simple_repeat 4 179 0 1461 174 70 40 chr1 10676358 10676656 -271517008 + AluJo SINE Alu 1 307 -5 908 169 62 0 chr1 10676656 10676816 -271516848 + AluJb SINE Alu 139 308 -4 363 78 0 0 chr1 10676816 10676867 -271516797 + (GA)n Simple_repeat Simple_repeat 1 51 0 477 50 0 0 chr1 10676867 10676927 -271516737 + (GGAA)n Simple_repeat Simple_repeat 4 63 0 927 231 27 60 chr1 10677098 10677396 -271516268 + Charlie4 DNA MER1_type 1 288 -1673 1934 78 0 0 chr1 10677423 10677653 -271516011 + AluSx SINE Alu 1 230 -82 180 296 0 0 chr1 10678226 10678270 -271515394 - MIR SINE MIR 0 262 219 24 60 0 30 chr1 10678270 10678294 -271515370 + AT_rich Low_complexity Low_complexity 1 24 -41 2240 108 0 10 chr1 10678294 10678609 -271515055 + AluSq SINE Alu 1 312 0 24 60 0 30 chr1 10678609 10678650 -271515014 + AT_rich Low_complexity Low_complexity 24 65 0 2067 94 85 51 chr1 10678660 10679012 -271514652 - THE1B LTR MaLR 0 364 1 1944 159 7 10 chr1 10679271 10679573 -271514091 + AluJb SINE Alu 1 301 -11 2292 110 3 10 chr1 10679906 10680214 -271513450 - AluSx SINE Alu 0 312 7 614 237 119 83 chr1 10680265 10680443 -271513221 - L2 LINE L2 -925 2389 2219 986 226 78 10 chr1 10680443 10680739 -271512925 + MER33 DNA MER1_type 5 320 -4 614 237 119 83 chr1 10680739 10680772 -271512892 - L2 LINE L2 -1095 2219 2189 2167 138 0 0 chr1 10680772 10681068 -271512596 + AluJb SINE Alu 1 296 -16 614 237 119 83 chr1 10681068 10681327 -271512337 - L2 LINE L2 -1125 2189 1901 197 329 13 26 chr1 10681375 10681451 -271512213 - L2 LINE L2 -52 3220 3146 247 216 81 14 chr1 10681721 10681795 -271511869 - MIR SINE MIR -182 80 2 2154 101 0 31 chr1 10681861 10682177 -271511487 - AluSg SINE Alu 0 307 1 1660 167 10 33 chr1 10682179 10682479 -271511185 - AluJb SINE Alu -19 293 1 240 250 70 86 chr1 10682496 10682624 -271511040 + MIR SINE MIR 18 143 -65 398 328 79 11 chr1 10683520 10683709 -271509955 - MIR SINE MIR -11 251 50 251 216 0 0 chr1 10683962 10684013 -271509651 + MIR SINE MIR 104 154 -108 2156 145 0 0 chr1 10684399 10684710 -271508954 + AluSx SINE Alu 1 311 -1 2354 101 0 0 chr1 10684999 10685297 -271508367 - AluSx SINE Alu -14 298 1 1002 267 76 64 chr1 10685491 10686071 -271507593 - L1ME4a LINE L1 -1 6120 5534 196 184 0 0 chr1 10686759 10686797 -271506867 + MIR3 SINE MIR 160 197 -11 293 256 141 105 chr1 10687880 10688157 -271505507 + L2 LINE L2 2841 3127 -145 2577 80 0 0 chr1 10688225 10688536 -271505128 - AluSx SINE Alu -1 311 1 725 273 17 0 chr1 10688556 10688732 -271504932 + MIR SINE MIR 36 214 -48 2394 78 3 0 chr1 10689230 10689524 -271504140 + AluSq SINE Alu 1 295 -18 276 229 41 107 chr1 10689627 10689749 -271503915 - MIR SINE MIR -75 133 20 611 232 7 0 chr1 10690015 10690303 -271503361 + (TCCA)n Simple_repeat Simple_repeat 1 290 0 810 174 0 0 chr1 10690341 10690513 -271503151 + (TCCA)n Simple_repeat Simple_repeat 2 173 0 283 240 10 83 chr1 10690513 10690609 -271503055 - L2 LINE L2 0 3272 3184 389 315 0 15 chr1 10690700 10690830 -271502834 + MIR3 SINE MIR 31 158 -50 693 283 50 5 chr1 10691721 10691940 -271501724 + MIR SINE MIR 33 261 -1 193 333 39 0 chr1 10691958 10692036 -271501628 + MIR3 SINE MIR 106 186 -22 591 251 166 5 chr1 10693778 10693965 -271499699 + MIR SINE MIR 27 243 -19 205 348 27 27 chr1 10694244 10694356 -271499308 + L2 LINE L2 3134 3245 -27 1522 89 0 11 chr1 10694664 10694855 -271498809 + AluSx SINE Alu 1 189 -123 507 253 195 0 chr1 10694952 10695126 -271498538 + MIR SINE MIR 48 255 -7 194 81 27 0 chr1 10695126 10695163 -271498501 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 2249 97 0 7 chr1 10695163 10695452 -271498212 - AluSq SINE Alu -26 287 1 260 305 34 38 chr1 10695667 10695825 -271497839 - MIR3 SINE MIR -62 146 3 369 313 8 16 chr1 10696364 10696492 -271497172 - MIR SINE MIR -45 217 91 220 345 0 46 chr1 10696483 10696570 -271497094 + L2 LINE L2 3189 3271 -1 * 441 346 33 33 chr1 10696613 10696856 -271496808 - MIR SINE MIR -15 247 5 195 264 58 46 chr1 10697613 10697700 -271495964 - MIR3 SINE MIR -113 95 8 * 761 259 78 9 chr1 10697640 10697872 -271495792 + MIR SINE MIR 11 258 -4 444 255 19 0 chr1 10697953 10698059 -271495605 - MER81 DNA DNA -1 113 6 222 313 108 0 chr1 10698648 10698731 -271494933 - MIR SINE MIR -60 202 111 280 294 194 50 chr1 10699260 10699420 -271494244 - MIR SINE MIR -44 218 36 478 289 69 39 chr1 10699454 10699658 -271494006 + MIR SINE MIR 18 227 -35 209 154 123 92 chr1 10700758 10700823 -271492841 - L2 LINE L2 0 3313 3247 201 319 44 35 chr1 10700926 10701039 -271492625 + L2 LINE L2 3141 3254 -18 2217 106 0 0 chr1 10701070 10701525 -271492139 - AluSx SINE Alu 0 455 1 678 279 90 21 chr1 10702272 10702505 -271491159 + MIR SINE MIR 2 250 -12 215 228 0 35 chr1 10702856 10702913 -271490751 + G-rich Low_complexity Low_complexity 2 56 0 376 220 189 30 chr1 10703523 10703655 -271490009 - MIR3 SINE MIR -53 155 3 1172 374 7 56 chr1 10704067 10704372 -271489292 - AluSx SINE Alu -12 290 1 211 323 85 49 chr1 10704444 10704608 -271489056 - MIR SINE MIR -79 183 14 * 322 358 25 31 chr1 10704593 10704755 -271488909 + L2 LINE L2 2894 3054 -218 597 228 8 8 chr1 10704773 10704900 -271488764 - L2 LINE L2 0 3313 3187 2597 61 7 0 chr1 10705035 10705345 -271488319 - AluSx SINE Alu 0 312 1 670 228 37 7 chr1 10705345 10705555 -271488109 + MER110A LTR ERV1 272 491 0 * 2279 181 12 2 chr1 10705555 10705968 -271487696 + MER63 DNA MER1_type 433 849 -212 699 195 0 9 chr1 10705970 10706083 -271487581 + FLAM_C SINE Alu 6 117 -26 279 0 0 0 chr1 10706086 10706117 -271487547 + (TAA)n Simple_repeat Simple_repeat 2 32 0 927 177 17 43 chr1 10706123 10706192 -271487472 + MER63 DNA MER1_type 835 904 -156 1980 166 7 0 chr1 10706192 10706500 -271487164 - AluJb SINE Alu -2 310 1 927 177 17 43 chr1 10706500 10706543 -271487121 + MER63 DNA MER1_type 904 947 -113 2542 43 0 20 chr1 10706543 10706842 -271486822 - AluY SINE Alu -18 293 1 927 177 17 43 chr1 10706842 10706960 -271486704 + MER63 DNA MER1_type 947 1060 0 463 264 88 7 chr1 10706960 10707108 -271486556 + L1ME1 LINE L1 5999 6158 -8 619 281 0 18 chr1 10707375 10707546 -271486118 - LTR67 LTR ERVL -386 171 4 200 296 56 0 chr1 10707833 10707887 -271485777 - L2 LINE L2 -214 3058 3002 2142 130 0 0 chr1 10707896 10708189 -271485475 + AluSx SINE Alu 1 293 -19 2402 81 3 16 chr1 10708200 10708509 -271485155 + AluSq SINE Alu 1 305 -8 2117 104 10 0 chr1 10708509 10708798 -271484866 + AluY SINE Alu 1 292 -19 354 290 25 6 chr1 10709095 10709257 -271484407 + (CA)n Simple_repeat Simple_repeat 2 166 0 427 302 13 0 chr1 10709297 10709446 -271484218 + (CA)n Simple_repeat Simple_repeat 2 152 0 421 321 12 2 chr1 10709500 10710011 -271483653 + (CA)n Simple_repeat Simple_repeat 1 516 0 260 256 22 0 chr1 10710039 10710227 -271483437 + (CA)n Simple_repeat Simple_repeat 1 192 0 275 272 123 21 chr1 10712039 10712467 -271481197 + L1ME LINE L1 5189 5671 -450 311 280 75 9 chr1 10712487 10712594 -271481070 + L1M4 LINE L1 3016 3129 -3017 * 554 346 97 29 chr1 10712591 10713135 -271480529 - L1 LINE L1 -3261 2885 2305 241 161 71 0 chr1 10713136 10713192 -271480472 - FAM SINE Alu 0 179 120 1081 180 10 15 chr1 10713192 10713398 -271480266 - AluJo SINE Alu -107 205 1 586 228 183 13 chr1 10713709 10713966 -271479698 - L1ME3 LINE L1 -1 6163 5876 1600 56 9 56 chr1 10714073 10714289 -271479375 - AluY SINE Alu -50 261 56 486 309 66 37 chr1 10714299 10714649 -271479015 + L1ME LINE L1 75 434 -5636 1228 297 80 54 chr1 10714885 10715886 -271477778 + L1ME LINE L1 570 1609 -4652 4066 116 7 0 chr1 10715886 10716436 -271477228 - MER41A LTR ERV1 0 554 1 1228 297 80 54 chr1 10716436 10716667 -271476997 + L1ME LINE L1 1609 1833 -4428 2108 140 0 0 chr1 10716673 10716965 -271476699 - AluSx SINE Alu -16 296 5 285 231 102 0 chr1 10717066 10717174 -271476490 + L1ME LINE L1 1842 1960 -4301 23 0 0 0 chr1 10717243 10717266 -271476398 + AT_rich Low_complexity Low_complexity 1 23 0 445 239 341 0 chr1 10717283 10717459 -271476205 - MIR SINE MIR -24 238 3 374 147 28 6 chr1 10717543 10717656 -271476008 - MLT2F LTR ERVL 0 663 479 2359 107 0 0 chr1 10717740 10718048 -271475616 - AluSg1 SINE Alu -1 308 1 580 330 122 42 chr1 10718055 10718597 -271475067 - L1M4 LINE L1 -1467 4679 4095 333 315 0 0 chr1 10718733 10718825 -271474839 - L2 LINE L2 0 3313 3222 186 71 0 0 chr1 10719167 10719195 -271474469 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 2024 119 0 11 chr1 10719195 10719481 -271474183 - AluSx SINE Alu -29 283 1 1865 180 0 19 chr1 10719649 10719966 -271473698 - AluJb SINE Alu -1 311 1 1492 252 225 21 chr1 10719966 10720839 -271472825 - L2 LINE L2 -9 3304 2239 1045 195 20 76 chr1 10720839 10721142 -271472522 + L1MC4 LINE L1 7756 8041 -1 546 216 37 6 chr1 10721138 10721300 -271472364 + L1ME3A LINE L1 1615 1781 -4615 * 252 151 132 0 chr1 10721519 10721572 -271472092 - Charlie1 DNA MER1_type -4 2757 2698 587 251 120 0 chr1 10721572 10721747 -271471917 + L1MC4a LINE L1 7089 7284 -524 923 253 101 29 chr1 10721760 10722082 -271471582 + L1ME3A LINE L1 2134 2431 -3784 1866 124 87 0 chr1 10722082 10722357 -271471307 + AluSx SINE Alu 1 299 -13 923 253 101 29 chr1 10722357 10722639 -271471025 + L1ME3A LINE L1 2431 2737 -3478 944 245 162 10 chr1 10722647 10722961 -271470703 + L1ME3A LINE L1 5444 5805 -434 317 247 71 0 chr1 10722981 10723066 -271470598 + L1ME3A LINE L1 5866 5956 -283 481 167 0 0 chr1 10723653 10723725 -271469939 + tRNA-Glu-GAG tRNA tRNA 1 72 -3 2804 233 46 4 chr1 10723747 10724507 -271469157 + L1ME LINE L1 3736 4527 -1553 2577 64 0 6 chr1 10724507 10724820 -271468844 - AluSq SINE Alu -2 311 1 288 304 34 38 chr1 10725035 10725193 -271468471 - MIR3 SINE MIR -62 146 3 384 305 8 16 chr1 10725732 10725860 -271467804 - MIR SINE MIR -45 217 91 220 345 0 46 chr1 10725851 10725938 -271467726 + L2 LINE L2 3189 3271 -1 * 441 346 33 33 chr1 10725981 10726224 -271467440 - MIR SINE MIR -15 247 5 741 261 87 9 chr1 10727008 10727238 -271466426 + MIR SINE MIR 11 258 -4 430 264 19 0 chr1 10727319 10727425 -271466239 - MER81 DNA DNA -1 113 6 222 313 108 0 chr1 10728014 10728097 -271465567 - MIR SINE MIR -60 202 111 1521 192 32 6 chr1 10728860 10729173 -271464491 + L1MB5 LINE L1 5848 6168 -6 2587 167 61 6 chr1 10729177 10729716 -271463948 + L1MB8 LINE L1 5550 6118 -60 237 329 128 76 chr1 10729725 10730270 -271463394 - L2 LINE L2 -12 3260 2688 1994 125 21 3 chr1 10730270 10730605 -271463059 + L1MA5 LINE L1 5960 6300 0 200 83 0 28 chr1 10730702 10730738 -271462926 + (GGGGA)n Simple_repeat Simple_repeat 4 38 0 212 368 85 0 chr1 10730804 10730910 -271462754 - L2 LINE L2 -665 2649 2535 216 0 0 0 chr1 10731438 10731462 -271462202 + (CA)n Simple_repeat Simple_repeat 1 24 0 994 247 18 5 chr1 10731489 10731708 -271461956 + MIR SINE MIR 2 223 -39 203 292 35 111 chr1 10731966 10732137 -271461527 - MIR SINE MIR -34 228 71 2192 113 0 0 chr1 10733432 10733750 -271459914 - AluSx SINE Alu 0 318 1 209 148 0 19 chr1 10733892 10733946 -271459718 + (CTTG)n Simple_repeat Simple_repeat 2 54 0 886 123 11 22 chr1 10733966 10734145 -271459519 + (TTCC)n Simple_repeat Simple_repeat 3 179 0 348 204 9 19 chr1 10734153 10734261 -271459403 + CT-rich Low_complexity Low_complexity 3 109 0 218 259 190 43 chr1 10734826 10734994 -271458670 - MIR3 SINE MIR -54 154 3 499 227 91 8 chr1 10735494 10735626 -271458038 - MIR SINE MIR -37 225 83 466 262 28 0 chr1 10736041 10736195 -271457469 - MIR SINE MIR -65 143 28 192 214 0 0 chr1 10736567 10736623 -271457041 + (CA)n Simple_repeat Simple_repeat 2 57 0 382 240 0 0 chr1 10738652 10738727 -271454937 - MIR SINE MIR -121 141 67 820 228 81 9 chr1 10738879 10739090 -271454574 + MIR SINE MIR 26 251 -11 496 348 163 12 chr1 10739956 10740471 -271453193 - L2 LINE L2 -646 2668 2076 661 209 7 22 chr1 10740473 10740612 -271453052 - FRAM SINE Alu -12 164 28 13778 96 31 4 chr1 10740712 10742865 -271450799 - L1P LINE L1 -1588 4558 2348 998 277 100 22 chr1 10943310 10943741 -271249923 + MLT1K LTR MaLR 7 497 -91 297 246 169 39 chr1 10944833 10944963 -271248701 - L2 LINE L2 -3 3269 3123 199 182 0 45 chr1 10944982 10945026 -271248638 + L2 LINE L2 3267 3308 -5 644 143 76 17 chr1 10945458 10945577 -271248087 + FLAM_C SINE Alu 5 130 -3 5468 136 30 15 chr1 10945970 10946356 -271247308 + L1MC1 LINE L1 5421 5799 -534 2286 106 3 0 chr1 10946356 10946667 -271246997 + AluSx SINE Alu 1 312 0 5468 136 30 15 chr1 10946667 10947168 -271246496 + L1MC1 LINE L1 5799 6322 -11 2050 135 7 0 chr1 10947203 10947499 -271246165 + AluSx SINE Alu 1 298 -14 1079 239 139 16 chr1 10947539 10947978 -271245686 + L1ME3 LINE L1 5668 6160 -2 213 39 0 0 chr1 10947984 10948010 -271245654 + (CA)n Simple_repeat Simple_repeat 1 26 0 1592 116 0 21 chr1 10948739 10948972 -271244692 + AluSx SINE Alu 18 245 -67 200 35 35 0 chr1 10949487 10949516 -271244148 + (CA)n Simple_repeat Simple_repeat 2 31 0 277 226 60 24 chr1 10949980 10950064 -271243600 + MLT1K LTR MaLR 473 559 -29 263 220 0 0 chr1 10950067 10950117 -271243547 + MER117 DNA MER1_type 44 93 -104 686 299 0 6 chr1 10950272 10950449 -271243215 + MIR SINE MIR 2 177 -85 370 336 50 52 chr1 10951688 10952069 -271241595 + L2 LINE L2 2855 3234 -38 1502 159 91 34 chr1 10952069 10952389 -271241275 + MER44D DNA MER2_type 1 608 -1 1839 149 0 10 chr1 10952439 10952740 -271240924 - AluJo SINE Alu -14 298 1 1017 249 70 50 chr1 10953558 10953862 -271239802 - MLT1J LTR MaLR 0 615 204 2184 98 0 0 chr1 10953862 10954184 -271239480 + AluSx SINE Alu 1 322 0 1017 249 70 50 chr1 10954184 10954257 -271239407 - MLT1J LTR MaLR -411 204 134 421 294 169 25 chr1 10954488 10954648 -271239016 + MIR SINE MIR 39 221 -41 256 298 96 62 chr1 10954806 10955014 -271238650 + MLT1H LTR MaLR 112 326 -223 359 283 54 50 chr1 10955557 10955878 -271237786 - L2 LINE L2 -222 3050 2726 334 205 39 13 chr1 10956240 10956318 -271237346 + MIR SINE MIR 35 114 -148 1984 130 0 3 chr1 10956357 10956672 -271236992 + AluSx SINE Alu 1 314 0 840 220 13 0 chr1 10956680 10956856 -271236808 + FRAM SINE Alu 1 178 0 893 281 33 0 chr1 10956859 10957101 -271236563 - MIR SINE MIR -8 254 5 660 281 71 5 chr1 10957315 10957525 -271236139 - MIR SINE MIR -35 227 4 385 278 196 0 chr1 10957930 10958063 -271235601 + MIR SINE MIR 103 261 -1 418 141 11 22 chr1 10958143 10958235 -271235429 + GA-rich Low_complexity Low_complexity 3 93 0 228 189 113 19 chr1 10958492 10958545 -271235119 + MIR3 SINE MIR 106 163 -45 337 231 121 5 chr1 10958925 10959064 -271234600 + MIR SINE MIR 4 153 -60 503 216 144 24 chr1 10959071 10959238 -271234426 + MIR SINE MIR 21 207 -55 310 160 0 0 chr1 10959820 10959870 -271233794 + AluJb SINE Alu 3 52 -250 180 0 0 0 chr1 10959895 10959915 -271233749 + (TAA)n Simple_repeat Simple_repeat 3 22 0 1388 154 57 4 chr1 10959956 10960202 -271233462 + AluJb SINE Alu 37 295 -17 335 352 63 0 chr1 10960657 10960816 -271232848 - MIR3 SINE MIR -11 197 29 317 300 79 32 chr1 10960899 10961089 -271232575 - MIR SINE MIR -12 250 52 396 263 30 0 chr1 10961510 10961624 -271232040 - MIR SINE MIR -61 147 37 731 251 5 35 chr1 10961991 10962194 -271231470 - MIR SINE MIR -8 254 58 223 316 128 8 chr1 10962355 10962488 -271231176 + L3b LINE CR1 1310 1458 -125 21 36 0 0 chr1 10964737 10964765 -271228899 + GC_rich Low_complexity Low_complexity 1 28 0 250 270 18 55 chr1 10966179 10966342 -271227322 + (CA)n Simple_repeat Simple_repeat 1 157 0 333 0 0 0 chr1 10966552 10966589 -271227075 + (CA)n Simple_repeat Simple_repeat 1 37 0 234 0 0 0 chr1 10966913 10966939 -271226725 + (TC)n Simple_repeat Simple_repeat 1 26 0 204 125 0 0 chr1 10966939 10966971 -271226693 + (CA)n Simple_repeat Simple_repeat 2 33 0 644 296 27 11 chr1 10967410 10967596 -271226068 + MIR3 SINE MIR 5 193 -15 180 250 42 0 chr1 10967756 10967804 -271225860 - MIR SINE MIR -142 120 71 234 91 0 0 chr1 10967885 10967918 -271225746 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 630 303 51 0 chr1 10969200 10969395 -271224269 - MIR SINE MIR 0 262 58 340 229 21 31 chr1 10969731 10969827 -271223837 - MIR SINE MIR -68 140 46 556 268 77 0 chr1 10970015 10970183 -271223481 - MIR SINE MIR -34 228 48 574 72 0 36 chr1 10970849 10970932 -271222732 - MADE1 DNA Mariner 0 80 1 589 311 6 0 chr1 10971562 10971729 -271221935 - MIR SINE MIR 0 262 95 1682 171 14 3 chr1 10972561 10972854 -271220810 - AluJo SINE Alu -16 296 1 201 180 0 60 chr1 10972902 10972952 -271220712 + (TGAA)n Simple_repeat Simple_repeat 3 49 0 279 0 0 0 chr1 10974513 10974544 -271219120 + (TG)n Simple_repeat Simple_repeat 2 32 0 214 264 19 0 chr1 10974695 10974748 -271218916 + MIR SINE MIR 97 150 -112 388 273 72 7 chr1 10975496 10975635 -271218029 - MIR3 SINE MIR -15 193 46 2269 102 0 3 chr1 10976130 10976444 -271217220 - AluSq SINE Alu 0 313 1 193 310 35 11 chr1 10976688 10976775 -271216889 + MIR SINE MIR 162 250 -12 339 278 94 67 chr1 10977123 10977198 -271216466 + MER5A DNA MER1_type 1 72 -117 1391 178 31 52 chr1 10977198 10977514 -271216150 + AluJb SINE Alu 1 310 0 339 278 94 67 chr1 10977514 10977617 -271216047 + MER5A DNA MER1_type 72 185 -4 2783 3 0 0 chr1 10977716 10978023 -271215641 + AluYa5 SINE Alu 1 307 -4 2361 184 28 61 chr1 10978893 10979318 -271214346 - MLT2B1 LTR ERVL 0 520 115 2156 109 3 0 chr1 10979318 10979612 -271214052 + AluSx SINE Alu 1 295 -17 2361 184 28 61 chr1 10979612 10979724 -271213940 - MLT2B1 LTR ERVL -405 115 1 520 276 105 44 chr1 10979944 10980172 -271213492 + MIR SINE MIR 20 261 -1 2246 98 10 3 chr1 10980988 10981294 -271212370 + AluSx SINE Alu 3 310 -2 394 233 47 62 chr1 10981418 10981547 -271212117 + MIR3 SINE MIR 58 184 -24 283 321 96 24 chr1 10981595 10981804 -271211860 - L3b LINE CR1 -131 1452 1229 390 149 74 50 chr1 10981838 10981959 -271211705 - L1ME4a LINE L1 -1 6120 5997 198 71 0 0 chr1 10982241 10982269 -271211395 + (CAGAGA)n Simple_repeat Simple_repeat 3 30 0 224 270 113 25 chr1 10982685 10982844 -271210820 - MIR3 SINE MIR -7 201 29 33 0 0 0 chr1 10983063 10983096 -271210568 + AT_rich Low_complexity Low_complexity 1 33 0 2134 107 21 34 chr1 10983096 10983269 -271210395 - L1PB1 LINE L1 -8 6143 5974 2259 68 0 10 chr1 10983269 10983563 -271210101 - AluY SINE Alu -20 291 1 2134 107 21 34 chr1 10983563 10983716 -271209948 - L1PB1 LINE L1 -177 5974 5821 512 270 41 63 chr1 10983874 10983913 -271209751 - L1MC4 LINE L1 -80 7962 7924 1970 142 0 7 chr1 10983913 10984222 -271209442 - AluJo SINE Alu 0 312 6 512 270 41 63 chr1 10984222 10984501 -271209163 - L1MC4 LINE L1 -118 7924 7651 632 285 51 33 chr1 10984599 10984813 -271208851 + MIR SINE MIR 20 237 -25 1210 73 11 11 chr1 10984987 10985166 -271208498 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 2071 107 0 0 chr1 10985169 10985449 -271208215 - AluSx SINE Alu -32 280 1 405 278 17 9 chr1 10985464 10985579 -271208085 + MIR SINE MIR 19 134 -74 322 371 46 57 chr1 10985583 10985863 -271207801 - L1MEd LINE L1 -4206 2104 1828 2366 74 3 10 chr1 10985899 10986210 -271207454 - AluSp SINE Alu -4 309 1 1950 133 13 10 chr1 10986285 10986586 -271207078 - AluJo SINE Alu -8 304 3 1660 272 80 47 chr1 10986623 10987183 -271206481 - L1MEd LINE L1 -4654 1656 1116 1840 131 3 54 chr1 10987183 10987497 -271206167 - AluSx SINE Alu -13 299 2 1660 272 80 47 chr1 10987497 10988163 -271205501 - L1MEd LINE L1 -5194 1116 294 2297 111 39 28 chr1 10988163 10988523 -271205141 + THE1B LTR MaLR 1 364 0 1660 272 80 47 chr1 10988523 10988782 -271204882 - L1MEd LINE L1 -6016 294 45 325 263 53 44 chr1 10988829 10988943 -271204721 - L2 LINE L2 0 3272 3158 5630 108 50 22 chr1 10988999 10989911 -271203753 + Tigger1 DNA MER2_type 2 939 -1479 9346 93 26 30 chr1 10990584 10990801 -271202863 + Tigger1 DNA MER2_type 952 1168 -1250 2080 129 3 0 chr1 10990801 10991103 -271202561 + AluSp SINE Alu 1 303 -10 9346 93 26 30 chr1 10991103 10992358 -271201306 + Tigger1 DNA MER2_type 1168 2418 0 765 262 56 9 chr1 10992381 10992614 -271201050 - MIR SINE MIR -12 250 7 189 107 0 0 chr1 10993190 10993218 -271200446 + (CA)n Simple_repeat Simple_repeat 1 28 0 187 279 117 27 chr1 10993222 10993333 -271200331 + L2 LINE L2 3148 3268 -4 23 0 0 0 chr1 10993344 10993367 -271200297 + AT_rich Low_complexity Low_complexity 1 23 0 1683 221 24 3 chr1 10993367 10993707 -271199957 - MER7A DNA MER2_type -1 345 1 396 0 0 0 chr1 10993915 10993959 -271199705 + (CA)n Simple_repeat Simple_repeat 2 45 0 533 151 36 24 chr1 10994256 10994422 -271199242 + CT-rich Low_complexity Low_complexity 2 169 0 2095 118 10 0 chr1 10994962 10995251 -271198413 + AluSx SINE Alu 1 292 -20 994 200 22 0 chr1 10995884 10996069 -271197595 - MER3 DNA MER1_type -5 204 16 2085 198 101 17 chr1 10996150 10996615 -271197049 - MLT1D LTR MaLR -1 504 1 255 207 17 0 chr1 10996633 10996691 -271196973 - MIR SINE MIR -67 141 83 535 301 52 41 chr1 10996694 10997029 -271196635 + LTR16A LTR ERVL 1 351 -106 778 305 108 24 chr1 10997089 10997596 -271196068 + L2 LINE L2 2729 3269 -3 2240 106 0 6 chr1 10998186 10998498 -271195166 + AluSx SINE Alu 1 310 -2 714 304 21 17 chr1 10998800 10999040 -271194624 - MIR SINE MIR -4 258 18 3889 269 71 24 chr1 10999199 10999726 -271193938 + L2 LINE L2 1548 2049 -1264 7222 54 15 0 chr1 10999726 11001022 -271192642 - L1PA6 LINE L1 0 6154 4846 3889 269 71 24 chr1 11001022 11001433 -271192231 + L2 LINE L2 2049 2439 -874 2280 98 0 0 chr1 11001433 11001739 -271191925 - AluSx SINE Alu -6 306 1 3889 269 71 24 chr1 11001739 11002263 -271191401 + L2 LINE L2 2439 3095 -218 2202 112 0 0 chr1 11002263 11002558 -271191106 + AluSx SINE Alu 1 295 -17 3889 269 71 24 chr1 11002558 11002788 -271190876 + L2 LINE L2 3095 3313 0 346 100 100 43 chr1 11003327 11003397 -271190267 + MER81 DNA DNA 1 74 -40 5136 149 14 33 chr1 11003661 11003969 -271189695 + MER49 LTR ERV1 1 313 -610 2241 112 0 0 chr1 11003969 11004282 -271189382 + AluSq SINE Alu 1 313 0 5136 149 14 33 chr1 11004282 11004767 -271188897 + MER49 LTR ERV1 313 777 -146 2360 167 43 14 chr1 11004767 11005181 -271188483 + MSTB LTR MaLR 1 426 0 5136 149 14 33 chr1 11005181 11005305 -271188359 + MER49 LTR ERV1 777 902 -21 2046 134 0 31 chr1 11005379 11005699 -271187965 + AluSx SINE Alu 1 310 -2 2368 118 30 33 chr1 11006280 11006645 -271187019 - THE1B LTR MaLR 0 364 1 2301 141 66 24 chr1 11006801 11007212 -271186452 + MSTA LTR MaLR 1 428 0 356 197 0 40 chr1 11007262 11007338 -271186326 - MIR SINE MIR -113 149 77 471 18 0 0 chr1 11007606 11007662 -271186002 + (TG)n Simple_repeat Simple_repeat 2 57 0 22 0 0 0 chr1 11007726 11007748 -271185916 + AT_rich Low_complexity Low_complexity 1 22 0 219 306 14 0 chr1 11007897 11007969 -271185695 - L2 LINE L2 -14 3258 3186 346 253 29 0 chr1 11008269 11008391 -271185273 - MIR SINE MIR -71 137 7 242 318 10 99 chr1 11008385 11008577 -271185087 - MIR SINE MIR -1 261 87 * 1622 130 93 11 chr1 11008781 11009050 -271184614 + AluSx SINE Alu 1 291 -21 246 105 0 0 chr1 11009147 11009185 -271184479 + (TG)n Simple_repeat Simple_repeat 2 39 0 183 263 18 0 chr1 11010114 11010171 -271183493 + MIR SINE MIR 47 104 -158 2000 107 20 20 chr1 11010252 11010552 -271183112 - AluSx SINE Alu -12 300 1 405 311 130 6 chr1 11010559 11010720 -271182944 + MIR SINE MIR 51 231 -31 198 311 39 29 chr1 11011074 11011177 -271182487 + L2 LINE L2 2693 2796 -518 413 207 11 11 chr1 11011184 11011271 -271182393 - MLT1B LTR MaLR -38 352 266 2292 100 3 0 chr1 11011484 11011794 -271181870 - AluSx SINE Alu -1 311 1 236 139 23 0 chr1 11011794 11011837 -271181827 + LTR43 LTR ERV1 191 234 -368 2214 111 3 9 chr1 11011840 11012155 -271181509 - AluSq SINE Alu 0 313 1 894 252 34 51 chr1 11012155 11012202 -271181462 + LTR43 LTR ERV1 191 237 -365 2045 108 0 11 chr1 11012202 11012568 -271181096 - AluSx SINE Alu 0 363 1 894 252 34 51 chr1 11012568 11012813 -271180851 + LTR43 LTR ERV1 237 479 -123 1738 148 41 0 chr1 11012845 11013136 -271180528 - AluJb SINE Alu -1 311 9 968 266 103 18 chr1 11013165 11013552 -271180112 - MLT1D LTR MaLR -85 420 1 739 274 179 43 chr1 11013575 11013845 -271179819 + L2 LINE L2 2837 3069 -244 1747 159 0 35 chr1 11013845 11014159 -271179505 - AluJb SINE Alu -9 303 1 739 274 179 43 chr1 11014159 11014308 -271179356 + L2 LINE L2 3069 3313 0 234 304 76 0 chr1 11014310 11014402 -271179262 - L2 LINE L2 -37 3276 3178 287 243 146 29 chr1 11014566 11014669 -271178995 + L2 LINE L2 3158 3272 0 2107 116 3 3 chr1 11016255 11016558 -271177106 - AluSx SINE Alu -9 303 1 616 310 104 51 chr1 11017679 11017948 -271175716 + L2 LINE L2 2693 2947 -366 1892 146 0 10 chr1 11017948 11018243 -271175421 + AluSx SINE Alu 1 292 -20 616 310 104 51 chr1 11018243 11018552 -271175112 + L2 LINE L2 2947 3313 0 618 324 6 0 chr1 11018620 11018796 -271174868 + MER117 DNA MER1_type 15 191 -6 397 228 88 26 chr1 11019198 11019312 -271174352 - MIR SINE MIR -71 137 17 430 29 88 0 chr1 11020588 11020656 -271173008 + (CCCTAA)n Simple_repeat Simple_repeat 5 78 0 378 312 98 10 chr1 11020916 11021121 -271172543 - MIR SINE MIR -6 256 34 508 311 25 36 chr1 11021230 11021426 -271172238 + MIR SINE MIR 15 208 -54 465 196 254 0 chr1 11021708 11021902 -271171762 - L2 LINE L2 -317 2996 2758 192 276 52 0 chr1 11021920 11021978 -271171686 + MIR SINE MIR 202 262 0 512 196 17 22 chr1 11022226 11022405 -271171259 + GA-rich Low_complexity Low_complexity 3 180 0 308 280 12 36 chr1 11023606 11023774 -271169890 + (CCCA)n Simple_repeat Simple_repeat 3 166 0 337 349 8 0 chr1 11023820 11023952 -271169712 + MIR SINE MIR 20 152 -56 345 205 42 34 chr1 11025914 11026141 -271167523 + Harlequin LTR ERV1 886 1108 -5788 530 80 0 93 chr1 11026148 11026310 -271167354 + (CAGAGA)n Simple_repeat Simple_repeat 5 151 0 437 295 69 21 chr1 11026813 11027009 -271166655 - MIR SINE MIR -40 222 16 553 256 74 47 chr1 11027652 11027842 -271165822 - Charlie8 DNA MER1_type -65 265 65 2054 116 0 14 chr1 11027842 11028167 -271165497 - AluSq SINE Alu 0 313 1 553 256 74 47 chr1 11028167 11028234 -271165430 - Charlie8 DNA MER1_type -265 65 1 399 325 113 4 chr1 11029234 11029465 -271164199 + MIR SINE MIR 5 260 -2 1569 189 21 0 chr1 11030464 11030749 -271162915 + L1MB3 LINE L1 5893 6183 0 214 303 15 0 chr1 11031546 11031612 -271162052 - MIR SINE MIR -61 147 81 189 0 0 0 chr1 11031756 11031777 -271161887 + (CTGGGG)n Simple_repeat Simple_repeat 1 21 0 2222 103 6 0 chr1 11031819 11032130 -271161534 + AluSq SINE Alu 1 313 0 351 270 173 27 chr1 11032203 11032388 -271161276 + MIR SINE MIR 14 225 -37 366 226 73 17 chr1 11033542 11033666 -271159998 - MIR SINE MIR -62 146 27 247 261 78 0 chr1 11033840 11033941 -271159723 + MIR SINE MIR 31 147 -62 501 299 36 36 chr1 11035036 11035230 -271158434 - MIR3 SINE MIR -1 207 14 1695 215 60 54 chr1 11035290 11035774 -271157890 - MLT1D LTR MaLR -10 495 9 428 274 115 13 chr1 11035818 11035975 -271157689 - MIR SINE MIR -70 192 20 450 317 82 0 chr1 11037263 11037446 -271156218 - MIR SINE MIR -6 256 59 201 281 62 41 chr1 11037441 11037587 -271156077 - L2 LINE L2 -273 2999 2851 * 260 326 41 0 chr1 11037668 11037766 -271155898 - MIR3 SINE MIR -46 162 61 241 220 17 0 chr1 11037961 11038020 -271155644 + MIR SINE MIR 85 144 -64 476 271 73 0 chr1 11038263 11038414 -271155250 + MIR SINE MIR 98 259 -3 1287 180 113 158 chr1 11038416 11038509 -271155155 + MLT1C LTR MaLR 3 99 -368 1853 104 4 12 chr1 11038509 11038768 -271154896 + AluSx SINE Alu 1 257 -55 1287 180 113 158 chr1 11038768 11039080 -271154584 + MLT1C LTR MaLR 99 467 0 1516 241 67 14 chr1 11039940 11040375 -271153289 - MLT1C LTR MaLR -5 462 5 2202 103 3 0 chr1 11040584 11040885 -271152779 + AluSx SINE Alu 1 302 -10 792 251 10 34 chr1 11041122 11041329 -271152335 - MIR SINE MIR -17 245 44 267 304 96 0 chr1 11041594 11041719 -271151945 + MIR3 SINE MIR 1 137 -71 227 304 196 9 chr1 11041793 11041905 -271151759 + MIR SINE MIR 21 153 -109 218 321 0 48 chr1 11042518 11042602 -271151062 + MIR SINE MIR 46 125 -83 193 267 67 17 chr1 11042751 11042811 -271150853 + L2 LINE L2 3227 3289 -24 1973 115 0 7 chr1 11043369 11043655 -271150009 - AluSx SINE Alu -12 300 17 264 337 131 31 chr1 11044000 11044291 -271149373 - L2 LINE L2 -5 3267 2948 272 237 10 62 chr1 11044293 11044390 -271149274 + MER117 DNA MER1_type 69 160 -37 406 144 198 18 chr1 11044414 11044525 -271149139 - MIR SINE MIR -59 149 19 871 215 10 41 chr1 11044532 11044639 -271149025 - MER5A DNA MER1_type 0 189 89 1624 168 21 14 chr1 11044639 11044930 -271148734 - AluJb SINE Alu -8 304 12 871 215 10 41 chr1 11044930 11045017 -271148647 - MER5A DNA MER1_type -100 89 1 219 232 37 61 chr1 11045045 11045127 -271148537 + MIR SINE MIR 117 196 -66 727 189 92 6 chr1 11045157 11045321 -271148343 + MER5B DNA MER1_type 1 178 0 194 247 173 12 chr1 11045323 11045347 -271148317 + MER5A DNA MER1_type 51 70 -119 2202 97 0 10 chr1 11045347 11045635 -271148029 + AluSp SINE Alu 1 279 -34 1108 98 0 22 chr1 11045635 11045819 -271147845 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2202 97 0 10 chr1 11045819 11045854 -271147810 + AluSp SINE Alu 279 313 0 194 247 173 12 chr1 11045854 11045910 -271147754 + MER5A DNA MER1_type 70 144 -45 * 261 218 18 0 chr1 11045857 11045912 -271147752 - MER5A DNA MER1_type -80 109 54 257 298 53 26 chr1 11046057 11046171 -271147493 - L2 LINE L2 -1 3312 3196 1143 255 158 41 chr1 11046297 11046830 -271146834 - MLT1G1 LTR MaLR 0 595 1 492 291 143 9 chr1 11046878 11047108 -271146556 - MIR SINE MIR 0 262 2 245 290 112 47 chr1 11047195 11047302 -271146362 - L2 LINE L2 -257 3056 2943 309 350 11 6 chr1 11047782 11047959 -271145705 + CT-rich Low_complexity Low_complexity 2 179 0 308 341 138 7 chr1 11048552 11048690 -271144974 - MIR SINE MIR -87 175 20 2515 174 80 54 chr1 11051390 11051925 -271141739 - MLT2B3 LTR ERVL 0 554 6 304 315 33 30 chr1 11051931 11052072 -271141592 + MIR SINE MIR 68 212 -32 895 246 14 27 chr1 11052280 11052500 -271141164 - MIR SINE MIR 0 262 46 2268 154 137 0 chr1 11052642 11053044 -271140620 + MSTB2 LTR MaLR 1 457 0 249 328 57 11 chr1 11053078 11053201 -271140463 + MIR SINE MIR 6 132 -76 389 291 0 0 chr1 11053232 11053318 -271140346 + MER5A DNA MER1_type 9 94 -95 217 278 105 53 chr1 11053368 11053501 -271140163 + L2 LINE L2 3174 3313 0 1068 293 94 44 chr1 11053741 11054837 -271138827 - L1MEc LINE L1 -4303 2093 943 381 190 13 0 chr1 11055087 11055166 -271138498 + MADE1 DNA Mariner 1 80 0 375 207 12 0 chr1 11055186 11055268 -271138396 + L1MB8 LINE L1 5861 5943 -235 707 286 113 3 chr1 11055278 11055596 -271138068 - L2 LINE L2 -642 2672 2320 2221 93 0 0 chr1 11056341 11056630 -271137034 - AluSx SINE Alu -23 289 1 488 285 64 76 chr1 11056632 11056962 -271136702 - L2 LINE L2 -13 3300 2975 540 197 49 8 chr1 11057696 11057818 -271135846 - L1MA10 LINE L1 -3 6331 6205 1601 173 17 3 chr1 11057820 11058115 -271135549 + AluJo SINE Alu 1 299 -13 3660 217 67 28 chr1 11058115 11058324 -271135340 - L1MEc LINE L1 -2763 3452 3253 1545 123 28 16 chr1 11058324 11058577 -271135087 - L1MA1 LINE L1 0 6302 6047 3660 217 67 28 chr1 11058577 11059509 -271134155 - L1MEc LINE L1 -2962 3253 2241 1957 95 7 4 chr1 11059509 11059805 -271133859 + AluY SINE Alu 11 307 0 3660 217 67 28 chr1 11059805 11060370 -271133294 - L1MEc LINE L1 -3974 2241 1700 1693 154 13 32 chr1 11060370 11060481 -271133183 + AluJo SINE Alu 1 113 -199 2638 95 3 14 chr1 11060481 11060840 -271132824 - THE1A LTR MaLR 0 355 1 12324 82 2 10 chr1 11060840 11062432 -271131232 - THE1A-int LTR MaLR 0 1580 1 2804 64 3 11 chr1 11062432 11062790 -271130874 - THE1A LTR MaLR 0 355 1 1693 154 13 32 chr1 11062790 11062987 -271130677 + AluJo SINE Alu 110 305 -7 767 247 87 31 chr1 11062987 11063368 -271130296 - L1MEc LINE L1 -4688 1708 1307 549 210 249 24 chr1 11063402 11063607 -271130057 - L1MEc LINE L1 -6143 253 3 27 0 0 0 chr1 11063629 11063656 -271130008 + AT_rich Low_complexity Low_complexity 1 27 0 802 216 18 0 chr1 11063794 11063961 -271129703 - MER5B DNA MER1_type 0 178 9 310 236 191 11 chr1 11064700 11064789 -271128875 - L2 LINE L2 0 3272 3168 411 264 23 16 chr1 11066120 11066249 -271127415 - MIR SINE MIR -70 192 63 274 196 69 4 chr1 11066494 11066583 -271127081 + MIR SINE MIR 33 137 -71 246 296 49 0 chr1 11066828 11066909 -271126755 - L2 LINE L2 0 3272 3188 728 273 32 14 chr1 11067469 11067689 -271125975 - MIR SINE MIR -32 230 7 331 296 43 62 chr1 11068081 11068243 -271125421 + MER91B DNA MER1_type 18 176 -14 403 289 28 85 chr1 11068312 11068523 -271125141 + MIR SINE MIR 37 235 -27 449 348 81 5 chr1 11069799 11070020 -271123644 + MIR SINE MIR 25 262 0 222 317 139 47 chr1 11070676 11071080 -271122584 - L2 LINE L2 -5 3267 2827 274 175 0 90 chr1 11071082 11071259 -271122405 + G-rich Low_complexity Low_complexity 2 162 0 238 145 16 65 chr1 11071271 11071333 -271122331 + G-rich Low_complexity Low_complexity 1 59 0 201 74 0 0 chr1 11071345 11071372 -271122292 + (GGAGA)n Simple_repeat Simple_repeat 1 27 0 273 325 212 0 chr1 11071516 11071799 -271121865 - L2 LINE L2 -526 2788 2446 429 0 0 264 chr1 11072213 11072452 -271121212 + (CAGC)n Simple_repeat Simple_repeat 4 179 0 * 438 133 0 87 chr1 11072343 11072639 -271121025 + (CAGCC)n Simple_repeat Simple_repeat 1 270 0 201 259 176 0 chr1 11072771 11072856 -271120808 + MIR SINE MIR 89 188 -74 217 222 60 54 chr1 11073101 11073268 -271120396 + (CAGAG)n Simple_repeat Simple_repeat 3 170 0 357 334 17 6 chr1 11074420 11074777 -271118887 + C-rich Low_complexity Low_complexity 1 361 0 697 235 75 5 chr1 11075275 11075475 -271118189 + MIR SINE MIR 13 226 -36 1284 124 4 68 chr1 11075592 11075826 -271117838 - AluJo SINE Alu -7 305 87 577 301 170 16 chr1 11075930 11076242 -271117422 + L2 LINE L2 2912 3271 -1 1977 121 31 14 chr1 11076744 11077034 -271116630 - AluSx SINE Alu -17 295 1 2184 99 13 0 chr1 11077070 11077374 -271116290 + AluY SINE Alu 1 308 -3 804 349 101 9 chr1 11077462 11077889 -271115775 + L2 LINE L2 2848 3313 0 189 266 93 93 chr1 11077904 11078043 -271115621 + L2 LINE L2 3119 3257 -56 399 275 158 0 chr1 11078229 11078400 -271115264 - L2 LINE L2 -1 3312 3115 305 311 66 0 chr1 11079062 11079184 -271114480 - MIR3 SINE MIR -49 159 30 452 259 28 42 chr1 11081568 11081711 -271111953 - MIR3 SINE MIR -49 159 19 237 287 126 0 chr1 11082101 11082188 -271111476 + MIR SINE MIR 44 141 -67 1628 166 48 48 chr1 11082442 11082494 -271111170 - L1MB3 LINE L1 0 6183 6132 183 42 0 0 chr1 11082494 11082518 -271111146 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1959 104 14 28 chr1 11082518 11082805 -271110859 - AluSx SINE Alu -29 283 1 1628 166 48 48 chr1 11082805 11083049 -271110615 - L1MB3 LINE L1 -50 6133 5883 2331 88 7 3 chr1 11083049 11083356 -271110308 - AluSx SINE Alu -4 308 1 1628 166 48 48 chr1 11083356 11083436 -271110228 - L1MB3 LINE L1 -299 5884 5805 222 118 0 0 chr1 11083529 11083563 -271110101 + (CACG)n Simple_repeat Simple_repeat 1 34 0 402 316 85 45 chr1 11083695 11083942 -271109722 - L2 LINE L2 -75 3197 2941 418 278 57 17 chr1 11084346 11084522 -271109142 - MIR SINE MIR -1 261 79 225 308 19 47 chr1 11085389 11085496 -271108168 + MIR3 SINE MIR 105 208 0 232 308 94 8 chr1 11086576 11086693 -271106971 - MIR SINE MIR -75 187 61 1260 248 72 19 chr1 11087719 11088147 -271105517 - MLT1C LTR MaLR -1 466 16 403 360 114 0 chr1 11088153 11088328 -271105336 - MIR SINE MIR -56 206 12 1408 175 67 4 chr1 11088886 11089154 -271104510 + AluSx SINE Alu 1 285 -27 198 0 0 0 chr1 11089167 11089189 -271104475 + (TAA)n Simple_repeat Simple_repeat 1 22 0 211 229 181 24 chr1 11089367 11089450 -271104214 - MIR SINE MIR -59 203 108 185 377 35 9 chr1 11090171 11090285 -271103379 - MIR SINE MIR -62 146 30 665 329 50 4 chr1 11090353 11090630 -271103034 + L1MC/D LINE L1 5441 5730 -2078 190 278 82 21 chr1 11090769 11090866 -271102798 - L2 LINE L2 -575 2739 2637 231 345 108 7 chr1 11091202 11091350 -271102314 + MIR SINE MIR 59 221 -41 234 342 118 58 chr1 11091906 11092269 -271101395 + L2 LINE L2 2811 3195 -77 188 254 211 0 chr1 11092832 11092903 -271100761 - MIR SINE MIR -90 118 33 423 284 37 15 chr1 11093058 11093192 -271100472 - MIR SINE MIR -70 192 56 195 220 40 0 chr1 11093335 11093385 -271100279 + MIR SINE MIR 70 121 -141 698 261 76 33 chr1 11093388 11093718 -271099946 - MLT1H LTR MaLR -1 548 205 2108 124 0 13 chr1 11093759 11094074 -271099590 + AluSx SINE Alu 1 311 -1 883 296 63 19 chr1 11094095 11094501 -271099163 + MLT1B LTR MaLR 34 390 0 772 245 58 77 chr1 11094501 11094817 -271098847 + MLT1C LTR MaLR 157 466 -1 630 262 84 5 chr1 11094817 11095008 -271098656 - MLT1H LTR MaLR -342 207 2 206 318 146 0 chr1 11095013 11095123 -271098541 + MIR SINE MIR 123 248 -14 214 274 151 0 chr1 11095155 11095228 -271098436 + L2 LINE L2 3168 3251 -21 889 231 0 0 chr1 11096789 11096962 -271096702 + AluJo SINE Alu 122 294 -18 525 144 22 44 chr1 11096970 11097151 -271096513 + (CAGAGA)n Simple_repeat Simple_repeat 2 178 0 2333 79 0 29 chr1 11097515 11097831 -271095833 - AluY SINE Alu -4 307 1 1904 143 20 3 chr1 11097833 11098126 -271095538 - AluJo SINE Alu -14 298 1 1754 220 93 29 chr1 11098553 11099062 -271094602 + L1ME3 LINE L1 5548 6100 -62 2502 50 0 0 chr1 11099062 11099361 -271094303 - AluY SINE Alu -12 299 1 1754 220 93 29 chr1 11099361 11099429 -271094235 + L1ME3 LINE L1 6100 6162 0 2070 102 11 0 chr1 11099429 11099714 -271093950 - AluSx SINE Alu -24 288 1 1127 288 81 34 chr1 11100778 11101174 -271092490 - L2 LINE L2 0 3313 2839 1779 175 0 7 chr1 11101174 11101471 -271092193 + AluJo SINE Alu 1 295 -17 1127 288 81 34 chr1 11101471 11101620 -271092044 - L2 LINE L2 -474 2839 2699 1541 208 40 103 chr1 11101652 11102177 -271091487 + MLT2B1 LTR ERVL 27 518 -2 313 216 80 0 chr1 11102180 11102268 -271091396 - L2 LINE L2 -629 2685 2591 2992 164 25 4 chr1 11102817 11103293 -271090371 - MER66B LTR ERV1 0 486 1 340 397 43 5 chr1 11103353 11103537 -271090127 + MIR3 SINE MIR 13 203 -5 290 321 207 0 chr1 11104337 11104477 -271089187 - MIR SINE MIR -24 238 70 514 308 104 23 chr1 11104824 11105123 -271088541 - MLT1K LTR MaLR -128 460 138 307 115 0 0 chr1 11105176 11105228 -271088436 + MLT1G LTR MaLR 12 63 -532 694 149 104 52 chr1 11105245 11105399 -271088265 + MER70A LTR ERVL 1 162 -310 * 1634 218 52 8 chr1 11105395 11105762 -271087902 + MER70A LTR ERVL 90 472 0 341 315 11 11 chr1 11105762 11105925 -271087739 + MLT1G LTR MaLR 79 241 -308 686 219 25 6 chr1 11105942 11106102 -271087562 + MLT1G LTR MaLR 426 588 -2 219 69 0 0 chr1 11106104 11106133 -271087531 + (TG)n Simple_repeat Simple_repeat 1 29 0 604 324 49 0 chr1 11106823 11107027 -271086637 + MIR SINE MIR 4 217 -45 268 146 21 0 chr1 11108666 11108714 -271084950 + L2 LINE L2 3265 3313 0 208 385 83 0 chr1 11108815 11108924 -271084740 - L2 LINE L2 0 3272 3155 237 33 0 0 chr1 11109432 11109462 -271084202 + (CA)n Simple_repeat Simple_repeat 1 30 0 243 294 156 0 chr1 11110086 11110195 -271083469 + MIR3 SINE MIR 35 160 -48 758 186 8 0 chr1 11111138 11111262 -271082402 + AluJo SINE Alu 1 125 -187 704 143 8 0 chr1 11111264 11111390 -271082274 + GA-rich Low_complexity Low_complexity 1 127 0 789 175 88 29 chr1 11111403 11111574 -271082090 + AluJo SINE Alu 120 300 -12 1345 165 0 56 chr1 11111584 11111800 -271081864 + L1M4 LINE L1 4961 5155 -991 2097 106 33 0 chr1 11111800 11112102 -271081562 + AluSx SINE Alu 1 312 0 1345 165 0 56 chr1 11112102 11112206 -271081458 + L1M4 LINE L1 5155 5263 -883 588 259 90 21 chr1 11112227 11112416 -271081248 + MIR SINE MIR 50 251 -11 193 338 62 48 chr1 11112607 11112752 -271080912 + MER5A DNA MER1_type 15 161 -28 354 317 11 27 chr1 11113375 11113558 -271080106 + L1ME4a LINE L1 5733 5912 -209 1456 159 86 28 chr1 11113565 11113778 -271079886 + AluJo SINE Alu 6 242 -70 2379 188 38 23 chr1 11113778 11114257 -271079407 + MER66B LTR ERV1 1 486 0 1456 159 86 28 chr1 11114257 11114333 -271079331 + AluJo SINE Alu 242 312 0 417 211 48 78 chr1 11114369 11114535 -271079129 + L1ME4a LINE L1 5960 6120 -1 1535 228 78 42 chr1 11115110 11115561 -271078103 + MLT1C LTR MaLR 1 467 0 489 269 17 0 chr1 11115590 11115709 -271077955 - MIR SINE MIR -95 167 47 459 355 39 0 chr1 11115780 11115935 -271077729 + MIR SINE MIR 48 208 -54 515 270 40 3 chr1 11116805 11116956 -271076708 - MIR SINE MIR -62 146 30 1059 206 0 5 chr1 11117043 11117247 -271076417 + MER58A DNA MER1_type 22 224 0 194 425 45 0 chr1 11117250 11117384 -271076280 + MIR SINE MIR 113 252 -10 2271 82 16 3 chr1 11117389 11117692 -271075972 - AluY SINE Alu -4 307 1 2177 116 0 0 chr1 11117939 11118241 -271075423 - AluSq SINE Alu -11 302 1 600 259 6 36 chr1 11118609 11118775 -271074889 + MER91B DNA MER1_type 4 164 -26 260 325 12 0 chr1 11118783 11118863 -271074801 - L2 LINE L2 -54 3259 3179 635 204 43 10 chr1 11119458 11119631 -271074033 + MIR SINE MIR 1 176 -78 940 127 0 61 chr1 11319643 11319824 -270873840 - AluJb SINE Alu -134 178 9 321 152 29 21 chr1 11319928 11320018 -270873646 + Alu SINE Alu 242 297 -3 1835 123 0 38 chr1 11320040 11320356 -270873308 - AluJb SINE Alu 0 312 9 956 211 28 83 chr1 11320396 11320591 -270873073 + L1MC4 LINE L1 7650 7868 -174 2017 120 3 3 chr1 11320591 11320883 -270872781 - AluSx SINE Alu -20 292 1 956 211 28 83 chr1 11320883 11321049 -270872615 + L1MC4 LINE L1 7868 8042 0 1561 165 23 0 chr1 11321173 11321439 -270872225 - AluJb SINE Alu -40 272 1 2049 87 31 0 chr1 11321448 11321734 -270871930 - AluSp SINE Alu -18 295 1 680 259 13 13 chr1 11321766 11321924 -270871740 + AluJo SINE Alu 2 159 -153 269 26 26 0 chr1 11321926 11321964 -270871700 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 519 255 8 0 chr1 11322017 11322160 -270871504 - L1MC4 LINE L1 0 8042 7650 828 180 41 5 chr1 11322183 11322377 -270871287 + AluSx SINE Alu 1 201 -111 1095 175 60 5 chr1 11324713 11324930 -270868734 + AluJo SINE Alu 64 292 -20 1161 136 212 12 chr1 11324940 11325190 -270868474 + Tigger2 DNA MER2_type 2418 2717 -1 1094 161 11 0 chr1 11325199 11325385 -270868279 - AluJb SINE Alu -2 310 123 23 33 0 0 chr1 11325407 11325437 -270868227 + AT_rich Low_complexity Low_complexity 1 30 0 1072 192 0 60 chr1 11325477 11325711 -270867953 - AluJo SINE Alu -92 220 1 1116 128 174 58 chr1 11326156 11326414 -270867250 - MER7A DNA MER2_type -1 345 60 1817 117 4 7 chr1 11326489 11326763 -270866901 + AluSx SINE Alu 27 299 -13 288 0 0 0 chr1 11326789 11326821 -270866843 + (TG)n Simple_repeat Simple_repeat 2 33 0 475 141 13 13 chr1 11326839 11326917 -270866747 + AluJ/FLAM SINE Alu 6 83 -229 480 348 47 40 chr1 11327174 11327531 -270866133 - L2 LINE L2 -562 2752 2390 2208 99 0 3 chr1 11327531 11327833 -270865831 - AluSx SINE Alu -10 302 2 480 348 47 40 chr1 11327833 11327877 -270865787 - L2 LINE L2 -924 2390 2348 300 291 20 41 chr1 11328004 11328049 -270865615 + L1MA8 LINE L1 5784 5828 -463 1856 151 10 7 chr1 11328049 11328354 -270865310 + AluSx SINE Alu 1 306 -6 1011 155 21 5 chr1 11328354 11328541 -270865123 + L1PB4 LINE L1 5823 6012 -144 203 216 171 0 chr1 11329140 11329213 -270864451 - MIR SINE MIR -81 127 34 2283 93 0 3 chr1 11329288 11329601 -270864063 + AluSx SINE Alu 1 312 0 298 151 170 0 chr1 11329620 11329673 -270863991 + AluJ/FLAM SINE Alu 1 62 -240 2517 59 0 0 chr1 11329673 11329978 -270863686 + AluSx SINE Alu 1 305 -7 1690 135 7 28 chr1 11330371 11330510 -270863154 + AluSx SINE Alu 1 141 -171 1803 117 36 36 chr1 11330510 11330819 -270862845 + AluSq SINE Alu 1 309 -4 1690 135 7 28 chr1 11330819 11330968 -270862696 + AluSx SINE Alu 141 283 -29 292 275 33 22 chr1 11330981 11331072 -270862592 + L1MC3 LINE L1 7050 7141 -644 1384 170 61 11 chr1 11331257 11331534 -270862130 + AluJo SINE Alu 1 291 -21 1200 140 6 0 chr1 11331545 11331723 -270861941 + AluSc SINE Alu 1 179 -130 2063 84 7 3 chr1 11331906 11332190 -270861474 + AluSp SINE Alu 16 300 -13 1204 186 33 36 chr1 11332196 11332316 -270861348 + AluJb SINE Alu 1 120 -192 2362 80 3 0 chr1 11332316 11332616 -270861048 + AluSp SINE Alu 1 301 -12 1204 186 33 36 chr1 11332616 11332796 -270860868 + AluJb SINE Alu 120 300 -12 423 266 84 35 chr1 11332800 11332880 -270860784 + LTR33A LTR ERVL 309 384 -139 2507 128 79 12 chr1 11332880 11333308 -270860356 + MSTB2 LTR MaLR 1 457 0 423 266 84 35 chr1 11333308 11333430 -270860234 + LTR33A LTR ERVL 384 521 -2 1498 186 10 16 chr1 11333459 11333766 -270859898 + AluJb SINE Alu 1 305 -7 271 111 0 0 chr1 11333767 11333803 -270859861 + AluS SINE Alu 29 64 -239 1649 156 0 7 chr1 11334186 11334462 -270859202 + AluJo SINE Alu 9 282 -30 363 315 55 36 chr1 11334482 11334647 -270859017 - MIR SINE MIR 0 262 95 534 187 98 8 chr1 11334672 11334795 -270858869 - MIR3 SINE MIR -60 148 15 246 210 320 0 chr1 11335356 11335456 -270858208 - MIR SINE MIR -14 248 117 1951 86 41 0 chr1 11335460 11335728 -270857936 + AluSx SINE Alu 3 281 -31 216 0 0 0 chr1 11335735 11335759 -270857905 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 254 214 0 0 chr1 11335814 11335856 -270857808 + Tigger2 DNA MER2_type 2627 2668 -50 349 165 62 21 chr1 11336429 11336526 -270857138 - L1MC4 LINE L1 -464 7578 7478 2101 107 3 13 chr1 11336534 11336844 -270856820 + AluSg SINE Alu 1 307 -3 1283 143 152 0 chr1 11336852 11337096 -270856568 + AluJo SINE Alu 2 282 -30 625 300 29 63 chr1 11337118 11337332 -270856332 - L1MC5 LINE L1 -191 7770 7550 1929 147 3 6 chr1 11337332 11337645 -270856019 - AluJb SINE Alu 0 312 1 625 300 29 63 chr1 11337645 11337906 -270855758 - L1MC5 LINE L1 -411 7550 7311 610 267 21 62 chr1 11337948 11338040 -270855624 - L1MC4 LINE L1 -606 7436 7342 2507 50 0 3 chr1 11338040 11338342 -270855322 + AluY SINE Alu 1 301 -10 610 267 21 62 chr1 11338342 11338537 -270855127 - L1MC4 LINE L1 -700 7342 7161 2087 110 0 0 chr1 11338544 11338861 -270854803 - AluSg SINE Alu 0 317 1 1212 175 8 40 chr1 11338863 11339115 -270854549 - AluJo SINE Alu -10 302 59 622 85 85 0 chr1 11339215 11339309 -270854355 - AluSp SINE Alu -210 103 2 671 241 0 14 chr1 11339359 11339500 -270854164 + AluJo SINE Alu 21 159 -153 351 0 0 0 chr1 11339502 11339541 -270854123 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 2123 52 48 0 chr1 11339542 11339837 -270853827 + AluY SINE Alu 1 308 0 2137 87 30 3 chr1 11339871 11340170 -270853494 - AluSq SINE Alu -4 309 3 2106 119 0 0 chr1 11340308 11340602 -270853062 + AluSx SINE Alu 1 294 -18 305 264 28 0 chr1 11341018 11341090 -270852574 + MIR SINE MIR 79 152 -110 1689 179 0 3 chr1 11341103 11341400 -270852264 + AluJo SINE Alu 2 297 -15 2416 58 0 3 chr1 11341553 11341865 -270851799 + AluY SINE Alu 1 311 0 1562 108 84 0 chr1 11341890 11342140 -270851524 + AluSx SINE Alu 34 304 -8 204 40 0 0 chr1 11342140 11342165 -270851499 + (GA)n Simple_repeat Simple_repeat 1 25 0 299 132 66 0 chr1 11342183 11342259 -270851405 + GA-rich Low_complexity Low_complexity 1 81 0 1722 98 81 28 chr1 11342271 11342556 -270851108 + AluSx SINE Alu 11 310 -2 194 260 0 40 chr1 11342632 11342682 -270850982 + MIR SINE MIR 45 92 -170 1018 110 0 7 chr1 11342704 11342858 -270850806 - AluSg/x SINE Alu -32 278 126 497 241 109 7 chr1 11342859 11342996 -270850668 + MIR SINE MIR 85 235 -27 181 29 29 57 chr1 11343147 11343182 -270850482 + (CCCCG)n Simple_repeat Simple_repeat 5 38 0 249 255 0 0 chr1 11344333 11344384 -270849280 + L2 LINE L2 3221 3271 -1 2058 121 10 0 chr1 11345525 11345831 -270847833 + AluSq SINE Alu 1 309 -4 1028 117 7 0 chr1 11345833 11345987 -270847677 + AluSc SINE Alu 139 293 -16 1948 128 7 0 chr1 11346072 11346360 -270847304 + AluSx SINE Alu 1 290 -22 1140 108 0 0 chr1 11346392 11346550 -270847114 + AluSg/x SINE Alu 137 294 -18 1191 109 10 10 chr1 11346602 11346778 -270846886 - AluSg/x SINE Alu 0 309 131 2079 91 0 14 chr1 11346778 11347107 -270846557 - AluSg SINE Alu 0 310 1 1191 109 10 10 chr1 11347107 11347122 -270846542 - AluSg/x SINE Alu -177 132 118 739 169 70 58 chr1 11347140 11347312 -270846352 - FAM SINE Alu 0 175 2 420 183 154 19 chr1 11347949 11348053 -270845611 - FLAM_C SINE Alu -15 118 1 2068 96 17 3 chr1 11348067 11348369 -270845295 - AluSq SINE Alu -7 306 1 629 165 0 9 chr1 11348642 11348746 -270844918 + AluJo/FLAM SINE Alu 9 112 -196 2408 72 0 0 chr1 11348746 11349050 -270844614 - AluY SINE Alu -7 304 1 1812 145 3 10 chr1 11349054 11349357 -270844307 - AluJo SINE Alu -11 301 1 1416 177 110 49 chr1 11350180 11350440 -270843224 + MER7A DNA MER2_type 1 244 -2794 2194 99 0 0 chr1 11350440 11350734 -270842930 - AluY SINE Alu -17 294 1 2077 106 17 0 chr1 11350735 11351028 -270842636 - AluSq SINE Alu -15 298 1 1416 177 110 49 chr1 11351028 11351093 -270842571 + MER7A DNA MER2_type 243 346 0 1958 104 7 30 chr1 11351495 11351792 -270841872 + AluSc SINE Alu 1 290 -19 2161 100 0 7 chr1 11352009 11352309 -270841355 - AluSq SINE Alu -15 298 1 880 114 0 8 chr1 11352312 11352443 -270841221 - AluSq/x SINE Alu -180 133 4 1384 145 9 109 chr1 11352454 11352785 -270840879 - AluJo SINE Alu -14 298 1 346 192 0 26 chr1 11357008 11357086 -270836578 - L1ME LINE L1 -468 5653 5578 2019 105 25 0 chr1 11358810 11359096 -270834568 + AluSq SINE Alu 1 293 -20 2117 93 0 0 chr1 11359570 11359850 -270833814 - AluY SINE Alu 0 311 32 2361 73 0 25 chr1 11359852 11360168 -270833496 - AluY SINE Alu -3 308 1 607 77 0 0 chr1 11360196 11360274 -270833390 + AluSc SINE Alu 208 285 -24 1877 105 73 0 chr1 11360503 11360789 -270832875 - AluSp SINE Alu -6 307 1 885 157 25 6 chr1 11361820 11361979 -270831685 + AluJo SINE Alu 33 194 -118 2347 59 0 20 chr1 11362110 11362415 -270831249 + AluY SINE Alu 1 299 -12 1430 154 81 0 chr1 11362517 11362789 -270830875 + AluJb SINE Alu 1 294 -18 860 178 29 23 chr1 11362909 11363083 -270830581 + AluJo SINE Alu 86 260 -52 1968 122 10 0 chr1 11363198 11363493 -270830171 + AluSx SINE Alu 1 298 -14 2118 112 0 0 chr1 11363495 11363791 -270829873 + AluSx SINE Alu 1 296 -16 266 140 53 0 chr1 11363851 11363908 -270829756 + L1ME4a LINE L1 6059 6118 -3 2347 78 3 0 chr1 11363915 11364223 -270829441 + AluSp SINE Alu 1 309 -4 1918 148 3 3 chr1 11364231 11364536 -270829128 + AluSx SINE Alu 1 305 -7 1740 98 8 8 chr1 11364551 11364795 -270828869 + AluSx SINE Alu 35 278 -34 360 0 0 0 chr1 11364795 11364835 -270828829 + (CA)n Simple_repeat Simple_repeat 2 41 0 189 0 0 0 chr1 11364834 11364855 -270828809 + (TC)n Simple_repeat Simple_repeat 1 21 0 * 1722 128 4 18 chr1 11364858 11365131 -270828533 + AluSx SINE Alu 35 303 -9 2023 139 0 3 chr1 11365286 11365596 -270828068 + AluJb SINE Alu 3 311 -1 1887 129 0 11 chr1 11366110 11366397 -270827267 + AluSx SINE Alu 1 284 -28 261 0 0 0 chr1 11366397 11366426 -270827238 + (CAT)n Simple_repeat Simple_repeat 2 30 0 2086 122 3 3 chr1 11366481 11366785 -270826879 + AluJb SINE Alu 1 304 -8 2848 6 0 0 chr1 11367092 11367409 -270826255 + AluYb8 SINE Alu 2 318 0 1463 134 20 108 chr1 11367913 11368257 -270825407 - AluYb8 SINE Alu -4 314 1 469 218 205 51 chr1 11369058 11369214 -270824450 + MIR SINE MIR 48 227 -35 214 291 39 10 chr1 11369630 11369733 -270823931 + L3 LINE CR1 1250 1355 -222 371 282 76 86 chr1 11369866 11370157 -270823507 + L2 LINE L2 2924 3211 -61 671 158 7 0 chr1 11370169 11370315 -270823349 + (TGGA)n Simple_repeat Simple_repeat 2 148 0 856 150 6 6 chr1 11370368 11370548 -270823116 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 741 333 0 8 chr1 11370570 11371105 -270822559 + (TGGA)n Simple_repeat Simple_repeat 1 530 0 357 131 0 0 chr1 11371129 11371190 -270822474 + (TGGA)n Simple_repeat Simple_repeat 1 61 0 766 195 2 7 chr1 11371213 11371625 -270822039 + (TGGA)n Simple_repeat Simple_repeat 1 410 0 482 239 4 4 chr1 11371650 11371885 -270821779 + (TGGA)n Simple_repeat Simple_repeat 1 235 0 186 263 18 0 chr1 11373786 11373843 -270819821 + MIR SINE MIR 91 148 -60 183 280 80 0 chr1 11374947 11375022 -270818642 - MIR SINE MIR -149 113 33 295 292 32 20 chr1 11375045 11375164 -270818500 - MIR SINE MIR -84 124 1 2099 120 0 0 chr1 11375194 11375495 -270818169 - AluSx SINE Alu -11 301 1 1750 145 25 0 chr1 11376634 11376917 -270816747 - AluSx SINE Alu -22 290 1 330 241 69 48 chr1 11376967 11377002 -270816662 - HAL1 LINE L1 -2265 242 209 2272 109 0 0 chr1 11377002 11377306 -270816358 + AluSg SINE Alu 1 304 -6 330 241 69 48 chr1 11377306 11377415 -270816249 - HAL1 LINE L1 -2298 209 95 833 136 0 8 chr1 11377438 11377570 -270816094 - FLAM_C SINE Alu -2 141 11 1729 73 5 0 chr1 11377571 11377791 -270815873 - AluSp SINE Alu -92 221 1 1534 188 0 34 chr1 11377817 11378115 -270815549 + AluJo SINE Alu 1 288 -24 323 269 75 45 chr1 11378133 11378334 -270815330 + HAL1 LINE L1 1288 1494 -1013 1358 106 45 0 chr1 11378343 11378542 -270815122 + AluSg/x SINE Alu 100 307 -3 2009 108 7 0 chr1 11378543 11378820 -270814844 - AluSg SINE Alu -31 279 1 201 147 0 0 chr1 11378833 11378867 -270814797 + (A)n Simple_repeat Simple_repeat 1 34 0 620 272 152 18 chr1 11378892 11378910 -270814754 - LTR8 LTR ERV1 -445 246 232 2363 55 7 0 chr1 11378910 11379200 -270814464 + AluY SINE Alu 1 292 -19 620 272 152 18 chr1 11379200 11379398 -270814266 - LTR8 LTR ERV1 -459 232 1 514 269 66 5 chr1 11379457 11379654 -270814010 + HAL1 LINE L1 1886 2094 -413 300 119 0 0 chr1 11379655 11379697 -270813967 + Alu SINE Alu 1 42 -261 1727 73 17 0 chr1 11379700 11379932 -270813732 - AluSp SINE Alu -8 305 70 529 90 26 0 chr1 11379936 11380014 -270813650 + AluS SINE Alu 14 93 -220 1609 89 0 0 chr1 11380035 11380249 -270813415 - AluSq SINE Alu -95 218 5 554 131 0 0 chr1 11380289 11380373 -270813291 - LTR26E LTR ERV1 -497 125 42 204 219 0 0 chr1 11380376 11380417 -270813247 + T-rich Low_complexity Low_complexity 3 43 0 1887 129 23 20 chr1 11380423 11380516 -270813148 - AluSx SINE Alu -1 311 220 5279 77 25 9 chr1 11380516 11381196 -270812468 - LTR8 LTR ERV1 0 691 1 1887 129 23 20 chr1 11381196 11381404 -270812260 - AluSx SINE Alu -92 220 9 333 247 75 34 chr1 11381436 11381582 -270812082 - MER21B LTR ERV1 -614 249 98 1778 101 73 31 chr1 11384303 11384591 -270809073 - AluSx SINE Alu -12 300 1 2308 71 0 3 chr1 11384600 11384896 -270808768 - AluY SINE Alu -15 296 2 189 107 0 0 chr1 11385142 11385170 -270808494 + (CCCCG)n Simple_repeat Simple_repeat 2 29 0 213 143 0 24 chr1 11385340 11385382 -270808282 - MIR SINE MIR -175 87 47 1507 160 78 3 chr1 11386057 11386339 -270807325 - AluJo SINE Alu -9 303 1 1158 126 248 4 chr1 11386506 11386744 -270806920 - AluY SINE Alu -5 296 1 479 310 53 50 chr1 11386763 11386958 -270806706 + L2 LINE L2 2942 3140 -132 2105 125 0 0 chr1 11386958 11387261 -270806403 - AluSx SINE Alu -9 303 1 479 310 53 50 chr1 11387261 11387388 -270806276 + L2 LINE L2 3140 3265 -7 2244 92 3 3 chr1 11387461 11387766 -270805898 + AluSp SINE Alu 1 305 -8 47 78 0 0 chr1 11389081 11389184 -270804480 + GC_rich Low_complexity Low_complexity 1 103 0 30 45 0 0 chr1 11389229 11389273 -270804391 + GC_rich Low_complexity Low_complexity 1 44 0 192 75 38 57 chr1 11389400 11389453 -270804211 + (CCGGG)n Simple_repeat Simple_repeat 3 54 0 2135 82 0 26 chr1 11390357 11390660 -270803004 + AluSc SINE Alu 3 297 -12 836 134 16 0 chr1 11390670 11390797 -270802867 + FLAM_C SINE Alu 2 130 -3 219 333 48 24 chr1 11390977 11391061 -270802603 + L2 LINE L2 3103 3188 -84 2097 132 3 0 chr1 11391654 11391965 -270801699 + AluSx SINE Alu 1 312 0 227 53 0 26 chr1 11391982 11392020 -270801644 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 2029 126 0 0 chr1 11392856 11393178 -270800486 + AluSx SINE Alu 1 322 0 2097 92 44 3 chr1 11393449 11393742 -270799922 + AluSq SINE Alu 1 305 -8 2263 87 0 19 chr1 11393754 11394064 -270799600 + AluSq SINE Alu 1 304 -9 1366 231 143 24 chr1 11394105 11394559 -270799105 + MLT1J LTR MaLR 4 511 0 597 153 8 6 chr1 11395071 11395319 -270798345 + AluJo SINE Alu 1 297 -15 2128 123 0 0 chr1 11395354 11395663 -270798001 - AluY SINE Alu -2 309 1 1944 117 0 18 chr1 11396197 11396332 -270797332 + AluSx SINE Alu 1 137 -175 2413 53 0 3 chr1 11396332 11396635 -270797029 + AluY SINE Alu 1 302 -9 1944 117 0 18 chr1 11396635 11396780 -270796884 + AluSx SINE Alu 137 276 -36 180 77 0 0 chr1 11396785 11396811 -270796853 + (CAAAC)n Simple_repeat Simple_repeat 2 27 0 1554 162 12 58 chr1 11399136 11399463 -270794201 + AluJo SINE Alu 1 312 0 1230 181 4 21 chr1 11399490 11399728 -270793936 + AluJo SINE Alu 73 306 -6 1122 262 154 11 chr1 11400467 11400993 -270792671 + L2 LINE L2 2375 2975 -339 497 296 95 0 chr1 11401547 11401726 -270791938 - MIR SINE MIR -21 241 46 321 215 0 0 chr1 11402199 11402278 -270791386 + L1ME3 LINE L1 6084 6162 0 2207 84 7 0 chr1 11402318 11402614 -270791050 - AluY SINE Alu -13 298 1 2128 99 41 0 chr1 11402790 11403083 -270790581 + AluSx SINE Alu 1 305 -7 2214 96 0 13 chr1 11403596 11403899 -270789765 - AluSx SINE Alu -13 299 1 452 310 57 6 chr1 11404032 11404190 -270789474 - MIR SINE MIR -79 183 18 1933 98 54 0 chr1 11404224 11404501 -270789163 - AluSx SINE Alu -20 292 1 366 333 60 25 chr1 11404622 11404823 -270788841 - L3 LINE CR1 -525 1052 845 1444 140 0 13 chr1 11404837 11405066 -270788598 + AluJb SINE Alu 87 312 0 2126 117 7 3 chr1 11405067 11405376 -270788288 + AluSq SINE Alu 2 311 -2 1018 152 19 6 chr1 11405384 11405542 -270788122 + FRAM SINE Alu 1 160 -6 2056 132 3 0 chr1 11406170 11406473 -270787191 - AluSq SINE Alu -9 304 1 261 276 118 16 chr1 11406904 11407031 -270786633 + L2 LINE L2 3174 3313 0 1497 159 40 40 chr1 11407183 11407443 -270786221 + AluJo SINE Alu 11 273 -39 2640 14 0 0 chr1 11407443 11407739 -270785925 - AluYa5 SINE Alu -15 296 1 1497 159 40 40 chr1 11407739 11407780 -270785884 + AluJo SINE Alu 272 312 0 2220 88 10 0 chr1 11408235 11408540 -270785124 + AluSx SINE Alu 5 312 0 2321 74 3 3 chr1 11408577 11408876 -270784788 - AluSx SINE Alu -13 299 1 378 0 0 0 chr1 11409746 11409788 -270783876 + (CA)n Simple_repeat Simple_repeat 2 43 0 549 287 111 0 chr1 11410702 11410883 -270782781 + MIR SINE MIR 47 247 -15 2354 72 13 0 chr1 11410983 11411287 -270782377 + AluSp SINE Alu 1 308 -5 180 0 0 0 chr1 11411510 11411530 -270782134 + (CA)n Simple_repeat Simple_repeat 1 20 0 1584 135 12 4 chr1 11412179 11412431 -270781233 - AluJb SINE Alu -58 254 1 2268 99 10 0 chr1 11412465 11412768 -270780896 + AluSp SINE Alu 1 306 -7 18264 30 7 1 chr1 11412806 11415727 -270777937 - L1PA3 LINE L1 0 6155 3225 4000 20 0 0 chr1 11415727 11416232 -270777432 + L1PA3 LINE L1 2714 3218 -2928 1515 170 29 36 chr1 11418121 11418427 -270775237 + AluJo SINE Alu 1 304 -8 2093 111 3 37 chr1 11418510 11418834 -270774830 + AluSq SINE Alu 1 313 0 1394 164 77 25 chr1 11418858 11419132 -270774532 + AluJo SINE Alu 1 288 -24 2381 86 0 0 chr1 11419177 11419480 -270774184 - AluSx SINE Alu -9 303 1 272 323 0 21 chr1 11419486 11419582 -270774082 + MIR SINE MIR 125 218 -44 816 180 0 0 chr1 11419929 11420068 -270773596 - AluJb SINE Alu -7 305 167 1905 90 3 109 chr1 11420847 11421168 -270772496 - AluSg1 SINE Alu -18 291 5 1400 165 65 62 chr1 11421290 11421399 -270772265 + MER47A DNA MER2_type 2 109 -2214 2344 105 7 0 chr1 11421399 11421695 -270771969 - AluSc SINE Alu -11 298 1 2280 122 0 3 chr1 11421698 11422001 -270771663 - AluSx SINE Alu -10 302 1 1400 165 65 62 chr1 11422001 11422227 -270771437 + MER47A DNA MER2_type 110 342 -24 21 0 0 0 chr1 11422257 11422278 -270771386 + AT_rich Low_complexity Low_complexity 1 21 0 638 287 121 48 chr1 11422410 11422765 -270770899 + L3 LINE CR1 930 1310 -267 1697 171 0 48 chr1 11422967 11423282 -270770382 + AluJo SINE Alu 2 301 -11 792 152 0 36 chr1 11423321 11423459 -270770205 - AluJo SINE Alu -178 134 2 2152 121 0 20 chr1 11423478 11423783 -270769881 - AluSq SINE Alu -14 299 1 2199 105 14 3 chr1 11423786 11424082 -270769582 - AluSx SINE Alu -13 299 1 2138 126 3 0 chr1 11424122 11424415 -270769249 + AluSq SINE Alu 11 304 -9 2579 62 0 3 chr1 11424614 11424920 -270768744 + AluY SINE Alu 1 305 -6 1778 133 8 0 chr1 11425171 11425426 -270768238 - AluSx SINE Alu -15 297 41 1454 127 10 0 chr1 11425426 11425631 -270768033 - AluSx SINE Alu -105 207 1 1912 170 0 16 chr1 11425642 11425959 -270767705 - AluJo SINE Alu 0 312 1 1994 108 70 3 chr1 11425998 11426112 -270767552 + AluSg SINE Alu 1 106 -204 2097 117 7 23 chr1 11426112 11426412 -270767252 + AluSg SINE Alu 1 295 -15 1994 108 70 3 chr1 11426412 11426584 -270767080 + AluSg SINE Alu 106 306 -4 2525 68 0 0 chr1 11426625 11426921 -270766743 + AluY SINE Alu 1 296 -15 247 293 143 43 chr1 11427432 11427572 -270766092 - L2 LINE L2 -5 3308 3155 662 267 58 26 chr1 11427590 11427781 -270765883 + MIR SINE MIR 45 241 -21 28 71 0 0 chr1 11429097 11429153 -270764511 + GC_rich Low_complexity Low_complexity 1 56 0 516 178 89 0 chr1 11429438 11429539 -270764125 - FLAM_A SINE Alu -22 120 11 792 153 127 25 chr1 11429571 11429728 -270763936 + AluJb SINE Alu 115 287 -25 2148 104 38 0 chr1 11429753 11430040 -270763624 + AluSx SINE Alu 1 298 -14 494 201 188 26 chr1 11430072 11430120 -270763544 - AluJo SINE Alu -132 180 141 2318 82 3 13 chr1 11430120 11430423 -270763241 - AluSg SINE Alu -10 300 1 1914 92 92 42 chr1 11430425 11430709 -270762955 - AluSx SINE Alu -14 298 1 494 201 188 26 chr1 11430709 11430811 -270762853 - AluJo SINE Alu -171 141 2 630 285 58 47 chr1 11430816 11431177 -270762487 + L2 LINE L2 1527 1891 -1423 424 321 88 16 chr1 11431481 11431674 -270761990 - MIR SINE MIR -27 235 29 2371 93 3 7 chr1 11431678 11431980 -270761684 - AluSg SINE Alu -9 301 1 2001 170 0 0 chr1 11432008 11432319 -270761345 + AluJb SINE Alu 1 311 -1 1081 136 212 12 chr1 11432328 11432578 -270761086 - Tigger2 DNA MER2_type -1 2717 2418 1679 178 43 4 chr1 11432588 11432869 -270760795 - AluJo SINE Alu -20 292 1 1131 98 20 0 chr1 11433274 11433427 -270760237 - AluSg/x SINE Alu -20 292 137 2182 117 7 0 chr1 11433428 11433719 -270759945 - AluSx SINE Alu -19 293 1 1569 174 0 7 chr1 11433766 11433856 -270759808 + AluJb SINE Alu 37 126 -186 7465 95 17 22 chr1 11433856 11434933 -270758731 + MER11C LTR ERVK 1 1071 0 1569 174 0 7 chr1 11434933 11435112 -270758552 + AluJb SINE Alu 126 304 -8 272 240 0 13 chr1 11435299 11435374 -270758290 - MER116 DNA Mariner -2 78 5 242 327 44 68 chr1 11435420 11435671 -270757993 + L2 LINE L2 2941 3185 -87 182 247 49 49 chr1 11436803 11436884 -270756780 - L3 LINE CR1 -908 669 589 2471 100 3 0 chr1 11437693 11438004 -270755660 + AluSx SINE Alu 1 312 0 1741 96 42 4 chr1 11438024 11438264 -270755400 + AluSq SINE Alu 51 299 -14 536 139 139 20 chr1 11439172 11439273 -270754391 + FLAM_A SINE Alu 22 134 -8 2176 104 24 0 chr1 11439669 11439956 -270753708 - AluSp SINE Alu -17 296 3 557 160 198 0 chr1 11439992 11440098 -270753566 - FLAM_C SINE Alu -16 127 1 2375 112 0 6 chr1 11440459 11440772 -270752892 + AluSx SINE Alu 1 311 -1 219 36 0 0 chr1 11441222 11441250 -270752414 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 27 49 0 0 chr1 11442828 11442869 -270750795 + AT_rich Low_complexity Low_complexity 1 41 0 1728 177 6 29 chr1 11442869 11443040 -270750624 - AluJo SINE Alu -8 304 142 2577 114 5 13 chr1 11443040 11443418 -270750246 + THE1C LTR MaLR 1 375 0 1728 177 6 29 chr1 11443418 11443557 -270750107 - AluJo SINE Alu -170 142 1 262 237 0 0 chr1 11444322 11444381 -270749283 + A-rich Low_complexity Low_complexity 1 59 0 964 226 9 22 chr1 11444814 11445040 -270748624 + MER58A DNA MER1_type 2 224 0 1975 170 17 0 chr1 11445578 11445872 -270747792 - AluJb SINE Alu -13 299 1 651 162 90 0 chr1 11445939 11446050 -270747614 - FLAM_C SINE Alu -11 122 2 2170 112 0 0 chr1 11446437 11446723 -270746941 - AluSx SINE Alu -26 286 1 241 132 26 0 chr1 11447016 11447054 -270746610 - Alu SINE Alu -264 39 1 742 185 155 22 chr1 11447069 11447301 -270746363 + MER2 DNA MER2_type 83 345 0 194 28 0 83 chr1 11447309 11447345 -270746319 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 2265 98 7 3 chr1 11448606 11448901 -270744763 - AluSc SINE Alu -13 296 1 2397 89 0 3 chr1 11448904 11449207 -270744457 - AluSg SINE Alu -7 303 2 36 53 0 0 chr1 11449608 11449665 -270743999 + AT_rich Low_complexity Low_complexity 1 57 0 931 166 72 17 chr1 11449665 11449846 -270743818 - AluJb SINE Alu -17 295 105 1502 208 10 3 chr1 11449876 11450165 -270743499 - AluJo SINE Alu -18 294 4 2386 105 0 6 chr1 11450173 11450488 -270743176 - AluSq SINE Alu 0 313 1 717 194 0 50 chr1 11450491 11450630 -270743034 - AluJo/FLAM SINE Alu -170 132 1 993 151 16 43 chr1 11450630 11450815 -270742849 - AluJo SINE Alu -20 292 113 451 291 158 65 chr1 11451303 11451701 -270741963 + LTR33 LTR ERVL 38 472 -49 2052 136 7 7 chr1 11451849 11452151 -270741513 + AluSx SINE Alu 1 302 -10 2409 104 3 0 chr1 11452162 11452469 -270741195 + AluSq SINE Alu 1 308 -5 616 192 14 55 chr1 11456267 11456413 -270737251 + MIR SINE MIR 111 250 -12 222 231 0 0 chr1 11457010 11457075 -270736589 + (TGG)n Simple_repeat Simple_repeat 2 66 0 315 216 136 0 chr1 11458364 11458452 -270735212 - L2 LINE L2 -1 3271 3172 565 254 35 56 chr1 11459985 11460182 -270733482 - MIR SINE MIR -5 257 65 1001 138 141 145 chr1 11460185 11460475 -270733189 + AluJo SINE Alu 6 294 -18 2441 80 10 0 chr1 11461954 11462255 -270731409 + AluSx SINE Alu 1 304 -8 2435 96 0 0 chr1 11462255 11462558 -270731106 + AluSx SINE Alu 1 303 -9 240 234 78 84 chr1 11462586 11462753 -270730911 - L2 LINE L2 -165 3107 2942 1162 126 248 4 chr1 11462772 11463010 -270730654 + AluY SINE Alu 1 296 -5 1606 160 78 3 chr1 11463177 11463459 -270730205 + AluJo SINE Alu 1 303 -9 222 143 0 24 chr1 11464134 11464176 -270729488 + MIR SINE MIR 47 87 -175 189 107 0 0 chr1 11464346 11464374 -270729290 + (CGGGG)n Simple_repeat Simple_repeat 2 29 0 200 242 129 0 chr1 11465204 11465266 -270728398 - MIR SINE MIR -123 139 70 183 312 26 26 chr1 11465982 11466059 -270727605 - MIR SINE MIR -59 149 73 2276 94 0 0 chr1 11467034 11467322 -270726342 - AluSg SINE Alu -22 288 1 887 144 8 0 chr1 11467324 11467456 -270726208 - AluSq/x SINE Alu -179 133 1 1707 136 136 20 chr1 11467578 11467880 -270725784 - MER1B DNA MER1_type 0 337 1 580 209 104 8 chr1 11467928 11468062 -270725602 + MIR SINE MIR 50 196 -66 1871 154 18 0 chr1 11468450 11468730 -270724934 - AluJb SINE Alu -11 301 17 2002 121 0 4 chr1 11468730 11469002 -270724662 - AluSx SINE Alu -41 271 1 21 0 0 0 chr1 11469010 11469031 -270724633 + AT_rich Low_complexity Low_complexity 1 21 0 1212 111 6 6 chr1 11469216 11469396 -270724268 + AluY SINE Alu 132 311 0 344 153 17 0 chr1 11469598 11469657 -270724007 + AluS SINE Alu 1 60 -241 2158 110 0 27 chr1 11469662 11469962 -270723702 - AluSx SINE Alu -20 292 1 926 150 72 6 chr1 11471551 11471718 -270721946 - MER5B DNA MER1_type 0 178 1 1552 118 83 55 chr1 11472744 11473033 -270720631 - AluSx SINE Alu -15 297 1 1009 104 0 0 chr1 11473033 11473168 -270720496 - AluSq/x SINE Alu -177 135 1 444 270 149 22 chr1 11476142 11476393 -270717271 + MLT1J LTR MaLR 235 458 -53 392 257 0 35 chr1 11476409 11476522 -270717142 + MER21B LTR ERV1 1 109 -754 2235 69 7 0 chr1 11476677 11476967 -270716697 + AluSg SINE Alu 1 292 -18 469 127 0 0 chr1 11477006 11477069 -270716595 - AluJb SINE Alu -193 119 57 1152 153 39 10 chr1 11477656 11477815 -270715849 + MER3 DNA MER1_type 1 169 -40 2132 135 0 0 chr1 11477815 11478127 -270715537 + AluSx SINE Alu 1 312 0 1152 153 39 10 chr1 11478127 11478170 -270715494 + MER3 DNA MER1_type 169 209 0 279 0 0 0 chr1 11478196 11478227 -270715437 + (CAA)n Simple_repeat Simple_repeat 2 32 0 671 153 0 0 chr1 11478320 11478418 -270715246 - AluJ/FLAM SINE Alu -213 99 2 32 75 0 0 chr1 11478419 11478486 -270715178 + AT_rich Low_complexity Low_complexity 1 67 0 1042 193 9 32 chr1 11478673 11478891 -270714773 + AluJo SINE Alu 85 297 -15 1058 177 0 10 chr1 11478891 11479083 -270714581 + AluJo SINE Alu 1 190 -122 410 256 38 23 chr1 11479201 11479334 -270714330 + L1MC4a LINE L1 5765 5899 -1909 310 265 137 20 chr1 11479368 11479470 -270714194 + MER34 LTR ERV1 1 114 -428 * 491 229 38 105 chr1 11479445 11479655 -270714009 + MER39 LTR ERV1 250 445 -262 474 308 104 46 chr1 11479662 11479922 -270713742 + L2 LINE L2 2997 3271 -1 2485 51 0 19 chr1 11480008 11480323 -270713341 - AluY SINE Alu -2 309 1 872 164 25 6 chr1 11480454 11480613 -270713051 - AluJo SINE Alu -118 194 33 2125 101 3 0 chr1 11481054 11481378 -270712286 - AluSp SINE Alu 0 325 1 865 281 14 0 chr1 11481502 11481719 -270711945 + MIR SINE MIR 29 248 -14 25448 75 4 7 chr1 11481781 11485042 -270708622 + L1P LINE L1 4 3258 -2888 2274 68 31 0 chr1 11485042 11485334 -270708330 + AluY SINE Alu 1 301 -10 25448 75 4 7 chr1 11485334 11485447 -270708217 + L1P LINE L1 3258 3370 -2776 405 52 35 0 chr1 11485575 11485633 -270708031 + AluSc SINE Alu 236 295 -14 1855 152 24 0 chr1 11486210 11486500 -270707164 + AluJo SINE Alu 1 297 -15 442 147 0 13 chr1 11487125 11487200 -270706464 - HsTC2 DNA Tc2 -1824 74 1 316 226 145 8 chr1 11488365 11488489 -270705175 + L1ME4a LINE L1 5803 5943 -178 1084 53 0 0 chr1 11488863 11488995 -270704669 + AluSg/x SINE Alu 160 291 -18 801 165 0 0 chr1 11489029 11489150 -270704514 - AluJb SINE Alu -190 122 2 463 242 40 0 chr1 11489350 11489449 -270704215 + MER21B LTR ERV1 140 242 -621 1883 201 106 26 chr1 11489476 11489938 -270703726 + MER21B LTR ERV1 329 827 -36 967 175 44 11 chr1 11491573 11491756 -270701908 - MER5A DNA MER1_type 0 189 1 191 309 55 45 chr1 11491758 11491868 -270701796 + L3 LINE CR1 1455 1565 -12 531 47 16 0 chr1 11492435 11492499 -270701165 + U6 snRNA snRNA 1 65 -42 305 268 0 0 chr1 11493121 11493201 -270700463 + MIR3 SINE MIR 100 180 -28 975 142 27 0 chr1 11493713 11493861 -270699803 + MER3 DNA MER1_type 1 152 -57 2050 146 0 0 chr1 11493872 11494181 -270699483 + AluSx SINE Alu 1 309 -3 1745 108 12 0 chr1 11494183 11494456 -270699208 + AluY SINE Alu 32 307 0 2016 108 24 0 chr1 11494929 11495217 -270698447 - AluSq SINE Alu -18 295 1 275 221 13 26 chr1 11496984 11497061 -270696603 + L1ME LINE L1 5578 5653 -468 7485 39 3 1 chr1 11497218 11498522 -270695142 + L1PA5 LINE L1 4850 6154 0 1717 86 4 4 chr1 11499051 11499285 -270694379 + AluY SINE Alu 1 234 -77 989 184 0 0 chr1 11499504 11499678 -270693986 + AluSg/x SINE Alu 136 309 -3 253 215 92 0 chr1 11499679 11499744 -270693920 + MIR3 SINE MIR 137 207 -1 374 351 31 51 chr1 11499906 11500062 -270693602 - L2 LINE L2 -5 3308 3159 2181 97 3 3 chr1 11500062 11500361 -270693303 + AluSp SINE Alu 1 299 -14 374 351 31 51 chr1 11500361 11500497 -270693167 - L2 LINE L2 -154 3159 3022 239 356 44 0 chr1 11500535 11500625 -270693039 - MIR SINE MIR -2 260 167 2468 259 75 50 chr1 11500625 11501426 -270692238 - L1ME3A LINE L1 -13 6157 5297 825 181 0 0 chr1 11501426 11501559 -270692105 - FLAM_A SINE Alu 0 133 1 2468 259 75 50 chr1 11501559 11501925 -270691739 - L1ME3A LINE L1 -873 5297 4942 546 295 63 0 chr1 11502094 11502284 -270691380 - L1ME3A LINE L1 -1287 4859 4658 461 274 78 34 chr1 11502284 11502463 -270691201 - MIR SINE MIR -73 189 3 1508 186 13 10 chr1 11502579 11502886 -270690778 + AluJo SINE Alu 1 308 -4 201 330 175 19 chr1 11503020 11503226 -270690438 + L2 LINE L2 2815 3052 -220 1440 143 13 101 chr1 11503421 11503728 -270689936 + AluJb SINE Alu 1 280 -32 231 36 0 0 chr1 11503728 11503756 -270689908 + (CAAAA)n Simple_repeat Simple_repeat 5 32 0 2132 101 0 7 chr1 11503927 11504233 -270689431 + AluY SINE Alu 1 304 -7 2324 122 0 48 chr1 11505383 11505737 -270687927 - MER1B DNA MER1_type 0 337 1 188 273 22 29 chr1 11508636 11508704 -270684960 - MIR SINE MIR -105 103 51 1943 123 43 7 chr1 11510931 11511232 -270682432 + AluSx SINE Alu 1 312 0 1751 131 28 17 chr1 11511490 11511781 -270681883 + AluSq SINE Alu 3 296 -17 325 284 53 11 chr1 11512287 11512382 -270681282 + MER91B DNA MER1_type 37 135 -55 2242 98 3 0 chr1 11515030 11515336 -270678328 + AluSc SINE Alu 1 307 -2 213 39 0 0 chr1 11515983 11516009 -270677655 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 2019 121 7 3 chr1 11516010 11516300 -270677364 - AluSx SINE Alu -21 291 1 604 173 181 0 chr1 11518309 11518442 -270675222 + MER3 DNA MER1_type 53 209 0 243 211 19 0 chr1 11518401 11518453 -270675211 - MER3 DNA MER1_type -121 88 36 * 2339 77 0 0 chr1 11519191 11519488 -270674176 + AluY SINE Alu 1 297 -14 505 221 9 9 chr1 11519523 11519636 -270674028 + FLAM_A SINE Alu 19 131 -11 263 231 143 14 chr1 11520033 11520180 -270673484 - L1ME4a LINE L1 0 6121 5956 1571 191 7 3 chr1 11520275 11520563 -270673101 - AluJo SINE Alu -23 289 1 2084 105 27 0 chr1 11520605 11520899 -270672765 + AluY SINE Alu 1 302 -9 941 120 12 32 chr1 11520931 11521094 -270672570 + L1PB4 LINE L1 6010 6163 -3 22 0 0 0 chr1 11521073 11521095 -270672569 + AT_rich Low_complexity Low_complexity 1 22 0 * 1789 149 35 3 chr1 11521096 11521385 -270672279 + AluJb SINE Alu 9 306 -6 2389 99 0 0 chr1 11521388 11521700 -270671964 + AluSx SINE Alu 1 312 0 680 130 36 29 chr1 11521713 11521851 -270671813 + L1MA4 LINE L1 6159 6297 -3 1906 131 25 0 chr1 11521861 11522143 -270671521 + AluSx SINE Alu 12 300 -12 2075 210 78 45 chr1 11522146 11522707 -270670957 + MLT1G1 LTR MaLR 3 582 -13 746 233 85 5 chr1 11523772 11523995 -270669669 + MIR SINE MIR 1 241 -21 302 202 46 92 chr1 11524007 11524116 -270669548 + MIR SINE MIR 31 134 -128 1004 242 43 19 chr1 11524793 11525049 -270668615 + MIR SINE MIR 1 262 0 1906 160 3 10 chr1 11525552 11525858 -270667806 - AluJb SINE Alu -8 304 1 1238 131 4 97 chr1 11525867 11526104 -270667560 - AluJo SINE Alu -12 300 86 740 204 7 0 chr1 11526111 11526253 -270667411 - FLAM_C SINE Alu 0 143 1 431 136 9 0 chr1 11527263 11527349 -270666315 + MER5A DNA MER1_type 6 92 -97 2149 128 0 0 chr1 11528336 11528625 -270665039 - AluSx SINE Alu -23 289 1 1545 144 113 4 chr1 11528635 11528892 -270664772 - AluJb SINE Alu -27 285 1 1305 192 12 16 chr1 11528894 11529144 -270664520 + MER58B DNA MER1_type 43 291 -50 817 260 72 8 chr1 11529485 11529735 -270663929 + L2 LINE L2 2535 2800 -514 782 214 33 28 chr1 11529736 11529840 -270663824 - MER5A DNA MER1_type -1 188 81 1632 187 7 11 chr1 11529840 11530124 -270663540 - AluJo SINE Alu -29 283 1 782 214 33 28 chr1 11530124 11530201 -270663463 - MER5A DNA MER1_type -108 81 6 696 263 214 30 chr1 11530208 11530638 -270663026 + L2 LINE L2 2804 3312 -1 328 297 55 36 chr1 11532151 11532370 -270661294 + L2 LINE L2 2837 3059 -213 1481 140 37 37 chr1 11534858 11535129 -270658535 + AluJo SINE Alu 30 300 -12 485 232 58 7 chr1 11535232 11535387 -270658277 + MIR SINE MIR 100 262 0 2249 64 0 64 chr1 11535854 11536168 -270657496 - AluY SINE Alu -17 294 1 2402 92 0 0 chr1 11536607 11536900 -270656764 + AluSg SINE Alu 1 293 -17 1843 171 3 23 chr1 11537383 11537687 -270655977 + AluJb SINE Alu 1 298 -14 1220 283 83 26 chr1 11537700 11538199 -270655465 + L1MEc LINE L1 414 946 -5259 1936 154 6 31 chr1 11538199 11538518 -270655146 + AluSx SINE Alu 1 311 -1 1220 283 83 26 chr1 11538518 11538548 -270655116 + L1MEc LINE L1 946 973 -5232 315 253 37 36 chr1 11538519 11538727 -270654937 + L1MEc LINE L1 1223 1343 -4862 * 34 0 0 0 chr1 11538827 11538861 -270654803 + AT_rich Low_complexity Low_complexity 1 34 0 1191 133 31 10 chr1 11539137 11539333 -270654331 + MLT1D LTR MaLR 304 503 -2 2213 128 0 0 chr1 11539456 11539752 -270653912 - AluSx SINE Alu -16 296 1 469 250 93 7 chr1 11539956 11540096 -270653568 + L1MC5 LINE L1 6720 6871 -1090 301 74 19 19 chr1 11540154 11540208 -270653456 + (TA)n Simple_repeat Simple_repeat 1 54 0 234 62 167 0 chr1 11540399 11540447 -270653217 - L1MC4a LINE L1 -1188 6620 6565 420 268 6 57 chr1 11540486 11540643 -270653021 + L1MC5 LINE L1 6976 7124 -837 21 26 0 26 chr1 11540643 11540658 -270653006 + AT_rich Low_complexity Low_complexity 1 15 -23 2458 71 0 3 chr1 11540658 11540954 -270652710 - AluY SINE Alu -16 295 1 21 26 0 26 chr1 11540954 11540977 -270652687 + AT_rich Low_complexity Low_complexity 15 38 0 611 162 63 27 chr1 11540977 11541088 -270652576 - FLAM_C SINE Alu -27 116 2 307 143 0 20 chr1 11541155 11541204 -270652460 + MER4E LTR ERV1 645 692 -74 309 232 4 36 chr1 11541221 11541343 -270652321 + L1MC4a LINE L1 7075 7176 -632 * 723 236 151 75 chr1 11541340 11542042 -270651622 + L1MC5 LINE L1 7244 7908 -53 1233 273 93 34 chr1 11542103 11542215 -270651449 + L1MEc LINE L1 2131 2235 -3980 2104 117 7 0 chr1 11542215 11542544 -270651120 + AluSq SINE Alu 1 331 0 1233 273 93 34 chr1 11542544 11543318 -270650346 + L1MEc LINE L1 2235 3028 -3187 1379 201 64 17 chr1 11543319 11543685 -270649979 + L1MB7 LINE L1 5801 6182 -2 234 217 87 0 chr1 11543723 11543792 -270649872 + L1MEc LINE L1 3033 3107 -3108 285 254 182 47 chr1 11543830 11543877 -270649787 + L1MEc LINE L1 3223 3262 -2953 2304 123 0 0 chr1 11543877 11544179 -270649485 - AluSx SINE Alu -10 302 1 285 254 182 47 chr1 11544179 11544406 -270649258 + L1MEc LINE L1 3262 3534 -2681 419 244 102 84 chr1 11544420 11544711 -270648953 + L1MEc LINE L1 3753 4056 -2159 708 159 0 0 chr1 11544711 11544818 -270648846 + U6 snRNA snRNA 1 107 0 419 244 102 84 chr1 11544818 11544965 -270648699 + L1MEc LINE L1 4056 4199 -2016 1518 161 63 35 chr1 11544966 11545252 -270648412 + AluJb SINE Alu 1 294 -18 222 37 0 0 chr1 11545371 11545398 -270648266 + (CCCCCG)n Simple_repeat Simple_repeat 4 30 0 2408 113 0 0 chr1 11545473 11545784 -270647880 + AluSx SINE Alu 1 311 -1 247 311 36 60 chr1 11545925 11546092 -270647572 + L1MC4a LINE L1 6278 6440 -1368 1249 287 33 16 chr1 11546132 11546560 -270647104 + L1MC4 LINE L1 7090 7524 -518 2288 110 0 0 chr1 11546656 11546946 -270646718 - AluSx SINE Alu -22 290 1 1047 144 69 0 chr1 11548276 11548436 -270645228 + AluJb SINE Alu 125 295 -17 436 155 12 0 chr1 11548466 11548550 -270645114 - L1MA6 LINE L1 -216 6084 6000 1819 147 59 7 chr1 11548598 11548884 -270644780 + AluSx SINE Alu 3 303 -9 1440 196 57 4 chr1 11550193 11550473 -270643191 - AluJo SINE Alu -15 297 3 500 184 9 44 chr1 11550744 11550858 -270642806 - L2 LINE L2 -1 3312 3203 2123 123 17 0 chr1 11551050 11551352 -270642312 + AluSx SINE Alu 1 307 -5 905 216 0 0 chr1 11553788 11553955 -270639709 + AluSg/x SINE Alu 128 294 -16 2376 87 0 0 chr1 11554159 11554457 -270639207 + AluSc SINE Alu 1 298 -11 342 224 47 0 chr1 11554469 11554554 -270639110 + L2 LINE L2 3183 3271 -1 1960 155 3 10 chr1 11554587 11554896 -270638768 - AluJb SINE Alu -5 307 1 2262 86 3 10 chr1 11554967 11555268 -270638396 - AluSx SINE Alu -13 299 1 2395 68 0 39 chr1 11557221 11557531 -270636133 - AluY SINE Alu -13 298 1 21 36 0 0 chr1 11557653 11557681 -270635983 + AT_rich Low_complexity Low_complexity 1 28 0 2342 107 7 0 chr1 11558080 11558390 -270635274 + AluSx SINE Alu 1 312 0 234 292 11 22 chr1 11559259 11559348 -270634316 - MIR SINE MIR -84 178 91 478 287 56 46 chr1 11559371 11559498 -270634166 - MIR SINE MIR -10 252 121 2490 63 3 0 chr1 11559498 11559799 -270633865 + AluY SINE Alu 1 302 -9 478 287 56 46 chr1 11559799 11559866 -270633798 - MIR SINE MIR -141 121 56 720 233 39 17 chr1 11560236 11560416 -270633248 + MER91B DNA MER1_type 1 184 -6 1145 74 0 20 chr1 11560539 11560674 -270632990 + AluSq/x SINE Alu 1 134 -178 2032 141 0 6 chr1 11560674 11560986 -270632678 + AluSx SINE Alu 1 310 -2 1145 74 0 20 chr1 11560986 11560998 -270632666 + AluSq/x SINE Alu 134 145 -167 1892 129 26 23 chr1 11561867 11562169 -270631495 + AluJo SINE Alu 1 303 -9 674 191 66 0 chr1 11562335 11562471 -270631193 + FRAM SINE Alu 1 145 -31 2217 109 3 10 chr1 11562471 11562774 -270630890 + AluSp SINE Alu 4 304 -9 2152 95 11 3 chr1 11562808 11563117 -270630547 + AluSx SINE Alu 1 311 0 2142 137 23 6 chr1 11563120 11563462 -270630202 + MER7A DNA MER2_type 1 346 0 1764 156 0 36 chr1 11564074 11564375 -270629289 + AluJo SINE Alu 1 290 -22 356 298 165 0 chr1 11565367 11565555 -270628109 - MIR SINE MIR -12 250 32 2221 109 7 3 chr1 11566987 11567289 -270626375 + AluSq SINE Alu 1 303 -10 2118 102 0 4 chr1 11567401 11567675 -270625989 + AluSg SINE Alu 1 273 -37 257 0 30 0 chr1 11567865 11567898 -270625766 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 6542 53 17 44 chr1 11567898 11568823 -270624841 - SVA Other Other -23 1363 464 2491 230 155 29 chr1 11568823 11570073 -270623591 + L2 LINE L2 1896 3312 -1 818 120 38 38 chr1 11570116 11570249 -270623415 - FLAM_C SINE Alu 0 133 1 209 296 0 0 chr1 11570433 11570477 -270623187 - L2 LINE L2 -19 3294 3251 1214 154 14 5 chr1 11570487 11570695 -270622969 + MER2 DNA MER2_type 2 211 -134 809 150 0 16 chr1 11570767 11570894 -270622770 - AluJb SINE Alu -187 125 1 298 277 31 0 chr1 11570894 11570959 -270622705 + MER2 DNA MER2_type 277 343 -2 416 217 38 9 chr1 11571234 11571340 -270622324 + L2 LINE L2 2519 2627 -687 879 259 185 8 chr1 11571343 11571708 -270621956 + LTR16B LTR ERVL 3 430 -34 609 313 150 7 chr1 11571723 11572248 -270621416 + L2 LINE L2 2625 3238 -75 2326 116 0 0 chr1 11572603 11572897 -270620767 - AluSx SINE Alu -18 294 1 487 250 102 13 chr1 11572902 11573061 -270620603 - MIR SINE MIR -62 146 19 262 226 0 0 chr1 11573164 11573217 -270620447 + HsTC2 DNA Tc2 3 55 -1843 2069 132 4 0 chr1 11573226 11573507 -270620157 - AluJo SINE Alu -16 296 15 2359 117 0 0 chr1 11573560 11573867 -270619797 + AluSc SINE Alu 1 307 -2 273 169 51 0 chr1 11573872 11573931 -270619733 + HsTC2 DNA Tc2 1793 1854 -44 2310 98 20 7 chr1 11574026 11574323 -270619341 + AluSx SINE Alu 1 301 -11 335 336 26 9 chr1 11574875 11574991 -270618673 + L2 LINE L2 3194 3311 -2 292 255 112 41 chr1 11575010 11575108 -270618556 - MIR SINE MIR -107 155 51 2303 89 0 80 chr1 11575711 11576049 -270617615 + AluSx SINE Alu 1 311 -1 2293 102 10 0 chr1 11576285 11576579 -270617085 + AluSq SINE Alu 1 297 -16 212 287 161 0 chr1 11576693 11576780 -270616884 + MIR SINE MIR 42 142 -66 223 234 36 135 chr1 11577233 11577344 -270616320 - L2 LINE L2 -6 3307 3208 1374 138 167 0 chr1 11578150 11578389 -270615275 + AluSx SINE Alu 33 311 -1 532 191 30 23 chr1 11578422 11578553 -270615111 + MIR SINE MIR 123 254 -8 180 111 0 0 chr1 11578553 11578580 -270615084 + (CTA)n Simple_repeat Simple_repeat 1 27 0 1203 155 79 54 chr1 11578695 11578718 -270614946 - MER33 DNA MER1_type -2261 324 303 2327 111 3 0 chr1 11578718 11579025 -270614639 + AluSq SINE Alu 1 308 -5 1203 155 79 54 chr1 11579025 11579248 -270614416 - MER33 DNA MER1_type -2282 303 66 2423 93 0 7 chr1 11579248 11579549 -270614115 - AluSx SINE Alu -13 299 1 1203 155 79 54 chr1 11579549 11579617 -270614047 - MER33 DNA MER1_type -2519 66 1 2113 45 8 34 chr1 11579678 11579945 -270613719 + AluY SINE Alu 38 297 -14 2023 92 9 66 chr1 11581646 11581944 -270611720 + AluSx SINE Alu 1 282 -30 399 41 0 0 chr1 11581944 11581993 -270611671 + (CA)n Simple_repeat Simple_repeat 2 50 0 2023 92 9 66 chr1 11581993 11582011 -270611653 + AluSx SINE Alu 282 299 -13 655 106 106 32 chr1 11582013 11582136 -270611528 + FLAM_C SINE Alu 2 133 0 372 286 66 112 chr1 11582170 11582258 -270611406 + L1ME4a LINE L1 5698 5788 -333 2250 97 0 29 chr1 11582258 11582568 -270611096 + AluSg SINE Alu 5 305 -5 372 286 66 112 chr1 11582568 11582618 -270611046 + L1ME4a LINE L1 5788 5839 -282 1768 162 17 10 chr1 11582618 11582920 -270610744 + AluJo SINE Alu 1 304 -8 372 286 66 112 chr1 11582920 11583067 -270610597 + L1ME4a LINE L1 5839 5971 -150 883 129 0 0 chr1 11583205 11583348 -270610316 + FLAM_C SINE Alu 1 143 0 189 74 0 0 chr1 11583391 11583418 -270610246 + (TTG)n Simple_repeat Simple_repeat 2 28 0 1588 131 62 39 chr1 11583448 11583707 -270609957 + AluJb SINE Alu 30 294 -18 291 28 0 0 chr1 11583708 11583744 -270609920 + (TA)n Simple_repeat Simple_repeat 1 36 0 893 125 0 0 chr1 11583752 11583872 -270609792 - AluSg/x SINE Alu -22 288 169 2448 95 0 0 chr1 11583958 11584262 -270609402 - AluSx SINE Alu -8 304 1 2284 128 0 0 chr1 11584459 11584764 -270608900 - AluSx SINE Alu -7 305 1 631 153 8 32 chr1 11584853 11584977 -270608687 - LTR26 LTR ERV1 -2 601 481 4146 135 21 21 chr1 11584978 11585689 -270607975 - MER50 LTR ERV1 -23 711 1 2343 145 89 39 chr1 11585689 11585733 -270607931 - LTR26 LTR ERV1 -119 484 444 216 0 0 0 chr1 11585733 11585757 -270607907 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2252 111 0 0 chr1 11585759 11586048 -270607616 - AluSg SINE Alu -21 289 1 2343 145 89 39 chr1 11586048 11586423 -270607241 - LTR26 LTR ERV1 -159 444 35 2176 86 48 14 chr1 11586423 11586576 -270607088 - AluSx SINE Alu -12 300 154 1761 132 21 103 chr1 11586576 11586916 -270606748 - AluYb8 SINE Alu -6 312 1 2176 86 48 14 chr1 11586916 11587052 -270606612 - AluSx SINE Alu -158 154 1 2343 145 89 39 chr1 11587052 11587089 -270606575 - LTR26 LTR ERV1 -568 35 1 1010 248 81 26 chr1 11587091 11587401 -270606263 - L1MC4a LINE L1 -1959 5849 5523 1730 61 0 0 chr1 11587542 11587770 -270605894 - L1PA6 LINE L1 0 6154 5927 225 222 0 0 chr1 11587800 11587845 -270605819 - MIR SINE MIR 0 262 218 334 263 31 81 chr1 11587925 11588041 -270605623 + MIR SINE MIR 111 218 -44 2162 109 35 0 chr1 11588041 11588326 -270605338 + AluSx SINE Alu 1 295 -17 334 263 31 81 chr1 11588326 11588369 -270605295 + MIR SINE MIR 218 262 0 276 292 158 0 chr1 11588367 11588487 -270605177 - MIR SINE MIR -75 187 49 * 279 120 8 265 chr1 11588645 11588689 -270604975 + MER45 DNA AcHobo 92 146 -1435 2414 78 3 22 chr1 11588689 11589008 -270604656 - AluSp SINE Alu 0 313 1 279 120 8 265 chr1 11589008 11589028 -270604636 + MER45 DNA AcHobo 146 169 -1412 1604 176 40 50 chr1 11589028 11589203 -270604461 - AluJb SINE Alu -13 299 127 2443 84 3 3 chr1 11589203 11589511 -270604153 - AluY SINE Alu -3 308 1 1604 176 40 50 chr1 11589511 11589637 -270604027 - AluJb SINE Alu -185 127 1 582 182 66 0 chr1 11589637 11589712 -270603952 - FLAM_A SINE Alu -173 129 42 2431 66 0 3 chr1 11589712 11590000 -270603664 + AluY SINE Alu 2 288 -23 582 182 66 0 chr1 11590000 11590045 -270603619 - FLAM_A SINE Alu -260 42 1 279 120 8 265 chr1 11590045 11590095 -270603569 + MER45 DNA AcHobo 167 1581 0 * 1393 190 88 16 chr1 11590095 11590456 -270603208 + MER63C DNA MER1_type 56 442 -488 1334 108 0 0 chr1 11590464 11590640 -270603024 - AluSg/x SINE Alu -3 307 132 2381 92 0 0 chr1 11590640 11590934 -270602730 - AluSx SINE Alu -14 298 5 952 183 105 9 chr1 11590938 11591157 -270602507 + MER63C DNA MER1_type 467 706 -224 268 139 0 0 chr1 11591167 11591210 -270602454 + L2 LINE L2 3230 3272 0 230 144 0 83 chr1 11591408 11591540 -270602124 + (CCCCG)n Simple_repeat Simple_repeat 2 122 0 280 250 30 0 chr1 11591549 11591649 -270602015 + C-rich Low_complexity Low_complexity 1 103 0 2413 82 0 3 chr1 11592744 11593050 -270600614 - AluSc SINE Alu 0 309 5 2349 112 0 0 chr1 11593060 11593365 -270600299 - AluSg SINE Alu -5 305 1 1663 235 85 53 chr1 11593550 11593678 -270599986 - L2 LINE L2 -18 3295 3173 417 212 34 76 chr1 11593678 11593796 -270599868 + MER81 DNA DNA 1 113 -1 1663 235 85 53 chr1 11593796 11593916 -270599748 - L2 LINE L2 -140 3173 3058 1811 135 17 24 chr1 11593916 11594205 -270599459 + AluJo SINE Alu 1 287 -25 1663 235 85 53 chr1 11594205 11594788 -270598876 - L2 LINE L2 -255 3058 2445 2268 124 0 0 chr1 11594839 11595137 -270598527 + AluSx SINE Alu 1 298 -14 2138 140 20 0 chr1 11595413 11595713 -270597951 + AluSx SINE Alu 2 307 -5 1791 114 82 18 chr1 11595751 11596031 -270597633 - AluSx SINE Alu -14 298 1 2233 107 13 0 chr1 11596102 11596401 -270597263 - AluSp SINE Alu -10 303 1 2127 152 0 3 chr1 11596405 11596715 -270596949 - AluSx SINE Alu -3 309 1 2121 137 0 3 chr1 11597322 11597621 -270596043 - AluSg SINE Alu -12 298 1 1174 230 102 49 chr1 11597746 11597872 -270595792 - L2 LINE L2 -849 2465 2347 2253 103 27 0 chr1 11597872 11598173 -270595491 - AluSx SINE Alu -3 309 1 1174 230 102 49 chr1 11598173 11598498 -270595166 - L2 LINE L2 -967 2347 1990 186 291 5 108 chr1 11598532 11598745 -270594919 - L2 LINE L2 -254 3059 2869 2532 243 85 35 chr1 11598815 11599948 -270593716 + L2 LINE L2 2127 3310 -3 234 245 0 0 chr1 11599943 11599996 -270593668 - L2 LINE L2 -554 2760 2708 * 424 232 42 65 chr1 11599999 11600019 -270593645 - L1MA10 LINE L1 -1 6333 6314 2800 158 66 58 chr1 11600019 11600284 -270593380 - L1ME2 LINE L1 -9 6155 5894 189 0 0 0 chr1 11600284 11600305 -270593359 + (TATG)n Simple_repeat Simple_repeat 4 24 0 2800 158 66 58 chr1 11600305 11600765 -270592899 - L1ME2 LINE L1 -270 5894 5433 2224 94 7 23 chr1 11601016 11601323 -270592341 - AluSp SINE Alu -11 302 1 2408 88 0 3 chr1 11601323 11601619 -270592045 - AluSp SINE Alu -18 295 1 419 346 35 35 chr1 11602473 11602730 -270590934 - L2 LINE L2 -43 3229 2973 2141 132 3 0 chr1 11602913 11603217 -270590447 - AluSx SINE Alu -3 309 5 284 239 91 114 chr1 11603226 11603490 -270590174 - L2 LINE L2 -601 2713 2456 2578 66 0 0 chr1 11606106 11606410 -270587254 + AluY SINE Alu 2 305 -6 2084 146 0 13 chr1 11607083 11607392 -270586272 + AluJo SINE Alu 1 305 -7 763 307 96 56 chr1 11607407 11607957 -270585707 + L3 LINE CR1 319 890 -687 1561 144 26 100 chr1 11608013 11608215 -270585449 - AluYb8 SINE Alu -3 315 146 2111 103 0 4 chr1 11608215 11608486 -270585178 - AluSg SINE Alu -39 271 2 1561 144 26 100 chr1 11608486 11608623 -270585041 - AluYb8 SINE Alu -172 146 1 2023 120 58 3 chr1 11609154 11609445 -270584219 + AluSx SINE Alu 1 307 -5 198 310 58 23 chr1 11609518 11609605 -270584059 + L3 LINE CR1 949 1038 -539 312 294 119 8 chr1 11609683 11609783 -270583881 + L3 LINE CR1 380 498 -1079 2253 125 3 0 chr1 11609783 11610087 -270583577 + AluSx SINE Alu 1 305 -7 312 294 119 8 chr1 11610087 11610112 -270583552 + L3 LINE CR1 498 519 -1058 636 249 32 125 chr1 11610311 11610448 -270583216 + L3 LINE CR1 1264 1412 -165 2406 105 0 3 chr1 11610448 11610762 -270582902 - AluSq SINE Alu 0 313 1 636 249 32 125 chr1 11610762 11610969 -270582695 + L3 LINE CR1 1412 1576 -1 408 20 0 0 chr1 11611126 11611175 -270582489 + (CA)n Simple_repeat Simple_repeat 2 50 0 343 216 59 29 chr1 11611895 11611997 -270581667 + L2 LINE L2 3168 3272 0 2278 114 10 0 chr1 11612131 11612430 -270581234 - AluSq SINE Alu -11 302 1 183 227 0 0 chr1 11612473 11612517 -270581147 + L2 LINE L2 3267 3310 -3 716 278 44 10 chr1 11612531 11612736 -270580928 - MIR SINE MIR 0 262 51 697 171 20 48 chr1 11612756 11612902 -270580762 - FLAM_C SINE Alu 0 143 2 351 298 57 8 chr1 11614573 11614697 -270578967 - L2 LINE L2 -19 3294 3165 607 307 33 21 chr1 11614730 11614971 -270578693 + MIR SINE MIR 13 256 -6 2022 144 0 3 chr1 11614986 11615277 -270578387 - AluJb SINE Alu -22 290 1 203 262 0 49 chr1 11615378 11615439 -270578225 + L2 LINE L2 3246 3303 -10 * 442 286 43 0 chr1 11615411 11615551 -270578113 - L2 LINE L2 0 3313 3168 1733 148 41 71 chr1 11615571 11615935 -270577729 + MLT1A1 LTR MaLR 1 353 -12 2262 112 10 0 chr1 11616407 11616711 -270576953 - AluSq SINE Alu -2 311 5 2090 141 3 0 chr1 11616743 11617066 -270576598 + AluSx SINE Alu 1 324 0 2408 98 7 0 chr1 11618256 11618553 -270575111 - AluSx SINE Alu -13 299 1 260 132 0 0 chr1 11618553 11618591 -270575073 - AluJo/FLAM SINE Alu -175 127 90 271 185 19 0 chr1 11618595 11618649 -270575015 - LTR37A LTR ERV1 -354 72 18 2334 95 3 0 chr1 11618669 11618963 -270574701 - AluSx SINE Alu -17 295 1 2149 124 0 19 chr1 11618972 11619287 -270574377 - AluJb SINE Alu -1 311 3 2496 45 3 32 chr1 11619497 11619811 -270573853 - AluY SINE Alu -6 305 1 357 209 10 177 chr1 11619812 11620019 -270573645 - MIR SINE MIR -61 147 8 1349 124 60 5 chr1 11620817 11621018 -270572646 - AluJo SINE Alu -13 299 88 2238 126 0 0 chr1 11621480 11621782 -270571882 - AluSx SINE Alu -10 302 1 1762 154 19 26 chr1 11621934 11622245 -270571419 - AluJo SINE Alu -1 311 3 518 234 36 7 chr1 11622543 11622680 -270570984 - MLT1H LTR MaLR 0 549 409 2340 83 0 3 chr1 11622803 11623105 -270570559 - AluY SINE Alu -9 302 2 9768 43 14 115 chr1 11623537 11625070 -270568594 - SVA Other Other -8 1378 1 424 185 25 25 chr1 11625611 11625773 -270567891 + L1ME3A LINE L1 5942 6165 -5 2192 105 0 19 chr1 11626116 11626429 -270567235 + AluSx SINE Alu 1 307 -5 678 265 32 45 chr1 11626656 11627103 -270566561 + MLT1H LTR MaLR 29 549 0 2559 103 27 11 chr1 11628017 11628386 -270565278 + THE1C LTR MaLR 1 375 0 733 163 257 86 chr1 11628416 11628820 -270564844 + MLT1F LTR MaLR 3 511 -31 197 291 47 79 chr1 11628953 11629231 -270564433 + L2 LINE L2 2826 3094 -178 1859 167 0 3 chr1 11629650 11629950 -270563714 - AluJb SINE Alu -8 304 6 251 317 10 30 chr1 11630433 11630534 -270563130 - MIR SINE MIR -87 121 23 536 149 252 19 chr1 11631245 11631417 -270562247 - MLT1F LTR MaLR -23 567 308 295 202 0 147 chr1 11631450 11631510 -270562154 - MLT1F LTR MaLR -342 225 186 1974 121 10 20 chr1 11631510 11631815 -270561849 - AluJo SINE Alu -10 302 1 295 202 0 147 chr1 11631815 11631863 -270561801 - MLT1F LTR MaLR -381 186 133 854 262 83 4 chr1 11632200 11632429 -270561235 - MIR SINE MIR -11 251 5 673 188 0 23 chr1 11632671 11632707 -270560957 - L1MB3 LINE L1 -7 6176 6141 2393 97 0 0 chr1 11632707 11633018 -270560646 - AluSx SINE Alu -1 311 1 673 188 0 23 chr1 11633018 11633114 -270560550 - L1MB3 LINE L1 -42 6141 6047 180 0 0 0 chr1 11633803 11633823 -270559841 + (CAG)n Simple_repeat Simple_repeat 1 20 0 2487 78 0 0 chr1 11633853 11634162 -270559502 + AluSx SINE Alu 1 309 -3 299 192 13 90 chr1 11634340 11634418 -270559246 - MIR SINE MIR -58 150 86 248 216 118 59 chr1 11634735 11634837 -270558827 - MIR SINE MIR -63 145 38 1824 173 0 16 chr1 11635548 11635861 -270557803 - AluJo SINE Alu 0 312 5 2145 103 0 0 chr1 11635878 11636183 -270557481 - AluSx SINE Alu 0 305 1 294 229 43 0 chr1 11636183 11636253 -270557411 - MIR SINE MIR -70 192 120 793 278 39 0 chr1 11636314 11636519 -270557145 - MIR SINE MIR -25 237 25 332 273 64 35 chr1 11636673 11636786 -270556878 - MLT1K LTR MaLR -4 584 463 2320 55 24 0 chr1 11636786 11637076 -270556588 - AluY SINE Alu -14 297 1 332 273 64 35 chr1 11637076 11637134 -270556530 - MLT1K LTR MaLR -125 463 408 482 257 24 129 chr1 11637178 11637388 -270556276 + MER91A DNA MER1_type 9 196 0 214 175 0 0 chr1 11637517 11637557 -270556107 - L2 LINE L2 -90 3223 3184 243 320 10 29 chr1 11637662 11637765 -270555899 - MLT1K LTR MaLR -346 242 142 371 266 158 14 chr1 11638248 11638387 -270555277 - MIR SINE MIR -5 257 99 662 284 89 91 chr1 11639190 11639358 -270554306 - L2 LINE L2 0 3313 3146 1395 177 3 101 chr1 11639358 11639686 -270553978 + AluSx SINE Alu 1 296 -16 2223 114 0 3 chr1 11639686 11639992 -270553672 + AluSx SINE Alu 1 305 -7 662 284 89 91 chr1 11639992 11640217 -270553447 - L2 LINE L2 -165 3148 2920 198 0 0 0 chr1 11640226 11640248 -270553416 + (TC)n Simple_repeat Simple_repeat 2 23 0 211 291 13 38 chr1 11640275 11640354 -270553310 - L2 LINE L2 -46 3226 3150 2371 81 3 0 chr1 11641022 11641330 -270552334 - AluY SINE Alu -2 309 1 2019 111 11 0 chr1 11641701 11641981 -270551683 - AluSx SINE Alu -29 283 1 234 326 70 0 chr1 11642642 11642728 -270550936 + MIR SINE MIR 58 149 -59 802 133 0 0 chr1 11642734 11642854 -270550810 + FRAM SINE Alu 52 171 -5 465 255 72 20 chr1 11642902 11643055 -270550609 - L2 LINE L2 -189 3083 2923 2063 128 0 19 chr1 11643949 11644261 -270549403 + AluSx SINE Alu 1 306 -6 489 301 49 0 chr1 11644686 11644849 -270548815 + MIR SINE MIR 50 220 -42 206 200 0 0 chr1 11644877 11644912 -270548752 - MIR SINE MIR -163 99 65 1109 117 0 0 chr1 11644935 11645089 -270548575 - AluSx SINE Alu -15 297 144 1189 69 0 0 chr1 11645151 11645296 -270548368 - AluSx SINE Alu -167 145 1 263 314 169 8 chr1 11645330 11645454 -270548210 + MIR SINE MIR 3 146 -116 2248 94 0 28 chr1 11646433 11646752 -270546912 - AluJb SINE Alu -2 310 1 350 239 97 8 chr1 11647916 11648050 -270545614 + L1MC2 LINE L1 6199 6344 0 2281 90 3 0 chr1 11648277 11648577 -270545087 - AluY SINE Alu -10 301 1 189 235 111 12 chr1 11649110 11649191 -270544473 + MIR SINE MIR 16 104 -104 1867 99 24 41 chr1 11649194 11649487 -270544177 + AluSx SINE Alu 25 312 0 326 222 0 0 chr1 11649636 11649708 -270543956 - MIR SINE MIR -22 240 169 251 293 178 26 chr1 11649699 11649890 -270543774 + L2 LINE L2 3056 3275 -38 * 1103 286 99 40 chr1 11650393 11650589 -270543075 + L2 LINE L2 2490 2673 -640 1729 174 0 10 chr1 11650589 11650899 -270542765 + AluJo SINE Alu 1 307 -5 1103 286 99 40 chr1 11650899 11650964 -270542700 + L2 LINE L2 2673 2733 -580 2008 144 0 13 chr1 11650964 11651277 -270542387 + AluJb SINE Alu 1 309 -3 2315 80 3 3 chr1 11651279 11651579 -270542085 + AluSx SINE Alu 3 302 -10 1103 286 99 40 chr1 11651579 11652090 -270541574 + L2 LINE L2 2733 3313 0 2465 55 0 16 chr1 11652487 11652796 -270540868 + AluY SINE Alu 1 304 -7 202 232 0 18 chr1 11653069 11653125 -270540539 + GA-rich Low_complexity Low_complexity 2 56 0 420 326 128 5 chr1 11654238 11654434 -270539230 - MIR SINE MIR -8 254 35 1437 161 92 22 chr1 11654783 11655080 -270538584 + AluJo SINE Alu 1 312 0 203 306 0 42 chr1 11655168 11655240 -270538424 + MIR SINE MIR 145 213 -49 206 271 62 21 chr1 11655526 11655670 -270537994 + (TATATG)n Simple_repeat Simple_repeat 1 150 0 325 328 26 68 chr1 11655670 11655935 -270537729 - L1MCa LINE L1 -4219 2207 1954 924 142 13 0 chr1 11656482 11656709 -270536955 + CT-rich Low_complexity Low_complexity 1 230 0 399 247 0 0 chr1 11656996 11657154 -270536510 + (TG)n Simple_repeat Simple_repeat 1 158 0 2143 104 10 0 chr1 11657435 11657734 -270535930 + AluSx SINE Alu 1 302 -10 400 302 86 36 chr1 11658720 11658942 -270534722 + L3b LINE CR1 1296 1528 -55 569 288 113 0 chr1 11659040 11659217 -270534447 + MIR SINE MIR 62 258 -4 2080 116 20 0 chr1 11659218 11659511 -270534153 + AluSx SINE Alu 1 299 -13 211 274 0 0 chr1 11659524 11659575 -270534089 + MIR SINE MIR 91 141 -121 965 313 85 23 chr1 11659585 11659796 -270533868 - L2 LINE L2 0 3313 3117 1617 163 32 25 chr1 11659796 11660079 -270533585 + AluJb SINE Alu 6 290 -22 965 313 85 23 chr1 11660079 11660302 -270533362 - L2 LINE L2 -196 3117 2852 424 106 0 0 chr1 11660881 11660947 -270532717 - MER117 DNA MER1_type -53 144 79 194 152 0 22 chr1 11661463 11661509 -270532155 + GA-rich Low_complexity Low_complexity 5 49 0 208 206 0 63 chr1 11661691 11661754 -270531910 + MIR SINE MIR 86 144 -118 1907 136 3 23 chr1 11662103 11662405 -270531259 - AluSx SINE Alu -16 296 1 195 274 145 0 chr1 11662841 11662903 -270530761 - L2 LINE L2 -46 3226 3156 494 209 107 19 chr1 11662960 11663213 -270530451 - MER46C DNA MER2_type -21 317 4 783 230 0 17 chr1 11663235 11663413 -270530251 - MIR SINE MIR -38 224 50 293 322 62 62 chr1 11663554 11663731 -270529933 - L2 LINE L2 -182 3090 2914 1874 144 31 0 chr1 11664054 11664346 -270529318 - AluSx SINE Alu -11 301 1 1921 82 0 4 chr1 11665233 11665497 -270528167 - AluSg SINE Alu 0 300 38 186 231 19 19 chr1 11665864 11665916 -270527748 - MIR SINE MIR -148 114 63 761 176 14 9 chr1 11665947 11666169 -270527495 + CT-rich Low_complexity Low_complexity 1 223 0 1964 161 3 0 chr1 11666169 11666479 -270527185 - AluSx SINE Alu -1 311 1 2329 167 68 107 chr1 11666723 11666890 -270526774 - L1MD2 LINE L1 -3 6356 6184 1650 159 26 4 chr1 11666890 11667160 -270526504 + AluJb SINE Alu 2 277 -35 315 0 0 0 chr1 11667161 11667196 -270526468 + (TATG)n Simple_repeat Simple_repeat 2 36 0 2329 167 68 107 chr1 11667196 11667707 -270525957 - L1MD2 LINE L1 -174 6185 5703 2163 120 10 0 chr1 11667986 11668295 -270525369 + AluSx SINE Alu 1 312 0 180 212 0 0 chr1 11668402 11668435 -270525229 + MIR SINE MIR 115 147 -61 1737 150 0 83 chr1 11669420 11669759 -270523905 - AluSx SINE Alu -1 311 1 606 252 79 1 chr1 11669792 11670123 -270523541 - MLT1I LTR MaLR -2 407 20 324 281 27 82 chr1 11670342 11670488 -270523176 + MIR SINE MIR 79 216 -46 487 259 38 8 chr1 11670863 11670994 -270522670 - L2 LINE L2 0 3272 3138 2295 92 0 0 chr1 11671084 11671379 -270522285 - AluSx SINE Alu -17 295 1 645 329 94 16 chr1 11671404 11671784 -270521880 + LTR16A1 LTR ERVL 82 457 0 268 296 10 0 chr1 11671892 11671990 -270521674 + MLT1L LTR MaLR 168 266 -349 1928 151 17 3 chr1 11671993 11672291 -270521373 - AluSx SINE Alu -4 308 7 416 321 79 5 chr1 11672398 11672588 -270521076 + MLT1L LTR MaLR 410 613 -2 187 43 0 0 chr1 11672600 11672623 -270521041 + (TTTTA)n Simple_repeat Simple_repeat 2 180 0 1800 116 56 0 chr1 11672623 11672891 -270520773 - AluSx SINE Alu -29 283 1 2300 81 0 34 chr1 11674986 11675307 -270518357 - AluSx SINE Alu 0 312 3 2047 107 0 28 chr1 11675453 11675770 -270517894 - AluSx SINE Alu 0 309 1 214 317 50 0 chr1 11676548 11676608 -270517056 - MIR SINE MIR -90 172 110 379 333 62 37 chr1 11676653 11676896 -270516768 + MIR SINE MIR 10 258 -4 2141 119 0 0 chr1 11676898 11677193 -270516471 + AluSx SINE Alu 1 295 -17 424 279 25 126 chr1 11678124 11678450 -270515214 - L2 LINE L2 -9 3263 2971 4192 85 13 9 chr1 11678633 11679185 -270514479 - MER41A LTR ERV1 0 554 1 182 309 0 0 chr1 11679631 11679686 -270513978 + MIR SINE MIR 85 139 -69 2181 113 0 0 chr1 11679863 11680163 -270513501 - AluSq SINE Alu -13 300 1 248 219 29 139 chr1 11680625 11680710 -270512954 - MLT1I LTR MaLR -189 220 154 2053 108 3 26 chr1 11680710 11681015 -270512649 - AluSx SINE Alu -14 298 1 248 219 29 139 chr1 11681015 11681066 -270512598 - MLT1I LTR MaLR -255 154 99 183 220 0 0 chr1 11681419 11681469 -270512195 + GA-rich Low_complexity Low_complexity 1 50 0 2281 108 0 0 chr1 11681678 11681985 -270511679 - AluSx SINE Alu -5 307 1 376 324 25 34 chr1 11682064 11682268 -270511396 - LTR16C LTR ERVL -2 489 288 2228 84 7 10 chr1 11682882 11683180 -270510484 + AluSx SINE Alu 1 297 -15 2415 131 34 3 chr1 11683181 11683564 -270510100 + MSTA LTR MaLR 34 428 0 1968 132 0 0 chr1 11683618 11683898 -270509766 + AluSx SINE Alu 1 280 -32 186 43 0 0 chr1 11683923 11683946 -270509718 + (A)n Simple_repeat Simple_repeat 1 23 0 278 233 29 68 chr1 11683947 11684050 -270509614 + MLT1K LTR MaLR 114 212 -178 355 136 15 15 chr1 11684367 11684433 -270509231 + MLT1K LTR MaLR 196 261 -327 711 197 182 23 chr1 11684958 11685053 -270508611 - MER33 DNA MER1_type -2263 322 243 1677 173 14 0 chr1 11685053 11685342 -270508322 - AluSx SINE Alu -19 293 1 711 197 182 23 chr1 11685342 11685510 -270508154 - MER33 DNA MER1_type -2342 243 17 1029 184 84 27 chr1 11685759 11686020 -270507644 - L1MD3 LINE L1 -13 7982 7707 437 218 20 0 chr1 11686093 11686194 -270507470 - L1MA10 LINE L1 -7 6327 6225 1746 154 6 35 chr1 11686300 11686619 -270507045 + AluSx SINE Alu 1 310 -2 1249 209 50 9 chr1 11686714 11687081 -270506583 + MLT1B LTR MaLR 46 390 0 269 227 0 30 chr1 11687083 11687149 -270506515 + MLT1I LTR MaLR 81 144 -265 2347 80 0 0 chr1 11687418 11687717 -270505947 + AluSq SINE Alu 1 299 -14 782 211 6 12 chr1 11687733 11687894 -270505770 - MIR SINE MIR -86 176 17 324 296 47 30 chr1 11687994 11688163 -270505501 + L2 LINE L2 3080 3251 -62 2310 57 0 0 chr1 11688951 11689268 -270504396 - AluY SINE Alu 0 317 1 1115 141 11 0 chr1 11689275 11689452 -270504212 - L1MB4 LINE L1 -2 6178 6000 253 241 11 58 chr1 11689478 11689565 -270504099 + MIR SINE MIR 65 147 -61 2247 112 0 0 chr1 11690089 11690401 -270503263 - AluSx SINE Alu 0 312 1 1845 141 3 13 chr1 11690403 11690707 -270502957 - AluJb SINE Alu -10 302 2 1240 114 0 6 chr1 11690803 11690979 -270502685 - AluSc SINE Alu -10 299 125 195 255 149 0 chr1 11691192 11691286 -270502378 - MIR SINE MIR -111 151 44 693 131 42 14 chr1 11691987 11692432 -270501232 + (TG)n Simple_repeat Simple_repeat 1 457 0 578 24 97 18 chr1 11692450 11692615 -270501049 + (TG)n Simple_repeat Simple_repeat 2 179 0 500 64 81 27 chr1 11692653 11692908 -270500756 + (GTGTG)n Simple_repeat Simple_repeat 1 268 0 2144 113 3 0 chr1 11693462 11693763 -270499901 - AluSg SINE Alu -8 302 1 459 322 35 0 chr1 11693769 11693940 -270499724 - MIR SINE MIR -51 211 35 2344 84 13 0 chr1 11694659 11694967 -270498697 - AluSx SINE Alu 0 312 1 374 250 52 0 chr1 11695009 11695125 -270498539 + MER103 DNA DNA 13 134 -32 996 206 83 29 chr1 11695697 11695974 -270497690 + MLT1J2 LTR MaLR 4 295 -155 1454 205 13 3 chr1 11695995 11696293 -270497371 - AluJo SINE Alu -11 301 1 644 212 32 0 chr1 11696308 11696463 -270497201 + MIR SINE MIR 35 192 -62 493 297 16 0 chr1 11696471 11696599 -270497065 + LTR16A LTR ERVL 229 358 -92 428 318 99 0 chr1 11696705 11696897 -270496767 + HERV16 LTR ERVL 79 289 -4707 766 172 0 16 chr1 11696897 11697025 -270496639 + FLAM_C SINE Alu 1 126 -7 476 168 9 75 chr1 11697070 11697177 -270496487 + MER20 DNA MER1_type 49 148 -71 1089 73 0 0 chr1 11697177 11697313 -270496351 + AluSq/x SINE Alu 1 136 -176 2107 119 0 3 chr1 11697314 11697616 -270496048 + AluSx SINE Alu 3 303 -9 304 137 20 0 chr1 11697620 11697671 -270495993 + MER20 DNA MER1_type 154 205 -14 1044 166 0 0 chr1 11697671 11697840 -270495824 + AluJb SINE Alu 144 312 0 2195 291 63 26 chr1 11697874 11698681 -270494983 + HERV16 LTR ERVL 307 1082 -4291 1715 130 23 33 chr1 11698681 11698980 -270494684 + AluJb SINE Alu 1 296 -16 2195 291 63 26 chr1 11698980 11699394 -270494270 + HERV16 LTR ERVL 1082 1479 -3894 2125 103 3 0 chr1 11699394 11699684 -270493980 - AluSp SINE Alu -21 292 2 2195 291 63 26 chr1 11699684 11699960 -270493704 + HERV16 LTR ERVL 1479 1954 -3419 1109 61 0 0 chr1 11699981 11700113 -270493551 + AluY SINE Alu 1 132 -179 2392 73 0 0 chr1 11700116 11700416 -270493248 + AluY SINE Alu 1 300 -11 1622 320 29 61 chr1 11700433 11700904 -270492760 + HERV16 LTR ERVL 1964 2404 -2592 2195 128 0 0 chr1 11700904 11701216 -270492448 - AluSx SINE Alu 0 312 1 1622 320 29 61 chr1 11701216 11701482 -270492182 + HERV16 LTR ERVL 2404 2677 -2319 1179 133 11 0 chr1 11701496 11701676 -270491988 + MER20 DNA MER1_type 37 218 -1 1740 149 35 0 chr1 11701730 11702019 -270491645 - AluJo SINE Alu -13 299 1 1331 319 23 18 chr1 11702045 11702653 -270491011 + HERV16 LTR ERVL 2712 3344 -2310 1294 349 15 36 chr1 11702734 11703402 -270490262 + ERVL LTR ERVL 4729 5382 -382 780 318 23 19 chr1 11703547 11703811 -270489853 + LTR16A LTR ERVL 16 280 -170 2429 172 80 54 chr1 11755140 11755675 -270437989 - MLT2B3 LTR ERVL 0 554 6 303 336 52 9 chr1 11755706 11755822 -270437842 + MIR SINE MIR 92 212 -50 952 260 23 24 chr1 11756030 11756281 -270437383 - MIR SINE MIR 0 262 8 2221 154 137 0 chr1 11756392 11756794 -270436870 + MSTB2 LTR MaLR 1 457 0 282 270 63 54 chr1 11756840 11756951 -270436713 + MIR SINE MIR 20 131 -131 409 291 0 0 chr1 11756982 11757068 -270436596 + MER5A DNA MER1_type 9 94 -95 237 278 105 53 chr1 11757118 11757251 -270436413 + L2 LINE L2 3174 3313 0 1202 300 65 40 chr1 11757721 11758702 -270434962 - L1MEc LINE L1 -4576 1820 815 1549 176 7 21 chr1 11758702 11758981 -270434683 - AluJo SINE Alu -3 309 35 208 344 0 0 chr1 11759744 11759805 -270433859 + L2 LINE L2 3209 3269 -3 538 197 49 8 chr1 11759923 11760045 -270433619 - L1MA10 LINE L1 -3 6331 6205 1690 176 17 3 chr1 11760047 11760342 -270433322 + AluJo SINE Alu 1 299 -13 3712 217 67 28 chr1 11760342 11760551 -270433113 - L1MEc LINE L1 -2763 3452 3253 1485 123 28 16 chr1 11760551 11760804 -270432860 - L1MA1 LINE L1 0 6302 6047 3712 217 67 28 chr1 11760804 11761736 -270431928 - L1MEc LINE L1 -2962 3253 2241 2073 95 7 4 chr1 11761736 11762032 -270431632 + AluY SINE Alu 11 307 0 3712 217 67 28 chr1 11762032 11762597 -270431067 - L1MEc LINE L1 -3974 2241 1700 1816 154 13 32 chr1 11762597 11762708 -270430956 + AluJo SINE Alu 1 113 -199 2623 95 3 14 chr1 11762708 11763067 -270430597 - THE1A LTR MaLR 0 355 1 12276 82 2 10 chr1 11763067 11764659 -270429005 - THE1A-int LTR MaLR 0 1580 1 2787 64 3 11 chr1 11764659 11765017 -270428647 - THE1A LTR MaLR 0 355 1 1816 154 13 32 chr1 11765017 11765214 -270428450 + AluJo SINE Alu 110 305 -7 730 255 87 31 chr1 11765214 11765595 -270428069 - L1MEc LINE L1 -4688 1708 1307 520 215 249 24 chr1 11765629 11765834 -270427830 - L1MEc LINE L1 -6143 253 3 27 0 0 0 chr1 11765856 11765883 -270427781 + AT_rich Low_complexity Low_complexity 1 27 0 845 205 35 6 chr1 11766021 11766192 -270427472 - MER5B DNA MER1_type 0 178 3 192 193 119 110 chr1 11766532 11766641 -270427023 - MIR3 SINE MIR -15 193 84 333 236 191 11 chr1 11766927 11767016 -270426648 - L2 LINE L2 0 3272 3168 430 264 23 16 chr1 11768347 11768476 -270425188 - MIR SINE MIR -70 192 63 291 202 191 11 chr1 11768721 11768810 -270424854 + MIR SINE MIR 33 137 -71 254 296 49 0 chr1 11769055 11769136 -270424528 - L2 LINE L2 0 3272 3188 758 273 32 14 chr1 11769696 11769916 -270423748 - MIR SINE MIR -32 230 7 338 303 43 62 chr1 11770308 11770470 -270423194 + MER91B DNA MER1_type 18 176 -14 404 289 28 85 chr1 11770539 11770750 -270422914 + MIR SINE MIR 37 235 -27 452 330 86 9 chr1 11772026 11772247 -270421417 + MIR SINE MIR 25 262 0 246 325 130 43 chr1 11772903 11773318 -270420346 - L2 LINE L2 -5 3267 2817 * 256 177 0 91 chr1 11773309 11773485 -270420179 + G-rich Low_complexity Low_complexity 1 159 0 238 145 16 65 chr1 11773498 11773560 -270420104 + G-rich Low_complexity Low_complexity 1 59 0 201 74 0 0 chr1 11773572 11773599 -270420065 + (GGAGA)n Simple_repeat Simple_repeat 1 27 0 330 325 212 0 chr1 11773743 11774026 -270419638 - L2 LINE L2 -526 2788 2446 431 142 0 87 chr1 11774447 11774896 -270418768 + (CAGCC)n Simple_repeat Simple_repeat 1 410 0 220 259 176 0 chr1 11775030 11775115 -270418549 + MIR SINE MIR 89 188 -74 217 222 60 54 chr1 11775360 11775527 -270418137 + (CAGAG)n Simple_repeat Simple_repeat 3 170 0 333 307 6 28 chr1 11776492 11776671 -270416993 + C-rich Low_complexity Low_complexity 3 177 0 357 339 11 11 chr1 11776708 11776885 -270416779 + C-rich Low_complexity Low_complexity 3 179 0 729 235 75 5 chr1 11777383 11777583 -270416081 + MIR SINE MIR 13 226 -36 1284 124 4 68 chr1 11777700 11777934 -270415730 - AluJo SINE Alu -7 305 87 577 301 170 16 chr1 11778038 11778350 -270415314 + L2 LINE L2 2912 3271 -1 1991 117 31 14 chr1 11778852 11779142 -270414522 - AluSx SINE Alu -17 295 1 2184 99 13 0 chr1 11779178 11779482 -270414182 + AluY SINE Alu 1 308 -3 804 349 101 9 chr1 11779570 11779997 -270413667 + L2 LINE L2 2848 3313 0 184 273 93 93 chr1 11780012 11780151 -270413513 + L2 LINE L2 3119 3257 -56 399 275 158 0 chr1 11780337 11780508 -270413156 - L2 LINE L2 -1 3312 3115 305 311 66 0 chr1 11781170 11781292 -270412372 - MIR3 SINE MIR -49 159 30 452 248 16 47 chr1 11783687 11783816 -270409848 - MIR SINE MIR -118 144 20 237 287 126 0 chr1 11784209 11784296 -270409368 + MIR SINE MIR 44 141 -67 1639 164 48 48 chr1 11784550 11784602 -270409062 - L1MB3 LINE L1 0 6183 6132 183 42 0 0 chr1 11784602 11784626 -270409038 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1959 104 14 28 chr1 11784626 11784913 -270408751 - AluSx SINE Alu -29 283 1 1639 164 48 48 chr1 11784913 11785157 -270408507 - L1MB3 LINE L1 -50 6133 5883 2331 88 7 3 chr1 11785157 11785464 -270408200 - AluSx SINE Alu -4 308 1 1639 164 48 48 chr1 11785464 11785544 -270408120 - L1MB3 LINE L1 -299 5884 5805 422 323 82 43 chr1 11785791 11786070 -270407594 - L2 LINE L2 -75 3197 2908 418 278 57 17 chr1 11786691 11786867 -270406797 - MIR SINE MIR -1 261 79 225 308 19 47 chr1 11787734 11787841 -270405823 + MIR3 SINE MIR 105 208 0 232 308 94 8 chr1 11788921 11789038 -270404626 - MIR SINE MIR -75 187 61 1260 248 72 19 chr1 11790063 11790491 -270403173 - MLT1C LTR MaLR -1 466 16 408 339 121 0 chr1 11790497 11790671 -270402993 - MIR SINE MIR -56 206 12 1489 170 59 4 chr1 11791240 11791510 -270402154 + AluSx SINE Alu 1 285 -27 219 36 0 0 chr1 11791519 11791547 -270402117 + (TAA)n Simple_repeat Simple_repeat 1 28 0 211 229 181 24 chr1 11791725 11791808 -270401856 - MIR SINE MIR -59 203 108 185 377 35 9 chr1 11792527 11792641 -270401023 - MIR SINE MIR -62 146 30 654 332 53 11 chr1 11792675 11792986 -270400678 + L1MC/D LINE L1 5414 5730 -693 204 277 0 0 chr1 11793184 11793231 -270400433 + GA-rich Low_complexity Low_complexity 3 49 0 231 345 108 7 chr1 11793552 11793700 -270399964 + MIR SINE MIR 59 221 -41 234 342 118 58 chr1 11794256 11794619 -270399045 + L2 LINE L2 2811 3195 -77 188 254 211 0 chr1 11795182 11795253 -270398411 - MIR SINE MIR -90 118 33 423 284 37 15 chr1 11795408 11795542 -270398122 - MIR SINE MIR -70 192 56 195 220 40 0 chr1 11795685 11795735 -270397929 + MIR SINE MIR 70 121 -141 698 261 76 33 chr1 11795738 11796068 -270397596 - MLT1H LTR MaLR -1 548 205 2099 127 0 13 chr1 11796109 11796424 -270397240 + AluSx SINE Alu 1 311 -1 21 0 0 0 chr1 11796425 11796446 -270397218 + AT_rich Low_complexity Low_complexity 1 21 0 1210 219 62 78 chr1 11796448 11796569 -270397095 + MLT1C LTR MaLR 36 157 -310 1886 173 19 73 chr1 11796569 11796979 -270396685 + MLT1B LTR MaLR 3 390 0 1210 219 62 78 chr1 11796979 11797295 -270396369 + MLT1C LTR MaLR 157 466 -1 630 262 84 5 chr1 11797295 11797486 -270396178 - MLT1H LTR MaLR -342 207 2 206 318 146 0 chr1 11797491 11797601 -270396063 + MIR SINE MIR 123 248 -14 214 274 151 0 chr1 11797633 11797706 -270395958 + L2 LINE L2 3168 3251 -21 889 231 0 0 chr1 11799267 11799440 -270394224 + AluJo SINE Alu 122 294 -18 525 144 22 44 chr1 11799448 11799629 -270394035 + (CAGAGA)n Simple_repeat Simple_repeat 2 178 0 2333 79 0 29 chr1 11799993 11800309 -270393355 - AluY SINE Alu -4 307 1 1933 140 20 3 chr1 11800311 11800604 -270393060 - AluJo SINE Alu -14 298 1 1777 218 93 29 chr1 11801031 11801540 -270392124 + L1ME3 LINE L1 5548 6100 -62 2502 50 0 0 chr1 11801540 11801839 -270391825 - AluY SINE Alu -12 299 1 1777 218 93 29 chr1 11801839 11801907 -270391757 + L1ME3 LINE L1 6100 6162 0 2070 102 11 0 chr1 11801907 11802192 -270391472 - AluSx SINE Alu -24 288 1 1127 288 81 34 chr1 11803256 11803652 -270390012 - L2 LINE L2 0 3313 2839 1797 174 0 7 chr1 11803652 11803951 -270389713 + AluJo SINE Alu 1 297 -15 1127 288 81 34 chr1 11803951 11804100 -270389564 - L2 LINE L2 -474 2839 2699 1541 208 40 103 chr1 11804132 11804657 -270389007 + MLT2B1 LTR ERVL 27 518 -2 313 216 80 0 chr1 11804660 11804748 -270388916 - L2 LINE L2 -629 2685 2591 2992 164 25 4 chr1 11805297 11805773 -270387891 - MER66B LTR ERV1 0 486 1 340 397 43 5 chr1 11805833 11806017 -270387647 + MIR3 SINE MIR 13 203 -5 290 321 207 0 chr1 11806817 11806957 -270386707 - MIR SINE MIR -24 238 70 514 308 104 23 chr1 11807304 11807603 -270386061 - MLT1K LTR MaLR -128 460 138 307 115 0 0 chr1 11807656 11807708 -270385956 + MLT1G LTR MaLR 12 63 -532 694 149 104 52 chr1 11807725 11807879 -270385785 + MER70B LTR ERVL 1 162 -416 * 1634 218 52 8 chr1 11807875 11808242 -270385422 + MER70A LTR ERVL 90 472 0 341 315 11 11 chr1 11808242 11808405 -270385259 + MLT1G LTR MaLR 79 241 -308 686 219 25 6 chr1 11808422 11808582 -270385082 + MLT1G LTR MaLR 426 588 -2 276 30 0 0 chr1 11808584 11808617 -270385047 + (TG)n Simple_repeat Simple_repeat 1 33 0 604 324 49 0 chr1 11809307 11809511 -270384153 + MIR SINE MIR 4 217 -45 262 167 21 0 chr1 11811151 11811199 -270382465 + L2 LINE L2 3265 3313 0 208 385 83 0 chr1 11811300 11811409 -270382255 - L2 LINE L2 0 3272 3155 273 29 0 0 chr1 11811919 11811953 -270381711 + (CA)n Simple_repeat Simple_repeat 1 34 0 243 294 156 0 chr1 11812577 11812686 -270380978 + MIR3 SINE MIR 35 160 -48 758 186 8 0 chr1 11813628 11813752 -270379912 + AluJo SINE Alu 1 125 -187 737 135 8 0 chr1 11813754 11813880 -270379784 + GA-rich Low_complexity Low_complexity 1 127 0 789 175 88 29 chr1 11813893 11814064 -270379600 + AluJo SINE Alu 120 300 -12 1345 165 0 56 chr1 11814074 11814290 -270379374 + L1M4 LINE L1 4961 5155 -991 2097 106 33 0 chr1 11814290 11814592 -270379072 + AluSx SINE Alu 1 312 0 1345 165 0 56 chr1 11814592 11814696 -270378968 + L1M4 LINE L1 5155 5263 -883 588 259 90 21 chr1 11814717 11814906 -270378758 + MIR SINE MIR 50 251 -11 189 244 58 58 chr1 11815157 11815243 -270378421 - MER5B DNA MER1_type -65 113 28 354 317 11 27 chr1 11815865 11816048 -270377616 + L1ME4a LINE L1 5733 5912 -209 1494 147 88 28 chr1 11816055 11816268 -270377396 + AluJo SINE Alu 6 242 -70 2461 178 38 23 chr1 11816268 11816747 -270376917 + MER66B LTR ERV1 1 486 0 1494 147 88 28 chr1 11816747 11816818 -270376846 + AluJo SINE Alu 242 307 -5 417 211 48 78 chr1 11816852 11817018 -270376646 + L1ME4a LINE L1 5960 6120 -1 1535 228 78 42 chr1 11817593 11818044 -270375620 + MLT1C LTR MaLR 1 467 0 489 269 17 0 chr1 11818073 11818192 -270375472 - MIR SINE MIR -95 167 47 459 355 39 0 chr1 11818263 11818418 -270375246 + MIR SINE MIR 48 208 -54 515 270 40 3 chr1 11819288 11819439 -270374225 - MIR SINE MIR -62 146 30 1059 206 0 5 chr1 11819526 11819730 -270373934 + MER58A DNA MER1_type 22 224 0 194 425 45 0 chr1 11819733 11819867 -270373797 + MIR SINE MIR 113 252 -10 2251 86 16 3 chr1 11819872 11820175 -270373489 - AluY SINE Alu -4 307 1 2168 116 0 0 chr1 11820422 11820723 -270372941 - AluSq SINE Alu -12 301 1 600 259 6 36 chr1 11821091 11821257 -270372407 + MER91B DNA MER1_type 4 164 -26 260 325 12 0 chr1 11821265 11821345 -270372319 - L2 LINE L2 -54 3259 3179 611 212 42 12 chr1 11821940 11822113 -270371551 + MIR SINE MIR 1 176 -44 200 35 35 0 chr1 11822555 11822584 -270371080 + (CA)n Simple_repeat Simple_repeat 2 31 0 277 226 60 24 chr1 11823048 11823132 -270370532 + MLT1K LTR MaLR 473 559 -29 263 220 0 0 chr1 11823135 11823185 -270370479 + MER117 DNA MER1_type 44 93 -104 707 299 0 6 chr1 11823340 11823517 -270370147 + MIR SINE MIR 2 177 -85 201 237 0 0 chr1 11823622 11823681 -270369983 + (CA)n Simple_repeat Simple_repeat 1 59 0 289 107 89 0 chr1 11823692 11823748 -270369916 + MLT2C2 LTR ERVL 364 424 -40 257 289 0 13 chr1 11823748 11823824 -270369840 + (CATA)n Simple_repeat Simple_repeat 2 76 0 269 140 0 35 chr1 11823826 11823883 -270369781 + MLT2B1 LTR ERVL 466 520 0 390 280 223 24 chr1 11824626 11824837 -270368827 - MIR SINE MIR -8 254 2 256 166 0 9 chr1 11825009 11825066 -270368598 - MLT2C2 LTR ERVL 0 464 422 224 241 0 19 chr1 11825082 11825136 -270368528 + (TATATG)n Simple_repeat Simple_repeat 4 56 0 2387 149 30 9 chr1 11825136 11825560 -270368104 - MLT2C2 LTR ERVL -40 480 1 1708 144 2 138 chr1 11826172 11826352 -270367312 + MLT1B LTR MaLR 8 211 -179 1895 158 0 0 chr1 11826352 11826643 -270367021 + AluJb SINE Alu 1 291 -21 1708 144 2 138 chr1 11826643 11826791 -270366873 + MLT1B LTR MaLR 211 263 -127 2032 107 12 55 chr1 11826791 11827117 -270366547 - AluSx SINE Alu 0 312 1 1708 144 2 138 chr1 11827117 11827230 -270366434 + MLT1B LTR MaLR 263 390 0 935 248 16 29 chr1 11827537 11827680 -270365984 + MIR SINE MIR 20 160 -102 3796 52 2 0 chr1 11827680 11828123 -270365541 - MLT2A1 LTR ERVL 0 444 1 935 248 16 29 chr1 11828123 11828225 -270365439 + MIR SINE MIR 160 262 0 429 262 116 77 chr1 11828428 11828686 -270364978 + L2 LINE L2 2437 2684 -630 1547 141 43 50 chr1 11828686 11828785 -270364879 + AluJb SINE Alu 1 99 -213 2061 92 3 7 chr1 11828785 11829104 -270364560 + AluSq SINE Alu 1 318 0 1547 141 43 50 chr1 11829104 11829280 -270364384 + AluJb SINE Alu 99 275 -37 192 40 0 0 chr1 11829281 11829306 -270364358 + (TCTCTG)n Simple_repeat Simple_repeat 2 26 0 326 23 23 0 chr1 11829307 11829350 -270364314 + (CA)n Simple_repeat Simple_repeat 1 44 0 429 262 116 77 chr1 11829350 11829423 -270364241 + L2 LINE L2 2683 2785 -529 802 261 89 43 chr1 11829467 11829838 -270363826 + L2 LINE L2 2926 3313 0 1895 141 17 0 chr1 11830509 11830806 -270362858 + AluSx SINE Alu 2 303 -9 580 311 49 0 chr1 11830882 11831065 -270362599 + MIR SINE MIR 13 204 -58 200 172 17 0 chr1 11831065 11831123 -270362541 + (TA)n Simple_repeat Simple_repeat 2 60 0 468 318 40 6 chr1 11831660 11831833 -270361831 + MIR SINE MIR 9 187 -75 2377 121 5 39 chr1 11831914 11832302 -270361362 - THE1C LTR MaLR 0 375 1 825 248 41 11 chr1 11832409 11832679 -270360985 + LTR16C LTR ERVL 214 491 0 844 168 0 0 chr1 11832791 11832922 -270360742 + FLAM_A SINE Alu 1 131 -2 2380 167 39 9 chr1 11833451 11833888 -270359776 + MER66B LTR ERV1 27 476 -10 498 291 62 59 chr1 11834135 11834206 -270359458 + L1ME4a LINE L1 5456 5525 -596 2191 114 0 0 chr1 11834206 11834503 -270359161 - AluSg SINE Alu -13 297 1 498 291 62 59 chr1 11834503 11834919 -270358745 + L1ME4a LINE L1 5525 5944 -177 245 149 0 43 chr1 11835114 11835161 -270358503 + MLT1J LTR MaLR 91 135 -376 1517 160 132 7 chr1 11835192 11835514 -270358150 + MLT1A2 LTR MaLR 1 390 0 405 173 198 0 chr1 11836298 11836379 -270357285 + FLAM_A SINE Alu 10 106 -36 1663 151 3 25 chr1 11836596 11836913 -270356751 + MER33 DNA MER1_type 2 311 -13 464 14 55 0 chr1 11837038 11837111 -270356553 + (TTTTTG)n Simple_repeat Simple_repeat 2 78 0 190 343 27 0 chr1 11837646 11837719 -270355945 + MER5A DNA MER1_type 74 148 -41 381 275 62 67 chr1 11838166 11838344 -270355320 - MIR SINE MIR -70 192 16 527 296 77 6 chr1 11838959 11839128 -270354536 - MIR3 SINE MIR -19 189 9 1070 252 73 69 chr1 11839150 11839569 -270354095 + MLT1H1 LTR MaLR 7 429 -126 2889 111 21 12 chr1 11839569 11839993 -270353671 + MSTA LTR MaLR 1 428 0 1070 252 73 69 chr1 11839993 11840121 -270353543 + MLT1H1 LTR MaLR 429 555 0 2231 111 0 6 chr1 11840295 11840610 -270353054 - AluSp SINE Alu 0 313 1 247 350 133 0 chr1 11840617 11840737 -270352927 - L2 LINE L2 -1 3271 3136 1621 178 7 0 chr1 11841003 11841278 -270352386 + AluJo SINE Alu 10 286 -26 459 264 0 0 chr1 11842311 11842421 -270351243 - L2 LINE L2 -1 3312 3203 702 314 109 21 chr1 11842455 11842793 -270350871 + MLT1J2 LTR MaLR 33 400 -50 1560 226 206 28 chr1 11842822 11842861 -270350803 + MLT1G1 LTR MaLR 1 32 -563 2164 125 0 0 chr1 11842861 11843172 -270350492 + AluSx SINE Alu 1 311 -1 1560 226 206 28 chr1 11843172 11843316 -270350348 + MLT1G1 LTR MaLR 32 149 -446 1769 208 38 58 chr1 11843316 11843768 -270349896 + LTR47B LTR ERVL 1 443 0 1560 226 206 28 chr1 11843768 11844088 -270349576 + MLT1G1 LTR MaLR 149 595 0 717 279 69 26 chr1 11844154 11844387 -270349277 - MIR SINE MIR 0 262 20 252 0 0 0 chr1 11844423 11844451 -270349213 + (CAA)n Simple_repeat Simple_repeat 2 29 0 24 67 0 0 chr1 11844509 11844554 -270349110 + AT_rich Low_complexity Low_complexity 1 45 0 731 211 128 15 chr1 11844597 11844801 -270348863 + MIR SINE MIR 31 257 -5 471 231 18 2 chr1 11845447 11845583 -270348081 + MIR SINE MIR 17 156 -62 803 304 143 11 chr1 11846745 11847094 -270346570 + L2 LINE L2 2919 3313 0 313 270 165 0 chr1 11847112 11847227 -270346437 - L2 LINE L2 -1 3271 3138 489 335 179 58 chr1 11847286 11847663 -270346001 + L2 LINE L2 2238 2568 -745 1472 165 13 0 chr1 11847663 11847900 -270345764 - AluJo SINE Alu -47 265 26 489 335 179 58 chr1 11847900 11847923 -270345741 + L2 LINE L2 2568 2587 -726 1922 93 0 45 chr1 11847923 11848262 -270345402 - AluSx SINE Alu 0 332 7 489 335 179 58 chr1 11848262 11848589 -270345075 + L2 LINE L2 2587 3058 -255 2076 131 3 6 chr1 11848891 11849204 -270344460 - AluSx SINE Alu 0 312 1 537 174 0 0 chr1 11849350 11849448 -270344216 + FLAM_A SINE Alu 44 141 -1 1156 210 48 12 chr1 11850176 11850428 -270343236 + MIR SINE MIR 2 262 0 459 261 23 15 chr1 11851137 11851267 -270342397 - MIR SINE MIR -58 150 20 524 254 62 40 chr1 11851395 11851572 -270342092 + MIR3 SINE MIR 5 185 -23 314 326 11 0 chr1 11851587 11851682 -270341982 - MIR3 SINE MIR -51 157 62 1616 188 0 13 chr1 11853399 11853697 -270339967 + AluJb SINE Alu 12 305 -7 456 282 67 55 chr1 11854000 11854255 -270339409 - L2 LINE L2 -1 3271 3014 210 265 20 39 chr1 11854541 11854643 -270339021 + (CCCCAG)n Simple_repeat Simple_repeat 3 102 0 313 343 0 37 chr1 11854956 11855090 -270338574 - MIR SINE MIR -128 134 6 550 345 31 31 chr1 11855101 11855391 -270338273 - MER102b DNA MER1_type -10 331 42 262 116 0 0 chr1 11855406 11855449 -270338215 - L2 LINE L2 -4 3309 3267 363 184 0 122 chr1 11855449 11855510 -270338154 - MER81 DNA DNA 0 114 68 2033 124 3 3 chr1 11855510 11855808 -270337856 + AluSx SINE Alu 1 298 -14 363 184 0 122 chr1 11855808 11855844 -270337820 - MER81 DNA DNA -46 68 29 313 317 21 83 chr1 11855847 11856087 -270337577 - L2 LINE L2 -41 3231 3007 510 281 35 25 chr1 11856120 11856319 -270337345 + L1MC5 LINE L1 5650 5850 -1958 1512 171 21 21 chr1 11856320 11856464 -270337200 - AluJo SINE Alu -32 280 134 2092 121 0 7 chr1 11856464 11856761 -270336903 - AluSq SINE Alu -18 295 1 1512 171 21 21 chr1 11856761 11856896 -270336768 - AluJo SINE Alu -177 135 1 905 214 90 0 chr1 11857121 11857322 -270336342 - MER20 DNA MER1_type 0 219 1 1159 88 0 0 chr1 11857454 11857613 -270336051 + AluSc SINE Alu 150 308 -1 658 268 53 13 chr1 11857613 11857841 -270335823 + L1MC5 LINE L1 7260 7496 -465 485 244 29 29 chr1 11858002 11858207 -270335457 + L1MC5 LINE L1 7587 7791 -170 369 347 52 19 chr1 11858283 11858554 -270335110 - L2 LINE L2 -338 2976 2697 1755 160 45 0 chr1 11858562 11858850 -270334814 + AluJo SINE Alu 1 301 -11 1832 212 17 29 chr1 11858856 11859226 -270334438 + L1MB7 LINE L1 5766 6132 -52 2186 105 10 0 chr1 11859226 11859522 -270334142 + AluSx SINE Alu 1 299 -13 1832 212 17 29 chr1 11859522 11859570 -270334094 + L1MB7 LINE L1 6132 6179 -5 2039 120 27 0 chr1 11859573 11859874 -270333790 + AluSx SINE Alu 1 309 -3 437 295 51 19 chr1 11860315 11860471 -270333193 + MLT1I LTR MaLR 210 370 -39 4029 128 99 88 chr1 11860478 11861831 -270331833 + pTR5 LTR ERV1 74 2438 0 251 250 15 15 chr1 11862690 11862758 -270330906 + C-rich Low_complexity Low_complexity 2 69 0 455 319 101 5 chr1 11863055 11863243 -270330421 + MIR SINE MIR 57 262 0 421 215 61 100 chr1 11863323 11863493 -270330171 + MIR SINE MIR 10 173 -63 586 264 275 26 chr1 11863557 11864012 -270329652 - MLT1K LTR MaLR -6 582 15 457 319 45 33 chr1 11864392 11864697 -270328967 + MLT1L LTR MaLR 248 592 -23 1910 187 18 45 chr1 11864799 11864951 -270328713 - MLT2D LTR ERVL 0 520 365 2650 93 11 11 chr1 11864951 11865315 -270328349 + THE1B LTR MaLR 1 364 0 1910 187 18 45 chr1 11865315 11865609 -270328055 - MLT2D LTR ERVL -155 365 2 419 257 50 14 chr1 11865618 11865758 -270327906 - MIR3 SINE MIR -43 165 21 760 192 62 13 chr1 11866174 11866398 -270327266 - MER113 DNA MER1_type? -286 235 1 185 194 0 113 chr1 11866407 11866469 -270327195 - L3b LINE CR1 -225 1358 1304 1761 152 0 23 chr1 11867504 11867807 -270325857 + AluJb SINE Alu 1 296 -16 341 292 9 35 chr1 11867809 11867922 -270325742 - MIR SINE MIR -106 156 47 518 290 93 0 chr1 11868408 11868591 -270325073 - MIR SINE MIR 0 262 63 489 258 50 13 chr1 11868673 11868832 -270324832 - MIR SINE MIR -90 172 8 207 234 0 31 chr1 11869111 11869175 -270324489 - MIR SINE MIR -63 145 84 272 300 83 17 chr1 11869565 11869712 -270323952 - MER5B DNA MER1_type -2 187 42 535 296 58 37 chr1 11869772 11869961 -270323703 - MIR3 SINE MIR -11 197 5 303 130 0 0 chr1 11870162 11870216 -270323448 + (CA)n Simple_repeat Simple_repeat 2 55 0 1033 280 84 36 chr1 11870219 11870298 -270323366 + MLT1K LTR MaLR 146 220 -368 2186 110 0 3 chr1 11870298 11870598 -270323066 + AluSx SINE Alu 1 299 -13 1033 280 84 36 chr1 11870598 11870936 -270322728 + MLT1K LTR MaLR 220 583 -5 195 274 164 0 chr1 11871087 11871160 -270322504 + MIR SINE MIR 30 114 -94 2541 179 50 29 chr1 11871163 11871622 -270322042 + MER74A LTR ERVL 3 476 -82 2427 78 0 0 chr1 11871622 11871930 -270321734 - AluSq SINE Alu -5 308 1 2541 179 50 29 chr1 11871930 11871988 -270321676 + MER74A LTR ERVL 476 531 -27 319 267 9 57 chr1 11872118 11872223 -270321441 - MIR SINE MIR -109 153 54 420 252 8 47 chr1 11872931 11873058 -270320606 - MIR SINE MIR -15 247 126 404 279 29 22 chr1 11873060 11873196 -270320468 + Charlie8 DNA MER1_type 139 275 -2142 375 210 12 0 chr1 11873425 11873506 -270320158 - MIR3 SINE MIR -17 191 110 195 262 0 0 chr1 11873602 11873653 -270320011 - MIR SINE MIR -96 166 116 262 292 87 36 chr1 11873926 11874083 -270319581 - MIR3 SINE MIR -63 145 5 218 162 27 0 chr1 11874279 11874316 -270319348 + MER91 DNA MER1_type 1 38 -152 227 283 0 0 chr1 11875034 11875087 -270318577 + MIR SINE MIR 48 100 -162 359 329 62 71 chr1 11875170 11875376 -270318288 - L2 LINE L2 -19 3253 3050 2099 101 42 0 chr1 11875376 11875663 -270318001 - AluSq SINE Alu -14 299 1 359 329 62 71 chr1 11875663 11875793 -270317871 - L2 LINE L2 -222 3050 2920 1756 151 14 14 chr1 11875825 11876109 -270317555 - AluJb SINE Alu -24 288 5 460 164 151 20 chr1 11876206 11876358 -270317306 - MER69 DNA AcHobo -203 2323 2152 974 177 0 61 chr1 11876362 11876543 -270317121 + AluJb SINE Alu 125 294 -18 303 186 0 34 chr1 11876543 11876602 -270317062 - L1MC4 LINE L1 -1346 6696 6640 299 225 98 70 chr1 11876608 11876647 -270317017 - MER69 DNA AcHobo -376 2150 2114 210 37 0 0 chr1 11876647 11876674 -270316990 + (CA)n Simple_repeat Simple_repeat 2 28 0 299 225 98 70 chr1 11876674 11876712 -270316952 - MER69 DNA AcHobo -412 2114 2079 1708 245 80 15 chr1 11876712 11876893 -270316771 + MLT1D LTR MaLR 1 169 -336 2089 127 17 0 chr1 11876893 11877192 -270316472 + AluSx SINE Alu 1 304 -8 1708 245 80 15 chr1 11877192 11877484 -270316180 + MLT1D LTR MaLR 169 505 0 299 225 98 70 chr1 11877484 11877526 -270316138 - MER69 DNA AcHobo -447 2079 718 603 192 6 72 chr1 11877533 11877700 -270315964 - MER69 DNA AcHobo -2328 198 43 333 191 0 101 chr1 11878778 11878834 -270314830 + L1ME4a LINE L1 6042 6087 -34 2102 120 3 3 chr1 11878834 11879133 -270314531 - AluSq SINE Alu -14 299 1 333 191 0 101 chr1 11879133 11879165 -270314499 + L1ME4a LINE L1 6087 6121 0 1917 134 0 0 chr1 11879531 11879807 -270313857 + AluSx SINE Alu 21 296 -16 189 310 216 6 chr1 11879834 11879950 -270313714 - L2 LINE L2 -102 3211 3121 2348 75 0 7 chr1 11879950 11880256 -270313408 + AluY SINE Alu 3 306 -5 189 310 216 6 chr1 11880256 11880310 -270313354 - L2 LINE L2 -192 3121 3005 321 306 65 0 chr1 11880777 11880885 -270312779 + MER63 DNA MER1_type 1 741 -321 243 273 0 0 chr1 11880881 11880936 -270312728 + MER63 DNA MER1_type 687 741 -95 * 424 282 0 0 chr1 11880932 11881035 -270312629 + MER63 DNA MER1_type 686 788 -273 396 261 18 27 chr1 11881439 11881550 -270312114 + L2 LINE L2 3161 3270 -2 1506 202 6 26 chr1 11882373 11882685 -270310979 - AluJb SINE Alu -6 306 1 307 140 0 0 chr1 11882700 11882750 -270310914 + L2 LINE L2 3264 3313 0 748 114 8 15 chr1 11883756 11883888 -270309776 + (GAAA)n Simple_repeat Simple_repeat 4 134 0 181 160 20 20 chr1 11883892 11883942 -270309722 + G-rich Low_complexity Low_complexity 2 51 0 * 1055 70 5 48 chr1 11883941 11884016 -270309648 + (GGAA)n Simple_repeat Simple_repeat 2 79 -101 1818 131 52 0 chr1 11884016 11884322 -270309342 + AluSx SINE Alu 1 320 0 1055 70 5 48 chr1 11884322 11884432 -270309232 + (GGAA)n Simple_repeat Simple_repeat 79 180 0 506 279 96 10 chr1 11884450 11884647 -270309017 - MIR SINE MIR -15 247 34 566 237 58 0 chr1 11884995 11885134 -270308530 + MIR SINE MIR 2 148 -114 2055 113 0 7 chr1 11885134 11885417 -270308247 + AluSx SINE Alu 1 281 -31 2189 118 0 0 chr1 11885457 11885754 -270307910 - AluSx SINE Alu -15 297 1 247 171 0 0 chr1 11885837 11885878 -270307786 + L2 LINE L2 3220 3260 -12 381 264 69 125 chr1 11885912 11886200 -270307464 - L2 LINE L2 -77 3195 2924 499 306 73 10 chr1 11887027 11887158 -270306506 + MIR SINE MIR 29 179 -83 1959 63 47 0 chr1 11887158 11887412 -270306252 + AluY SINE Alu 1 266 -45 499 306 73 10 chr1 11887412 11887486 -270306178 + MIR SINE MIR 179 247 -15 2570 39 0 3 chr1 11887550 11887857 -270305807 - AluY SINE Alu -5 306 1 1118 94 0 0 chr1 11888694 11888843 -270304821 + AluSg/x SINE Alu 145 293 -17 480 293 92 44 chr1 11889752 11890001 -270303663 + MLT1K LTR MaLR 315 575 -13 355 282 87 27 chr1 11890005 11890154 -270303510 - MIR SINE MIR -89 173 16 277 273 0 0 chr1 11890231 11890286 -270303378 + MIR SINE MIR 70 124 -84 264 77 0 0 chr1 11890820 11890859 -270302805 + (T)n Simple_repeat Simple_repeat 1 39 0 203 318 54 31 chr1 11891169 11891298 -270302366 + L2 LINE L2 2994 3125 -147 756 226 115 14 chr1 11891331 11891548 -270302116 - MIR SINE MIR -5 257 19 2208 115 3 0 chr1 11891636 11891940 -270301724 + AluSx SINE Alu 1 305 -7 505 303 69 16 chr1 11892173 11892361 -270301303 + MIR SINE MIR 56 253 -9 201 108 0 0 chr1 11892413 11892450 -270301214 + (A)n Simple_repeat Simple_repeat 1 37 0 203 268 0 36 chr1 11892658 11892714 -270300950 - L2 LINE L2 -1 3271 3218 370 283 48 11 chr1 11892747 11892909 -270300755 + MIR SINE MIR 36 200 -62 2103 103 13 7 chr1 11893142 11893442 -270300222 - AluSx SINE Alu -10 302 1 2223 95 3 0 chr1 11894636 11894931 -270298733 + AluSc SINE Alu 1 296 -13 950 74 0 0 chr1 11895240 11895361 -270298303 + AluSg/x SINE Alu 183 303 -9 223 404 11 11 chr1 11895482 11895576 -270298088 + MIR SINE MIR 42 135 -73 216 214 0 0 chr1 11895655 11895711 -270297953 + (CAT)n Simple_repeat Simple_repeat 3 58 0 570 298 93 31 chr1 11895894 11896092 -270297572 + L2 LINE L2 2812 3031 -282 2080 126 0 7 chr1 11896092 11896393 -270297271 + AluSx SINE Alu 1 299 -13 570 298 93 31 chr1 11896393 11896452 -270297212 + L2 LINE L2 3031 3085 -228 2241 105 0 16 chr1 11896508 11896823 -270296841 + AluSx SINE Alu 2 311 -1 333 250 0 0 chr1 11896823 11896891 -270296773 + MIR SINE MIR 59 126 -136 288 77 0 0 chr1 11896893 11896932 -270296732 + (T)n Simple_repeat Simple_repeat 1 39 0 982 118 0 14 chr1 11896957 11897101 -270296563 - AluSq/x SINE Alu -171 142 1 359 281 67 22 chr1 11897101 11897236 -270296428 + MIR SINE MIR 121 261 -1 262 209 291 9 chr1 11897241 11897351 -270296313 + L2 LINE L2 3156 3296 -17 1959 137 7 0 chr1 11897370 11897655 -270296009 + AluJo SINE Alu 1 287 -25 29 0 0 0 chr1 11897655 11897684 -270295980 + AT_rich Low_complexity Low_complexity 1 29 0 242 333 13 0 chr1 11897784 11897859 -270295805 - L3 LINE CR1 -196 1381 1306 269 272 22 33 chr1 11897865 11897957 -270295707 + MIR SINE MIR 1 91 -171 203 333 95 0 chr1 11898985 11899069 -270294595 + L2 LINE L2 3137 3228 -44 200 315 65 11 chr1 11899121 11899213 -270294451 + L2 LINE L2 3175 3271 -1 490 218 49 35 chr1 11900289 11900431 -270293233 - L2 LINE L2 0 3313 3170 231 61 0 0 chr1 11900880 11900913 -270292751 + (CAGCC)n Simple_repeat Simple_repeat 1 33 0 239 289 36 0 chr1 11901248 11901331 -270292333 - MIR SINE MIR -85 177 92 182 150 25 0 chr1 11901437 11901477 -270292187 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 204 268 0 0 chr1 11902642 11902713 -270290951 + CT-rich Low_complexity Low_complexity 1 71 0 256 326 141 16 chr1 11903119 11903303 -270290361 + L2 LINE L2 3027 3233 -39 921 272 34 8 chr1 11903323 11903562 -270290102 - MIR SINE MIR -6 256 12 1745 88 65 54 chr1 11903614 11903908 -270289756 - AluSx SINE Alu -15 297 1 759 180 0 8 chr1 11903911 11904039 -270289625 - AluJo/FLAM SINE Alu -175 127 1 245 304 43 11 chr1 11904048 11904140 -270289524 - MIR SINE MIR -66 142 48 261 186 0 34 chr1 11904286 11904345 -270289319 + MIR SINE MIR 103 159 -103 287 325 73 0 chr1 11904858 11904981 -270288683 - MIR SINE MIR -64 198 67 195 75 19 57 chr1 11906372 11906425 -270287239 + (CCCCG)n Simple_repeat Simple_repeat 1 51 0 22 0 0 0 chr1 11906729 11906751 -270286913 + GC_rich Low_complexity Low_complexity 1 22 0 198 71 0 0 chr1 11906867 11906895 -270286769 + (TGGGGG)n Simple_repeat Simple_repeat 2 29 0 196 267 99 30 chr1 11907122 11907223 -270286441 + MIR3 SINE MIR 6 113 -95 491 228 88 15 chr1 11907772 11907908 -270285756 - MIR SINE MIR -10 252 107 1033 123 116 0 chr1 11907928 11908083 -270285581 - AluSg/x SINE Alu -6 306 134 2341 74 0 3 chr1 11908083 11908381 -270285283 - AluSx SINE Alu -15 297 1 183 282 73 73 chr1 11908399 11908523 -270285141 - MIR SINE MIR -109 153 30 395 239 65 7 chr1 11908786 11908924 -270284740 + MER58C DNA MER1_type 69 214 -1 565 222 16 8 chr1 11908932 11909058 -270284606 - MIR SINE MIR -62 146 20 2100 124 3 3 chr1 11909076 11909382 -270284282 + AluSx SINE Alu 1 306 -6 250 242 77 22 chr1 11909382 11909473 -270284191 + MER58C DNA MER1_type 81 176 -39 486 259 37 7 chr1 11909503 11909638 -270284026 - MIR3 SINE MIR -50 158 20 341 306 134 13 chr1 11910540 11910697 -270282967 + MIR SINE MIR 33 208 -54 2225 83 33 0 chr1 11910724 11911026 -270282638 + AluSp SINE Alu 1 312 -1 207 0 0 0 chr1 11911101 11911124 -270282540 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1505 128 88 36 chr1 11911140 11911414 -270282250 - AluJo SINE Alu -24 288 1 960 180 58 24 chr1 11911417 11911623 -270282041 - MER58A DNA MER1_type -9 215 3 726 219 9 43 chr1 11911622 11911773 -270281891 + MER3 DNA MER1_type 1 145 -64 * 2225 89 10 0 chr1 11911773 11912077 -270281587 - AluSx SINE Alu -4 308 2 726 219 9 43 chr1 11912077 11912135 -270281529 + MER3 DNA MER1_type 145 203 -6 345 342 0 17 chr1 11912162 11912279 -270281385 - MIR SINE MIR -69 193 79 1468 182 33 23 chr1 11912399 11912701 -270280963 - AluJo SINE Alu -7 305 1 202 222 0 0 chr1 11914267 11914303 -270279361 + MIR SINE MIR 205 240 -22 1669 115 70 80 chr1 11914304 11914563 -270279101 + THE1C LTR MaLR 1 256 -119 2432 80 0 6 chr1 11914563 11914875 -270278789 - AluY SINE Alu 0 311 2 1669 115 70 80 chr1 11914875 11914989 -270278675 + THE1C LTR MaLR 256 370 -5 229 204 19 0 chr1 11915153 11915207 -270278457 - MER91A DNA MER1_type -138 58 4 1882 114 21 7 chr1 11915285 11915566 -270278098 - AluSx SINE Alu -17 295 11 200 197 0 66 chr1 11915888 11915949 -270277715 + G-rich Low_complexity Low_complexity 5 61 0 198 0 0 0 chr1 11916661 11916683 -270276981 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 1249 132 5 20 chr1 11916683 11916831 -270276833 - AluJb SINE Alu -32 280 131 2154 67 20 91 chr1 11916831 11917173 -270276491 - AluYb8 SINE Alu 0 318 1 2309 89 0 0 chr1 11917173 11917477 -270276187 - AluSg SINE Alu -6 304 1 1249 132 5 20 chr1 11917477 11917524 -270276140 - AluJb SINE Alu -179 133 87 500 138 23 0 chr1 11917647 11917734 -270275930 - AluJ/FRAM SINE Alu 0 312 224 802 215 12 17 chr1 11917812 11917984 -270275680 - AluJo SINE Alu -56 256 86 2236 104 0 7 chr1 11917991 11918300 -270275364 - AluSg SINE Alu -3 307 1 2128 94 10 39 chr1 11918484 11918792 -270274872 + AluSq SINE Alu 1 299 -14 202 146 49 0 chr1 11919156 11919197 -270274467 - MIR SINE MIR -179 83 41 2372 83 0 0 chr1 11919429 11919729 -270273935 + AluY SINE Alu 1 300 -11 1022 153 6 0 chr1 11920020 11920183 -270273481 - FRAM SINE Alu -16 160 1 334 275 163 58 chr1 11920590 11920807 -270272857 + L2 LINE L2 2909 3170 -143 1981 116 10 10 chr1 11920807 11921101 -270272563 + AluSp SINE Alu 6 299 -14 334 275 163 58 chr1 11921101 11921196 -270272468 + L2 LINE L2 3170 3254 -59 377 274 0 26 chr1 11921227 11921350 -270272314 - L1MCa LINE L1 -1339 6983 1996 222 37 0 0 chr1 11921352 11921379 -270272285 + (CA)n Simple_repeat Simple_repeat 2 28 0 1328 94 6 0 chr1 11921379 11921549 -270272115 - AluSq SINE Alu -137 176 6 2382 64 0 3 chr1 11921549 11921846 -270271818 + AluY SINE Alu 2 297 -14 29 28 0 0 chr1 11922220 11922256 -270271408 + AT_rich Low_complexity Low_complexity 1 36 0 817 99 0 0 chr1 11922263 11922374 -270271290 - FLAM_C SINE Alu -32 111 1 190 271 0 57 chr1 11923811 11923881 -270269783 - MIR SINE MIR -80 182 117 2174 104 0 10 chr1 11923909 11924207 -270269457 - AluSx SINE Alu -17 295 1 227 279 0 0 chr1 11924313 11924374 -270269290 - L2 LINE L2 -4 3309 3249 2399 77 0 0 chr1 11925640 11925951 -270267713 + AluY SINE Alu 1 311 0 356 290 59 53 chr1 11927888 11928057 -270265607 + MER5B DNA MER1_type 6 175 -3 217 281 67 0 chr1 11928057 11928145 -270265519 - MIR SINE MIR -79 129 36 266 244 73 24 chr1 11928220 11928302 -270265362 + MIR SINE MIR 35 120 -88 2252 91 3 0 chr1 11929395 11929691 -270263973 + AluSg SINE Alu 1 297 -13 2105 120 13 0 chr1 11929750 11930049 -270263615 + AluSx SINE Alu 1 303 -9 302 274 60 0 chr1 11930213 11930297 -270263367 + MIR3 SINE MIR 73 161 -47 1155 177 57 11 chr1 11930324 11930513 -270263151 - Tigger5 DNA MER2_type -1 2322 2116 2141 83 0 0 chr1 11930513 11930820 -270262844 + AluSx SINE Alu 15 312 0 1155 177 57 11 chr1 11930820 11930895 -270262769 - Tigger5 DNA MER2_type -207 2116 2046 199 236 55 0 chr1 11930939 11930994 -270262670 - L2 LINE L2 -17 3255 3198 2162 99 0 7 chr1 11931151 11931444 -270262220 - AluSg SINE Alu -19 291 1 2546 58 0 0 chr1 11931603 11931913 -270261751 - AluSq SINE Alu -3 310 1 22 56 0 0 chr1 11932126 11932162 -270261502 + GC_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr1 11932685 11932707 -270260957 + GC_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr1 11933217 11933238 -270260426 + AT_rich Low_complexity Low_complexity 1 21 0 547 313 35 15 chr1 11933342 11933543 -270260121 - MIR SINE MIR 0 262 58 370 247 195 13 chr1 11933648 11933802 -270259862 - MIR SINE MIR 0 262 81 213 319 223 0 chr1 11933852 11933946 -270259718 - MIR3 SINE MIR -46 162 48 268 308 118 47 chr1 11934171 11934340 -270259324 + MER5A DNA MER1_type 7 187 -2 1318 88 0 84 chr1 11935044 11935282 -270258382 + L1PB2 LINE L1 5901 6118 -33 2270 76 3 17 chr1 11935303 11935605 -270258059 + AluSp SINE Alu 1 298 -15 193 284 189 0 chr1 11935712 11935786 -270257878 + MIR3 SINE MIR 117 204 -4 227 260 115 39 chr1 11936467 11936529 -270257135 + L2 LINE L2 3161 3236 -36 1939 151 0 22 chr1 11936529 11936848 -270256816 - AluJo SINE Alu 0 312 1 227 260 115 39 chr1 11936848 11936889 -270256775 + L2 LINE L2 3236 3272 0 423 203 112 87 chr1 11937116 11937293 -270256371 + MIR SINE MIR 47 217 -45 1870 164 17 0 chr1 11937293 11937591 -270256073 + AluJb SINE Alu 2 304 -8 423 203 112 87 chr1 11937591 11937635 -270256029 + MIR SINE MIR 217 258 -4 1343 164 134 11 chr1 11938058 11938320 -270255344 - AluSx SINE Alu -8 294 1 1329 199 66 68 chr1 11938442 11938673 -270254991 - L1MB7 LINE L1 -5 6179 5948 1954 142 3 22 chr1 11938673 11938850 -270254814 - AluJo SINE Alu -2 310 140 2046 141 0 0 chr1 11938850 11939155 -270254509 - AluSx SINE Alu -5 307 3 1954 142 3 22 chr1 11939155 11939293 -270254371 - AluJo SINE Alu -172 140 1 1329 199 66 68 chr1 11939293 11939502 -270254162 - L1MB7 LINE L1 -236 5948 5740 234 65 0 0 chr1 11939523 11939554 -270254110 - MIR SINE MIR -62 146 116 1431 244 135 24 chr1 11939772 11939895 -270253769 + L2 LINE L2 2567 2675 -638 2165 106 0 3 chr1 11939895 11940196 -270253468 + AluSx SINE Alu 1 300 -12 1431 244 135 24 chr1 11940196 11940301 -270253363 + L2 LINE L2 2675 2767 -546 3899 100 14 45 chr1 11940301 11940631 -270253033 + MER41A LTR ERV1 1 340 -214 1952 142 13 3 chr1 11940631 11940933 -270252731 + AluSx SINE Alu 1 305 -7 2138 102 14 0 chr1 11940933 11941227 -270252437 + AluSx SINE Alu 1 298 -14 3899 100 14 45 chr1 11941227 11941467 -270252197 + MER41A LTR ERV1 338 554 0 1431 244 135 24 chr1 11941467 11941909 -270251755 + L2 LINE L2 2767 3311 -2 276 53 0 0 chr1 11942541 11942579 -270251085 + (TG)n Simple_repeat Simple_repeat 2 39 0 27 49 0 0 chr1 11943179 11943220 -270250444 + GC_rich Low_complexity Low_complexity 1 41 0 236 247 0 26 chr1 11943245 11943323 -270250341 + C-rich Low_complexity Low_complexity 1 75 0 364 280 20 10 chr1 11944422 11944522 -270249142 + MIR SINE MIR 85 185 -77 195 42 0 0 chr1 11944561 11944585 -270249079 + (GGGGA)n Simple_repeat Simple_repeat 3 26 0 212 240 0 20 chr1 11945816 11945866 -270247798 + L2 LINE L2 3262 3310 -3 231 312 14 0 chr1 11946113 11946195 -270247469 + MIR SINE MIR 37 120 -88 297 274 35 31 chr1 11946746 11946867 -270246797 + MIR3 SINE MIR 9 129 -102 1897 123 0 73 chr1 11946914 11947230 -270246434 + AluSx SINE Alu 1 293 -19 2294 83 7 0 chr1 11947923 11948224 -270245440 + AluSq SINE Alu 1 303 -10 1858 113 0 32 chr1 11948224 11948505 -270245159 + AluSc SINE Alu 33 306 -3 1191 143 0 0 chr1 11948505 11948680 -270244984 + AluSg/x SINE Alu 135 309 -3 331 191 16 0 chr1 11948710 11948773 -270244891 - MIR SINE MIR -120 142 79 193 333 0 0 chr1 11949045 11949105 -270244559 + L2 LINE L2 3132 3191 -81 1567 172 10 17 chr1 11950190 11950487 -270243177 + AluJb SINE Alu 2 296 -16 688 152 0 56 chr1 11951095 11951220 -270242444 - FLAM_A SINE Alu 0 142 25 2118 100 4 0 chr1 11951263 11951576 -270242088 + AluSx SINE Alu 1 314 0 2086 114 24 0 chr1 11951576 11951873 -270241791 + AluSg SINE Alu 3 306 -4 28 0 0 0 chr1 11952172 11952200 -270241464 + AT_rich Low_complexity Low_complexity 1 28 0 257 305 25 70 chr1 11952890 11953058 -270240606 + MIR SINE MIR 32 192 -67 218 261 9 0 chr1 11953674 11953785 -270239879 + (CA)n Simple_repeat Simple_repeat 1 112 0 429 221 10 10 chr1 11953804 11954100 -270239564 + (CA)n Simple_repeat Simple_repeat 1 296 0 229 243 12 18 chr1 11954154 11954323 -270239341 + (CA)n Simple_repeat Simple_repeat 1 168 0 2127 107 20 0 chr1 11954362 11954660 -270239004 - AluSx SINE Alu -8 304 1 398 292 94 64 chr1 11954714 11955239 -270238425 - L2 LINE L2 -27 3245 2712 483 292 106 6 chr1 11957233 11957394 -270236270 + MIR SINE MIR 68 244 -18 1035 166 46 37 chr1 11957574 11957791 -270235873 - MER20 DNA MER1_type 0 219 1 2200 70 42 0 chr1 11958549 11958836 -270234828 + AluY SINE Alu 1 299 -12 225 224 0 0 chr1 11958866 11958915 -270234749 - L3b LINE CR1 -197 1386 1338 522 262 110 31 chr1 11958981 11959172 -270234492 + MIR SINE MIR 12 217 -45 186 316 42 21 chr1 11959850 11959945 -270233719 + MIR3 SINE MIR 1 97 -111 1824 122 4 0 chr1 11959947 11960202 -270233462 + AluSx SINE Alu 1 256 -56 642 358 10 0 chr1 11960205 11960406 -270233258 + MIR SINE MIR 48 250 -12 212 135 0 0 chr1 11960529 11960566 -270233098 + L2 LINE L2 3019 3055 -217 220 278 222 0 chr1 11961104 11961230 -270232434 - MIR3 SINE MIR -21 187 34 273 308 7 35 chr1 11961508 11961522 -270232142 + L1MC4 LINE L1 7895 7908 -134 2290 100 0 0 chr1 11961522 11961823 -270231841 + AluSg SINE Alu 1 301 -9 1885 157 0 10 chr1 11961827 11962127 -270231537 + AluJb SINE Alu 1 297 -15 273 308 7 35 chr1 11962127 11962250 -270231414 + L1MC4 LINE L1 7911 8033 -9 2197 79 3 30 chr1 11962250 11962553 -270231111 + AluY SINE Alu 1 295 -16 1006 59 7 30 chr1 11962623 11962758 -270230906 + AluSq/x SINE Alu 1 132 -180 2032 114 0 13 chr1 11964234 11964533 -270229131 + AluSq SINE Alu 1 295 -18 2305 86 7 0 chr1 11964537 11964829 -270228835 + AluSp SINE Alu 3 296 -17 291 248 205 0 chr1 11964848 11964965 -270228699 - MIR SINE MIR -120 142 2 1681 148 0 74 chr1 11965224 11965376 -270228288 + AluJo SINE Alu 1 118 -194 2053 102 51 0 chr1 11965376 11965669 -270227995 + AluSg1 SINE Alu 1 308 -1 1681 148 0 74 chr1 11965669 11965840 -270227824 + AluJo SINE Alu 118 300 -12 340 240 13 0 chr1 11966344 11966419 -270227245 + MIR3 SINE MIR 112 187 -21 469 252 102 7 chr1 11967330 11967477 -270226187 - MIR SINE MIR -32 230 70 528 210 30 0 chr1 11967493 11967593 -270226071 - AluSg/x SINE Alu -15 295 193 198 231 141 13 chr1 12017834 12017912 -270175752 + MIR SINE MIR 58 145 -63 1273 110 0 0 chr1 12018070 12018243 -270175421 + AluSg/x SINE Alu 134 306 -6 457 247 31 86 chr1 12018259 12018421 -270175243 + MER5B DNA MER1_type 9 161 -17 238 315 0 0 chr1 12018737 12018826 -270174838 + G-rich Low_complexity Low_complexity 3 91 0 690 284 127 4 chr1 12019247 12019476 -270174188 + MIR SINE MIR 5 261 -1 226 339 71 9 chr1 12019473 12019585 -270174079 + MIR SINE MIR 5 123 -139 * 807 205 41 0 chr1 12020001 12020172 -270173492 + MLT1F1 LTR MaLR 390 567 0 549 252 52 7 chr1 12020401 12020559 -270173105 + MIR SINE MIR 9 167 -62 2226 90 20 0 chr1 12020924 12021224 -270172440 - AluSx SINE Alu -6 306 1 388 283 43 7 chr1 12021238 12021376 -270172288 - MLT1E LTR MaLR -431 162 20 390 261 62 71 chr1 12021408 12021555 -270172109 - Charlie8 DNA MER1_type -2150 267 121 2347 82 0 0 chr1 12021555 12021858 -270171806 + AluY SINE Alu 1 303 -8 390 261 62 71 chr1 12021858 12021921 -270171743 - Charlie8 DNA MER1_type -2296 121 59 2164 110 10 3 chr1 12022565 12022873 -270170791 + AluSx SINE Alu 1 310 -2 2426 71 3 0 chr1 12023165 12023473 -270170191 - AluSp SINE Alu -4 309 1 2138 121 10 0 chr1 12023773 12024071 -270169593 - AluSq SINE Alu -12 301 1 2120 110 7 13 chr1 12025639 12025949 -270167715 - AluSx SINE Alu -4 308 1 366 260 87 19 chr1 12025956 12026060 -270167604 - L1ME4a LINE L1 0 6121 6011 1790 149 13 23 chr1 12026344 12026653 -270167011 - AluJo SINE Alu -3 309 4 281 264 28 14 chr1 12028369 12028441 -270165223 + MER5A DNA MER1_type 85 157 -32 234 156 0 0 chr1 12030810 12030855 -270162809 + (CA)n Simple_repeat Simple_repeat 2 46 0 182 319 91 54 chr1 12031504 12031802 -270161862 + L2 LINE L2 2550 2858 -456 495 272 106 56 chr1 12031828 12032148 -270161516 + L2 LINE L2 2932 3267 -5 255 340 70 0 chr1 12032725 12032825 -270160839 - MIR SINE MIR -131 131 25 291 224 267 0 chr1 12032922 12033038 -270160626 - MIR SINE MIR -22 240 94 2295 101 0 0 chr1 12033051 12033358 -270160306 - AluSg SINE Alu -3 307 1 1915 128 0 0 chr1 12033362 12033643 -270160021 - AluJb SINE Alu -1 311 31 626 186 119 0 chr1 12035428 12035546 -270158118 - FLAM_A SINE Alu -1 132 1 357 313 22 44 chr1 12035654 12035836 -270157828 + MER5B DNA MER1_type 1 178 0 324 333 94 38 chr1 12036616 12036829 -270156835 + L3 LINE CR1 1006 1238 -339 2227 107 10 0 chr1 12036829 12037138 -270156526 + AluSq SINE Alu 1 312 -1 324 333 94 38 chr1 12037138 12037191 -270156473 + L3 LINE CR1 1238 1287 -290 1663 156 3 62 chr1 12037205 12037525 -270156139 - AluJo SINE Alu -11 301 1 190 233 0 0 chr1 12037542 12037585 -270156079 + L3 LINE CR1 1286 1328 -249 260 314 0 12 chr1 12037664 12037750 -270155914 + L3 LINE CR1 1486 1570 -7 651 157 165 0 chr1 12038193 12038308 -270155356 - AluJo SINE Alu -177 135 2 2252 93 0 10 chr1 12038641 12038954 -270154710 - AluSg SINE Alu 0 310 1 2173 107 0 0 chr1 12039543 12039842 -270153822 - AluSx SINE Alu -11 301 3 549 246 15 8 chr1 12041410 12041544 -270152120 + MIR SINE MIR 34 168 -94 2204 109 7 0 chr1 12041557 12041860 -270151804 + AluSx SINE Alu 2 306 -6 184 276 0 35 chr1 12041908 12041966 -270151698 + L2 LINE L2 3200 3255 -17 741 117 0 0 chr1 12043992 12044095 -270149569 + FLAM_A SINE Alu 29 131 -11 2221 95 0 0 chr1 12044095 12044391 -270149273 + AluSq SINE Alu 18 313 0 196 353 86 9 chr1 12045067 12045183 -270148481 + L2 LINE L2 3098 3222 -50 366 352 86 21 chr1 12047641 12047874 -270145790 - L1ME4a LINE L1 -59 6062 5815 244 316 39 39 chr1 12047957 12048112 -270145552 - L1MC5 LINE L1 -32 7929 7775 513 32 0 0 chr1 12048122 12048185 -270145479 + (TG)n Simple_repeat Simple_repeat 2 64 0 663 203 15 0 chr1 12048185 12048307 -270145357 - AluJo SINE Alu -184 128 2 829 223 94 30 chr1 12048310 12048705 -270144959 - L1MC5 LINE L1 -173 7788 7369 2093 117 9 19 chr1 12048757 12049073 -270144591 - AluSq SINE Alu 0 313 1 1998 142 0 16 chr1 12049361 12049672 -270143992 - AluSx SINE Alu -6 306 1 798 163 7 35 chr1 12050703 12050844 -270142820 + AluJo SINE Alu 6 142 -170 1570 163 17 7 chr1 12050844 12051133 -270142531 + AluJo SINE Alu 1 292 -20 1071 161 30 94 chr1 12051175 12051299 -270142365 - L1MB8 LINE L1 -1 6177 6077 2299 81 3 0 chr1 12051299 12051596 -270142068 - AluSp SINE Alu -15 298 1 1071 161 30 94 chr1 12051596 12051738 -270141926 - L1MB8 LINE L1 -101 6077 5928 841 161 0 0 chr1 12051909 12052039 -270141625 + FRAM SINE Alu 28 157 -19 2588 184 50 10 chr1 12052044 12052544 -270141120 - MER21B LTR ERV1 -255 608 89 486 33 0 0 chr1 12052571 12052631 -270141033 + (TG)n Simple_repeat Simple_repeat 2 61 0 3041 151 125 9 chr1 12052633 12053210 -270140454 + LTR48B LTR ERV1 1 644 0 2129 121 0 0 chr1 12053311 12053608 -270140056 - AluSx SINE Alu -15 297 1 372 296 66 26 chr1 12053795 12053947 -270139717 - L1MC4a LINE L1 -1902 5906 5749 2012 113 13 13 chr1 12054163 12054465 -270139199 - AluSx SINE Alu -10 302 1 2511 40 0 3 chr1 12054668 12054967 -270138697 + AluY SINE Alu 1 298 -13 182 235 0 0 chr1 12055243 12055277 -270138387 - MER5A DNA MER1_type -8 181 148 2226 106 3 0 chr1 12055308 12055611 -270138053 - AluSx SINE Alu -8 304 1 193 276 0 53 chr1 12055611 12055687 -270137977 - MER5A DNA MER1_type -114 75 4 695 150 94 0 chr1 12055949 12056076 -270137588 + Tigger1 DNA MER2_type 1 139 -2279 * 1288 139 9 0 chr1 12056072 12056288 -270137376 + Tigger1 DNA MER2_type 2200 2417 -1 867 164 0 20 chr1 12057002 12057154 -270136510 - AluJb SINE Alu -8 304 156 951 111 0 15 chr1 12057896 12058031 -270135633 + FLAM_C SINE Alu 1 133 0 1204 143 80 27 chr1 12058182 12058406 -270135258 + MER46A DNA MER2_type 1 236 0 791 177 0 0 chr1 12058706 12058830 -270134834 + FLAM_A SINE Alu 1 124 -9 928 113 81 6 chr1 12058943 12059103 -270134561 - MER30 DNA MER1_type -58 172 1 478 313 54 19 chr1 12059612 12059871 -270133793 + L1ME LINE L1 4475 4742 -1404 486 140 330 0 chr1 12060112 12060212 -270133452 + FRAM SINE Alu 22 154 -22 411 304 60 75 chr1 12060212 12060401 -270133263 + L1ME LINE L1 4912 5102 -1044 2270 83 0 3 chr1 12060401 12060702 -270132962 + AluY SINE Alu 1 300 -11 2208 109 6 3 chr1 12060709 12061020 -270132644 + AluSq SINE Alu 1 312 -1 411 304 60 75 chr1 12061020 12061157 -270132507 + L1ME LINE L1 5108 5241 -905 254 209 34 101 chr1 12061169 12061192 -270132472 + L1ME LINE L1 5254 5277 -1023 2003 110 10 3 chr1 12061192 12061483 -270132181 + AluSx SINE Alu 1 293 -19 254 209 34 101 chr1 12061483 12061607 -270132057 + L1ME LINE L1 5277 5391 -909 229 231 204 9 chr1 12061642 12061750 -270131914 + L1ME LINE L1 5663 5791 -330 235 271 10 31 chr1 12061808 12061904 -270131760 + L1ME LINE L1 5811 5904 -266 1623 184 57 0 chr1 12062176 12062459 -270131205 - AluJb SINE Alu -13 299 1 23 0 0 0 chr1 12062470 12062493 -270131171 + AT_rich Low_complexity Low_complexity 1 23 0 957 178 6 0 chr1 12062932 12063095 -270130569 + L1PA16 LINE L1 5994 6157 -9 1779 114 0 69 chr1 12063125 12063415 -270130249 + AluSp SINE Alu 35 304 -9 367 257 29 0 chr1 12063416 12063521 -270130143 + MER5A DNA MER1_type 66 173 -16 492 239 26 26 chr1 12063996 12064200 -270129464 - MER58 DNA MER1_type -6 2414 6 426 241 51 29 chr1 12064897 12065034 -270128630 - MIR SINE MIR -44 218 79 2061 109 0 32 chr1 12065537 12065849 -270127815 - AluSx SINE Alu -10 302 1 305 182 15 0 chr1 12065985 12066051 -270127613 - L1PB1 LINE L1 0 6151 6085 1813 106 109 7 chr1 12067347 12067622 -270126042 - AluSg SINE Alu -7 303 1 1373 188 53 44 chr1 12070205 12070546 -270123118 - MER2 DNA MER2_type 0 344 1 299 25 25 0 chr1 12070641 12070681 -270122983 + (TA)n Simple_repeat Simple_repeat 2 42 0 377 69 0 17 chr1 12070681 12070739 -270122925 + (CA)n Simple_repeat Simple_repeat 2 58 0 2133 113 10 0 chr1 12070746 12071047 -270122617 - AluSx SINE Alu -8 304 1 2028 134 7 0 chr1 12071064 12071371 -270122293 - AluSg SINE Alu -1 309 1 568 165 149 0 chr1 12071371 12071492 -270122172 + MER58C DNA MER1_type 77 215 0 1547 189 61 0 chr1 12071603 12071883 -270121781 - AluJo SINE Alu -15 297 1 410 287 87 13 chr1 12071952 12072102 -270121562 - MIR SINE MIR -26 236 76 337 265 185 2 chr1 12072117 12072256 -270121408 - MIR SINE MIR -65 143 5 375 203 0 0 chr1 12073953 12074032 -270119632 + (TG)n Simple_repeat Simple_repeat 2 80 0 557 237 0 9 chr1 12074991 12075105 -270118559 - MER58B DNA MER1_type 0 341 229 1874 159 3 10 chr1 12075177 12075491 -270118173 - AluJo SINE Alu 0 312 1 298 359 36 10 chr1 12075565 12075757 -270117907 - L2 LINE L2 -183 3089 2893 1061 250 105 15 chr1 12077559 12077951 -270115713 - MLT1C LTR MaLR -34 433 7 228 339 24 39 chr1 12077998 12078125 -270115539 - MIR SINE MIR -115 147 23 2004 120 0 0 chr1 12079168 12079478 -270114186 - AluJb SINE Alu 0 310 1 2205 61 7 4 chr1 12083080 12083384 -270110280 - AluY SINE Alu 0 305 1 202 383 26 0 chr1 12084598 12084713 -270108951 - L2 LINE L2 -255 3017 2900 1899 157 3 0 chr1 12085007 12085301 -270108363 - AluJb SINE Alu -17 295 1 2453 47 0 3 chr1 12086235 12086536 -270107128 - AluY SINE Alu -11 300 1 2220 82 7 3 chr1 12086536 12086830 -270106834 - AluSc SINE Alu -14 295 1 230 232 7 167 chr1 12088853 12088935 -270104729 + MIR SINE MIR 85 131 -131 1945 147 0 0 chr1 12088935 12089247 -270104417 + AluSx SINE Alu 1 312 0 230 232 7 167 chr1 12089247 12089313 -270104351 + MIR SINE MIR 131 206 -56 480 339 59 5 chr1 12089366 12089587 -270104077 - MIR SINE MIR -14 248 16 1544 180 46 3 chr1 12090657 12090940 -270102724 + AluJb SINE Alu 1 295 -17 760 178 8 0 chr1 12090940 12091069 -270102595 + FLAM_C SINE Alu 2 131 -2 1260 238 130 42 chr1 12091088 12091577 -270102087 - MLT1F1 LTR MaLR -26 541 12 1571 86 0 0 chr1 12091626 12091823 -270101841 + AluSx SINE Alu 1 197 -115 771 237 122 100 chr1 12091865 12092099 -270101565 - LTR16C LTR ERVL 0 491 264 1376 169 55 22 chr1 12092099 12092405 -270101259 - AluJb SINE Alu 0 316 2 771 237 122 100 chr1 12092405 12092434 -270101230 - LTR16C LTR ERVL -227 264 237 1778 158 0 38 chr1 12092434 12092751 -270100913 + AluJo SINE Alu 1 305 -7 771 237 122 100 chr1 12092751 12092895 -270100769 - LTR16C LTR ERVL -254 237 73 2056 79 7 4 chr1 12093257 12093566 -270100098 + AluY SINE Alu 5 314 0 2091 129 0 6 chr1 12093824 12094135 -270099529 + AluSx SINE Alu 3 311 -1 1976 133 13 28 chr1 12094147 12094464 -270099200 + AluJb SINE Alu 1 312 0 467 226 152 56 chr1 12095044 12095170 -270098494 + MIR SINE MIR 39 191 -71 2166 113 3 0 chr1 12095170 12095472 -270098192 + AluSx SINE Alu 1 303 -9 467 226 152 56 chr1 12095472 12095549 -270098115 + MIR SINE MIR 191 259 -3 1687 165 3 34 chr1 12095643 12095965 -270097699 - AluJb SINE Alu 0 312 1 2191 104 0 10 chr1 12095986 12096284 -270097380 - AluSq SINE Alu -18 295 1 332 251 43 129 chr1 12096467 12096630 -270097034 + MIR SINE MIR 21 169 -93 287 99 0 0 chr1 12097701 12097755 -270095909 + MIR SINE MIR 101 153 -62 309 26 0 0 chr1 12098771 12098809 -270094855 + (CTG)n Simple_repeat Simple_repeat 3 40 0 1843 86 47 0 chr1 12099791 12100046 -270093618 + AluY SINE Alu 1 267 -44 408 40 0 0 chr1 12100050 12100100 -270093564 + (GAAA)n Simple_repeat Simple_repeat 3 52 0 291 283 30 102 chr1 12100466 12100632 -270093032 - MIR SINE MIR -96 166 13 321 26 0 0 chr1 12100875 12100913 -270092751 + (TG)n Simple_repeat Simple_repeat 1 38 0 319 278 7 69 chr1 12101511 12101590 -270092074 + MIR SINE MIR 124 192 -70 2946 186 4 21 chr1 12101590 12102102 -270091562 + MLT1D LTR MaLR 1 503 -2 319 278 7 69 chr1 12102102 12102166 -270091498 + MIR SINE MIR 192 258 -4 350 242 228 0 chr1 12102278 12102427 -270091237 + MIR SINE MIR 10 192 -70 277 314 65 72 chr1 12102454 12102760 -270090904 - L2 LINE L2 -52 3220 2917 2210 107 3 0 chr1 12103048 12103356 -270090308 - AluSx SINE Alu -3 309 1 1864 132 0 40 chr1 12103501 12103804 -270089860 - AluJb SINE Alu -21 291 1 360 0 0 0 chr1 12103969 12104009 -270089655 + (TG)n Simple_repeat Simple_repeat 2 41 0 1268 159 56 106 chr1 12104147 12104478 -270089186 + AluJo SINE Alu 6 312 0 203 185 0 19 chr1 12104552 12104606 -270089058 + CT-rich Low_complexity Low_complexity 1 53 0 534 224 12 73 chr1 12104703 12104868 -270088796 + MLT1K LTR MaLR 432 586 -2 1929 114 4 14 chr1 12105172 12105453 -270088211 - AluSx SINE Alu -34 278 1 2125 136 21 26 chr1 12105557 12105771 -270087893 - MLT1B LTR MaLR 0 390 176 2332 96 0 0 chr1 12105771 12106074 -270087590 - AluSp SINE Alu -10 303 1 2125 136 21 26 chr1 12106074 12106141 -270087523 - MLT1B LTR MaLR -214 176 110 451 143 26 0 chr1 12106141 12106218 -270087446 - MADE1 DNA Mariner -1 79 1 2125 136 21 26 chr1 12106218 12106280 -270087384 - MLT1B LTR MaLR -280 110 46 1812 160 3 0 chr1 12106280 12106568 -270087096 - AluJo SINE Alu -23 289 1 2125 136 21 26 chr1 12106568 12106605 -270087059 - MLT1B LTR MaLR -344 46 10 618 269 186 44 chr1 12106680 12107078 -270086586 - MLT1H1 LTR MaLR 0 555 215 2276 82 3 19 chr1 12107078 12107395 -270086269 + AluSp SINE Alu 1 312 -1 1253 170 170 23 chr1 12107405 12107664 -270086000 + AluJo SINE Alu 1 297 -5 618 269 186 44 chr1 12107664 12107731 -270085933 - MLT1H1 LTR MaLR -347 208 75 1984 133 0 9 chr1 12108028 12108343 -270085321 - AluJb SINE Alu 0 312 1 194 243 157 0 chr1 12108594 12108664 -270085000 - MIR SINE MIR -53 209 129 292 250 36 0 chr1 12108693 12108777 -270084887 + LTR33 LTR ERVL 2 88 -433 1781 177 3 3 chr1 12109012 12109323 -270084341 - AluJo SINE Alu -1 311 1 326 250 42 10 chr1 12109340 12109436 -270084228 + LTR33 LTR ERVL 422 520 -1 227 186 0 0 chr1 12109440 12109483 -270084181 + (CACCAT)n Simple_repeat Simple_repeat 5 47 0 1053 236 91 86 chr1 12110102 12110278 -270083386 - L2 LINE L2 0 3313 3140 2005 105 31 0 chr1 12110278 12110564 -270083100 + AluSx SINE Alu 1 295 -17 1053 236 91 86 chr1 12110564 12110706 -270082958 - L2 LINE L2 -173 3140 3000 1669 152 7 14 chr1 12110706 12110995 -270082669 + AluJb SINE Alu 1 287 -25 216 0 0 0 chr1 12110995 12111019 -270082645 + (TA)n Simple_repeat Simple_repeat 2 25 0 1053 236 91 86 chr1 12111019 12111030 -270082634 - L2 LINE L2 -313 3000 2991 693 113 113 48 chr1 12111030 12111154 -270082510 + FLAM_C SINE Alu 1 132 -1 1053 236 91 86 chr1 12111154 12111392 -270082272 - L2 LINE L2 -322 2991 2750 2001 130 0 0 chr1 12111392 12111698 -270081966 - AluSg SINE Alu 0 306 1 1053 236 91 86 chr1 12111698 12111741 -270081923 - L2 LINE L2 -563 2750 2709 1068 194 134 0 chr1 12111809 12112062 -270081602 + LTR50 LTR ERVL 504 790 -5 1578 130 0 97 chr1 12112108 12112407 -270081257 - AluJo SINE Alu -37 275 6 1344 245 61 48 chr1 12112455 12112912 -270080752 - MLT1C LTR MaLR 0 467 5 1926 110 0 98 chr1 12113101 12113436 -270080228 - AluJb SINE Alu 0 302 1 1635 221 81 18 chr1 12114564 12114998 -270078666 + MLT1C LTR MaLR 3 463 -4 852 240 125 49 chr1 12115178 12115568 -270078096 + MLT1G1 LTR MaLR 2 449 -100 2026 117 7 7 chr1 12115568 12115868 -270077796 + AluSq SINE Alu 1 300 -13 852 240 125 49 chr1 12115868 12115978 -270077686 + MLT1G1 LTR MaLR 449 549 0 458 229 57 0 chr1 12116027 12116132 -270077532 - L2 LINE L2 -1 3312 3202 189 0 0 0 chr1 12116167 12116188 -270077476 + (CTAAT)n Simple_repeat Simple_repeat 2 22 0 2051 119 0 0 chr1 12116616 12116901 -270076763 + AluSx SINE Alu 1 285 -27 303 93 0 0 chr1 12116902 12116945 -270076719 + (CA)n Simple_repeat Simple_repeat 2 44 0 405 169 0 0 chr1 12116951 12117034 -270076630 + (TG)n Simple_repeat Simple_repeat 2 84 0 189 0 0 0 chr1 12117348 12117369 -270076295 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1787 141 0 7 chr1 12117371 12117655 -270076009 - AluJo SINE Alu -30 282 1 223 178 22 0 chr1 12120786 12120831 -270072833 + CT-rich Low_complexity Low_complexity 3 48 0 215 315 130 0 chr1 12121022 12121130 -270072534 - MIR SINE MIR -138 124 3 240 59 0 0 chr1 12121258 12121292 -270072372 + (TCCCC)n Simple_repeat Simple_repeat 1 34 0 185 170 0 64 chr1 12121506 12121553 -270072111 - L2 LINE L2 -6 3266 3223 237 279 81 72 chr1 12121569 12121775 -270071889 - L2 LINE L2 -198 3074 2864 1785 191 75 85 chr1 12121775 12122282 -270071382 + MLT1D LTR MaLR 4 505 0 237 279 81 72 chr1 12122282 12122297 -270071367 - L2 LINE L2 -408 2864 2851 694 135 0 0 chr1 12122538 12122642 -270071022 + AluJb SINE Alu 207 310 -2 23 0 0 0 chr1 12122678 12122701 -270070963 + AT_rich Low_complexity Low_complexity 1 23 0 2416 70 0 6 chr1 12124025 12124338 -270069326 - AluY SINE Alu 0 311 1 22 0 0 0 chr1 12124339 12124361 -270069303 + AT_rich Low_complexity Low_complexity 1 22 0 1892 155 7 3 chr1 12124410 12124733 -270068931 + AluSx SINE Alu 2 325 0 915 72 0 85 chr1 12125213 12125366 -270068298 - FLAM_C SINE Alu 0 143 4 183 322 186 0 chr1 12125930 12126048 -270067616 - L2 LINE L2 -42 3271 3132 2024 125 3 7 chr1 12126558 12126861 -270066803 + AluSx SINE Alu 1 302 -10 287 286 0 0 chr1 12127850 12127927 -270065737 - MIR SINE MIR -45 217 141 2170 115 0 13 chr1 12127969 12128282 -270065382 - AluSx SINE Alu -3 309 1 217 260 0 0 chr1 12128454 12128504 -270065160 - MIR SINE MIR -92 116 67 2069 129 0 22 chr1 12129365 12129683 -270063981 + AluSx SINE Alu 1 311 -1 261 203 0 95 chr1 12129702 12129776 -270063888 - Charlie8 DNA MER1_type -1002 1415 1349 2723 188 13 6 chr1 12129782 12130318 -270063346 + LTR5 LTR ERVK 1 540 -429 2170 66 59 0 chr1 12130328 12130615 -270063049 + AluY SINE Alu 1 304 -7 1227 212 25 96 chr1 12130615 12131063 -270062601 + LTR5 LTR ERVK 540 955 -14 361 210 64 95 chr1 12131395 12131544 -270062120 - MIR3 SINE MIR -63 145 55 1650 160 26 13 chr1 12131544 12131851 -270061813 + AluJo SINE Alu 2 312 0 361 210 64 95 chr1 12131851 12131896 -270061768 - MIR3 SINE MIR -153 55 10 255 302 52 35 chr1 12131916 12132032 -270061632 + HERVL66 LTR ERVL 1442 1559 -2770 2002 125 7 0 chr1 12132727 12133023 -270060641 - AluSx SINE Alu -14 298 1 733 185 7 22 chr1 12133042 12133177 -270060487 - FLAM_A SINE Alu 0 133 1 590 285 36 6 chr1 12133585 12133750 -270059914 - MIR SINE MIR -69 193 24 1191 132 0 6 chr1 12134262 12134715 -270058949 + (TGGA)n Simple_repeat Simple_repeat 1 450 0 342 202 124 11 chr1 12135322 12135411 -270058253 + MIR SINE MIR 32 130 -132 69 13 0 0 chr1 12135477 12135553 -270058111 + AT_rich Low_complexity Low_complexity 1 76 0 725 143 0 53 chr1 12135555 12135688 -270057976 + FLAM_C SINE Alu 1 126 -7 2248 104 3 0 chr1 12135693 12136002 -270057662 + AluSg SINE Alu 1 310 0 2060 98 51 0 chr1 12136029 12136324 -270057340 + AluSx SINE Alu 3 312 0 230 283 0 0 chr1 12136388 12136441 -270057223 - Charlie8 DNA MER1_type -2364 53 1 824 119 0 60 chr1 12136469 12136603 -270057061 + FLAM_A SINE Alu 1 126 -7 2350 90 3 0 chr1 12136614 12136924 -270056740 + AluY SINE Alu 1 311 0 446 293 14 117 chr1 12137034 12137386 -270056278 + L1MC5 LINE L1 7302 7617 -344 263 270 35 58 chr1 12137386 12137560 -270056104 + L1MEc LINE L1 1500 1669 -4727 345 113 32 0 chr1 12137576 12137638 -270056026 + HY3 scRNA scRNA 37 100 -1 2533 45 0 3 chr1 12137663 12137974 -270055690 + AluY SINE Alu 1 310 -1 209 200 0 0 chr1 12139672 12139707 -270053957 + polypyrimidine Low_complexity Low_complexity 2 36 0 2155 102 0 3 chr1 12139753 12140048 -270053616 + AluY SINE Alu 1 294 -17 1077 117 32 0 chr1 12140053 12140207 -270053457 + AluSg/x SINE Alu 138 296 -16 472 309 42 75 chr1 12140214 12140314 -270053350 - L1ME LINE L1 -426 5695 5593 1929 149 0 0 chr1 12140314 12140602 -270053062 + AluSx SINE Alu 1 288 -24 472 309 42 75 chr1 12140602 12140892 -270052772 - L1ME LINE L1 -528 5593 5313 825 174 0 0 chr1 12140923 12141055 -270052609 - FLAM_C SINE Alu 0 133 2 1763 148 7 10 chr1 12141213 12141510 -270052154 + AluJb SINE Alu 1 296 -16 1731 115 93 0 chr1 12141510 12141788 -270051876 + AluSx SINE Alu 1 304 -8 2442 81 0 0 chr1 12141789 12142098 -270051566 + AluSg SINE Alu 1 309 -1 651 164 72 12 chr1 12142121 12142286 -270051378 + LTR24B LTR ERV1 277 569 0 529 318 11 49 chr1 12142286 12142550 -270051114 + LTR24B-int LTR ERV1 1 254 -4869 2064 123 0 3 chr1 12142550 12142850 -270050814 + AluSx SINE Alu 1 299 -13 2170 129 0 0 chr1 12142856 12143167 -270050497 + AluSx SINE Alu 2 312 0 261 0 0 0 chr1 12143199 12143228 -270050436 + (CA)n Simple_repeat Simple_repeat 2 30 0 819 142 47 0 chr1 12143259 12143386 -270050278 + AluJ SINE Alu 2 134 -178 276 269 93 0 chr1 12143418 12143526 -270050138 + L1MC4a LINE L1 6036 6153 -1655 1103 178 0 0 chr1 12143530 12143715 -270049949 + AluJ SINE Alu 119 303 -9 352 259 93 76 chr1 12143724 12143802 -270049862 + L1M4 LINE L1 3776 3851 -2295 2024 132 3 0 chr1 12143802 12144098 -270049566 + AluSx SINE Alu 3 299 -13 352 259 93 76 chr1 12144098 12144269 -270049395 + L1M4 LINE L1 3851 4033 -2113 2118 123 7 0 chr1 12144269 12144571 -270049093 + AluSc SINE Alu 1 304 -5 352 259 93 76 chr1 12144571 12144621 -270049043 + L1M4 LINE L1 4033 4081 -2065 790 187 0 8 chr1 12144623 12144757 -270048907 + FLAM_C SINE Alu 1 133 0 237 170 0 0 chr1 12144764 12144811 -270048853 + Alu SINE Alu 87 133 -169 22 0 0 0 chr1 12144811 12144833 -270048831 + AT_rich Low_complexity Low_complexity 1 22 0 1267 245 47 1 chr1 12144877 12145263 -270048401 - L1MB5 LINE L1 -79 6105 5663 2302 77 10 0 chr1 12145268 12145566 -270048098 - AluSx SINE Alu -11 301 1 224 235 20 0 chr1 12145675 12145726 -270047938 + CT-rich Low_complexity Low_complexity 1 52 0 1639 171 90 38 chr1 12145783 12146129 -270047535 - MLT1A1 LTR MaLR 0 365 2 2206 102 0 0 chr1 12146374 12146678 -270046986 - AluSx SINE Alu -8 304 1 213 248 205 0 chr1 12146766 12146883 -270046781 - L2 LINE L2 -2128 1186 1046 378 85 41 0 chr1 12147009 12147080 -270046584 - AluJ/FLAM SINE Alu -245 57 1 349 230 80 0 chr1 12147331 12147431 -270046233 - MER5A DNA MER1_type 0 189 82 760 168 8 0 chr1 12147446 12147571 -270046093 - FLAM_C SINE Alu -7 126 1 21 36 0 0 chr1 12147574 12147602 -270046062 + AT_rich Low_complexity Low_complexity 1 28 0 261 71 0 0 chr1 12147650 12147693 -270045971 - HSMAR1 DNA Mariner -37 43 1 813 83 0 42 chr1 12148068 12148188 -270045476 + U5 snRNA snRNA 1 115 -1 1334 159 19 41 chr1 12148442 12148713 -270044951 + MER1B DNA MER1_type 75 339 0 383 201 190 4 chr1 12148906 12149060 -270044604 - MLT1J LTR MaLR -310 167 1 2391 56 0 34 chr1 12149103 12149423 -270044241 + AluSx SINE Alu 1 309 -3 228 170 0 0 chr1 12149460 12149513 -270044151 + (CCCCG)n Simple_repeat Simple_repeat 5 57 0 774 75 0 50 chr1 12149723 12149843 -270043821 - U5 snRNA snRNA -1 115 2 225 104 83 0 chr1 12150168 12150216 -270043448 - L1MA3 LINE L1 0 6305 6254 2336 64 0 3 chr1 12150227 12150522 -270043142 - AluSx SINE Alu -18 294 1 1933 215 46 73 chr1 12150685 12151226 -270042438 - MLT2B3 LTR ERVL -7 547 20 1813 81 0 12 chr1 12151226 12151472 -270042192 - AluSg/x SINE Alu 0 312 70 1933 215 46 73 chr1 12151472 12151492 -270042172 - MLT2B3 LTR ERVL -534 20 1 206 324 15 0 chr1 12151579 12151647 -270042017 + MIR3 SINE MIR 87 155 -53 1791 126 40 11 chr1 12151832 12152110 -270041554 + AluJo SINE Alu 5 290 -22 349 268 101 53 chr1 12152167 12152329 -270041335 + L2 LINE L2 2970 3148 -124 4339 176 44 54 chr1 12152329 12153293 -270040371 - LTR13 LTR ERVK 0 954 1 349 268 101 53 chr1 12153293 12153358 -270040306 + L2 LINE L2 3148 3208 -64 374 296 94 19 chr1 12153609 12153768 -270039896 + MIR SINE MIR 12 182 -80 837 291 130 23 chr1 12153774 12154259 -270039405 + MLT1K LTR MaLR 19 555 -33 1797 179 0 13 chr1 12154261 12154574 -270039090 - AluJo SINE Alu -3 309 1 1882 115 45 10 chr1 12154618 12154906 -270038758 + AluJb SINE Alu 1 298 -14 1630 193 21 56 chr1 12154990 12155320 -270038344 - MLT1A1 LTR MaLR -1 364 47 1694 174 30 13 chr1 12155320 12155619 -270038045 + AluJb SINE Alu 1 304 -8 1630 193 21 56 chr1 12155619 12155661 -270038003 - MLT1A1 LTR MaLR -318 47 5 2158 149 147 29 chr1 12155781 12155848 -270037816 - MSTB2 LTR MaLR 0 457 399 2081 103 3 39 chr1 12155848 12156025 -270037639 - AluSc SINE Alu -8 301 119 218 32 32 0 chr1 12156025 12156056 -270037608 + (TTTTG)n Simple_repeat Simple_repeat 1 32 0 2294 57 0 4 chr1 12156056 12156337 -270037327 - AluY SINE Alu -31 280 1 2081 103 3 39 chr1 12156337 12156470 -270037194 - AluSc SINE Alu -188 121 1 2158 149 147 29 chr1 12156470 12156811 -270036853 - MSTB2 LTR MaLR -58 399 1 2234 101 0 13 chr1 12157076 12157392 -270036272 + AluSx SINE Alu 1 312 0 2380 63 7 0 chr1 12157571 12157870 -270035794 + AluY SINE Alu 1 301 -10 185 314 29 0 chr1 12158107 12158177 -270035487 + MIR SINE MIR 70 141 -67 2228 85 3 0 chr1 12158340 12158633 -270035031 - AluSp SINE Alu -19 294 1 223 187 0 40 chr1 12160946 12161021 -270032643 + GA-rich Low_complexity Low_complexity 5 76 0 23 0 0 0 chr1 12161433 12161456 -270032208 + AT_rich Low_complexity Low_complexity 1 23 0 2307 103 0 0 chr1 12161456 12161766 -270031898 - AluSx SINE Alu -2 310 1 1855 166 0 0 chr1 12161769 12162064 -270031600 - AluJo SINE Alu -17 295 1 198 0 0 0 chr1 12162069 12162091 -270031573 + (T)n Simple_repeat Simple_repeat 1 22 0 1140 158 0 0 chr1 12162094 12162271 -270031393 - FRAM SINE Alu 0 176 1 919 158 7 0 chr1 12163795 12163947 -270029717 - AluSx SINE Alu -16 296 144 574 57 0 0 chr1 12164099 12164169 -270029495 + Alu SINE Alu 2 71 -240 1013 88 15 0 chr1 12164169 12164306 -270029358 - AluSx SINE Alu -173 139 1 339 218 102 82 chr1 12164342 12164489 -270029175 + L2 LINE L2 3159 3308 -5 298 314 153 7 chr1 12164871 12165008 -270028656 - MIR SINE MIR -55 207 51 23 33 0 0 chr1 12165638 12165668 -270027996 + GC_rich Low_complexity Low_complexity 1 30 0 27 0 0 0 chr1 12166015 12166042 -270027622 + GC_rich Low_complexity Low_complexity 1 27 0 209 300 17 0 chr1 12166185 12166305 -270027359 + (CCG)n Simple_repeat Simple_repeat 3 124 0 2349 65 0 26 chr1 12166699 12167009 -270026655 + AluSg SINE Alu 2 303 -7 189 203 14 29 chr1 12167058 12167127 -270026537 + GA-rich Low_complexity Low_complexity 2 69 0 2113 91 0 70 chr1 12167135 12167271 -270026393 + AluSx SINE Alu 1 145 -167 2484 64 0 0 chr1 12167271 12167582 -270026082 + AluY SINE Alu 1 311 0 2113 91 0 70 chr1 12167582 12167774 -270025890 + AluSx SINE Alu 145 306 -6 1925 142 23 0 chr1 12168257 12168559 -270025105 - AluSx SINE Alu 0 312 4 189 0 0 0 chr1 12168561 12168582 -270025082 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 2030 107 11 0 chr1 12168582 12168862 -270024802 - AluSq SINE Alu -30 283 1 198 0 0 0 chr1 12168863 12168885 -270024779 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 1631 167 0 42 chr1 12168885 12169173 -270024491 - AluJb SINE Alu -30 282 7 582 92 0 0 chr1 12169186 12169273 -270024391 - L1PA16 LINE L1 -1 6165 6079 2314 75 3 3 chr1 12169274 12169569 -270024095 - AluSp SINE Alu -18 295 1 435 97 0 0 chr1 12169576 12169638 -270024026 + Alu SINE Alu 243 304 -8 23 54 0 0 chr1 12169642 12169679 -270023985 + AT_rich Low_complexity Low_complexity 1 37 0 1647 161 19 63 chr1 12170166 12170483 -270023181 - AluJb SINE Alu -9 303 1 344 304 40 61 chr1 12170564 12170712 -270022952 + MIR SINE MIR 48 192 -70 1725 152 10 30 chr1 12170737 12171039 -270022625 + AluJb SINE Alu 1 296 -16 253 336 18 18 chr1 12171210 12171323 -270022341 + MIR SINE MIR 33 145 -63 766 163 0 44 chr1 12171392 12171527 -270022137 - AluJo SINE Alu -178 134 6 1997 125 3 0 chr1 12171586 12171875 -270021789 - AluSp SINE Alu -23 290 1 27 62 0 0 chr1 12171900 12171948 -270021716 + AT_rich Low_complexity Low_complexity 1 48 0 248 239 0 43 chr1 12171996 12172088 -270021576 - HAL1b LINE L1 -82 1266 1179 2220 101 0 0 chr1 12172093 12172390 -270021274 + AluSg1 SINE Alu 1 297 -12 1970 154 0 0 chr1 12172497 12172809 -270020855 - AluJb SINE Alu 0 312 1 2322 88 3 0 chr1 12173015 12173320 -270020344 - AluSg SINE Alu -4 306 1 2185 92 7 0 chr1 12173505 12173800 -270019864 + AluSp SINE Alu 5 301 -12 1098 153 0 0 chr1 12173800 12173977 -270019687 + AluJb SINE Alu 134 310 -2 275 305 48 0 chr1 12174213 12174318 -270019346 - MIR SINE MIR -36 226 117 273 283 151 0 chr1 12174850 12175002 -270018662 + MIR3 SINE MIR 13 187 -21 488 239 147 73 chr1 12175028 12175246 -270018418 - MIR SINE MIR 0 262 29 1647 128 3 66 chr1 12175401 12175428 -270018236 - AluSx SINE Alu 0 312 285 202 39 0 0 chr1 12175428 12175454 -270018210 + (TTTA)n Simple_repeat Simple_repeat 2 84 0 1647 128 3 66 chr1 12175454 12175542 -270018122 - AluSx SINE Alu -27 285 193 2249 101 0 0 chr1 12175542 12175839 -270017825 - AluSg SINE Alu -13 297 1 1473 136 0 0 chr1 12175839 12176045 -270017619 - AluSx SINE Alu -106 206 1 1647 128 3 66 chr1 12175839 12176011 -270017653 - AluSx SINE Alu -119 193 35 666 159 8 32 chr1 12176011 12176053 -270017611 - AluSg/x SINE Alu -3 306 185 366 232 125 9 chr1 12176055 12176167 -270017497 - MIR SINE MIR -68 140 16 2003 128 0 0 chr1 12176425 12176739 -270016925 - AluSx SINE Alu 0 314 1 2318 109 0 0 chr1 12176751 12177064 -270016600 - AluSq SINE Alu 0 313 1 224 420 35 0 chr1 12177144 12177287 -270016377 + MIR SINE MIR 101 248 -14 2259 110 7 0 chr1 12177859 12178167 -270015497 - AluSx SINE Alu -2 310 1 243 359 16 31 chr1 12178172 12178300 -270015364 - MIR SINE MIR -91 171 46 2155 109 17 0 chr1 12179524 12179818 -270013846 - AluSq SINE Alu -8 305 7 805 169 15 7 chr1 12179844 12179980 -270013684 - AluJo SINE Alu -175 137 1 1463 178 0 0 chr1 12179993 12180235 -270013429 - AluJo SINE Alu -66 246 5 694 180 7 43 chr1 12180364 12180503 -270013161 - MIR SINE MIR -37 225 92 531 255 12 69 chr1 12180900 12181101 -270012563 + MIR SINE MIR 36 228 -34 431 137 0 0 chr1 12181149 12181222 -270012442 - Alu SINE Alu -2 309 237 1732 102 3 129 chr1 12181256 12181384 -270012280 - AluSx SINE Alu -20 292 150 243 0 0 0 chr1 12181384 12181411 -270012253 + (TTA)n Simple_repeat Simple_repeat 2 28 0 2070 108 3 14 chr1 12181411 12181698 -270011966 - AluSq SINE Alu -27 286 3 1732 102 3 129 chr1 12181698 12181902 -270011762 - AluSx SINE Alu -160 152 1 2043 121 3 33 chr1 12181902 12182209 -270011455 - AluSq SINE Alu -15 298 1 344 224 199 25 chr1 12182650 12182811 -270010853 + MER5A DNA MER1_type 1 189 0 2126 120 0 13 chr1 12182896 12183204 -270010460 - AluSg1 SINE Alu -5 304 1 * 2230 119 0 0 chr1 12183203 12183513 -270010151 - AluSq SINE Alu -3 310 1 403 274 256 42 chr1 12183699 12183867 -270009797 + MIR SINE MIR 2 227 -35 2129 105 3 3 chr1 12183867 12184161 -270009503 + AluSx SINE Alu 1 294 -18 403 274 256 42 chr1 12184161 12184207 -270009457 + MIR SINE MIR 227 262 0 303 49 0 0 chr1 12184339 12184380 -270009284 + (CA)n Simple_repeat Simple_repeat 2 42 0 1612 162 22 50 chr1 12185054 12185375 -270008289 + AluJb SINE Alu 1 312 0 2277 115 0 0 chr1 12185613 12185925 -270007739 - AluSx SINE Alu 0 312 1 888 270 14 0 chr1 12185938 12186153 -270007511 - MIR SINE MIR -25 237 20 315 318 37 32 chr1 12186330 12186519 -270007145 + MER117 DNA MER1_type 8 197 0 2199 127 76 95 chr1 12186676 12186904 -270006760 - MSTB LTR MaLR 0 426 195 1718 129 111 7 chr1 12186904 12187183 -270006481 + AluSg1 SINE Alu 2 309 0 2199 127 76 95 chr1 12187183 12187208 -270006456 - MSTB LTR MaLR -231 195 171 2014 131 14 0 chr1 12187208 12187499 -270006165 + AluSx SINE Alu 1 295 -17 2199 127 76 95 chr1 12187499 12187677 -270005987 - MSTB LTR MaLR -255 171 2 224 281 31 0 chr1 12187681 12187745 -270005919 + MIR3 SINE MIR 8 73 -135 2067 113 23 7 chr1 12188375 12188675 -270004989 + AluSx SINE Alu 7 311 -1 343 296 20 10 chr1 12188769 12188867 -270004797 - L2 LINE L2 -24 3248 3150 502 287 108 74 chr1 12188867 12189247 -270004417 - MLT1K LTR MaLR -51 537 145 2072 138 0 0 chr1 12189332 12189636 -270004028 - AluSx SINE Alu -8 304 1 601 302 101 39 chr1 12190506 12190716 -270002948 + L2 LINE L2 2294 2490 -824 1977 139 0 10 chr1 12190716 12191010 -270002654 - AluSx SINE Alu -21 291 1 601 302 101 39 chr1 12191010 12191186 -270002478 + L2 LINE L2 2490 2704 -610 1895 104 0 0 chr1 12191200 12191451 -270002213 + AluSx SINE Alu 1 251 -61 46 19 0 0 chr1 12191451 12191504 -270002160 + AT_rich Low_complexity Low_complexity 1 53 0 213 19 111 0 chr1 12191509 12191563 -270002101 + (TA)n Simple_repeat Simple_repeat 2 61 0 2393 65 0 0 chr1 12191564 12191858 -270001806 + AluY SINE Alu 11 304 -7 205 253 23 58 chr1 12192110 12192197 -270001467 + MIR SINE MIR 62 145 -63 886 210 52 4 chr1 12192748 12192977 -270000687 - MLT1A1 LTR MaLR 0 365 126 2056 129 0 0 chr1 12192977 12193272 -270000392 - AluSx SINE Alu -17 295 1 751 225 55 60 chr1 12193289 12193427 -270000237 + MIR SINE MIR 2 139 -123 2220 99 3 0 chr1 12193427 12193719 -269999945 + AluSq SINE Alu 1 293 -20 751 225 55 60 chr1 12193719 12193786 -269999878 + MIR SINE MIR 139 208 -54 1867 159 7 3 chr1 12193786 12194082 -269999582 - AluJb SINE Alu -15 297 1 751 225 55 60 chr1 12194082 12194093 -269999571 + MIR SINE MIR 208 218 -44 1898 123 0 52 chr1 12194104 12194414 -269999250 + AluSq SINE Alu 1 294 -19 299 274 29 39 chr1 12195277 12195407 -269998257 + MIR3 SINE MIR 63 192 -48 2358 94 0 7 chr1 12195533 12195842 -269997822 - AluSx SINE Alu -5 307 1 861 120 0 23 chr1 12195845 12195978 -269997686 - AluJo/FLAM SINE Alu -182 130 1 2088 106 0 10 chr1 12196040 12196333 -269997331 + AluSx SINE Alu 23 312 0 626 260 103 0 chr1 12196589 12196793 -269996871 - MIR SINE MIR -17 245 21 351 271 10 31 chr1 12197452 12197548 -269996116 + MER5A DNA MER1_type 57 150 -39 838 247 22 54 chr1 12198718 12198839 -269994825 + MIR SINE MIR 30 142 -120 2297 96 0 0 chr1 12198839 12199162 -269994502 + AluSq SINE Alu 1 313 0 838 247 22 54 chr1 12199162 12199263 -269994401 + MIR SINE MIR 142 245 -17 1305 109 0 0 chr1 12199352 12199526 -269994138 - AluSg/x SINE Alu -5 307 134 2226 101 3 0 chr1 12199526 12199832 -269993832 - AluY SINE Alu -4 307 1 836 122 0 0 chr1 12199838 12199961 -269993703 - AluSg/x SINE Alu -4 305 183 1623 93 0 13 chr1 12199961 12200186 -269993478 - AluSg1 SINE Alu -87 222 1 215 309 62 12 chr1 12200214 12200295 -269993369 + MER5B DNA MER1_type 29 113 -65 201 236 14 42 chr1 12200365 12200437 -269993227 - L2 LINE L2 -286 2986 2917 250 197 42 28 chr1 12200780 12200851 -269992813 + MIR SINE MIR 80 151 -111 22 0 0 0 chr1 12200996 12201018 -269992646 + AT_rich Low_complexity Low_complexity 1 22 0 1757 177 3 3 chr1 12201018 12201328 -269992336 + AluJo SINE Alu 1 310 -2 284 228 62 53 chr1 12201368 12201524 -269992140 - MER58B DNA MER1_type -2079 341 188 1850 138 0 66 chr1 12201524 12201701 -269991963 - AluJo SINE Alu -11 301 114 198 0 0 0 chr1 12201701 12201723 -269991941 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 1971 121 0 0 chr1 12201723 12202003 -269991661 - AluSx SINE Alu -30 282 3 1850 138 0 66 chr1 12202003 12202144 -269991520 - AluJo SINE Alu -196 116 3 284 228 62 53 chr1 12202144 12202181 -269991483 - MER58B DNA MER1_type -2232 188 153 2459 77 0 0 chr1 12202181 12202492 -269991172 - AluY SINE Alu 0 311 1 694 198 116 17 chr1 12202518 12202675 -269990989 + AluJb SINE Alu 123 300 -12 2366 96 0 0 chr1 12202675 12202987 -269990677 + AluSx SINE Alu 1 312 0 694 198 116 17 chr1 12202987 12203001 -269990663 + AluJb SINE Alu 300 311 -1 313 216 27 14 chr1 12203005 12203079 -269990585 - MER58B DNA MER1_type -266 75 1 304 217 14 0 chr1 12203104 12203173 -269990491 - L1ME LINE L1 -515 5606 5537 950 144 0 6 chr1 12203625 12203806 -269989858 + (TCC)n Simple_repeat Simple_repeat 1 180 0 199 327 0 0 chr1 12204326 12204381 -269989283 + L3b LINE CR1 1334 1388 -195 200 351 13 0 chr1 12205176 12205253 -269988411 - L2 LINE L2 -1 3312 3235 301 341 63 8 chr1 12205708 12205887 -269987777 + MIR SINE MIR 22 205 -57 243 321 28 0 chr1 12205928 12206037 -269987627 + (CA)n Simple_repeat Simple_repeat 1 112 0 180 116 18 107 chr1 12206339 12206451 -269987213 + G-rich Low_complexity Low_complexity 1 102 0 197 135 19 0 chr1 12207514 12207566 -269986098 + (TA)n Simple_repeat Simple_repeat 2 54 0 261 138 0 108 chr1 12207566 12207631 -269986033 - FLAM_A SINE Alu -2 131 76 1196 138 0 0 chr1 12207640 12207656 -269986008 - AluSg/x SINE Alu -11 299 284 234 0 0 0 chr1 12207656 12207682 -269985982 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 1196 138 0 0 chr1 12207682 12207846 -269985818 - AluSg/x SINE Alu -25 285 119 2059 138 0 0 chr1 12207872 12208170 -269985494 - AluSx SINE Alu -14 298 1 31 0 0 0 chr1 12208179 12208210 -269985454 + AT_rich Low_complexity Low_complexity 1 31 0 2234 84 7 10 chr1 12208423 12208731 -269984933 - AluSx SINE Alu -4 308 2 826 180 0 90 chr1 12208756 12208934 -269984730 - FRAM SINE Alu 0 166 5 1807 90 143 4 chr1 12208939 12209205 -269984459 - AluSq SINE Alu 0 303 1 821 195 125 21 chr1 12209481 12209741 -269983923 - MLT1E1 LTR MaLR -6 648 416 1807 161 0 27 chr1 12209741 12209876 -269983788 + AluJb SINE Alu 1 138 -174 2208 94 3 31 chr1 12209876 12210195 -269983469 + AluSx SINE Alu 1 310 -2 1807 161 0 27 chr1 12210195 12210358 -269983306 + AluJb SINE Alu 138 291 -21 821 195 125 21 chr1 12210358 12210562 -269983102 - MLT1E1 LTR MaLR -238 416 6 352 261 11 44 chr1 12210807 12210987 -269982677 + (GGGTG)n Simple_repeat Simple_repeat 3 176 0 * 380 254 9 56 chr1 12210906 12211220 -269982444 + G-rich Low_complexity Low_complexity 1 299 0 1436 97 0 0 chr1 12211398 12211584 -269982080 - AluSq SINE Alu -127 186 1 431 166 16 53 chr1 12212090 12212165 -269981499 + CT-rich Low_complexity Low_complexity 1 77 -103 2037 122 33 3 chr1 12212165 12212468 -269981196 - AluSq SINE Alu -1 312 1 431 166 16 53 chr1 12212468 12212579 -269981085 + CT-rich Low_complexity Low_complexity 77 180 0 185 286 32 16 chr1 12212593 12212656 -269981008 - L2 LINE L2 -10 3303 3240 2054 144 0 0 chr1 12213134 12213433 -269980231 + AluSx SINE Alu 1 299 -13 1419 124 14 23 chr1 12213497 12213714 -269979950 - AluJb SINE Alu -13 299 85 559 207 186 0 chr1 12213764 12213909 -269979755 + MER20 DNA MER1_type 1 172 -47 370 262 220 6 chr1 12213939 12214107 -269979557 - MIR SINE MIR -46 216 13 1985 100 50 0 chr1 12214118 12214399 -269979265 - AluSx SINE Alu -17 295 1 2120 130 0 0 chr1 12215535 12215842 -269977822 - AluSx SINE Alu -5 307 1 1099 118 39 28 chr1 12215891 12216069 -269977595 - AluSq SINE Alu -133 180 1 2089 114 13 7 chr1 12216096 12216395 -269977269 + AluSx SINE Alu 1 301 -11 2266 96 0 0 chr1 12216589 12216890 -269976774 - AluSx SINE Alu -10 302 2 1905 146 7 7 chr1 12216976 12217278 -269976386 + AluSx SINE Alu 1 302 -10 1916 166 0 3 chr1 12217286 12217599 -269976065 + AluSx SINE Alu 1 312 0 184 412 47 26 chr1 12217824 12218009 -269975655 - L2 LINE L2 -659 2655 2463 2162 94 26 19 chr1 12218009 12218316 -269975348 + AluSx SINE Alu 1 309 -3 184 412 47 26 chr1 12218316 12218363 -269975301 - L2 LINE L2 -851 2463 2418 641 147 80 0 chr1 12218726 12218876 -269974788 - MER33 DNA MER1_type -22 341 180 1204 142 44 76 chr1 12218899 12219174 -269974490 + AluJo SINE Alu 22 287 -25 1761 94 112 0 chr1 12219178 12219445 -269974219 - AluSg SINE Alu -13 297 1 255 225 99 0 chr1 12219500 12219571 -269974093 - MER33 DNA MER1_type -237 87 10 278 287 172 0 chr1 12220798 12220920 -269972744 + L2 LINE L2 3126 3268 -4 1828 73 28 0 chr1 12221139 12221386 -269972278 + AluSx SINE Alu 1 254 -58 239 279 32 82 chr1 12222838 12222955 -269970709 + MER103 DNA DNA 16 126 -40 2019 88 3 54 chr1 12222955 12223287 -269970377 - AluY SINE Alu 0 317 1 239 279 32 82 chr1 12223287 12223326 -269970338 + MER103 DNA DNA 126 165 -1 412 289 44 0 chr1 12223695 12223830 -269969834 - L2 LINE L2 -212 3060 2920 2842 157 74 43 chr1 12224412 12225196 -269968468 + MER21A LTR ERV1 3 921 -10 264 368 18 9 chr1 12225221 12225335 -269968329 - MIR SINE MIR -122 140 26 2200 115 0 6 chr1 12225372 12225684 -269967980 - AluSx SINE Alu -2 310 1 2047 115 40 0 chr1 12226497 12226793 -269966871 - AluSg SINE Alu -2 308 1 1961 124 9 22 chr1 12226944 12227259 -269966405 + AluSx SINE Alu 1 311 -1 2175 113 0 0 chr1 12227264 12227564 -269966100 + AluSx SINE Alu 1 300 -12 1655 166 6 52 chr1 12227568 12227893 -269965771 + AluJo SINE Alu 1 310 -2 225 0 0 0 chr1 12228001 12228026 -269965638 + (TG)n Simple_repeat Simple_repeat 2 26 0 2023 111 3 10 chr1 12228026 12228319 -269965345 - AluSg SINE Alu -19 291 1 791 158 23 23 chr1 12228322 12228455 -269965209 - AluJo/FLAM SINE Alu -169 133 1 848 175 28 0 chr1 12228469 12228612 -269965052 - FRAM SINE Alu -15 151 5 2042 137 0 3 chr1 12228619 12228918 -269964746 - AluSx SINE Alu -14 298 1 227 302 207 24 chr1 12229459 12229628 -269964036 - MIR SINE MIR -42 220 21 196 270 79 11 chr1 12230318 12230407 -269963257 - L2 LINE L2 -20 3252 3158 207 291 51 13 chr1 12231294 12231373 -269962291 - L2 LINE L2 -246 3067 2986 2774 10 0 0 chr1 12231559 12231869 -269961795 + AluYa5 SINE Alu 1 310 -1 372 247 7 19 chr1 12231881 12232050 -269961614 + MIR SINE MIR 13 257 -5 709 313 52 4 chr1 12232076 12232309 -269961355 - MIR SINE MIR -10 252 9 795 162 156 6 chr1 12232729 12232896 -269960768 - AluJb SINE Alu -1 311 120 1409 143 64 19 chr1 12232897 12233162 -269960502 - L1MB2 LINE L1 -1 6170 5894 588 188 7 112 chr1 12233175 12233371 -269960293 - MER31-int LTR ERV1 -3250 1686 1391 2294 68 7 13 chr1 12233371 12233678 -269959986 + AluY SINE Alu 2 306 -5 588 188 7 112 chr1 12233678 12233777 -269959887 - MER31-int LTR ERV1 -3545 1391 1283 2326 80 0 16 chr1 12234223 12234535 -269959129 + AluY SINE Alu 1 307 -4 1512 148 9 85 chr1 12234882 12235218 -269958446 + AluJo SINE Alu 5 312 0 2275 111 0 0 chr1 12235267 12235573 -269958091 + AluSx SINE Alu 1 306 -6 2302 95 0 3 chr1 12236672 12236977 -269956687 + AluSx SINE Alu 1 304 -8 2346 86 0 0 chr1 12237794 12238098 -269955566 - AluSg SINE Alu -6 304 1 2055 91 0 7 chr1 12238183 12238458 -269955206 + AluSg SINE Alu 2 274 -36 234 0 0 0 chr1 12238466 12238492 -269955172 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 1040 106 0 0 chr1 12239433 12239574 -269954090 - AluJb SINE Alu -171 141 1 375 219 37 0 chr1 12239642 12239724 -269953940 + FLAM_A SINE Alu 43 127 -6 2280 81 0 10 chr1 12239729 12240037 -269953627 + AluY SINE Alu 1 305 -6 203 331 105 22 chr1 12240051 12240111 -269953553 + MIR SINE MIR 1 55 -207 2285 79 10 0 chr1 12240111 12240403 -269953261 - AluSq SINE Alu -15 298 4 203 331 105 22 chr1 12240403 12240523 -269953141 + MIR SINE MIR 55 196 -66 189 297 141 0 chr1 12240577 12240641 -269953023 - MIR3 SINE MIR -6 202 130 2019 88 4 7 chr1 12240956 12241229 -269952435 - AluSx SINE Alu -40 272 1 1756 170 20 0 chr1 12242328 12242622 -269951042 + AluJo SINE Alu 1 300 -12 471 316 115 43 chr1 12242818 12243301 -269950363 - L1ME2 LINE L1 -217 5947 5413 2304 88 3 0 chr1 12243301 12243597 -269950067 + AluSp SINE Alu 3 299 -14 471 316 115 43 chr1 12243597 12243696 -269949968 - L1ME2 LINE L1 -751 5413 5323 1882 147 3 7 chr1 12245000 12245299 -269948365 - AluSx SINE Alu -14 298 1 9868 44 21 88 chr1 12247683 12249164 -269944500 - SVA Other Other -1 1385 5 249 333 48 32 chr1 12249166 12249292 -269944372 - MIR SINE MIR -115 147 20 2233 107 0 0 chr1 12249788 12250087 -269943577 + AluSq SINE Alu 1 299 -14 216 265 0 0 chr1 12250463 12250512 -269943152 - MIR SINE MIR -117 91 43 299 232 160 16 chr1 12250549 12250674 -269942990 + MIR3 SINE MIR 20 162 -46 499 240 114 17 chr1 12251155 12251357 -269942307 + MIR SINE MIR 13 234 -28 2117 102 3 0 chr1 12253716 12254010 -269939654 - AluSg1 SINE Alu -6 303 9 300 305 199 4 chr1 12254120 12254382 -269939282 + L2 LINE L2 2379 2691 -623 417 242 40 10 chr1 12254991 12255090 -269938574 - L2 LINE L2 -1 3312 3211 1946 105 22 0 chr1 12255094 12255390 -269938274 + AluSg SINE Alu 1 302 0 1327 219 167 38 chr1 12255428 12255551 -269938113 + LTR51 LTR ERV1 130 236 -435 1733 146 38 11 chr1 12255551 12255838 -269937826 - AluJb SINE Alu -15 297 3 1327 219 167 38 chr1 12255838 12255894 -269937770 + LTR51 LTR ERV1 236 283 -388 1993 153 0 0 chr1 12255894 12256194 -269937470 + AluJb SINE Alu 1 300 -12 698 209 0 0 chr1 12256195 12256310 -269937354 - AluJo/FLAM SINE Alu -187 115 1 1327 219 167 38 chr1 12256310 12256607 -269937057 + LTR51 LTR ERV1 282 671 0 697 253 70 0 chr1 12256629 12256815 -269936849 - L1M4 LINE L1 -464 5720 5522 2182 93 7 7 chr1 12256829 12257131 -269936533 - AluSx SINE Alu -10 302 1 2432 70 3 6 chr1 12257312 12257626 -269936038 - AluSp SINE Alu 0 313 1 1118 59 0 0 chr1 12257626 12257761 -269935903 - AluSq/x SINE Alu -177 135 1 372 219 99 53 chr1 12257765 12257916 -269935748 - L1M4 LINE L1 -1100 5046 4889 522 128 12 0 chr1 12257983 12258069 -269935595 - AluS SINE Alu -224 89 3 429 238 131 0 chr1 12258072 12258194 -269935470 - L1M4 LINE L1 -1241 4905 4768 994 151 112 15 chr1 12258194 12258400 -269935264 - AluJb SINE Alu -2 310 85 1293 64 0 74 chr1 12258403 12258605 -269935059 - AluSg/x SINE Alu -7 303 117 2173 60 0 98 chr1 12258725 12259061 -269934603 + AluSg SINE Alu 1 303 -7 479 215 84 0 chr1 12260063 12260170 -269933494 + MIR SINE MIR 25 140 -122 229 65 0 0 chr1 12260275 12260306 -269933358 + Alu SINE Alu 205 235 -67 196 214 0 89 chr1 12260342 12260398 -269933266 - MIR SINE MIR -2 260 210 1096 183 85 64 chr1 12260421 12260594 -269933070 - AluJb SINE Alu 0 302 119 2092 104 0 7 chr1 12260594 12260891 -269932773 - AluSx SINE Alu -6 306 12 1096 183 85 64 chr1 12260891 12261012 -269932652 - AluJb SINE Alu -183 119 2 2532 58 0 0 chr1 12261029 12261340 -269932324 + AluY SINE Alu 1 311 0 566 225 63 23 chr1 12261367 12261557 -269932107 - MIR SINE MIR -54 208 16 265 261 23 23 chr1 12261818 12261906 -269931758 - MIR3 SINE MIR -35 173 86 2033 133 0 0 chr1 12262974 12263276 -269930388 - AluSx SINE Alu -6 306 5 1625 78 136 39 chr1 12263289 12263594 -269930070 - AluY SINE Alu 0 330 1 2267 99 0 0 chr1 12263630 12263934 -269929730 + AluSg SINE Alu 1 304 -6 603 131 0 20 chr1 12263942 12264041 -269929623 - HY1 scRNA scRNA -15 97 1 2270 159 19 82 chr1 12264301 12264339 -269929325 - L1MB3 LINE L1 -9 6174 6135 2195 83 10 0 chr1 12264339 12264627 -269929037 - AluSq SINE Alu -22 291 1 2270 159 19 82 chr1 12264627 12264964 -269928700 - L1MB3 LINE L1 -48 6135 5841 2054 131 0 0 chr1 12264964 12265276 -269928388 - AluSx SINE Alu 0 312 1 2270 159 19 82 chr1 12265276 12265439 -269928225 - L1MB3 LINE L1 -342 5841 5669 512 279 45 22 chr1 12265439 12265618 -269928046 + L2 LINE L2 2682 2864 -450 1651 122 49 0 chr1 12265628 12265891 -269927773 - AluSq SINE Alu -14 299 24 2025 136 0 0 chr1 12265939 12266233 -269927431 + AluSx SINE Alu 1 294 -18 190 217 43 0 chr1 12266304 12266350 -269927314 + L2 LINE L2 1370 1417 -1897 344 302 41 58 chr1 12266593 12266765 -269926899 - MIR SINE MIR -32 230 62 1266 296 124 23 chr1 12266769 12266912 -269926752 + L2 LINE L2 1678 1805 -1509 2077 127 0 13 chr1 12266912 12267226 -269926438 - AluSx SINE Alu -2 310 1 1266 296 124 23 chr1 12267226 12267786 -269925878 + L2 LINE L2 1805 2452 -862 239 250 0 0 chr1 12267787 12267843 -269925821 - Tigger5 DNA MER2_type -9 2314 2259 2066 112 10 0 chr1 12267846 12268141 -269925523 + AluSg SINE Alu 1 298 -12 632 290 151 30 chr1 12268309 12268740 -269924924 + L2 LINE L2 2828 3310 -3 294 259 235 18 chr1 12270286 12270452 -269923212 - MIR SINE MIR -14 248 47 608 120 0 0 chr1 12270473 12270565 -269923099 - AluSp/q SINE Alu -7 306 215 1040 101 0 0 chr1 12270566 12270705 -269922959 + AluSg/x SINE Alu 156 294 -16 221 242 91 91 chr1 12270818 12270950 -269922714 + MIR SINE MIR 120 251 -11 1472 146 97 41 chr1 12272658 12272738 -269920926 - L1M3 LINE L1 -495 5688 5614 1742 157 3 20 chr1 12272738 12273038 -269920626 - AluJb SINE Alu -17 295 1 1472 146 97 41 chr1 12273038 12273299 -269920365 - L1M3 LINE L1 -569 5614 5328 562 179 189 0 chr1 12273334 12273440 -269920224 - FLAM_C SINE Alu -16 127 2 269 104 149 15 chr1 12273443 12273510 -269920154 - L1M3 LINE L1 -812 5368 5293 2095 105 10 0 chr1 12273626 12273920 -269919744 + AluSx SINE Alu 1 297 -15 1931 142 0 3 chr1 12273933 12274229 -269919435 + AluSx SINE Alu 1 295 -17 1897 137 31 0 chr1 12274698 12274991 -269918673 - AluSx SINE Alu -10 302 1 190 350 86 43 chr1 12275271 12275528 -269918136 + L2 LINE L2 2973 3240 -73 329 62 0 37 chr1 12275970 12276039 -269917625 + FLAM_A SINE Alu 71 133 0 2325 70 0 7 chr1 12276041 12276340 -269917324 + AluY SINE Alu 1 297 -14 2068 149 0 0 chr1 12276340 12276648 -269917016 + AluSx SINE Alu 1 308 -4 1536 173 87 0 chr1 12276650 12276927 -269916737 - 7SLRNA srpRNA srpRNA -15 305 5 2371 82 0 3 chr1 12276972 12277277 -269916387 + AluSc SINE Alu 1 304 -5 575 259 9 94 chr1 12277357 12277581 -269916083 - L2 LINE L2 0 3313 3109 717 347 126 10 chr1 12277591 12277989 -269915675 + L2 LINE L2 2827 3270 -2 326 277 0 43 chr1 12278648 12278742 -269914922 + MIR SINE MIR 60 149 -113 2726 144 56 34 chr1 12279680 12279721 -269913943 - LTR64 LTR ERVK 0 513 474 1626 179 0 29 chr1 12279721 12280034 -269913630 + AluJb SINE Alu 1 304 -8 2285 87 3 0 chr1 12280035 12280334 -269913330 + AluSp SINE Alu 2 301 -12 2726 144 56 34 chr1 12280334 12280791 -269912873 - LTR64 LTR ERVK -38 475 2 394 241 11 0 chr1 12280867 12280954 -269912710 + MIR SINE MIR 75 162 -100 1858 129 3 14 chr1 12280956 12281288 -269912376 + AluJo SINE Alu 1 329 0 292 198 135 21 chr1 12282018 12282114 -269911550 + MLT1C LTR MaLR 1 107 -360 204 40 0 0 chr1 12282114 12282139 -269911525 + (T)n Simple_repeat Simple_repeat 1 25 0 287 177 16 0 chr1 12282162 12282218 -269911446 - MLT1B LTR MaLR -11 379 322 2061 118 30 7 chr1 12282218 12282523 -269911141 - AluSq SINE Alu -1 312 1 414 0 0 0 chr1 12282572 12282618 -269911046 + (TCTCCC)n Simple_repeat Simple_repeat 1 46 0 5977 47 17 4 chr1 12282618 12283684 -269909980 + SVA Other Other 57 962 -424 802 269 54 31 chr1 12283718 12283826 -269909838 + MLT1C LTR MaLR 110 214 -253 2175 82 16 30 chr1 12283826 12284130 -269909534 + AluSx SINE Alu 1 300 -12 802 269 54 31 chr1 12284130 12284371 -269909293 + MLT1C LTR MaLR 214 467 0 2150 124 3 0 chr1 12284371 12284670 -269908994 + AluSx SINE Alu 1 300 -12 1968 201 34 18 chr1 12284814 12285197 -269908467 + MLT1B LTR MaLR 1 389 -1 2163 127 0 0 chr1 12285607 12285915 -269907749 - AluSx SINE Alu -4 308 1 2069 130 0 0 chr1 12285960 12286267 -269907397 - AluY SINE Alu -4 307 1 889 238 24 10 chr1 12286270 12286476 -269907188 - MIR SINE MIR -36 226 18 454 309 0 6 chr1 12286756 12286937 -269906727 + (CA)n Simple_repeat Simple_repeat 1 180 0 220 298 11 11 chr1 12286968 12287062 -269906602 + (CA)n Simple_repeat Simple_repeat 1 94 0 432 130 0 0 chr1 12287154 12287223 -269906441 + (CA)n Simple_repeat Simple_repeat 1 69 0 1876 155 0 19 chr1 12288019 12288336 -269905328 + AluJb SINE Alu 2 312 0 207 176 0 0 chr1 12288339 12288373 -269905291 + GA-rich Low_complexity Low_complexity 2 35 0 953 266 26 29 chr1 12288680 12288738 -269904926 + MLT1B LTR MaLR 22 79 -311 2278 107 0 0 chr1 12288738 12289048 -269904616 - AluSg SINE Alu 0 310 1 953 266 26 29 chr1 12289048 12289301 -269904363 + MLT1B LTR MaLR 79 332 -58 503 88 0 0 chr1 12289301 12289369 -269904295 + AluS SINE Alu 1 68 -245 1286 147 0 0 chr1 12289472 12289663 -269904001 + AluSp SINE Alu 119 309 -4 263 231 0 15 chr1 12289663 12289728 -269903936 + MLT1B LTR MaLR 327 390 0 329 276 71 0 chr1 12289792 12289890 -269903774 + LTR40a LTR ERVL 96 200 -319 1743 145 10 20 chr1 12290125 12290422 -269903242 - AluJo SINE Alu -18 294 1 2009 131 0 7 chr1 12290514 12290811 -269902853 - AluSx SINE Alu -17 295 1 2093 69 62 21 chr1 12290841 12291129 -269902535 - AluSq SINE Alu -13 300 1 261 220 230 20 chr1 12291135 12291235 -269902429 - L2 LINE L2 0 3313 3193 434 313 67 25 chr1 12291441 12291641 -269902023 - MIR SINE MIR -43 219 12 967 164 0 0 chr1 12291677 12291829 -269901835 - FRAM SINE Alu -11 165 14 686 255 117 35 chr1 12292502 12292879 -269900785 + L2 LINE L2 2370 2777 -537 237 247 39 13 chr1 12292879 12292956 -269900708 + L2 LINE L2 3231 3309 -4 1052 169 0 11 chr1 12293212 12293390 -269900274 - FRAM SINE Alu 0 176 1 411 183 0 0 chr1 12293825 12293907 -269899757 + (TG)n Simple_repeat Simple_repeat 1 82 0 420 244 326 4 chr1 12294937 12295179 -269898485 - L2 LINE L2 0 3313 2994 381 283 65 0 chr1 12295204 12295342 -269898322 - L1MA10 LINE L1 -8 6326 6180 308 283 17 8 chr1 12295358 12295478 -269898186 - L2 LINE L2 -328 2985 2865 191 247 212 0 chr1 12296131 12296216 -269897448 + MIR SINE MIR 30 132 -130 1701 184 10 0 chr1 12296219 12296512 -269897152 - AluJo SINE Alu -16 296 1 212 295 26 0 chr1 12296802 12296880 -269896784 + MIR3 SINE MIR 81 160 -48 704 241 42 0 chr1 12297067 12297233 -269896431 - MIR SINE MIR -65 197 25 318 241 177 35 chr1 12297327 12297468 -269896196 - MIR3 SINE MIR -31 177 17 199 333 16 62 chr1 12297814 12297943 -269895721 - MIR SINE MIR -20 242 120 1206 199 51 1 chr1 12297944 12298403 -269895261 + MLT1F LTR MaLR 24 567 0 195 158 26 0 chr1 12298405 12298443 -269895221 - MIR SINE MIR -92 116 78 618 282 138 0 chr1 12298525 12298720 -269894944 + MIR SINE MIR 29 250 -12 2217 113 3 3 chr1 12299097 12299407 -269894257 + AluSx SINE Alu 1 310 -2 348 261 100 39 chr1 12300471 12300601 -269893063 + MIR SINE MIR 125 262 0 980 289 52 95 chr1 12300776 12301315 -269892349 - L1ME LINE L1 -298 5823 5308 739 167 26 0 chr1 12301357 12301471 -269892193 - FLAM_C SINE Alu -15 118 2 182 289 72 24 chr1 12301495 12301578 -269892086 + MIR SINE MIR 21 107 -101 533 204 8 0 chr1 12302263 12302395 -269891269 + (TCCA)n Simple_repeat Simple_repeat 4 136 0 1416 65 0 2 chr1 12302418 12302777 -269890887 + (TCCA)n Simple_repeat Simple_repeat 1 539 0 1374 61 0 0 chr1 12302802 12303056 -269890608 + (TCCA)n Simple_repeat Simple_repeat 1 254 0 473 115 115 0 chr1 12305144 12305222 -269888442 - FRAM SINE Alu -16 160 74 2249 102 3 0 chr1 12305234 12305538 -269888126 - AluSq SINE Alu -8 305 1 24 32 0 0 chr1 12305548 12305579 -269888085 + AT_rich Low_complexity Low_complexity 1 31 0 604 334 37 40 chr1 12305656 12306317 -269887347 - L1ME4a LINE L1 -86 6035 5383 2102 114 3 0 chr1 12306510 12306808 -269886856 - AluSx SINE Alu -13 299 1 2146 103 7 0 chr1 12306812 12307104 -269886560 - AluSx SINE Alu -14 298 5 1851 120 53 7 chr1 12307562 12307845 -269885819 + AluSg SINE Alu 1 296 -14 21 0 0 0 chr1 12308047 12308068 -269885596 + GC_rich Low_complexity Low_complexity 1 21 0 216 253 23 81 chr1 12308491 12308578 -269885086 - MIR SINE MIR -62 146 65 463 317 174 17 chr1 12308899 12309018 -269884646 - L3 LINE CR1 -104 1473 1374 2388 84 0 3 chr1 12309018 12309326 -269884338 - AluSg SINE Alu -3 307 1 2258 97 7 3 chr1 12309326 12309635 -269884029 - AluSq SINE Alu -3 310 1 463 317 174 17 chr1 12309635 12309807 -269883857 - L3 LINE CR1 -202 1375 1135 596 271 229 32 chr1 12309808 12310380 -269883284 - L2 LINE L2 0 3313 2596 1974 69 4 15 chr1 12310398 12310659 -269883005 - AluY SINE Alu -4 307 50 746 143 17 8 chr1 12310660 12310779 -269882885 - AluJo/FLAM SINE Alu -192 120 1 331 352 137 7 chr1 12310780 12311050 -269882614 - L2 LINE L2 -774 2540 2236 662 262 79 12 chr1 12311227 12311330 -269882334 - MLT1D LTR MaLR 0 505 410 1898 141 4 0 chr1 12311330 12311607 -269882057 + AluSx SINE Alu 18 295 -17 662 262 79 12 chr1 12311607 12311751 -269881913 - MLT1D LTR MaLR -95 410 216 1722 96 4 0 chr1 12311783 12312012 -269881652 - AluSq SINE Alu -78 235 6 994 102 0 0 chr1 12312013 12312141 -269881523 - AluSq/x SINE Alu -175 138 11 880 207 46 50 chr1 12312149 12312410 -269881254 + MIR SINE MIR 1 260 -2 205 359 11 38 chr1 12312421 12312605 -269881059 - L2 LINE L2 -50 3222 3044 1380 143 120 23 chr1 12313160 12313442 -269880222 + AluJb SINE Alu 1 307 0 432 149 32 0 chr1 12313591 12313685 -269879979 + CT-rich Low_complexity Low_complexity 3 99 0 2165 118 0 6 chr1 12313736 12314050 -269879614 - AluSx SINE Alu 0 312 1 2229 114 0 0 chr1 12314428 12314734 -269878930 - AluSx SINE Alu -6 306 1 958 172 7 0 chr1 12314932 12315109 -269878555 - AluJo/FRAM SINE Alu 0 309 132 344 118 17 17 chr1 12315112 12315182 -269878482 + AluS SINE Alu 1 57 -246 2143 136 0 0 chr1 12315338 12315648 -269878016 + AluSx SINE Alu 1 310 -2 2053 119 20 0 chr1 12315809 12316102 -269877562 - AluSx SINE Alu -13 299 1 1982 117 7 17 chr1 12316984 12317282 -269876382 - AluSx SINE Alu -17 295 1 232 293 98 0 chr1 12317388 12317470 -269876194 + MIR SINE MIR 86 175 -87 2134 83 0 28 chr1 12317515 12317861 -269875803 + AluSg SINE Alu 1 338 0 637 204 161 0 chr1 12317955 12318117 -269875547 + MER5A DNA MER1_type 1 188 -1 518 312 15 30 chr1 12318254 12318456 -269875208 + MIR SINE MIR 11 209 -53 206 208 19 0 chr1 12319565 12319618 -269874046 + CT-rich Low_complexity Low_complexity 2 55 0 623 283 24 0 chr1 12319677 12319843 -269873821 + MIR SINE MIR 56 225 -37 230 307 53 0 chr1 12320285 12320393 -269873271 - MIR SINE MIR -61 147 31 213 39 0 0 chr1 12320815 12320841 -269872823 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 469 342 64 0 chr1 12321395 12321582 -269872082 - MIR SINE MIR -7 255 57 884 188 172 0 chr1 12321610 12321796 -269871868 - MER20 DNA MER1_type -1 218 1 2318 88 0 0 chr1 12321804 12322109 -269871555 - AluSg SINE Alu -5 305 1 1591 272 79 11 chr1 12322250 12322871 -269870793 - L1MC4 LINE L1 -142 7900 7238 2076 117 0 19 chr1 12322871 12323187 -269870477 - AluSx SINE Alu -2 310 1 1129 196 45 11 chr1 12323198 12323464 -269870200 - L1MC4 LINE L1 -954 7088 6814 29 0 0 0 chr1 12324108 12324137 -269869527 + AT_rich Low_complexity Low_complexity 1 29 0 2086 117 0 0 chr1 12324144 12324456 -269869208 + AluSx SINE Alu 1 312 0 1655 141 65 10 chr1 12324472 12324762 -269868902 - AluJo SINE Alu -6 306 1 2240 100 0 0 chr1 12324770 12325060 -269868604 - AluSg SINE Alu -20 290 1 1879 205 58 25 chr1 12325065 12325524 -269868140 - L1MC3 LINE L1 -21 7764 7287 2302 104 0 0 chr1 12325524 12325832 -269867832 + AluSx SINE Alu 1 308 -4 1879 205 58 25 chr1 12325832 12325851 -269867813 - L1MC3 LINE L1 -498 7287 7270 305 326 38 15 chr1 12325856 12325988 -269867676 - MIR SINE MIR -55 207 73 355 316 97 7 chr1 12326007 12326162 -269867502 - L1ME LINE L1 -352 5769 5601 261 283 171 13 chr1 12326276 12326428 -269867236 + MARNA DNA Mariner 217 392 -194 2506 57 0 0 chr1 12326430 12326730 -269866934 + AluSc SINE Alu 1 300 -9 2070 102 46 0 chr1 12326738 12327021 -269866643 + AluSx SINE Alu 1 296 -16 2192 108 0 7 chr1 12328001 12328308 -269865356 + AluSg SINE Alu 1 305 -5 2087 130 0 3 chr1 12329336 12329637 -269864027 + AluSx SINE Alu 1 300 -12 1688 32 0 28 chr1 12329855 12330072 -269863592 - SVA Other Other 0 1386 1176 26 30 0 0 chr1 12330269 12330302 -269863362 + AT_rich Low_complexity Low_complexity 1 33 0 252 77 0 0 chr1 12330510 12330549 -269863115 + (T)n Simple_repeat Simple_repeat 1 39 0 21 0 0 0 chr1 12330558 12330579 -269863085 + AT_rich Low_complexity Low_complexity 1 21 0 875 272 46 13 chr1 12330758 12330997 -269862667 + MIR SINE MIR 14 260 -2 224 359 39 0 chr1 12331555 12331633 -269862031 + MIR SINE MIR 132 212 -50 426 300 47 13 chr1 12331744 12331952 -269861712 - MIR3 SINE MIR -36 226 7 304 375 54 41 chr1 12332041 12332574 -269861090 + L2 LINE L2 2621 3180 -92 1280 123 0 11 chr1 12332719 12332906 -269860758 - AluSx SINE Alu -127 185 1 501 206 19 9 chr1 12334582 12334689 -269858975 + MER81 DNA DNA 5 112 -2 342 338 37 22 chr1 12334770 12334906 -269858758 + MIR SINE MIR 77 214 -48 537 327 111 30 chr1 12337217 12337468 -269856196 - L3 LINE CR1 -9 1568 1282 2332 85 0 10 chr1 12337468 12337773 -269855891 + AluSq SINE Alu 1 302 -11 537 327 111 30 chr1 12337773 12337854 -269855810 - L3 LINE CR1 -295 1282 1209 492 271 25 0 chr1 12339164 12339286 -269854378 + MIR SINE MIR 51 175 -87 290 341 166 12 chr1 12339720 12340051 -269853613 - L2 LINE L2 -96 3217 2836 2210 122 0 0 chr1 12340688 12340991 -269852673 + AluSx SINE Alu 1 303 -9 294 374 8 8 chr1 12341164 12341295 -269852369 - MIR SINE MIR -117 145 15 184 263 66 102 chr1 12341354 12341491 -269852173 - MIR SINE MIR -48 214 83 1892 131 7 17 chr1 12341615 12341913 -269851751 - AluJo SINE Alu 0 312 18 349 259 0 0 chr1 12342057 12342138 -269851526 - MIR3 SINE MIR -43 165 85 787 206 18 6 chr1 12342376 12342546 -269851118 + MER45A DNA AcHobo 7 178 0 670 272 111 17 chr1 12342693 12343116 -269850548 - MLT1G1 LTR MaLR 0 595 72 199 260 0 20 chr1 12343251 12343301 -269850363 - MIR SINE MIR -197 65 17 190 316 103 17 chr1 12343747 12343864 -269849800 - L2 LINE L2 -5 3267 3141 816 282 32 0 chr1 12343864 12344084 -269849580 - MIR SINE MIR -34 228 2 416 238 21 63 chr1 12344622 12344765 -269848899 - L2 LINE L2 -2 3270 3134 355 225 0 0 chr1 12344863 12344934 -269848730 + MIR SINE MIR 117 187 -75 203 262 180 0 chr1 12344942 12345003 -269848661 - L2 LINE L2 0 3313 3242 728 257 76 34 chr1 12345565 12345802 -269847862 - MIR SINE MIR -12 250 4 338 297 42 8 chr1 12346737 12346855 -269846809 - MIR3 SINE MIR -46 162 41 1902 155 0 19 chr1 12346963 12347273 -269846391 + AluSx SINE Alu 1 304 -8 327 254 41 49 chr1 12347285 12347407 -269846257 - L1ME4a LINE L1 -72 6049 5929 2414 53 0 38 chr1 12347407 12347727 -269845937 - AluY SINE Alu -3 308 1 539 310 125 34 chr1 12348720 12348906 -269844758 + L1ME LINE L1 4456 4624 -1522 2237 87 3 7 chr1 12348906 12349205 -269844459 + AluSc SINE Alu 1 298 -11 539 310 125 34 chr1 12349205 12349570 -269844094 + L1ME LINE L1 4624 5057 -1089 2142 141 0 0 chr1 12349572 12349884 -269843780 + AluJb SINE Alu 1 312 0 540 297 23 76 chr1 12349933 12350599 -269843065 + L1M3 LINE L1 4890 5518 -665 297 330 28 65 chr1 12351496 12351820 -269841844 + L1ME LINE L1 5469 5780 -382 2298 70 0 7 chr1 12352215 12352516 -269841148 + AluSg SINE Alu 1 299 -11 1206 112 0 0 chr1 12352520 12352681 -269840983 + AluSg/x SINE Alu 136 296 -14 937 274 161 13 chr1 12352699 12353089 -269840575 - L2 LINE L2 -3 3310 2863 24 32 0 0 chr1 12353153 12353184 -269840480 + AT_rich Low_complexity Low_complexity 1 31 0 721 185 37 0 chr1 12353226 12353361 -269840303 + FLAM_C SINE Alu 1 140 -3 1972 113 0 35 chr1 12353396 12353707 -269839957 + AluSx SINE Alu 1 300 -12 1959 145 14 0 chr1 12353707 12353997 -269839667 + AluJb SINE Alu 1 294 -18 381 238 31 31 chr1 12354241 12354279 -269839385 - MIR3 SINE MIR -12 196 160 499 304 71 0 chr1 12354279 12354463 -269839201 - MER117 DNA MER1_type 0 197 1 381 238 31 31 chr1 12354463 12354578 -269839086 - MIR3 SINE MIR -48 160 42 381 269 162 9 chr1 12355327 12355475 -269838189 + MER5A DNA MER1_type 7 188 -1 197 268 0 0 chr1 12355494 12355535 -269838129 + L2 LINE L2 3263 3303 -10 225 0 0 0 chr1 12355930 12355955 -269837709 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 290 340 33 26 chr1 12356413 12356566 -269837098 - L2 LINE L2 -200 3072 2919 857 180 9 68 chr1 12356728 12356950 -269836714 - MER20 DNA MER1_type -4 215 7 360 210 50 50 chr1 12357481 12357581 -269836083 + L2 LINE L2 3194 3293 -20 207 333 38 38 chr1 12358181 12358313 -269835351 - L2 LINE L2 -883 2431 2300 204 206 0 0 chr1 12359225 12359259 -269834405 - MIR SINE MIR -200 62 29 1540 113 106 68 chr1 12359265 12359558 -269834106 + AluJo SINE Alu 1 304 -8 23 33 0 0 chr1 12359884 12359914 -269833750 + GC_rich Low_complexity Low_complexity 1 30 0 194 339 108 15 chr1 12361658 12361853 -269831811 + L2 LINE L2 2546 2758 -556 375 291 112 63 chr1 12362266 12362489 -269831175 - MIR SINE MIR -13 249 16 189 0 0 0 chr1 12363136 12363157 -269830507 + (TTCA)n Simple_repeat Simple_repeat 2 22 0 1917 129 0 42 chr1 12363625 12363936 -269829728 - AluSx SINE Alu -14 298 1 2088 121 0 34 chr1 12363951 12364274 -269829390 - AluSx SINE Alu 0 312 1 627 284 191 34 chr1 12364296 12364603 -269829061 + L2 LINE L2 2890 3262 -51 922 189 122 10 chr1 12364603 12364799 -269828865 - MER20 DNA MER1_type -1 218 1 627 284 191 34 chr1 12364799 12364846 -269828818 + L2 LINE L2 3262 3300 -13 524 266 76 6 chr1 12365230 12365388 -269828276 + MIR SINE MIR 20 188 -74 490 314 0 7 chr1 12366020 12366160 -269827504 + MIR3 SINE MIR 3 141 -67 1140 49 0 0 chr1 12367085 12367228 -269826436 + (TTCTCC)n Simple_repeat Simple_repeat 3 145 0 2178 96 0 0 chr1 12367228 12367508 -269826156 - AluSx SINE Alu -32 280 1 299 321 66 0 chr1 12368165 12368302 -269825362 + MIR3 SINE MIR 30 175 -33 2118 97 0 14 chr1 12368893 12369206 -269824458 + AluSx SINE Alu 1 309 0 527 301 42 67 chr1 12369353 12369592 -269824072 - MIR SINE MIR -21 241 9 315 319 145 0 chr1 12369619 12369757 -269823907 - L2 LINE L2 -557 2757 2600 2121 106 0 13 chr1 12369965 12370267 -269823397 - AluSq SINE Alu -15 298 1 1027 114 0 0 chr1 12370636 12370776 -269822888 + AluSg/x SINE Alu 163 302 -8 505 291 73 55 chr1 12370777 12370997 -269822667 - MIR SINE MIR -8 254 31 401 317 41 0 chr1 12371274 12371397 -269822267 - MIR SINE MIR -17 245 118 249 317 85 0 chr1 12372011 12372093 -269821571 + L2 LINE L2 3143 3231 -41 294 260 104 15 chr1 12372526 12372651 -269821013 + MIR3 SINE MIR 29 160 -48 517 303 79 22 chr1 12372652 12372880 -269820784 + MIR SINE MIR 1 241 -21 886 124 0 29 chr1 12373108 12373245 -269820419 + FLAM_C SINE Alu 1 133 0 253 311 0 48 chr1 12374379 12374482 -269819182 - MIR SINE MIR -74 188 91 286 206 8 13 chr1 12374908 12374985 -269818679 - MIR3 SINE MIR -38 170 92 349 331 21 21 chr1 12375101 12375246 -269818418 + MIR SINE MIR 108 252 -10 343 340 80 25 chr1 12375357 12375519 -269818145 + L2 LINE L2 3106 3276 -37 268 319 175 9 chr1 12375501 12375523 -269818141 + MIR SINE MIR 32 49 -213 * 189 0 0 0 chr1 12375523 12375544 -269818120 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 268 319 175 9 chr1 12375544 12375711 -269817953 + MIR SINE MIR 49 251 -11 243 311 35 0 chr1 12376244 12376353 -269817311 + MIR SINE MIR 54 166 -63 359 337 72 28 chr1 12376355 12376407 -269817257 - L1M4 LINE L1 -2769 3377 3329 243 0 0 0 chr1 12376407 12376434 -269817230 + (TC)n Simple_repeat Simple_repeat 2 28 0 359 337 72 28 chr1 12376434 12376630 -269817034 - L1M4 LINE L1 -2817 3329 3118 1218 55 0 16 chr1 12376631 12376814 -269816850 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 210 303 84 35 chr1 12378927 12379069 -269814595 - L2 LINE L2 -220 3052 2904 418 288 41 34 chr1 12379457 12379603 -269814061 - MIR SINE MIR -101 161 15 2064 123 3 16 chr1 12380097 12380413 -269813251 - AluSx SINE Alu 0 312 1 509 276 11 44 chr1 12380463 12380644 -269813020 + MIR SINE MIR 8 182 -80 795 194 152 9 chr1 12380664 12380875 -269812789 - LTR16A1 LTR ERVL 0 457 217 296 235 31 41 chr1 12380865 12380963 -269812701 - LTR16A1 LTR ERVL -358 99 3 * 246 196 0 0 chr1 12380976 12381022 -269812642 + MIR SINE MIR 205 250 -12 205 326 99 7 chr1 12381244 12381385 -269812279 - L2 LINE L2 -153 3119 2966 544 211 13 39 chr1 12381975 12382131 -269811533 + L2 LINE L2 2910 3061 -211 214 174 139 35 chr1 12382139 12382225 -269811439 - L2 LINE L2 -179 3093 2999 347 242 133 8 chr1 12382310 12382430 -269811234 + L2 LINE L2 3138 3272 0 1311 283 102 1 chr1 12382530 12383050 -269810614 - L2 LINE L2 -4 3309 2732 1835 114 4 4 chr1 12383177 12383441 -269810223 + AluSx SINE Alu 41 304 -8 225 211 0 135 chr1 12384333 12384489 -269809175 + (CGGGG)n Simple_repeat Simple_repeat 2 136 0 318 153 0 0 chr1 12385209 12385268 -269808396 + (TG)n Simple_repeat Simple_repeat 2 60 0 217 250 0 0 chr1 12386074 12386130 -269807534 + CT-rich Low_complexity Low_complexity 1 56 0 1557 163 21 18 chr1 12386251 12386558 -269807106 + AluJo SINE Alu 1 308 0 233 321 74 74 chr1 12387018 12387314 -269806350 - L2 LINE L2 0 3272 2977 504 264 78 86 chr1 12388236 12388622 -269805042 - MLT1J LTR MaLR -19 492 110 277 214 18 0 chr1 12388583 12388639 -269805025 - LTR67 LTR ERVL -404 153 97 * 599 172 0 0 chr1 12388861 12388960 -269804704 + FLAM_C SINE Alu 41 139 -4 2274 83 7 0 chr1 12388979 12389269 -269804395 + AluSx SINE Alu 1 292 -20 933 119 0 15 chr1 12389269 12389403 -269804261 - AluJo/FLAM SINE Alu -170 132 1 465 177 21 135 chr1 12389480 12389672 -269803992 - MLT1D LTR MaLR -274 231 62 2350 129 131 32 chr1 12389742 12390105 -269803559 + LTR19A LTR ERV1 1 417 -69 2349 93 3 0 chr1 12390105 12390417 -269803247 - AluSp SINE Alu 0 313 1 2350 129 131 32 chr1 12390417 12390495 -269803169 + LTR19A LTR ERV1 417 486 0 1469 146 94 26 chr1 12390974 12391241 -269802423 - AluJb SINE Alu -27 285 1 1493 224 24 15 chr1 12391277 12391617 -269802047 + MLT1E2 LTR MaLR 107 449 -177 252 308 92 23 chr1 12391629 12391759 -269801905 - L2 LINE L2 -197 3075 2937 710 128 29 0 chr1 12391900 12392002 -269801662 - U6 snRNA snRNA -2 105 1 2186 112 0 3 chr1 12392299 12392602 -269801062 + AluSx SINE Alu 1 302 -10 405 234 38 13 chr1 12392673 12392790 -269800874 + MIR SINE MIR 25 145 -63 349 213 291 0 chr1 12392879 12393006 -269800658 - MER5A DNA MER1_type -16 173 10 2180 118 0 6 chr1 12393952 12394266 -269799398 - AluSx SINE Alu 0 312 1 2123 109 0 7 chr1 12394575 12394877 -269798787 - AluSq SINE Alu -13 300 1 460 143 12 0 chr1 12394958 12395042 -269798622 + MIR SINE MIR 66 150 -58 255 104 31 62 chr1 12395980 12396076 -269797588 + CT-rich Low_complexity Low_complexity 4 96 0 1883 149 3 16 chr1 12396281 12396597 -269797067 + AluJb SINE Alu 1 312 0 2867 263 59 17 chr1 12396641 12397424 -269796240 + L1ME3A LINE L1 4942 5797 -373 1930 160 7 0 chr1 12397424 12397724 -269795940 + AluSx SINE Alu 1 302 -10 2867 263 59 17 chr1 12397724 12398104 -269795560 + L1ME3A LINE L1 5797 6160 -10 366 234 307 0 chr1 12398142 12398360 -269795304 - L2 LINE L2 -675 2639 2355 385 270 103 107 chr1 12398827 12399060 -269794604 - MIR SINE MIR -14 248 17 2295 103 3 0 chr1 12399115 12399427 -269794237 - AluSq SINE Alu 0 313 1 803 156 0 43 chr1 12399427 12399568 -269794096 - AluJo SINE Alu -176 136 2 263 232 0 10 chr1 12400460 12400559 -269793105 + (CCCA)n Simple_repeat Simple_repeat 2 99 0 243 266 9 37 chr1 12400572 12400613 -269793051 + (TCCA)n Simple_repeat Simple_repeat 3 44 -64 1760 172 36 21 chr1 12400613 12400997 -269792667 - MLT1B LTR MaLR 0 390 1 243 266 9 37 chr1 12400997 12401064 -269792600 + (TCCA)n Simple_repeat Simple_repeat 44 108 0 542 15 15 0 chr1 12401089 12401156 -269792508 + (TCCA)n Simple_repeat Simple_repeat 1 68 0 2104 138 0 0 chr1 12401173 12401485 -269792179 - AluSx SINE Alu 0 312 1 328 313 9 9 chr1 12402152 12402264 -269791400 - L3 LINE CR1 -36 1541 1430 347 283 170 35 chr1 12402275 12402505 -269791159 - MIR SINE MIR 0 262 2 304 167 0 0 chr1 12403079 12403133 -269790531 + Alu SINE Alu 248 301 -1 333 219 10 52 chr1 12403256 12403352 -269790312 + L2 LINE L2 3222 3313 0 679 187 12 18 chr1 12403815 12403986 -269789678 + (TCCA)n Simple_repeat Simple_repeat 1 170 0 784 201 8 19 chr1 12404006 12404664 -269789000 + (TCCA)n Simple_repeat Simple_repeat 1 650 0 1182 216 131 21 chr1 12404810 12404841 -269788823 - LTR16C LTR ERVL 0 491 465 2127 171 26 28 chr1 12404841 12405232 -269788432 + MLT1B LTR MaLR 1 390 0 1182 216 131 21 chr1 12405232 12405529 -269788135 - LTR16C LTR ERVL -26 465 127 956 218 94 71 chr1 12405700 12405756 -269787908 - MLT1B LTR MaLR 0 390 337 2272 131 12 6 chr1 12405756 12406091 -269787573 - MER1B DNA MER1_type 0 337 1 956 218 94 71 chr1 12406091 12406206 -269787458 - MLT1B LTR MaLR -53 337 226 1578 171 25 4 chr1 12406206 12406487 -269787177 - AluJo SINE Alu -22 290 4 956 218 94 71 chr1 12406487 12406513 -269787151 - MLT1B LTR MaLR -164 226 202 2425 70 0 3 chr1 12406513 12406825 -269786839 - AluY SINE Alu 0 311 1 2225 98 3 0 chr1 12406825 12407122 -269786542 - AluSx SINE Alu -14 298 1 956 218 94 71 chr1 12407122 12407302 -269786362 - MLT1B LTR MaLR -187 203 1 1677 135 0 0 chr1 12407562 12407806 -269785858 - AluSx SINE Alu -16 296 53 2047 102 41 3 chr1 12407806 12408099 -269785565 + AluY SINE Alu 1 304 -7 449 70 0 0 chr1 12408099 12408156 -269785508 - AluSx SINE Alu -250 60 4 391 231 148 29 chr1 12408285 12408576 -269785088 - L2 LINE L2 -225 3047 2699 2393 87 0 0 chr1 12408630 12408942 -269784722 - AluSx SINE Alu 0 312 1 1323 242 92 38 chr1 12408985 12409304 -269784360 + Charlie4a DNA MER1_type 1 356 -1605 2364 77 0 0 chr1 12409304 12409604 -269784060 - AluSq SINE Alu -13 300 1 1323 242 92 38 chr1 12409604 12409764 -269783900 + Charlie4a DNA MER1_type 356 506 -2 980 263 80 40 chr1 12409766 12410262 -269783402 - MLT1K LTR MaLR -11 577 133 1194 130 24 93 chr1 12410324 12410571 -269783093 + MER30 DNA MER1_type 1 230 0 339 293 8 73 chr1 12410643 12410766 -269782898 - MIR SINE MIR -1 261 147 539 268 49 18 chr1 12411476 12411640 -269782024 - MIR SINE MIR -74 188 20 526 285 53 51 chr1 12411780 12412215 -269781449 - L1M4 LINE L1 -3385 2761 2326 1567 254 69 73 chr1 12412348 12413159 -269780505 - HAL1b LINE L1 -7 1341 534 2088 123 20 0 chr1 12413159 12413460 -269780204 - AluSx SINE Alu -5 307 1 670 209 8 22 chr1 12413463 12413597 -269780067 - FLAM_A SINE Alu -1 132 1 325 315 51 73 chr1 12413602 12413635 -269780029 - HAL1 LINE L1 -1508 999 967 7091 134 41 31 chr1 12413635 12413902 -269779762 - Tigger3b DNA MER2_type -1798 1230 967 2174 118 0 6 chr1 12413902 12414216 -269779448 + AluSx SINE Alu 1 312 0 7091 134 41 31 chr1 12414216 12414690 -269778974 - Tigger3b DNA MER2_type -2061 967 499 2268 106 0 0 chr1 12414690 12414991 -269778673 + AluSx SINE Alu 1 301 -11 7091 134 41 31 chr1 12414991 12415159 -269778505 - Tigger3b DNA MER2_type -2529 499 334 1870 148 3 7 chr1 12415159 12415463 -269778201 + AluJb SINE Alu 1 303 -9 7091 134 41 31 chr1 12415463 12415690 -269777974 - Tigger3b DNA MER2_type -2694 334 77 2148 87 30 10 chr1 12415690 12415990 -269777674 - AluSx SINE Alu -6 306 1 7091 134 41 31 chr1 12415990 12416065 -269777599 - Tigger3b DNA MER2_type -2951 77 4 325 315 51 73 chr1 12416065 12416209 -269777455 - HAL1 LINE L1 -1540 967 826 2046 113 0 0 chr1 12416536 12416841 -269776823 - AluSx SINE Alu 0 305 1 1068 226 47 7 chr1 12416841 12417097 -269776567 - L1MC/D LINE L1 -676 5508 5264 2174 77 35 3 chr1 12417097 12417383 -269776281 + AluSx SINE Alu 1 295 -17 2760 148 24 38 chr1 12417383 12417493 -269776171 - L1MC2 LINE L1 -11 6333 6223 1806 108 6 79 chr1 12417493 12417808 -269775856 - AluJb SINE Alu -20 292 1 2760 148 24 38 chr1 12417808 12418198 -269775466 - L1MC2 LINE L1 -121 6223 5840 1068 226 47 7 chr1 12418198 12418233 -269775431 - L1MC/D LINE L1 -919 5265 5265 282 87 0 0 chr1 12419543 12419589 -269774075 + (TC)n Simple_repeat Simple_repeat 2 47 0 225 0 0 0 chr1 12419589 12419614 -269774050 + (CA)n Simple_repeat Simple_repeat 1 25 0 2214 114 0 3 chr1 12419671 12419979 -269773685 + AluSq SINE Alu 1 307 -6 923 206 28 0 chr1 12419981 12420161 -269773503 - L1MDa LINE L1 -6340 200 16 607 328 66 43 chr1 12420181 12420620 -269773044 + L2 LINE L2 2819 3267 -5 253 290 123 45 chr1 12420737 12420892 -269772772 + MIR3 SINE MIR 14 180 -28 1234 179 94 55 chr1 12421067 12421128 -269772536 + MER33 DNA MER1_type 5 62 -2523 2163 121 0 13 chr1 12421128 12421441 -269772223 + AluSx SINE Alu 1 309 -3 1234 179 94 55 chr1 12421441 12421687 -269771977 + MER33 DNA MER1_type 62 324 0 334 323 44 6 chr1 12421826 12421984 -269771680 - MIR SINE MIR -35 227 64 2209 103 0 3 chr1 12422090 12422392 -269771272 - AluSg SINE Alu -8 302 2 240 359 39 0 chr1 12422449 12422552 -269771112 - MIR SINE MIR -21 241 135 2007 98 29 0 chr1 12422554 12422855 -269770809 + AluSx SINE Alu 1 309 0 354 197 239 51 chr1 12422950 12423067 -269770597 - MLT1K LTR MaLR -1 587 449 624 289 39 19 chr1 12423240 12423448 -269770216 - MLT1K LTR MaLR -355 233 22 190 319 33 11 chr1 12423837 12423928 -269769736 - L2 LINE L2 -24 3289 3197 2389 62 3 10 chr1 12424611 12424916 -269768748 - AluSq SINE Alu -10 303 1 448 232 159 0 chr1 12424919 12425070 -269768594 - L1ME LINE L1 -347 5819 5645 2214 96 3 6 chr1 12425185 12425497 -269768167 - AluSx SINE Alu -1 311 1 437 288 125 0 chr1 12426218 12426378 -269767286 - MIR SINE MIR -70 192 13 1576 188 10 29 chr1 12426402 12426711 -269766953 - AluJb SINE Alu -9 303 1 839 241 74 14 chr1 12427016 12427334 -269766330 - MLT1G LTR MaLR 0 590 167 1016 98 0 0 chr1 12427355 12427488 -269766176 - AluSq/x SINE Alu -180 133 1 891 141 0 0 chr1 12427499 12427693 -269765971 + (GA)n Simple_repeat Simple_repeat 1 194 0 396 167 0 0 chr1 12427694 12427790 -269765874 + GA-rich Low_complexity Low_complexity 2 97 0 480 269 79 34 chr1 12427790 12428012 -269765652 - MLT1G1 LTR MaLR -370 206 1 823 248 26 43 chr1 12428112 12428342 -269765322 + MIR SINE MIR 12 237 -25 2322 87 0 10 chr1 12428710 12429022 -269764642 - AluSg SINE Alu -1 309 1 331 285 53 33 chr1 12429030 12429181 -269764483 - L1MC5 LINE L1 -36 7925 7772 323 286 9 0 chr1 12429178 12429283 -269764381 - L1MA10 LINE L1 0 6334 6229 * 237 225 14 14 chr1 12429363 12429434 -269764230 - L1ME LINE L1 -237 5927 5857 2084 112 3 0 chr1 12430001 12430296 -269763368 - AluSp SINE Alu -17 296 1 2140 95 7 3 chr1 12430534 12430830 -269762834 + AluSq SINE Alu 1 297 -16 2184 117 0 0 chr1 12431091 12431399 -269762265 - AluSx SINE Alu -4 308 1 1837 197 8 16 chr1 12431710 12432096 -269761568 - L1PB4 LINE L1 0 6156 5774 2234 96 0 0 chr1 12432135 12432427 -269761237 - AluSx SINE Alu -20 292 1 263 286 30 75 chr1 12432557 12432690 -269760974 + HAL1 LINE L1 945 1071 -1436 405 248 81 43 chr1 12432691 12432852 -269760812 + LTR41 LTR ERVL 1 167 -606 2231 79 0 3 chr1 12432859 12433180 -269760484 - AluSg SINE Alu 0 320 1 466 205 25 10 chr1 12433474 12433605 -269760059 - L1ME LINE L1 -374 5790 5652 944 184 5 5 chr1 12433608 12433793 -269759871 - AluJo SINE Alu -2 310 126 380 195 25 14 chr1 12433793 12433904 -269759760 - L1M4 LINE L1 -482 5684 5579 650 274 159 26 chr1 12434090 12434517 -269759147 + HAL1 LINE L1 1596 2079 -428 1753 236 72 9 chr1 12435728 12436160 -269757504 + L1ME1 LINE L1 5618 6076 -90 905 150 0 0 chr1 12436174 12436307 -269757357 - AluSx SINE Alu -138 174 42 559 216 12 37 chr1 12436446 12436608 -269757056 + L2 LINE L2 2910 3067 -205 205 167 156 33 chr1 12436606 12436696 -269756968 - L2 LINE L2 -173 3099 2999 * 347 242 133 8 chr1 12436781 12436901 -269756763 + L2 LINE L2 3138 3272 0 1326 286 102 1 chr1 12437001 12437521 -269756143 - L2 LINE L2 -4 3309 2732 1885 108 4 4 chr1 12437648 12437916 -269755748 + AluSx SINE Alu 41 308 -4 225 211 0 135 chr1 12438808 12438964 -269754700 + (CGGGG)n Simple_repeat Simple_repeat 2 136 0 372 138 0 0 chr1 12439684 12439749 -269753915 + (TG)n Simple_repeat Simple_repeat 2 66 0 217 250 0 0 chr1 12440555 12440611 -269753053 + CT-rich Low_complexity Low_complexity 1 56 0 1557 163 21 18 chr1 12440732 12441039 -269752625 + AluJo SINE Alu 1 308 0 233 321 74 74 chr1 12441499 12441795 -269751869 - L2 LINE L2 0 3272 2977 504 264 78 86 chr1 12442717 12443103 -269750561 - MLT1J LTR MaLR -19 492 110 277 214 18 0 chr1 12443064 12443120 -269750544 - LTR67 LTR ERVL -404 153 97 * 599 172 0 0 chr1 12443342 12443441 -269750223 + FLAM_C SINE Alu 41 139 -4 2081 125 0 0 chr1 12443460 12443778 -269749886 + AluSx SINE Alu 1 318 0 802 175 81 6 chr1 12443783 12443943 -269749721 - MER20 DNA MER1_type -47 172 1 244 279 47 23 chr1 12444004 12444090 -269749574 - MIR SINE MIR -58 150 80 1997 138 23 0 chr1 12444384 12444689 -269748975 - AluSx SINE Alu 0 312 1 561 226 23 45 chr1 12444766 12444899 -269748765 + MER63A DNA MER1_type 36 165 -45 430 286 37 48 chr1 12444952 12445137 -269748527 - MIR SINE MIR -56 152 7 2393 54 10 0 chr1 12445285 12445583 -269748081 + AluY SINE Alu 1 301 -10 411 276 109 48 chr1 12445663 12445901 -269747763 - MIR SINE MIR -10 252 7 225 0 0 0 chr1 12446101 12446126 -269747538 + (GCTG)n Simple_repeat Simple_repeat 4 28 0 2339 75 0 10 chr1 12446128 12446434 -269747230 - AluY SINE Alu -8 303 1 197 202 67 67 chr1 12446843 12446932 -269746732 + MIR SINE MIR 43 131 -77 372 207 145 35 chr1 12447521 12447705 -269745959 + MIR SINE MIR 50 260 -2 996 216 27 61 chr1 12447848 12448066 -269745598 - MER58B DNA MER1_type -2079 341 117 2115 98 7 0 chr1 12448066 12448362 -269745302 - AluSp SINE Alu -15 298 1 996 216 27 61 chr1 12448362 12448416 -269745248 - MER58B DNA MER1_type -2303 117 77 1794 161 0 25 chr1 12448416 12448732 -269744932 + AluJo SINE Alu 5 312 0 996 216 27 61 chr1 12448732 12448755 -269744909 - MER58B DNA MER1_type -2343 77 55 1080 236 20 20 chr1 12448790 12449040 -269744624 - MIR SINE MIR -5 257 8 819 285 31 0 chr1 12450086 12450314 -269743350 - MIR SINE MIR 0 262 28 188 415 51 0 chr1 12450610 12450728 -269742936 + MIR SINE MIR 58 181 -81 197 250 50 0 chr1 12451048 12451108 -269742556 + L2 LINE L2 3251 3313 0 1885 128 3 40 chr1 12451167 12451471 -269742193 - AluSx SINE Alu -19 293 1 375 196 0 54 chr1 12452129 12452221 -269741443 - Charlie8 DNA MER1_type -2256 161 75 240 35 0 0 chr1 12452229 12452258 -269741406 + (CCA)n Simple_repeat Simple_repeat 1 29 0 558 263 142 68 chr1 12452282 12452334 -269741330 - L2 LINE L2 -49 3223 3176 946 103 0 22 chr1 12452334 12452470 -269741194 + FLAM_C SINE Alu 1 133 0 558 263 142 68 chr1 12452470 12453059 -269740605 - L2 LINE L2 -96 3176 2512 2107 107 3 19 chr1 12453059 12453369 -269740295 - AluSq SINE Alu -8 305 1 558 263 142 68 chr1 12453369 12453544 -269740120 - L2 LINE L2 -760 2512 2351 1302 198 99 0 chr1 12453547 12453830 -269739834 + AluJb SINE Alu 1 311 -1 532 141 0 0 chr1 12453830 12453908 -269739756 - FLAM_A SINE Alu -31 111 34 444 187 132 9 chr1 12453959 12454093 -269739571 - MIR SINE MIR -63 145 15 279 0 0 0 chr1 12454801 12454832 -269738832 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2250 94 0 0 chr1 12455069 12455366 -269738298 + AluSx SINE Alu 1 297 -15 902 148 77 0 chr1 12456247 12456402 -269737262 + FRAM SINE Alu 1 161 -15 310 316 127 26 chr1 12456980 12457208 -269736456 - L2 LINE L2 -91 3181 2931 1299 164 0 5 chr1 12457210 12457429 -269736235 + AluSg/x SINE Alu 87 304 -8 327 257 193 12 chr1 12457485 12457656 -269736008 + L2 LINE L2 586 787 -2527 504 262 0 60 chr1 12457665 12457707 -269735957 - MER58B DNA MER1_type -2079 341 298 1201 196 98 18 chr1 12457707 12457983 -269735681 - AluJb SINE Alu -14 298 1 504 262 0 60 chr1 12457983 12458089 -269735575 - MER58B DNA MER1_type -2122 298 202 291 197 91 0 chr1 12458117 12458183 -269735481 + L2 LINE L2 790 861 -2453 316 328 105 61 chr1 12458183 12458420 -269735244 + L2 LINE L2 973 1227 -2087 1562 175 0 7 chr1 12458420 12458689 -269734975 + AluSx SINE Alu 1 267 -45 316 328 105 61 chr1 12458689 12458747 -269734917 + L2 LINE L2 1227 1281 -2033 1231 228 126 17 chr1 12458755 12459111 -269734553 - MLT1D LTR MaLR 0 505 111 2129 96 13 13 chr1 12459208 12459533 -269734131 - AluSx SINE Alu 0 312 1 860 212 0 0 chr1 12459567 12459718 -269733946 - FRAM SINE Alu -11 155 5 1105 245 114 8 chr1 12459722 12460081 -269733583 + L2 LINE L2 1297 1693 -1621 3617 167 24 36 chr1 12460082 12460422 -269733242 + L1MB3 LINE L1 5438 5781 -402 2354 89 0 0 chr1 12460422 12460725 -269732939 + AluSx SINE Alu 1 303 -9 3617 167 24 36 chr1 12460725 12461009 -269732655 + L1MB3 LINE L1 5781 6054 -129 1811 138 48 3 chr1 12461009 12461300 -269732364 + AluJo SINE Alu 1 304 -8 3617 167 24 36 chr1 12461300 12461398 -269732266 + L1MB3 LINE L1 6054 6152 -31 1969 82 4 0 chr1 12461447 12461702 -269731962 + AluSq SINE Alu 40 295 -18 1245 255 95 21 chr1 12461712 12462230 -269731434 + L2 LINE L2 1682 2237 -1077 383 280 91 7 chr1 12462768 12462911 -269730753 + LTR33 LTR ERVL 1 155 -366 * 1081 245 133 22 chr1 12462889 12463334 -269730330 + LTR1B LTR ERV1 7 482 -19 244 224 45 45 chr1 12463544 12463611 -269730053 + LTR33 LTR ERVL 153 219 -302 216 253 23 58 chr1 12463848 12463935 -269729729 + MIR SINE MIR 113 196 -66 737 117 5 203 chr1 12464382 12464552 -269729112 + AluJb SINE Alu 136 264 -48 2451 57 0 3 chr1 12464552 12464853 -269728811 - AluY SINE Alu -11 300 1 737 117 5 203 chr1 12464853 12464879 -269728785 + AluJb SINE Alu 264 293 -19 691 235 48 48 chr1 12464889 12465119 -269728545 + MIR SINE MIR 33 262 0 577 267 111 19 chr1 12465132 12465394 -269728270 - L2 LINE L2 -55 3258 2973 1956 133 31 0 chr1 12465449 12465743 -269727921 - AluSx SINE Alu -9 303 1 829 127 0 16 chr1 12465836 12465962 -269727702 + FLAM_C SINE Alu 3 126 -17 490 94 0 0 chr1 12465975 12466039 -269727625 + AluJ/FRAM SINE Alu 226 289 -23 196 304 0 43 chr1 12466074 12466143 -269727521 - MIR SINE MIR -71 191 126 323 276 57 32 chr1 12466355 12466478 -269727186 + MIR3 SINE MIR 31 156 -52 2276 110 0 0 chr1 12466506 12466816 -269726848 - AluY SINE Alu -1 310 1 1204 211 41 22 chr1 12466896 12467214 -269726450 + MER33 DNA MER1_type 1 324 0 381 227 108 59 chr1 12467258 12467461 -269726203 + L2 LINE L2 3061 3273 -40 1489 163 4 40 chr1 12467476 12467615 -269726049 + AluJo SINE Alu 10 136 -176 2114 100 24 0 chr1 12467615 12467904 -269725760 + AluSx SINE Alu 1 296 -16 1489 163 4 40 chr1 12467904 12468040 -269725624 + AluJo SINE Alu 136 275 -37 253 232 0 0 chr1 12468063 12468119 -269725545 + L2 LINE L2 3258 3313 0 216 0 0 0 chr1 12468141 12468165 -269725499 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 447 273 30 6 chr1 12468683 12468848 -269724816 - Charlie8 DNA MER1_type -2248 169 1 894 78 0 47 chr1 12469062 12469088 -269724576 - FLAM_C SINE Alu -179 133 107 2534 134 3 6 chr1 12469088 12469453 -269724211 - THE1B LTR MaLR 0 364 1 10528 114 48 2 chr1 12469453 12470535 -269723129 - THE1B-int LTR MaLR 0 1580 407 2356 76 0 16 chr1 12470535 12470850 -269722814 - AluY SINE Alu -1 310 1 10528 114 48 2 chr1 12470850 12471277 -269722387 - THE1B-int LTR MaLR -1173 407 1 2672 105 3 22 chr1 12471277 12471350 -269722314 - THE1B LTR MaLR 0 364 291 2124 117 10 0 chr1 12471350 12471650 -269722014 + AluSc SINE Alu 1 303 -6 2672 105 3 22 chr1 12471650 12471947 -269721717 - THE1B LTR MaLR -73 291 1 894 78 0 47 chr1 12471947 12472046 -269721618 - FLAM_C SINE Alu -202 110 12 1572 209 77 5 chr1 12472077 12472382 -269721282 - MER21B LTR ERV1 -52 811 470 2073 123 7 0 chr1 12472382 12472684 -269720980 - AluSg SINE Alu -6 304 1 1572 209 77 5 chr1 12472684 12472770 -269720894 - MER21B LTR ERV1 -393 470 392 2221 88 7 3 chr1 12472791 12473088 -269720576 - AluY SINE Alu -13 298 1 808 247 10 81 chr1 12473101 12473397 -269720267 - MER21B LTR ERV1 -573 290 16 2123 113 3 25 chr1 12473404 12473722 -269719942 + AluSx SINE Alu 1 311 -1 1156 155 43 31 chr1 12473722 12473849 -269719815 + L1MA7 LINE L1 6024 6148 -143 2478 30 0 7 chr1 12473849 12474147 -269719517 + AluY SINE Alu 1 296 -15 1156 155 43 31 chr1 12474147 12474277 -269719387 + L1MA7 LINE L1 6148 6284 -7 1848 127 0 0 chr1 12474296 12474563 -269719101 + AluSx SINE Alu 9 275 -37 252 0 0 0 chr1 12474567 12474595 -269719069 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1472 193 60 17 chr1 12474648 12475001 -269718663 - L1ME1 LINE L1 -218 5948 5581 1433 144 53 42 chr1 12475057 12475341 -269718323 - AluJo SINE Alu -25 287 1 2073 113 0 10 chr1 12475351 12475651 -269718013 - AluSx SINE Alu -15 297 1 180 162 0 27 chr1 12475657 12475694 -269717970 - MER5A DNA MER1_type -117 72 37 388 284 223 14 chr1 12476046 12476239 -269717425 - L2 LINE L2 -5 3308 3157 2054 102 31 0 chr1 12476239 12476533 -269717131 - AluSx SINE Alu -9 303 1 388 284 223 14 chr1 12476533 12476617 -269717047 - L2 LINE L2 -156 3157 2973 912 214 54 11 chr1 12476634 12476914 -269716750 + MER33 DNA MER1_type 24 315 -9 282 286 251 12 chr1 12476917 12477176 -269716488 - L2 LINE L2 -338 2976 2656 225 244 25 25 chr1 12477517 12477636 -269716028 + (CCGGG)n Simple_repeat Simple_repeat 5 123 0 2051 114 3 23 chr1 12479148 12479447 -269714217 + AluSx SINE Alu 1 293 -19 225 0 0 0 chr1 12480079 12480104 -269713560 + (T)n Simple_repeat Simple_repeat 1 25 0 2351 96 0 0 chr1 12480444 12480747 -269712917 - AluSx SINE Alu -9 303 1 822 183 79 0 chr1 12480805 12480969 -269712695 - MER20 DNA MER1_type -1 218 42 2237 103 10 3 chr1 12481207 12481518 -269712146 + AluSq SINE Alu 1 313 0 422 240 151 11 chr1 12482130 12482309 -269711355 + MIR SINE MIR 49 252 -10 2406 76 13 0 chr1 12482738 12483040 -269710624 + AluSq SINE Alu 1 306 -7 2004 143 0 7 chr1 12483824 12484124 -269709540 - AluJb SINE Alu -14 298 1 679 279 68 8 chr1 12484196 12484433 -269709231 + MIR SINE MIR 11 261 -1 444 208 0 0 chr1 12484495 12484596 -269709068 + (TATG)n Simple_repeat Simple_repeat 2 102 0 1377 166 0 14 chr1 12484702 12484925 -269708739 + AluJb SINE Alu 54 273 -39 1890 148 0 26 chr1 12484978 12485281 -269708383 + AluJb SINE Alu 1 295 -17 1904 135 17 3 chr1 12485315 12485611 -269708053 + AluJb SINE Alu 1 300 -12 23 0 0 0 chr1 12485635 12485658 -269708006 + AT_rich Low_complexity Low_complexity 1 23 0 1010 159 0 0 chr1 12485735 12485886 -269707778 + FRAM SINE Alu 3 153 -23 25 31 0 0 chr1 12485889 12485921 -269707743 + AT_rich Low_complexity Low_complexity 1 32 0 319 250 48 32 chr1 12485921 12486045 -269707619 + MIR SINE MIR 95 220 -42 1851 153 10 13 chr1 12486071 12486371 -269707293 - AluJo SINE Alu -10 302 4 1905 154 10 10 chr1 12486575 12486880 -269706784 - AluJb SINE Alu -7 305 1 2481 95 0 0 chr1 12487754 12488060 -269705604 + AluSq SINE Alu 1 306 -7 1991 142 0 19 chr1 12488366 12488684 -269704980 - AluJo SINE Alu 0 312 1 204 300 88 0 chr1 12488925 12489005 -269704659 + L2 LINE L2 3169 3255 -17 350 216 56 40 chr1 12489289 12489414 -269704250 - MER5A DNA MER1_type -37 152 26 567 169 305 0 chr1 12489437 12489591 -269704073 + MER58C DNA MER1_type 2 202 -13 445 273 51 17 chr1 12490165 12490341 -269703323 + MER5A DNA MER1_type 8 189 0 2324 103 0 6 chr1 12490384 12490696 -269702968 - AluSx SINE Alu -2 310 1 192 40 0 0 chr1 12490701 12490726 -269702938 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 837 165 0 71 chr1 12490726 12490896 -269702768 - AluJo SINE Alu -32 280 123 675 124 0 0 chr1 12490953 12491050 -269702614 + AluJ/FLAM SINE Alu 3 99 -213 382 216 23 16 chr1 12492375 12492487 -269701177 + MIR3 SINE MIR 56 168 -40 720 187 0 0 chr1 12492867 12493001 -269700663 - L1MB7 LINE L1 -13 6171 6038 888 167 0 61 chr1 12493018 12493198 -269700466 + FRAM SINE Alu 1 168 -8 1230 158 59 9 chr1 12493198 12493419 -269700245 - L1MB7 LINE L1 -168 6016 5785 2841 187 64 33 chr1 12493419 12493774 -269699890 - MER67B LTR ERV1 0 661 276 1413 130 39 17 chr1 12493774 12494005 -269699659 + MER46A DNA MER2_type 1 236 0 2841 187 64 33 chr1 12494005 12494290 -269699374 - MER67B LTR ERV1 -385 276 1 1578 180 24 0 chr1 12494290 12494585 -269699079 - L1MB7 LINE L1 -396 5788 5487 1960 99 37 15 chr1 12494599 12494871 -269698793 + AluSx SINE Alu 18 295 -17 231 211 0 0 chr1 12494918 12494975 -269698689 + A-rich Low_complexity Low_complexity 1 57 0 723 201 15 21 chr1 12494975 12495141 -269698523 - L1MB7 LINE L1 -671 5503 5325 1343 97 0 0 chr1 12495145 12495320 -269698344 - AluSg/x SINE Alu -12 300 126 2226 81 10 19 chr1 12495320 12495630 -269698034 - AluSq SINE Alu -6 307 1 563 180 72 22 chr1 12495630 12495754 -269697910 - L1MB7 LINE L1 -812 5334 5201 1644 189 10 20 chr1 12495754 12496086 -269697578 - AluJo SINE Alu 0 312 1 563 180 72 22 chr1 12496086 12496100 -269697564 - L1MB7 LINE L1 -945 5201 5189 363 78 0 0 chr1 12496388 12496439 -269697225 + (CATAA)n Simple_repeat Simple_repeat 2 52 0 210 250 0 0 chr1 12496985 12497029 -269696635 - MIR SINE MIR -111 151 108 194 322 60 40 chr1 12497026 12497175 -269696489 + L2 LINE L2 2131 2282 -1032 * 1758 214 77 3 chr1 12497211 12497590 -269696074 - MER21B LTR ERV1 -26 837 431 793 168 74 141 chr1 12497658 12497914 -269695750 - MER21B LTR ERV1 -614 249 11 329 151 12 58 chr1 12498018 12498104 -269695560 - MIR SINE MIR -2 260 179 562 228 184 0 chr1 12498217 12498375 -269695289 + MER58A DNA MER1_type 2 188 -36 298 229 0 0 chr1 12498399 12498460 -269695204 + MER58B DNA MER1_type 245 305 -36 298 229 0 0 chr1 12498484 12498545 -269695119 + MER58B DNA MER1_type 245 305 -36 398 232 21 0 chr1 12498569 12498664 -269695000 + MER58B DNA MER1_type 245 341 0 1318 240 104 12 chr1 12499280 12499692 -269693972 - MLT1C LTR MaLR -12 455 6 316 221 0 15 chr1 12499856 12499924 -269693740 - MER2 DNA MER2_type 0 345 279 2313 125 0 0 chr1 12499931 12500242 -269693422 + AluSx SINE Alu 1 311 -1 229 200 0 0 chr1 12500258 12500313 -269693351 + A-rich Low_complexity Low_complexity 1 55 0 2429 90 3 0 chr1 12500318 12500617 -269693047 + AluSp SINE Alu 1 300 -13 1129 147 25 15 chr1 12500621 12500819 -269692845 - MER2 DNA MER2_type -145 200 1 329 305 45 57 chr1 12500932 12501109 -269692555 + L2 LINE L2 3096 3270 -2 890 137 0 0 chr1 12501658 12501782 -269691882 - FLAM_C SINE Alu -19 124 1 2254 118 0 13 chr1 12501955 12502269 -269691395 - AluSx SINE Alu -2 310 1 2434 90 0 0 chr1 12502385 12502686 -269690978 - AluSx SINE Alu -10 302 2 470 281 142 11 chr1 12502704 12502978 -269690686 + L1MC4a LINE L1 5763 6072 -1736 2225 117 7 0 chr1 12503053 12503360 -269690304 + AluSc SINE Alu 1 309 0 25 0 0 0 chr1 12503360 12503385 -269690279 + AT_rich Low_complexity Low_complexity 1 25 0 721 163 47 23 chr1 12503494 12503623 -269690041 + FLAM_C SINE Alu 1 132 -1 180 0 0 0 chr1 12504132 12504152 -269689512 + (T)n Simple_repeat Simple_repeat 1 20 0 1273 201 23 4 chr1 12506473 12506737 -269686927 - AluJb SINE Alu -2 310 42 1864 148 41 0 chr1 12506755 12507045 -269686619 - AluJo SINE Alu -10 302 1 2659 58 0 0 chr1 12507457 12507766 -269685898 - AluY SINE Alu -2 309 1 702 198 33 66 chr1 12508889 12509071 -269684593 - MER3 DNA MER1_type 0 209 34 3177 207 26 20 chr1 12509577 12509781 -269683883 + MER82 DNA MER2_type 1 202 -451 2458 159 14 31 chr1 12509781 12510140 -269683524 + MER47B DNA MER2_type 1 353 -1970 2166 138 0 0 chr1 12510140 12510445 -269683219 - AluSx SINE Alu -7 305 1 2458 159 14 31 chr1 12510445 12510507 -269683157 + MER47B DNA MER2_type 353 415 -3 3177 207 26 20 chr1 12510507 12510950 -269682714 + MER82 DNA MER2_type 202 652 -1 15890 112 25 27 chr1 12511310 12512756 -269680908 + Tigger1 DNA MER2_type 1 1448 -970 685 187 8 0 chr1 12512756 12512879 -269680785 - FLAM_C SINE Alu -9 124 1 15890 112 25 27 chr1 12512879 12513318 -269680346 + Tigger1 DNA MER2_type 1448 1886 -532 1994 152 0 19 chr1 12513318 12513634 -269680030 + AluJo SINE Alu 1 310 -2 15890 112 25 27 chr1 12513634 12514170 -269679494 + Tigger1 DNA MER2_type 1886 2418 0 24 32 0 0 chr1 12514837 12514868 -269678796 + AT_rich Low_complexity Low_complexity 1 31 0 32 0 0 0 chr1 12515380 12515412 -269678252 + AT_rich Low_complexity Low_complexity 1 32 0 1675 163 43 0 chr1 12515412 12515688 -269677976 - AluSx SINE Alu -21 291 4 189 0 0 0 chr1 12515691 12515712 -269677952 + (T)n Simple_repeat Simple_repeat 1 21 0 1957 146 3 27 chr1 12517307 12517608 -269676056 + AluJo SINE Alu 1 294 -18 2225 125 20 0 chr1 12517616 12517921 -269675743 + AluSx SINE Alu 1 311 -1 1013 163 6 11 chr1 12518159 12518337 -269675327 - AluJb SINE Alu -15 297 121 2342 100 7 0 chr1 12518829 12519130 -269674534 + AluSx SINE Alu 2 304 -8 1873 146 25 0 chr1 12519351 12519632 -269674032 + AluJo SINE Alu 1 288 -24 342 0 0 0 chr1 12519834 12519872 -269673792 + (TG)n Simple_repeat Simple_repeat 2 39 0 2115 202 59 14 chr1 12520836 12521345 -269672319 - L1MB7 LINE L1 -1 6183 5652 522 163 51 10 chr1 12521385 12521483 -269672181 - L1MB7 LINE L1 -507 5677 5576 2234 107 3 0 chr1 12521483 12521781 -269671883 - AluSx SINE Alu -13 299 1 1271 204 115 4 chr1 12521783 12522053 -269671611 - AluJo SINE Alu -2 300 1 237 305 8 85 chr1 12522161 12522242 -269671422 - L2 LINE L2 -42 3230 3159 1948 118 0 73 chr1 12522242 12522378 -269671286 + AluSx SINE Alu 2 146 -166 2296 119 0 0 chr1 12522378 12522689 -269670975 + AluSx SINE Alu 1 311 -1 1948 118 0 73 chr1 12522689 12522867 -269670797 + AluSx SINE Alu 146 293 -19 237 305 8 85 chr1 12522867 12522903 -269670761 - L2 LINE L2 -113 3159 3122 2358 97 0 13 chr1 12525703 12526014 -269667650 - AluSq SINE Alu -4 309 3 1899 128 45 3 chr1 12527942 12528230 -269665434 - AluSx SINE Alu -12 300 1 44 63 0 0 chr1 12528315 12528394 -269665270 + AT_rich Low_complexity Low_complexity 1 79 0 1020 234 86 87 chr1 12528418 12529154 -269664510 - L1MC5 LINE L1 -61 7900 7246 358 179 28 47 chr1 12529208 12529314 -269664350 - L1MC5 LINE L1 -764 7197 7094 1944 141 3 3 chr1 12529331 12529629 -269664035 - AluJb SINE Alu -14 298 1 186 225 0 0 chr1 12530804 12530844 -269662820 + L2 LINE L2 1700 1739 -1575 201 216 0 0 chr1 12531431 12531468 -269662196 + MIR SINE MIR 99 135 -73 632 283 118 34 chr1 12531609 12531846 -269661818 + MIR SINE MIR 6 262 0 427 247 132 37 chr1 12532580 12532702 -269660962 - L1MC5 LINE L1 -35 7926 7817 2144 98 4 0 chr1 12532702 12533025 -269660639 - AluSx SINE Alu 0 330 7 427 247 132 37 chr1 12533025 12533197 -269660467 - L1MC5 LINE L1 -144 7817 7603 1029 86 25 0 chr1 12533371 12533533 -269660131 + (TTTCC)n Simple_repeat Simple_repeat 4 169 0 1998 132 0 0 chr1 12533539 12533819 -269659845 - AluSx SINE Alu -32 280 1 443 235 104 52 chr1 12533829 12534080 -269659584 - L1MC5 LINE L1 -384 7577 7314 2006 159 0 0 chr1 12534293 12534602 -269659062 - AluSx SINE Alu -3 309 1 267 278 211 0 chr1 12534831 12534921 -269658743 - L2 LINE L2 -2 3270 3162 261 222 12 86 chr1 12535901 12535982 -269657682 - MER5A DNA MER1_type -2 187 113 545 214 0 46 chr1 12536069 12536200 -269657464 + MER94 DNA DNA 1 125 -9 1974 163 0 0 chr1 12536282 12536583 -269657081 - AluSx SINE Alu -11 301 1 30 27 0 0 chr1 12536666 12536703 -269656961 + AT_rich Low_complexity Low_complexity 1 37 0 824 158 0 0 chr1 12536704 12536824 -269656840 - FLAM_C SINE Alu -23 120 1 1845 131 67 3 chr1 12537113 12537395 -269656269 + AluJb SINE Alu 1 300 -12 2435 68 0 3 chr1 12537883 12538179 -269655485 + AluY SINE Alu 2 296 -15 1404 179 37 15 chr1 12538793 12539066 -269654598 + AluJo SINE Alu 6 284 -28 355 288 44 44 chr1 12539118 12539278 -269654386 + MIR3 SINE MIR 40 199 -9 2389 90 0 10 chr1 12539418 12539728 -269653936 + AluSq SINE Alu 1 307 -6 322 266 93 58 chr1 12539793 12539877 -269653787 - MER5B DNA MER1_type -34 144 52 2091 139 7 3 chr1 12539877 12540180 -269653484 - AluSx SINE Alu -8 304 1 322 266 93 58 chr1 12540180 12540234 -269653430 - MER5B DNA MER1_type -126 52 1 2638 185 74 25 chr1 12541479 12541973 -269651691 - MER119 DNA MER1_type 0 583 58 2351 66 3 3 chr1 12541973 12542262 -269651402 + AluSc SINE Alu 1 289 -20 2638 185 74 25 chr1 12542262 12542319 -269651345 - MER119 DNA MER1_type -525 58 5 1972 131 10 10 chr1 12542382 12542687 -269650977 + AluJb SINE Alu 1 305 -7 29 28 0 0 chr1 12542740 12542776 -269650888 + AT_rich Low_complexity Low_complexity 1 36 0 894 275 130 17 chr1 12543355 12543832 -269649832 - L1ME3A LINE L1 -223 5947 5417 437 289 12 50 chr1 12543995 12544237 -269649427 - L1ME LINE L1 -342 5779 5547 215 211 0 19 chr1 12545074 12545126 -269648538 - MIR SINE MIR -46 216 166 404 284 9 9 chr1 12545157 12545273 -269648391 - L2 LINE L2 -38 3275 3160 567 170 30 52 chr1 12545554 12545689 -269647975 - MIR SINE MIR -62 200 69 234 192 48 151 chr1 12545701 12545803 -269647861 - L1M4 LINE L1 -3371 2775 2691 2073 122 14 7 chr1 12545803 12546098 -269647566 + AluSx SINE Alu 1 297 -15 234 192 48 151 chr1 12546098 12546141 -269647523 - L1M4 LINE L1 -3455 2691 2645 * 1474 207 71 15 chr1 12546139 12546549 -269647115 - L1M4 LINE L1 -2952 3194 2762 499 110 27 7 chr1 12547344 12547488 -269646176 - L1PA16 LINE L1 0 6166 5985 362 134 45 15 chr1 12547494 12547561 -269646103 + MER21B LTR ERV1 486 554 -309 1102 99 0 94 chr1 12547561 12547649 -269646015 - L1PA16 LINE L1 -188 5978 5916 2163 133 0 0 chr1 12547649 12547949 -269645715 - AluSx SINE Alu -12 300 1 1102 99 0 94 chr1 12547949 12548052 -269645612 - L1PA16 LINE L1 -250 5916 5805 203 205 48 108 chr1 12548177 12548260 -269645404 - MIR3 SINE MIR -11 197 120 204 292 31 15 chr1 12548519 12548584 -269645080 - MIR SINE MIR 0 262 197 2462 230 101 36 chr1 12548624 12549340 -269644324 - MER21B LTR ERV1 -82 781 20 1987 174 9 14 chr1 12549340 12549690 -269643974 - MER7A DNA MER2_type 0 346 1 1695 166 0 48 chr1 12552718 12553031 -269640633 - AluJb SINE Alu -14 298 1 534 302 50 30 chr1 12553330 12553413 -269640251 - MIR SINE MIR -28 234 154 2189 46 0 4 chr1 12553413 12553672 -269639992 - AluY SINE Alu 0 311 54 534 302 50 30 chr1 12553672 12553790 -269639874 - MIR SINE MIR -108 154 29 1910 138 138 0 chr1 12554140 12554436 -269639228 - MER1B DNA MER1_type 0 337 1 332 313 53 60 chr1 12554771 12554936 -269638728 - L2 LINE L2 -376 2938 2773 2173 94 20 0 chr1 12554936 12555233 -269638431 - AluSq SINE Alu -10 303 1 332 313 53 60 chr1 12555233 12555466 -269638198 - L2 LINE L2 -541 2773 2543 2175 88 24 20 chr1 12556090 12556386 -269637278 - AluSx SINE Alu -15 297 1 290 302 147 0 chr1 12556487 12556603 -269637061 - L2 LINE L2 -1 3312 3180 2123 85 0 0 chr1 12556645 12556905 -269636759 - AluSc SINE Alu -4 305 46 2205 107 3 16 chr1 12556923 12557233 -269636431 + AluSg SINE Alu 5 310 0 1059 130 0 0 chr1 12558210 12558379 -269635285 + (TCCC)n Simple_repeat Simple_repeat 1 169 0 2046 129 4 0 chr1 12558379 12558657 -269635007 - AluJb SINE Alu -33 279 1 240 152 0 0 chr1 12609246 12609292 -269584372 - L1MC4 LINE L1 0 8042 7997 529 234 12 42 chr1 12609310 12609477 -269584187 - L1MC4a LINE L1 -479 7329 7168 2267 105 0 0 chr1 12609588 12609883 -269583781 - AluSx SINE Alu -17 295 1 1580 256 43 18 chr1 12609885 12610377 -269583287 - L1MC4 LINE L1 -1034 7008 6505 241 311 235 0 chr1 12611133 12611265 -269582399 + MIR SINE MIR 49 211 -51 818 210 96 18 chr1 12611291 12611510 -269582154 - MIR SINE MIR -4 258 23 700 286 48 52 chr1 12611711 12611894 -269581770 + MIR SINE MIR 2 185 -77 2542 80 0 0 chr1 12611894 12612207 -269581457 - AluSq SINE Alu 0 313 1 700 286 48 52 chr1 12612207 12612275 -269581389 + MIR SINE MIR 185 252 -10 306 106 0 0 chr1 12613194 12613241 -269580423 + (TG)n Simple_repeat Simple_repeat 2 48 0 3853 160 36 70 chr1 12615045 12615374 -269578290 - L1MB5 LINE L1 -9 6165 5827 2333 92 0 7 chr1 12615374 12615679 -269577985 - AluSq SINE Alu -10 303 1 3853 160 36 70 chr1 12615679 12616051 -269577613 - L1MB5 LINE L1 -347 5827 5513 1421 188 24 40 chr1 12616051 12616349 -269577315 - AluJb SINE Alu -19 293 1 3853 160 36 70 chr1 12616349 12616752 -269576912 - L1MB5 LINE L1 -661 5513 5098 186 43 0 0 chr1 12616896 12616919 -269576745 + (A)n Simple_repeat Simple_repeat 1 23 0 235 305 9 0 chr1 12618067 12618140 -269575524 + MIR SINE MIR 76 151 -57 2507 54 0 3 chr1 12618846 12619143 -269574521 - AluY SINE Alu -15 296 1 2773 102 27 0 chr1 12620550 12620960 -269572704 + MER57B LTR ERV1 1 421 -13 198 103 0 0 chr1 12620973 12621002 -269572662 + (TTTTC)n Simple_repeat Simple_repeat 5 33 0 1027 76 29 12 chr1 12621002 12621174 -269572490 + (TTTC)n Simple_repeat Simple_repeat 2 176 0 2198 116 10 0 chr1 12621178 12621480 -269572184 - AluSq SINE Alu -8 305 1 302 200 100 0 chr1 12622346 12622406 -269571258 + MIR SINE MIR 123 188 -74 523 217 50 56 chr1 12622779 12622959 -269570705 - L2 LINE L2 -5 3308 3130 1025 277 90 48 chr1 12623004 12623615 -269570049 - L2 LINE L2 -458 2856 2220 216 0 0 0 chr1 12623696 12623720 -269569944 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1549 186 7 7 chr1 12623725 12623999 -269569665 - AluJo SINE Alu -38 274 1 206 250 60 50 chr1 12625637 12625737 -269567927 + L3b LINE CR1 1274 1374 -209 2808 244 73 8 chr1 12625755 12626633 -269567031 + L1MEc LINE L1 36 970 -5426 310 251 240 0 chr1 12626653 12626824 -269566840 + L1MEc LINE L1 878 1089 -5307 341 303 63 6 chr1 12626838 12627013 -269566651 + L1MEc LINE L1 1206 1390 -4825 508 231 39 19 chr1 12627014 12627170 -269566494 + L1MEc LINE L1 1683 1841 -4555 1785 193 81 8 chr1 12627189 12627372 -269566292 + L1MEc LINE L1 1929 2097 -4299 2144 117 6 19 chr1 12627372 12627688 -269565976 + AluSx SINE Alu 1 312 0 1785 193 81 8 chr1 12627688 12628021 -269565643 + L1MEc LINE L1 2097 2483 -3913 3060 59 83 5 chr1 12628030 12628437 -269565227 - MLT2A1 LTR ERVL -5 439 1 17780 62 9 8 chr1 12628462 12630657 -269563007 - HERVL-A1 LTR ERVL -69 5585 3388 705 190 0 8 chr1 12630659 12630780 -269562884 - AluSx SINE Alu -149 163 44 1585 196 0 22 chr1 12630929 12631241 -269562423 - AluSx SINE Alu -7 305 1 1900 122 54 0 chr1 12631289 12631568 -269562096 + AluSq SINE Alu 1 294 -19 28 48 0 0 chr1 12631597 12631639 -269562025 + AT_rich Low_complexity Low_complexity 1 42 0 27375 62 11 7 chr1 12631639 12635029 -269558635 - HERVL-A2 LTR ERVL -2250 3404 1 324 24 0 24 chr1 12635029 12635071 -269558593 - MLT2A2 LTR ERVL 0 453 413 315 0 0 0 chr1 12635072 12635107 -269558557 + (TA)n Simple_repeat Simple_repeat 1 35 0 332 206 54 0 chr1 12635108 12635200 -269558464 + L1MEc LINE L1 3274 3370 -2845 * 1200 237 6 44 chr1 12635194 12635511 -269558153 - L1M4 LINE L1 -6170 372 68 2133 102 3 3 chr1 12635998 12636311 -269557353 - AluSx SINE Alu 0 313 1 261 277 0 0 chr1 12636608 12636673 -269556991 - L2 LINE L2 0 3272 3208 2178 115 10 0 chr1 12636868 12637163 -269556501 + AluSp SINE Alu 1 298 -15 757 125 66 0 chr1 12637165 12637301 -269556363 - L1MA8 LINE L1 -27 6264 6120 1662 168 11 15 chr1 12638001 12638275 -269555389 + AluJb SINE Alu 1 273 -39 360 0 0 0 chr1 12638291 12638331 -269555333 + (CA)n Simple_repeat Simple_repeat 1 40 0 265 284 0 15 chr1 12641935 12642002 -269551662 - MIR SINE MIR -194 68 3 289 266 13 0 chr1 12642153 12642232 -269551432 - L3 LINE CR1 -189 1388 1309 1070 252 26 38 chr1 12642390 12642731 -269550933 - MER102b DNA MER1_type -3 338 2 195 42 0 0 chr1 12645643 12645667 -269547997 + (GA)n Simple_repeat Simple_repeat 2 25 0 1979 133 14 4 chr1 12645712 12645990 -269547674 - AluJb SINE Alu -31 281 1 321 262 87 0 chr1 12646236 12646339 -269547325 - L1M LINE L1 -2428 5380 5269 476 63 16 0 chr1 12646514 12646577 -269547087 - U3 snRNA snRNA -153 64 1 324 268 137 0 chr1 12647789 12647942 -269545722 + L1ME3A LINE L1 1279 1452 -4971 1442 263 60 45 chr1 12647980 12648675 -269544989 + L1ME3A LINE L1 4467 5172 -1769 922 115 0 0 chr1 12648678 12648800 -269544864 + FLAM_C SINE Alu 3 124 -19 300 176 0 44 chr1 12648801 12648892 -269544772 + GA-rich Low_complexity Low_complexity 2 88 0 1370 279 37 23 chr1 12648909 12649409 -269544255 - MLT1H LTR MaLR 0 549 1 2841 262 46 17 chr1 12649410 12650434 -269543230 + L1ME3A LINE L1 5206 6257 -708 206 125 21 0 chr1 12650489 12650537 -269543127 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 1083 178 102 22 chr1 12650558 12650783 -269542881 + AluJb SINE Alu 25 267 -45 397 326 13 30 chr1 12650815 12651051 -269542613 - AluJo SINE Alu -19 283 52 831 161 0 0 chr1 12651233 12651357 -269542307 - FLAM_C SINE Alu -19 124 1 1899 241 28 79 chr1 12651389 12651587 -269542077 + L1ME3A LINE L1 6284 6491 -474 1777 165 0 0 chr1 12651587 12651866 -269541798 + AluJb SINE Alu 1 279 -33 1899 241 28 79 chr1 12651866 12652385 -269541279 + L1ME3A LINE L1 6491 6964 -1 1619 167 24 24 chr1 12653545 12653838 -269539826 + AluJb SINE Alu 1 293 -19 221 281 16 16 chr1 12654680 12654744 -269538920 + L2 LINE L2 2564 2627 -687 2111 132 3 7 chr1 12655542 12655852 -269537812 - AluSx SINE Alu -1 311 3 22 0 0 0 chr1 12656098 12656120 -269537544 + AT_rich Low_complexity Low_complexity 1 22 0 213 254 127 0 chr1 12656239 12656302 -269537362 + MIR SINE MIR 125 195 -67 2489 143 57 0 chr1 12657024 12657429 -269536235 - MSTA LTR MaLR 0 428 1 1246 169 257 7 chr1 12657429 12657701 -269535963 - MER7A DNA MER2_type -8 338 1 1978 112 14 34 chr1 12659480 12659775 -269533889 - AluSx SINE Alu -23 289 1 359 222 101 0 chr1 12660383 12660482 -269533182 - MIR SINE MIR -117 145 37 343 253 47 47 chr1 12660777 12660927 -269532737 - MIR SINE MIR -54 208 59 2157 123 0 17 chr1 12662922 12663224 -269530440 + AluSx SINE Alu 1 297 -15 312 137 0 0 chr1 12663332 12663383 -269530281 + (GGGA)n Simple_repeat Simple_repeat 4 54 0 2170 106 11 0 chr1 12664381 12664688 -269528976 + AluSq SINE Alu 1 310 0 289 277 35 51 chr1 12664833 12664870 -269528794 - MIR SINE MIR -65 143 107 467 33 16 0 chr1 12664870 12664931 -269528733 + (TTA)n Simple_repeat Simple_repeat 1 62 0 289 277 35 51 chr1 12664931 12665054 -269528610 - MIR SINE MIR -101 107 33 1881 176 20 12 chr1 12665071 12665412 -269528252 - MER2 DNA MER2_type 0 344 1 2193 126 3 0 chr1 12666940 12667241 -269526423 - AluSq SINE Alu -11 302 1 335 275 48 48 chr1 12667902 12668069 -269525595 - MIR SINE MIR -73 189 23 266 294 47 65 chr1 12668107 12668277 -269525387 - MIR SINE MIR -50 212 46 308 299 143 20 chr1 12668952 12669099 -269524565 - MIR3 SINE MIR -6 202 38 258 338 65 14 chr1 12669227 12669366 -269524298 + L2 LINE L2 3122 3267 -5 2346 96 3 3 chr1 12669761 12670064 -269523600 + AluSp SINE Alu 1 303 -10 1706 162 46 0 chr1 12670259 12670543 -269523121 - AluJb SINE Alu -14 298 2 186 71 0 0 chr1 12670908 12670936 -269522728 + (A)n Simple_repeat Simple_repeat 1 28 0 264 30 0 0 chr1 12671546 12671567 -269522097 + (GA)n Simple_repeat Simple_repeat 1 54 0 264 30 0 0 chr1 12671567 12671600 -269522064 + (GA)n Simple_repeat Simple_repeat 1 33 0 189 0 0 0 chr1 12671599 12671620 -269522044 + (TG)n Simple_repeat Simple_repeat 1 21 0 * 1386 192 15 23 chr1 12672861 12673127 -269520537 + AluJb SINE Alu 36 299 -13 698 254 143 5 chr1 12673130 12673339 -269520325 - MIR SINE MIR -7 255 18 251 264 73 0 chr1 12673700 12673810 -269519854 - L2 LINE L2 -13 3300 3183 2503 72 3 0 chr1 12674310 12674617 -269519047 - AluSp SINE Alu -5 308 1 1592 144 121 47 chr1 12675811 12676151 -269517513 + MLT1A1 LTR MaLR 1 365 0 606 249 115 103 chr1 12676516 12677237 -269516427 + L2 LINE L2 2417 3200 -113 266 100 100 0 chr1 12677237 12677277 -269516387 - MLT1A2 LTR MaLR -330 44 1 606 249 115 103 chr1 12677277 12677383 -269516281 + L2 LINE L2 3200 3303 -10 201 138 0 0 chr1 12677384 12677413 -269516251 + (GGAA)n Simple_repeat Simple_repeat 4 32 0 322 239 123 68 chr1 12677420 12677583 -269516081 - MIR SINE MIR -90 172 1 2161 135 0 6 chr1 12678243 12678555 -269515109 + AluSx SINE Alu 1 310 -2 2178 127 0 3 chr1 12678576 12678876 -269514788 - AluSq SINE Alu -14 299 1 456 177 199 40 chr1 12679826 12680052 -269513612 - MER33 DNA MER1_type -59 265 4 1971 145 30 10 chr1 12680235 12680538 -269513126 - AluJb SINE Alu -3 309 1 919 232 70 11 chr1 12680844 12681116 -269512548 - L1ME3A LINE L1 -219 6020 5733 796 261 162 29 chr1 12681347 12681488 -269512176 - L1ME3A LINE L1 -4572 1824 1703 2138 119 23 0 chr1 12681488 12681790 -269511874 - AluSx SINE Alu -3 309 1 796 261 162 29 chr1 12681790 12682303 -269511361 - L1ME3A LINE L1 -4693 1703 1083 2276 111 0 7 chr1 12683784 12684090 -269509574 + AluSg SINE Alu 1 304 -6 420 210 34 67 chr1 12684995 12685114 -269508550 + MIR SINE MIR 127 241 -21 201 325 63 32 chr1 12685755 12685881 -269507783 - MIR SINE MIR -60 148 19 1947 138 7 3 chr1 12687492 12687782 -269505882 + AluSx SINE Alu 1 291 -21 197 348 11 11 chr1 12687811 12687903 -269505761 - MIR SINE MIR -121 141 50 1839 198 100 5 chr1 12688086 12688465 -269505199 + MER47B DNA MER2_type 4 418 0 596 266 85 5 chr1 12689501 12689700 -269503964 - MIR SINE MIR -1 261 47 279 284 0 0 chr1 12691489 12691556 -269502108 - MIR3 SINE MIR -11 197 131 192 315 139 18 chr1 12691769 12691934 -269501730 - MIR SINE MIR -77 185 1 198 209 93 0 chr1 12692858 12692901 -269500763 + L2 LINE L2 3225 3271 -1 258 194 0 14 chr1 12693258 12693286 -269500378 + (TTTAA)n Simple_repeat Simple_repeat 1 28 -43 1920 130 0 0 chr1 12693286 12693547 -269500117 + AluSx SINE Alu 1 261 -51 258 194 0 14 chr1 12693547 12693590 -269500074 + (TTTAA)n Simple_repeat Simple_repeat 28 71 0 1058 104 0 0 chr1 12693871 12694005 -269499659 + AluSg SINE Alu 1 134 -176 2294 120 3 0 chr1 12694005 12694314 -269499350 + AluSx SINE Alu 1 310 -2 736 239 6 0 chr1 12696070 12696229 -269497435 + FRAM SINE Alu 1 160 -6 282 245 0 0 chr1 12696770 12696823 -269496841 - MER2 DNA MER2_type -25 320 268 1007 174 6 6 chr1 12696913 12697085 -269496579 - MER2 DNA MER2_type -172 173 2 2479 81 7 0 chr1 12697118 12697425 -269496239 - AluSc SINE Alu 0 309 1 189 0 0 0 chr1 12697597 12697618 -269496046 + (T)n Simple_repeat Simple_repeat 1 21 0 219 129 35 35 chr1 12698242 12698327 -269495337 + (TA)n Simple_repeat Simple_repeat 1 85 0 327 288 12 53 chr1 12699903 12700073 -269493591 - L2 LINE L2 -191 3081 2919 332 234 204 50 chr1 12700073 12700250 -269493414 - MIR SINE MIR -25 237 37 1561 153 29 32 chr1 12701118 12701399 -269492265 + AluJo SINE Alu 1 280 -32 262 271 27 75 chr1 12701404 12701541 -269492123 + MIR SINE MIR 16 149 -62 2568 54 0 0 chr1 12703503 12703797 -269489867 + AluSc SINE Alu 1 294 -15 2213 124 0 0 chr1 12704819 12705118 -269488546 - AluSg SINE Alu -11 299 1 2209 123 0 7 chr1 12706399 12706707 -269486957 + AluJb SINE Alu 1 306 -6 862 174 26 0 chr1 12706967 12707122 -269486542 + Charlie1b DNA MER1_type 122 280 -243 2151 135 3 0 chr1 12708668 12708965 -269484699 + AluSx SINE Alu 1 298 -14 439 218 55 74 chr1 12709033 12709235 -269484429 - HAL1 LINE L1 -6 2501 2304 527 250 28 68 chr1 12709259 12709507 -269484157 - HAL1 LINE L1 -286 2221 1984 611 236 67 45 chr1 12709765 12709943 -269483721 - HAL1 LINE L1 -1584 923 742 463 272 174 53 chr1 12709975 12710354 -269483310 - HAL1 LINE L1 -2082 425 1 296 286 115 36 chr1 12711105 12711297 -269482367 + MIR SINE MIR 47 253 -9 249 367 23 16 chr1 12712839 12712967 -269480697 + MIR SINE MIR 21 149 -59 186 71 0 0 chr1 12713537 12713565 -269480099 + (A)n Simple_repeat Simple_repeat 1 28 0 700 271 6 0 chr1 12717146 12717327 -269476337 - MIR SINE MIR -73 189 8 289 217 87 0 chr1 12720200 12720292 -269473372 - MIR SINE MIR -39 223 124 351 105 0 63 chr1 12720369 12720464 -269473200 + (TA)n Simple_repeat Simple_repeat 1 89 0 759 260 130 25 chr1 12720540 12720855 -269472809 - L1ME4a LINE L1 -289 5832 5485 304 221 80 63 chr1 12720925 12721128 -269472536 - L1ME4a LINE L1 -669 5493 5295 2469 72 3 0 chr1 12721366 12721670 -269471994 + AluSg SINE Alu 1 305 -5 214 316 0 0 chr1 12722595 12722652 -269471012 + (TG)n Simple_repeat Simple_repeat 2 58 0 190 310 11 35 chr1 12724504 12724591 -269469073 - L2 LINE L2 -24 3289 3205 2429 81 0 10 chr1 12724976 12725283 -269468381 + AluSg SINE Alu 1 304 -6 418 288 124 17 chr1 12725896 12726129 -269467535 - MIR SINE MIR -4 258 1 414 214 0 0 chr1 12726248 12726318 -269467346 + AluJ/FLAM SINE Alu 2 71 -241 198 0 0 0 chr1 12726318 12726340 -269467324 + (A)n Simple_repeat Simple_repeat 1 22 0 1031 226 68 16 chr1 12727370 12727618 -269466046 - MIR SINE MIR 0 262 2 24 32 0 0 chr1 12729888 12729919 -269463745 + AT_rich Low_complexity Low_complexity 1 31 0 528 188 10 10 chr1 12730039 12730140 -269463524 - Charlie5 DNA MER1_type -2509 103 3 743 278 95 17 chr1 12730147 12730496 -269463168 + L1ME3A LINE L1 5485 5860 -310 23 0 0 0 chr1 12730826 12730849 -269462815 + AT_rich Low_complexity Low_complexity 1 23 0 2416 64 20 3 chr1 12730854 12731149 -269462515 + AluY SINE Alu 1 300 -11 296 314 66 29 chr1 12732592 12732729 -269460935 - L2 LINE L2 0 3313 3172 433 285 102 55 chr1 12732743 12732797 -269460867 - L2 LINE L2 -552 2762 2712 2329 71 3 32 chr1 12732797 12733105 -269460559 - AluY SINE Alu -12 299 1 433 285 102 55 chr1 12733105 12733306 -269460358 - L2 LINE L2 -602 2712 2495 513 321 64 21 chr1 12734782 12734969 -269458695 - MIR SINE MIR -19 243 49 1414 219 43 12 chr1 12736265 12736594 -269457070 - MLT1A2 LTR MaLR -4 370 32 433 318 0 0 chr1 12736834 12736944 -269456720 + L2 LINE L2 3187 3296 -17 24 0 0 0 chr1 12737829 12737853 -269455811 + AT_rich Low_complexity Low_complexity 1 24 0 677 111 10 0 chr1 12738369 12738468 -269455196 - FLAM_C SINE Alu -11 132 33 1606 140 38 0 chr1 12738470 12738706 -269454958 + AluJb SINE Alu 43 287 -25 333 311 136 80 chr1 12739277 12739666 -269453998 - L2 LINE L2 -14 3258 2848 257 380 86 16 chr1 12739825 12740080 -269453584 - L2 LINE L2 -661 2653 2381 909 127 0 15 chr1 12740997 12741131 -269452533 - FLAM_C SINE Alu -1 132 1 27 49 0 0 chr1 12741790 12741831 -269451833 + AT_rich Low_complexity Low_complexity 1 41 0 299 326 133 6 chr1 12743855 12744036 -269449628 + L3 LINE CR1 1250 1453 -124 191 230 100 80 chr1 12744939 12745039 -269448625 + MIR SINE MIR 82 183 -79 243 343 27 0 chr1 12745372 12745445 -269448219 - MIR SINE MIR -157 105 31 188 224 138 0 chr1 12746035 12746071 -269447593 + MER5B DNA MER1_type 16 46 -132 1922 84 78 35 chr1 12746071 12746355 -269447309 + AluSg SINE Alu 1 296 -14 188 224 138 0 chr1 12746355 12746376 -269447288 + MER5B DNA MER1_type 46 81 -97 25 0 0 0 chr1 12747970 12747995 -269445669 + AT_rich Low_complexity Low_complexity 1 25 0 294 50 0 0 chr1 12748161 12748201 -269445463 + (TG)n Simple_repeat Simple_repeat 1 40 0 955 103 0 0 chr1 12749980 12750096 -269443568 + AluY SINE Alu 1 116 -195 1195 84 12 24 chr1 12750198 12750397 -269443267 + AluSq SINE Alu 118 314 0 777 278 93 4 chr1 12750397 12750656 -269443008 - L2 LINE L2 -1232 2082 1801 932 292 135 15 chr1 12750664 12751065 -269442599 - L2 LINE L2 -1746 1568 1120 1387 167 80 12 chr1 12751758 12752009 -269441655 + AluJo SINE Alu 23 290 -22 359 344 93 49 chr1 12752041 12752448 -269441216 - L1MC4a LINE L1 -1710 6098 5674 263 213 41 127 chr1 12752662 12752906 -269440758 - L1M4 LINE L1 -2183 3963 3741 1895 155 0 34 chr1 12752941 12753263 -269440401 - AluJo SINE Alu -1 311 1 1268 278 100 68 chr1 12753263 12753422 -269440242 - L1M4 LINE L1 -2469 3677 3525 2459 62 0 0 chr1 12753422 12753711 -269439953 - AluY SINE Alu -22 289 1 2455 76 0 13 chr1 12753715 12754019 -269439645 - AluY SINE Alu -11 300 1 1726 161 4 7 chr1 12754019 12754298 -269439366 - AluJo SINE Alu -20 292 14 1268 278 100 68 chr1 12754298 12754311 -269439353 - L1M4 LINE L1 -2623 3523 3512 2088 116 3 20 chr1 12754311 12754613 -269439051 - AluSx SINE Alu -13 299 3 1268 278 100 68 chr1 12754613 12755243 -269438421 - L1M4 LINE L1 -2634 3512 2904 387 0 0 0 chr1 12755243 12755286 -269438378 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 2047 100 21 7 chr1 12755287 12755566 -269438098 - AluSx SINE Alu -29 283 1 1268 278 100 68 chr1 12755566 12755660 -269438004 - L1M4 LINE L1 -3242 2904 2814 1847 130 55 3 chr1 12755660 12755953 -269437711 + AluJb SINE Alu 1 308 -4 1268 278 100 68 chr1 12755953 12756009 -269437655 - L1M4 LINE L1 -3332 2814 2761 2290 98 0 7 chr1 12756009 12756306 -269437358 + AluSg SINE Alu 1 295 -15 1268 278 100 68 chr1 12756306 12756338 -269437326 - L1M4 LINE L1 -3385 2761 2678 272 289 29 10 chr1 12757203 12757307 -269436357 - L2 LINE L2 -24 3289 3184 304 313 224 33 chr1 12757367 12757786 -269435878 - L2 LINE L2 -337 2977 2461 1632 175 6 46 chr1 12757786 12758111 -269435553 + AluJb SINE Alu 1 312 0 304 313 224 33 chr1 12758111 12758151 -269435513 - L2 LINE L2 -853 2461 2430 384 304 184 22 chr1 12758155 12758333 -269435331 - L2 LINE L2 -1101 2213 2065 2447 68 0 10 chr1 12758333 12758629 -269435035 + AluY SINE Alu 1 293 -18 384 304 184 22 chr1 12758629 12758815 -269434849 - L2 LINE L2 -1249 2065 1790 2043 184 105 77 chr1 12758842 12759383 -269434281 + MER97a DNA MER1_type? 1 525 -369 2140 132 6 10 chr1 12759383 12759694 -269433970 - AluSq SINE Alu -3 310 1 2043 184 105 77 chr1 12759694 12759734 -269433930 + MER97a DNA MER1_type? 525 562 -332 2222 95 7 20 chr1 12759734 12760030 -269433634 + AluSx SINE Alu 1 292 -20 2043 184 105 77 chr1 12760030 12760114 -269433550 + MER97a DNA MER1_type? 562 686 -208 2349 104 0 0 chr1 12760304 12760612 -269433052 + AluSx SINE Alu 1 308 -4 2496 71 3 0 chr1 12760785 12761079 -269432585 - AluSp SINE Alu -17 296 2 411 234 53 35 chr1 12761493 12761664 -269432000 - HAL1 LINE L1 -110 2397 2224 944 258 70 21 chr1 12761695 12762024 -269431640 + L1ME2 LINE L1 3297 3641 -2505 362 224 43 9 chr1 12762022 12762138 -269431526 + L1ME2 LINE L1 5766 5885 -279 * 2413 83 3 0 chr1 12762302 12762602 -269431062 + AluY SINE Alu 1 301 -10 1342 123 0 0 chr1 12762724 12762931 -269430733 - AluSg/x SINE Alu 0 312 106 354 288 27 0 chr1 12763837 12763948 -269429716 - MLT2E LTR ERVL -495 133 20 491 136 4 27 chr1 12763987 12764230 -269429434 + AluSx SINE Alu 22 302 -7 1704 154 27 27 chr1 12764262 12764561 -269429103 + AluJo SINE Alu 1 299 -13 2349 94 0 0 chr1 12764563 12764888 -269428776 + AluSg SINE Alu 1 325 0 847 239 52 15 chr1 12764892 12765160 -269428504 - MER33 DNA MER1_type -46 278 1 2191 99 0 51 chr1 12766372 12766685 -269426979 + AluSg SINE Alu 2 298 -12 312 321 79 0 chr1 12767386 12767526 -269426138 + L2 LINE L2 1663 1813 -1501 2321 105 6 19 chr1 12767560 12767874 -269425790 - AluSx SINE Alu -2 310 1 315 164 164 0 chr1 12767913 12767980 -269425684 - L1MC4a LINE L1 -1920 5888 5811 486 98 0 12 chr1 12767985 12768067 -269425597 - HY3 scRNA scRNA 0 101 21 1109 257 115 35 chr1 12768071 12768538 -269425126 - L1MC4a LINE L1 -1971 5837 5328 2201 111 3 10 chr1 12768538 12768844 -269424820 - AluSx SINE Alu -8 304 1 1109 257 115 35 chr1 12768844 12768863 -269424801 - L1MC4a LINE L1 -2480 5328 5312 21 36 0 0 chr1 12768923 12768951 -269424713 + AT_rich Low_complexity Low_complexity 1 28 0 391 264 62 115 chr1 12769194 12769444 -269424220 + L2 LINE L2 1526 1757 -1557 2189 125 3 3 chr1 12769444 12769756 -269423908 - AluSx SINE Alu 0 312 1 391 264 62 115 chr1 12769756 12769827 -269423837 + L2 LINE L2 1757 1830 -1484 390 288 14 14 chr1 12769827 12769973 -269423691 - L1MEc LINE L1 -3526 2689 2544 2093 152 40 45 chr1 12769990 12770538 -269423126 - MLT2A2 LTR ERVL 0 554 2 1845 174 0 0 chr1 12770538 12770819 -269422845 - AluJb SINE Alu -31 281 1 807 235 121 18 chr1 12770819 12771278 -269422386 - L1MEc LINE L1 -3657 2558 2100 786 237 5 11 chr1 12771277 12771463 -269422201 - L1MC1 LINE L1 0 6333 6149 * 2136 273 78 22 chr1 12771470 12771742 -269421922 - L1MEc LINE L1 -4273 2123 1868 2453 100 0 0 chr1 12771742 12772051 -269421613 - AluSx SINE Alu -3 309 1 2136 273 78 22 chr1 12772051 12772142 -269421522 - L1MEc LINE L1 -4528 1868 1784 2612 63 0 0 chr1 12772142 12772444 -269421220 - AluY SINE Alu -9 302 1 2136 273 78 22 chr1 12772444 12772480 -269421184 - L1MEc LINE L1 -4612 1784 1751 234 0 0 0 chr1 12772480 12772506 -269421158 + (TG)n Simple_repeat Simple_repeat 2 27 0 1927 149 0 4 chr1 12772508 12772789 -269420875 - AluJb SINE Alu -32 280 1 2136 273 78 22 chr1 12772789 12773442 -269420222 - L1MEc LINE L1 -4645 1751 1006 675 145 111 8 chr1 12773442 12773559 -269420105 + FLAM_C SINE Alu 1 129 -14 611 231 60 42 chr1 12773587 12773944 -269419720 - L1MEc LINE L1 -4890 931 571 619 374 20 6 chr1 12774034 12774376 -269419288 - L1MEc LINE L1 -6015 381 35 2102 254 152 21 chr1 12774376 12774536 -269419128 + L2 LINE L2 1820 1958 -1356 2360 102 0 0 chr1 12774536 12774839 -269418825 - AluY SINE Alu -8 303 1 2102 254 152 21 chr1 12774839 12775422 -269418242 + L2 LINE L2 1958 2660 -654 227 308 22 0 chr1 12775470 12775561 -269418103 - LTR33 LTR ERVL -40 481 389 1112 251 30 8 chr1 12775599 12775866 -269417798 - LTR33 LTR ERVL -242 279 7 283 289 67 40 chr1 12775970 12776119 -269417545 + MLT1J2 LTR MaLR 272 424 -26 279 276 106 57 chr1 12776142 12776252 -269417412 + MIR SINE MIR 134 253 -9 1738 148 36 18 chr1 12776252 12776556 -269417108 - AluJb SINE Alu 0 309 1 279 276 106 57 chr1 12776556 12776567 -269417097 + MIR SINE MIR 253 262 0 306 0 0 0 chr1 12776675 12776709 -269416955 + (TG)n Simple_repeat Simple_repeat 2 35 0 241 217 140 25 chr1 12776815 12776972 -269416692 + MLT1H1 LTR MaLR 126 300 -249 475 201 113 96 chr1 12777054 12777238 -269416426 + MLT1H1 LTR MaLR 302 492 -63 1718 162 36 16 chr1 12777238 12777541 -269416123 - AluJo SINE Alu -1 311 3 475 201 113 96 chr1 12777541 12777585 -269416079 + MLT1H1 LTR MaLR 492 534 -21 500 267 47 17 chr1 12778387 12778559 -269415105 + MIR SINE MIR 16 192 -70 394 256 51 8 chr1 12778771 12778888 -269414776 - MIR SINE MIR -117 145 24 433 309 45 113 chr1 12779679 12780061 -269413603 + L2 LINE L2 2914 3269 -3 426 284 50 28 chr1 12780064 12780205 -269413459 + L2 LINE L2 3129 3272 0 1672 183 29 13 chr1 12780837 12781143 -269412521 + AluJo SINE Alu 1 311 -1 361 0 41 0 chr1 12781146 12781195 -269412469 + (GAAA)n Simple_repeat Simple_repeat 2 52 0 639 315 56 80 chr1 12781759 12781840 -269411824 + L1ME4a LINE L1 5396 5477 -644 1203 185 101 47 chr1 12781840 12782116 -269411548 - AluJo SINE Alu -19 293 3 639 315 56 80 chr1 12782116 12782548 -269411116 + L1ME4a LINE L1 5477 5897 -224 248 222 0 69 chr1 12782897 12782969 -269410695 - L2 LINE L2 -1 3312 3246 26 0 0 0 chr1 12783024 12783050 -269410614 + AT_rich Low_complexity Low_complexity 1 26 0 2245 114 3 0 chr1 12783055 12783363 -269410301 + AluSq SINE Alu 1 309 -4 858 164 48 36 chr1 12783373 12783538 -269410126 - AluSg/x SINE Alu -12 298 132 1751 110 0 9 chr1 12783538 12783799 -269409865 - AluSc SINE Alu 0 309 59 207 0 0 0 chr1 12833995 12834018 -269359646 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 561 192 0 0 chr1 12834319 12834858 -269358806 + (TG)n Simple_repeat Simple_repeat 1 539 0 301 291 112 8 chr1 12835638 12835772 -269357892 - MIR SINE MIR -79 183 36 217 305 76 23 chr1 12835964 12836095 -269357569 - L2 LINE L2 -62 3251 3114 568 246 0 16 chr1 12836134 12836260 -269357404 - MIR SINE MIR -114 148 25 248 238 50 12 chr1 12836520 12836600 -269357064 + L1ME4a LINE L1 5842 5924 -197 2170 123 0 3 chr1 12836604 12836896 -269356768 - AluJb SINE Alu -11 301 11 778 146 0 0 chr1 12837059 12837182 -269356482 + FRAM SINE Alu 37 159 -17 264 77 0 0 chr1 12837186 12837225 -269356439 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 576 273 126 27 chr1 12837730 12837972 -269355692 - MIR SINE MIR -1 261 1 237 308 140 9 chr1 12837997 12838104 -269355560 + L2 LINE L2 3128 3248 -24 307 272 62 12 chr1 12838717 12838798 -269354866 + MIR SINE MIR 8 92 -170 2372 93 0 3 chr1 12838839 12839149 -269354515 - AluSc SINE Alu 0 309 1 413 302 149 50 chr1 12839929 12840147 -269353517 + L2 LINE L2 2466 2661 -611 2295 65 41 24 chr1 12840147 12840441 -269353223 - AluY SINE Alu -12 299 1 413 302 149 50 chr1 12840441 12840747 -269352917 + L2 LINE L2 2661 3039 -233 3008 138 53 0 chr1 12840755 12841241 -269352423 - MER41E LTR ERV1 0 512 1 487 205 105 54 chr1 12841327 12841566 -269352098 - MER41E-int LTR ERV1 0 6676 6426 266 120 120 0 chr1 12841566 12841616 -269352048 - MADE1 DNA Mariner 0 80 25 648 299 26 11 chr1 12841623 12841891 -269351773 - MER41E-int LTR ERV1 -247 6429 6158 699 320 59 37 chr1 12841922 12842699 -269350965 - LTR43-int LTR ERV1 -3195 3896 2708 2146 163 40 36 chr1 12842926 12843398 -269350266 + LTR22B LTR ERVK 1 474 -18 561 293 74 30 chr1 12843508 12843901 -269349763 - LTR43-int LTR ERV1 -1784 3014 2605 423 292 7 7 chr1 12844047 12844184 -269349480 - LTR43-int LTR ERV1 -4028 2648 2512 * 525 306 40 34 chr1 12844183 12844429 -269349235 - LTR43-int LTR ERV1 -4012 942 694 2068 150 7 7 chr1 12845177 12845484 -269348180 + AluJb SINE Alu 1 307 -5 3204 136 18 10 chr1 12845745 12846253 -269347411 - MER41E LTR ERV1 0 512 1 949 117 28 16 chr1 12846314 12846567 -269347097 + CT-rich Low_complexity Low_complexity 1 257 0 2202 130 0 0 chr1 12846567 12846867 -269346797 - AluSx SINE Alu -12 300 1 217 213 29 52 chr1 12846956 12847092 -269346572 + (CCCTG)n Simple_repeat Simple_repeat 1 133 0 254 289 139 36 chr1 12847092 12847258 -269346406 + L2 LINE L2 3075 3257 -56 237 222 0 0 chr1 12847278 12847341 -269346323 + (TGAA)n Simple_repeat Simple_repeat 1 63 0 326 282 141 81 chr1 12847523 12847736 -269345928 - L2 LINE L2 -84 3188 2989 1296 183 88 45 chr1 12847736 12847964 -269345700 - MER96B DNA MER1_type -1 416 162 2008 125 0 34 chr1 12847964 12848129 -269345535 - AluJo SINE Alu -26 286 134 1965 162 3 0 chr1 12848129 12848426 -269345238 - AluJb SINE Alu -14 298 1 2008 125 0 34 chr1 12848426 12848556 -269345108 - AluJo SINE Alu -178 134 1 1296 183 88 45 chr1 12848556 12848725 -269344939 - MER96B DNA MER1_type -255 162 2 326 282 141 81 chr1 12848725 12848809 -269344855 - L2 LINE L2 -283 2989 2873 497 208 110 87 chr1 12848853 12848960 -269344704 + MER5B DNA MER1_type 1 115 -63 2395 75 0 0 chr1 12848960 12849238 -269344426 - AluSg SINE Alu -20 290 13 497 208 110 87 chr1 12849238 12849303 -269344361 + MER5B DNA MER1_type 115 177 -1 715 253 18 6 chr1 12849430 12849596 -269344068 - MER5B DNA MER1_type -10 168 1 260 242 29 117 chr1 12850296 12850536 -269343128 + L1ME1 LINE L1 5701 5919 -247 217 159 23 23 chr1 12851052 12851096 -269342568 + MIR SINE MIR 79 122 -86 1774 181 31 17 chr1 12851546 12851900 -269341764 - MLT1A1 LTR MaLR -2 363 5 2165 106 36 0 chr1 12852665 12852966 -269340698 - AluSx SINE Alu 0 312 1 872 174 0 28 chr1 12853371 12853515 -269340149 - AluJb SINE Alu -47 265 126 2491 68 0 10 chr1 12853522 12853833 -269339831 - AluY SINE Alu -3 308 1 249 219 193 35 chr1 12854081 12854195 -269339469 + MIR SINE MIR 81 212 -50 2319 99 0 3 chr1 12855825 12856117 -269337547 - AluSg SINE Alu -14 296 6 2073 227 84 49 chr1 12856521 12857094 -269336570 - MLT1E LTR MaLR 0 593 1 234 143 71 0 chr1 12857348 12857390 -269336274 - LTR50 LTR ERVL 0 795 751 2986 312 47 7 chr1 12857528 12858593 -269335071 + HERVL40 LTR ERVL 1985 3101 -2663 189 0 0 0 chr1 12858593 12858614 -269335050 + (CCTG)n Simple_repeat Simple_repeat 1 21 0 2986 312 47 7 chr1 12858614 12858691 -269334973 + HERVL40 LTR ERVL 3101 3173 -2591 269 261 14 109 chr1 12858739 12858817 -269334847 + HERVL40 LTR ERVL 2585 2646 -391 1667 188 0 58 chr1 12858817 12859147 -269334517 - AluJb SINE Alu 0 312 2 269 261 14 109 chr1 12859147 12859206 -269334458 + HERVL40 LTR ERVL 2646 2709 -328 459 248 26 0 chr1 12859438 12859555 -269334109 + HERVL40 LTR ERVL 2783 2902 -135 841 193 32 27 chr1 12859568 12859755 -269333909 + HERVL40 LTR ERVL 5343 5530 0 813 229 28 0 chr1 12859759 12859938 -269333726 + LTR40a LTR ERVL 5 188 -331 4838 111 3 1 chr1 12859945 12860695 -269332969 - L1P LINE L1 -880 5266 4516 6121 87 8 13 chr1 12860695 12861546 -269332118 + L1PA8 LINE L1 5323 6172 0 1036 241 53 8 chr1 12861565 12861830 -269331834 + LTR40b LTR ERVL 153 429 -33 269 172 0 47 chr1 12861855 12861919 -269331745 + LTR40b LTR ERVL 402 462 0 414 305 108 65 chr1 12861920 12861958 -269331706 + LTR41 LTR ERVL 75 110 -663 2375 85 0 13 chr1 12861958 12862264 -269331400 - AluY SINE Alu -9 302 1 414 305 108 65 chr1 12862264 12862576 -269331088 + LTR41 LTR ERVL 110 440 -333 3038 303 43 22 chr1 12862693 12863896 -269329768 - ERVL LTR ERVL -2941 2823 1595 1772 176 10 21 chr1 12863911 12864201 -269329463 - AluJo SINE Alu -13 299 13 3379 90 2 5 chr1 12864326 12864771 -269328893 - MLT2A1 LTR ERVL 0 444 1 2318 112 0 3 chr1 12864863 12865176 -269328488 - AluSq SINE Alu -1 312 1 1917 176 13 3 chr1 12865440 12865747 -269327917 + AluJb SINE Alu 1 310 -2 970 238 42 45 chr1 12865800 12865868 -269327796 - MLT1F1 LTR MaLR 0 567 500 2615 41 3 28 chr1 12865868 12866187 -269327477 + AluY SINE Alu 1 311 0 970 238 42 45 chr1 12866187 12866404 -269327260 - MLT1F1 LTR MaLR -67 500 283 2610 112 18 0 chr1 12866572 12866955 -269326709 + L1PA15 LINE L1 5774 6163 -2 242 107 143 0 chr1 12867301 12867357 -269326307 - MLT1F1 LTR MaLR -328 239 176 228 250 0 16 chr1 12867418 12867482 -269326182 - MLT1F1 LTR MaLR -395 172 110 1296 139 6 4 chr1 12867482 12867713 -269325951 - L1M4 LINE L1 -361 5819 5579 1951 121 24 34 chr1 12867722 12868020 -269325644 - AluSx SINE Alu -17 295 1 194 211 0 0 chr1 12868162 12868200 -269325464 + L2 LINE L2 2707 2744 -570 1658 116 162 12 chr1 12868206 12868465 -269325199 + AluSg1 SINE Alu 1 298 -11 878 201 66 108 chr1 12868758 12869333 -269324331 - MER34B LTR ERV1 -28 514 1 391 221 13 0 chr1 12869400 12869477 -269324187 - MIR SINE MIR -153 109 32 305 348 0 0 chr1 12869705 12869794 -269323870 + MIR SINE MIR 56 144 -118 1888 184 7 0 chr1 12870006 12870316 -269323348 - AluJb SINE Alu 0 312 1 203 309 0 62 chr1 12870322 12870403 -269323261 - L2 LINE L2 -2 3270 3195 7655 26 3 0 chr1 12870498 12871824 -269321840 + L1PA4 LINE L1 4820 6150 -5 267 300 92 8 chr1 12872005 12872125 -269321539 - L2 LINE L2 -7 3265 3136 369 240 75 20 chr1 12872310 12872456 -269321208 - L2 LINE L2 -421 2893 2740 930 142 0 0 chr1 12872588 12872715 -269320949 - FLAM_C SINE Alu -6 127 1 377 316 59 21 chr1 12872949 12873136 -269320528 - MIR SINE MIR -46 216 23 187 189 27 0 chr1 12873246 12873283 -269320381 + L2 LINE L2 3235 3272 0 1851 189 46 8 chr1 12873535 12873906 -269319758 - MSTB1 LTR MaLR 0 432 48 836 214 0 0 chr1 12874026 12874171 -269319493 + AluJb SINE Alu 148 292 -20 1989 259 31 22 chr1 12874221 12874869 -269318795 + L1ME4a LINE L1 997 1650 -4892 238 244 122 0 chr1 12874957 12875039 -269318625 + LTR10B LTR ERV1 194 285 -262 1215 204 40 25 chr1 12875102 12875377 -269318287 + LTR10B LTR ERV1 269 547 0 532 175 0 10 chr1 12875402 12875505 -269318159 + L1ME4a LINE L1 4026 4127 -2517 * 1791 142 25 6 chr1 12875503 12875821 -269317843 + L1ME4a LINE L1 5961 6284 -398 1589 130 13 74 chr1 12875825 12876124 -269317540 - MLT2B3 LTR ERVL 0 554 274 1535 213 10 3 chr1 12876237 12876537 -269317127 + AluSx SINE Alu 7 308 -4 1951 166 0 3 chr1 12876559 12876861 -269316803 + AluJb SINE Alu 9 309 -3 508 271 94 30 chr1 12877100 12877303 -269316361 - MIR SINE MIR -26 236 21 432 196 30 68 chr1 12877364 12877497 -269316167 + L1ME4a LINE L1 6455 6582 -37 2481 79 0 22 chr1 12877898 12878213 -269315451 - AluY SINE Alu -3 308 1 290 287 0 26 chr1 12878619 12878734 -269314930 + (TGAA)n Simple_repeat Simple_repeat 1 112 0 216 222 7 37 chr1 12878744 12878879 -269314785 + (TGGA)n Simple_repeat Simple_repeat 4 134 0 1746 164 3 17 chr1 12880491 12880790 -269312874 + AluJo SINE Alu 1 295 -17 247 341 144 0 chr1 12881500 12881667 -269311997 - MIR SINE MIR -12 250 60 2149 107 10 0 chr1 12881845 12882144 -269311520 + AluSx SINE Alu 1 302 -10 1723 146 3 33 chr1 12882999 12883300 -269310364 + AluJb SINE Alu 1 292 -20 763 325 44 14 chr1 12883469 12883764 -269309900 + L1ME2 LINE L1 5850 6153 -11 1502 91 10 0 chr1 12883764 12883993 -269309671 - AluSg/x SINE Alu 0 313 83 692 222 0 26 chr1 12984110 12984263 -269209401 - AluSc SINE Alu -17 292 144 1407 200 3 52 chr1 12984338 12984526 -269209138 - AluJb SINE Alu -13 299 130 1831 153 0 39 chr1 12984526 12984833 -269208831 + AluSx SINE Alu 1 295 -17 1407 200 3 52 chr1 12984833 12984954 -269208710 - AluJb SINE Alu -182 130 5 1506 193 10 24 chr1 12985529 12985825 -269207839 + AluSx SINE Alu 5 296 -16 2758 206 59 5 chr1 12986195 12986767 -269206897 + LTR26 LTR ERV1 1 603 0 2799 209 60 2 chr1 12987036 12987606 -269206058 + LTR26 LTR ERV1 1 603 0 495 230 8 8 chr1 12987744 12987870 -269205794 + MER65A LTR ERV1 215 340 -105 994 187 160 17 chr1 12988090 12988384 -269205280 + LTR44 LTR ERV1 1 336 -183 346 117 17 17 chr1 12988462 12988522 -269205142 + Alu SINE Alu 247 306 -2 1910 157 3 10 chr1 12988522 12988827 -269204837 + AluSc SINE Alu 1 303 -6 1942 149 3 3 chr1 12989201 12989519 -269204145 - AluSc SINE Alu 0 318 1 230 190 17 0 chr1 12989573 12989631 -269204033 + (TTTA)n Simple_repeat Simple_repeat 3 61 0 2063 134 3 0 chr1 12989633 12989924 -269203740 - AluSq SINE Alu -21 292 1 1788 155 7 17 chr1 12990947 12991084 -269202580 + AluSx SINE Alu 1 138 -174 2168 84 0 0 chr1 12991084 12991357 -269202307 + AluY SINE Alu 35 307 -4 1788 155 7 17 chr1 12991357 12991515 -269202149 + AluSx SINE Alu 138 293 -19 1999 136 13 3 chr1 12994784 12995086 -269198578 + AluSg SINE Alu 1 305 -5 1356 214 0 37 chr1 12995095 12995439 -269198225 + AluJb SINE Alu 1 333 0 694 195 8 0 chr1 12995520 12995643 -269198021 + FLAM_C SINE Alu 2 125 -18 1428 194 14 11 chr1 12995727 12996010 -269197654 + AluSx SINE Alu 5 288 -24 12817 100 15 8 chr1 12996369 12999096 -269194568 + L1PA7 LINE L1 3384 6134 -20 526 326 11 11 chr1 12999211 12999401 -269194263 + MIR SINE MIR 59 248 -14 2222 109 0 0 chr1 12999401 12999684 -269193980 + AluSg SINE Alu 1 283 -27 186 43 0 0 chr1 12999684 12999707 -269193957 + (TA)n Simple_repeat Simple_repeat 2 24 0 419 295 8 16 chr1 13000500 13000629 -269193035 + LTR67 LTR ERVL 428 555 -2 237 108 0 0 chr1 13000725 13000762 -269192902 + (TGAA)n Simple_repeat Simple_repeat 2 38 0 849 85 115 0 chr1 13001244 13001374 -269192290 - L1PA13 LINE L1 -376 5787 5643 2258 123 57 8 chr1 13001376 13001742 -269191922 + L1PA13 LINE L1 5778 6161 -2 1014 163 6 0 chr1 13001922 13002088 -269191576 - MSTB LTR MaLR -259 167 1 1577 208 30 14 chr1 13002282 13002647 -269191017 - MLT1A2 LTR MaLR -2 372 2 361 274 82 64 chr1 13003311 13003716 -269189948 + L2 LINE L2 2299 2710 -604 21 36 0 0 chr1 13004423 13004451 -269189213 + AT_rich Low_complexity Low_complexity 1 28 0 306 224 15 0 chr1 13005216 13005283 -269188381 - MER103 DNA DNA -77 89 22 2290 57 57 0 chr1 13006448 13006729 -269186935 + AluY SINE Alu 1 297 -14 239 246 0 18 chr1 13007269 13007326 -269186338 + CT-rich Low_complexity Low_complexity 2 57 0 410 266 112 89 chr1 13007457 13007851 -269185813 + MLT1J LTR MaLR 25 427 -84 2162 114 3 3 chr1 13009799 13010096 -269183568 + AluSg1 SINE Alu 1 297 -12 434 263 35 29 chr1 13010177 13010348 -269183316 - MIR SINE MIR -13 249 78 350 89 0 0 chr1 13010477 13010525 -269183139 - MLT2D LTR ERVL -6 391 349 317 241 0 19 chr1 13010526 13010634 -269183030 + (TATATG)n Simple_repeat Simple_repeat 1 106 0 253 215 0 15 chr1 13010635 13010669 -269182995 + (TG)n Simple_repeat Simple_repeat 2 36 -29 1235 181 97 28 chr1 13010669 13010989 -269182675 - MER2 DNA MER2_type -1 343 2 253 215 0 15 chr1 13010989 13011019 -269182645 + (TG)n Simple_repeat Simple_repeat 36 65 0 1306 109 0 0 chr1 13011049 13011223 -269182441 + AluSq SINE Alu 130 303 -10 1031 212 82 20 chr1 13011484 13011729 -269181935 - MLT2D LTR ERVL -143 271 12 6431 34 1 1 chr1 13011829 13013095 -269180569 + L1PA4 LINE L1 4750 6015 -140 3632 80 2 25 chr1 13013789 13014300 -269179364 + L1PA4 LINE L1 5657 6155 0 1864 116 116 0 chr1 13016213 13016506 -269177158 + MER41C LTR ERV1 228 554 0 7525 113 35 15 chr1 13016594 13017732 -269175932 + MER41C-int LTR ERV1 4 1164 -6592 236 98 0 24 chr1 13018505 13018546 -269175118 + (CTCA)n Simple_repeat Simple_repeat 1 40 0 314 299 30 8 chr1 13019108 13019242 -269174422 - MER5A DNA MER1_type -38 151 15 249 288 15 0 chr1 13019932 13019998 -269173666 + (TCTA)n Simple_repeat Simple_repeat 3 69 0 304 176 56 56 chr1 13020330 13020438 -269173226 + MLT1K LTR MaLR 395 502 -86 1083 161 0 0 chr1 13020477 13020645 -269173019 - AluSg/x SINE Alu 0 310 143 488 232 1 0 chr1 13020748 13020872 -269172792 - L1M4 LINE L1 -448 5726 5602 246 263 188 23 chr1 13021370 13021503 -269172161 - MLT1H1 LTR MaLR -335 220 66 1437 97 5 0 chr1 13021904 13022090 -269171574 + AluSx SINE Alu 1 187 -125 2234 105 0 0 chr1 13022481 13022775 -269170889 - AluSx SINE Alu -18 294 1 2149 151 30 30 chr1 13024314 13024678 -269168986 - THE1B LTR MaLR 0 364 1 2264 99 10 0 chr1 13025212 13025514 -269168150 - AluSx SINE Alu -7 305 1 200 210 109 80 chr1 13026141 13026279 -269167385 + L2 LINE L2 2487 2628 -686 2473 182 23 49 chr1 13026734 13027262 -269166402 - MLT2B2 LTR ERVL -1 514 1 1005 126 0 0 chr1 13027460 13027595 -269166069 + AluSq/x SINE Alu 1 135 -178 2015 142 0 0 chr1 13027595 13027916 -269165748 + AluSx SINE Alu 1 321 0 4116 134 17 36 chr1 13027916 13028609 -269165055 + L1PA16 LINE L1 5486 6165 -1 280 275 50 50 chr1 13029016 13029176 -269164488 - MER113 DNA MER1_type? -49 472 313 268 86 0 0 chr1 13029286 13029321 -269164343 + Alu SINE Alu 1 35 -264 390 268 100 45 chr1 13029810 13030015 -269163649 - MLT1J2 LTR MaLR 0 409 238 940 270 72 13 chr1 13030060 13030364 -269163300 - L1MC4a LINE L1 0 7808 7487 627 177 0 0 chr1 13030387 13030483 -269163181 - FLAM_A SINE Alu -26 116 21 2443 96 0 0 chr1 13030660 13030972 -269162692 - AluSq SINE Alu -1 312 1 1327 159 12 84 chr1 13030972 13031293 -269162371 - L1MB1 LINE L1 -14 6154 5857 7223 225 22 11 chr1 13031393 13033678 -269159986 + L1MB2 LINE L1 1457 3748 -2398 3799 178 12 0 chr1 13033800 13034481 -269159183 + L1MB2 LINE L1 5476 6164 -7 320 262 56 48 chr1 13034483 13034609 -269159055 + L1M4 LINE L1 77 203 -6656 977 243 49 52 chr1 13034829 13034899 -269158765 + L1M4 LINE L1 3437 3506 -3451 1492 106 0 5 chr1 13034899 13035107 -269158557 - AluSq SINE Alu -106 207 1 977 243 49 52 chr1 13035107 13035423 -269158241 + L1M4 LINE L1 3506 3822 -3135 1114 231 15 68 chr1 13035665 13035742 -269157922 + MER49 LTR ERV1 555 634 -289 1683 130 17 47 chr1 13035742 13035881 -269157783 + AluSx SINE Alu 7 149 -163 2277 71 3 0 chr1 13035881 13036177 -269157487 + AluY SINE Alu 1 297 -14 1683 130 17 47 chr1 13036177 13036337 -269157327 + AluSx SINE Alu 149 297 -15 1114 231 15 68 chr1 13036337 13036583 -269157081 + MER49 LTR ERV1 634 861 -62 767 145 38 23 chr1 13036598 13036729 -269156935 - FLAM_C SINE Alu 0 133 1 1232 101 6 6 chr1 13036743 13036921 -269156743 - AluSx SINE Alu -14 298 121 1966 134 0 3 chr1 13037077 13037376 -269156288 - AluSx SINE Alu -14 298 1 1014 79 0 29 chr1 13037376 13037515 -269156149 - AluSx SINE Alu -178 135 1 2498 55 0 10 chr1 13037851 13038163 -269155501 - AluY SINE Alu -2 309 1 189 74 0 0 chr1 13038885 13038912 -269154752 + (TAA)n Simple_repeat Simple_repeat 3 29 0 277 289 49 88 chr1 13039170 13039374 -269154290 + Charlie8 DNA MER1_type 9 204 -2213 2714 108 12 5 chr1 13040559 13040967 -269152697 + L1PB2 LINE L1 5741 6151 0 1264 304 121 55 chr1 13040968 13041886 -269151778 + L2 LINE L2 1697 2675 -639 1626 131 88 0 chr1 13042286 13042571 -269151093 - AluSx SINE Alu 0 308 1 433 264 37 68 chr1 13042757 13042809 -269150855 - MIR SINE MIR -4 258 206 1924 141 0 20 chr1 13042809 13043114 -269150550 - AluSx SINE Alu -8 304 6 433 264 37 68 chr1 13043114 13043224 -269150440 - MIR SINE MIR -56 206 101 559 274 6 12 chr1 13043431 13043595 -269150069 + LTR33 LTR ERVL 4 166 -355 1167 233 16 46 chr1 13043690 13044063 -269149601 + MER20B DNA MER1_type 417 778 -5 1079 224 75 25 chr1 13044066 13044387 -269149277 - MER58B DNA MER1_type -2 339 3 328 322 163 30 chr1 13045348 13045618 -269148046 + L2 LINE L2 3008 3313 0 243 229 66 0 chr1 13047179 13047240 -269146424 - LTR33 LTR ERVL -126 395 331 378 286 153 51 chr1 13047291 13047487 -269146177 - LTR33 LTR ERVL -305 216 1 1948 66 4 26 chr1 13047784 13048057 -269145607 + AluY SINE Alu 44 310 -1 778 205 7 0 chr1 13048436 13048587 -269145077 - MLT1B LTR MaLR -105 285 134 1101 255 19 11 chr1 13048588 13048912 -269144752 - MER93b LTR ERV1 0 373 61 464 180 60 0 chr1 13049021 13049121 -269144543 - MLT1B LTR MaLR -256 134 29 2520 119 11 16 chr1 13049126 13049503 -269144161 + THE1C LTR MaLR 1 375 0 498 278 46 29 chr1 13049695 13049868 -269143796 + MER5B DNA MER1_type 1 176 -2 402 247 17 107 chr1 13049880 13050058 -269143606 + MER5B DNA MER1_type 17 178 0 542 222 44 56 chr1 13050152 13050332 -269143332 + MER5B DNA MER1_type 1 178 0 477 157 0 0 chr1 13050597 13050667 -269142997 - AluSp SINE Alu -107 206 137 2127 110 0 13 chr1 13050804 13051114 -269142550 + AluSc SINE Alu 3 308 -1 858 111 0 0 chr1 13051140 13051257 -269142407 + AluSg SINE Alu 1 117 -193 180 111 0 0 chr1 13051400 13051427 -269142237 + (A)n Simple_repeat Simple_repeat 1 27 0 1729 94 45 0 chr1 13051524 13051769 -269141895 + AluSx SINE Alu 1 256 -56 424 251 86 74 chr1 13051835 13052010 -269141654 - L1MEd LINE L1 -5712 407 231 2345 75 3 0 chr1 13052098 13052404 -269141260 - AluY SINE Alu -3 308 2 310 89 0 0 chr1 13052506 13052551 -269141113 + HERV9 LTR ERV1 1005 1049 -7577 * 1960 105 7 14 chr1 13052538 13052832 -269140832 + HERV9 LTR ERV1 1275 4405 -3380 952 141 0 12 chr1 13052805 13052968 -269140696 + HERV9 LTR ERV1 1580 1740 -5156 * 648 49 0 0 chr1 13052966 13053047 -269140617 + HERV9 LTR ERV1 7626 7706 -693 * 2239 63 0 0 chr1 13053147 13053500 -269140164 - L1PA8A LINE L1 -596 5535 5183 2606 118 96 0 chr1 13053506 13053914 -269139750 - MER41C LTR ERV1 -107 447 1 18891 103 8 9 chr1 13053914 13056531 -269137133 - MER41C-int LTR ERV1 0 7756 5141 1636 112 0 9 chr1 13056531 13056763 -269136901 - MER41C-int LTR ERV1 -3133 4623 4394 * 2705 89 84 0 chr1 13056758 13057139 -269136525 - PRIMA41-int LTR ERV1 -4701 3055 2643 18206 88 2 0 chr1 13057239 13059634 -269134030 - L1P LINE L1 -3746 2400 1 6094 100 9 56 chr1 13059657 13061172 -269132492 - SVA Other Other -520 1385 433 270 268 21 0 chr1 13061360 13061457 -269132207 + (TA)n Simple_repeat Simple_repeat 2 100 0 2100 98 3 3 chr1 13061527 13061822 -269131842 + AluY SINE Alu 2 296 -15 743 131 0 0 chr1 13061827 13061934 -269131730 + U6 snRNA snRNA 1 107 0 4786 92 8 3 chr1 13061934 13062597 -269131067 + L1PA7 LINE L1 5483 6148 -6 2532 212 117 9 chr1 13062746 13063396 -269130268 - L1MC1 LINE L1 -13 6320 5601 272 184 161 11 chr1 13063441 13063528 -269130136 + L2 LINE L2 3163 3262 -10 1069 262 61 22 chr1 13064336 13064695 -269128969 - MER49 LTR ERV1 -1 922 550 533 161 0 113 chr1 13064693 13064785 -269128879 + MER4E LTR ERV1 38 139 -640 * 1932 133 3 0 chr1 13064785 13065071 -269128593 + AluSp SINE Alu 1 287 -26 266 65 0 22 chr1 13065074 13065120 -269128544 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 533 161 0 113 chr1 13065120 13065147 -269128517 + MER4E LTR ERV1 141 147 -632 22 35 0 0 chr1 13067628 13067657 -269126007 + AT_rich Low_complexity Low_complexity 1 29 0 580 228 0 0 chr1 13067665 13067779 -269125885 - FLAM_C SINE Alu -27 116 3 261 0 0 0 chr1 13068186 13068215 -269125449 + (A)n Simple_repeat Simple_repeat 1 29 0 1259 169 12 4 chr1 13068227 13068475 -269125189 - AluSx SINE Alu -45 267 18 1925 271 164 15 chr1 13069149 13069968 -269123696 + MER52A LTR ERV1 51 1089 -666 1607 257 17 6 chr1 13069956 13070314 -269123350 + MER52A LTR ERV1 1392 1753 -2 * 666 252 19 8 chr1 13070314 13070594 -269123070 + L1M1 LINE L1 3442 3724 -3841 698 248 0 12 chr1 13070594 13070755 -269122909 + AluJb SINE Alu 153 311 -1 222 270 14 68 chr1 13070843 13070917 -269122747 + L2 LINE L2 3219 3288 -25 817 72 0 72 chr1 13070925 13071085 -269122579 - AluSg/q SINE Alu 0 313 186 836 170 23 18 chr1 13074246 13074417 -269119247 - AluSx SINE Alu -15 297 126 1727 49 22 4 chr1 13074417 13074642 -269119022 - L1PA4 LINE L1 -4 6151 5923 358 64 0 0 chr1 13074642 13074689 -269118975 + L1PA4 LINE L1 5885 5931 -223 903 141 0 0 chr1 13074689 13074824 -269118840 - AluSx SINE Alu -177 135 1 1398 118 0 5 chr1 13074997 13075208 -269118456 - AluSg SINE Alu -100 210 1 1718 123 4 14 chr1 13075327 13075603 -269118061 - AluSx SINE Alu -39 273 1 371 115 0 0 chr1 13075612 13075664 -269118000 - Alu SINE Alu -249 53 2 286 278 103 16 chr1 13076004 13076130 -269117534 - MIR SINE MIR -9 253 117 1374 170 51 20 chr1 13076871 13077165 -269116499 + AluJo SINE Alu 1 303 -9 1570 166 7 33 chr1 13077165 13077466 -269116198 + AluSp SINE Alu 1 294 -19 1903 155 0 0 chr1 13078716 13079020 -269114644 + AluSx SINE Alu 1 304 -8 1115 125 0 0 chr1 13079506 13079666 -269113998 + AluSx SINE Alu 1 160 -152 444 294 48 0 chr1 13080084 13080210 -269113454 - MIR SINE MIR -12 250 119 5215 72 25 53 chr1 13083245 13084067 -269109597 - SVA Other Other -520 866 68 1220 0 0 53 chr1 13084067 13084257 -269109407 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 820 191 7 0 chr1 13084263 13084399 -269109265 - AluSq/x SINE Alu -171 142 6 196 293 67 40 chr1 13084574 13084649 -269109015 - L2 LINE L2 -27 3245 3169 2474 221 104 19 chr1 13084701 13085367 -269108297 + L1MC1 LINE L1 5601 6322 -11 1701 172 7 3 chr1 13085368 13085493 -269108171 + AluSx SINE Alu 1 124 -188 225 0 0 0 chr1 13085493 13085518 -269108146 + (TAA)n Simple_repeat Simple_repeat 2 26 0 1701 172 7 3 chr1 13085518 13085694 -269107970 + AluSx SINE Alu 124 303 -9 1582 183 0 28 chr1 13085699 13086038 -269107626 + AluJb SINE Alu 1 331 0 1960 117 0 3 chr1 13086207 13086490 -269107174 - AluSg SINE Alu -28 282 1 1579 128 43 4 chr1 13086611 13086868 -269106796 - AluSg SINE Alu -43 267 1 1975 138 0 3 chr1 13086879 13087184 -269106480 - AluSp SINE Alu -9 304 1 392 240 78 16 chr1 13087519 13087648 -269106016 - MIR SINE MIR -9 253 117 1395 185 48 7 chr1 13088389 13088680 -269104984 + AluJo SINE Alu 1 303 -9 1488 166 13 36 chr1 13088680 13088981 -269104683 + AluSp SINE Alu 1 294 -19 1450 156 0 50 chr1 13090243 13090564 -269103100 + AluSx SINE Alu 1 305 -7 1807 153 0 3 chr1 13091050 13091344 -269102320 + AluSx SINE Alu 1 293 -19 750 174 22 7 chr1 13091357 13091495 -269102169 - FLAM_C SINE Alu -1 142 3 1675 130 70 0 chr1 13092557 13092842 -269100822 - AluSx SINE Alu -7 305 1 525 188 31 6 chr1 13093840 13094000 -269099664 + CT-rich Low_complexity Low_complexity 2 165 0 1282 195 11 35 chr1 13094000 13094287 -269099377 - AluJb SINE Alu -32 280 1 1562 177 0 0 chr1 13094404 13094664 -269099000 + AluSx SINE Alu 1 260 -52 750 214 0 19 chr1 13095102 13095256 -269098408 - AluSg/x SINE Alu -16 296 146 1297 214 42 11 chr1 13095331 13095476 -269098188 - AluJb SINE Alu -4 298 159 1612 169 0 14 chr1 13095476 13095754 -269097910 + AluSx SINE Alu 7 280 -32 1297 214 42 11 chr1 13095754 13095893 -269097771 - AluJb SINE Alu -143 159 5 1646 163 14 0 chr1 13096473 13096761 -269096903 + AluSx SINE Alu 5 296 -16 2924 198 60 2 chr1 13097131 13097701 -269095963 + LTR26 LTR ERV1 1 603 0 488 246 8 8 chr1 13097834 13097964 -269095700 + MER65A LTR ERV1 211 340 -105 888 205 164 17 chr1 13098184 13098477 -269095187 + LTR44 LTR ERV1 1 336 -183 270 176 0 0 chr1 13098565 13098616 -269095048 + Alu SINE Alu 250 300 -1 1652 158 11 0 chr1 13098628 13098900 -269094764 + AluSc SINE Alu 9 283 -26 1880 145 0 3 chr1 13099282 13099597 -269094067 - AluSc SINE Alu 0 314 1 232 197 16 0 chr1 13099652 13099713 -269093951 + (TTTA)n Simple_repeat Simple_repeat 3 64 0 1946 134 3 0 chr1 13099715 13100006 -269093658 - AluSq SINE Alu -21 292 1 2015 133 3 9 chr1 13100549 13100864 -269092800 + AluSp SINE Alu 1 313 0 929 218 5 9 chr1 13101052 13101272 -269092392 + L1MA4 LINE L1 5473 5691 -609 759 126 0 0 chr1 13101272 13101375 -269092289 - AluSq/x SINE Alu -210 103 1 2796 194 27 5 chr1 13101375 13101928 -269091736 + L1MA4 LINE L1 5686 6250 -50 1379 151 0 5 chr1 13101928 13102146 -269091518 + AluSq SINE Alu 1 217 -96 1646 166 0 17 chr1 13102457 13102813 -269090851 + AluSx SINE Alu 1 312 0 1448 168 67 18 chr1 13103898 13104183 -269089481 - AluSg SINE Alu -11 299 1 184 227 68 0 chr1 13104457 13104501 -269089163 + L2 LINE L2 3262 3308 -5 1837 164 0 0 chr1 13105540 13105845 -269087819 + AluSx SINE Alu 1 305 -7 1672 179 0 3 chr1 13106329 13106625 -269087039 + AluSx SINE Alu 1 295 -17 749 161 21 28 chr1 13106634 13106777 -269086887 - FLAM_C SINE Alu 0 143 2 182 230 27 81 chr1 13107965 13108039 -269085625 + L2 LINE L2 3202 3271 -1 2096 116 3 0 chr1 13109700 13110011 -269083653 + AluSx SINE Alu 1 312 0 1266 234 0 7 chr1 13110152 13110460 -269083204 + AluJb SINE Alu 1 306 -6 854 206 8 124 chr1 13110547 13110680 -269082984 + AluJo SINE Alu 3 93 -219 2024 151 0 0 chr1 13110680 13110991 -269082673 + AluSx SINE Alu 1 311 -1 854 206 8 124 chr1 13110991 13111114 -269082550 + AluJo SINE Alu 93 229 -83 1490 168 91 131 chr1 13111524 13112065 -269081599 - LTR44 LTR ERV1 0 519 1 500 243 97 5 chr1 13112242 13112427 -269081237 - MER65A LTR ERV1 -33 412 211 2964 193 60 2 chr1 13112562 13113132 -269080532 - LTR26 LTR ERV1 0 603 1 27 0 0 0 chr1 13113326 13113353 -269080311 + AT_rich Low_complexity Low_complexity 1 27 0 1653 161 14 0 chr1 13113510 13113796 -269079868 - AluSx SINE Alu -22 290 1 789 172 0 0 chr1 13116103 13116225 -269077439 + FLAM_C SINE Alu 5 126 -17 1648 164 0 4 chr1 13116241 13116522 -269077142 - AluSx SINE Alu -32 280 1 623 174 30 8 chr1 13116551 13116683 -269076981 - LTR5 LTR ERVK 0 969 835 2863 194 18 10 chr1 13116803 13117421 -269076243 - LTR5 LTR ERVK -346 623 1 815 185 20 20 chr1 13117421 13117572 -269076092 + AluJb SINE Alu 143 293 -19 1802 146 3 0 chr1 13117813 13118101 -269075563 + AluSx SINE Alu 1 289 -23 246 237 17 0 chr1 13118110 13118169 -269075495 - MER94 DNA DNA -62 72 13 1823 147 14 0 chr1 13118781 13119066 -269074598 - AluSg SINE Alu -21 289 1 272 112 49 55 chr1 13119074 13119149 -269074515 + LTR45B LTR ERV1 412 525 0 252 247 34 22 chr1 13119329 13119418 -269074246 + MER57-int LTR ERV1 6065 6154 -1383 1632 167 86 134 chr1 13120217 13120762 -269072902 - LTR44 LTR ERV1 0 519 1 671 209 81 24 chr1 13120908 13121119 -269072545 - MER65A LTR ERV1 -12 433 211 2904 206 45 2 chr1 13121254 13121832 -269071832 - LTR26 LTR ERV1 0 603 1 1747 164 7 0 chr1 13122200 13122510 -269071154 - AluSx SINE Alu 0 312 1 1280 185 3 100 chr1 13123083 13123204 -269070460 + AluJb SINE Alu 5 136 -176 1493 182 0 21 chr1 13123204 13123490 -269070174 - AluSx SINE Alu -20 292 13 1280 185 3 100 chr1 13123490 13123709 -269069955 + AluJb SINE Alu 136 312 0 818 188 0 0 chr1 13123790 13123934 -269069730 + AluSg/x SINE Alu 138 281 -29 225 0 0 0 chr1 13124360 13124385 -269069279 + (TC)n Simple_repeat Simple_repeat 2 26 0 1767 161 23 0 chr1 13124385 13124690 -269068974 - AluSx SINE Alu 0 312 1 805 147 0 63 chr1 13124815 13124958 -269068706 + AluJo SINE Alu 9 142 -170 318 263 98 8 chr1 13126698 13126831 -269066833 - L1M4 LINE L1 -2194 3952 3808 1686 138 4 0 chr1 13126855 13127116 -269066548 - AluSp SINE Alu -2 311 50 857 207 34 15 chr1 13127116 13127459 -269066205 - GSATII Satellite centromeric -16 349 1 1802 152 14 0 chr1 13128394 13128684 -269064980 + AluSg SINE Alu 1 294 -16 1941 135 3 0 chr1 13129342 13129638 -269064026 - AluSx SINE Alu -15 297 1 529 268 71 94 chr1 13129750 13129934 -269063730 - MIR SINE MIR 0 262 84 1583 88 5 0 chr1 13129934 13130150 -269063514 - AluY SINE Alu -13 298 82 529 268 71 94 chr1 13130150 13130219 -269063445 - MIR SINE MIR -178 84 15 650 311 57 36 chr1 13130343 13130520 -269063144 - L1M4 LINE L1 -2172 3974 3802 2067 129 3 0 chr1 13130520 13130830 -269062834 - AluSp SINE Alu -2 311 1 650 311 57 36 chr1 13130830 13130895 -269062769 - L1M4 LINE L1 -2344 3802 3740 1781 162 33 0 chr1 13130895 13131197 -269062467 + AluSx SINE Alu 1 312 0 650 311 57 36 chr1 13131197 13131339 -269062325 - L1M4 LINE L1 -2406 3740 3581 445 167 0 0 chr1 13131351 13131417 -269062247 + AluS SINE Alu 2 67 -242 3295 192 3 7 chr1 13131624 13132227 -269061437 - HERVE LTR ERV1 -6230 1583 983 1032 42 60 0 chr1 13133074 13133241 -269060423 + CT-rich Low_complexity Low_complexity 4 180 0 237 65 0 0 chr1 13133264 13133295 -269060369 + (TCCC)n Simple_repeat Simple_repeat 1 31 0 1502 211 3 10 chr1 13133295 13133599 -269060065 - AluJb SINE Alu -10 302 1 333 283 44 18 chr1 13135064 13135177 -269058487 - L1M4 LINE L1 -3104 3042 2927 29 0 0 0 chr1 13135191 13135220 -269058444 + AT_rich Low_complexity Low_complexity 1 29 0 370 178 0 4 chr1 13135560 13135635 -269058029 - AluS SINE Alu -250 58 6 817 209 14 19 chr1 13135691 13135872 -269057792 - AluSg/x SINE Alu -13 296 115 324 0 0 0 chr1 13135872 13135908 -269057756 + (TTA)n Simple_repeat Simple_repeat 2 37 0 817 209 14 19 chr1 13135908 13135941 -269057723 - AluSg/x SINE Alu -194 115 83 383 186 0 0 chr1 13135941 13136000 -269057664 - AluSc SINE Alu -51 248 190 843 165 8 0 chr1 13136000 13136133 -269057531 - AluSq/x SINE Alu -176 136 3 645 193 0 0 chr1 13139587 13139701 -269053963 - AluJb SINE Alu -196 116 3 1432 203 3 3 chr1 13140116 13140411 -269053253 - AluSx SINE Alu 0 312 18 321 314 16 24 chr1 13141122 13141246 -269052418 + MER52A LTR ERV1 51 173 -1582 1577 198 38 3 chr1 13141290 13141581 -269052083 + MER52A LTR ERV1 1099 1385 -71 919 208 38 20 chr1 13141579 13142993 -269050671 + GSATII Satellite centromeric 1 1439 -120 * 444 82 0 0 chr1 13143006 13143067 -269050597 + (TA)n Simple_repeat Simple_repeat 2 62 0 228 289 11 0 chr1 13144004 13144094 -269049570 + (CTA)n Simple_repeat Simple_repeat 1 91 0 282 319 26 0 chr1 13144362 13144478 -269049186 + Tigger6 DNA MER2_type 1114 1232 -365 1462 142 9 0 chr1 13144478 13144704 -269048960 + AluSg SINE Alu 1 228 -82 14841 181 15 15 chr1 13144704 13145088 -269048576 - HERV3 LTR ERV1 -2202 6224 5842 1914 126 3 23 chr1 13145088 13145398 -269048266 + AluY SINE Alu 1 304 -7 14841 181 15 15 chr1 13145398 13147536 -269046128 - HERV3 LTR ERV1 -2584 5842 3701 487 160 20 10 chr1 13147538 13147638 -269046026 - LTR5 LTR ERVK -1 968 868 6726 210 57 18 chr1 13147643 13149349 -269044315 - HERV3 LTR ERV1 -6778 1648 1 2577 116 122 59 chr1 13149349 13149763 -269043901 - LTR61 LTR ERV1 -1 594 135 221 0 35 0 chr1 13149763 13149792 -269043872 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2577 116 122 59 chr1 13149792 13149936 -269043728 - LTR61 LTR ERV1 -460 135 1 1995 150 0 0 chr1 13150007 13150313 -269043351 + AluSx SINE Alu 5 310 -2 945 224 35 9 chr1 13150400 13150628 -269043036 + AluJb SINE Alu 61 294 -18 1683 182 3 3 chr1 13151657 13152025 -269041639 - AluSx SINE Alu 0 368 1 195 293 67 40 chr1 13152195 13152270 -269041394 - L2 LINE L2 -27 3245 3169 2675 209 98 21 chr1 13152292 13152991 -269040673 + L1MC1 LINE L1 5583 6322 -11 1901 135 0 50 chr1 13152992 13153311 -269040353 + AluSx SINE Alu 1 303 -9 1650 169 0 28 chr1 13153316 13153654 -269040010 + AluJb SINE Alu 1 330 0 1971 109 0 3 chr1 13153823 13154106 -269039558 - AluSg SINE Alu -28 282 1 1658 117 43 4 chr1 13154227 13154484 -269039180 - AluSg SINE Alu -43 267 1 2100 117 0 3 chr1 13154495 13154802 -269038862 - AluSp SINE Alu -7 306 1 356 256 78 16 chr1 13155137 13155266 -269038398 - MIR SINE MIR -9 253 117 1405 188 48 7 chr1 13156007 13156300 -269037364 + AluJo SINE Alu 1 305 -7 1634 159 7 33 chr1 13156300 13156601 -269037063 + AluSp SINE Alu 1 294 -19 1892 157 0 0 chr1 13157861 13158166 -269035498 + AluSx SINE Alu 1 305 -7 1874 142 0 3 chr1 13158652 13158948 -269034716 + AluSx SINE Alu 1 295 -17 721 165 23 23 chr1 13158968 13159101 -269034563 - FLAM_C SINE Alu 0 133 1 1687 128 69 0 chr1 13160162 13160450 -269033214 - AluSx SINE Alu -4 308 1 426 201 34 7 chr1 13161452 13161601 -269032063 + CT-rich Low_complexity Low_complexity 2 154 0 1295 180 22 32 chr1 13161601 13161879 -269031785 - AluJb SINE Alu -32 280 6 1456 194 11 0 chr1 13162000 13162273 -269031391 + AluSx SINE Alu 1 276 -36 838 183 0 0 chr1 13162714 13162851 -269030813 - AluSg/x SINE Alu -36 276 140 1301 189 3 59 chr1 13162927 13163111 -269030553 - AluJb SINE Alu -19 293 131 1643 153 0 42 chr1 13163111 13163419 -269030245 + AluSx SINE Alu 1 295 -17 1301 189 3 59 chr1 13163419 13163540 -269030124 - AluJb SINE Alu -181 131 5 307 292 53 26 chr1 13163547 13163660 -269030004 + L1M4 LINE L1 2927 3042 -3104 1759 161 23 0 chr1 13164113 13164417 -269029247 + AluSx SINE Alu 1 311 -1 736 199 7 0 chr1 13164866 13165002 -269028662 - AluSg/x SINE Alu -36 276 140 1381 172 3 71 chr1 13165069 13165270 -269028394 - AluJb SINE Alu -4 308 136 1539 149 10 43 chr1 13165270 13165572 -269028092 + AluSx SINE Alu 1 292 -20 1381 172 3 71 chr1 13165572 13165696 -269027968 - AluJb SINE Alu -176 136 5 1650 153 10 23 chr1 13166267 13166567 -269027097 + AluSx SINE Alu 1 296 -16 2753 199 65 5 chr1 13166938 13167507 -269026157 + LTR26 LTR ERV1 1 603 0 507 231 82 34 chr1 13167640 13167848 -269025816 + MER65A LTR ERV1 211 428 -17 1608 166 90 134 chr1 13167995 13168538 -269025126 + LTR44 LTR ERV1 1 519 0 246 173 93 53 chr1 13169611 13169686 -269023978 - LTR45B LTR ERV1 0 489 412 1830 157 14 0 chr1 13169696 13169990 -269023674 + AluSg SINE Alu 3 300 -10 1816 136 3 0 chr1 13170653 13170940 -269022724 - AluSx SINE Alu -24 288 1 1599 143 6 89 chr1 13171185 13171360 -269022304 - AluJb SINE Alu -19 293 154 1773 142 0 4 chr1 13171360 13171641 -269022023 + AluSx SINE Alu 1 280 -32 1599 143 6 89 chr1 13171641 13171780 -269021884 - AluJb SINE Alu -158 154 5 300 286 62 27 chr1 13173520 13173632 -269020032 + L1M4 LINE L1 2927 3042 -3104 1737 127 14 0 chr1 13174089 13174364 -269019300 + AluSx SINE Alu 1 279 -33 315 0 0 0 chr1 13174364 13174399 -269019265 + (CAA)n Simple_repeat Simple_repeat 1 35 0 1819 136 4 0 chr1 13174767 13175109 -269018555 + AluSq SINE Alu 13 355 0 1912 138 0 3 chr1 13175164 13175479 -269018185 + AluSc SINE Alu 1 314 0 1812 145 0 11 chr1 13175831 13176151 -269017513 - AluSc SINE Alu 0 317 1 343 129 16 16 chr1 13176152 13176214 -269017450 - Alu SINE Alu 0 308 247 887 201 167 17 chr1 13176292 13176580 -269017084 - LTR44 LTR ERV1 -183 336 6 2819 207 60 2 chr1 13176668 13177238 -269016426 - LTR26 LTR ERV1 0 603 1 1547 169 10 24 chr1 13177608 13177904 -269015760 - AluSx SINE Alu -16 296 5 1403 188 3 52 chr1 13178481 13178602 -269015062 + AluJb SINE Alu 5 130 -182 1687 154 0 39 chr1 13178602 13178907 -269014757 - AluSx SINE Alu -19 293 1 1403 188 3 52 chr1 13178907 13179093 -269014571 + AluJb SINE Alu 130 297 -15 848 161 0 0 chr1 13179175 13179312 -269014352 + AluSg/x SINE Alu 140 276 -36 1721 163 20 0 chr1 13179749 13180055 -269013609 - AluSx SINE Alu 0 312 1 1209 187 112 11 chr1 13180635 13180756 -269012908 + AluJb SINE Alu 5 112 -200 1643 159 0 37 chr1 13180756 13181051 -269012613 - AluSx SINE Alu -22 290 7 1209 187 112 11 chr1 13181051 13181196 -269012468 + AluJb SINE Alu 112 298 -14 736 181 0 56 chr1 13181271 13181431 -269012233 + AluSg/x SINE Alu 146 296 -16 1562 177 0 0 chr1 13181869 13182129 -269011535 - AluSx SINE Alu -52 260 1 1332 192 7 31 chr1 13182246 13182533 -269011131 + AluJb SINE Alu 1 280 -32 492 194 31 6 chr1 13182533 13182693 -269010971 + GA-rich Low_complexity Low_complexity 2 165 0 1733 121 71 0 chr1 13183691 13183972 -269009692 + AluSx SINE Alu 1 301 -11 727 168 21 28 chr1 13185033 13185176 -269008488 + FLAM_C SINE Alu 2 143 0 1672 179 0 3 chr1 13185185 13185481 -269008183 - AluSx SINE Alu -17 295 1 1847 161 0 0 chr1 13185965 13186264 -269007400 - AluSx SINE Alu -8 304 6 1640 159 7 33 chr1 13187529 13187831 -269005833 - AluSp SINE Alu -19 294 1 1380 190 48 7 chr1 13187831 13188119 -269005545 - AluJo SINE Alu -10 302 3 379 248 78 16 chr1 13188868 13188997 -269004667 + MIR SINE MIR 117 253 -9 1915 141 3 3 chr1 13189332 13189636 -269004028 + AluSp SINE Alu 1 304 -9 1620 124 43 4 chr1 13189650 13189907 -269003757 + AluSg SINE Alu 1 267 -43 1917 120 0 3 chr1 13190028 13190311 -269003353 + AluSg SINE Alu 1 282 -28 1340 187 0 0 chr1 13190480 13190733 -269002931 - AluJb SINE Alu 0 310 58 1474 170 0 57 chr1 13190737 13191020 -269002644 - AluSx SINE Alu -45 267 1 2472 219 104 19 chr1 13191021 13191687 -269001977 - L1MC1 LINE L1 -11 6322 5601 196 293 67 40 chr1 13191739 13191814 -269001850 + L2 LINE L2 3169 3245 -27 833 194 7 0 chr1 13191987 13192126 -269001538 + AluSq/x SINE Alu 3 142 -171 22025 77 1 0 chr1 13192131 13194963 -268998701 + L1PA7 LINE L1 8 2840 -3306 1553 49 0 0 chr1 13194959 13195144 -268998520 - L1PA4 LINE L1 -172 5983 5799 * 1082 54 0 27 chr1 13195144 13195287 -268998377 + L1PA4 LINE L1 6013 6155 0 * 18637 83 17 14 chr1 13195281 13198770 -268994894 + L1PA7 LINE L1 2827 6321 0 1160 82 0 22 chr1 13198586 13198830 -268994834 + (GAAA)n Simple_repeat Simple_repeat 1 240 0 396 111 0 0 chr1 13198843 13198906 -268994758 + (GGGAA)n Simple_repeat Simple_repeat 2 64 0 1369 265 44 40 chr1 13199029 13199226 -268994438 + MER41E LTR ERV1 13 208 -304 1984 122 3 0 chr1 13199226 13199540 -268994124 + AluSp SINE Alu 1 315 0 1369 265 44 40 chr1 13199540 13199816 -268993848 + MER41E LTR ERV1 208 490 -22 2615 244 9 63 chr1 13199970 13200916 -268992748 - L1 LINE L1 -1297 6268 5374 935 250 11 0 chr1 13200972 13201310 -268992354 - L1 LINE L1 -3780 3785 3441 5700 226 35 78 chr1 13201313 13202939 -268990725 - MER52A LTR ERV1 -6 1749 61 1278 247 0 0 chr1 13203648 13203935 -268989729 + AluSx SINE Alu 19 305 -7 440 210 17 42 chr1 13204319 13204438 -268989226 + FLAM_C SINE Alu 1 116 -17 21 71 0 0 chr1 13204446 13204488 -268989176 + AT_rich Low_complexity Low_complexity 1 42 0 630 181 0 2 chr1 13207777 13208015 -268985649 + AluSx SINE Alu 3 292 -17 735 237 0 0 chr1 13208034 13208203 -268985461 + AluSx SINE Alu 129 297 -15 1838 139 3 0 chr1 13208279 13208566 -268985098 + AluSq SINE Alu 1 288 -25 26 0 0 0 chr1 13208864 13208890 -268984774 + AT_rich Low_complexity Low_complexity 1 26 0 1359 179 7 52 chr1 13209932 13210240 -268983424 - AluSx SINE Alu -14 298 5 1687 167 17 0 chr1 13210820 13211114 -268982550 + AluY SINE Alu 3 301 -10 1336 71 0 16 chr1 13211130 13211439 -268982225 + (GAAA)n Simple_repeat Simple_repeat 1 303 0 803 260 0 10 chr1 13211440 13211636 -268982028 + AluJb SINE Alu 16 209 -103 863 229 37 0 chr1 13213621 13213839 -268979825 + AluSg/x SINE Alu 85 310 -2 1848 164 0 0 chr1 13214368 13214672 -268978992 + AluSc SINE Alu 1 304 -5 3545 202 24 48 chr1 13214842 13215816 -268977848 + LTR5 LTR ERVK 6 955 -14 32587 188 29 29 chr1 13215828 13223352 -268970312 + HERVK LTR ERVK 1 7392 -25 3398 190 22 58 chr1 13223361 13224300 -268969364 + LTR5 LTR ERVK 1 906 -63 979 199 31 49 chr1 13224585 13224871 -268968793 + LTR5 LTR ERVK 675 955 -14 2287 159 36 5 chr1 13224898 13225288 -268968376 + LTR57 LTR ERVL 3 404 -7 288 305 55 8 chr1 13225991 13226119 -268967545 + MIR SINE MIR 117 250 -12 3264 177 11 36 chr1 13226177 13226493 -268967171 + MER49 LTR ERV1 1 294 -629 2156 108 0 0 chr1 13226493 13226790 -268966874 - AluSg SINE Alu -13 297 1 3264 177 11 36 chr1 13226790 13227110 -268966554 + MER49 LTR ERV1 294 621 -302 404 230 0 104 chr1 13227122 13227257 -268966407 + AluSq/x SINE Alu 10 130 -173 542 131 61 0 chr1 13227631 13227730 -268965934 + pTR5 LTR ERV1 1028 1132 -1306 * 784 171 55 61 chr1 13227728 13227892 -268965772 - pTR5 LTR ERV1 -1533 905 743 605 200 81 142 chr1 13227923 13228233 -268965431 - LTR16A1 LTR ERVL -106 351 61 1987 130 0 13 chr1 13228498 13228634 -268965030 + AluSq SINE Alu 1 137 -176 2170 98 0 7 chr1 13228634 13228930 -268964734 + AluSg1 SINE Alu 2 295 -14 1987 130 0 13 chr1 13228930 13229094 -268964570 + AluSq SINE Alu 137 297 -16 197 33 33 0 chr1 13229784 13229814 -268963850 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 332 67 22 0 chr1 13229816 13229861 -268963803 - AluSp/q SINE Alu -20 283 238 6426 121 139 59 chr1 13229864 13231363 -268962301 - pTR5 LTR ERV1 0 2438 745 442 202 0 39 chr1 13231370 13231474 -268962190 - AluSg/x SINE Alu -76 236 137 2394 119 5 31 chr1 13231502 13232067 -268961597 + MER51A LTR ERV1 1 634 0 335 227 0 109 chr1 13232782 13232910 -268960754 + L2 LINE L2 2946 3059 -254 431 254 124 46 chr1 13233314 13233600 -268960064 - MLT1G1 LTR MaLR -274 275 1 2331 103 0 7 chr1 13233618 13233920 -268959744 + AluSx SINE Alu 1 300 -12 2293 103 3 25 chr1 13233931 13234250 -268959414 + AluSx SINE Alu 1 312 0 2027 180 73 47 chr1 13234416 13234781 -268958883 - LOR1b LTR ERV1 0 461 80 2214 106 33 0 chr1 13234781 13235084 -268958580 + AluSp SINE Alu 1 313 0 2027 180 73 47 chr1 13235084 13235167 -268958497 - LOR1b LTR ERV1 -381 80 1 219 146 122 0 chr1 13235215 13235256 -268958408 + MER91B DNA MER1_type 18 63 -127 321 271 0 0 chr1 13235544 13235614 -268958050 + MER58 DNA MER1_type 3 72 -143 1382 181 0 0 chr1 13235614 13235857 -268957807 + L1MA9 LINE L1 5884 6126 -186 1078 174 11 26 chr1 13235861 13236051 -268957613 + AluJo SINE Alu 1 187 -125 4005 95 182 129 chr1 13236057 13237351 -268956313 + pTR5 LTR ERV1 743 2438 0 1581 149 4 4 chr1 13237363 13237605 -268956059 + AluSx SINE Alu 64 305 -7 746 215 49 18 chr1 13237605 13237768 -268955896 + AluJo/FRAM SINE Alu 134 301 -11 423 246 94 31 chr1 13237812 13238003 -268955661 + L1MA10 LINE L1 6119 6321 -13 306 208 9 51 chr1 13238008 13238124 -268955540 + MER58 DNA MER1_type 98 2409 -11 2441 81 0 3 chr1 13238533 13238841 -268954823 + AluY SINE Alu 1 307 -4 1221 132 52 5 chr1 13238904 13239116 -268954548 - AluSx SINE Alu -21 291 70 429 194 14 0 chr1 13239224 13239296 -268954368 - AluSx SINE Alu -238 74 2 275 0 29 0 chr1 13239574 13239609 -268954055 + (TTA)n Simple_repeat Simple_repeat 2 37 0 2288 115 0 3 chr1 13239698 13240010 -268953654 + AluSx SINE Alu 1 311 -1 196 241 74 102 chr1 13240071 13240129 -268953535 + L3 LINE CR1 1380 1436 -141 1637 135 34 4 chr1 13240129 13240405 -268953259 + AluSx SINE Alu 40 322 0 196 241 74 102 chr1 13240405 13240453 -268953211 + L3 LINE CR1 1436 1484 -93 355 222 28 0 chr1 13241143 13241215 -268952449 + MIR SINE MIR 72 145 -63 2600 50 0 0 chr1 13241233 13241530 -268952134 + AluY SINE Alu 1 297 -14 995 170 25 0 chr1 13241531 13241690 -268951974 + AluSg/x SINE Alu 133 295 -15 1042 252 8 0 chr1 13241690 13241936 -268951728 + MER49 LTR ERV1 614 861 -62 772 152 38 23 chr1 13241950 13242082 -268951582 - FLAM_C SINE Alu -8 135 2 2293 91 0 3 chr1 13242097 13242393 -268951271 - AluSc SINE Alu -14 295 1 1819 177 75 60 chr1 13242644 13243018 -268950646 + L1PA15 LINE L1 5688 6072 -93 1773 148 59 3 chr1 13243018 13243308 -268950356 + AluSx SINE Alu 1 306 -6 1819 177 75 60 chr1 13243308 13243397 -268950267 + L1PA15 LINE L1 6072 6158 -7 1565 242 90 0 chr1 13243394 13243783 -268949881 - L1M3f LINE L1 -4362 966 543 * 644 123 41 23 chr1 13244596 13244840 -268948824 + AluSx SINE Alu 1 309 0 2312 116 3 0 chr1 13244842 13245152 -268948512 + AluSp SINE Alu 1 311 -2 621 212 9 0 chr1 13245563 13245676 -268947988 + AluJb SINE Alu 3 116 -196 182 230 27 81 chr1 13247260 13247334 -268946330 + L2 LINE L2 3202 3271 -1 182 230 27 81 chr1 13248262 13248336 -268945328 + L2 LINE L2 3202 3271 -1 2450 48 10 7 chr1 13249891 13250186 -268943478 + AluY SINE Alu 1 296 -15 2094 129 3 3 chr1 13250301 13250610 -268943054 + AluSx SINE Alu 1 309 -3 1401 240 0 7 chr1 13250745 13251053 -268942611 + AluJb SINE Alu 1 306 -6 1311 220 10 45 chr1 13251138 13251273 -268942391 + AluJo SINE Alu 1 139 -163 2059 147 3 13 chr1 13251273 13251409 -268942255 + AluSx SINE Alu 1 137 -175 2522 60 0 0 chr1 13251409 13251711 -268941953 + AluY SINE Alu 1 302 -9 2059 147 3 13 chr1 13251711 13251886 -268941778 + AluSx SINE Alu 137 309 -3 1311 220 10 45 chr1 13251886 13252063 -268941601 + AluJo SINE Alu 139 302 0 2386 105 0 0 chr1 13252112 13252416 -268941248 + AluSg SINE Alu 1 304 -6 1088 149 0 0 chr1 13252729 13252890 -268940774 - AluSp SINE Alu -15 298 138 2292 103 0 3 chr1 13253449 13253749 -268939915 + AluSc SINE Alu 1 299 -10 2252 85 7 0 chr1 13253763 13254044 -268939620 + AluY SINE Alu 1 283 -28 207 0 0 0 chr1 13254047 13254070 -268939594 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2254 110 7 0 chr1 13254100 13254401 -268939263 + AluSg SINE Alu 1 303 -7 664 228 36 30 chr1 13254409 13254576 -268939088 + AluSg/x SINE Alu 142 309 -3 195 42 0 0 chr1 13254792 13254816 -268938848 + (GGCTG)n Simple_repeat Simple_repeat 2 25 0 631 211 91 24 chr1 13254893 13255102 -268938562 + MER65A LTR ERV1 211 433 -12 2062 150 6 10 chr1 13255261 13255574 -268938090 + AluSx SINE Alu 1 312 0 1449 181 70 7 chr1 13255574 13256028 -268937636 + LTR44 LTR ERV1 7 519 0 1626 191 11 0 chr1 13256070 13256367 -268937297 + AluJb SINE Alu 7 306 0 1749 115 4 0 chr1 13256367 13256602 -268937062 + AluSp SINE Alu 1 236 -77 183 42 0 0 chr1 13256707 13256731 -268936933 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 846 151 0 8 chr1 13256733 13256859 -268936805 - FRAM SINE Alu -18 158 34 1720 156 3 62 chr1 13257028 13257349 -268936315 + AluJb SINE Alu 11 312 0 2035 148 3 0 chr1 13257431 13257728 -268935936 + AluSx SINE Alu 1 298 -14 1982 144 11 0 chr1 13257810 13258095 -268935569 - AluSx SINE Alu -24 288 1 647 265 86 97 chr1 13258349 13258522 -268935142 - LTR1B LTR ERV1 -302 524 351 2196 89 0 59 chr1 13258522 13258846 -268934818 + AluSx SINE Alu 2 306 -6 647 265 86 97 chr1 13258846 13259159 -268934505 - LTR1B LTR ERV1 -475 351 43 1428 121 43 0 chr1 13259186 13259393 -268934271 + AluSc SINE Alu 88 303 -6 1879 225 45 73 chr1 13259394 13260062 -268933602 + MER72-int LTR ERV1 6110 6758 0 1148 163 19 54 chr1 13260063 13260076 -268933588 + MER72 LTR ERV1 1 13 -709 2436 75 3 7 chr1 13260076 13260381 -268933283 + AluSg1 SINE Alu 1 304 -5 1148 163 19 54 chr1 13260381 13260625 -268933039 + MER72 LTR ERV1 13 249 -473 285 168 53 116 chr1 13260606 13260656 -268933008 + MER72 LTR ERV1 608 651 -71 * 2189 101 17 0 chr1 13260656 13260952 -268932712 - AluSx SINE Alu -11 301 1 285 168 53 116 chr1 13260952 13260996 -268932668 + MER72 LTR ERV1 651 696 -26 4384 137 31 53 chr1 13261096 13261298 -268932366 - MER4E LTR ERV1 0 779 574 2407 110 0 0 chr1 13261298 13261608 -268932056 + AluSx SINE Alu 2 311 -1 4384 137 31 53 chr1 13261608 13261619 -268932045 - MER4E LTR ERV1 -205 574 564 2037 146 0 19 chr1 13261619 13261935 -268931729 + AluSx SINE Alu 1 310 -2 4384 137 31 53 chr1 13261935 13262516 -268931148 - MER4E LTR ERV1 -215 564 1 2098 128 3 3 chr1 13262684 13262989 -268930675 + AluSx SINE Alu 1 305 -7 350 198 76 58 chr1 13262989 13263161 -268930503 + L1M4 LINE L1 3818 3992 -2154 2285 113 3 13 chr1 13263902 13264213 -268929451 - AluSg SINE Alu -2 308 1 1213 142 6 0 chr1 13264259 13264442 -268929222 - AluSx SINE Alu -8 304 121 2237 115 7 0 chr1 13264477 13264781 -268928883 - AluSg SINE Alu -4 306 1 880 149 0 15 chr1 13264785 13264919 -268928745 - AluSx SINE Alu -181 132 1 1507 148 13 4 chr1 13264930 13265166 -268928498 - AluSg/x SINE Alu -9 303 66 295 203 0 0 chr1 13265166 13265230 -268928434 - AluSc SINE Alu -76 223 160 422 212 258 23 chr1 13265232 13265364 -268928300 + AluJb SINE Alu 8 170 -142 2037 140 20 0 chr1 13265459 13265752 -268927912 + AluSx SINE Alu 1 299 -13 1473 197 14 10 chr1 13265841 13266130 -268927534 - AluSx SINE Alu -18 294 5 647 239 49 0 chr1 13266195 13266337 -268927327 - AluJo SINE Alu -162 150 2 1396 220 0 35 chr1 13266418 13266732 -268926932 - AluJb SINE Alu -9 303 1 1996 139 14 3 chr1 13266743 13267038 -268926626 - AluSg SINE Alu -12 298 1 1332 140 8 47 chr1 13270313 13270548 -268923116 - AluSg/x SINE Alu -2 310 85 777 76 0 3 chr1 13270548 13270713 -268922951 - AluY SINE Alu -62 249 35 918 131 0 7 chr1 13270713 13270850 -268922814 - AluSq/x SINE Alu -177 136 1 263 295 19 0 chr1 13271789 13271894 -268921770 + L1M3f LINE L1 543 649 -4679 639 234 0 0 chr1 13271895 13272002 -268921662 - FLAM_C SINE Alu -34 109 3 11104 38 6 56 chr1 13272016 13273419 -268920245 - SVA Other Other 0 1386 53 243 0 0 0 chr1 13273419 13273446 -268920218 + (GGGAGA)n Simple_repeat Simple_repeat 3 29 0 3655 171 15 59 chr1 13273467 13273516 -268920148 - L1MA4 LINE L1 -6 6294 6244 198 0 0 0 chr1 13273516 13273538 -268920126 + (TTTTC)n Simple_repeat Simple_repeat 2 23 0 2077 131 0 0 chr1 13273540 13273823 -268919841 - AluSx SINE Alu -29 283 1 3655 171 15 59 chr1 13273823 13274071 -268919593 - L1MA4 LINE L1 -57 6243 5986 2434 87 3 10 chr1 13274071 13274380 -268919284 - AluY SINE Alu 0 311 5 3655 171 15 59 chr1 13274380 13274711 -268918953 - L1MA4 LINE L1 -314 5986 5706 2184 134 3 3 chr1 13274711 13275024 -268918640 + AluSq SINE Alu 1 313 0 3655 171 15 59 chr1 13275024 13275240 -268918424 - L1MA4 LINE L1 -594 5706 5482 812 203 0 0 chr1 13275247 13275380 -268918284 - FLAM_C SINE Alu 0 133 1 1654 202 7 3 chr1 13275576 13275883 -268917781 - AluJo SINE Alu -4 308 1 1031 121 0 0 chr1 13276099 13276231 -268917433 + AluSq/x SINE Alu 1 132 -180 2259 115 3 0 chr1 13276231 13276535 -268917129 + AluSg SINE Alu 1 305 -5 2210 116 10 0 chr1 13276873 13277183 -268916481 - AluSp SINE Alu 0 313 1 2228 120 0 19 chr1 13277744 13278095 -268915569 + AluSq SINE Alu 1 313 0 2034 137 3 3 chr1 13278150 13278443 -268915221 + AluSc SINE Alu 1 293 -16 482 105 0 20 chr1 13278762 13279030 -268914634 - AluSc SINE Alu -2 307 2 2373 80 7 3 chr1 13279030 13279331 -268914333 - AluSg SINE Alu -8 302 1 2325 95 3 0 chr1 13279589 13279883 -268913781 - AluSg SINE Alu -14 296 2 2115 112 0 11 chr1 13279894 13280215 -268913449 - AluSx SINE Alu 0 318 1 289 301 61 89 chr1 13280431 13280677 -268912987 + L2 LINE L2 1552 1790 -1524 1985 146 27 0 chr1 13280680 13280974 -268912690 + AluJb SINE Alu 1 302 -10 1691 138 43 0 chr1 13281253 13281506 -268912158 + AluSq SINE Alu 1 264 -49 762 93 0 0 chr1 13284616 13284724 -268908940 + (GGGA)n Simple_repeat Simple_repeat 1 108 0 187 345 43 9 chr1 13285349 13285465 -268908199 - MIR SINE MIR -80 182 63 1025 271 61 17 chr1 13287388 13287750 -268905914 - Tigger6 DNA MER2_type -12 1585 1208 283 339 199 0 chr1 13289106 13289277 -268904387 - MIR SINE MIR 0 262 58 387 138 0 0 chr1 13289528 13289586 -268904078 + AluSc SINE Alu 232 289 -10 239 254 17 0 chr1 13289591 13289650 -268904014 - MER94 DNA DNA -62 72 13 1954 53 0 0 chr1 13289732 13289976 -268903688 - L1PA4 LINE L1 0 6155 5912 40766 48 1 21 chr1 13289983 13292562 -268901102 - L1PA4 LINE L1 -1097 5049 2549 336 171 0 40 chr1 13292562 13292638 -268901026 + LTR30 LTR ERV1 552 624 -98 40766 48 1 21 chr1 13292638 13295125 -268898539 - L1PA4 LINE L1 -3597 2549 13 1909 122 30 3 chr1 13295659 13295954 -268897710 - AluSx SINE Alu -8 304 2 261 229 4 74 chr1 13296316 13296389 -268897275 + LTR45 LTR ERV1 327 404 -88 1990 121 0 66 chr1 13296389 13296568 -268897096 - AluSg SINE Alu 0 310 162 9943 48 58 14 chr1 13296568 13297911 -268895753 - SVA Other Other 0 1386 1 1990 121 0 66 chr1 13297911 13298063 -268895601 - AluSg SINE Alu -148 162 1 261 229 4 74 chr1 13298063 13298081 -268895583 + LTR45 LTR ERV1 404 412 -80 1778 175 0 0 chr1 13298081 13298373 -268895291 - AluSg SINE Alu -18 292 1 261 229 4 74 chr1 13298373 13298387 -268895277 + LTR45 LTR ERV1 412 425 -67 25 31 0 0 chr1 13299356 13299388 -268894276 + AT_rich Low_complexity Low_complexity 1 32 0 1463 170 88 137 chr1 13299426 13299972 -268893692 - LTR44 LTR ERV1 0 519 1 764 197 82 19 chr1 13300120 13300328 -268893336 - MER65A LTR ERV1 -14 431 211 3010 198 45 2 chr1 13300466 13301042 -268892622 - LTR26 LTR ERV1 -2 601 1 1617 172 7 0 chr1 13301414 13301704 -268891960 - AluSx SINE Alu -20 292 1 1275 190 0 117 chr1 13302280 13302418 -268891246 + AluJb SINE Alu 5 85 -217 1698 160 0 4 chr1 13302418 13302699 -268890965 - AluSx SINE Alu -32 280 1 1275 190 0 117 chr1 13302699 13302886 -268890778 + AluJb SINE Alu 85 292 -10 809 183 0 0 chr1 13302966 13303103 -268890561 + AluSg/x SINE Alu 138 274 -36 1567 166 4 0 chr1 13303573 13303832 -268889832 - AluSx SINE Alu -52 260 1 800 141 0 63 chr1 13303962 13304104 -268889560 + AluJo SINE Alu 14 146 -166 184 227 68 0 chr1 13305742 13305786 -268887878 - L2 LINE L2 -5 3308 3262 1448 168 67 18 chr1 13306060 13306345 -268887319 + AluSg SINE Alu 1 299 -11 1646 166 0 17 chr1 13307430 13307786 -268885878 - AluSx SINE Alu 0 312 1 1364 156 0 5 chr1 13308097 13308315 -268885349 - AluSq SINE Alu -96 217 1 2771 192 29 5 chr1 13308315 13308867 -268884797 - L1MA4 LINE L1 -50 6250 5686 759 126 0 0 chr1 13308867 13308970 -268884694 + AluSq/x SINE Alu 1 103 -210 946 222 0 9 chr1 13308970 13309191 -268884473 - L1MA4 LINE L1 -609 5691 5473 1954 143 3 9 chr1 13309379 13309694 -268883970 - AluSp SINE Alu 0 313 1 1998 124 3 0 chr1 13310237 13310591 -268883073 + AluSq SINE Alu 1 355 0 1853 148 0 3 chr1 13310646 13310961 -268882703 + AluSc SINE Alu 1 314 0 1766 142 3 11 chr1 13311313 13311632 -268882032 - AluSc SINE Alu 0 317 1 293 157 0 0 chr1 13311633 13311684 -268881980 - Alu SINE Alu -1 299 249 969 191 164 17 chr1 13311772 13312065 -268881599 - LTR44 LTR ERV1 -183 336 1 513 239 8 8 chr1 13312285 13312415 -268881249 - MER65A LTR ERV1 -105 340 211 2896 200 60 2 chr1 13312548 13313118 -268880546 - LTR26 LTR ERV1 0 603 1 1685 142 17 3 chr1 13313488 13313776 -268879888 - AluSx SINE Alu -16 296 5 23 0 0 0 chr1 13314236 13314259 -268879405 + AT_rich Low_complexity Low_complexity 1 23 0 1269 199 112 11 chr1 13314360 13314481 -268879183 + AluJb SINE Alu 5 112 -190 1640 162 0 37 chr1 13314481 13314778 -268878886 - AluSx SINE Alu -20 292 7 1269 199 112 11 chr1 13314778 13314923 -268878741 + AluJb SINE Alu 112 298 -4 782 183 0 0 chr1 13314998 13315129 -268878535 + AluSg/x SINE Alu 144 274 -36 1553 177 0 0 chr1 13315590 13315850 -268877814 - AluSx SINE Alu -52 260 1 1294 199 7 31 chr1 13315967 13316254 -268877410 + AluJb SINE Alu 1 280 -32 504 194 31 6 chr1 13316254 13316414 -268877250 + GA-rich Low_complexity Low_complexity 2 165 0 1603 139 71 0 chr1 13317412 13317692 -268875972 + AluSx SINE Alu 1 300 -12 737 180 22 7 chr1 13318753 13318892 -268874772 + FLAM_C SINE Alu 2 142 -1 1800 153 0 3 chr1 13318905 13319199 -268874465 - AluSx SINE Alu -19 293 1 1865 161 0 0 chr1 13319685 13319989 -268873675 - AluSx SINE Alu -8 304 1 1620 162 7 33 chr1 13321249 13321551 -268872113 - AluSp SINE Alu -19 294 1 1345 192 48 7 chr1 13321551 13321841 -268871823 - AluJo SINE Alu -9 303 1 379 248 78 16 chr1 13322582 13322711 -268870953 + MIR SINE MIR 117 253 -9 1887 141 3 3 chr1 13323046 13323345 -268870319 + AluSp SINE Alu 1 299 -14 1656 117 43 4 chr1 13323361 13323618 -268870046 + AluSg SINE Alu 1 267 -43 1917 120 0 3 chr1 13323739 13324022 -268869642 + AluSg SINE Alu 1 282 -28 1625 176 0 28 chr1 13324191 13324514 -268869150 - AluJb SINE Alu 0 315 1 1609 176 0 50 chr1 13324519 13324838 -268868826 - AluSx SINE Alu -9 303 1 2487 218 104 19 chr1 13324839 13325505 -268868159 - L1MC1 LINE L1 -11 6322 5601 196 293 67 40 chr1 13325557 13325632 -268868032 + L2 LINE L2 3169 3245 -27 833 194 7 0 chr1 13325805 13325944 -268867720 + AluSq/x SINE Alu 3 142 -171 22034 77 1 0 chr1 13325949 13328781 -268864883 + L1PA7 LINE L1 8 2840 -3306 1560 58 0 0 chr1 13328777 13328967 -268864697 - L1PA4 LINE L1 -172 5983 5794 * 1070 70 0 0 chr1 13328967 13329101 -268864563 + L1PA4 LINE L1 6013 6155 0 * 18563 84 17 14 chr1 13329099 13332404 -268861260 + L1PA7 LINE L1 2827 6136 -18 1064 40 0 0 chr1 13332280 13332587 -268861077 + L1PA7 LINE L1 6013 6319 0 1353 50 0 11 chr1 13332405 13332755 -268860909 + (GAAA)n Simple_repeat Simple_repeat 1 528 0 327 130 0 0 chr1 13332767 13332821 -268860843 + (GGGGA)n Simple_repeat Simple_repeat 3 56 0 1334 271 44 34 chr1 13332943 13333140 -268860524 + MER41E LTR ERV1 13 206 -306 874 144 7 0 chr1 13333140 13333457 -268860207 + AluSp SINE Alu 1 318 0 1334 271 44 34 chr1 13333457 13333730 -268859934 + MER41E LTR ERV1 206 490 -22 2646 240 13 63 chr1 13333884 13334819 -268858845 - L1 LINE L1 -1297 6268 5381 919 251 11 0 chr1 13334883 13335221 -268858443 - L1 LINE L1 -3780 3785 3441 5692 230 29 72 chr1 13335224 13336859 -268856805 - MER52A LTR ERV1 -6 1749 51 1219 254 0 0 chr1 13337559 13337846 -268855818 + AluSx SINE Alu 19 305 -7 375 175 88 14 chr1 13338230 13338321 -268855343 + AluJ/FLAM SINE Alu 1 62 -240 21 71 0 0 chr1 13338329 13338371 -268855293 + AT_rich Low_complexity Low_complexity 1 42 0 592 184 0 6 chr1 13341748 13341987 -268851677 + AluSx SINE Alu 3 293 -17 723 249 0 0 chr1 13342001 13342174 -268851490 + AluSx SINE Alu 122 294 -16 1784 154 3 0 chr1 13342250 13342542 -268851122 + AluSq SINE Alu 1 293 -20 21 0 0 0 chr1 13342860 13342881 -268850783 + AT_rich Low_complexity Low_complexity 1 21 0 1646 156 4 4 chr1 13343934 13344210 -268849454 - AluSx SINE Alu -26 286 11 792 253 0 15 chr1 13344470 13344672 -268848992 + AluJb SINE Alu 15 213 -99 473 295 90 35 chr1 13344954 13345015 -268848649 + L1M4 LINE L1 3729 3785 -2361 2134 119 3 0 chr1 13345015 13345326 -268848338 + AluSp SINE Alu 1 312 -1 473 295 90 35 chr1 13345326 13345587 -268848077 + L1M4 LINE L1 3785 4087 -2059 559 284 72 68 chr1 13345630 13345695 -268847969 + MIR SINE MIR 12 75 -187 1636 66 5 0 chr1 13345695 13345906 -268847758 + AluY SINE Alu 82 293 -18 559 284 72 68 chr1 13345906 13346090 -268847574 + MIR SINE MIR 75 262 0 1589 141 6 73 chr1 13346202 13346515 -268847149 + AluSx SINE Alu 1 292 -20 242 237 17 0 chr1 13346519 13346578 -268847086 - MER94 DNA DNA -62 72 13 1811 113 33 4 chr1 13347010 13347284 -268846380 - AluSx SINE Alu -28 284 3 321 242 12 127 chr1 13347631 13347710 -268845954 + LTR45B LTR ERV1 328 414 -75 2037 124 7 0 chr1 13347710 13348017 -268845647 - AluSg SINE Alu -1 309 1 321 242 12 127 chr1 13348017 13348034 -268845630 + LTR45B LTR ERV1 414 431 -58 1763 163 3 0 chr1 13348034 13348329 -268845335 - AluSg SINE Alu -14 296 1 321 242 12 127 chr1 13348329 13348396 -268845268 + LTR45B LTR ERV1 431 473 -16 1705 143 4 0 chr1 13349055 13349321 -268844343 - AluSp SINE Alu -44 269 3 445 262 91 11 chr1 13349651 13349838 -268843826 - MER65A LTR ERV1 -33 412 211 2950 186 58 7 chr1 13349973 13350547 -268843117 - LTR26 LTR ERV1 0 603 1 1598 170 14 0 chr1 13350915 13351203 -268842461 - AluSx SINE Alu -20 292 1 5563 19 5 1 chr1 13353194 13353973 -268839691 - L1PA3 LINE L1 -250 5905 5124 399 179 26 0 chr1 13353973 13354051 -268839613 - LTR44 LTR ERV1 -115 404 325 1112 197 153 10 chr1 13354107 13354401 -268839263 - LTR44 LTR ERV1 -183 336 1 673 193 84 38 chr1 13354547 13354760 -268838904 - MER65A LTR ERV1 -12 433 211 2958 201 45 2 chr1 13354895 13355473 -268838191 - LTR26 LTR ERV1 0 603 1 1597 173 13 0 chr1 13355842 13356142 -268837522 - AluSx SINE Alu -8 304 1 1269 181 3 101 chr1 13356717 13356834 -268836830 + AluJb SINE Alu 9 136 -176 1549 171 0 21 chr1 13356834 13357120 -268836544 - AluSx SINE Alu -20 292 13 1269 181 3 101 chr1 13357120 13357338 -268836326 + AluJb SINE Alu 136 311 -1 800 194 0 0 chr1 13357425 13357569 -268836095 + AluSg/x SINE Alu 138 281 -29 1607 179 24 0 chr1 13358003 13358300 -268835364 - AluSx SINE Alu -8 304 1 805 147 0 63 chr1 13358425 13358568 -268835096 + AluJo SINE Alu 9 142 -170 1581 178 59 0 chr1 13360527 13360814 -268832850 + AluSg SINE Alu 6 309 -1 2343 19 0 0 chr1 13361775 13362044 -268831620 - AluYa5 SINE Alu 0 311 43 33 0 0 0 chr1 13362198 13362231 -268831433 + AT_rich Low_complexity Low_complexity 1 33 0 1539 195 3 3 chr1 13362231 13362539 -268831125 - AluSx SINE Alu -4 308 1 1404 141 0 0 chr1 13362854 13363067 -268830597 - AluSq SINE Alu -100 213 1 2777 188 29 7 chr1 13363067 13363621 -268830043 - L1MA4 LINE L1 -50 6250 5685 699 157 0 0 chr1 13363621 13363723 -268829941 + AluSq/x SINE Alu 2 103 -210 980 217 0 9 chr1 13363723 13363944 -268829720 - L1MA4 LINE L1 -609 5691 5473 2101 120 3 0 chr1 13364150 13364450 -268829214 - AluSp SINE Alu -12 301 1 1849 136 4 0 chr1 13365007 13365349 -268828315 + AluSq SINE Alu 13 355 0 1893 141 0 3 chr1 13365404 13365719 -268827945 + AluSc SINE Alu 1 314 0 1795 158 7 10 chr1 13366075 13366385 -268827279 - AluSc SINE Alu 0 309 1 342 115 0 0 chr1 13366385 13366437 -268827227 - Alu SINE Alu 0 301 250 1003 191 160 17 chr1 13366525 13366819 -268826845 - LTR44 LTR ERV1 -183 336 1 513 239 8 8 chr1 13367039 13367169 -268826495 - MER65A LTR ERV1 -105 340 211 2781 211 60 2 chr1 13367302 13367872 -268825792 - LTR26 LTR ERV1 0 603 1 1587 162 10 24 chr1 13368241 13368537 -268825127 - AluSx SINE Alu -16 296 5 1330 194 3 52 chr1 13369114 13369235 -268824429 + AluJb SINE Alu 5 130 -182 1714 153 0 39 chr1 13369235 13369543 -268824121 - AluSx SINE Alu -16 296 1 1330 194 3 52 chr1 13369543 13369731 -268823933 + AluJb SINE Alu 130 299 -13 733 208 0 26 chr1 13369806 13369960 -268823704 + AluSc SINE Alu 144 293 -16 730 197 0 15 chr1 13370399 13370531 -268823133 - AluSc SINE Alu -52 257 128 1253 196 14 32 chr1 13370540 13370825 -268822839 + AluJb SINE Alu 1 280 -32 468 199 32 6 chr1 13370825 13370981 -268822683 + GA-rich Low_complexity Low_complexity 2 161 0 1649 132 71 0 chr1 13371978 13372259 -268821405 + AluSx SINE Alu 1 301 -11 693 188 22 7 chr1 13373320 13373458 -268820206 + FLAM_C SINE Alu 2 141 -2 1820 154 0 3 chr1 13373472 13373765 -268819899 - AluSx SINE Alu -20 292 1 1870 155 7 0 chr1 13374250 13374554 -268819110 - AluSx SINE Alu -6 306 1 1700 149 7 33 chr1 13375814 13376116 -268817548 - AluSq SINE Alu -19 294 1 1443 184 44 7 chr1 13376116 13376409 -268817255 - AluJo SINE Alu -7 305 1 382 256 78 16 chr1 13377150 13377279 -268816385 + MIR SINE MIR 117 253 -9 2040 120 0 3 chr1 13377614 13377913 -268815751 + AluSp SINE Alu 1 298 -15 1588 128 43 4 chr1 13377929 13378186 -268815478 + AluSg SINE Alu 1 267 -43 1869 127 0 3 chr1 13378308 13378591 -268815073 + AluSg SINE Alu 1 282 -28 1533 153 55 29 chr1 13378760 13379058 -268814606 - AluJb SINE Alu 0 305 1 1768 151 3 50 chr1 13379063 13379381 -268814283 - AluSx SINE Alu -9 303 1 1575 226 14 3 chr1 13379382 13379753 -268813911 - L1MC1 LINE L1 -11 6322 5948 918 204 189 15 chr1 13379770 13380034 -268813630 - L1MC1 LINE L1 -423 5910 5601 190 320 67 40 chr1 13380086 13380161 -268813503 + L2 LINE L2 3169 3245 -27 820 191 7 0 chr1 13380336 13380472 -268813192 + AluSx SINE Alu 6 142 -171 22343 73 0 2 chr1 13380477 13383315 -268810349 + L1PA4 LINE L1 8 2840 -3306 1552 58 0 0 chr1 13383311 13383501 -268810163 - L1PA4 LINE L1 -172 5983 5794 * 821 67 0 0 chr1 13383492 13383596 -268810068 + L1PA4 LINE L1 6013 6116 -39 * 1070 70 0 0 chr1 13383501 13383635 -268810029 + L1PA4 LINE L1 6013 6155 0 * 20730 44 1 24 chr1 13383633 13386970 -268806694 + L1PA4 LINE L1 2827 6150 -5 997 180 0 0 chr1 13386971 13387149 -268806515 + AluSx SINE Alu 135 312 0 21 36 0 0 chr1 13388228 13388256 -268805408 + AT_rich Low_complexity Low_complexity 1 28 0 545 164 0 39 chr1 13390243 13390373 -268803291 + AluSp/q SINE Alu 188 313 0 1450 201 7 3 chr1 13390599 13390897 -268802767 - AluJb SINE Alu 0 312 14 1219 246 63 41 chr1 13390905 13391041 -268802623 - Tigger6 DNA MER2_type -63 1534 1402 1597 163 14 0 chr1 13391041 13391335 -268802329 + AluSx SINE Alu 3 300 -12 1219 246 63 41 chr1 13391335 13391609 -268802055 - Tigger6 DNA MER2_type -195 1402 1115 221 322 188 47 chr1 13393223 13393521 -268800143 - L2 LINE L2 -652 2662 2323 1050 186 24 20 chr1 13393913 13394160 -268799504 + L1MA7 LINE L1 6026 6273 -18 18829 99 3 15 chr1 13394458 13398002 -268795662 + L1PA7 LINE L1 2548 6136 -18 1187 107 4 16 chr1 13398002 13398236 -268795428 + (GAAA)n Simple_repeat Simple_repeat 4 228 0 294 164 0 0 chr1 13398239 13398294 -268795370 + GA-rich Low_complexity Low_complexity 1 55 0 1332 264 43 45 chr1 13398406 13398603 -268795061 + MER41E LTR ERV1 13 209 -303 1973 110 21 0 chr1 13398603 13398921 -268794743 + AluSp SINE Alu 1 324 0 1332 264 43 45 chr1 13398921 13399184 -268794480 + MER41E LTR ERV1 209 474 -38 3071 226 10 48 chr1 13399354 13400277 -268793387 - L1 LINE L1 -1297 6268 5381 939 252 18 3 chr1 13400341 13400681 -268792983 - L1 LINE L1 -3780 3785 3441 5649 230 33 68 chr1 13400684 13402319 -268791345 - MER52A LTR ERV1 -6 1749 51 1270 246 0 0 chr1 13403023 13403311 -268790353 + AluSx SINE Alu 18 305 -7 653 188 0 8 chr1 13403693 13403810 -268789854 + FLAM_C SINE Alu 1 116 -17 21 71 0 0 chr1 13403818 13403860 -268789804 + AT_rich Low_complexity Low_complexity 1 42 0 581 207 4 2 chr1 13407136 13407373 -268786291 + AluSx SINE Alu 3 295 -17 709 244 0 0 chr1 13407392 13407560 -268786104 + AluSx SINE Alu 129 296 -16 1792 147 3 0 chr1 13407633 13407925 -268785739 + AluSq SINE Alu 1 293 -20 26 0 0 0 chr1 13408234 13408260 -268785404 + AT_rich Low_complexity Low_complexity 1 26 0 1516 181 3 3 chr1 13409310 13409592 -268784072 - AluSx SINE Alu -26 286 5 1656 174 17 0 chr1 13410172 13410633 -268783031 + AluY SINE Alu 3 468 0 793 254 0 15 chr1 13410634 13410835 -268782829 + AluJb SINE Alu 16 213 -99 240 35 0 0 chr1 13411930 13411959 -268781705 + (TG)n Simple_repeat Simple_repeat 1 29 0 984 201 32 0 chr1 13412825 13413044 -268780620 + AluSg/x SINE Alu 85 310 -2 1573 172 45 0 chr1 13413573 13413870 -268779794 + AluSc SINE Alu 1 309 0 3392 207 35 53 chr1 13414025 13415011 -268778653 + LTR5 LTR ERVK 1 969 0 27152 159 28 32 chr1 13415013 13419846 -268773818 + HERVK LTR ERVK 3 4815 -2428 250 310 53 41 chr1 13420310 13420555 -268773109 - PABL_B-int LTR ERV1 -4280 2842 2595 239 333 54 16 chr1 13421051 13421180 -268772484 - MIR SINE MIR -12 250 117 317 306 105 39 chr1 13425823 13426052 -268767612 + L1M4 LINE L1 2808 3051 -3095 954 226 52 4 chr1 13427522 13427752 -268765912 + AluJb SINE Alu 44 284 -28 180 353 35 0 chr1 13428363 13428479 -268765185 - MIR SINE MIR -80 182 63 249 278 42 0 chr1 13430209 13430281 -268763383 - L2 LINE L2 -10 3262 3188 1033 243 72 15 chr1 13430347 13430681 -268762983 - Tigger6 DNA MER2_type -37 1560 1208 7790 165 21 68 chr1 13431826 13433187 -268760477 + L1MA4 LINE L1 3643 5066 -1234 2210 127 3 7 chr1 13433187 13433495 -268760169 + AluSc SINE Alu 1 307 -2 7790 165 21 68 chr1 13433495 13434715 -268758949 + L1MA4 LINE L1 5066 6082 -218 2500 69 6 28 chr1 13434715 13435033 -268758631 - AluY SINE Alu 0 311 1 7790 165 21 68 chr1 13435033 13435241 -268758423 + L1MA4 LINE L1 6082 6298 -2 808 200 16 32 chr1 13435286 13435476 -268758188 + MER5A DNA MER1_type 3 189 0 702 216 35 6 chr1 13435876 13436047 -268757617 + MLT1D LTR MaLR 21 196 -309 506 193 180 13 chr1 13436111 13436261 -268757403 + MLT1D LTR MaLR 304 478 -27 447 148 37 0 chr1 13436292 13436373 -268757291 + MLT1D LTR MaLR 422 505 0 676 94 219 16 chr1 13436619 13436747 -268756917 - MER30 DNA MER1_type 0 230 77 183 42 0 0 chr1 13436747 13436771 -268756893 + (TTG)n Simple_repeat Simple_repeat 1 24 0 1456 154 5 0 chr1 13436772 13436993 -268756671 - AluSx SINE Alu -32 280 59 710 86 0 0 chr1 13437093 13437186 -268756478 - AluS SINE Alu -218 94 2 427 329 81 9 chr1 13437188 13437398 -268756266 + L1M4 LINE L1 3727 3951 -2195 545 303 100 26 chr1 13437537 13437768 -268755896 + MIR SINE MIR 15 262 0 240 182 0 148 chr1 13437849 13437880 -268755784 - MER94 DNA DNA -47 87 53 2002 139 0 16 chr1 13437880 13438190 -268755474 + AluSx SINE Alu 1 305 -7 240 182 0 148 chr1 13438190 13438246 -268755418 - MER94 DNA DNA -81 53 13 204 235 0 0 chr1 13438447 13438498 -268755166 + (TA)n Simple_repeat Simple_repeat 1 51 0 267 332 57 42 chr1 13438692 13438885 -268754779 + MER110-int LTR ERV1 2243 2438 -2209 1981 112 42 0 chr1 13438897 13439182 -268754482 - AluSx SINE Alu -14 298 2 2223 123 3 0 chr1 13439624 13439924 -268753740 - AluSp SINE Alu -12 301 1 1725 157 94 135 chr1 13440028 13440569 -268753095 - LTR44 LTR ERV1 0 519 1 571 185 81 77 chr1 13440715 13440937 -268752727 - MER65A LTR ERV1 -12 433 211 3155 187 45 2 chr1 13441072 13441650 -268752014 - LTR26 LTR ERV1 0 603 1 346 64 0 0 chr1 13441850 13441897 -268751767 - AluSg SINE Alu -7 293 247 1481 102 0 0 chr1 13441897 13442084 -268751580 - AluSg SINE Alu -123 187 1 1910 135 28 3 chr1 13442267 13442433 -268751231 - AluSx SINE Alu -16 296 119 189 0 0 0 chr1 13442433 13442454 -268751210 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 1910 135 28 3 chr1 13442454 13442576 -268751088 - AluSx SINE Alu -193 119 1 954 108 8 0 chr1 13442577 13442707 -268750957 - AluSq/x SINE Alu -177 136 6 1635 161 0 58 chr1 13443273 13443394 -268750270 + AluJb SINE Alu 5 132 -180 2086 131 0 3 chr1 13443394 13443691 -268749973 - AluSx SINE Alu -16 296 1 1635 161 0 58 chr1 13443691 13443860 -268749804 + AluJb SINE Alu 132 278 -34 423 160 9 114 chr1 13444092 13444208 -268749456 - MER65-int LTR ERV1 -4048 823 728 183 246 0 77 chr1 13444208 13444273 -268749391 - L3b LINE CR1 -105 1478 1419 348 0 0 55 chr1 13444559 13444614 -268749050 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 1278 160 0 0 chr1 13444663 13444850 -268748814 - AluSx SINE Alu -125 187 1 802 197 0 0 chr1 13445313 13445450 -268748214 + AluSg/x SINE Alu 138 274 -36 1968 168 7 0 chr1 13445887 13446197 -268747467 - AluSx SINE Alu 0 312 1 1792 133 0 70 chr1 13446558 13446893 -268746771 - AluSg SINE Alu 0 314 1 1918 149 0 20 chr1 13447003 13447299 -268746365 - AluSx SINE Alu -22 290 1 1447 134 0 0 chr1 13447352 13447553 -268746111 - AluSg/x SINE Alu -30 282 82 2203 114 0 13 chr1 13447617 13447916 -268745748 - AluSx SINE Alu -17 295 1 1796 148 13 33 chr1 13448034 13448337 -268745327 + AluJb SINE Alu 1 297 -15 249 211 0 0 chr1 13448337 13448394 -268745270 + GA-rich Low_complexity Low_complexity 1 57 0 832 106 0 0 chr1 13449424 13449528 -268744136 + AluSx SINE Alu 1 104 -209 718 94 0 0 chr1 13449528 13449624 -268744040 - LTR12 LTR ERV1 -4 710 615 253 271 42 25 chr1 13449626 13449744 -268743920 - LTR30 LTR ERV1 -79 643 524 639 137 5 5 chr1 13449831 13449949 -268743715 - LTR12 LTR ERV1 -480 234 3 1561 96 0 0 chr1 13449950 13450149 -268743515 + AluSx SINE Alu 94 292 -18 2358 54 30 20 chr1 13450269 13450444 -268743220 - AluY SINE Alu -12 299 118 369 0 0 0 chr1 13450444 13450485 -268743179 + (TG)n Simple_repeat Simple_repeat 2 42 0 2358 54 30 20 chr1 13450485 13450605 -268743059 - AluY SINE Alu -193 118 1 597 199 23 23 chr1 13451537 13451668 -268741996 + FLAM_C SINE Alu 1 131 -2 2166 124 17 0 chr1 13451689 13451979 -268741685 - AluSq SINE Alu -18 295 1 1707 61 0 14 chr1 13452042 13452254 -268741410 - AluY SINE Alu -102 209 1 2236 120 7 0 chr1 13452738 13453039 -268740625 - AluSx SINE Alu -9 303 1 549 148 0 0 chr1 13453863 13453944 -268739720 - AluSg/x SINE Alu -50 260 180 2297 90 0 43 chr1 13454003 13454326 -268739338 + AluSc SINE Alu 1 309 0 356 256 78 16 chr1 13454582 13454711 -268738953 + MIR SINE MIR 117 253 -9 2397 82 3 0 chr1 13454753 13455056 -268738608 - AluSc SINE Alu -5 304 1 246 105 0 0 chr1 13455478 13455516 -268738148 + Alu SINE Alu 255 292 -7 1455 93 69 5 chr1 13455518 13455734 -268737930 + AluSx SINE Alu 1 230 -82 2356 95 0 10 chr1 13455893 13456197 -268737467 - AluY SINE Alu -10 301 1 1090 173 50 117 chr1 13456199 13456454 -268737210 + MER82 DNA MER2_type 22 250 -403 839 154 23 0 chr1 13456454 13456584 -268737080 - FLAM_C SINE Alu 0 133 1 1090 173 50 117 chr1 13456584 13456669 -268736995 + MER82 DNA MER2_type 250 339 -314 2216 110 7 10 chr1 13456684 13456992 -268736672 - AluSg1 SINE Alu -1 308 2 342 316 45 65 chr1 13457296 13457369 -268736295 - L2 LINE L2 0 3272 3199 1943 158 0 3 chr1 13457369 13457666 -268735998 + AluSx SINE Alu 1 296 -16 2288 113 0 3 chr1 13457666 13457974 -268735690 + AluSx SINE Alu 1 308 -4 342 316 45 65 chr1 13457974 13458054 -268735610 - L2 LINE L2 -71 3201 3121 379 145 0 0 chr1 13458078 13458140 -268735524 + AluSq/x SINE Alu 49 110 -193 413 169 12 0 chr1 13458156 13458239 -268735425 + AluS SINE Alu 228 311 0 2401 100 3 0 chr1 13458298 13458608 -268735056 - AluSp SINE Alu -2 311 1 2218 106 7 3 chr1 13458620 13458921 -268734743 - AluSx SINE Alu -10 302 1 685 219 19 32 chr1 13458964 13459119 -268734545 + MIR SINE MIR 89 241 -21 1034 187 0 0 chr1 13459163 13459329 -268734335 - AluJb SINE Alu -17 295 130 1936 81 0 4 chr1 13460105 13460340 -268733324 - AluY SINE Alu -77 234 1 2177 124 0 3 chr1 13460341 13460647 -268733017 - AluSq SINE Alu -8 305 1 2466 77 0 0 chr1 13460658 13460958 -268732706 - AluY SINE Alu -11 300 1 333 270 97 71 chr1 13461100 13461150 -268732514 + MIR SINE MIR 21 68 -194 2203 122 3 0 chr1 13461150 13461446 -268732218 + AluSx SINE Alu 1 297 -15 333 270 97 71 chr1 13461446 13461591 -268732073 + MIR SINE MIR 68 221 -41 1531 94 30 43 chr1 13461775 13461928 -268731736 - MER30 DNA MER1_type 0 230 80 1421 113 213 17 chr1 13461928 13462189 -268731475 - AluSg1 SINE Alu 0 309 1 1531 94 30 43 chr1 13462189 13462268 -268731396 - MER30 DNA MER1_type -150 80 1 552 274 30 20 chr1 13462342 13462543 -268731121 + MLT1J LTR MaLR 7 209 -302 33 43 0 0 chr1 13462543 13462590 -268731074 + AT_rich Low_complexity Low_complexity 1 47 0 2149 103 0 0 chr1 13462597 13462870 -268730794 - AluSx SINE Alu -30 282 10 791 196 85 88 chr1 13462878 13463184 -268730480 + MLT1J LTR MaLR 207 511 0 2278 118 0 7 chr1 13463218 13463522 -268730142 - AluSx SINE Alu -10 302 1 200 354 31 15 chr1 13463523 13463653 -268730011 + MIR3 SINE MIR 71 202 -6 1375 103 5 0 chr1 13464243 13464428 -268729236 - AluSg/x SINE Alu -6 304 119 1835 159 20 7 chr1 13464459 13464754 -268728910 + AluJb SINE Alu 1 299 -13 291 180 0 16 chr1 13465358 13465419 -268728245 - MIR SINE MIR -68 140 81 969 203 44 58 chr1 13465426 13465719 -268727945 + L1ME1 LINE L1 5798 6117 -61 434 18 18 0 chr1 13465719 13465774 -268727890 + (TAGA)n Simple_repeat Simple_repeat 3 58 0 969 203 44 58 chr1 13465774 13465832 -268727832 + L1ME1 LINE L1 6117 6174 -4 2034 128 10 10 chr1 13465833 13466129 -268727535 + AluJo SINE Alu 1 296 -16 2381 98 3 3 chr1 13466129 13466434 -268727230 + AluSp SINE Alu 1 305 -8 638 219 24 18 chr1 13466608 13466902 -268726762 - MLT1E LTR MaLR -27 566 217 1843 147 7 4 chr1 13467158 13467460 -268726204 - AluJb SINE Alu 0 305 3 2120 109 0 56 chr1 13467467 13467788 -268725876 - AluSx SINE Alu -9 303 1 2150 112 3 3 chr1 13467793 13468123 -268725541 - AluSq SINE Alu 0 330 1 2480 198 74 26 chr1 13468129 13468602 -268725062 - L1MC1 LINE L1 -13 6320 5802 2412 104 0 0 chr1 13468602 13468909 -268724755 - AluSg1 SINE Alu -2 307 1 2480 198 74 26 chr1 13468909 13469122 -268724542 - L1MC1 LINE L1 -531 5802 5601 2306 108 16 0 chr1 13469140 13469447 -268724217 - AluSx SINE Alu 0 312 1 5806 90 16 7 chr1 13469613 13470649 -268723015 - Harlequin LTR ERV1 0 8399 504 1092 120 3 7 chr1 13470647 13470985 -268722679 - Harlequin LTR ERV1 -5156 1740 1363 * 208 275 62 0 chr1 13471507 13471587 -268722077 + MIR SINE MIR 59 143 -119 2222 108 10 0 chr1 13472253 13472549 -268721115 - AluSx SINE Alu -13 299 1 191 326 53 0 chr1 13473103 13473198 -268720466 + L2 LINE L2 3191 3290 -23 398 257 126 14 chr1 13473573 13473787 -268719877 + L2 LINE L2 2844 3081 -232 1389 137 12 32 chr1 13473803 13474051 -268719613 + MLT2B3 LTR ERVL 1 243 -311 2440 62 0 3 chr1 13474054 13474343 -268719321 - AluY SINE Alu -17 294 7 1475 243 136 21 chr1 13474399 13474885 -268718779 - MLT1F LTR MaLR 0 542 1 2171 71 49 0 chr1 13474936 13475203 -268718461 + AluY SINE Alu 21 300 -11 2198 121 0 3 chr1 13475214 13475519 -268718145 + AluSq SINE Alu 1 304 -9 2164 112 34 0 chr1 13475768 13476063 -268717601 - AluSx SINE Alu -7 305 1 1759 95 0 26 chr1 13476319 13476551 -268717113 + AluSg/x SINE Alu 67 292 -18 208 214 18 36 chr1 13476630 13476686 -268716978 - L2 LINE L2 -79 3234 3180 487 312 241 10 chr1 13476689 13476990 -268716674 - L2 LINE L2 0 3313 3083 1731 173 50 0 chr1 13476990 13477267 -268716397 + AluJo SINE Alu 1 291 -21 487 312 241 10 chr1 13477267 13477359 -268716305 - L2 LINE L2 -230 3083 2829 753 282 92 4 chr1 13477673 13477900 -268715764 - MIR SINE MIR 0 262 16 24 0 0 0 chr1 13478540 13478564 -268715100 + AT_rich Low_complexity Low_complexity 1 24 0 813 180 20 65 chr1 13479335 13479499 -268714165 - MER20 DNA MER1_type 0 219 64 2174 130 0 0 chr1 13479499 13479799 -268713865 + AluSq SINE Alu 3 302 -11 813 180 20 65 chr1 13479799 13479834 -268713830 - MER20 DNA MER1_type -155 64 29 2254 105 20 0 chr1 13480159 13480465 -268713199 - AluSx SINE Alu 0 312 1 632 271 52 22 chr1 13480466 13480695 -268712969 - MER115 DNA AcHobo -137 556 321 646 276 112 0 chr1 13480749 13480945 -268712719 - MER115 DNA AcHobo -474 219 2 313 300 42 110 chr1 13481235 13481498 -268712166 + MIR SINE MIR 14 258 -4 279 310 183 21 chr1 13481508 13481650 -268712014 + MIR SINE MIR 20 184 -78 460 256 54 95 chr1 13481700 13481760 -268711904 - L2 LINE L2 -1 3312 3251 2477 93 0 0 chr1 13481760 13482070 -268711594 - AluSg SINE Alu 0 310 1 460 256 54 95 chr1 13482070 13482251 -268711413 - L2 LINE L2 -62 3251 3081 2484 71 0 13 chr1 13482706 13483014 -268710650 - AluY SINE Alu -7 304 1 1280 178 53 41 chr1 13483689 13484101 -268709563 + MLT2B1 LTR ERVL 1 407 -7 444 328 48 0 chr1 13484154 13484340 -268709324 + L2 LINE L2 3106 3300 -13 1795 194 13 27 chr1 13485048 13485420 -268708244 - MLT1A2 LTR MaLR -7 367 1 381 46 6 0 chr1 13486409 13486466 -268707198 + MLT2B3 LTR ERVL 462 554 0 457 320 46 20 chr1 13486482 13486679 -268706985 + L2 LINE L2 3110 3311 -2 392 222 9 0 chr1 13486679 13486787 -268706877 + (TGGG)n Simple_repeat Simple_repeat 4 112 0 2007 91 0 0 chr1 13487664 13487907 -268705757 + AluSq SINE Alu 3 245 -68 846 147 16 0 chr1 13487907 13488036 -268705628 + AluSg/x SINE Alu 175 305 -7 235 274 177 0 chr1 13488220 13488344 -268705320 - L2 LINE L2 0 3313 3168 2316 209 153 0 chr1 13488450 13489019 -268704645 + MER67B LTR ERV1 3 658 -3 1886 169 0 0 chr1 13489451 13489735 -268703929 + AluJb SINE Alu 1 284 -28 1832 151 27 15 chr1 13489802 13490139 -268703525 - L1MB7 LINE L1 -23 6161 5821 27 0 0 0 chr1 13490144 13490171 -268703493 + AT_rich Low_complexity Low_complexity 1 27 0 1022 135 0 0 chr1 13490192 13490333 -268703331 - AluJb SINE Alu -171 141 1 1771 181 24 37 chr1 13490340 13490473 -268703191 - L1MB7 LINE L1 -364 5820 5687 2011 155 0 0 chr1 13490473 13490770 -268702894 - AluJb SINE Alu -15 297 1 1771 181 24 37 chr1 13490770 13491017 -268702647 - L1MB7 LINE L1 -497 5687 5445 1512 154 53 74 chr1 13491991 13492062 -268701602 - MER44D DNA MER2_type -1882 609 538 2476 102 0 3 chr1 13492062 13492375 -268701289 + AluSx SINE Alu 1 312 0 1512 154 53 74 chr1 13492375 13492641 -268701023 - MER44D DNA MER2_type -1953 538 9 643 36 12 0 chr1 13492836 13492920 -268700744 - AluY SINE Alu -16 295 211 338 125 36 0 chr1 13492923 13492979 -268700685 + MLT1E1 LTR MaLR 4 61 -593 259 303 0 22 chr1 13493081 13493170 -268700494 - L1MB7 LINE L1 -2387 5421 5335 390 305 134 0 chr1 13493286 13493450 -268700214 + L1ME LINE L1 5630 5815 -306 392 182 159 102 chr1 13493741 13493917 -268699747 - MIR3 SINE MIR -3 205 20 2483 87 0 6 chr1 13494511 13494822 -268698842 - AluSx SINE Alu -3 309 1 262 339 9 0 chr1 13494861 13494970 -268698694 + (CCA)n Simple_repeat Simple_repeat 2 111 0 765 227 45 0 chr1 13495444 13495620 -268698044 + MER20 DNA MER1_type 1 184 -35 1338 141 5 18 chr1 13495690 13495910 -268697754 - AluJb SINE Alu -11 301 85 288 151 0 82 chr1 13495944 13496017 -268697647 + L1MB3 LINE L1 6084 6150 -33 2385 107 0 0 chr1 13496029 13496339 -268697325 - AluSx SINE Alu -2 310 1 1832 175 21 13 chr1 13496341 13496724 -268696940 - L1MB3 LINE L1 -42 6141 5756 2237 120 0 3 chr1 13496782 13497082 -268696582 + AluSx SINE Alu 1 299 -13 1502 193 179 24 chr1 13497833 13498146 -268695518 + MLT1D LTR MaLR 22 418 -87 2217 126 0 0 chr1 13498146 13498439 -268695225 + AluSg SINE Alu 1 293 -17 1502 193 179 24 chr1 13498439 13498544 -268695120 + MLT1D LTR MaLR 418 505 0 238 313 0 0 chr1 13498547 13498614 -268695050 - MIR SINE MIR -112 96 30 574 330 51 9 chr1 13498793 13499008 -268694656 - MIR SINE MIR -34 228 5 392 321 36 7 chr1 13499055 13499195 -268694469 + MIR3 SINE MIR 30 173 -35 766 303 88 14 chr1 13500009 13500306 -268693358 - L3 LINE CR1 -57 1520 1202 1785 146 7 28 chr1 13500547 13500835 -268692829 - AluJo SINE Alu -30 282 1 924 330 29 10 chr1 13501002 13501586 -268692078 - L2 LINE L2 0 3313 2712 230 244 98 12 chr1 13501863 13501945 -268691719 + MIR SINE MIR 47 135 -127 745 203 33 47 chr1 13501972 13502060 -268691604 + Charlie5 DNA MER1_type 2365 2453 -132 2093 99 54 7 chr1 13502060 13502354 -268691310 + AluSp SINE Alu 1 308 -5 745 203 33 47 chr1 13502354 13502477 -268691187 + Charlie5 DNA MER1_type 2453 2573 -12 228 35 0 0 chr1 13502597 13502626 -268691038 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2318 109 0 3 chr1 13502716 13503019 -268690645 + AluSg SINE Alu 1 302 -8 830 200 46 19 chr1 13503053 13503302 -268690362 - MLT1E LTR MaLR -49 544 258 235 338 76 55 chr1 13504212 13504357 -268689307 + L2 LINE L2 3105 3252 -20 2093 106 29 0 chr1 13504366 13504679 -268688985 - AluSx SINE Alu 0 321 1 233 75 25 0 chr1 13504875 13504915 -268688749 + (TC)n Simple_repeat Simple_repeat 2 42 0 2464 78 3 10 chr1 13505109 13505416 -268688248 + AluSp SINE Alu 1 305 -8 2567 56 3 3 chr1 13505982 13506285 -268687379 + AluY SINE Alu 1 303 -8 2424 43 0 46 chr1 13506566 13506871 -268686793 + AluY SINE Alu 1 291 -20 778 138 15 0 chr1 13507220 13507350 -268686314 - FLAM_C SINE Alu -1 132 1 464 183 39 0 chr1 13507457 13507561 -268686103 - L1MB7 LINE L1 -303 5881 5774 1858 122 34 8 chr1 13507750 13508012 -268685652 + AluSg SINE Alu 11 279 -31 427 255 159 36 chr1 13508821 13509250 -268684414 - L2 LINE L2 -97 3216 2737 2494 87 0 3 chr1 13509699 13510010 -268683654 - AluSx SINE Alu -2 310 1 519 299 153 26 chr1 13510679 13510801 -268682863 + L1ME4a LINE L1 5379 5484 -637 2383 108 0 0 chr1 13510801 13511108 -268682556 + AluSx SINE Alu 1 307 -5 519 299 153 26 chr1 13511108 13511206 -268682458 + L1ME4a LINE L1 5484 5568 -553 2187 117 0 7 chr1 13511206 13511504 -268682160 + AluSx SINE Alu 3 298 -14 519 299 153 26 chr1 13511504 13511937 -268681727 + L1ME4a LINE L1 5568 6116 -5 205 397 32 0 chr1 13512967 13513093 -268680571 - MIR3 SINE MIR -6 202 73 462 229 22 89 chr1 13513122 13513301 -268680363 - MER5A DNA MER1_type -20 169 3 351 269 11 0 chr1 13513534 13513627 -268680037 + MIR SINE MIR 24 117 -91 725 256 121 0 chr1 13513660 13513867 -268679797 - MIR SINE MIR -10 252 21 404 262 70 58 chr1 13513928 13514100 -268679564 - MIR SINE MIR -10 252 79 275 357 62 27 chr1 13514456 13514645 -268679019 - MIR SINE MIR -56 206 20 * 429 244 72 23 chr1 13514641 13514790 -268678874 - MIR3 SINE MIR -37 171 16 30 77 0 0 chr1 13516810 13516875 -268676789 + GC_rich Low_complexity Low_complexity 1 65 0 240 278 29 23 chr1 13516904 13517077 -268676587 + (CGGGG)n Simple_repeat Simple_repeat 1 174 0 263 340 71 0 chr1 13517702 13517843 -268675821 + MIR SINE MIR 46 196 -66 250 272 65 33 chr1 13518952 13519044 -268674620 + MIR SINE MIR 24 118 -90 218 341 0 33 chr1 13519739 13519830 -268673834 - MIR3 SINE MIR -114 94 7 555 245 57 25 chr1 13520863 13521022 -268672642 + MIR SINE MIR 87 250 -12 458 303 76 20 chr1 13521640 13521838 -268671826 + L2 LINE L2 2550 2758 -556 1107 216 80 38 chr1 13521840 13522347 -268671317 + MLT1E LTR MaLR 2 593 0 349 355 49 47 chr1 13522379 13522805 -268670859 + L2 LINE L2 2804 3230 -83 1804 164 0 35 chr1 13522807 13523117 -268670547 - AluJb SINE Alu -8 304 6 563 324 34 10 chr1 13523818 13524022 -268669642 + MIR SINE MIR 17 225 -37 182 282 105 89 chr1 13524087 13524211 -268669453 - L2 LINE L2 -11 3261 3136 240 367 51 0 chr1 13524645 13524743 -268668921 + L2 LINE L2 3170 3272 0 1145 151 0 57 chr1 13525962 13526154 -268667510 + AluY SINE Alu 2 182 -129 1556 187 67 36 chr1 13526255 13526508 -268667156 - MLT1C LTR MaLR -98 369 100 2346 105 0 7 chr1 13526508 13526812 -268666852 - AluSx SINE Alu -10 302 1 1556 187 67 36 chr1 13526812 13526916 -268666748 - MLT1C LTR MaLR -367 100 1 543 258 65 21 chr1 13526966 13527152 -268666512 - LTR33 LTR ERVL -7 514 321 3324 125 32 28 chr1 13527264 13527382 -268666282 + MER4A LTR ERV1 1 117 -483 2314 88 0 49 chr1 13527382 13527710 -268665954 + AluSx SINE Alu 1 312 0 3324 125 32 28 chr1 13527710 13528189 -268665475 + MER4A LTR ERV1 117 600 0 1135 221 22 44 chr1 13528246 13528563 -268665101 + L1MC2 LINE L1 5914 6223 -121 200 228 0 54 chr1 13528563 13528655 -268665009 + (TA)n Simple_repeat Simple_repeat 2 88 0 550 169 107 9 chr1 13528655 13528814 -268664850 + L1MC2 LINE L1 6191 7777 -8 1514 162 15 99 chr1 13528814 13529001 -268664663 - AluJo SINE Alu -6 306 158 203 0 37 0 chr1 13529001 13529028 -268664636 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1514 162 15 99 chr1 13529028 13529174 -268664490 - AluJo SINE Alu -154 158 1 1004 109 95 0 chr1 13529176 13529345 -268664319 - AluY SINE Alu 0 311 133 2050 115 0 48 chr1 13529345 13529657 -268664007 - AluY SINE Alu -14 297 1 189 0 0 0 chr1 13529675 13529696 -268663968 + (TAAAA)n Simple_repeat Simple_repeat 4 24 0 2247 74 7 7 chr1 13530661 13530985 -268662679 - AluSx SINE Alu 0 324 1 229 333 56 0 chr1 13531105 13531213 -268662451 - MIR SINE MIR -57 151 38 719 487 88 0 chr1 13531856 13532147 -268661517 + AluSx SINE Alu 1 314 0 514 226 203 0 chr1 13532153 13532330 -268661334 - MIR SINE MIR -16 246 34 412 278 0 35 chr1 13532326 13532441 -268661223 - L2 LINE L2 -1 3312 3202 * 2112 154 0 0 chr1 13532518 13532829 -268660835 - AluSx SINE Alu -1 311 1 236 200 20 0 chr1 13533174 13533224 -268660440 - MLT1L LTR MaLR -562 53 3 2425 94 0 0 chr1 13533683 13533982 -268659682 + AluSg SINE Alu 3 301 -9 242 304 10 111 chr1 13534154 13534361 -268659303 - L2 LINE L2 -190 3082 2897 203 250 54 18 chr1 13534402 13534458 -268659206 - MIR SINE MIR -133 75 18 417 218 191 9 chr1 13535479 13535589 -268658075 + MIR SINE MIR 20 149 -59 382 305 134 0 chr1 13535945 13536109 -268657555 - L1ME LINE L1 -306 5815 5630 573 260 120 14 chr1 13536222 13536459 -268657205 + L1ME4a LINE L1 5334 5545 -576 2151 99 0 10 chr1 13536459 13536762 -268656902 + AluSg SINE Alu 1 300 -10 573 260 120 14 chr1 13536762 13536909 -268656755 + L1ME4a LINE L1 5545 5860 -261 318 26 0 0 chr1 13536965 13537004 -268656660 + (CA)n Simple_repeat Simple_repeat 2 40 0 508 277 0 8 chr1 13537799 13537929 -268655735 - LTR67 LTR ERVL -3 554 426 1993 141 0 0 chr1 13538141 13538438 -268655226 + AluJb SINE Alu 6 302 -10 990 232 48 71 chr1 13538568 13538860 -268654804 + MLT1C LTR MaLR 6 288 -179 1699 74 0 26 chr1 13538860 13539090 -268654574 + AluSg/x SINE Alu 71 294 -16 990 232 48 71 chr1 13539090 13539176 -268654488 + MLT1C LTR MaLR 288 375 -92 2139 94 0 22 chr1 13539389 13539707 -268653957 - AluY SINE Alu 0 311 1 183 186 0 0 chr1 13539748 13539791 -268653873 + CT-rich Low_complexity Low_complexity 2 44 0 998 200 6 2 chr1 13539791 13540023 -268653641 + MLT1B LTR MaLR 173 386 0 198 191 0 0 chr1 13540148 13540195 -268653469 + GA-rich Low_complexity Low_complexity 3 49 0 1755 166 0 10 chr1 13540305 13540612 -268653052 + AluSx SINE Alu 1 304 -8 657 293 27 22 chr1 13540815 13541040 -268652624 - MIR SINE MIR -6 256 31 2130 92 9 28 chr1 13541142 13541459 -268652205 - AluSx SINE Alu -1 311 1 288 137 0 0 chr1 13541929 13541980 -268651684 + (GGGGA)n Simple_repeat Simple_repeat 4 54 0 401 231 320 10 chr1 13542030 13542433 -268651231 + L2 LINE L2 2721 3262 -51 631 317 49 8 chr1 13542740 13542986 -268650678 - MIR SINE MIR -6 256 1 2245 93 3 0 chr1 13543007 13543309 -268650355 + AluSp SINE Alu 1 303 -10 2333 85 3 0 chr1 13543310 13543617 -268650047 + AluY SINE Alu 1 308 -3 424 251 86 74 chr1 13543705 13543880 -268649784 + L1MEd LINE L1 231 407 -5712 1729 94 45 0 chr1 13543946 13544191 -268649473 - AluSx SINE Alu -56 256 1 8138 204 24 36 chr1 13544401 13547280 -268646384 - HERVH LTR ERV1 -3792 2737 1 846 157 112 60 chr1 13547280 13547667 -268645997 - LTR7 LTR ERV1 0 450 1 387 238 117 0 chr1 13547860 13548004 -268645660 - LTR10A-int LTR ERV1 -7420 365 288 1048 204 43 132 chr1 13548010 13548361 -268645303 - LTR10A-int LTR ERV1 -6335 314 1 1695 166 181 55 chr1 13548370 13548857 -268644807 - LTR10A LTR ERV1 -61 548 1 441 125 0 12 chr1 13548857 13548936 -268644728 + Tigger7 DNA MER2_type 2333 2410 -77 372 191 181 29 chr1 13548953 13548978 -268644686 + Tigger7 DNA MER2_type 2367 2387 -100 1990 147 26 18 chr1 13548978 13549250 -268644414 + MER2 DNA MER2_type 2 279 -65 1623 151 24 14 chr1 13549250 13549542 -268644122 - AluSx SINE Alu -17 295 1 1990 147 26 18 chr1 13549542 13549609 -268644055 + MER2 DNA MER2_type 279 344 0 372 191 181 29 chr1 13549609 13549688 -268643976 + Tigger7 DNA MER2_type 2387 2487 0 937 218 96 102 chr1 13549690 13550213 -268643451 + Charlie2 DNA MER1_type 1833 2354 -508 1754 148 10 13 chr1 13550213 13550511 -268643153 + AluSp SINE Alu 1 297 -16 937 218 96 102 chr1 13550511 13550547 -268643117 + Charlie2 DNA MER1_type 2354 2389 -473 581 300 86 9 chr1 13550699 13550919 -268642745 - MIR SINE MIR 0 262 26 2140 110 7 0 chr1 13550932 13551242 -268642422 - AluSp SINE Alu -1 312 1 2320 83 0 3 chr1 13552902 13553215 -268640449 - AluSp SINE Alu -1 312 1 247 250 0 0 chr1 13553603 13553667 -268639997 + Charlie2 DNA MER1_type 2422 2485 -377 2228 85 0 3 chr1 13553671 13553965 -268639699 + AluSg SINE Alu 1 293 -17 764 186 9 95 chr1 13554031 13554153 -268639511 + Charlie2 DNA MER1_type 2652 2746 -116 2087 91 3 10 chr1 13554153 13554450 -268639214 - AluSg SINE Alu -15 295 1 764 186 9 95 chr1 13554450 13554558 -268639106 + Charlie2 DNA MER1_type 2746 2862 0 293 231 264 33 chr1 13554772 13554893 -268638771 - MIR SINE MIR -110 152 4 882 300 63 31 chr1 13554896 13555534 -268638130 - L1M4 LINE L1 -715 5446 4786 2228 57 0 23 chr1 13555534 13555833 -268637831 - AluY SINE Alu -18 293 2 882 300 63 31 chr1 13555833 13555907 -268637757 - L1M4 LINE L1 -1375 4786 4716 282 236 0 14 chr1 13555936 13555980 -268637684 - L1M4 LINE L1 -1796 4333 4289 1678 135 0 12 chr1 13555980 13556232 -268637432 - AluSg SINE Alu -16 294 46 282 236 0 14 chr1 13556232 13556259 -268637405 - L1M4 LINE L1 -1840 4289 4263 1289 190 130 11 chr1 13556260 13556529 -268637135 - AluJb SINE Alu -1 301 1 230 293 68 63 chr1 13556625 13557007 -268636657 - L1M4 LINE L1 -2579 3550 3167 286 137 20 0 chr1 13557007 13557058 -268636606 - MIR SINE MIR -28 234 183 780 234 78 92 chr1 13557095 13557608 -268636056 - L1M4 LINE L1 -5043 1076 571 227 352 32 0 chr1 13557810 13557935 -268635729 - L1M4 LINE L1 -5985 134 6 705 188 161 61 chr1 13557935 13558196 -268635468 - MER113 DNA MER1_type? -116 405 119 384 303 0 0 chr1 13558233 13558322 -268635342 - L1MC4 LINE L1 -1339 6703 6615 1841 172 0 0 chr1 13558326 13558623 -268635041 + AluJo SINE Alu 1 297 -15 1269 219 130 33 chr1 13559027 13559388 -268634276 + MSTD LTR MaLR 1 396 0 2320 80 0 3 chr1 13559593 13559894 -268633770 - AluSg SINE Alu -10 300 1 1812 70 117 0 chr1 13560375 13560658 -268633006 - AluSp SINE Alu 0 313 1 707 280 52 13 chr1 13560974 13561206 -268632458 + MIR SINE MIR 7 247 -15 1995 45 53 0 chr1 13561716 13561993 -268631671 - AluY SINE Alu 0 310 21 1386 259 130 14 chr1 13562052 13562538 -268631126 + MLT1F LTR MaLR 1 542 0 2238 99 0 0 chr1 13562589 13562893 -268630771 + AluY SINE Alu 2 305 -6 533 263 31 38 chr1 13563008 13563168 -268630496 + MIR SINE MIR 48 206 -56 1876 125 0 0 chr1 13563398 13563662 -268630002 - AluSx SINE Alu -48 264 1 2080 209 128 64 chr1 13563766 13564331 -268629333 + MER63D DNA MER1_type 1 529 -532 2186 125 0 0 chr1 13564331 13564643 -268629021 - AluSx SINE Alu 0 312 1 2080 209 128 64 chr1 13564643 13564828 -268628836 + MER63D DNA MER1_type 529 701 -360 491 15 0 31 chr1 13564828 13564893 -268628771 + (CTATT)n Simple_repeat Simple_repeat 3 65 0 2080 209 128 64 chr1 13564893 13565003 -268628661 + MER63D DNA MER1_type 701 917 -144 2272 104 0 0 chr1 13565030 13565337 -268628327 - AluSx SINE Alu -5 307 1 2425 153 31 27 chr1 13565343 13565648 -268628016 - L1MB5 LINE L1 -37 6137 5828 1386 157 33 62 chr1 13565648 13565953 -268627711 - AluJo SINE Alu -16 296 1 2425 153 31 27 chr1 13565953 13566093 -268627571 - L1MB5 LINE L1 -346 5828 5690 748 182 42 0 chr1 13566093 13566236 -268627428 + MER63D DNA MER1_type 909 1057 -4 465 289 30 24 chr1 13566261 13566427 -268627237 + MIR3 SINE MIR 13 179 -29 722 232 49 22 chr1 13566583 13566807 -268626857 + MER31A LTR ERV1 256 485 0 1821 101 87 7 chr1 13567118 13567406 -268626258 - AluSx SINE Alu -1 311 1 290 71 24 0 chr1 13567430 13567472 -268626192 - MER21B LTR ERV1 -202 661 619 369 335 63 6 chr1 13568568 13568726 -268624938 - MIR SINE MIR -49 213 47 2388 90 0 0 chr1 13569170 13569481 -268624183 - AluSp SINE Alu 0 313 3 1007 83 0 0 chr1 13569485 13569617 -268624047 - AluSp SINE Alu -181 132 1 1674 223 74 74 chr1 13569657 13570096 -268623568 + MLT1F LTR MaLR 1 442 -100 2171 106 0 3 chr1 13570096 13570399 -268623265 - AluSq SINE Alu -11 302 1 1674 223 74 74 chr1 13570399 13570501 -268623163 + MLT1F LTR MaLR 441 542 0 317 280 64 13 chr1 13570657 13570782 -268622882 - MER91B DNA MER1_type -1 139 3 331 296 33 100 chr1 13571004 13571244 -268622420 + MIR SINE MIR 6 229 -33 597 225 0 9 chr1 13571253 13571364 -268622300 - FLAM_C SINE Alu -28 115 6 183 300 0 67 chr1 13571379 13571469 -268622195 + L2 LINE L2 3229 3312 -1 1716 155 3 19 chr1 13572206 13572522 -268621142 + AluJo SINE Alu 1 311 -1 256 292 107 28 chr1 13572955 13573171 -268620493 - L2 LINE L2 -129 3184 2952 386 229 52 0 chr1 13573172 13573268 -268620396 - MER45A DNA AcHobo -1 177 77 258 262 210 39 chr1 13573282 13573511 -268620153 - L2 LINE L2 -341 2973 2706 798 164 0 34 chr1 13573511 13573657 -268620007 - FLAM_C SINE Alu -1 142 2 1987 88 88 3 chr1 13573667 13573951 -268619713 - AluSq SINE Alu -5 308 1 2212 76 10 3 chr1 13573951 13574241 -268619423 - AluSc SINE Alu -17 292 1 186 333 11 11 chr1 13574244 13574337 -268619327 - L2 LINE L2 -601 2713 2621 2043 123 0 13 chr1 13575703 13576005 -268617659 - AluSq SINE Alu -15 298 1 12115 98 4 1 chr1 13576272 13577903 -268615761 + HERVH LTR ERV1 4380 6016 -1697 3356 118 14 44 chr1 13577896 13578470 -268615194 + HERVH LTR ERV1 7157 7713 0 * 1298 168 207 44 chr1 13578470 13578857 -268614807 + LTR7 LTR ERV1 1 450 0 212 186 17 0 chr1 13579106 13579165 -268614499 + GA-rich Low_complexity Low_complexity 2 61 0 516 203 32 0 chr1 13579215 13579444 -268614220 + GA-rich Low_complexity Low_complexity 1 236 0 5627 94 19 41 chr1 13579450 13579883 -268613781 + HERV17 LTR ERV1 704 1145 -5751 2286 66 0 3 chr1 13579883 13580172 -268613492 + AluY SINE Alu 1 288 -23 5627 94 19 41 chr1 13580172 13580817 -268612847 + HERV17 LTR ERV1 1145 1718 -5178 267 274 167 0 chr1 13580817 13580901 -268612763 - LTR8 LTR ERV1 -434 257 160 11824 156 12 19 chr1 13580908 13584082 -268609582 + Harlequin LTR ERV1 1804 6647 -2 1843 142 127 43 chr1 13584126 13584543 -268609121 + LTR10A LTR ERV1 97 548 -61 1836 137 42 118 chr1 13584556 13584903 -268608761 - MER44D DNA MER2_type -2033 454 90 1437 163 41 41 chr1 13584903 13585198 -268608466 - AluJb SINE Alu -17 295 1 1836 137 42 118 chr1 13585198 13585281 -268608383 - MER44D DNA MER2_type -2397 90 2 670 235 50 0 chr1 13585284 13585463 -268608201 - Charlie2a DNA MER1_type -1033 1829 1642 2247 86 16 0 chr1 13585467 13585771 -268607893 - AluSp SINE Alu 0 313 5 552 248 0 0 chr1 13585785 13585906 -268607758 - FLAM_A SINE Alu -10 132 12 2184 45 0 31 chr1 13585921 13586259 -268607405 - AluY SINE Alu 0 329 1 478 176 155 7 chr1 13586272 13586414 -268607250 - Charlie2a DNA MER1_type -1214 1648 1486 1721 161 10 0 chr1 13586419 13586711 -268606953 - AluJo SINE Alu -17 295 1 1249 256 141 44 chr1 13586797 13587216 -268606448 - Charlie2b DNA MER1_type -2112 670 180 2110 118 3 0 chr1 13587216 13587520 -268606144 - AluSx SINE Alu -7 305 1 1249 256 141 44 chr1 13587520 13587667 -268605997 - Charlie2b DNA MER1_type -2602 180 49 410 326 41 20 chr1 13587715 13587911 -268605753 + L2 LINE L2 3113 3312 -1 2201 76 0 0 chr1 13589670 13589973 -268603691 + AluSc SINE Alu 5 307 0 266 316 0 0 chr1 13590691 13590770 -268602894 + Charlie2 DNA MER1_type 46 124 -2738 860 140 7 0 chr1 13590781 13590917 -268602747 - FLAM_C SINE Alu -6 137 1 2396 69 3 0 chr1 13590923 13591227 -268602437 - AluSp SINE Alu -8 305 1 274 167 24 119 chr1 13591289 13591373 -268602291 + Charlie2 DNA MER1_type 204 279 -2503 2148 201 66 0 chr1 13591440 13591882 -268601782 - LTR51 LTR ERV1 0 671 201 23 33 0 0 chr1 13591991 13592021 -268601643 + AT_rich Low_complexity Low_complexity 1 30 0 1506 183 4 15 chr1 13592026 13592299 -268601365 - AluJo SINE Alu -35 277 8 868 142 41 41 chr1 13592704 13592873 -268600791 + MER5A DNA MER1_type 6 174 -15 228 234 156 0 chr1 13593855 13593919 -268599745 + MER5A DNA MER1_type 16 89 -100 219 229 16 84 chr1 13594043 13594126 -268599538 - MER5A DNA MER1_type -72 106 29 44 35 0 0 chr1 13594871 13594929 -268598735 + AT_rich Low_complexity Low_complexity 1 58 0 370 273 87 31 chr1 13596304 13596465 -268597199 + L2 LINE L2 3140 3309 -4 180 0 0 0 chr1 13598119 13598139 -268595525 + (A)n Simple_repeat Simple_repeat 1 20 0 1854 116 56 0 chr1 13598141 13598426 -268595238 + AluSg SINE Alu 1 301 -9 195 42 0 0 chr1 13599486 13599510 -268594154 + (CA)n Simple_repeat Simple_repeat 2 25 0 302 170 64 64 chr1 13599920 13600014 -268593650 - L1MCa LINE L1 -4355 2071 1978 28 0 0 0 chr1 13600016 13600044 -268593620 + AT_rich Low_complexity Low_complexity 1 28 0 1749 131 51 0 chr1 13600047 13600322 -268593342 - AluJb SINE Alu -23 289 1 272 276 81 11 chr1 13600344 13600431 -268593233 - L2 LINE L2 -8 3264 3172 408 321 93 0 chr1 13600831 13601068 -268592596 - MIR SINE MIR 0 262 4 240 35 0 0 chr1 13601176 13601205 -268592459 + (ATTG)n Simple_repeat Simple_repeat 4 32 0 1942 110 0 0 chr1 13601205 13601478 -268592186 - AluSx SINE Alu -32 280 8 1742 154 26 3 chr1 13601667 13601972 -268591692 - AluSx SINE Alu 0 312 1 349 283 168 0 chr1 13602448 13602561 -268591103 - L2 LINE L2 -3 3310 3179 2076 97 3 13 chr1 13602667 13602967 -268590697 - AluSc SINE Alu -12 297 1 2028 109 7 0 chr1 13603029 13603314 -268590350 - AluSx SINE Alu 0 312 26 285 327 20 65 chr1 13603331 13603484 -268590180 + L2 LINE L2 3164 3309 -4 2015 119 10 0 chr1 13604027 13604320 -268589344 - AluSq SINE Alu -17 296 1 1117 206 61 4 chr1 13604341 13604588 -268589076 - MER31B LTR ERV1 0 466 206 1772 167 0 0 chr1 13605018 13605312 -268588352 - AluSx SINE Alu -18 294 1 2072 68 0 8 chr1 13605729 13605995 -268587669 + AluY SINE Alu 30 293 -18 1821 107 4 22 chr1 13606251 13606523 -268587141 - AluSx SINE Alu -45 267 1 816 165 0 0 chr1 13606553 13606674 -268586990 + FLAM_C SINE Alu 2 122 -21 26 0 0 0 chr1 13606674 13606700 -268586964 + AT_rich Low_complexity Low_complexity 1 26 0 198 171 0 0 chr1 13606727 13606768 -268586896 + GA-rich Low_complexity Low_complexity 4 44 0 1888 119 0 4 chr1 13606790 13607059 -268586605 + AluSq SINE Alu 35 302 -11 1145 136 0 0 chr1 13607248 13607417 -268586247 - AluSg/x SINE Alu -15 297 129 208 300 0 0 chr1 13607517 13607557 -268586107 + C-rich Low_complexity Low_complexity 1 40 0 192 200 0 0 chr1 13607603 13607643 -268586021 + (TG)n Simple_repeat Simple_repeat 1 40 0 2156 106 0 0 chr1 13609026 13609318 -268584346 - AluSc SINE Alu -17 292 1 1742 133 48 48 chr1 13609407 13609701 -268583963 - AluSq SINE Alu -19 294 1 871 163 0 68 chr1 13609918 13610108 -268583556 + FRAM SINE Alu 1 176 0 23 33 0 0 chr1 13610768 13610798 -268582866 + AT_rich Low_complexity Low_complexity 1 30 0 473 161 12 0 chr1 13610860 13610941 -268582723 - MER6B DNA MER2_type -1 209 128 * 695 171 0 0 chr1 13610911 13611022 -268582642 - MER6B DNA MER2_type -165 111 1 225 161 247 25 chr1 13611083 13611164 -268582500 - MER5C DNA MER1_type 0 324 226 326 186 71 106 chr1 13611184 13611220 -268582444 - MER5C DNA MER1_type -200 124 88 2224 100 0 0 chr1 13611220 13611521 -268582143 + AluSq SINE Alu 1 301 -12 326 186 71 106 chr1 13611521 13611597 -268582067 - MER5C DNA MER1_type -236 88 16 293 347 140 0 chr1 13611786 13611979 -268581685 + L2 LINE L2 2815 3034 -279 1543 162 79 7 chr1 13612010 13612301 -268581363 - LTR10B LTR ERV1 0 505 176 1005 192 49 5 chr1 13612397 13612600 -268581064 + MER58A DNA MER1_type 5 216 -8 414 260 36 68 chr1 13612633 13612825 -268580839 + L2 LINE L2 3111 3296 -17 2358 104 34 3 chr1 13612826 13613182 -268580482 - L1MB2 LINE L1 -2 6169 5803 2133 98 10 0 chr1 13613182 13613479 -268580185 + AluSp SINE Alu 1 300 -13 430 198 9 9 chr1 13613619 13613725 -268579939 + AluSp/q SINE Alu 206 311 -2 698 207 30 7 chr1 13613725 13613889 -268579775 - L1MB2 LINE L1 -357 5814 5653 2320 75 0 0 chr1 13614572 13614880 -268578784 + AluY SINE Alu 2 309 -2 2623 151 36 4 chr1 13614901 13615378 -268578286 + L1MB3 LINE L1 5684 6175 -8 252 213 66 0 chr1 13616697 13616758 -268576906 - MLT1J LTR MaLR 0 511 447 180 0 0 0 chr1 13617507 13617527 -268576137 + (T)n Simple_repeat Simple_repeat 1 20 0 1027 134 114 124 chr1 13618139 13618437 -268575227 + AluJo SINE Alu 2 296 -6 2117 104 10 7 chr1 13618912 13619220 -268574444 - AluSc SINE Alu 0 309 1 2675 97 0 0 chr1 13619848 13620197 -268573467 + HSMAR1 DNA Mariner 938 1286 -1 1379 114 92 13 chr1 13620197 13620425 -268573239 + MSTB1 LTR MaLR 187 432 0 638 241 70 26 chr1 13620564 13620792 -268572872 - MLT1L LTR MaLR -229 386 149 399 265 55 107 chr1 13621757 13622100 -268571564 + L2 LINE L2 2749 3066 -247 1062 195 67 158 chr1 13622290 13622432 -268571232 + MLT1A1 LTR MaLR 1 154 -211 2464 68 0 0 chr1 13622432 13622741 -268570923 - AluY SINE Alu -2 309 1 1062 195 67 158 chr1 13622741 13623034 -268570630 + MLT1A1 LTR MaLR 154 365 0 353 281 0 0 chr1 13623168 13623250 -268570414 + L2 LINE L2 3232 3313 0 181 269 74 56 chr1 13623609 13623717 -268569947 + L2 LINE L2 3149 3258 -55 2652 222 2 14 chr1 13623718 13624226 -268569438 - MLT1F LTR MaLR -15 527 26 1195 299 32 44 chr1 13624287 13624864 -268568800 + L2 LINE L2 2709 3276 -37 1666 136 103 81 chr1 13624864 13625283 -268568381 + MSTA LTR MaLR 1 428 0 1195 299 32 44 chr1 13625283 13625321 -268568343 + L2 LINE L2 3276 3313 0 420 193 8 126 chr1 13625367 13625435 -268568229 + MER5C DNA MER1_type 20 70 -254 2274 94 0 0 chr1 13625435 13625732 -268567932 + AluSq SINE Alu 1 297 -16 420 193 8 126 chr1 13625732 13625782 -268567882 + MER5C DNA MER1_type 70 124 -200 1949 144 0 7 chr1 13626070 13626375 -268567289 - AluJb SINE Alu -9 303 1 7797 79 5 41 chr1 13626500 13627612 -268566052 + MER11C LTR ERVK 1 1071 0 375 181 0 36 chr1 13627636 13627719 -268565945 + MER116 DNA Mariner 1 80 0 997 189 15 5 chr1 13627791 13627987 -268565677 + AluJb SINE Alu 87 284 -28 1058 132 0 0 chr1 13628027 13628186 -268565478 - FRAM SINE Alu -21 155 1 2274 83 0 0 chr1 13628830 13629119 -268564545 - AluSg SINE Alu -17 293 5 518 260 85 25 chr1 13629895 13630249 -268563415 + L1M4 LINE L1 3092 3466 -2680 669 173 9 0 chr1 13630342 13630452 -268563212 + FLAM_C SINE Alu 11 121 -22 2196 83 10 0 chr1 13631882 13632171 -268561493 + AluSc SINE Alu 1 292 -17 833 276 171 27 chr1 13632356 13632918 -268560746 - L1M4 LINE L1 -1979 4167 3525 1284 69 0 98 chr1 13633053 13633256 -268560408 + Charlie3 DNA MER1_type 2524 2706 -4 * 1329 165 135 76 chr1 13633254 13633535 -268560129 - MLT1C LTR MaLR -46 421 109 927 83 0 30 chr1 13633535 13633668 -268559996 - FLAM_C SINE Alu 0 133 5 1329 165 135 76 chr1 13633668 13633779 -268559885 - MLT1C LTR MaLR -358 109 6 1787 135 45 0 chr1 13633897 13634186 -268559478 - AluJb SINE Alu -10 302 1 2285 104 0 3 chr1 13634798 13635097 -268558567 + AluSg SINE Alu 6 303 -7 3991 181 40 12 chr1 13635227 13635695 -268557969 - L1MB3 LINE L1 -155 6028 5574 589 216 9 9 chr1 13635695 13635833 -268557831 - FLAM_A SINE Alu 0 139 2 3991 181 40 12 chr1 13635833 13636534 -268557130 - L1MB3 LINE L1 -609 5574 4822 304 296 43 0 chr1 13637591 13637706 -268555958 + MIR3 SINE MIR 82 201 -7 266 256 44 7 chr1 13638091 13638228 -268555436 + (TA)n Simple_repeat Simple_repeat 1 142 0 516 120 91 28 chr1 13639016 13639145 -268554519 + MSTA LTR MaLR 211 428 0 210 158 0 0 chr1 13639449 13639487 -268554177 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 3014 114 7 14 chr1 13639554 13639991 -268553673 + MER57B LTR ERV1 1 434 0 450 223 45 109 chr1 13640074 13640294 -268553370 - MIR SINE MIR -32 230 25 740 133 83 0 chr1 13640338 13640458 -268553206 + FLAM_C SINE Alu 3 132 -1 254 241 71 62 chr1 13640513 13640625 -268553039 + L1MB8 LINE L1 5710 5822 -340 1139 196 0 60 chr1 13640914 13640979 -268552685 + MER58A DNA MER1_type 4 71 -2349 1914 105 10 61 chr1 13640979 13641275 -268552389 - AluSg SINE Alu -9 301 21 1139 196 0 60 chr1 13641275 13641444 -268552220 + MER58A DNA MER1_type 71 224 0 259 150 25 0 chr1 13641486 13641545 -268552119 + MIR SINE MIR 94 140 -68 502 160 6 141 chr1 13641584 13641740 -268551924 + L1MB8 LINE L1 5960 6094 -84 1112 113 39 87 chr1 13641758 13641988 -268551676 - MER20 DNA MER1_type 0 219 1 2071 114 34 0 chr1 13642792 13643089 -268550575 - AluSx SINE Alu -5 307 1 345 314 39 0 chr1 13643175 13643277 -268550387 - MER81 DNA DNA 0 114 9 372 128 0 96 chr1 13644442 13644536 -268549128 - L1PA11 LINE L1 0 6174 6090 180 135 0 0 chr1 13644697 13644734 -268548930 + (T)n Simple_repeat Simple_repeat 1 37 0 2309 103 0 10 chr1 13644855 13645166 -268548498 + AluSx SINE Alu 1 308 -4 2350 116 0 0 chr1 13645591 13645901 -268547763 - AluSg SINE Alu 0 310 1 2484 62 10 0 chr1 13645911 13646215 -268547449 - AluY SINE Alu -4 307 1 697 218 0 0 chr1 13646270 13646403 -268547261 - FLAM_A SINE Alu 0 133 1 21 36 0 0 chr1 13646841 13646869 -268546795 + AT_rich Low_complexity Low_complexity 1 28 0 5890 41 0 3 chr1 13647061 13647763 -268545901 - L1PA8 LINE L1 -4 6168 5469 833 254 106 106 chr1 13647857 13648166 -268545498 - MLT1K LTR MaLR 0 588 280 2218 97 0 17 chr1 13648166 13648464 -268545200 + AluSp SINE Alu 1 293 -20 833 254 106 106 chr1 13648464 13648698 -268544966 - MLT1K LTR MaLR -308 280 42 2218 108 3 0 chr1 13648698 13648993 -268544671 + AluSx SINE Alu 3 298 -14 833 254 106 106 chr1 13648993 13649035 -268544629 - MLT1K LTR MaLR -545 43 2 1106 60 0 8 chr1 13649410 13649543 -268544121 - AluY SINE Alu -179 132 1 2517 85 0 0 chr1 13649543 13649850 -268543814 - AluSx SINE Alu -5 307 1 2740 180 15 21 chr1 13650297 13650977 -268542687 - L1MB5 LINE L1 -265 5909 5227 1824 150 21 3 chr1 13650977 13651264 -268542400 - AluJb SINE Alu -20 292 1 2740 180 15 21 chr1 13651264 13651438 -268542226 - L1MB5 LINE L1 -947 5227 5054 1606 103 4 30 chr1 13651438 13651670 -268541994 - AluSp SINE Alu -9 304 79 2740 180 15 21 chr1 13651670 13651705 -268541959 - L1MB5 LINE L1 -1120 5054 5020 2584 115 58 19 chr1 13651705 13652115 -268541549 - MSTB LTR MaLR 0 426 1 2740 180 15 21 chr1 13652115 13652308 -268541356 - L1MB5 LINE L1 -1154 5020 4768 689 225 0 0 chr1 13652308 13652428 -268541236 - FLAM_A SINE Alu -9 124 5 2568 166 25 53 chr1 13652442 13653004 -268540660 - L1MA9 LINE L1 -36 6276 5731 461 180 20 50 chr1 13653001 13653101 -268540563 - L1MB5 LINE L1 -1367 4779 4683 * 297 174 0 0 chr1 13653115 13653161 -268540503 + Charlie5 DNA MER1_type 361 406 -2206 * 479 154 22 22 chr1 13653154 13653245 -268540419 + Charlie5 DNA MER1_type 2495 2585 -27 2822 72 6 6 chr1 13653544 13653906 -268539758 - THE1B LTR MaLR 0 364 3 306 267 158 12 chr1 13653942 13654107 -268539557 - MLT1L LTR MaLR -422 193 5 2254 99 3 3 chr1 13655018 13655310 -268538354 - AluSc SINE Alu -17 292 1 1413 224 29 7 chr1 13655356 13655637 -268538027 + AluJb SINE Alu 1 287 -25 2555 54 0 3 chr1 13655818 13656115 -268537549 - AluY SINE Alu -15 296 1 215 273 30 0 chr1 13656167 13656233 -268537431 - L2 LINE L2 -4 3268 3201 415 245 58 101 chr1 13656263 13656471 -268537193 - MIR SINE MIR -25 237 40 2476 109 34 0 chr1 13656491 13656841 -268536823 - THE1C LTR MaLR -13 362 1 195 317 85 24 chr1 13656881 13656963 -268536701 - L2 LINE L2 -181 3091 3005 1624 173 73 12 chr1 13657652 13657994 -268535670 + MER47A DNA MER2_type 1 363 -3 255 255 202 0 chr1 13658362 13658456 -268535208 + L2 LINE L2 3160 3272 0 225 256 22 22 chr1 13658851 13658941 -268534723 + (TATATG)n Simple_repeat Simple_repeat 4 93 0 464 140 4 25 chr1 13659054 13659312 -268534352 + AluSq SINE Alu 1 309 -4 2129 104 7 0 chr1 13659620 13659924 -268533740 - AluSx SINE Alu 0 306 1 837 225 31 64 chr1 13659953 13660271 -268533393 + MLT2D LTR ERVL 83 391 -73 1546 101 0 0 chr1 13661246 13661445 -268532219 - AluSc SINE Alu -110 199 1 2155 98 10 10 chr1 13662012 13662309 -268531355 - AluSc SINE Alu -12 297 1 681 125 10 10 chr1 13662729 13662833 -268530831 + FLAM_A SINE Alu 20 123 -19 259 247 35 24 chr1 13662835 13662920 -268530744 + MIR SINE MIR 46 131 -77 2114 245 158 9 chr1 13664359 13665434 -268528230 - L2 LINE L2 0 3313 2075 2380 66 0 7 chr1 13665531 13665840 -268527824 + AluY SINE Alu 1 307 0 213 329 109 16 chr1 13666197 13666519 -268527145 + L2 LINE L2 1865 2216 -1098 * 274 296 62 0 chr1 13666518 13666599 -268527065 + L2 LINE L2 3199 3284 -29 691 194 0 30 chr1 13666831 13666965 -268526699 - FLAM_A SINE Alu -2 131 2 432 135 203 0 chr1 13666976 13667050 -268526614 - 5S rRNA rRNA -32 89 1 1602 260 32 40 chr1 13667413 13667656 -268526008 + LTR33 LTR ERVL 1 244 -277 2418 85 0 3 chr1 13667656 13667951 -268525713 - AluSx SINE Alu -18 294 1 1602 260 32 40 chr1 13667951 13668230 -268525434 + LTR33 LTR ERVL 244 519 -2 2486 87 3 0 chr1 13669024 13669336 -268524328 - AluSq SINE Alu 0 313 1 2552 42 0 29 chr1 13669431 13669738 -268523926 - AluY SINE Alu -13 298 1 29 0 0 0 chr1 13669745 13669774 -268523890 + AT_rich Low_complexity Low_complexity 1 29 0 778 209 6 31 chr1 13670380 13670543 -268523121 + FRAM SINE Alu 3 161 -5 1463 173 36 0 chr1 13670607 13670855 -268522809 + AluSq SINE Alu 44 300 -13 253 154 0 0 chr1 13672287 13672326 -268521338 + 5S rRNA rRNA 4 42 -79 2352 103 0 3 chr1 13672747 13673049 -268520615 - AluSx SINE Alu -11 301 1 2539 63 0 28 chr1 13673940 13674259 -268519405 - AluY SINE Alu 0 311 2 304 296 56 21 chr1 13674290 13674432 -268519232 - MIR SINE MIR -106 156 10 2350 190 73 41 chr1 13675905 13676115 -268517549 + L1ME4a LINE L1 4672 4874 -1300 2564 59 3 3 chr1 13676115 13676421 -268517243 + AluSp SINE Alu 1 306 -7 2350 190 73 41 chr1 13676421 13677104 -268516560 + L1ME4a LINE L1 4874 5605 -569 885 195 0 0 chr1 13677109 13677258 -268516406 + FRAM SINE Alu 5 153 -23 2018 145 17 20 chr1 13677266 13677617 -268516047 + L1MB7 LINE L1 5816 6165 -19 344 88 0 35 chr1 13677653 13677710 -268515954 + L1M LINE L1 5330 5384 -790 946 187 28 6 chr1 13679476 13679658 -268514006 + MER20 DNA MER1_type 34 219 0 295 264 169 22 chr1 13680499 13680677 -268512987 + L1ME4a LINE L1 5754 5957 -164 776 151 0 27 chr1 13681001 13681147 -268512517 + AluSg/x SINE Alu 164 305 -5 733 272 95 59 chr1 13681901 13682435 -268511229 + L1MC4 LINE L1 5344 5857 -1951 2150 129 3 0 chr1 13682435 13682744 -268510920 + AluSx SINE Alu 1 310 -2 733 272 95 59 chr1 13682744 13683410 -268510254 + L1MC4 LINE L1 5857 6581 -1227 2268 103 3 0 chr1 13683410 13683711 -268509953 + AluSq SINE Alu 3 304 -9 733 272 95 59 chr1 13683711 13684095 -268509569 + L1MC4 LINE L1 6581 6950 -858 680 209 9 65 chr1 13684153 13684386 -268509278 + L1MC5 LINE L1 6957 7094 -714 2398 64 0 7 chr1 13684387 13684685 -268508979 + AluY SINE Alu 1 296 -15 318 268 45 58 chr1 13684889 13685139 -268508525 + L1MC4 LINE L1 7293 7649 -393 2286 78 92 9 chr1 13685251 13685586 -268508078 + L1PA14 LINE L1 5794 6156 -5 370 155 0 0 chr1 13686732 13686790 -268506874 + Alu SINE Alu 244 301 -1 2388 74 3 0 chr1 13687610 13687909 -268505755 - AluSc SINE Alu -9 300 1 1808 124 68 45 chr1 13688222 13688602 -268505062 + Charlie1 DNA MER1_type 2346 2734 -27 2246 70 0 20 chr1 13688603 13688905 -268504759 + AluY SINE Alu 1 296 -15 352 316 125 6 chr1 13688946 13689114 -268504550 - MIR SINE MIR -72 190 3 1101 143 16 21 chr1 13689373 13689562 -268504102 + MSTB1 LTR MaLR 1 188 -244 5149 99 10 28 chr1 13689562 13690222 -268503442 + HSMAR1 DNA Mariner 1 649 -638 2155 54 47 39 chr1 13690222 13690526 -268503138 + AluY SINE Alu 1 306 0 5149 99 10 28 chr1 13690526 13690591 -268503073 + HSMAR1 DNA Mariner 649 714 -573 207 244 0 0 chr1 13694540 13694581 -268499083 + (CGTG)n Simple_repeat Simple_repeat 4 44 0 2156 126 0 3 chr1 13694793 13695086 -268498578 - AluSx SINE Alu -20 292 1 337 285 95 15 chr1 13695088 13695225 -268498439 + MIR SINE MIR 94 241 -21 217 313 16 0 chr1 13695487 13695551 -268498113 - L2 LINE L2 -15 3298 3234 1768 200 97 34 chr1 13696218 13696693 -268496971 + MLT1D LTR MaLR 1 505 0 446 145 0 0 chr1 13696823 13696899 -268496765 - MSTA LTR MaLR -352 76 1 923 300 33 37 chr1 13696902 13697464 -268496200 - L2 LINE L2 -37 3276 2722 2648 222 2 14 chr1 13697536 13698044 -268495620 + MLT1F LTR MaLR 26 527 -15 303 293 0 0 chr1 13698527 13698609 -268495055 - L2 LINE L2 0 3313 3232 1059 205 0 5 chr1 13698743 13698938 -268494726 - MLT1A1 LTR MaLR 0 365 172 377 123 0 110 chr1 13698962 13699035 -268494629 - MLT1A1 LTR MaLR -170 204 140 2361 68 0 32 chr1 13699036 13699347 -268494317 + AluY SINE Alu 1 301 -10 1837 101 65 14 chr1 13699355 13699633 -268494031 + AluSg SINE Alu 2 293 -17 2012 122 7 0 chr1 13750569 13750863 -268442801 + AluSx SINE Alu 1 296 -16 212 289 0 19 chr1 13752284 13752336 -268441328 + MIR SINE MIR 22 72 -190 602 278 0 40 chr1 13752712 13752888 -268440776 - MER58B DNA MER1_type -1 340 172 279 347 0 0 chr1 13753026 13753173 -268440491 + G-rich Low_complexity Low_complexity 1 147 0 4926 240 27 13 chr1 13753254 13754605 -268439059 - L1P LINE L1 -898 5248 3880 192 262 0 0 chr1 13755345 13755387 -268438277 + MIR SINE MIR 33 74 -134 1728 179 18 34 chr1 13755504 13755884 -268437780 + MLT1A2 LTR MaLR 1 374 0 34 0 0 0 chr1 13755898 13755932 -268437732 + AT_rich Low_complexity Low_complexity 1 34 0 1577 178 61 56 chr1 13757121 13757481 -268436183 - MLT1A2 LTR MaLR -12 362 1 2307 76 6 31 chr1 13757804 13758121 -268435543 - AluSc SINE Alu 0 309 1 226 196 120 43 chr1 13758351 13758443 -268435221 - MIR3 SINE MIR -22 186 88 474 275 55 59 chr1 13758911 13759147 -268434517 - L2 LINE L2 -208 3105 2871 200 291 38 38 chr1 13759226 13759305 -268434359 - L2 LINE L2 -588 2726 2648 427 293 0 14 chr1 13760402 13760542 -268433122 - MIR SINE MIR 0 262 125 1043 278 46 9 chr1 13760657 13760984 -268432680 - L1ME2 LINE L1 -10 6154 5816 25 65 0 0 chr1 13761169 13761215 -268432449 + AT_rich Low_complexity Low_complexity 1 46 0 679 243 53 5 chr1 13761604 13761810 -268431854 + MIR SINE MIR 47 262 0 273 275 166 13 chr1 13762832 13763061 -268430603 + L2 LINE L2 2852 3115 -198 2135 77 8 0 chr1 13764277 13764537 -268429127 - AluSc SINE Alu -12 297 36 278 221 19 29 chr1 13764865 13764969 -268428695 - Charlie1 DNA MER1_type -67 2694 2592 2256 107 0 0 chr1 13764993 13765284 -268428380 - AluSx SINE Alu -21 291 1 479 269 17 0 chr1 13765288 13765407 -268428257 - L1MD3 LINE L1 -71 7924 7804 890 198 104 5 chr1 13765412 13765614 -268428050 - Charlie1 DNA MER1_type -2520 241 20 271 289 78 0 chr1 13765639 13765729 -268427935 + MIR SINE MIR 12 108 -154 516 288 135 9 chr1 13765739 13765968 -268427696 + MIR SINE MIR 5 262 0 306 171 53 0 chr1 13765973 13766049 -268427615 + MIR SINE MIR 173 252 -10 2247 82 29 0 chr1 13767050 13767329 -268426335 - AluSx SINE Alu -20 292 6 246 304 76 19 chr1 13768003 13768161 -268425503 - L2 LINE L2 -52 3261 3095 261 75 0 0 chr1 13771093 13771133 -268422531 + (CA)n Simple_repeat Simple_repeat 2 41 0 218 293 35 0 chr1 13771797 13771855 -268421809 - MIR SINE MIR -60 148 89 234 300 138 8 chr1 13773331 13773461 -268420203 + MIR SINE MIR 43 189 -73 1263 176 9 9 chr1 13775326 13775559 -268418105 - L1MC1 LINE L1 -1 6332 6100 887 237 39 93 chr1 13775576 13775881 -268417783 - L1ME4a LINE L1 -15 6106 5845 1901 125 25 50 chr1 13775881 13776201 -268417463 - AluJb SINE Alu 0 312 1 887 237 39 93 chr1 13776201 13776561 -268417103 - L1ME4a LINE L1 -276 5845 5467 1526 184 61 0 chr1 13776981 13777274 -268416390 + MER58B DNA MER1_type 31 341 0 2419 77 0 6 chr1 13778815 13779127 -268414537 - AluY SINE Alu -1 310 1 428 282 63 57 chr1 13779329 13779645 -268414019 - L1ME LINE L1 -302 5819 5502 208 289 53 0 chr1 13780248 13780324 -268413340 + MIR SINE MIR 176 255 -7 308 277 135 0 chr1 13780373 13780536 -268413128 + MIR SINE MIR 42 225 -37 405 0 0 0 chr1 13781500 13781545 -268412119 + (TG)n Simple_repeat Simple_repeat 2 46 0 1708 185 7 3 chr1 13781981 13782279 -268411385 - AluJb SINE Alu -11 301 3 2483 78 0 3 chr1 13782897 13783206 -268410458 + AluY SINE Alu 1 308 -3 734 210 84 88 chr1 13783972 13784234 -268409430 + MIR SINE MIR 2 262 0 612 268 82 39 chr1 13784246 13784477 -268409187 + MIR SINE MIR 4 244 -18 599 295 96 56 chr1 13784831 13785205 -268408459 - L2 LINE L2 -1 3312 2914 2331 94 3 3 chr1 13785205 13785502 -268408162 - AluSg SINE Alu -13 297 1 599 295 96 56 chr1 13785502 13785595 -268408069 - L2 LINE L2 -399 2914 2826 33 0 0 0 chr1 13785972 13786005 -268407659 + AT_rich Low_complexity Low_complexity 1 33 0 1781 177 0 16 chr1 13786281 13786633 -268407031 - AluJb SINE Alu 0 312 4 25 0 0 0 chr1 13787227 13787252 -268406412 + AT_rich Low_complexity Low_complexity 1 25 0 21 57 0 0 chr1 13787375 13787410 -268406254 + AT_rich Low_complexity Low_complexity 1 35 0 195 42 0 0 chr1 13787549 13787573 -268406091 + (A)n Simple_repeat Simple_repeat 1 24 0 793 196 130 27 chr1 13787575 13788278 -268405386 - L1MC4 LINE L1 -110 7885 7024 27 87 0 0 chr1 13788961 13789030 -268404634 + GC_rich Low_complexity Low_complexity 1 69 0 24 67 0 0 chr1 13789045 13789090 -268404574 + GC_rich Low_complexity Low_complexity 1 45 0 37 99 0 0 chr1 13789273 13789394 -268404270 + GC_rich Low_complexity Low_complexity 1 121 0 198 91 0 0 chr1 13790155 13790188 -268403476 + (T)n Simple_repeat Simple_repeat 1 33 0 21 0 0 0 chr1 13791305 13791326 -268402338 + AT_rich Low_complexity Low_complexity 1 21 0 222 174 0 0 chr1 13791715 13791761 -268401903 + C-rich Low_complexity Low_complexity 1 46 0 378 218 23 11 chr1 13791763 13791850 -268401814 - L2 LINE L2 0 3272 3185 283 117 67 33 chr1 13791904 13791964 -268401700 + L2 LINE L2 3250 3311 -2 21 0 0 0 chr1 13792263 13792284 -268401380 + AT_rich Low_complexity Low_complexity 1 21 0 220 268 21 120 chr1 13792560 13792702 -268400962 + MIR SINE MIR 71 198 -64 373 281 79 7 chr1 13793635 13793774 -268399890 - L2 LINE L2 -6 3307 3159 239 317 2 0 chr1 13794202 13794270 -268399394 - MIR SINE MIR -105 103 43 639 180 0 0 chr1 13795582 13795693 -268397971 - FLAM_A SINE Alu -12 130 20 2415 64 0 38 chr1 13795749 13796062 -268397602 + AluY SINE Alu 1 301 -10 342 226 59 20 chr1 13796616 13796718 -268396946 - MIR SINE MIR -76 186 81 198 0 0 0 chr1 13797558 13797580 -268396084 + (T)n Simple_repeat Simple_repeat 1 22 0 2366 82 3 13 chr1 13797941 13798245 -268395419 + AluSx SINE Alu 1 301 -11 21 0 0 0 chr1 13798942 13798963 -268394701 + AT_rich Low_complexity Low_complexity 1 21 0 418 297 87 10 chr1 13800349 13800544 -268393120 + MIR SINE MIR 21 230 -32 192 273 91 30 chr1 13801886 13801985 -268391679 - MIR SINE MIR -12 250 146 2274 97 0 3 chr1 13805244 13805544 -268388120 - AluSg SINE Alu -11 299 1 1705 149 26 46 chr1 13807083 13807385 -268386279 - AluJo SINE Alu -16 296 1 1577 165 13 53 chr1 13807474 13807777 -268385887 + AluJo SINE Alu 2 292 -20 2484 58 0 19 chr1 13807854 13808162 -268385502 - AluY SINE Alu -9 302 1 2291 100 0 13 chr1 13808162 13808463 -268385201 - AluSq SINE Alu -16 297 1 236 357 0 10 chr1 13808463 13808561 -268385103 + MIR SINE MIR 48 144 -64 944 227 23 9 chr1 13809630 13809846 -268383818 + MER20 DNA MER1_type 1 219 0 2535 57 3 0 chr1 13811229 13811528 -268382136 + AluY SINE Alu 1 300 -11 209 139 23 0 chr1 13812794 13812837 -268380827 + (TGAA)n Simple_repeat Simple_repeat 2 45 0 1726 172 10 10 chr1 13813209 13813505 -268380159 + AluJo SINE Alu 1 296 -16 418 279 30 24 chr1 13813566 13813731 -268379933 + L1ME3A LINE L1 5991 6156 -14 2525 41 30 3 chr1 13814474 13814769 -268378895 + AluY SINE Alu 1 303 -8 2066 286 120 29 chr1 13816206 13817502 -268376162 + L2 LINE L2 1650 3061 -252 294 277 69 0 chr1 13817913 13818014 -268375650 + L2 LINE L2 3201 3308 -5 261 233 0 0 chr1 13818372 13818462 -268375202 + GA-rich Low_complexity Low_complexity 1 90 0 342 171 0 0 chr1 13820727 13820797 -268372867 + CT-rich Low_complexity Low_complexity 3 72 0 2512 66 0 7 chr1 13825611 13825915 -268367749 - AluY SINE Alu -7 304 3 35 0 0 0 chr1 13827410 13827445 -268366219 + AT_rich Low_complexity Low_complexity 1 35 0 230 231 0 46 chr1 13828243 13828308 -268365356 - MER116 DNA Mariner -12 68 7 260 274 20 39 chr1 13828658 13828760 -268364904 + MIR3 SINE MIR 82 181 -27 342 270 0 36 chr1 13829137 13829248 -268364416 - L2 LINE L2 -19 3294 3188 200 234 172 62 chr1 13829846 13829974 -268363690 + MER5B DNA MER1_type 18 159 -19 222 244 78 33 chr1 13830770 13830860 -268362804 - MIR SINE MIR -123 139 46 299 251 190 0 chr1 13832577 13832756 -268360908 - MIR SINE MIR -39 223 11 1029 126 181 25 chr1 13833502 13833701 -268359963 + MER30 DNA MER1_type 1 230 0 613 262 59 39 chr1 13833992 13834278 -268359386 + L2 LINE L2 3017 3308 -5 268 300 54 46 chr1 13834281 13834411 -268359253 + MIR SINE MIR 53 183 -79 752 211 41 6 chr1 13835044 13835215 -268358449 - MIR SINE MIR -50 212 36 237 270 80 44 chr1 13835675 13835812 -268357852 + MER117 DNA MER1_type 48 189 -8 1932 171 13 0 chr1 13836253 13836552 -268357112 + AluJo SINE Alu 1 303 -9 263 250 201 25 chr1 13837500 13837620 -268356044 + MER5A DNA MER1_type 24 175 -14 2536 67 0 3 chr1 13838941 13839240 -268354424 + AluSq SINE Alu 1 298 -15 243 0 0 0 chr1 13839843 13839870 -268353794 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 613 262 144 33 chr1 13839890 13840453 -268353211 - L2 LINE L2 -32 3281 1179 206 180 20 60 chr1 13840620 13840670 -268352994 - L2 LINE L2 -23 3249 3202 226 330 39 0 chr1 13841155 13841258 -268352406 - MER103 DNA DNA -12 154 48 946 241 55 14 chr1 13841277 13841497 -268352167 + MIR SINE MIR 33 261 -1 370 297 55 0 chr1 13843076 13843204 -268350460 - L2 LINE L2 0 3272 3138 216 330 52 0 chr1 13843345 13843442 -268350222 + MIR3 SINE MIR 84 185 -23 283 316 70 51 chr1 13843785 13843943 -268349721 + MIR SINE MIR 31 191 -71 382 227 52 10 chr1 13844320 13844417 -268349247 - MER5A DNA MER1_type -83 106 6 517 299 0 0 chr1 13844448 13844582 -268349082 + MER5B DNA MER1_type 45 178 0 544 319 14 47 chr1 13844730 13844977 -268348687 + MIR SINE MIR 11 253 -9 351 362 7 7 chr1 13844996 13845137 -268348527 - MIR3 SINE MIR -50 158 18 1356 266 180 21 chr1 13845724 13846570 -268347094 + L2 LINE L2 1760 2739 -575 281 224 15 0 chr1 13846629 13846696 -268346968 + L2 LINE L2 2901 2968 -346 855 293 89 14 chr1 13847083 13847452 -268346212 - L2 LINE L2 -3 3310 2914 2270 40 98 0 chr1 13847989 13848263 -268345401 + AluY SINE Alu 1 301 -10 312 290 90 41 chr1 13848461 13848606 -268345058 - L2 LINE L2 0 3272 3121 473 253 156 0 chr1 13848703 13848857 -268344807 - MER5B DNA MER1_type 0 178 1 410 312 153 29 chr1 13848970 13849492 -268344172 - L2 LINE L2 -559 2755 2169 181 286 156 13 chr1 13849501 13849578 -268344086 + MIR SINE MIR 21 108 -154 1485 189 53 47 chr1 13849582 13849942 -268343722 - MLT1A2 LTR MaLR -12 362 1 2611 71 0 0 chr1 13850262 13850573 -268343091 - AluY SINE Alu 0 311 1 2311 95 3 0 chr1 13850682 13850977 -268342687 + AluSx SINE Alu 1 296 -16 252 294 93 60 chr1 13851372 13851790 -268341874 - L2 LINE L2 -38 3275 2844 244 293 79 65 chr1 13851888 13852103 -268341561 - L2 LINE L2 -611 2703 2486 323 316 22 7 chr1 13852321 13852460 -268341204 - L2 LINE L2 -923 2391 2251 269 252 26 122 chr1 13852683 13852798 -268340866 - MIR SINE MIR -62 146 43 265 299 46 0 chr1 13852961 13853048 -268340616 - MIR SINE MIR -116 146 56 298 285 23 46 chr1 13853301 13853431 -268340233 + MIR SINE MIR 90 216 -46 810 204 94 5 chr1 13854299 13854490 -268339174 - MER20 DNA MER1_type -10 209 2 560 264 28 7 chr1 13854704 13854848 -268338816 + MIR SINE MIR 92 238 -24 2194 94 0 18 chr1 13854875 13855191 -268338473 - AluSx SINE Alu 0 311 1 535 294 73 45 chr1 13855205 13855450 -268338214 - L2 LINE L2 -48 3224 2973 21 0 0 0 chr1 13855473 13855494 -268338170 + AT_rich Low_complexity Low_complexity 1 21 0 244 227 299 0 chr1 13856036 13856133 -268337531 - MLT1I LTR MaLR -275 134 9 957 248 66 0 chr1 13856509 13856735 -268336929 + MIR SINE MIR 22 262 0 1234 152 20 53 chr1 13856853 13857097 -268336567 + MER46A DNA MER2_type 1 236 0 1832 83 0 4 chr1 13857497 13857727 -268335937 + AluY SINE Alu 1 229 -82 2367 79 3 28 chr1 13858147 13858464 -268335200 - AluSc SINE Alu 0 309 1 269 264 104 32 chr1 13858694 13858819 -268334845 - MIR3 SINE MIR -22 186 53 34 0 0 0 chr1 13859322 13859356 -268334308 + AT_rich Low_complexity Low_complexity 1 34 0 1781 179 18 34 chr1 13859370 13859750 -268333914 - MLT1A2 LTR MaLR 0 374 1 234 254 254 63 chr1 13859767 13859909 -268333755 - MIR3 SINE MIR -7 201 33 676 254 0 30 chr1 13860896 13861065 -268332599 + MIR SINE MIR 99 262 0 215 226 0 19 chr1 13861086 13861139 -268332525 + (TAG)n Simple_repeat Simple_repeat 1 52 0 2030 104 11 24 chr1 13861211 13861546 -268332118 - AluSx SINE Alu 0 331 1 468 239 44 61 chr1 13861656 13861836 -268331828 + MIR SINE MIR 20 196 -66 516 292 14 0 chr1 13861842 13861986 -268331678 + L1ME LINE L1 5557 5702 -468 1150 264 86 59 chr1 13861994 13862166 -268331498 + L1ME3A LINE L1 5606 5772 -398 2508 69 10 0 chr1 13862166 13862471 -268331193 - AluY SINE Alu -3 308 1 1150 264 86 59 chr1 13862471 13862843 -268330821 + L1ME3A LINE L1 5772 6165 -5 195 129 0 0 chr1 13863046 13863077 -268330587 + (CGTG)n Simple_repeat Simple_repeat 1 31 0 3188 199 32 28 chr1 13865098 13865212 -268328452 - L1MB8 LINE L1 0 6178 6066 2588 47 3 0 chr1 13865212 13865509 -268328155 - AluY SINE Alu -13 298 1 3188 199 32 28 chr1 13865509 13866121 -268327543 - L1MB8 LINE L1 -112 6066 5449 1849 162 180 34 chr1 13866382 13866415 -268327249 - MLT2B1 LTR ERVL -7 513 486 198 118 0 0 chr1 13866415 13866449 -268327215 + (TA)n Simple_repeat Simple_repeat 2 35 0 1849 162 180 34 chr1 13866449 13866860 -268326804 - MLT2B1 LTR ERVL -34 486 4 223 184 0 41 chr1 13867123 13867172 -268326492 - L2 LINE L2 -196 3076 3030 389 313 121 12 chr1 13867515 13867744 -268325920 - MIR SINE MIR -9 253 3 293 258 132 28 chr1 13867920 13868073 -268325591 + MIR SINE MIR 36 199 -58 234 282 99 63 chr1 13868090 13868232 -268325432 + MER5A DNA MER1_type 40 186 -3 298 330 0 0 chr1 13869451 13869542 -268324122 + MER96 DNA MER1_type? 85 175 0 521 319 142 22 chr1 13869587 13870053 -268323611 + L2 LINE L2 2708 3240 -32 658 201 39 22 chr1 13870313 13870492 -268323172 - MER53 DNA DNA -7 182 1 2438 87 3 0 chr1 13871335 13871635 -268322029 - AluSq SINE Alu -12 301 1 620 239 84 7 chr1 13871690 13871845 -268321819 + MIR SINE MIR 61 227 -35 227 284 57 34 chr1 13872136 13872224 -268321440 - MIR SINE MIR -89 173 84 222 261 62 15 chr1 13873613 13873678 -268319986 + L3 LINE CR1 1299 1366 -211 2350 100 0 10 chr1 13873694 13874005 -268319659 - AluSx SINE Alu -4 308 1 1704 121 161 75 chr1 13874316 13874688 -268318976 - MER4A LTR ERV1 0 664 261 571 162 0 10 chr1 13874688 13874787 -268318877 - MER4A LTR ERV1 -566 98 1 1207 211 13 55 chr1 13875615 13875923 -268317741 - MLT1B LTR MaLR -88 302 8 505 247 62 19 chr1 13876098 13876260 -268317404 - MLT1I LTR MaLR -1 408 240 246 309 132 23 chr1 13876272 13876492 -268317172 - L1ME3A LINE L1 0 6170 5927 312 156 0 0 chr1 13876492 13876537 -268317127 - L1MD2 LINE L1 -17 6342 6298 3417 189 85 51 chr1 13876573 13876874 -268316790 - L1MD1 LINE L1 -38 6204 5915 1947 145 0 44 chr1 13876874 13877191 -268316473 - AluJo SINE Alu -9 303 1 3417 189 85 51 chr1 13877191 13878269 -268315395 - L1MD1 LINE L1 -327 5915 4778 844 76 0 23 chr1 13878354 13878486 -268315178 + (TTCC)n Simple_repeat Simple_repeat 4 132 0 2036 140 0 4 chr1 13878486 13878764 -268314900 - AluSx SINE Alu -35 277 1 2508 42 0 0 chr1 13878801 13879113 -268314551 + AluY SINE Alu 1 312 0 4145 139 2 5 chr1 13879113 13879751 -268313913 - L1PA15 LINE L1 -16 6149 5514 334 273 82 31 chr1 13879892 13880086 -268313578 - MIR SINE MIR -1 261 58 3540 39 0 5 chr1 13880320 13880790 -268312874 + L1PA3 LINE L1 5727 6155 0 8398 170 25 5 chr1 13880795 13882652 -268311012 - L1P4 LINE L1 -636 6967 5082 1477 151 38 24 chr1 13882674 13882966 -268310698 + THE1C LTR MaLR 80 375 0 343 159 0 29 chr1 13883005 13883074 -268310590 - THE1C LTR MaLR -308 67 1 3988 209 18 5 chr1 13883074 13884119 -268309545 - L1P4 LINE L1 -2531 5053 3134 2113 186 61 19 chr1 13884119 13884591 -268309073 - LTR22B LTR ERVK 0 492 1 480 345 17 0 chr1 13884604 13884842 -268308822 - L1P4 LINE L1 -7332 249 8 4523 222 74 36 chr1 13884865 13885297 -268308367 - L1MDa LINE L1 -1430 5110 4696 2286 95 0 10 chr1 13885297 13885592 -268308072 - AluSg SINE Alu -18 292 1 4523 222 74 36 chr1 13885592 13887248 -268306416 - L1MDa LINE L1 -1844 4696 3014 1984 141 24 29 chr1 13887248 13887625 -268306039 + THE1C LTR MaLR 1 375 0 10240 126 34 5 chr1 13887625 13889161 -268304503 + THE1C-int LTR MaLR 1 1580 0 384 109 0 0 chr1 13889161 13889216 -268304448 + THE1C LTR MaLR 1 55 -373 2435 135 28 6 chr1 13889216 13889572 -268304092 + THE1B LTR MaLR 1 364 0 9602 108 2 2 chr1 13889572 13890855 -268302809 + THE1B-int LTR MaLR 1 1284 -296 561 182 48 53 chr1 13890855 13891029 -268302635 - MER6 DNA MER2_type -27 838 -64 939 266 48 25 chr1 13891033 13891469 -268302195 + Charlie7 DNA MER1_type 1980 2425 -187 2216 109 3 0 chr1 13891498 13891809 -268301855 + THE1B-int LTR MaLR 1269 1580 0 2157 134 39 22 chr1 13891809 13892167 -268301497 + THE1B LTR MaLR 1 364 0 1794 149 21 24 chr1 13892167 13892495 -268301169 + THE1C LTR MaLR 49 375 0 526 242 28 11 chr1 13892499 13892681 -268300983 - L1MDa LINE L1 -3529 3011 2827 3167 177 78 35 chr1 13892696 13893202 -268300462 - L1MDa LINE L1 -3947 2593 2037 2102 198 33 54 chr1 13893202 13893718 -268299946 - MLT1D LTR MaLR 0 505 1 3167 177 78 35 chr1 13893718 13894023 -268299641 - L1MDa LINE L1 -4503 2037 1747 638 173 80 49 chr1 13894004 13894166 -268299498 - L1MC5 LINE L1 -1127 6834 6668 * 6612 176 7 16 chr1 13894209 13894487 -268299177 - L1PA14 LINE L1 -3 6158 5879 1664 169 67 25 chr1 13894487 13894847 -268298817 + THE1C LTR MaLR 1 375 0 10020 121 16 36 chr1 13894849 13896459 -268297205 + THE1C-int LTR MaLR 3 1580 0 1601 139 119 32 chr1 13896459 13896804 -268296860 + THE1C LTR MaLR 1 375 0 6612 176 7 16 chr1 13896804 13898595 -268295069 - L1PA14 LINE L1 -281 5880 4106 521 363 29 12 chr1 13898621 13898861 -268294803 - MLT1I LTR MaLR -165 244 1 382 308 101 20 chr1 13898967 13899165 -268294499 + MIR SINE MIR 32 245 -17 315 223 121 48 chr1 13899284 13899450 -268294214 - HAL1 LINE L1 -13 2494 2317 610 184 0 0 chr1 13899572 13899670 -268293994 - MER2 DNA MER2_type -246 99 2 1236 280 138 52 chr1 13899717 13900745 -268292919 - HAL1 LINE L1 -312 2195 1064 2257 117 0 3 chr1 13900745 13901045 -268292619 - AluSq SINE Alu -14 299 1 1236 280 138 52 chr1 13901045 13901126 -268292538 - HAL1 LINE L1 -1443 1064 991 442 244 208 5 chr1 13901209 13901406 -268292258 - MIR SINE MIR -15 247 11 281 251 69 86 chr1 13901421 13901596 -268292068 - HAL1 LINE L1 -1637 870 699 371 311 87 71 chr1 13901670 13902156 -268291508 - HAL1 LINE L1 -1939 568 70 2262 107 3 0 chr1 13902156 13902447 -268291217 + AluSx SINE Alu 3 294 -18 371 311 87 71 chr1 13902447 13902510 -268291154 - HAL1 LINE L1 -2437 70 10 1916 148 21 10 chr1 13902514 13902805 -268290859 - AluJb SINE Alu -18 294 1 306 304 20 29 chr1 13903473 13903575 -268290089 + LTR67 LTR ERVL 113 213 -344 321 274 52 22 chr1 13903703 13903838 -268289826 - LTR67 LTR ERVL 0 557 419 1560 101 0 0 chr1 13903980 13904178 -268289486 - AluY SINE Alu -9 302 105 488 179 38 0 chr1 13905073 13905179 -268288485 + L1MB8 LINE L1 6068 6177 -1 2351 104 0 0 chr1 13905189 13905496 -268288168 + AluSc SINE Alu 1 307 -2 1631 199 51 74 chr1 13906669 13907142 -268286522 - MLT1C LTR MaLR 0 467 6 352 315 139 32 chr1 13907150 13907945 -268285719 + L2 LINE L2 2382 3275 -38 394 265 147 55 chr1 13908550 13908931 -268284733 - LTR16A LTR ERVL -10 440 25 693 0 0 0 chr1 13909696 13909773 -268283891 + (TTTC)n Simple_repeat Simple_repeat 2 78 0 6266 85 20 2 chr1 13909778 13910637 -268283027 - L1PA13 LINE L1 -19 6144 5271 1492 181 48 16 chr1 13910990 13911042 -268282622 + MER58B DNA MER1_type 27 76 -2344 1599 94 4 13 chr1 13911042 13911276 -268282388 - L1PA14 LINE L1 0 6161 5930 1492 181 48 16 chr1 13911276 13911533 -268282131 + MER58B DNA MER1_type 76 341 0 244 313 52 21 chr1 13911958 13912054 -268281610 - L2 LINE L2 -8 3264 3166 226 235 0 20 chr1 13912087 13912138 -268281526 - LTR67 LTR ERVL -8 549 500 473 296 6 29 chr1 13912516 13912688 -268280976 - L2 LINE L2 -181 3091 2924 277 197 61 0 chr1 13913856 13913922 -268279742 + MIR3 SINE MIR 91 160 -48 1320 222 76 22 chr1 13913925 13914295 -268279369 - MLT1B LTR MaLR 0 390 1 236 254 0 17 chr1 13914511 13914570 -268279094 + MLT1L LTR MaLR 1 58 -557 428 152 13 25 chr1 13914581 13914660 -268279004 + ORSL DNA AcHobo 9 86 -189 363 231 0 13 chr1 13914697 13914775 -268278889 + ORSL DNA AcHobo 192 268 -7 236 369 10 10 chr1 13914901 13915004 -268278660 + MLT1L LTR MaLR 218 320 -295 2041 178 36 64 chr1 13915161 13915386 -268278278 - MLT1C LTR MaLR -8 459 252 2541 68 0 0 chr1 13915386 13915695 -268277969 + AluY SINE Alu 1 309 -2 2041 178 36 64 chr1 13915695 13915941 -268277723 - MLT1C LTR MaLR -215 252 1 1281 117 0 0 chr1 13915980 13916159 -268277505 - FRAM SINE Alu -5 171 1 1832 154 0 20 chr1 13916316 13916484 -268277180 - AluJb SINE Alu -13 299 138 2295 113 3 3 chr1 13916484 13916795 -268276869 - AluSq SINE Alu -2 311 1 1832 154 0 20 chr1 13916795 13916931 -268276733 - AluJb SINE Alu -174 138 1 302 217 29 0 chr1 13917011 13917080 -268276584 - L2 LINE L2 -305 2967 2897 1143 215 139 3 chr1 13917107 13917395 -268276269 - MLT1D LTR MaLR -178 327 1 526 178 25 76 chr1 13917556 13917713 -268275951 + MER5A DNA MER1_type 1 149 -40 487 186 186 21 chr1 13917719 13917864 -268275800 - MER96B DNA MER1_type? -237 180 12 238 329 20 27 chr1 13917928 13918074 -268275590 - L2 LINE L2 -196 3076 2932 219 150 0 0 chr1 13918131 13918171 -268275493 - L2 LINE L2 -4 3309 3270 497 220 102 0 chr1 13918561 13918679 -268274985 - MER94 DNA DNA -4 130 1 2578 62 0 3 chr1 13919397 13919703 -268273961 + AluY SINE Alu 1 305 -6 1719 259 103 47 chr1 13919710 13920273 -268273391 - L1ME2 LINE L1 -241 5906 5376 1972 149 0 0 chr1 13920273 13920589 -268273075 - AluJb SINE Alu 0 320 5 1719 259 103 47 chr1 13920589 13920895 -268272769 - L1ME2 LINE L1 -771 5376 5089 2285 92 3 3 chr1 13920895 13921190 -268272474 + AluSx SINE Alu 3 297 -15 1719 259 103 47 chr1 13921190 13922160 -268271504 - L1ME2 LINE L1 -1058 5089 3951 977 264 54 70 chr1 13922411 13923371 -268270293 - L1ME2 LINE L1 -3720 2409 1263 2295 223 22 50 chr1 13923394 13923937 -268269727 - MLT2B3 LTR ERVL 0 554 27 300 293 73 6 chr1 13924318 13924482 -268269182 - L1ME2 LINE L1 -4969 1150 976 631 123 16 8 chr1 13924598 13924720 -268268944 + CT-rich Low_complexity Low_complexity 1 123 0 1853 168 7 3 chr1 13924720 13925023 -268268641 - AluJb SINE Alu -8 304 1 4719 221 104 16 chr1 13925149 13925924 -268267740 - L1MC4 LINE L1 -155 7887 7182 357 24 0 0 chr1 13925924 13925966 -268267698 + (TCCA)n Simple_repeat Simple_repeat 4 45 0 4719 221 104 16 chr1 13925966 13926502 -268267162 - L1MC4 LINE L1 -860 7182 6460 21 36 0 0 chr1 13926831 13926859 -268266805 + AT_rich Low_complexity Low_complexity 1 28 0 3136 202 14 3 chr1 13927136 13927785 -268265879 + L1MB7 LINE L1 5519 6174 -10 230 299 41 10 chr1 13927956 13928053 -268265611 + MIR SINE MIR 55 154 -108 3232 72 65 0 chr1 13928413 13928843 -268264821 - LTR22A LTR ERVK 0 458 1 237 333 132 8 chr1 13929458 13929587 -268264077 - MER102a DNA MER1_type -33 297 153 1622 226 8 16 chr1 13929773 13930140 -268263524 - MLT1A1 LTR MaLR -1 364 1 450 290 66 56 chr1 13930474 13930865 -268262799 + L1MC/D LINE L1 5272 5660 -631 372 255 20 10 chr1 13930885 13930983 -268262681 - MER94 DNA DNA -35 99 1 2276 99 0 40 chr1 13931011 13931334 -268262330 - AluSx SINE Alu 0 312 3 23 54 0 0 chr1 13932781 13932818 -268260846 + GC_rich Low_complexity Low_complexity 1 37 0 218 311 56 67 chr1 13934418 13934598 -268259066 + MIR3 SINE MIR 20 197 -11 680 223 71 16 chr1 13934684 13934868 -268258796 + MIR SINE MIR 13 206 -56 839 151 0 0 chr1 13935771 13935897 -268257767 - FRAM SINE Alu -12 164 39 928 228 0 36 chr1 13935917 13936110 -268257554 - MER58A DNA MER1_type 0 224 39 1714 161 0 8 chr1 13936110 13936371 -268257293 - AluJo SINE Alu -53 259 1 1143 222 0 30 chr1 13936846 13937076 -268256588 + MER58A DNA MER1_type 1 223 -1 231 269 0 19 chr1 13937453 13937505 -268256159 - MIR SINE MIR -190 72 22 472 302 92 15 chr1 13938983 13939206 -268254458 - MIR SINE MIR -12 250 15 2168 79 0 0 chr1 13939424 13939689 -268253975 - AluSx SINE Alu -13 299 35 885 237 18 9 chr1 13940428 13940652 -268253012 + MIR SINE MIR 9 234 -28 201 94 0 0 chr1 13940822 13940854 -268252810 + (A)n Simple_repeat Simple_repeat 1 32 0 289 257 114 0 chr1 13940970 13941075 -268252589 - MER94 DNA DNA -16 118 2 322 309 68 25 chr1 13941263 13941425 -268252239 - MER102a DNA MER1_type -161 169 1 1632 138 64 22 chr1 13942301 13942613 -268251051 + L1MA4 LINE L1 5970 6294 -6 906 279 137 64 chr1 13944274 13945559 -268248105 - L1MEd LINE L1 -4742 1568 149 867 185 52 107 chr1 13945576 13945995 -268247669 - MLT1D LTR MaLR 0 505 1 2309 149 37 42 chr1 13949814 13950006 -268243658 + MSTA LTR MaLR 1 192 -236 2215 113 0 3 chr1 13950006 13950297 -268243367 + AluSc SINE Alu 1 290 -19 2309 149 37 42 chr1 13950297 13950534 -268243130 + MSTA LTR MaLR 192 428 0 2064 153 72 48 chr1 13950592 13950821 -268242843 - MSTA LTR MaLR 0 428 183 2171 130 0 0 chr1 13950821 13951128 -268242536 - AluSx SINE Alu -5 307 1 2064 153 72 48 chr1 13951128 13951316 -268242348 - MSTA LTR MaLR -245 183 1 2024 133 28 0 chr1 13952390 13952675 -268240989 - AluSx SINE Alu -19 293 1 347 189 63 11 chr1 13953509 13953604 -268240060 - MER5A DNA MER1_type -1 188 89 782 168 138 6 chr1 13953679 13953846 -268239818 + MER5A DNA MER1_type 1 189 0 362 246 161 0 chr1 13954062 13954192 -268239472 + MIR SINE MIR 80 230 -32 331 221 54 9 chr1 13954250 13954441 -268239223 + MLT1E LTR MaLR 83 368 -286 261 61 0 0 chr1 13954440 13954473 -268239191 + Tigger1 DNA MER2_type 1149 1181 -1237 * 463 157 0 0 chr1 13954476 13954546 -268239118 + AluJ/FLAM SINE Alu 2 71 -241 1232 238 57 3 chr1 13954555 13954854 -268238810 + MLT1E LTR MaLR 279 593 0 234 316 25 0 chr1 13954860 13954939 -268238725 + (TATATG)n Simple_repeat Simple_repeat 3 83 0 963 193 71 42 chr1 13955042 13955281 -268238383 - ORSL DNA AcHobo -29 246 1 212 321 0 0 chr1 13956849 13956905 -268236759 + (TG)n Simple_repeat Simple_repeat 2 57 0 9384 99 31 12 chr1 13956949 13957293 -268236371 + Tigger1 DNA MER2_type 838 1174 -1244 1781 166 10 16 chr1 13957293 13957607 -268236057 + AluJb SINE Alu 1 312 0 9384 99 31 12 chr1 13957607 13958607 -268235057 + Tigger1 DNA MER2_type 1174 2208 -210 545 186 0 0 chr1 13958607 13958704 -268234960 - FRAM SINE Alu -8 168 72 1476 227 79 42 chr1 13958866 13959385 -268234279 - L1ME3A LINE L1 -48 6122 5585 1238 237 162 30 chr1 13959388 13959794 -268233870 - L1ME3A LINE L1 -770 5376 4864 1836 112 24 0 chr1 13959794 13960043 -268233621 + AluSg SINE Alu 46 300 -10 1238 237 162 30 chr1 13960043 13960236 -268233428 - L1ME3A LINE L1 -1282 4864 4698 2783 109 104 0 chr1 13960279 13960719 -268232945 - LTR19A LTR ERV1 0 486 1 311 239 49 65 chr1 13960889 13961054 -268232610 - L1ME3A LINE L1 -1449 4697 4534 1223 212 9 0 chr1 13961054 13961276 -268232388 - MER58A DNA MER1_type 0 224 1 311 239 49 65 chr1 13961276 13961294 -268232370 - L1ME3A LINE L1 -1612 4534 4517 2357 81 0 20 chr1 13961412 13961710 -268231954 - AluY SINE Alu -19 292 1 2583 148 20 26 chr1 13962819 13963071 -268230593 - Tigger2 DNA MER2_type -1 2717 2468 2682 43 0 0 chr1 13963071 13963372 -268230292 + AluY SINE Alu 1 301 -10 2583 148 20 26 chr1 13963372 13963572 -268230092 - Tigger2 DNA MER2_type -250 2468 2268 346 194 15 0 chr1 13963557 13963624 -268230040 - Tigger2 DNA MER2_type -2649 69 2 * 290 308 6 44 chr1 13963670 13963852 -268229812 - L2 LINE L2 -800 2514 2340 27 0 0 0 chr1 13964058 13964085 -268229579 + AT_rich Low_complexity Low_complexity 1 27 0 655 121 0 10 chr1 13964241 13964340 -268229324 + MER4A LTR ERV1 1 98 -566 1742 121 5 80 chr1 13964340 13964711 -268228953 + MER4A LTR ERV1 263 664 0 1534 176 13 54 chr1 13964711 13965095 -268228569 - L1MB8 LINE L1 -32 6146 5773 553 297 178 25 chr1 13965196 13965799 -268227865 - L2 LINE L2 -253 3060 2369 198 260 0 60 chr1 13965900 13965950 -268227714 + L2 LINE L2 3026 3072 -200 183 262 0 0 chr1 13966950 13966992 -268226672 + L3 LINE CR1 974 1015 -562 564 333 80 21 chr1 13967373 13967796 -268225868 - L2 LINE L2 0 3313 2866 219 178 0 22 chr1 13968066 13968111 -268225553 + (ATG)n Simple_repeat Simple_repeat 3 46 0 277 156 0 0 chr1 13968217 13968262 -268225402 - MIR SINE MIR -83 125 81 1114 126 0 13 chr1 13968827 13968986 -268224678 - FRAM SINE Alu -7 169 13 728 281 25 17 chr1 13969571 13969806 -268223858 - MIR SINE MIR -13 249 13 258 227 136 83 chr1 13970310 13970442 -268223222 - L2 LINE L2 -23 3290 3152 312 137 0 0 chr1 13971227 13971278 -268222386 + (TG)n Simple_repeat Simple_repeat 1 51 0 1931 132 0 64 chr1 13971626 13971937 -268221727 - AluSx SINE Alu -21 291 1 565 247 52 65 chr1 13971998 13972038 -268221626 - MIR SINE MIR -23 239 200 2829 10 0 0 chr1 13972038 13972339 -268221325 - AluYa5 SINE Alu -10 301 1 565 247 52 65 chr1 13972339 13972529 -268221135 - MIR SINE MIR -62 200 12 1180 208 7 26 chr1 13972696 13972965 -268220699 - L1MD3 LINE L1 0 7995 7732 2195 92 3 14 chr1 13972990 13973282 -268220382 + AluSp SINE Alu 1 289 -24 381 325 0 0 chr1 13973325 13973448 -268220216 - L2 LINE L2 -1 3312 3190 405 243 223 15 chr1 13973477 13973679 -268219985 - MIR SINE MIR 0 262 19 2323 87 0 0 chr1 13974734 13975050 -268218614 + AluSq SINE Alu 1 316 0 569 246 120 5 chr1 13975064 13975255 -268218409 - MIR SINE MIR -48 214 2 257 207 35 0 chr1 13975563 13975621 -268218043 + MIR SINE MIR 87 146 -62 351 0 0 0 chr1 13975642 13975681 -268217983 + (TG)n Simple_repeat Simple_repeat 2 40 0 3052 124 53 32 chr1 13975840 13975876 -268217788 - L1PB4 LINE L1 -2 6154 6120 2238 102 0 23 chr1 13975876 13976181 -268217483 - AluSp SINE Alu -15 298 1 3052 124 53 32 chr1 13976181 13976670 -268216994 - L1PB4 LINE L1 -36 6120 5618 5947 172 10 29 chr1 13976670 13976816 -268216848 - L1P5 LINE L1 -683 5473 5326 2287 114 7 3 chr1 13976816 13977123 -268216541 - AluSg SINE Alu -2 308 1 5947 172 10 29 chr1 13977123 13978340 -268215324 - L1P5 LINE L1 -830 5326 4122 1025 149 0 0 chr1 13978342 13978496 -268215168 + MST-int LTR MaLR 963 1116 -535 * 5572 170 50 3 chr1 13978461 13979436 -268214228 - MSTA-int LTR MaLR -615 1036 16 2311 176 31 2 chr1 13979436 13979852 -268213812 - MSTA LTR MaLR 0 428 1 2191 186 4 15 chr1 13979852 13980309 -268213355 - L1 LINE L1 -2434 3712 3261 260 231 157 8 chr1 13980352 13980473 -268213191 + L1MDa LINE L1 1278 1416 -5124 2085 118 20 3 chr1 13980692 13981007 -268212657 + AluSx SINE Alu 1 312 0 180 216 0 0 chr1 13981106 13981143 -268212521 - L2 LINE L2 -9 3304 3268 2965 10 0 0 chr1 13982038 13982352 -268211312 + AluYb8 SINE Alu 1 314 -4 728 281 122 47 chr1 13982508 13983104 -268210560 + L1MEd LINE L1 817 1520 -4693 849 113 0 71 chr1 13983104 13983245 -268210419 + FLAM_C SINE Alu 3 133 0 728 281 122 47 chr1 13983245 13983474 -268210190 + L1MEd LINE L1 1520 1731 -4482 23 0 0 0 chr1 13983495 13983518 -268210146 + AT_rich Low_complexity Low_complexity 1 23 0 3528 207 40 13 chr1 13983532 13984323 -268209341 + L1MB8 LINE L1 5360 6172 -6 674 284 58 23 chr1 13984320 13984939 -268208725 + L1MEd LINE L1 1813 2422 -3707 * 2233 100 3 3 chr1 13984971 13985270 -268208394 + AluSx SINE Alu 1 299 -13 288 0 0 0 chr1 13985459 13985491 -268208173 + (TG)n Simple_repeat Simple_repeat 1 32 0 234 0 0 0 chr1 13985490 13985516 -268208148 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 265 296 80 37 chr1 13985831 13985993 -268207671 - L3b LINE CR1 -95 1488 1320 408 259 104 0 chr1 13986074 13986209 -268207455 + MIR SINE MIR 1 149 -113 1418 201 113 36 chr1 13986629 13986850 -268206814 - MLT1D LTR MaLR -17 488 285 1231 126 126 166 chr1 13986850 13987296 -268206368 - MSTA LTR MaLR 0 428 1 1418 201 113 36 chr1 13987296 13987384 -268206280 - MLT1D LTR MaLR -220 285 205 2215 117 27 78 chr1 13987384 13987795 -268205869 - MLT1B LTR MaLR 0 390 1 1418 201 113 36 chr1 13987795 13987901 -268205763 - MLT1D LTR MaLR -300 205 40 2075 116 71 14 chr1 13987996 13988349 -268205315 + THE1C LTR MaLR 3 375 0 368 265 26 8 chr1 13988639 13988756 -268204908 - MIR SINE MIR -116 146 28 238 279 127 57 chr1 13989364 13989593 -268204071 - MIR SINE MIR -1 261 17 520 241 23 8 chr1 13990148 13990281 -268203383 + L2 LINE L2 3175 3309 -4 374 290 41 21 chr1 13990485 13990630 -268203034 - LTR33 LTR ERVL -309 212 65 418 268 237 11 chr1 13991004 13991194 -268202470 + MIR SINE MIR 2 234 -28 404 309 16 0 chr1 13991196 13991319 -268202345 - MER94 DNA DNA -3 131 7 432 0 0 0 chr1 13991403 13991451 -268202213 + (TAA)n Simple_repeat Simple_repeat 3 50 0 405 0 0 0 chr1 13992114 13992159 -268201505 + (TAA)n Simple_repeat Simple_repeat 3 47 0 353 264 76 21 chr1 13992574 13992718 -268200946 + MIR3 SINE MIR 57 208 0 373 239 39 39 chr1 13992720 13992850 -268200814 + L3 LINE CR1 1338 1467 -110 552 269 93 56 chr1 13993196 13993520 -268200144 - HAL1 LINE L1 -856 1651 1316 572 191 8 24 chr1 13993607 13993733 -268199931 + Ricksha DNA DNA 9 132 -3114 * 1069 167 21 0 chr1 13993715 13993901 -268199763 + Ricksha DNA DNA 1707 1896 -1350 683 125 0 0 chr1 13993904 13994048 -268199616 + AluSg/x SINE Alu 201 344 0 5548 148 40 32 chr1 13994051 13995370 -268198294 + Ricksha DNA DNA 1889 3254 -10 216 97 0 0 chr1 13996072 13996103 -268197561 + (T)n Simple_repeat Simple_repeat 1 31 0 2021 182 45 26 chr1 13997249 13997673 -268195991 - MSTB1 LTR MaLR 0 432 1 370 349 30 0 chr1 13997836 13997968 -268195696 - L2 LINE L2 0 3272 3137 2526 52 0 19 chr1 13998068 13998376 -268195288 + AluY SINE Alu 1 302 -9 352 274 65 48 chr1 13998387 13998635 -268195029 - L2 LINE L2 -192 3080 2829 905 200 104 18 chr1 13998920 13999140 -268194524 + MLT1A1 LTR MaLR 127 365 0 413 341 81 30 chr1 13999336 13999670 -268193994 + L2 LINE L2 2904 3254 -18 739 237 82 14 chr1 13999931 14000150 -268193514 - MIR SINE MIR 0 262 29 515 200 9 9 chr1 14000742 14000847 -268192817 - L2 LINE L2 0 3313 3209 203 250 0 0 chr1 14001066 14001110 -268192554 + (CA)n Simple_repeat Simple_repeat 2 45 0 209 278 179 20 chr1 14001110 14001261 -268192403 - L2 LINE L2 -91 3222 3048 252 252 47 9 chr1 14001704 14001811 -268191853 + L2 LINE L2 2915 3025 -247 272 279 101 17 chr1 14001895 14002074 -268191590 - L2 LINE L2 -303 3010 2817 226 261 15 85 chr1 14002254 14002338 -268191326 - MIR SINE MIR -35 227 154 2252 114 0 0 chr1 14002338 14002637 -268191027 - AluSx SINE Alu -13 299 1 226 261 15 85 chr1 14002637 14002682 -268190982 - MIR SINE MIR -108 154 107 405 0 0 0 chr1 14003539 14003584 -268190080 + (TG)n Simple_repeat Simple_repeat 2 46 0 658 296 49 16 chr1 14003598 14003845 -268189819 + MIR SINE MIR 1 255 -7 779 233 67 84 chr1 14003890 14004141 -268189523 - L2 LINE L2 -15 3298 3044 1424 208 185 50 chr1 14004141 14004622 -268189042 - MLT1H LTR MaLR -3 546 1 779 233 67 84 chr1 14004622 14005062 -268188602 - L2 LINE L2 -269 3044 2622 188 379 129 0 chr1 14005329 14005453 -268188211 + L2 LINE L2 3098 3237 -35 204 83 0 100 chr1 14005939 14005999 -268187665 + (TCCC)n Simple_repeat Simple_repeat 3 56 0 219 359 0 0 chr1 14006285 14006377 -268187287 - MIR SINE MIR -124 138 47 1179 196 25 49 chr1 14006399 14006725 -268186939 + MER33 DNA MER1_type 7 324 0 309 281 114 0 chr1 14006897 14007011 -268186653 - L1MD3 LINE L1 0 7995 7869 189 328 94 12 chr1 14007261 14007432 -268186232 + MIR SINE MIR 1 185 -77 880 282 215 15 chr1 14008262 14008787 -268184877 + L2 LINE L2 1738 2367 -947 483 266 23 8 chr1 14008826 14008954 -268184710 - L2 LINE L2 0 3313 3184 1873 160 21 59 chr1 14008954 14009329 -268184335 + MLT1C LTR MaLR 1 361 -106 410 339 76 0 chr1 14009329 14009500 -268184164 + L2 LINE L2 2850 3033 -280 299 315 83 0 chr1 14009672 14009780 -268183884 - MIR SINE MIR -75 187 71 489 318 55 18 chr1 14010069 14010286 -268183378 - MIR SINE MIR -1 261 37 216 293 81 40 chr1 14010344 14010443 -268183221 + L3b LINE CR1 1472 1574 -9 513 254 200 66 chr1 14010747 14011231 -268182433 - MLT1H LTR MaLR 0 549 1 198 0 0 0 chr1 14011383 14011405 -268182259 + (TTG)n Simple_repeat Simple_repeat 3 24 0 2551 142 36 5 chr1 14011432 14011847 -268181817 + MSTA LTR MaLR 1 428 0 662 132 0 0 chr1 14012041 14012147 -268181517 - AluY SINE Alu 0 311 206 326 275 106 14 chr1 14012486 14012628 -268181036 + MIR3 SINE MIR 3 157 -51 237 256 0 0 chr1 14012821 14012903 -268180761 + CT-rich Low_complexity Low_complexity 2 83 0 276 278 0 46 chr1 14012926 14013034 -268180630 - MIR SINE MIR -10 252 150 954 285 26 3 chr1 14013041 14013515 -268180149 + LTR33 LTR ERVL 1 512 -9 244 59 0 0 chr1 14013515 14013549 -268180115 - MIR SINE MIR -110 152 119 184 300 20 0 chr1 14013538 14013588 -268180076 + MIR SINE MIR 42 92 -116 * 201 175 25 0 chr1 14013596 14013636 -268180028 + L2 LINE L2 3012 3052 -261 2124 205 44 5 chr1 14013658 14014087 -268179577 - MER68 LTR ERV1 0 562 117 1266 220 130 71 chr1 14014139 14014616 -268179048 + MLT1D LTR MaLR 1 505 0 233 191 22 112 chr1 14014616 14014702 -268178962 - MER68 LTR ERV1 -482 80 3 338 306 27 0 chr1 14014793 14014904 -268178760 - L2 LINE L2 -5 3308 3195 188 343 15 0 chr1 14015355 14015422 -268178242 + L2 LINE L2 3246 3313 0 225 0 0 0 chr1 14015584 14015609 -268178055 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 274 271 75 15 chr1 14017049 14017182 -268176482 + MIR SINE MIR 57 197 -65 2372 88 0 3 chr1 14017625 14017931 -268175733 + AluY SINE Alu 1 305 -6 223 178 0 0 chr1 14018247 14018292 -268175372 + (TA)n Simple_repeat Simple_repeat 1 45 0 252 234 21 69 chr1 14018298 14018443 -268175221 + L1MEd LINE L1 1007 1144 -5061 312 274 10 107 chr1 14018486 14018608 -268175056 + L1MEd LINE L1 1148 1245 -4960 1794 166 24 0 chr1 14018608 14018897 -268174767 + AluJb SINE Alu 9 304 -8 312 274 10 107 chr1 14018897 14018971 -268174693 + L1MEd LINE L1 1245 1325 -4880 334 296 47 17 chr1 14019034 14019267 -268174397 + L1MEd LINE L1 1432 1671 -4725 2504 65 0 10 chr1 14019426 14019734 -268173930 + AluY SINE Alu 1 305 -6 1140 281 66 19 chr1 14019754 14020504 -268173160 + L1MEd LINE L1 1918 2658 -3557 600 253 51 51 chr1 14020537 14020790 -268172874 - MLT1G LTR MaLR -187 403 151 292 292 31 44 chr1 14020791 14021003 -268172661 + MER106B DNA MER1_type 1 211 -25 88 67 0 0 chr1 14021006 14021171 -268172493 + AT_rich Low_complexity Low_complexity 1 165 0 604 227 85 0 chr1 14021174 14021315 -268172349 - MLT1G LTR MaLR -431 159 7 187 318 30 0 chr1 14021693 14021759 -268171905 - MIR SINE MIR -58 150 83 1551 111 4 4 chr1 14022016 14022242 -268171422 - pTR5 LTR ERV1 -2041 397 172 301 224 41 31 chr1 14022245 14022343 -268171321 - LTR30 LTR ERV1 -80 642 544 5481 129 38 71 chr1 14022343 14023508 -268170156 - pTR5 LTR ERV1 -413 2025 742 2439 76 3 0 chr1 14023786 14024089 -268169575 - AluY SINE Alu -7 304 1 569 264 89 29 chr1 14024183 14024429 -268169235 + L1ME LINE L1 5522 5782 -339 204 296 111 0 chr1 14024470 14024551 -268169113 + L2 LINE L2 3171 3260 -12 569 183 0 9 chr1 14024585 14024700 -268168964 - L1MB8 LINE L1 -21 6157 6044 359 87 0 0 chr1 14024833 14024879 -268168785 - MLT2B2 LTR ERVL 0 515 470 832 0 0 48 chr1 14024982 14025087 -268168577 - L1PA3 LINE L1 0 6155 6056 2839 3 0 0 chr1 14025087 14025397 -268168267 + L1PA3 LINE L1 5744 6053 -102 * 2899 177 34 14 chr1 14025393 14025951 -268167713 - L1MB7 LINE L1 -120 6064 5496 532 202 88 9 chr1 14026388 14026502 -268167162 - LTR67 LTR ERVL -3 554 432 2220 54 14 4 chr1 14026939 14027216 -268166448 - L1PA8 LINE L1 -3 6169 5890 1178 180 61 56 chr1 14027270 14027583 -268166081 - MSTD LTR MaLR -3 393 27 1411 210 120 17 chr1 14027583 14027940 -268165724 - MSTD LTR MaLR -2 394 1 1178 180 61 56 chr1 14027940 14027968 -268165696 - MSTD LTR MaLR -369 27 1 370 245 0 41 chr1 14028087 14028185 -268165479 - MLT1J2 LTR MaLR -5 445 352 747 310 10 0 chr1 14028298 14028498 -268165166 - MLT1J2 LTR MaLR -242 208 7 1725 182 109 17 chr1 14028695 14029053 -268164611 - MSTD LTR MaLR -2 394 4 303 308 46 15 chr1 14029357 14029487 -268164177 - L2 LINE L2 0 3313 3180 295 243 14 0 chr1 14029801 14029875 -268163789 + MER69 DNA AcHobo 2082 2156 -370 2445 231 10 20 chr1 14029875 14030471 -268163193 + L1ME2 LINE L1 5565 6154 -10 274 197 105 13 chr1 14030716 14030792 -268162872 - MLT1H LTR MaLR -14 535 453 1704 208 2 46 chr1 14030877 14031053 -268162611 + MER63B DNA MER1_type 1 183 -879 1384 68 45 0 chr1 14031053 14031229 -268162435 + L1PA7 LINE L1 5968 6151 -3 1704 208 2 46 chr1 14031229 14031465 -268162199 + MER63B DNA MER1_type 183 395 -41 229 328 115 0 chr1 14031946 14032068 -268161596 + L2 LINE L2 3137 3272 0 656 304 69 50 chr1 14032809 14033069 -268160595 + MLT1I LTR MaLR 68 332 -77 249 297 29 73 chr1 14033323 14033569 -268160095 - L2 LINE L2 -2 3311 3077 199 258 0 16 chr1 14034213 14034275 -268159389 - MIR SINE MIR -57 151 91 353 292 86 109 chr1 14034283 14034622 -268159042 - L2 LINE L2 -9 3263 2933 252 0 0 0 chr1 14034651 14034679 -268158985 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1570 258 98 15 chr1 14034830 14035443 -268158221 + L1ME3A LINE L1 3966 4629 -1517 1261 82 0 0 chr1 14035451 14035609 -268158055 + MLT2A1 LTR ERVL 206 363 -81 27152 135 13 20 chr1 14035679 14036930 -268156734 + L1PA8A LINE L1 3 1261 -5185 252 111 0 0 chr1 14036930 14036975 -268156689 + (CAA)n Simple_repeat Simple_repeat 2 46 0 27152 135 13 20 chr1 14036975 14038847 -268154817 + L1PA8A LINE L1 1261 3144 -3302 2077 139 3 3 chr1 14038847 14039157 -268154507 + AluSg SINE Alu 1 310 0 27152 135 13 20 chr1 14039157 14040562 -268153102 + L1PA8A LINE L1 3144 4557 -1889 2753 13 0 0 chr1 14040562 14040861 -268152803 - AluYa5 SINE Alu -12 299 1 27152 135 13 20 chr1 14040861 14042047 -268151617 + L1PA8A LINE L1 4557 5715 -731 2778 89 20 0 chr1 14042047 14042395 -268151269 + THE1A LTR MaLR 1 355 0 27152 135 13 20 chr1 14042395 14043123 -268150541 + L1PA8A LINE L1 5715 6446 0 1610 254 46 55 chr1 14043126 14044334 -268149330 + L1ME3A LINE L1 4623 5816 -354 763 186 12 47 chr1 14044339 14044490 -268149174 + L1ME3A LINE L1 5997 6143 -27 2686 115 57 34 chr1 14044490 14044908 -268148756 + MSTC LTR MaLR 1 428 0 763 186 12 47 chr1 14044908 14044928 -268148736 + L1ME3A LINE L1 6143 6162 -8 347 331 135 30 chr1 14044995 14045366 -268148298 - L2 LINE L2 -665 2649 2240 707 203 25 6 chr1 14045815 14045978 -268147686 - L1 LINE L1 -874 5272 5107 1205 170 81 24 chr1 14045987 14046234 -268147430 - MSTB LTR MaLR -3 423 163 4928 168 24 14 chr1 14046235 14047187 -268146477 - L1 LINE L1 -1101 5045 4084 340 339 53 12 chr1 14047629 14047800 -268145864 + MIR3 SINE MIR 12 189 -19 224 337 74 34 chr1 14048266 14048441 -268145223 - L2 LINE L2 -10 3303 3122 735 176 22 140 chr1 14048505 14048565 -268145099 - MIR SINE MIR -35 227 162 4225 151 20 22 chr1 14048565 14049299 -268144365 - L1MB3 LINE L1 -1 6182 5450 735 176 22 140 chr1 14049299 14049460 -268144204 - MIR SINE MIR -100 162 32 212 185 15 62 chr1 14050747 14050812 -268142852 + CT-rich Low_complexity Low_complexity 4 65 0 395 329 87 7 chr1 14050971 14051194 -268142470 + L2 LINE L2 2762 2998 -315 225 272 37 12 chr1 14051281 14051362 -268142302 - L3 LINE CR1 -120 1457 1375 810 201 80 20 chr1 14051389 14051647 -268142017 + MIR SINE MIR 6 254 -8 779 249 100 17 chr1 14051691 14052151 -268141513 + MER20B DNA MER1_type 1 543 -240 1562 151 26 79 chr1 14052312 14052616 -268141048 + AluSg SINE Alu 1 288 -22 267 191 32 16 chr1 14052699 14052762 -268140902 + MER20B DNA MER1_type 707 770 -13 518 266 20 64 chr1 14052812 14053015 -268140649 - L3 LINE CR1 -287 1290 1097 805 210 28 23 chr1 14054277 14054453 -268139211 + MER58 DNA MER1_type 1 177 -164 1541 51 0 0 chr1 14055247 14055425 -268138239 - AluSq SINE Alu 0 313 136 924 89 0 0 chr1 14055425 14055537 -268138127 + AluSq/x SINE Alu 18 129 -183 243 352 41 28 chr1 14055551 14055696 -268137968 - MIR SINE MIR -88 174 28 220 139 0 0 chr1 14056189 14056225 -268137439 - MIR SINE MIR -114 148 113 195 233 23 0 chr1 14057198 14057241 -268136423 - L2 LINE L2 -11 3261 3218 241 273 91 20 chr1 14057303 14057402 -268136262 - MIR SINE MIR -149 113 8 657 212 60 0 chr1 14057724 14057875 -268135789 - MIR SINE MIR -1 261 102 2963 170 13 31 chr1 14058263 14058811 -268134853 + MLT2B3 LTR ERVL 1 538 -16 181 206 16 79 chr1 14059121 14059184 -268134480 - L2 LINE L2 -216 3056 2998 3774 133 21 4 chr1 14059582 14060100 -268133564 - MER1A DNA MER1_type 0 527 1 1091 179 18 46 chr1 14060845 14061063 -268132601 - MER20B DNA MER1_type -7 212 1 370 243 199 15 chr1 14061088 14061224 -268132440 + MER5A DNA MER1_type 23 183 -6 315 289 218 13 chr1 14061248 14061404 -268132260 - MER5A DNA MER1_type 0 189 2 408 104 0 0 chr1 14062265 14062332 -268131332 + (A)n Simple_repeat Simple_repeat 1 67 0 21 57 0 0 chr1 14062367 14062402 -268131262 + AT_rich Low_complexity Low_complexity 1 35 0 372 306 29 40 chr1 14062607 14062780 -268130884 + MIR SINE MIR 14 184 -78 1689 166 9 31 chr1 14062812 14063131 -268130533 + AluJo SINE Alu 1 312 0 452 288 151 27 chr1 14063131 14063350 -268130314 - MIR SINE MIR -9 253 8 398 303 54 11 chr1 14063944 14064129 -268129535 + L1ME4a LINE L1 5677 5869 -252 378 275 128 27 chr1 14064551 14064700 -268128964 + MER5B DNA MER1_type 5 168 -10 253 232 89 0 chr1 14065160 14065216 -268128448 + MER5A DNA MER1_type 7 67 -122 245 246 16 0 chr1 14065304 14065365 -268128299 + MER5A DNA MER1_type 128 189 0 1088 192 10 0 chr1 14065373 14065571 -268128093 + MER3 DNA MER1_type 1 200 -9 21 71 0 0 chr1 14065941 14065983 -268127681 + AT_rich Low_complexity Low_complexity 1 42 0 312 215 19 56 chr1 14065984 14066091 -268127573 + L2 LINE L2 3203 3305 -8 421 223 115 31 chr1 14066092 14066222 -268127442 - MIR SINE MIR -113 149 9 414 261 200 0 chr1 14066406 14066521 -268127143 - MER5A DNA MER1_type -6 183 46 273 335 84 44 chr1 14066549 14066824 -268126840 - L2 LINE L2 -89 3183 2898 21 57 0 0 chr1 14067188 14067223 -268126441 + AT_rich Low_complexity Low_complexity 1 35 0 9027 21 0 0 chr1 14068534 14070068 -268123596 - L1PA2 LINE L1 -282 5873 4340 2758 26 0 0 chr1 14070068 14070369 -268123295 + L1PA2 LINE L1 5848 6151 -4 396 40 0 0 chr1 14070407 14070457 -268123207 + (CA)n Simple_repeat Simple_repeat 2 51 0 935 257 23 35 chr1 14071975 14072232 -268121432 - MIR SINE MIR 0 262 9 300 381 38 12 chr1 14072267 14072427 -268121237 + L2 LINE L2 2541 2704 -610 184 222 0 44 chr1 14073393 14073438 -268120226 + L2 LINE L2 449 491 -2823 1889 139 3 50 chr1 14075231 14075554 -268118110 - AluSx SINE Alu -4 308 1 455 268 43 53 chr1 14075775 14075984 -268117680 - L2 LINE L2 -212 3060 2854 867 117 17 0 chr1 14076320 14076440 -268117224 + FRAM SINE Alu 23 144 -32 2403 71 0 0 chr1 14076549 14076857 -268116807 - AluSg SINE Alu 0 308 1 518 314 15 15 chr1 14076864 14077068 -268116596 - L1ME4a LINE L1 -174 5947 5744 357 159 0 0 chr1 14077786 14077849 -268115815 + (TCCA)n Simple_repeat Simple_repeat 1 63 0 949 297 128 20 chr1 14077852 14078306 -268115358 - L2 LINE L2 0 3313 2811 208 270 151 56 chr1 14078537 14078663 -268115001 + MIR3 SINE MIR 17 154 -54 2254 102 0 23 chr1 14078663 14078968 -268114696 + AluSc SINE Alu 1 298 -11 306 164 0 0 chr1 14079815 14079870 -268113794 + (TG)n Simple_repeat Simple_repeat 2 56 0 210 37 0 0 chr1 14079870 14079897 -268113767 + (GA)n Simple_repeat Simple_repeat 1 27 0 2263 89 0 10 chr1 14080259 14080609 -268113055 + AluSx SINE Alu 1 312 0 2761 238 140 39 chr1 14080739 14082014 -268111650 - HAL1 LINE L1 0 2507 1104 525 279 48 69 chr1 14082019 14082352 -268111312 - HAL1 LINE L1 -2006 501 176 4027 135 42 54 chr1 14082692 14083435 -268110229 - L1MB3 LINE L1 0 6183 5450 494 250 18 61 chr1 14083486 14083650 -268110014 - MIR SINE MIR -50 212 56 422 250 83 22 chr1 14083651 14083831 -268109833 - MLT1F1 LTR MaLR -6 561 371 621 271 15 50 chr1 14084159 14084358 -268109306 + MIR SINE MIR 59 250 -12 195 42 0 0 chr1 14084363 14084387 -268109277 + (TTA)n Simple_repeat Simple_repeat 1 24 0 1228 254 100 58 chr1 14084519 14085050 -268108614 + MLT1H1 LTR MaLR 1 553 -2 269 333 13 0 chr1 14085132 14085210 -268108454 + MIR SINE MIR 1 79 -183 276 222 0 16 chr1 14085248 14085311 -268108353 + MIR SINE MIR 175 236 -26 474 260 72 50 chr1 14085442 14085623 -268108041 + MIR SINE MIR 63 247 -15 275 191 15 0 chr1 14086823 14086891 -268106773 + (TCCA)n Simple_repeat Simple_repeat 4 72 0 2257 109 16 0 chr1 14087368 14087672 -268105992 + AluSx SINE Alu 3 338 0 202 74 0 0 chr1 14087672 14087699 -268105965 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 570 224 66 56 chr1 14087792 14087988 -268105676 + MIR SINE MIR 31 228 -34 2311 122 0 3 chr1 14088172 14088484 -268105180 - AluSx SINE Alu -1 311 1 2109 21 0 0 chr1 14088536 14088772 -268104892 - L1PA4 LINE L1 -487 5668 5433 4190 25 4 2 chr1 14088772 14089255 -268104409 + L1PA4 LINE L1 5668 6153 -2 185 279 13 0 chr1 14089396 14089475 -268104189 + CT-rich Low_complexity Low_complexity 4 83 0 200 298 86 68 chr1 14089495 14089787 -268103877 - L2 LINE L2 -10 3262 2966 221 250 0 0 chr1 14089793 14089841 -268103823 + (TG)n Simple_repeat Simple_repeat 1 48 0 201 343 0 0 chr1 14089862 14090028 -268103636 + (TG)n Simple_repeat Simple_repeat 1 166 0 1681 180 70 17 chr1 14090116 14090472 -268103192 - THE1C LTR MaLR 0 375 1 1900 206 64 9 chr1 14090738 14091174 -268102490 - MER31B LTR ERV1 0 466 7 1871 134 47 0 chr1 14091350 14091625 -268102039 + AluJb SINE Alu 1 288 -24 318 252 17 42 chr1 14092527 14092646 -268101018 - L2 LINE L2 -269 3044 2929 1652 223 100 83 chr1 14092703 14093282 -268100382 + MLT1E LTR MaLR 1 589 -4 576 210 17 17 chr1 14093383 14093502 -268100162 + ORSL DNA AcHobo 1 119 -156 2108 172 23 0 chr1 14093506 14093860 -268099804 - Tigger2 DNA MER2_type -7 2711 2350 621 158 18 104 chr1 14093844 14094008 -268099656 - Tigger2 DNA MER2_type -2568 150 1 * 419 179 19 57 chr1 14094054 14094160 -268099504 + ORSL DNA AcHobo 172 273 -2 211 211 0 0 chr1 14094501 14094539 -268099125 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 884 178 6 25 chr1 14094704 14094861 -268098803 - MER20 DNA MER1_type -7 212 59 673 286 6 0 chr1 14094914 14095089 -268098575 + MIR SINE MIR 76 251 -11 2277 200 74 4 chr1 14095932 14096403 -268097261 + MLT1D LTR MaLR 1 504 -1 340 260 63 39 chr1 14096407 14096534 -268097130 - MIR SINE MIR -61 147 18 1247 125 0 0 chr1 14096674 14096842 -268096822 + AluJb SINE Alu 134 301 -11 2296 117 0 0 chr1 14096905 14097212 -268096452 - AluSg SINE Alu -3 307 1 207 244 0 0 chr1 14097383 14097424 -268096240 + L2 LINE L2 3262 3302 -11 388 171 145 34 chr1 14097554 14097671 -268095993 + L2 LINE L2 3184 3313 0 247 366 11 0 chr1 14098273 14098366 -268095298 - L2 LINE L2 -6 3266 3173 472 297 53 19 chr1 14098521 14098730 -268094934 - L2 LINE L2 -227 3086 2871 2399 190 22 71 chr1 14098890 14099470 -268094194 - MLT2B3 LTR ERVL -2 552 1 2450 70 3 0 chr1 14099864 14100166 -268093498 + AluY SINE Alu 3 305 -6 425 303 9 0 chr1 14100536 14100645 -268093019 + MER94 DNA DNA 24 133 -1 210 247 27 14 chr1 14100718 14100791 -268092873 + MIR SINE MIR 30 103 -105 257 291 22 99 chr1 14101067 14101249 -268092415 - L2 LINE L2 -218 3054 2887 406 322 35 14 chr1 14101401 14101544 -268092120 + L2 LINE L2 3127 3272 0 365 312 54 51 chr1 14102353 14102648 -268091016 - L2 LINE L2 -1 3312 3017 502 207 35 59 chr1 14103078 14103247 -268090417 + MER113 DNA MER1_type? 179 343 -178 1789 153 38 0 chr1 14103441 14103728 -268089936 + THE1B LTR MaLR 1 298 -66 1569 100 0 9 chr1 14103728 14103938 -268089726 - AluSg1 SINE Alu -44 265 58 226 276 17 0 chr1 14104226 14104284 -268089380 + Zaphod DNA AcHobo 9 67 -3964 392 229 12 0 chr1 14104823 14104906 -268088758 + MER115 DNA AcHobo 609 692 -1 3359 128 25 35 chr1 14105616 14106180 -268087484 - L1PB3 LINE L1 -23 6131 5574 656 269 13 70 chr1 14106729 14107045 -268086619 + L2 LINE L2 3015 3312 -1 835 263 160 38 chr1 14107454 14107903 -268085761 - MLT1K LTR MaLR -9 579 76 321 320 48 34 chr1 14108192 14108339 -268085325 - MER5B DNA MER1_type -29 149 1 2290 99 3 3 chr1 14108574 14108876 -268084788 - AluSg SINE Alu -8 302 1 2322 97 3 10 chr1 14109668 14109979 -268083685 + AluSc SINE Alu 1 309 0 282 309 49 8 chr1 14110667 14110790 -268082874 - MIR SINE MIR -102 160 33 321 356 15 8 chr1 14111775 14111907 -268081757 + MIR SINE MIR 18 150 -112 254 71 0 24 chr1 14111915 14111957 -268081707 + (ATG)n Simple_repeat Simple_repeat 2 42 0 235 289 74 16 chr1 14112218 14112339 -268081325 + MIR SINE MIR 63 190 -72 416 281 115 10 chr1 14112430 14112622 -268081042 + MIR SINE MIR 22 233 -29 4518 55 2 0 chr1 14113185 14113734 -268079930 - L1PA7 LINE L1 -5 6149 5600 1840 257 114 25 chr1 14113833 14114464 -268079200 - MER115 DNA AcHobo -6 687 1 524 271 26 7 chr1 14114542 14114697 -268078967 + MIR3 SINE MIR 28 185 -23 1065 185 16 0 chr1 14115523 14115619 -268078045 - MER20 DNA MER1_type -32 187 94 2193 136 79 57 chr1 14115619 14115779 -268077885 + MLT1C LTR MaLR 1 156 -311 2412 79 0 0 chr1 14115779 14116069 -268077595 + AluY SINE Alu 1 290 -21 2193 136 79 57 chr1 14116069 14116365 -268077299 + MLT1C LTR MaLR 156 467 0 1065 185 16 0 chr1 14116365 14116452 -268077212 - MER20 DNA MER1_type -125 94 1 679 233 0 0 chr1 14116455 14116584 -268077080 + MER58B DNA MER1_type 213 341 0 1619 231 74 14 chr1 14117425 14117858 -268075806 + MLT1C LTR MaLR 1 459 -8 205 313 16 16 chr1 14118088 14118152 -268075512 + L2 LINE L2 3199 3262 -10 * 280 304 0 0 chr1 14118147 14118226 -268075438 + MIR SINE MIR 80 158 -104 1385 141 0 60 chr1 14118246 14118467 -268075197 - MLT1A1 LTR MaLR 0 365 159 2288 97 7 3 chr1 14118467 14118765 -268074899 - AluSx SINE Alu -13 299 1 1385 141 0 60 chr1 14118765 14118790 -268074874 - MLT1A1 LTR MaLR -206 159 134 2498 138 18 39 chr1 14118790 14119028 -268074636 - MSTB LTR MaLR 0 426 200 3602 104 4 12 chr1 14119028 14119546 -268074118 - MER75 DNA T2_type 0 514 1 2498 138 18 39 chr1 14119546 14119742 -268073922 - MSTB LTR MaLR -226 200 1 797 185 22 0 chr1 14119742 14119877 -268073787 - MLT1A1 LTR MaLR -227 138 1 * 1339 242 87 34 chr1 14119877 14120371 -268073293 - MER34B LTR ERV1 -13 543 1 225 208 19 0 chr1 14120371 14120424 -268073240 + MIR SINE MIR 155 208 -54 901 241 14 5 chr1 14121222 14121429 -268072235 + MER58 DNA MER1_type 16 224 -2196 1710 134 3 75 chr1 14121520 14121854 -268071810 - AluJb SINE Alu 0 312 1 1520 56 17 0 chr1 14122693 14122872 -268070792 + AluY SINE Alu 1 182 -129 465 255 87 39 chr1 14123132 14123340 -268070324 + MIR SINE MIR 32 249 -13 267 244 154 0 chr1 14123652 14123730 -268069934 - L2 LINE L2 -1 3312 3223 377 313 122 15 chr1 14123788 14124123 -268069541 - L2 LINE L2 -601 2713 2343 329 254 0 9 chr1 14124479 14124493 -268069171 + (TATG)n Simple_repeat Simple_repeat 3 16 -95 1502 29 0 0 chr1 14124493 14124667 -268068997 + L1PA4 LINE L1 5977 6150 -5 329 254 0 9 chr1 14124667 14124762 -268068902 + (TATG)n Simple_repeat Simple_repeat 16 111 0 5766 214 70 39 chr1 14125045 14125980 -268067684 - L1ME1 LINE L1 -4 6231 5326 1707 117 8 19 chr1 14125980 14126245 -268067419 - L1PA10 LINE L1 -12 6156 5895 5766 214 70 39 chr1 14126245 14127952 -268065712 - L1ME1 LINE L1 -909 5326 3495 3535 244 48 47 chr1 14127950 14128792 -268064872 - L1ME1 LINE L1 -3033 3182 2342 * 727 151 32 8 chr1 14128792 14128918 -268064746 - L1MC1 LINE L1 -9 6324 6196 3535 244 48 47 chr1 14128918 14130387 -268063277 - L1ME1 LINE L1 -3873 2342 872 1246 279 55 69 chr1 14130394 14130611 -268063053 - L1ME1 LINE L1 -5760 636 417 2435 83 7 0 chr1 14130611 14130913 -268062751 + AluSg SINE Alu 1 304 -6 1246 279 55 69 chr1 14130913 14131319 -268062345 - L1ME1 LINE L1 -5979 417 22 2456 71 7 3 chr1 14131862 14132170 -268061494 - AluY SINE Alu -2 309 1 33 43 0 0 chr1 14132205 14132252 -268061412 + AT_rich Low_complexity Low_complexity 1 47 0 236 310 0 0 chr1 14132311 14132398 -268061266 - L1MC4 LINE L1 -1342 6700 6614 2679 177 68 29 chr1 14133457 14134005 -268059659 - MER39 LTR ERV1 -63 644 76 623 299 45 37 chr1 14134033 14134388 -268059276 + L1MC4a LINE L1 5524 5881 -1927 446 214 104 35 chr1 14134834 14135007 -268058657 - MER20 DNA MER1_type -34 185 1 2503 230 60 5 chr1 14135178 14135731 -268057933 - MLT1G LTR MaLR -5 585 3 394 153 42 0 chr1 14135778 14135850 -268057814 - MER116 DNA Mariner -4 76 2 32 57 0 0 chr1 14135932 14135985 -268057679 + AT_rich Low_complexity Low_complexity 1 53 0 291 119 0 0 chr1 14136360 14136402 -268057262 - MIR SINE MIR -6 256 215 291 292 51 25 chr1 14136684 14136821 -268056843 - MER5A DNA MER1_type -26 163 13 216 308 64 0 chr1 14136941 14137019 -268056645 - L2 LINE L2 -626 2688 2606 220 316 0 0 chr1 14137049 14137106 -268056558 - L2 LINE L2 -671 2643 2587 313 214 112 11 chr1 14137154 14137243 -268056421 + MLT1J LTR MaLR 214 311 -200 498 232 14 51 chr1 14137771 14137909 -268055755 - MIR SINE MIR -66 196 64 2536 152 72 77 chr1 14139079 14139693 -268053971 + LTR36 LTR ERV1 1 611 0 242 225 0 14 chr1 14139693 14139756 -268053908 + CT-rich Low_complexity Low_complexity 9 72 0 346 291 70 20 chr1 14139854 14140053 -268053611 + LTR33 LTR ERVL 313 521 0 3164 181 12 7 chr1 14140112 14140550 -268053114 - MER68 LTR ERV1 0 562 119 2189 111 62 31 chr1 14140550 14140903 -268052761 + THE1B LTR MaLR 1 364 0 3164 181 12 7 chr1 14140903 14141023 -268052641 - MER68 LTR ERV1 -443 119 1 380 298 57 66 chr1 14141038 14141266 -268052398 - MIR SINE MIR -7 255 30 345 328 69 0 chr1 14141322 14141438 -268052226 + L1ME4a LINE L1 5994 6117 -4 1582 174 65 78 chr1 14142494 14142694 -268050970 - MLT1B LTR MaLR -10 380 186 1800 134 7 39 chr1 14142694 14143000 -268050664 - AluSx SINE Alu -16 296 1 1582 174 65 78 chr1 14143000 14143184 -268050480 - MLT1B LTR MaLR -204 186 1 1700 170 89 77 chr1 14143184 14143666 -268049998 - MLT1D LTR MaLR -17 488 1 226 254 0 56 chr1 14145132 14145203 -268048461 - L2 LINE L2 -335 2978 2912 205 156 0 0 chr1 14145821 14145853 -268047811 + (CAA)n Simple_repeat Simple_repeat 2 33 0 842 112 0 41 chr1 14146710 14146879 -268046785 + (TCCC)n Simple_repeat Simple_repeat 3 164 0 272 68 0 23 chr1 14147143 14147187 -268046477 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 323 248 111 46 chr1 14147646 14147799 -268045865 + MIR3 SINE MIR 41 203 -5 567 331 58 58 chr1 14147836 14148247 -268045417 + L2 LINE L2 2857 3267 -5 213 263 50 61 chr1 14150216 14150315 -268043349 - MIR SINE MIR -32 230 133 1188 181 45 67 chr1 14150442 14150773 -268042891 + MER33 DNA MER1_type 1 324 0 297 382 10 0 chr1 14150879 14150981 -268042683 - L2 LINE L2 0 3272 3170 2253 98 0 0 chr1 14151512 14151817 -268041847 - AluSg SINE Alu -5 305 1 227 273 162 10 chr1 14152013 14152112 -268041552 + L2 LINE L2 3162 3275 -38 347 229 0 73 chr1 14152319 14152428 -268041236 + MLT1E1 LTR MaLR 57 157 -497 344 167 218 19 chr1 14152412 14152534 -268041130 + MLT1E1 LTR MaLR 118 319 -335 * 228 246 18 0 chr1 14152627 14152684 -268040980 + L2 LINE L2 3199 3256 -16 468 290 14 28 chr1 14153341 14153486 -268040178 - MIR SINE MIR -112 150 8 194 307 114 0 chr1 14153484 14153572 -268040092 + MIR SINE MIR 49 146 -62 * 314 315 161 7 chr1 14154540 14154689 -268038975 - MIR SINE MIR -2 260 89 1505 204 28 37 chr1 14154804 14155085 -268038579 - MLT1A2 LTR MaLR 0 374 92 2048 139 106 6 chr1 14155085 14155416 -268038248 + THE1B LTR MaLR 1 364 0 11730 102 6 1 chr1 14155416 14156988 -268036676 + THE1B-int LTR MaLR 1 1580 0 1952 149 98 15 chr1 14156988 14157324 -268036340 + THE1B LTR MaLR 1 364 0 1505 204 28 37 chr1 14157324 14157393 -268036271 - MLT1A2 LTR MaLR -279 95 25 435 281 83 46 chr1 14157422 14157639 -268036025 + MIR SINE MIR 32 256 -6 386 331 29 14 chr1 14158462 14158601 -268035063 - MIR3 SINE MIR -8 200 60 233 29 0 29 chr1 14158803 14158838 -268034826 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 533 233 170 0 chr1 14159633 14159792 -268033872 - MIR SINE MIR 0 262 77 3083 85 19 5 chr1 14159843 14160265 -268033399 - MSTA LTR MaLR 0 428 1 552 310 81 22 chr1 14160557 14160880 -268032784 + MLT1K LTR MaLR 85 426 -162 571 258 15 0 chr1 14161193 14161325 -268032339 - MIR SINE MIR -120 142 9 1188 250 176 33 chr1 14161346 14162088 -268031576 - L2 LINE L2 -10 3303 2432 267 331 130 19 chr1 14162198 14162352 -268031312 - MIR SINE MIR -19 243 73 589 186 20 0 chr1 14164013 14164115 -268029549 - U6 snRNA snRNA -1 106 3 800 167 0 69 chr1 14164881 14165055 -268028609 - MER20 DNA MER1_type 0 219 58 890 247 108 53 chr1 14165092 14165529 -268028135 + MLT1C LTR MaLR 7 467 0 291 342 30 40 chr1 14165665 14165966 -268027698 - L2 LINE L2 -401 2913 2616 229 269 29 67 chr1 14166168 14166272 -268027392 - MIR SINE MIR -65 143 44 375 278 12 87 chr1 14166332 14166534 -268027130 - MIR SINE MIR -70 192 19 2140 113 0 0 chr1 14166603 14166903 -268026761 + AluSx SINE Alu 1 300 -12 1805 172 30 57 chr1 14168128 14168529 -268025135 - MLT1B LTR MaLR 0 390 1 183 282 48 73 chr1 14168790 14168914 -268024750 + L2 LINE L2 3158 3278 -35 191 114 23 0 chr1 14169535 14169579 -268024085 + GA-rich Low_complexity Low_complexity 1 45 0 24 0 0 0 chr1 14170194 14170218 -268023446 + AT_rich Low_complexity Low_complexity 1 24 0 1854 161 151 19 chr1 14170711 14171089 -268022575 - MSTA LTR MaLR 0 428 1 371 330 5 91 chr1 14171193 14171402 -268022262 - L3 LINE CR1 -17 1560 1370 516 258 72 53 chr1 14171406 14171615 -268022049 - MLT1K LTR MaLR -1 587 375 495 320 207 4 chr1 14171776 14172032 -268021632 - LTR16C LTR ERVL -26 465 158 412 328 55 16 chr1 14172233 14172416 -268021248 - MLT1K LTR MaLR -388 200 11 416 279 25 50 chr1 14172433 14172594 -268021070 - L3 LINE CR1 -209 1368 1212 2114 97 0 0 chr1 14172866 14173220 -268020444 + AluSc SINE Alu 1 354 0 262 284 101 18 chr1 14173299 14173408 -268020256 + MLT1K LTR MaLR 2 119 -469 414 322 188 10 chr1 14174136 14174344 -268019320 - MIR SINE MIR -11 251 7 405 141 0 0 chr1 14174749 14174820 -268018844 + (CA)n Simple_repeat Simple_repeat 1 71 0 571 90 0 0 chr1 14174826 14174904 -268018760 - MADE1 DNA Mariner 0 80 3 413 310 17 58 chr1 14176065 14176239 -268017425 + MIR SINE MIR 84 250 -12 841 340 4 0 chr1 14177241 14177476 -268016188 + MIR SINE MIR 16 251 -11 1289 82 0 0 chr1 14177481 14177651 -268016013 - AluSp SINE Alu -6 307 138 188 313 0 0 chr1 14177651 14177699 -268015965 - L3 LINE CR1 -158 1419 1372 208 279 139 0 chr1 14177758 14177844 -268015820 + MIR SINE MIR 117 214 -48 234 0 0 0 chr1 14177862 14177888 -268015776 + (TG)n Simple_repeat Simple_repeat 2 27 0 693 294 64 11 chr1 14177903 14178314 -268015350 - MLT1L LTR MaLR -7 608 144 273 313 0 15 chr1 14179559 14179626 -268014038 + MIR3 SINE MIR 112 177 -31 494 31 16 0 chr1 14179707 14179771 -268013893 + (TG)n Simple_repeat Simple_repeat 2 66 0 809 307 15 38 chr1 14179914 14180178 -268013486 + MIR SINE MIR 4 261 -1 21 0 0 0 chr1 14181012 14181033 -268012631 + AT_rich Low_complexity Low_complexity 1 21 0 213 322 0 0 chr1 14181843 14181902 -268011762 + CT-rich Low_complexity Low_complexity 3 61 0 1612 269 69 64 chr1 14183018 14183496 -268010168 - HAL1 LINE L1 0 2507 2022 1769 183 0 0 chr1 14183496 14183797 -268009867 - AluJb SINE Alu -11 301 1 1612 269 69 64 chr1 14183797 14184178 -268009486 - HAL1 LINE L1 -485 2022 1644 956 109 0 0 chr1 14184240 14184368 -268009296 - FLAM_C SINE Alu -5 128 1 2122 141 64 38 chr1 14184369 14184788 -268008876 - MSTB1 LTR MaLR 0 432 3 1899 137 3 7 chr1 14184940 14185232 -268008432 + AluJo SINE Alu 1 291 -21 189 94 0 0 chr1 14185233 14185265 -268008399 + (CA)n Simple_repeat Simple_repeat 2 33 0 1939 124 39 0 chr1 14185366 14185649 -268008015 - AluSx SINE Alu -18 294 1 550 279 103 69 chr1 14185802 14186032 -268007632 - HAL1 LINE L1 -585 1922 1701 2439 83 0 3 chr1 14186032 14186346 -268007318 + AluSq SINE Alu 1 313 0 550 279 103 69 chr1 14186346 14186620 -268007044 - HAL1 LINE L1 -806 1701 1401 2072 169 44 46 chr1 14186655 14187088 -268006576 + Tigger2a DNA MER2_type 3 434 0 424 278 32 137 chr1 14187089 14187291 -268006373 + MIR SINE MIR 11 178 -84 2301 82 0 13 chr1 14187291 14187597 -268006067 + AluSc SINE Alu 1 302 -7 424 278 32 137 chr1 14187597 14187671 -268005993 + MIR SINE MIR 178 258 -4 1846 121 81 4 chr1 14187719 14187998 -268005666 + AluJb SINE Alu 3 296 -16 678 283 76 64 chr1 14188106 14188608 -268005056 - HAL1 LINE L1 -1319 1188 681 324 103 0 0 chr1 14188813 14188871 -268004793 + (TTCC)n Simple_repeat Simple_repeat 1 58 0 2195 111 6 19 chr1 14188871 14189186 -268004478 - AluY SINE Alu 0 311 1 304 246 14 0 chr1 14189892 14189961 -268003703 - MIR SINE MIR -61 147 78 268 246 118 9 chr1 14190630 14190740 -268002924 - L1ME4a LINE L1 -7 6114 5993 209 304 9 80 chr1 14191306 14191418 -268002246 - L2 LINE L2 -33 3280 3177 21226 159 22 15 chr1 14191812 14193273 -268000391 - L1MA2 LINE L1 0 7723 6274 2468 81 0 10 chr1 14193273 14193581 -268000083 + AluSp SINE Alu 2 306 -7 21226 159 22 15 chr1 14193581 14194730 -267998934 - L1MA2 LINE L1 -1449 6274 5135 393 22 0 0 chr1 14194730 14194776 -267998888 + (TTCC)n Simple_repeat Simple_repeat 3 48 0 21226 159 22 15 chr1 14194776 14195419 -267998245 - L1MA2 LINE L1 -2588 5135 4498 2038 155 0 0 chr1 14195419 14195716 -267997948 - AluSx SINE Alu -2 310 14 21226 159 22 15 chr1 14195716 14197485 -267996179 - L1MA2 LINE L1 -3225 4498 2743 2141 130 49 32 chr1 14197485 14197854 -267995810 - THE1C LTR MaLR 0 375 1 21226 159 22 15 chr1 14197854 14200468 -267993196 - L1MA2 LINE L1 -4980 2743 16 2312 250 17 11 chr1 14200968 14201500 -267992164 - MLT1F LTR MaLR -2 540 6 451 337 44 77 chr1 14201533 14202186 -267991478 - MLT1F-int LTR MaLR -41 1330 699 2438 93 0 0 chr1 14202312 14202623 -267991041 - AluY SINE Alu 0 311 1 549 305 19 0 chr1 14202705 14202859 -267990805 - MLT1F-int LTR MaLR -770 601 445 4452 140 38 4 chr1 14202866 14203560 -267990104 - MER50 LTR ERV1 -17 717 1 393 266 28 64 chr1 14203661 14203879 -267989785 - MLT1F-int LTR MaLR -1161 210 1 1328 253 104 10 chr1 14203879 14204234 -267989430 - MLT1F LTR MaLR 0 542 145 246 32 0 0 chr1 14204234 14204265 -267989399 + (TG)n Simple_repeat Simple_repeat 2 32 0 1328 253 104 10 chr1 14204265 14204304 -267989360 - MLT1F LTR MaLR -397 145 111 2356 100 6 0 chr1 14204307 14204618 -267989046 - AluSp SINE Alu 0 313 1 1988 113 8 0 chr1 14205828 14206116 -267987548 + AluSx SINE Alu 17 306 0 390 239 61 1 chr1 14206153 14206262 -267987402 + MIR SINE MIR 38 150 -61 1937 145 10 0 chr1 14207220 14207523 -267986141 + AluSq SINE Alu 1 306 -7 435 294 55 12 chr1 14208534 14208697 -267984967 + MIR SINE MIR 80 249 -13 245 240 27 13 chr1 14208868 14208943 -267984721 - MLT1K LTR MaLR -1 587 512 210 143 0 0 chr1 14209068 14209103 -267984561 + (TCCCC)n Simple_repeat Simple_repeat 2 36 0 599 304 36 32 chr1 14209518 14209738 -267983926 - MIR SINE MIR -28 234 14 3272 158 71 34 chr1 14210298 14210508 -267983156 - L1MB5 LINE L1 -6 6168 5967 1990 124 28 0 chr1 14210508 14210791 -267982873 - AluSg SINE Alu -19 291 1 3272 158 71 34 chr1 14210791 14211224 -267982440 - L1MB5 LINE L1 -207 5967 5501 314 266 9 64 chr1 14212190 14212299 -267981365 - L2 LINE L2 -14 3299 3197 1168 227 49 166 chr1 14212336 14212952 -267980712 - MLT1H1 LTR MaLR -7 588 1 813 263 108 32 chr1 14213022 14213300 -267980364 - MLT1K LTR MaLR 0 588 290 288 266 44 80 chr1 14213309 14213422 -267980242 + MLT1K LTR MaLR 237 345 -243 913 257 81 37 chr1 14213471 14213743 -267979921 - MLT1K LTR MaLR -302 286 3 2028 190 71 29 chr1 14213934 14214455 -267979209 - LTR55 LTR ERV -5 543 1 266 314 29 20 chr1 14214544 14214646 -267979018 - MIR SINE MIR -2 260 158 394 322 0 0 chr1 14214676 14214797 -267978867 - MLT1I LTR MaLR -232 177 57 2431 76 0 0 chr1 14214879 14215182 -267978482 - AluY SINE Alu -8 303 1 1673 259 43 42 chr1 14216550 14216664 -267977000 - L1MEc LINE L1 -4308 2088 1976 2175 106 0 0 chr1 14216664 14216946 -267976718 + AluSg SINE Alu 8 289 -21 1673 259 43 42 chr1 14216946 14217456 -267976208 - L1MEc LINE L1 -4420 1976 1463 2346 277 81 55 chr1 14217531 14217710 -267975954 - L1MEc LINE L1 -4930 1466 1293 2259 111 61 25 chr1 14217710 14218072 -267975592 + THE1C LTR MaLR 1 375 0 2346 277 81 55 chr1 14218072 14219289 -267974375 - L1MEc LINE L1 -5103 1293 34 456 231 35 106 chr1 14219474 14219673 -267973991 - L2 LINE L2 -4 3309 3125 357 336 8 16 chr1 14219922 14220044 -267973620 + L2 LINE L2 3140 3260 -12 327 341 17 12 chr1 14223943 14224116 -267969548 + CT-rich Low_complexity Low_complexity 3 176 0 221 200 36 0 chr1 14224165 14224220 -267969444 + CT-rich Low_complexity Low_complexity 4 60 0 254 221 63 63 chr1 14226108 14226203 -267967461 - LTR67 LTR ERVL -4 553 459 1053 201 0 16 chr1 14227374 14227563 -267966101 + MER20 DNA MER1_type 33 218 -1 329 330 0 8 chr1 14227702 14227820 -267965844 - L2 LINE L2 -20 3252 3136 387 0 0 0 chr1 14227974 14228017 -267965647 + (TG)n Simple_repeat Simple_repeat 1 43 0 245 191 79 0 chr1 14229174 14229237 -267964427 - MLT1H LTR MaLR 0 549 482 442 232 155 82 chr1 14229331 14229538 -267964126 - MLT1H LTR MaLR -199 350 129 644 274 48 0 chr1 14230059 14230227 -267963437 - MIR SINE MIR -15 247 72 1241 261 86 0 chr1 14230230 14230556 -267963108 + MLT1H LTR MaLR 1 354 -195 226 227 0 0 chr1 14230655 14230699 -267962965 + MLT1H LTR MaLR 506 549 0 384 239 23 0 chr1 14230745 14230833 -267962831 - MLT1J2 LTR MaLR -356 94 5 281 366 158 14 chr1 14230868 14231373 -267962291 - L2 LINE L2 -513 2801 2224 487 259 56 7 chr1 14231400 14231543 -267962121 - LTR67 LTR ERVL 0 557 408 333 260 0 0 chr1 14231978 14232055 -267961609 + MLT1K LTR MaLR 510 586 -2 1769 183 63 82 chr1 14232571 14232721 -267960943 + MLT1C LTR MaLR 1 152 -315 2183 125 82 17 chr1 14232721 14233073 -267960591 + THE1C LTR MaLR 1 375 0 1769 183 63 82 chr1 14233073 14233398 -267960266 + MLT1C LTR MaLR 152 467 0 22 0 0 0 chr1 14234903 14234925 -267958739 + AT_rich Low_complexity Low_complexity 1 22 0 288 0 0 0 chr1 14235291 14235323 -267958341 + (CA)n Simple_repeat Simple_repeat 1 32 0 267 209 30 30 chr1 14235439 14235506 -267958158 + HAL1 LINE L1 956 1022 -1485 2598 301 117 24 chr1 14235524 14237118 -267956546 - L2 LINE L2 0 3313 1562 201 162 0 0 chr1 14237149 14237186 -267956478 + A-rich Low_complexity Low_complexity 1 37 0 2142 135 3 0 chr1 14237186 14237497 -267956167 + AluSx SINE Alu 1 312 0 180 97 0 0 chr1 14237808 14237839 -267955825 + (TAG)n Simple_repeat Simple_repeat 2 32 0 1997 167 0 0 chr1 14238097 14238402 -267955262 + AluSx SINE Alu 1 305 -7 928 274 21 4 chr1 14238504 14238738 -267954926 - MIR SINE MIR -16 246 9 244 325 80 28 chr1 14239023 14239272 -267954392 + L2 LINE L2 2848 3109 -204 218 328 95 9 chr1 14239407 14239523 -267954141 + L3b LINE CR1 1309 1434 -149 375 263 51 28 chr1 14239895 14240164 -267953500 + L1ME4a LINE L1 5710 6071 -50 24 32 0 0 chr1 14240627 14240658 -267953006 + AT_rich Low_complexity Low_complexity 1 31 0 2345 85 3 0 chr1 14241454 14241747 -267951917 - AluSp SINE Alu -19 294 1 530 276 105 19 chr1 14241788 14241998 -267951666 - MIR SINE MIR -17 245 18 233 302 31 10 chr1 14242282 14242378 -267951286 + MIR SINE MIR 21 118 -90 1847 97 4 4 chr1 14242554 14242802 -267950862 + AluSq SINE Alu 41 288 -25 191 167 28 0 chr1 14243032 14243068 -267950596 + L2 LINE L2 3262 3298 -15 667 261 144 62 chr1 14244670 14245072 -267948592 - MLT1J1 LTR MaLR -11 435 1 2134 110 0 10 chr1 14245394 14245686 -267947978 + AluSc SINE Alu 13 301 -8 961 50 0 17 chr1 14245688 14245808 -267947856 + L1PA4 LINE L1 6031 6148 -7 31 68 0 0 chr1 14246368 14246427 -267947237 + AT_rich Low_complexity Low_complexity 1 59 0 547 298 34 14 chr1 14246519 14246727 -267946937 - L1ME4a LINE L1 -257 5864 5653 2314 125 0 0 chr1 14246732 14247043 -267946621 - AluSq SINE Alu -2 311 1 637 214 205 30 chr1 14247229 14247294 -267946370 + MER96B DNA MER1_type? 140 192 -225 189 0 0 0 chr1 14247294 14247315 -267946349 + (CTCA)n Simple_repeat Simple_repeat 4 24 0 637 214 205 30 chr1 14247315 14247483 -267946181 + MER96B DNA MER1_type? 192 414 -3 192 200 0 0 chr1 14248173 14248218 -267945446 + (TTCA)n Simple_repeat Simple_repeat 3 47 0 394 284 35 26 chr1 14248219 14248335 -267945329 - L2 LINE L2 -19 3253 3137 21 0 0 0 chr1 14249314 14249335 -267944329 + AT_rich Low_complexity Low_complexity 1 21 0 3025 82 0 3 chr1 14249854 14250219 -267943445 + THE1B LTR MaLR 1 364 0 2046 182 46 57 chr1 14250344 14250867 -267942797 - Charlie1b DNA MER1_type -6 517 1 2364 93 0 13 chr1 14250990 14251303 -267942361 - AluY SINE Alu -2 309 1 585 231 123 51 chr1 14251385 14251580 -267942084 - MER63A DNA MER1_type 0 210 2 2075 277 130 18 chr1 14253159 14253990 -267939674 - L2 LINE L2 -254 3059 2139 407 280 47 61 chr1 14254005 14254219 -267939445 + L2 LINE L2 3103 3313 0 252 289 248 13 chr1 14254429 14254578 -267939086 - L2 LINE L2 -775 2539 2356 231 304 87 22 chr1 14254615 14254707 -267938957 - L2 LINE L2 -38 3234 3137 316 296 141 21 chr1 14255445 14255587 -267938077 - MIR SINE MIR -102 160 2 2029 129 10 3 chr1 14256411 14256705 -267936959 + AluSq SINE Alu 2 297 -16 1082 210 122 18 chr1 14256757 14257077 -267936587 + MSTD LTR MaLR 1 396 0 799 328 75 22 chr1 14257286 14257832 -267935832 + HAL1b LINE L1 64 638 -710 2078 211 56 59 chr1 14257987 14258955 -267934709 + L1MC5 LINE L1 6478 7521 -440 276 281 32 74 chr1 14259031 14259248 -267934416 + L1ME3A LINE L1 5962 6169 -1 185 379 11 23 chr1 14259488 14259575 -267934089 - L2 LINE L2 -189 3083 2998 443 313 37 28 chr1 14259982 14260199 -267933465 + L2 LINE L2 2256 2474 -840 184 286 214 10 chr1 14260761 14260859 -267932805 - L2 LINE L2 -5 3267 3150 219 300 33 0 chr1 14261075 14261135 -267932529 - L2 LINE L2 -44 3228 3167 219 170 0 0 chr1 14262693 14262740 -267930924 + (CAT)n Simple_repeat Simple_repeat 2 48 0 689 225 5 42 chr1 14264571 14264784 -267928880 - MER20B DNA MER1_type -21 762 558 5950 152 41 35 chr1 14264784 14266848 -267926816 + L1PA15 LINE L1 4087 6161 -4 813 239 162 42 chr1 14266848 14267000 -267926664 - MER20B DNA MER1_type -203 580 448 1181 256 111 55 chr1 14267000 14267524 -267926140 - MLT1H1 LTR MaLR -2 553 1 813 239 162 42 chr1 14267524 14267655 -267926009 - MER20B DNA MER1_type -335 448 263 314 263 40 40 chr1 14267828 14267927 -267925737 - MER20B DNA MER1_type -590 193 95 237 210 0 0 chr1 14268066 14268128 -267925536 + (ATG)n Simple_repeat Simple_repeat 1 62 0 386 329 72 6 chr1 14268150 14268317 -267925347 - MIR SINE MIR -26 236 59 989 194 54 0 chr1 14269896 14270082 -267923582 + MER3 DNA MER1_type 4 199 -10 313 248 76 109 chr1 14270243 14270481 -267923183 - MIR SINE MIR -12 250 21 449 312 25 6 chr1 14270844 14271001 -267922663 + MIR SINE MIR 89 248 -14 278 362 80 7 chr1 14271427 14271565 -267922099 + MIR3 SINE MIR 19 166 -42 1454 242 103 24 chr1 14271656 14272073 -267921591 - MLT1J2 LTR MaLR 0 450 1 239 274 12 122 chr1 14272993 14273050 -267920614 + MIR SINE MIR 111 173 -89 1824 164 7 16 chr1 14273050 14273354 -267920310 - AluJo SINE Alu -11 301 1 239 274 12 122 chr1 14273354 14273460 -267920204 + MIR SINE MIR 173 256 -6 6490 38 0 7 chr1 14273746 14274478 -267919186 + L1PA7 LINE L1 5420 6146 -8 256 266 65 65 chr1 14274708 14274847 -267918817 + L1MB7 LINE L1 5548 5686 -435 * 1475 189 18 4 chr1 14274844 14275124 -267918540 + L1M4 LINE L1 5533 5816 -368 * 1975 175 72 22 chr1 14275105 14275561 -267918103 + L1MB7 LINE L1 5706 6184 0 230 326 69 0 chr1 14275557 14275701 -267917963 + L1ME LINE L1 5665 5818 -303 * 1557 188 0 20 chr1 14276555 14276853 -267916811 + AluJb SINE Alu 1 292 -20 198 261 0 0 chr1 14277582 14277628 -267916036 - L2 LINE L2 -2 3311 3266 267 309 0 0 chr1 14277830 14277927 -267915737 - L1M4 LINE L1 -3056 3090 2994 876 97 8 0 chr1 14277953 14278077 -267915587 - L1MB8 LINE L1 0 6178 6054 233 277 24 24 chr1 14278077 14278160 -267915504 + MIR SINE MIR 159 241 -21 2479 85 3 0 chr1 14279371 14279678 -267913986 - AluSp SINE Alu -4 309 2 697 179 99 94 chr1 14279712 14279913 -267913751 + MER20 DNA MER1_type 11 212 -7 331 295 16 111 chr1 14280812 14281002 -267912662 + MIR SINE MIR 43 214 -48 260 260 0 27 chr1 14281144 14281217 -267912447 - MIR SINE MIR -116 92 22 300 297 73 42 chr1 14281481 14281646 -267912018 - MIR SINE MIR -9 253 84 330 185 185 0 chr1 14282405 14282486 -267911178 - L2 LINE L2 -11 3302 3207 471 139 101 0 chr1 14283501 14283580 -267910084 + L1MB1 LINE L1 6082 6168 0 794 228 234 39 chr1 14284350 14284862 -267908802 - L2 LINE L2 -1 3312 2701 1715 131 0 15 chr1 14284874 14285142 -267908522 - AluSx SINE Alu -6 306 43 988 265 80 43 chr1 14285281 14285718 -267907946 - L1ME4a LINE L1 -233 5888 5436 3990 102 32 4 chr1 14285720 14286258 -267907406 + L1PA10 LINE L1 5614 6166 -2 274 307 25 25 chr1 14286642 14286805 -267906859 - L1ME3A LINE L1 -208 5962 5800 415 287 7 26 chr1 14286814 14287010 -267906654 - L1ME3A LINE L1 -529 5641 5449 648 130 3 3 chr1 14287515 14287627 -267906037 - L1PA8A LINE L1 -191 5940 5829 332 312 83 0 chr1 14288256 14288365 -267905299 + MIR3 SINE MIR 38 155 -53 271 339 116 46 chr1 14288368 14288695 -267904969 - L2 LINE L2 -5 3267 2918 2069 243 89 16 chr1 14288727 14289275 -267904389 + MLT1G LTR MaLR 1 588 -2 743 314 98 10 chr1 14289439 14289828 -267903836 - MLT1K LTR MaLR -42 546 124 830 284 78 21 chr1 14290876 14291158 -267902506 - MLT1J2 LTR MaLR -2 448 151 372 273 10 0 chr1 14291175 14291274 -267902390 + L1ME LINE L1 5563 5662 -504 281 200 27 67 chr1 14291316 14291391 -267902273 - MLT1J2 LTR MaLR -378 72 1 1821 156 71 73 chr1 14292811 14292991 -267900673 - MSTA LTR MaLR -5 423 244 2486 87 3 0 chr1 14292991 14293300 -267900364 + AluSg SINE Alu 1 310 0 1821 156 71 73 chr1 14293300 14293543 -267900121 - MSTA LTR MaLR -184 244 1 467 293 89 22 chr1 14293829 14294054 -267899610 - MIR SINE MIR -21 241 2 314 203 0 55 chr1 14294547 14294675 -267898989 + GA-rich Low_complexity Low_complexity 2 122 0 337 273 38 30 chr1 14294791 14294923 -267898741 + MIR SINE MIR 73 205 -57 4146 31 0 1 chr1 14295276 14295864 -267897800 - L1M4 LINE L1 -693 5491 4911 2221 8 0 0 chr1 14295861 14296106 -267897558 + L1HS LINE L1 5910 6154 -1 * 240 111 0 0 chr1 14296110 14296146 -267897518 + (A)n Simple_repeat Simple_repeat 1 36 0 2351 68 0 61 chr1 14296354 14296680 -267896984 - AluY SINE Alu 0 311 6 256 252 139 40 chr1 14296855 14297006 -267896658 + MIR SINE MIR 40 205 -57 953 205 263 18 chr1 14298281 14298672 -267894992 - L2 LINE L2 0 3313 2827 595 241 90 9 chr1 14298865 14299077 -267894587 - MIR SINE MIR -21 241 13 455 278 81 5 chr1 14299282 14299483 -267894181 + MIR SINE MIR 21 236 -26 782 191 15 0 chr1 14300284 14300415 -267893249 + AluJo SINE Alu 3 135 -177 2179 243 70 25 chr1 14302160 14302515 -267891149 - MLT1E2 LTR MaLR -9 617 225 1882 195 49 21 chr1 14302515 14302900 -267890764 + MSTD LTR MaLR 1 396 0 2179 243 70 25 chr1 14302900 14303116 -267890548 - MLT1E2 LTR MaLR -401 225 20 216 228 0 0 chr1 14304214 14304271 -267889393 + (TGGA)n Simple_repeat Simple_repeat 4 60 0 2705 171 42 47 chr1 14304555 14305037 -267888627 - MER6A DNA MER2_type -318 547 67 1466 62 0 16 chr1 14305037 14305231 -267888433 - L1PA4 LINE L1 0 6155 5965 2705 171 42 47 chr1 14305231 14305297 -267888367 - MER6A DNA MER2_type -798 67 2 1238 137 5 46 chr1 14305338 14305418 -267888246 - MER2 DNA MER2_type -134 211 129 1361 110 64 14 chr1 14305418 14305636 -267888028 + MER30 DNA MER1_type 2 230 0 1238 137 5 46 chr1 14305636 14305774 -267887890 - MER2 DNA MER2_type -216 129 2 2051 117 29 0 chr1 14305851 14306132 -267887532 + AluSx SINE Alu 16 304 -8 1147 163 40 26 chr1 14307096 14307323 -267886341 + MER106A DNA MER1_type 6 235 -1 571 218 17 16 chr1 14307872 14308004 -267885660 - MSTB2 LTR MaLR 0 457 264 855 121 38 0 chr1 14308009 14308141 -267885523 - MSTB2 LTR MaLR -320 137 1 299 254 15 0 chr1 14308143 14308210 -267885454 - MLT1K LTR MaLR -341 247 180 448 242 87 37 chr1 14308396 14308557 -267885107 + MIR SINE MIR 88 256 -6 1986 127 68 6 chr1 14308955 14309293 -267884371 - MLT1B LTR MaLR -7 383 25 353 209 90 122 chr1 14310085 14310335 -267883329 - MLT1H LTR MaLR 0 549 192 2368 97 0 3 chr1 14310553 14310863 -267882801 + AluSg SINE Alu 1 309 -1 271 284 39 29 chr1 14310917 14311019 -267882645 - MIR3 SINE MIR -15 193 91 244 336 41 13 chr1 14312430 14312612 -267881052 - MER5B DNA MER1_type -2 186 1 367 217 75 50 chr1 14312647 14312767 -267880897 + MIR SINE MIR 47 169 -93 26 50 0 0 chr1 14312971 14313011 -267880653 + AT_rich Low_complexity Low_complexity 1 40 0 307 278 17 43 chr1 14313069 14313184 -267880480 - L1ME3A LINE L1 -88 6082 5971 950 191 0 6 chr1 14313223 14313391 -267880273 + MER5A DNA MER1_type 1 167 -22 423 0 0 0 chr1 14313421 14313468 -267880196 + (TG)n Simple_repeat Simple_repeat 2 48 0 834 242 33 15 chr1 14313471 14313744 -267879920 - L1ME3A LINE L1 -208 5962 5685 378 0 0 0 chr1 14314137 14314179 -267879485 + (TG)n Simple_repeat Simple_repeat 2 43 0 706 242 93 73 chr1 14314181 14314234 -267879430 - L1ME3A LINE L1 -2143 4003 3953 270 56 0 0 chr1 14314234 14314270 -267879394 + (CAT)n Simple_repeat Simple_repeat 3 38 0 706 242 93 73 chr1 14314270 14314357 -267879307 - L1ME3A LINE L1 -2193 3953 3869 1841 191 78 38 chr1 14314357 14314806 -267878858 - MLT1C LTR MaLR 0 467 1 706 242 93 73 chr1 14314806 14315061 -267878603 - L1ME3A LINE L1 -2277 3869 3599 850 224 53 12 chr1 14315077 14315322 -267878342 - L1MC5 LINE L1 -45 7916 7662 2429 94 3 0 chr1 14315360 14315668 -267877996 + AluSc SINE Alu 1 309 0 1316 76 0 0 chr1 14316009 14316167 -267877497 + AluSq SINE Alu 146 303 -10 1064 228 45 62 chr1 14316196 14316268 -267877396 - L1MC5 LINE L1 -241 7720 7648 2304 104 3 0 chr1 14316268 14316566 -267877098 - AluSx SINE Alu -13 299 1 1064 228 45 62 chr1 14316566 14316976 -267876688 - L1MC5 LINE L1 -313 7648 7246 454 232 60 20 chr1 14316984 14317135 -267876529 - Charlie2 DNA MER1_type -43 2819 2663 205 286 65 0 chr1 14317593 14317670 -267875994 + MIR SINE MIR 120 201 -61 * 295 290 56 9 chr1 14317668 14317775 -267875889 - L2 LINE L2 0 3313 3202 2228 166 30 38 chr1 14317929 14318057 -267875607 + MLT1C LTR MaLR 1 129 -338 2360 82 0 28 chr1 14318057 14318375 -267875289 + AluY SINE Alu 1 309 -2 2228 166 30 38 chr1 14318375 14318717 -267874947 + MLT1C LTR MaLR 129 467 0 856 241 37 17 chr1 14318750 14318991 -267874673 - MIR SINE MIR 0 262 17 398 179 189 0 chr1 14319838 14319933 -267873731 + MER81 DNA DNA 2 114 0 4273 168 25 56 chr1 14321386 14322283 -267871381 + L1MB7 LINE L1 5309 6177 -7 408 326 73 23 chr1 14322300 14322712 -267870952 - L2 LINE L2 -238 3034 2600 405 273 80 27 chr1 14323067 14323254 -267870410 + MIR SINE MIR 66 262 0 735 251 18 6 chr1 14323604 14323775 -267869889 + MER45A DNA AcHobo 6 178 0 2052 171 17 0 chr1 14324043 14324389 -267869275 - MLT1B LTR MaLR 0 390 39 248 225 297 0 chr1 14324439 14324550 -267869114 + MIR SINE MIR 119 262 0 249 304 0 0 chr1 14325268 14325337 -267868327 + MLT1J LTR MaLR 110 178 -333 30606 115 11 10 chr1 14325358 14329792 -267863872 - L1P LINE L1 -1694 4452 11 1558 110 9 0 chr1 14329804 14330023 -267863641 + THE1C LTR MaLR 155 375 0 356 211 14 0 chr1 14330023 14330094 -267863570 - MER6B DNA MER2_type -201 75 4 201 163 61 0 chr1 14330096 14330145 -267863519 + (TATG)n Simple_repeat Simple_repeat 2 53 0 295 298 170 0 chr1 14330994 14331165 -267862499 - MIR SINE MIR -6 256 57 204 214 0 0 chr1 14331357 14331413 -267862251 + CT-rich Low_complexity Low_complexity 2 57 0 611 291 18 18 chr1 14331953 14332173 -267861491 - MIR SINE MIR -34 228 9 422 261 136 0 chr1 14332394 14332570 -267861094 - MIR SINE MIR -27 235 36 2447 115 8 21 chr1 14332744 14333126 -267860538 - L1PA12 LINE L1 -242 5926 5550 503 235 35 0 chr1 14333135 14333250 -267860414 + L2 LINE L2 3176 3294 -19 2234 88 0 24 chr1 14333544 14333859 -267859805 + AluSq SINE Alu 4 313 0 929 227 100 0 chr1 14334891 14335151 -267858513 + MER33 DNA MER1_type 9 294 -30 570 296 26 22 chr1 14335158 14335384 -267858280 - L2 LINE L2 -46 3267 3041 475 274 55 0 chr1 14335993 14336139 -267857525 + MIR SINE MIR 31 184 -78 329 335 6 0 chr1 14336533 14336712 -267856952 + (CA)n Simple_repeat Simple_repeat 1 180 0 655 232 107 0 chr1 14336955 14337123 -267856541 + MIR SINE MIR 42 227 -35 278 287 70 26 chr1 14337343 14337458 -267856206 + MIR SINE MIR 13 132 -130 2023 116 28 7 chr1 14337637 14337921 -267855743 - AluSc SINE Alu -2 307 18 180 200 0 0 chr1 14337984 14338024 -267855640 + (TG)n Simple_repeat Simple_repeat 1 40 0 299 200 152 19 chr1 14338078 14338183 -267855481 - MLT1L LTR MaLR 0 615 497 1926 139 11 7 chr1 14338957 14339244 -267854420 + AluJb SINE Alu 1 288 -24 641 227 19 13 chr1 14340067 14340221 -267853443 - L2 LINE L2 0 3313 3159 2016 125 0 0 chr1 14340232 14340504 -267853160 + AluSx SINE Alu 1 272 -40 204 40 0 0 chr1 14340516 14340541 -267853123 + (GAAAA)n Simple_repeat Simple_repeat 4 28 0 318 216 148 0 chr1 14340787 14340875 -267852789 - MLT1I LTR MaLR -238 171 71 451 322 87 80 chr1 14340946 14341307 -267852357 - L2 LINE L2 -222 3091 2724 1528 154 0 17 chr1 14341307 14341547 -267852117 - AluJb SINE Alu -76 236 1 451 322 87 80 chr1 14341547 14341767 -267851897 - L2 LINE L2 -589 2724 2507 396 288 132 27 chr1 14342809 14343066 -267850598 + L2 LINE L2 2991 3274 -39 563 273 33 49 chr1 14344161 14344281 -267849383 + MER5A DNA MER1_type 1 118 -71 1895 118 4 4 chr1 14344281 14344552 -267849112 - AluY SINE Alu -38 273 3 563 273 33 49 chr1 14344552 14344614 -267849050 + MER5A DNA MER1_type 118 180 -9 27 0 0 0 chr1 14345954 14345981 -267847683 + AT_rich Low_complexity Low_complexity 1 27 0 532 281 89 37 chr1 14348404 14348650 -267845014 - MIR SINE MIR -1 261 3 2603 225 82 39 chr1 14348766 14349556 -267844108 + L1MC4 LINE L1 7219 8042 0 838 278 62 0 chr1 14349568 14349795 -267843869 + MIR SINE MIR 5 245 -17 694 265 158 56 chr1 14350407 14350574 -267843090 - L2 LINE L2 -415 2899 2750 1617 162 7 45 chr1 14350574 14350882 -267842782 - AluJb SINE Alu -16 296 1 694 265 158 56 chr1 14350882 14351125 -267842539 - L2 LINE L2 -564 2750 2447 514 301 61 25 chr1 14352192 14352388 -267841276 + MIR SINE MIR 6 208 -54 467 103 26 0 chr1 14352716 14352794 -267840870 + (TGGA)n Simple_repeat Simple_repeat 1 80 0 363 261 120 0 chr1 14353170 14353262 -267840402 + MIR SINE MIR 29 131 -131 328 349 28 60 chr1 14353326 14353575 -267840089 - MIR SINE MIR 0 262 22 1052 228 114 30 chr1 14353620 14354070 -267839594 + MLT1E LTR MaLR 54 593 0 858 209 40 79 chr1 14354070 14354347 -267839317 - L1ME3A LINE L1 -24 6146 5881 314 287 11 0 chr1 14354574 14354661 -267839003 + MIR3 SINE MIR 68 155 -53 239 333 21 50 chr1 14355400 14355541 -267838123 + L2 LINE L2 2805 2941 -331 2626 183 22 8 chr1 14355662 14356164 -267837500 - L1MB7 LINE L1 -2 6182 5674 279 265 52 52 chr1 14356181 14356317 -267837347 + L2 LINE L2 3159 3294 -19 413 268 21 21 chr1 14356418 14356442 -267837222 - L1MA10 LINE L1 -30 6304 6281 2941 240 43 21 chr1 14356442 14357278 -267836386 - L1ME1 LINE L1 -45 6190 5337 4738 265 75 27 chr1 14357281 14358700 -267834964 - L1ME1 LINE L1 -2703 3512 2162 1131 156 80 25 chr1 14358700 14358899 -267834765 + MER6B DNA MER2_type 1 210 0 4738 265 75 27 chr1 14358899 14360022 -267833642 - L1ME1 LINE L1 -4053 2162 793 495 0 0 0 chr1 14360022 14360077 -267833587 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 4738 265 75 27 chr1 14360077 14360875 -267832789 - L1ME1 LINE L1 -5422 793 34 26 50 0 0 chr1 14361338 14361378 -267832286 + AT_rich Low_complexity Low_complexity 1 40 0 253 250 106 29 chr1 14361842 14361946 -267831718 + MIR3 SINE MIR 89 200 -8 704 209 0 0 chr1 14363160 14363303 -267830361 + FLAM_A SINE Alu 5 147 0 582 267 77 89 chr1 14363600 14363839 -267829825 - MLT1I LTR MaLR -5 404 171 2196 143 26 37 chr1 14363839 14364218 -267829446 - THE1C LTR MaLR 0 375 1 582 267 77 89 chr1 14364218 14364383 -267829281 - MLT1I LTR MaLR -238 171 5 908 334 18 21 chr1 14365314 14365697 -267827967 - MLT1I LTR MaLR -1 408 27 186 203 0 87 chr1 14366421 14366490 -267827174 + L2 LINE L2 1917 1979 -1335 537 261 30 18 chr1 14366490 14366655 -267827009 + L1M4c LINE L1 1223 1389 -4995 388 261 85 33 chr1 14366668 14366821 -267826843 + L1M4 LINE L1 1357 1517 -5025 2311 279 60 48 chr1 14366822 14368110 -267825554 + L2 LINE L2 1994 3312 -1 2263 105 0 0 chr1 14369433 14369727 -267823937 + AluY SINE Alu 1 294 -17 207 0 0 0 chr1 14369760 14369783 -267823881 + (A)n Simple_repeat Simple_repeat 1 23 0 869 337 14 7 chr1 14369978 14370275 -267823389 - MLT1K LTR MaLR -5 583 285 395 297 27 49 chr1 14370281 14370466 -267823198 - MLT1K LTR MaLR -406 182 2 306 377 0 0 chr1 14371768 14371914 -267821750 + L1MC4a LINE L1 5754 5899 -1909 524 304 163 9 chr1 14371996 14372345 -267821319 + MLT1J LTR MaLR 53 455 -56 22 70 0 0 chr1 14372922 14372965 -267820699 + AT_rich Low_complexity Low_complexity 1 43 0 627 217 112 7 chr1 14373005 14373157 -267820507 - MER58C DNA MER1_type -2 213 46 236 291 145 47 chr1 14373177 14373411 -267820253 - L1ME LINE L1 -335 5835 5579 354 301 26 18 chr1 14373669 14373782 -267819882 + MIR SINE MIR 22 135 -127 4217 68 2 2 chr1 14373883 14374396 -267819268 - L1PA10 LINE L1 0 6168 5656 896 251 84 42 chr1 14374497 14375020 -267818644 - L2 LINE L2 -2 3311 2748 191 277 62 31 chr1 14375021 14375086 -267818578 - L2 LINE L2 -497 2817 2751 2338 107 3 3 chr1 14375095 14375403 -267818261 + AluSx SINE Alu 3 310 -2 237 300 100 18 chr1 14375410 14375520 -267818144 - L2 LINE L2 -481 2833 2715 322 270 36 9 chr1 14375556 14375667 -267817997 - L2 LINE L2 -485 2829 2716 189 0 0 0 chr1 14375690 14375711 -267817953 + (CTGGGG)n Simple_repeat Simple_repeat 1 21 0 351 226 124 1 chr1 14375735 14375839 -267817825 - MLT1F LTR MaLR -250 292 189 260 199 20 27 chr1 14375840 14375986 -267817678 + (CAGAGA)n Simple_repeat Simple_repeat 4 148 0 2492 144 23 61 chr1 14375999 14376212 -267817452 + MSTB LTR MaLR 1 190 -236 2353 116 0 0 chr1 14376212 14376515 -267817149 - AluSx SINE Alu -9 303 1 2492 144 23 61 chr1 14376515 14376744 -267816920 + MSTB LTR MaLR 190 426 0 198 0 0 0 chr1 14376773 14376795 -267816869 + (GA)n Simple_repeat Simple_repeat 2 23 0 633 262 62 41 chr1 14376935 14377179 -267816485 - L2 LINE L2 -656 2658 2410 3358 173 58 5 chr1 14377179 14377993 -267815671 - L1MB5 LINE L1 -213 5961 5112 219 219 24 85 chr1 14378110 14378192 -267815472 + MIR SINE MIR 170 246 -16 2278 107 7 0 chr1 14378627 14378925 -267814739 + AluSx SINE Alu 1 300 -12 602 283 79 96 chr1 14379006 14379204 -267814460 + MLT1L LTR MaLR 46 246 -369 2013 138 0 35 chr1 14379204 14379515 -267814149 + AluSx SINE Alu 1 300 -12 602 283 79 96 chr1 14379515 14379888 -267813776 + MLT1L LTR MaLR 246 607 -8 350 259 26 26 chr1 14379900 14380016 -267813648 - 7SK RNA RNA -70 123 8 207 125 0 0 chr1 14380092 14380132 -267813532 + (GA)n Simple_repeat Simple_repeat 2 41 0 1746 185 27 97 chr1 14380399 14380843 -267812821 - MLT2D LTR ERVL -1 413 1 269 303 0 13 chr1 14381219 14381295 -267812369 + L2 LINE L2 3188 3262 -10 258 358 41 8 chr1 14381427 14381550 -267812114 + MIR SINE MIR 8 134 -128 1262 190 174 22 chr1 14381552 14381900 -267811764 + LTR37A LTR ERV1 1 409 -17 2556 70 0 16 chr1 14381900 14382213 -267811451 - AluSx SINE Alu -4 308 1 1262 190 174 22 chr1 14382213 14382232 -267811432 + LTR37A LTR ERV1 409 424 -2 568 309 99 8 chr1 14382346 14382824 -267810840 + L2 LINE L2 2653 3169 -144 334 276 10 10 chr1 14382911 14383009 -267810655 - L2 LINE L2 -42 3271 3174 2231 113 3 0 chr1 14383363 14383665 -267809999 - AluSx SINE Alu -9 303 1 587 224 32 0 chr1 14383707 14383832 -267809832 - MER5A DNA MER1_type 0 189 61 1007 229 76 8 chr1 14383843 14384105 -267809559 - MER33 DNA MER1_type -36 288 9 291 196 0 0 chr1 14384207 14384258 -267809406 - MER5A DNA MER1_type -138 51 1 387 284 139 15 chr1 14384263 14384464 -267809200 + HAL1 LINE L1 2282 2507 0 238 261 45 11 chr1 14385189 14385277 -267808387 + L1ME4a LINE L1 5656 5746 -375 409 190 13 0 chr1 14385278 14385357 -267808307 - L2 LINE L2 -12 3301 3222 267 208 0 0 chr1 14385519 14385572 -267808092 + MLT1K LTR MaLR 5 57 -531 255 273 246 0 chr1 14385652 14385762 -267807902 + MER91C DNA MER1_type 2 138 -2 277 212 45 15 chr1 14385988 14386054 -267807610 + LTR67 LTR ERVL 485 552 -5 335 240 83 0 chr1 14386216 14386312 -267807352 + L1ME4a LINE L1 6002 6105 -16 1022 173 6 11 chr1 14386320 14386499 -267807165 - AluSc SINE Alu 0 309 132 2024 159 0 3 chr1 14386499 14386801 -267806863 - AluSx SINE Alu -11 301 1 248 311 56 31 chr1 14387250 14387411 -267806253 + L3b LINE CR1 1211 1375 -208 255 299 45 52 chr1 14387416 14387550 -267806114 - L2 LINE L2 -1 3271 3139 333 244 144 61 chr1 14387810 14387990 -267805674 + Charlie8 DNA MER1_type 82 276 -2141 302 250 15 0 chr1 14388045 14388113 -267805551 + Charlie8 DNA MER1_type 1360 1428 -989 2232 84 10 3 chr1 14388304 14388602 -267805062 + AluY SINE Alu 1 300 -11 204 266 185 46 chr1 14388686 14388859 -267804805 + MIR SINE MIR 30 226 -36 756 224 27 58 chr1 14388910 14389133 -267804531 + MER20 DNA MER1_type 1 216 -3 1274 103 49 22 chr1 14389731 14390031 -267803633 + AluSc SINE Alu 1 305 0 713 159 0 8 chr1 14390725 14390851 -267802813 - AluY SINE Alu -185 126 2 985 181 6 0 chr1 14390886 14391052 -267802612 - MLT1C LTR MaLR -299 168 2 1177 182 29 0 chr1 14391054 14391263 -267802401 - MER20 DNA MER1_type 0 219 5 1775 201 78 109 chr1 14392065 14392447 -267801217 - LTR1B LTR ERV1 -80 746 395 2243 99 3 3 chr1 14392447 14392741 -267800923 + AluSg SINE Alu 1 294 -16 1775 201 78 109 chr1 14392741 14393075 -267800589 - LTR1B LTR ERV1 -431 395 52 1206 186 32 14 chr1 14396186 14396407 -267797257 - AluJb SINE Alu -12 300 76 259 217 12 36 chr1 14396512 14396595 -267797069 - MER5A DNA MER1_type -108 81 1 657 254 34 54 chr1 14397725 14397930 -267795734 - MER20 DNA MER1_type -2 217 17 478 303 139 29 chr1 14398091 14398401 -267795263 - L2 LINE L2 0 3313 2970 267 103 0 0 chr1 14398526 14398565 -267795099 + (TA)n Simple_repeat Simple_repeat 1 39 0 1850 178 104 31 chr1 14398565 14398980 -267794684 - MLT2B1 LTR ERVL -68 452 8 2190 85 7 7 chr1 14400931 14401213 -267792451 + AluY SINE Alu 1 282 -29 1746 124 3 42 chr1 14401252 14401559 -267792105 + AluSx SINE Alu 3 297 -15 1275 113 0 0 chr1 14401688 14401848 -267791816 - AluSg SINE Alu -150 160 1 718 173 154 0 chr1 14401866 14402028 -267791636 + MER53 DNA DNA 3 189 0 459 256 31 31 chr1 14402564 14402724 -267790940 + MLT1I LTR MaLR 5 164 -245 467 256 141 0 chr1 14402763 14402919 -267790745 + MLT1I LTR MaLR 232 409 0 1683 206 11 11 chr1 14402923 14403287 -267790377 + MLT1A1 LTR MaLR 2 365 0 233 218 23 69 chr1 14403614 14403701 -267789963 + L2 LINE L2 2697 2779 -535 1210 190 5 0 chr1 14403959 14404170 -267789494 - MLT1F LTR MaLR -1 541 330 443 201 45 16 chr1 14404270 14404401 -267789263 - MLT1F LTR MaLR -376 191 5 3152 250 134 19 chr1 14407117 14407561 -267786103 + L1M4 LINE L1 3750 4141 -2005 2479 58 14 0 chr1 14407561 14407854 -267785810 - AluY SINE Alu -14 297 1 3152 250 134 19 chr1 14407854 14408740 -267784924 + L1M4 LINE L1 4141 5234 -912 1908 174 41 33 chr1 14408890 14409281 -267784383 + MSTD LTR MaLR 1 394 -2 214 280 0 0 chr1 14409327 14409377 -267784287 + MIR SINE MIR 69 118 -144 962 205 68 0 chr1 14410411 14410616 -267783048 - MER20 DNA MER1_type 0 219 1 286 288 0 0 chr1 14410692 14410772 -267782892 - L2 LINE L2 -1 3312 3233 16293 161 32 4 chr1 14410962 14413637 -267780027 + L1M1 LINE L1 13 2763 -4802 520 196 29 0 chr1 14413644 14413746 -267779918 - L1M1 LINE L1 -6160 1405 1301 477 180 40 0 chr1 14413779 14413879 -267779785 + L1M1 LINE L1 3785 3888 -3677 1500 147 143 0 chr1 14414071 14414206 -267779458 - AluJb SINE Alu -7 295 181 206 0 69 0 chr1 14414206 14414235 -267779429 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1500 147 143 0 chr1 14414235 14414357 -267779307 - AluJb SINE Alu -121 181 1 226 284 230 37 chr1 14414727 14415023 -267778641 + L2 LINE L2 2915 3267 -5 189 298 18 0 chr1 14415381 14415438 -267778226 - MIR3 SINE MIR -3 205 148 218 196 89 0 chr1 14415505 14415561 -267778103 - MIR SINE MIR -166 96 36 297 261 85 21 chr1 14416421 14416574 -267777090 + L1M1 LINE L1 5114 5274 -2291 1085 113 0 0 chr1 14416574 14416715 -267776949 + AluJb SINE Alu 1 141 -171 260 283 114 61 chr1 14416759 14417137 -267776527 + L1M1 LINE L1 5260 5657 -1908 822 253 116 76 chr1 14417573 14417848 -267775816 + L1ME3 LINE L1 5984 6246 -1335 2086 140 7 0 chr1 14417848 14418141 -267775523 - AluSx SINE Alu -17 295 1 822 253 116 76 chr1 14418141 14418814 -267774850 + L1ME3 LINE L1 6246 7004 -577 1984 200 34 122 chr1 14418814 14419485 -267774179 - LTR9 LTR ERV1 0 612 1 822 253 116 76 chr1 14419485 14419745 -267773919 + L1ME3 LINE L1 7004 7252 -329 209 128 21 21 chr1 14420532 14420579 -267773085 + MIR SINE MIR 60 106 -156 1011 237 57 65 chr1 14420582 14420621 -267773043 - MLT2C2 LTR ERVL -2 462 424 441 0 0 0 chr1 14420621 14420670 -267772994 + (TG)n Simple_repeat Simple_repeat 2 50 0 1011 237 57 65 chr1 14420670 14420997 -267772667 - MLT2C2 LTR ERVL -40 424 99 1704 112 7 19 chr1 14420997 14421266 -267772398 + L1MA1 LINE L1 6029 6294 -8 35 0 0 0 chr1 14421270 14421305 -267772359 + AT_rich Low_complexity Low_complexity 1 35 0 2909 86 0 10 chr1 14421316 14421723 -267771941 + L1PB1 LINE L1 5749 6151 0 539 195 18 0 chr1 14421741 14421854 -267771810 - MLT2B2 LTR ERVL -400 115 1 420 289 21 14 chr1 14421860 14422002 -267771662 + MIR SINE MIR 109 251 -11 531 251 89 11 chr1 14422164 14422355 -267771309 - L1ME LINE L1 -393 5769 5564 286 272 48 51 chr1 14422542 14422712 -267770952 + MIR SINE MIR 5 175 -63 1093 214 105 40 chr1 14423441 14423792 -267769872 - MLT1A2 LTR MaLR 0 374 1 240 234 149 70 chr1 14423793 14423994 -267769670 - L2 LINE L2 -85 3228 3012 380 307 111 16 chr1 14424468 14424657 -267769007 - MIR SINE MIR -36 226 20 4235 140 19 107 chr1 14424840 14426398 -267767266 - pTR5 LTR ERV1 -1 2605 1524 340 255 29 0 chr1 14426953 14427055 -267766609 + MER103 DNA DNA 15 119 -47 266 206 79 16 chr1 14427355 14427418 -267766246 - MER103 DNA DNA -49 117 51 207 250 21 0 chr1 14428506 14428554 -267765110 + MIR SINE MIR 30 78 -130 193 182 0 0 chr1 14428896 14428929 -267764735 - MIR SINE MIR -12 250 218 665 305 58 38 chr1 14428989 14429425 -267764239 + MLT1K LTR MaLR 69 582 -6 360 269 39 0 chr1 14429431 14429535 -267764129 + MIR SINE MIR 85 192 -70 277 336 66 16 chr1 14429638 14429760 -267763904 - MIR SINE MIR -126 136 9 341 188 229 0 chr1 14429818 14429914 -267763750 - MER91C DNA MER1_type 0 140 23 421 291 127 12 chr1 14430913 14431157 -267762507 + L2 LINE L2 3042 3313 0 269 302 23 0 chr1 14431559 14431645 -267762019 - L2 LINE L2 -2 3270 3183 571 311 11 6 chr1 14431878 14432058 -267761606 + MIR SINE MIR 61 241 -21 189 0 0 0 chr1 14432149 14432170 -267761494 + (CA)n Simple_repeat Simple_repeat 2 22 0 280 280 9 28 chr1 14432171 14432278 -267761386 + (TA)n Simple_repeat Simple_repeat 1 105 0 2395 103 50 8 chr1 14433180 14433539 -267760125 - THE1C LTR MaLR 0 375 2 189 171 0 0 chr1 14434384 14434419 -267759245 + (CAT)n Simple_repeat Simple_repeat 3 37 0 245 312 29 0 chr1 14434425 14434515 -267759149 - MIR SINE MIR -73 135 60 712 199 114 5 chr1 14434527 14434728 -267758936 + L2 LINE L2 2755 2977 -337 271 293 0 0 chr1 14435101 14435176 -267758488 + L2 LINE L2 3234 3308 -5 215 357 135 0 chr1 14435948 14436133 -267757531 - MIR SINE MIR -16 246 37 2186 186 46 72 chr1 14436201 14436770 -267756894 + MLT2B3 LTR ERVL 1 554 0 2924 72 5 10 chr1 14437307 14437698 -267755966 - L1PA8 LINE L1 -2 6170 5782 216 174 0 43 chr1 14437702 14437754 -267755910 + (TATATG)n Simple_repeat Simple_repeat 1 49 0 1176 239 32 13 chr1 14437853 14438162 -267755502 - L1ME2 LINE L1 -9 6155 5841 1241 204 37 102 chr1 14438177 14438328 -267755336 + MLT1A2 LTR MaLR 9 168 -206 2130 117 0 7 chr1 14438328 14438627 -267755037 + AluSx SINE Alu 1 297 -15 1241 204 37 102 chr1 14438627 14438858 -267754806 + MLT1A2 LTR MaLR 168 366 -8 403 248 4 54 chr1 14438866 14439006 -267754658 - L1ME2 LINE L1 -336 5826 5687 395 304 152 17 chr1 14440101 14440397 -267753267 + LTR16C LTR ERVL 140 475 -16 180 244 22 0 chr1 14440452 14440497 -267753167 + MIR SINE MIR 110 155 -107 267 317 49 32 chr1 14440623 14440869 -267752795 + L1ME4a LINE L1 4410 4659 -1487 1399 101 0 0 chr1 14441078 14441296 -267752368 + AluSc SINE Alu 105 322 0 617 292 90 17 chr1 14441597 14441885 -267751779 + L1ME4a LINE L1 5393 5701 -420 1997 137 0 14 chr1 14441993 14442318 -267751346 - AluSx SINE Alu 0 321 1 21 0 0 0 chr1 14442396 14442417 -267751247 + AT_rich Low_complexity Low_complexity 1 21 0 314 289 93 25 chr1 14442426 14442630 -267751034 + L1ME4a LINE L1 5899 6116 -5 535 342 18 9 chr1 14443133 14443355 -267750309 - MIR SINE MIR -17 245 22 257 265 29 15 chr1 14443670 14443738 -267749926 - L2 LINE L2 -2 3270 3202 205 273 239 30 chr1 14443762 14444092 -267749572 + L2 LINE L2 2246 2644 -670 1602 80 5 0 chr1 14445238 14445451 -267748213 - L1P LINE L1 -5932 214 1 7112 122 15 13 chr1 14445452 14447123 -267746541 + L1MA3 LINE L1 4628 6305 0 833 294 32 38 chr1 14447289 14447732 -267745932 - L2 LINE L2 -19 3294 2855 775 229 66 5 chr1 14447732 14448057 -267745607 - MSTD LTR MaLR 0 396 1 469 299 91 12 chr1 14448065 14448306 -267745358 - L2 LINE L2 -508 2806 2547 521 249 306 10 chr1 14448308 14448706 -267744958 + L2 LINE L2 2029 2544 -770 899 176 60 11 chr1 14449668 14449850 -267743814 - MER20 DNA MER1_type 0 219 29 355 329 35 6 chr1 14450913 14451083 -267742581 - MIR SINE MIR -39 223 49 361 274 17 8 chr1 14451346 14451463 -267742201 - MIR SINE MIR -117 145 28 364 242 74 0 chr1 14452056 14452151 -267741513 - MIR3 SINE MIR -11 197 96 701 296 30 4 chr1 14452234 14452467 -267741197 - MLT1K LTR MaLR -12 576 338 1037 287 122 45 chr1 14453231 14453678 -267739986 + L2 LINE L2 2311 2722 -591 1096 200 5 5 chr1 14453678 14453883 -267739781 + MER3 DNA MER1_type 5 209 0 1037 287 122 45 chr1 14453883 14454346 -267739318 + L2 LINE L2 2722 3293 -20 235 340 74 37 chr1 14454583 14454745 -267738919 + L2 LINE L2 3103 3270 -2 755 170 28 55 chr1 14454758 14454940 -267738724 - MER45A DNA AcHobo -1 177 1 191 338 127 0 chr1 14455176 14455318 -267738346 + L2 LINE L2 3112 3271 -1 180 0 0 0 chr1 14455417 14455437 -267738227 + (TA)n Simple_repeat Simple_repeat 2 21 0 677 255 69 39 chr1 14455624 14455828 -267737836 - MIR SINE MIR -50 212 3 424 289 101 23 chr1 14456051 14456269 -267737395 - MIR SINE MIR -12 250 16 617 300 69 4 chr1 14457305 14457538 -267736126 - MIR SINE MIR 0 262 15 208 149 81 0 chr1 14457689 14457763 -267735901 + (TA)n Simple_repeat Simple_repeat 2 81 0 30 0 0 0 chr1 14457839 14457869 -267735795 + AT_rich Low_complexity Low_complexity 1 30 0 428 125 68 11 chr1 14457874 14458141 -267735523 + (TA)n Simple_repeat Simple_repeat 1 282 0 192 319 195 25 chr1 14458871 14459153 -267734511 - L2 LINE L2 -27 3245 2916 1002 303 44 26 chr1 14459459 14459848 -267733816 + LTR16C LTR ERVL 96 491 0 248 284 0 25 chr1 14460233 14460314 -267733350 + (TCCA)n Simple_repeat Simple_repeat 1 79 0 644 118 0 8 chr1 14460321 14460440 -267733224 + (TTCC)n Simple_repeat Simple_repeat 2 119 0 312 120 0 0 chr1 14460442 14460492 -267733172 + (TCCA)n Simple_repeat Simple_repeat 3 52 0 438 69 0 0 chr1 14461184 14461242 -267732422 + (GA)n Simple_repeat Simple_repeat 1 58 0 969 113 69 25 chr1 14461260 14461419 -267732245 - THE1B LTR MaLR 0 364 199 1449 166 4 0 chr1 14461523 14461758 -267731906 + MSTB LTR MaLR 191 426 0 295 29 0 0 chr1 14462041 14462075 -267731589 - MLT2C1 LTR ERVL 0 397 364 354 98 0 0 chr1 14462119 14462170 -267731494 + (GA)n Simple_repeat Simple_repeat 2 52 0 1064 204 104 36 chr1 14462200 14462450 -267731214 - MLT2B1 LTR ERVL -91 429 163 2028 132 0 0 chr1 14462472 14462778 -267730886 - AluSx SINE Alu 0 306 1 347 221 0 0 chr1 14463379 14463447 -267730217 - Charlie8 DNA MER1_type -2 2415 2348 2378 71 0 0 chr1 14463488 14463793 -267729871 - AluY SINE Alu 0 305 1 2330 105 0 0 chr1 14464094 14464389 -267729275 + AluSx SINE Alu 3 297 -15 1222 164 263 54 chr1 14465321 14465675 -267727989 - MLT1F1 LTR MaLR 0 567 140 281 114 0 0 chr1 14465951 14465995 -267727669 - MLT1F1 LTR MaLR -489 53 10 473 188 0 21 chr1 14466679 14466775 -267726889 - MLT1F1 LTR MaLR 0 567 474 239 328 45 52 chr1 14466824 14466958 -267726706 + L2 LINE L2 3173 3305 -8 423 318 125 34 chr1 14467086 14467336 -267726328 - L1ME3A LINE L1 -286 5884 5658 2302 118 0 0 chr1 14467336 14467641 -267726023 + AluSx SINE Alu 1 305 -7 423 318 125 34 chr1 14467641 14467943 -267725721 - L1ME3A LINE L1 -512 5658 5266 331 276 77 82 chr1 14468094 14468351 -267725313 - L1ME3A LINE L1 -1440 4706 4449 2218 105 3 16 chr1 14468351 14468657 -267725007 - AluY SINE Alu -7 304 3 331 276 77 82 chr1 14468657 14469068 -267724596 - L1ME3A LINE L1 -1697 4449 4064 719 218 39 22 chr1 14469204 14469383 -267724281 - HERVL74 LTR ERVL -4115 1570 1389 182 36 0 0 chr1 14469394 14469422 -267724242 + L2 LINE L2 3286 3313 0 264 59 0 0 chr1 14469787 14469821 -267723843 + (TG)n Simple_repeat Simple_repeat 2 35 0 605 306 0 0 chr1 14470015 14470185 -267723479 + MER117 DNA MER1_type 1 170 -27 2318 99 0 13 chr1 14471169 14471473 -267722191 - AluSq SINE Alu -12 301 2 362 250 143 7 chr1 14471474 14471511 -267722153 - MLT1H LTR MaLR -379 170 139 1052 244 72 26 chr1 14471511 14471856 -267721808 + MLT1A1 LTR MaLR 5 365 0 362 250 143 7 chr1 14471856 14471958 -267721706 - MLT1H LTR MaLR -410 139 12 2188 95 0 7 chr1 14472862 14473156 -267720508 - AluSg SINE Alu -14 296 5 469 267 130 31 chr1 14473318 14473610 -267720054 + LTR33 LTR ERVL 50 370 -151 1411 161 88 102 chr1 14474239 14474275 -267719389 - MER66A LTR ERV1 -28 450 415 2734 92 3 14 chr1 14474275 14474643 -267719021 - THE1B LTR MaLR 0 364 1 1411 161 88 102 chr1 14474643 14475047 -267718617 - MER66A LTR ERV1 -63 415 97 300 188 0 31 chr1 14475211 14475275 -267718389 + MIR SINE MIR 201 262 0 199 372 47 31 chr1 14475793 14475922 -267717742 + MIR3 SINE MIR 30 160 -48 696 283 121 41 chr1 14475922 14476237 -267717427 + MER102b DNA MER1_type 1 340 -1 2160 131 20 7 chr1 14476248 14476554 -267717110 - AluSx SINE Alu -2 310 1 305 221 11 74 chr1 14476628 14476723 -267716941 - MLT1H1 LTR MaLR -13 542 454 361 290 40 0 chr1 14476915 14477039 -267716625 + L1MEd LINE L1 44 172 -5947 1368 286 78 46 chr1 14477128 14477899 -267715765 + L1MEd LINE L1 328 1073 -5056 1714 179 10 7 chr1 14477899 14478196 -267715468 - AluSx SINE Alu -14 298 1 1368 286 78 46 chr1 14478196 14478294 -267715370 + L1MEd LINE L1 1073 1166 -4963 1696 218 23 45 chr1 14478294 14478808 -267714856 + MLT1D LTR MaLR 3 505 0 1368 286 78 46 chr1 14478808 14479057 -267714607 + L1MEd LINE L1 1166 1474 -4655 318 179 0 0 chr1 14479038 14479094 -267714570 + HAL1 LINE L1 1600 1655 -852 * 2074 120 0 17 chr1 14479097 14479389 -267714275 - AluSx SINE Alu -21 291 5 242 281 104 54 chr1 14480110 14480533 -267713131 + L1M4 LINE L1 4160 4603 -1543 21 0 0 0 chr1 14480537 14480558 -267713106 + AT_rich Low_complexity Low_complexity 1 21 0 204 155 42 0 chr1 14480733 14480804 -267712860 + (TA)n Simple_repeat Simple_repeat 1 74 0 249 33 0 0 chr1 14481033 14481063 -267712601 + (TG)n Simple_repeat Simple_repeat 2 31 0 2100 136 0 3 chr1 14481162 14481457 -267712207 + AluSx SINE Alu 1 294 -18 25 31 0 0 chr1 14481633 14481665 -267711999 + AT_rich Low_complexity Low_complexity 1 32 0 198 321 57 29 chr1 14481678 14481818 -267711846 - L2 LINE L2 -680 2634 2491 632 243 105 43 chr1 14482002 14482278 -267711386 + LTR16C LTR ERVL 185 477 -14 2164 132 0 0 chr1 14482874 14483169 -267710495 + AluSx SINE Alu 1 295 -17 27 0 0 0 chr1 14483176 14483203 -267710461 + AT_rich Low_complexity Low_complexity 1 27 0 713 157 0 0 chr1 14483235 14483337 -267710327 + FLAM_C SINE Alu 9 110 -33 570 195 0 111 chr1 14583367 14583448 -267610216 + Charlie2 DNA MER1_type 2694 2744 -118 2096 91 3 10 chr1 14583448 14583746 -267609918 - AluSg SINE Alu -14 296 1 570 195 0 111 chr1 14583746 14583854 -267609810 + Charlie2 DNA MER1_type 2744 2862 0 293 231 264 33 chr1 14584068 14584189 -267609475 - MIR SINE MIR -110 152 4 596 265 43 33 chr1 14584192 14584536 -267609128 - L1M4 LINE L1 -715 5463 5121 23 33 0 0 chr1 14584674 14584704 -267608960 + AT_rich Low_complexity Low_complexity 1 30 0 871 163 0 68 chr1 14585364 14585554 -267608110 - FRAM SINE Alu 0 176 1 1713 136 48 48 chr1 14585771 14586065 -267607599 + AluSq SINE Alu 1 294 -19 2156 106 0 0 chr1 14586154 14586446 -267607218 + AluSc SINE Alu 1 292 -17 192 200 0 0 chr1 14587886 14587926 -267605738 + (CA)n Simple_repeat Simple_repeat 1 40 0 2156 108 0 0 chr1 14588184 14588479 -267605185 + AluSg SINE Alu 1 295 -15 271 167 0 0 chr1 14588668 14588716 -267604948 - AluSp/q SINE Alu -1 302 255 2072 68 0 8 chr1 14588908 14589174 -267604490 - AluY SINE Alu -18 293 30 1772 167 0 0 chr1 14589574 14589868 -267603796 + AluSx SINE Alu 1 294 -18 1117 206 61 4 chr1 14590298 14590545 -267603119 + MER31B LTR ERV1 206 466 0 2015 119 10 0 chr1 14590566 14590859 -267602805 + AluSq SINE Alu 1 296 -17 285 327 20 65 chr1 14591402 14591555 -267602109 - L2 LINE L2 -4 3309 3164 2020 109 7 0 chr1 14591572 14591856 -267601808 + AluSx SINE Alu 26 311 -1 2076 97 3 13 chr1 14591920 14592220 -267601444 + AluSc SINE Alu 1 297 -12 349 283 168 0 chr1 14592326 14592439 -267601225 + L2 LINE L2 3179 3310 -3 636 165 0 0 chr1 14592918 14593021 -267600643 + AluSq/x SINE Alu 4 106 -207 1052 121 24 0 chr1 14593121 14593286 -267600378 + AluY SINE Alu 143 311 0 198 275 62 0 chr1 14594355 14594435 -267599229 + MIR SINE MIR 59 143 -119 2073 108 10 0 chr1 14595101 14595397 -267598267 - AluSx SINE Alu -13 299 1 214 298 60 12 chr1 14595951 14596035 -267597629 + L2 LINE L2 3150 3237 -35 372 257 126 14 chr1 14596421 14596635 -267597029 + L2 LINE L2 2844 3081 -232 2436 148 117 40 chr1 14596651 14596902 -267596762 + MLT2B3 LTR ERVL 1 231 -323 2373 58 0 3 chr1 14596902 14597197 -267596467 - AluY SINE Alu -17 294 1 2436 148 117 40 chr1 14597197 14597423 -267596241 + MLT2B3 LTR ERVL 231 515 -39 799 88 66 0 chr1 14597425 14597651 -267596013 + (TCTA)n Simple_repeat Simple_repeat 1 241 0 401 46 6 0 chr1 14597658 14597715 -267595949 + MLT2B3 LTR ERVL 462 554 0 459 320 46 20 chr1 14597731 14597928 -267595736 + L2 LINE L2 3110 3311 -2 392 222 9 0 chr1 14597928 14598036 -267595628 + (TGGG)n Simple_repeat Simple_repeat 4 112 0 1875 91 0 0 chr1 14598913 14599156 -267594508 + AluSq SINE Alu 3 245 -68 819 147 16 0 chr1 14599156 14599285 -267594379 + AluSg/x SINE Alu 175 305 -7 257 274 177 0 chr1 14599469 14599593 -267594071 - L2 LINE L2 0 3313 3168 2402 206 153 0 chr1 14599699 14600268 -267593396 + MER67B LTR ERV1 3 658 -3 1734 169 0 0 chr1 14600700 14600984 -267592680 + AluJb SINE Alu 1 284 -28 1902 151 27 15 chr1 14601051 14601388 -267592276 - L1MB7 LINE L1 -23 6161 5821 27 0 0 0 chr1 14601393 14601420 -267592244 + AT_rich Low_complexity Low_complexity 1 27 0 946 135 0 0 chr1 14601441 14601582 -267592082 - AluJb SINE Alu -171 141 1 1833 181 24 37 chr1 14601589 14601722 -267591942 - L1MB7 LINE L1 -364 5820 5687 1852 155 0 0 chr1 14601722 14602019 -267591645 - AluJb SINE Alu -15 297 1 1833 181 24 37 chr1 14602019 14602266 -267591398 - L1MB7 LINE L1 -497 5687 5445 1459 111 11 89 chr1 14603240 14603311 -267590353 - Tigger7 DNA MER2_type 0 2491 2416 2313 102 0 3 chr1 14603311 14603624 -267590040 + AluSx SINE Alu 1 312 0 1459 111 11 89 chr1 14603624 14603822 -267589842 - Tigger7 DNA MER2_type -75 2416 2243 326 186 71 106 chr1 14603929 14603965 -267589699 - MER5C DNA MER1_type -200 124 88 2224 100 0 0 chr1 14603965 14604266 -267589398 + AluSq SINE Alu 1 301 -12 326 186 71 106 chr1 14604266 14604342 -267589322 - MER5C DNA MER1_type -236 88 16 293 347 140 0 chr1 14604531 14604724 -267588940 + L2 LINE L2 2815 3034 -279 1538 162 79 7 chr1 14604755 14605046 -267588618 - LTR10B LTR ERV1 0 505 176 1005 192 49 5 chr1 14605142 14605345 -267588319 + MER58A DNA MER1_type 5 216 -8 414 260 36 68 chr1 14605378 14605570 -267588094 + L2 LINE L2 3111 3296 -17 2970 122 30 28 chr1 14605571 14605927 -267587737 - L1MB2 LINE L1 -2 6169 5810 2199 97 10 0 chr1 14605927 14606235 -267587429 + AluSp SINE Alu 1 311 -2 2970 122 30 28 chr1 14606235 14606378 -267587286 - L1MB2 LINE L1 -361 5810 5669 676 36 12 0 chr1 14607150 14607234 -267586430 - AluY SINE Alu -16 295 211 1150 230 152 12 chr1 14607237 14607720 -267585944 + MLT1E1 LTR MaLR 4 566 -27 2229 98 3 3 chr1 14607894 14608199 -267585465 - AluSp SINE Alu -8 305 1 1890 128 10 10 chr1 14608199 14608495 -267585169 - AluJo SINE Alu -16 296 1 1035 201 45 59 chr1 14608496 14608554 -267585110 - L1ME1 LINE L1 -4 6174 6117 434 18 18 0 chr1 14608554 14608609 -267585055 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 1035 201 45 59 chr1 14608609 14608902 -267584762 - L1ME1 LINE L1 -61 6117 5798 289 180 0 16 chr1 14608909 14608970 -267584694 + MIR SINE MIR 81 140 -68 1651 166 20 7 chr1 14609574 14609869 -267583795 - AluJb SINE Alu -13 299 1 1281 103 5 0 chr1 14609900 14610085 -267583579 + AluSg/x SINE Alu 119 304 -6 203 346 39 23 chr1 14610675 14610805 -267582859 - MIR3 SINE MIR -6 202 71 2128 118 0 7 chr1 14610806 14611110 -267582554 + AluSx SINE Alu 1 302 -10 878 196 85 88 chr1 14611144 14611450 -267582214 - MLT1J LTR MaLR 0 511 207 2018 103 0 0 chr1 14611458 14611731 -267581933 + AluSx SINE Alu 10 282 -30 33 43 0 0 chr1 14611738 14611785 -267581879 + AT_rich Low_complexity Low_complexity 1 47 0 606 274 30 20 chr1 14611785 14611986 -267581678 - MLT1J LTR MaLR -302 209 7 565 128 0 0 chr1 14612060 14612138 -267581526 + MER30B DNA MER1_type 1 78 -112 1304 108 220 17 chr1 14612139 14612394 -267581270 + AluSg1 SINE Alu 1 302 0 1045 107 31 6 chr1 14612394 14612553 -267581111 + MER30B DNA MER1_type 68 230 0 325 215 174 56 chr1 14612737 14612881 -267580783 - MIR SINE MIR -41 221 61 1053 99 0 0 chr1 14612882 14613024 -267580640 - AluSg/x SINE Alu -15 297 156 2352 73 0 0 chr1 14613289 14613589 -267580075 + AluY SINE Alu 1 300 -11 2056 121 0 3 chr1 14613600 14613906 -267579758 + AluSq SINE Alu 1 305 -8 1823 81 0 4 chr1 14613907 14614142 -267579522 + AluY SINE Alu 1 234 -77 940 172 0 0 chr1 14614921 14615072 -267578592 + AluJb SINE Alu 133 283 -29 685 219 19 32 chr1 14615128 14615283 -267578381 - MIR SINE MIR -21 241 89 2069 97 7 3 chr1 14615326 14615615 -267578049 + AluSx SINE Alu 1 290 -22 2247 100 3 0 chr1 14615639 14615949 -267577715 + AluSp SINE Alu 1 311 -2 409 169 12 0 chr1 14616008 14616091 -267577573 - AluS SINE Alu 0 310 227 569 115 0 0 chr1 14616092 14616170 -267577494 - AluSq/x SINE Alu -187 126 49 341 316 45 65 chr1 14616194 14616274 -267577390 + L2 LINE L2 3121 3201 -71 2164 110 0 7 chr1 14616274 14616584 -267577080 - AluSx SINE Alu -4 308 1 1798 158 0 3 chr1 14616584 14616880 -267576784 - AluSx SINE Alu -16 296 1 341 316 45 65 chr1 14616880 14616953 -267576711 + L2 LINE L2 3199 3272 0 2067 110 7 10 chr1 14617257 14617565 -267576099 + AluSg1 SINE Alu 2 308 -1 1166 170 50 117 chr1 14617580 14617665 -267575999 - MER82 DNA MER2_type -314 339 250 821 154 23 0 chr1 14617665 14617795 -267575869 + FLAM_C SINE Alu 1 133 0 1166 170 50 117 chr1 14617795 14618050 -267575614 - MER82 DNA MER2_type -403 250 22 2222 92 0 10 chr1 14618052 14618356 -267575308 + AluY SINE Alu 1 301 -10 1095 263 92 35 chr1 14618458 14618884 -267574780 + Charlie2b DNA MER1_type 221 670 -2112 1721 161 10 0 chr1 14618970 14619262 -267574402 + AluJo SINE Alu 1 295 -17 478 176 155 7 chr1 14619267 14619409 -267574255 + Charlie2a DNA MER1_type 1486 1648 -1214 2185 45 0 31 chr1 14619422 14619760 -267573904 + AluY SINE Alu 1 329 0 580 240 0 0 chr1 14619775 14619896 -267573768 + FLAM_A SINE Alu 12 132 -10 2264 82 16 0 chr1 14619910 14620214 -267573450 + AluSp SINE Alu 5 313 0 670 235 50 0 chr1 14620218 14620397 -267573267 + Charlie2a DNA MER1_type 1642 1829 -1033 1836 137 42 118 chr1 14620400 14620483 -267573181 + MER44D DNA MER2_type 2 90 -2397 1437 163 41 41 chr1 14620483 14620778 -267572886 + AluJb SINE Alu 1 295 -17 1836 137 42 118 chr1 14620778 14621125 -267572539 + MER44D DNA MER2_type 90 454 -151 1843 142 127 43 chr1 14621138 14621555 -267572109 - LTR10A LTR ERV1 -61 548 97 11824 156 12 20 chr1 14621599 14624774 -267568890 - Harlequin LTR ERV1 -2 6647 1804 267 274 167 0 chr1 14624781 14624865 -267568799 + LTR8 LTR ERV1 160 257 -434 5611 95 18 39 chr1 14624865 14625510 -267568154 - HERV17 LTR ERV1 -5178 1718 1145 2272 69 0 3 chr1 14625510 14625799 -267567865 - AluY SINE Alu -23 288 1 5611 95 18 39 chr1 14625799 14626232 -267567432 - HERV17 LTR ERV1 -5751 1145 704 308 184 39 0 chr1 14626232 14626335 -267567329 + CT-rich Low_complexity Low_complexity 2 108 0 212 186 17 0 chr1 14626369 14626428 -267567236 + CT-rich Low_complexity Low_complexity 2 61 0 1298 168 207 44 chr1 14626677 14627064 -267566600 - LTR7 LTR ERV1 0 450 1 3340 120 14 42 chr1 14627064 14627637 -267566027 - HERVH LTR ERV1 0 7713 7157 * 12186 95 5 1 chr1 14627630 14629270 -267564394 - HERVH LTR ERV1 -1697 6016 4370 4284 130 5 88 chr1 14629259 14630064 -267563600 - HERVH LTR ERV1 -3619 4094 3357 * 8129 204 24 36 chr1 14630064 14632943 -267560721 - HERVH LTR ERV1 -3792 2737 1 846 163 111 62 chr1 14632943 14633331 -267560333 - LTR7 LTR ERV1 0 450 1 387 238 117 0 chr1 14633524 14633668 -267559996 - LTR10A-int LTR ERV1 -7420 365 288 1048 204 43 132 chr1 14633674 14634025 -267559639 - LTR10A-int LTR ERV1 -6335 314 1 1695 166 181 55 chr1 14634034 14634521 -267559143 - LTR10A LTR ERV1 -61 548 1 441 125 0 12 chr1 14634521 14634600 -267559064 + Tigger7 DNA MER2_type 2337 2414 -77 401 181 181 29 chr1 14634617 14634642 -267559022 + Tigger7 DNA MER2_type 2371 2391 -100 2024 144 26 15 chr1 14634642 14634913 -267558751 + MER2 DNA MER2_type 2 279 -65 1609 154 24 14 chr1 14634913 14635205 -267558459 - AluSx SINE Alu -17 295 1 2024 144 26 15 chr1 14635205 14635272 -267558392 + MER2 DNA MER2_type 279 344 0 401 181 181 29 chr1 14635272 14635351 -267558313 + Tigger7 DNA MER2_type 2391 2491 0 985 214 96 102 chr1 14635353 14635876 -267557788 + Charlie2 DNA MER1_type 1833 2354 -508 2280 84 3 0 chr1 14635876 14636172 -267557492 + AluSp SINE Alu 1 297 -16 985 214 96 102 chr1 14636172 14636208 -267557456 + Charlie2 DNA MER1_type 2354 2389 -473 555 317 77 5 chr1 14636360 14636581 -267557083 - MIR SINE MIR 0 262 26 2140 110 7 0 chr1 14636594 14636904 -267556760 - AluSp SINE Alu -1 312 1 2213 102 0 3 chr1 14638563 14638876 -267554788 - AluSp SINE Alu -1 312 1 357 211 102 18 chr1 14639022 14639188 -267554476 - L1MEd LINE L1 -5249 870 691 295 309 27 9 chr1 14639216 14639326 -267554338 - L1MEd LINE L1 -5437 682 571 705 188 161 61 chr1 14639654 14639915 -267553749 - MER113 DNA MER1_type? -116 405 119 384 303 0 0 chr1 14639952 14640041 -267553623 - L1MC4 LINE L1 -1339 6703 6615 1841 172 0 0 chr1 14640045 14640342 -267553322 + AluJo SINE Alu 1 297 -15 1269 219 130 33 chr1 14640746 14641107 -267552557 + MSTD LTR MaLR 1 396 0 2478 80 0 3 chr1 14641312 14641613 -267552051 - AluSg SINE Alu -10 300 1 1951 70 117 0 chr1 14642094 14642377 -267551287 - AluSp SINE Alu 0 313 1 677 280 52 13 chr1 14642693 14642925 -267550739 + MIR SINE MIR 7 247 -15 2113 49 53 0 chr1 14643435 14643712 -267549952 - AluY SINE Alu 0 310 21 1331 245 136 21 chr1 14643763 14644249 -267549415 + MLT1F LTR MaLR 1 542 0 2392 99 0 0 chr1 14644300 14644604 -267549060 + AluY SINE Alu 2 305 -6 537 260 32 26 chr1 14644725 14644879 -267548785 + MIR SINE MIR 52 206 -56 2206 123 0 13 chr1 14645071 14645373 -267548291 + AluSq SINE Alu 1 298 -15 181 333 11 11 chr1 14646739 14646832 -267546832 + L2 LINE L2 2621 2713 -601 2367 76 10 3 chr1 14646835 14647125 -267546539 + AluSc SINE Alu 1 292 -17 2134 88 88 3 chr1 14647125 14647409 -267546255 + AluSq SINE Alu 1 308 -5 829 163 0 34 chr1 14647418 14647565 -267546099 + FLAM_C SINE Alu 1 142 -1 230 257 220 37 chr1 14647565 14647783 -267545881 + L2 LINE L2 2706 2963 -351 374 229 52 0 chr1 14647808 14647904 -267545760 + MER45A DNA AcHobo 77 177 -1 243 319 97 19 chr1 14647905 14648121 -267545543 + L2 LINE L2 2952 3184 -129 1904 152 3 19 chr1 14648554 14648870 -267544794 - AluJo SINE Alu -1 311 1 573 225 0 9 chr1 14649712 14649823 -267543841 + FLAM_C SINE Alu 6 115 -28 310 308 29 96 chr1 14649832 14650072 -267543592 - MIR SINE MIR -33 229 6 305 224 0 0 chr1 14650286 14650344 -267543320 + MER91B DNA MER1_type 3 60 -130 1634 232 71 63 chr1 14650567 14650669 -267542995 - MLT1F LTR MaLR 0 542 442 2386 101 0 3 chr1 14650669 14650976 -267542688 + AluSq SINE Alu 1 306 -7 1634 232 71 63 chr1 14650976 14651411 -267542253 - MLT1F LTR MaLR -100 442 1 1075 83 0 0 chr1 14651451 14651583 -267542081 + AluSp SINE Alu 1 132 -181 2585 84 0 0 chr1 14651587 14651898 -267541766 + AluSp SINE Alu 3 313 0 342 335 63 6 chr1 14652344 14652502 -267541162 + MIR SINE MIR 47 213 -49 278 71 24 0 chr1 14653598 14653640 -267540024 + MER21B LTR ERV1 619 661 -202 1974 101 87 7 chr1 14653664 14653952 -267539712 + AluSx SINE Alu 1 311 -1 696 232 49 22 chr1 14654263 14654487 -267539177 - MER31A LTR ERV1 0 485 256 412 301 30 24 chr1 14654643 14654809 -267538855 - MIR3 SINE MIR -29 179 13 717 182 42 0 chr1 14654834 14654977 -267538687 - MER63 DNA MER1_type -4 1056 908 2316 153 31 27 chr1 14654977 14655117 -267538547 + L1MB5 LINE L1 5690 5828 -346 1531 157 33 62 chr1 14655117 14655422 -267538242 + AluJo SINE Alu 1 296 -16 2316 153 31 27 chr1 14655422 14655727 -267537937 + L1MB5 LINE L1 5828 6137 -37 247 154 0 0 chr1 14656773 14656812 -267536852 + 5S rRNA rRNA 4 42 -79 2377 103 0 3 chr1 14657233 14657535 -267536129 - AluSx SINE Alu -11 301 1 2570 63 0 28 chr1 14658426 14658745 -267534919 - AluY SINE Alu 0 311 2 337 303 56 21 chr1 14658776 14658918 -267534746 - MIR SINE MIR -106 156 10 194 294 59 59 chr1 14659166 14659302 -267534362 + L2 LINE L2 3135 3270 -43 2235 195 68 37 chr1 14660391 14660601 -267533063 + L1MB7 LINE L1 4672 4874 -1300 2559 59 3 3 chr1 14660601 14660904 -267532760 + AluSp SINE Alu 1 303 -10 2235 195 68 37 chr1 14660904 14661588 -267532076 + L1MB7 LINE L1 4874 5605 -569 888 201 0 0 chr1 14661593 14661742 -267531922 + FRAM SINE Alu 5 153 -23 1928 145 17 20 chr1 14661750 14662101 -267531563 + L1MB7 LINE L1 5816 6165 -19 2391 80 0 0 chr1 14662218 14662506 -267531158 + AluSg SINE Alu 11 298 -12 2051 121 0 0 chr1 14663320 14663600 -267530064 + AluSx SINE Alu 1 280 -32 240 35 0 0 chr1 14663600 14663629 -267530035 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 416 316 93 0 chr1 14663737 14663974 -267529690 + MIR SINE MIR 4 262 0 245 276 81 11 chr1 14664374 14664461 -267529203 + L2 LINE L2 3172 3264 -8 1894 131 51 0 chr1 14664508 14664783 -267528881 + AluJb SINE Alu 1 289 -23 317 264 74 40 chr1 14664785 14664933 -267528731 - L1MCa LINE L1 -4372 2054 1902 195 42 0 0 chr1 14665318 14665342 -267528322 + (TG)n Simple_repeat Simple_repeat 2 25 0 2046 114 55 0 chr1 14666397 14666687 -267526977 - AluSg SINE Alu -4 306 1 22 0 0 0 chr1 14666689 14666711 -267526953 + AT_rich Low_complexity Low_complexity 1 22 0 341 273 87 31 chr1 14668362 14668523 -267525141 - L2 LINE L2 -4 3309 3140 44 35 0 0 chr1 14669900 14669958 -267523706 + AT_rich Low_complexity Low_complexity 1 58 0 201 225 14 84 chr1 14670703 14670774 -267522890 + MER5A DNA MER1_type 40 105 -84 822 142 41 41 chr1 14671943 14672112 -267521552 - MER5A DNA MER1_type -15 174 6 1662 179 4 15 chr1 14672517 14672790 -267520874 + AluJo SINE Alu 8 277 -35 23 33 0 0 chr1 14672795 14672825 -267520839 + AT_rich Low_complexity Low_complexity 1 30 0 2071 204 66 0 chr1 14672934 14673376 -267520288 + LTR51 LTR ERV1 201 671 0 256 167 24 119 chr1 14673443 14673527 -267520137 - Charlie2 DNA MER1_type -2503 279 204 2554 69 3 0 chr1 14673589 14673893 -267519771 + AluSp SINE Alu 1 305 -8 928 140 7 0 chr1 14673899 14674035 -267519629 + FLAM_C SINE Alu 1 137 -6 271 341 0 0 chr1 14674046 14674134 -267519530 - Charlie2 DNA MER1_type -2738 124 37 2360 73 0 0 chr1 14674843 14675146 -267518518 - AluSc SINE Alu 0 307 5 365 315 51 35 chr1 14676905 14677102 -267516562 - L2 LINE L2 -1 3312 3113 287 278 10 31 chr1 14677150 14677247 -267516417 + Charlie2 DNA MER1_type 49 143 -2639 264 195 12 24 chr1 14677362 14677444 -267516220 + CT-rich Low_complexity Low_complexity 3 83 0 339 88 0 44 chr1 14677471 14677539 -267516125 + (TCCCC)n Simple_repeat Simple_repeat 1 65 0 2057 123 0 7 chr1 14677549 14677826 -267515838 - AluSx SINE Alu -37 275 1 229 333 56 0 chr1 14678469 14678577 -267515087 + MIR SINE MIR 38 151 -57 2248 74 7 7 chr1 14678697 14679021 -267514643 + AluSx SINE Alu 1 324 0 189 0 0 0 chr1 14679986 14680007 -267513657 + (TTTTA)n Simple_repeat Simple_repeat 4 24 0 2056 116 0 45 chr1 14680025 14680336 -267513328 + AluY SINE Alu 1 297 -14 1611 169 16 53 chr1 14680338 14680474 -267513190 + AluJo SINE Alu 1 141 -171 207 0 0 0 chr1 14680474 14680497 -267513167 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1611 169 16 53 chr1 14680497 14680679 -267512985 + AluJo SINE Alu 141 307 -5 1251 139 0 0 chr1 14680683 14680863 -267512801 + AluSg/x SINE Alu 127 306 -6 542 161 104 17 chr1 14680863 14681026 -267512638 - L1MC2 LINE L1 -8 7777 6191 1120 224 22 44 chr1 14681114 14681431 -267512233 - L1MC2 LINE L1 -121 6223 5914 3297 130 28 28 chr1 14681488 14681969 -267511695 - MER4A LTR ERV1 0 600 117 2314 88 0 49 chr1 14681969 14682297 -267511367 - AluSx SINE Alu 0 312 1 3297 130 28 28 chr1 14682297 14682415 -267511249 - MER4A LTR ERV1 -482 118 1 543 258 65 21 chr1 14682527 14682713 -267510951 + LTR33 LTR ERVL 321 514 -7 2063 187 53 29 chr1 14682763 14682867 -267510797 + MLT1C LTR MaLR 1 101 -366 2346 105 0 7 chr1 14682867 14683171 -267510493 + AluSx SINE Alu 1 302 -10 2063 187 53 29 chr1 14683171 14683515 -267510149 + MLT1C LTR MaLR 101 460 -7 2254 104 0 3 chr1 14683629 14683916 -267509748 - AluSg SINE Alu -24 286 1 228 35 0 0 chr1 14684006 14684035 -267509629 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 735 208 33 47 chr1 14684155 14684278 -267509386 - Charlie5 DNA MER1_type -12 2573 2453 2093 99 54 7 chr1 14684278 14684572 -267509092 - AluSp SINE Alu -5 308 1 735 208 33 47 chr1 14684572 14684660 -267509004 - Charlie5 DNA MER1_type -132 2453 2365 216 244 98 12 chr1 14684687 14684769 -267508895 - MIR SINE MIR -127 135 47 924 330 29 10 chr1 14685046 14685630 -267508034 + L2 LINE L2 2712 3313 0 1785 146 7 28 chr1 14685797 14686085 -267507579 + AluJo SINE Alu 1 282 -30 766 303 88 14 chr1 14686326 14686623 -267507041 + L3 LINE CR1 1202 1520 -57 392 321 36 7 chr1 14687437 14687577 -267506087 - MIR3 SINE MIR -35 173 30 574 330 51 9 chr1 14687624 14687839 -267505825 + MIR SINE MIR 5 228 -34 238 313 0 0 chr1 14688018 14688085 -267505579 + MIR SINE MIR 30 96 -112 1502 193 179 24 chr1 14688088 14688193 -267505471 - MLT1D LTR MaLR 0 505 418 2217 126 0 0 chr1 14688193 14688486 -267505178 - AluSg SINE Alu -17 293 1 1502 193 179 24 chr1 14688486 14688799 -267504865 - MLT1D LTR MaLR -87 418 22 2237 120 0 3 chr1 14689550 14689850 -267503814 - AluSx SINE Alu -13 299 1 1832 175 21 13 chr1 14689908 14690291 -267503373 + L1MB3 LINE L1 5756 6141 -42 2419 100 0 0 chr1 14690293 14690603 -267503061 + AluSx SINE Alu 1 310 -2 288 151 0 82 chr1 14690615 14690688 -267502976 - L1MB3 LINE L1 -33 6150 6084 1338 141 5 18 chr1 14690722 14690942 -267502722 + AluJb SINE Alu 85 301 -11 765 227 45 0 chr1 14691012 14691188 -267502476 - MER20 DNA MER1_type -35 184 1 262 339 9 0 chr1 14691662 14691771 -267501893 + (TGG)n Simple_repeat Simple_repeat 2 111 0 2483 87 0 6 chr1 14691810 14692121 -267501543 + AluSx SINE Alu 1 309 -3 392 182 159 102 chr1 14692715 14692891 -267500773 + MIR3 SINE MIR 20 205 -3 390 305 134 0 chr1 14693182 14693346 -267500318 - L1ME LINE L1 -306 5815 5630 436 317 30 6 chr1 14693460 14693627 -267500037 + L1ME4a LINE L1 5334 5504 -658 550 229 185 15 chr1 14693642 14693699 -267499965 + L1ME4a LINE L1 5621 5667 -454 2278 103 0 10 chr1 14693699 14694000 -267499664 + AluSg SINE Alu 1 298 -12 550 229 185 15 chr1 14694000 14694147 -267499517 + L1ME4a LINE L1 5667 5860 -261 408 20 0 0 chr1 14694203 14694252 -267499412 + (CA)n Simple_repeat Simple_repeat 2 50 0 501 277 0 8 chr1 14695047 14695177 -267498487 - LTR67 LTR ERVL -3 554 426 2173 138 0 0 chr1 14695389 14695687 -267497977 + AluJb SINE Alu 6 303 -9 1438 236 41 51 chr1 14695817 14696109 -267497555 + MLT1C LTR MaLR 6 293 -174 1852 70 0 26 chr1 14696109 14696339 -267497325 + AluSg/x SINE Alu 73 296 -16 1438 236 41 51 chr1 14696339 14696513 -267497151 + MLT1C LTR MaLR 293 467 0 2178 99 37 0 chr1 14696686 14696980 -267496684 - AluY SINE Alu -6 305 1 2413 93 3 0 chr1 14696981 14697283 -267496381 - AluSp SINE Alu -10 303 1 600 317 49 8 chr1 14697304 14697550 -267496114 + MIR SINE MIR 1 256 -6 375 231 320 10 chr1 14697857 14698260 -267495404 - L2 LINE L2 -51 3262 2721 288 137 0 0 chr1 14698310 14698361 -267495303 + (TCCCC)n Simple_repeat Simple_repeat 4 54 0 216 288 27 0 chr1 14698476 14698549 -267495115 - MIR SINE MIR -15 247 173 2290 92 9 28 chr1 14698830 14699147 -267494517 + AluSx SINE Alu 1 311 -1 639 293 27 22 chr1 14699249 14699474 -267494190 + MIR SINE MIR 31 256 -6 1914 166 0 10 chr1 14699677 14699984 -267493680 - AluSx SINE Alu -8 304 1 198 191 0 0 chr1 14700094 14700141 -267493523 + CT-rich Low_complexity Low_complexity 3 49 0 974 200 5 0 chr1 14700266 14700451 -267493213 - MLT1B LTR MaLR 0 390 205 232 264 0 0 chr1 14700426 14700498 -267493166 - MLT1A2 LTR MaLR -131 265 194 * 183 186 0 0 chr1 14700498 14700541 -267493123 + GA-rich Low_complexity Low_complexity 2 44 0 2514 70 0 13 chr1 14700582 14700897 -267492767 + AluY SINE Alu 1 311 0 308 218 0 0 chr1 14700919 14700974 -267492690 + AluJ/monomer SINE Alu 1 55 -246 1086 126 75 13 chr1 14700975 14701134 -267492530 + AluSg/x SINE Alu 113 281 -31 698 213 13 32 chr1 14701154 14701309 -267492355 - MLT1A2 LTR MaLR -222 152 1 693 146 0 46 chr1 14701320 14701413 -267492251 + FLAM_C SINE Alu 2 89 -223 2094 115 58 11 chr1 14701413 14701761 -267491903 - THE1B LTR MaLR 0 364 1 693 146 0 46 chr1 14701761 14701797 -267491867 + FLAM_C SINE Alu 89 125 -187 921 172 21 82 chr1 14701850 14701918 -267491746 + MER20 DNA MER1_type 1 72 -147 2225 123 0 0 chr1 14701918 14702218 -267491446 - AluSq SINE Alu -11 302 3 921 172 21 82 chr1 14702218 14702382 -267491282 + MER20 DNA MER1_type 72 219 0 24 0 0 0 chr1 14703153 14703177 -267490487 + AT_rich Low_complexity Low_complexity 1 24 0 736 273 92 4 chr1 14703817 14704044 -267489620 + MIR SINE MIR 16 262 0 436 307 241 10 chr1 14704358 14704450 -267489214 + L2 LINE L2 2829 2898 -415 1736 173 50 0 chr1 14704450 14704727 -267488937 - AluJo SINE Alu -21 291 1 436 307 241 10 chr1 14704727 14705028 -267488636 + L2 LINE L2 2898 3313 0 193 214 18 36 chr1 14705031 14705087 -267488577 + L2 LINE L2 3180 3234 -79 1763 95 0 26 chr1 14705166 14705398 -267488266 - AluSg/x SINE Alu -18 294 69 2176 112 34 0 chr1 14705654 14705949 -267487715 + AluSx SINE Alu 1 305 -7 1795 194 13 27 chr1 14706977 14707349 -267486315 + MLT1A2 LTR MaLR 1 367 -7 444 328 48 0 chr1 14708029 14708215 -267485449 - L2 LINE L2 -13 3300 3106 1280 178 53 41 chr1 14708268 14708680 -267484984 - MLT2B1 LTR ERVL -7 407 1 2508 68 0 13 chr1 14709355 14709663 -267484001 + AluY SINE Alu 1 304 -7 429 252 39 96 chr1 14710130 14710299 -267483365 + L2 LINE L2 3096 3250 -63 2499 91 0 0 chr1 14710299 14710608 -267483056 + AluSg SINE Alu 1 309 -1 429 252 39 96 chr1 14710608 14710668 -267482996 + L2 LINE L2 3250 3312 -1 270 298 71 0 chr1 14710718 14710802 -267482862 - MIR SINE MIR -78 184 95 278 300 42 110 chr1 14710870 14711133 -267482531 - MIR SINE MIR -4 258 14 692 284 96 22 chr1 14711423 14711902 -267481762 + MER115 DNA AcHobo 2 556 -137 895 65 9 0 chr1 14711903 14712010 -267481654 + AluSp SINE Alu 1 108 -205 1969 222 121 56 chr1 14712131 14712241 -267481423 - MER63D DNA MER1_type -144 917 816 491 15 0 31 chr1 14712241 14712306 -267481358 + (AATAG)n Simple_repeat Simple_repeat 3 65 0 1969 222 121 56 chr1 14712306 14712491 -267481173 - MER63D DNA MER1_type -245 816 644 2346 125 0 0 chr1 14712491 14712803 -267480861 + AluSx SINE Alu 1 312 0 1969 222 121 56 chr1 14712803 14713367 -267480297 - MER63D DNA MER1_type -417 644 1 2305 125 0 3 chr1 14713471 14713782 -267479882 + AluSx SINE Alu 1 310 -2 1913 136 31 7 chr1 14713941 14714227 -267479437 - AluSg SINE Alu -7 303 11 464 183 39 0 chr1 14714416 14714520 -267479144 + L1MB7 LINE L1 5774 5881 -303 778 138 15 0 chr1 14714627 14714757 -267478907 + FLAM_C SINE Alu 1 132 -1 2421 43 0 46 chr1 14715106 14715411 -267478253 - AluY SINE Alu -20 291 1 2626 56 0 3 chr1 14715692 14715997 -267477667 - AluY SINE Alu -7 304 1 2472 78 3 10 chr1 14716556 14716864 -267476800 - AluSp SINE Alu -7 306 1 233 75 25 0 chr1 14717058 14717098 -267476566 + (GA)n Simple_repeat Simple_repeat 2 42 0 2094 106 29 0 chr1 14717294 14717607 -267476057 + AluSx SINE Alu 1 321 0 235 338 76 55 chr1 14717616 14717761 -267475903 - L2 LINE L2 -20 3252 3105 330 296 78 9 chr1 14718442 14718557 -267475107 - L1ME4a LINE L1 -175 5946 5824 2568 37 0 3 chr1 14718562 14718857 -267474807 - AluY SINE Alu -17 294 1 1920 153 0 45 chr1 14718860 14719174 -267474490 - AluJb SINE Alu -12 300 1 1535 235 52 10 chr1 14719181 14719305 -267474359 - L1ME1 LINE L1 -114 6052 5929 504 326 68 28 chr1 14719305 14719630 -267474034 - L1PB1 LINE L1 -232 5919 5582 2375 57 47 3 chr1 14719700 14719998 -267473666 + AluY SINE Alu 1 311 0 183 250 54 18 chr1 14720403 14720459 -267473205 + MIR SINE MIR 18 75 -133 198 314 10 111 chr1 14720500 14720707 -267472957 + L2 LINE L2 2897 3082 -190 2425 94 0 0 chr1 14720879 14721178 -267472486 - AluSg SINE Alu -9 301 3 236 200 20 0 chr1 14721637 14721687 -267471977 + MLT1L LTR MaLR 3 53 -562 2112 154 0 0 chr1 14722032 14722343 -267471321 + AluSx SINE Alu 1 311 -1 412 278 0 35 chr1 14722420 14722535 -267471129 + L2 LINE L2 3202 3312 -1 * 514 226 203 0 chr1 14722531 14722708 -267470956 + MIR SINE MIR 34 246 -16 1977 119 0 38 chr1 14722714 14723037 -267470627 - AluY SINE Alu 0 313 2 253 296 82 31 chr1 14724257 14724355 -267469309 - L2 LINE L2 0 3272 3170 182 282 105 89 chr1 14724788 14724912 -267468752 + L2 LINE L2 3136 3261 -11 563 324 34 10 chr1 14724977 14725181 -267468483 - MIR SINE MIR -37 225 17 1831 161 0 35 chr1 14725882 14726192 -267467472 + AluJb SINE Alu 6 304 -8 347 342 68 47 chr1 14726194 14726621 -267467043 - L2 LINE L2 -74 3239 2804 1125 227 71 32 chr1 14726653 14727161 -267466503 - MLT1E LTR MaLR 0 593 2 440 313 76 20 chr1 14727163 14727361 -267466303 - L2 LINE L2 -556 2758 2550 610 244 44 19 chr1 14727979 14728139 -267465525 - MIR SINE MIR -12 250 87 218 341 0 33 chr1 14729172 14729263 -267464401 + MIR3 SINE MIR 7 94 -114 250 272 65 33 chr1 14729958 14730050 -267463614 - MIR SINE MIR -90 118 24 263 340 71 0 chr1 14731159 14731300 -267462364 - MIR SINE MIR -66 196 46 240 278 29 23 chr1 14731924 14732097 -267461567 + (CCCCG)n Simple_repeat Simple_repeat 1 174 0 30 77 0 0 chr1 14732126 14732191 -267461473 + GC_rich Low_complexity Low_complexity 1 65 0 429 244 72 23 chr1 14734210 14734359 -267459305 + MIR3 SINE MIR 16 171 -37 275 357 62 27 chr1 14734355 14734544 -267459120 + MIR SINE MIR 20 206 -56 * 404 262 70 58 chr1 14734900 14735072 -267458592 + MIR SINE MIR 79 252 -10 725 256 121 0 chr1 14735133 14735340 -267458324 + MIR SINE MIR 21 252 -10 351 269 11 0 chr1 14735373 14735466 -267458198 - MIR SINE MIR -91 117 24 462 229 22 89 chr1 14735698 14735877 -267457787 + MER5A DNA MER1_type 3 169 -20 205 397 32 0 chr1 14735906 14736032 -267457632 + MIR3 SINE MIR 73 202 -6 519 299 153 26 chr1 14737062 14737495 -267456169 - L1ME4a LINE L1 -5 6116 5739 2187 117 0 7 chr1 14737495 14737793 -267455871 - AluSx SINE Alu -14 298 3 519 299 153 26 chr1 14737793 14737891 -267455773 - L1ME4a LINE L1 -382 5739 5655 2400 104 0 0 chr1 14737891 14738198 -267455466 - AluSx SINE Alu -5 307 1 519 299 153 26 chr1 14738198 14738320 -267455344 - L1ME4a LINE L1 -466 5655 5379 2494 87 0 3 chr1 14738989 14739300 -267454364 + AluSx SINE Alu 1 310 -2 427 255 159 36 chr1 14739749 14740178 -267453486 + L2 LINE L2 2737 3216 -97 300 239 60 34 chr1 14740866 14740983 -267452681 - L1M4 LINE L1 -2954 3192 3073 399 41 0 0 chr1 14740996 14741045 -267452619 + (TCCCC)n Simple_repeat Simple_repeat 2 50 0 1110 52 0 29 chr1 14941148 14941284 -267252380 - AluY SINE Alu -179 132 1 225 289 0 12 chr1 14942666 14942749 -267250915 + MIR3 SINE MIR 82 163 -45 1017 152 13 89 chr1 14942813 14943050 -267250614 + MER20 DNA MER1_type 1 219 0 663 282 83 23 chr1 14944436 14944737 -267248927 + L2 LINE L2 2455 2773 -541 326 212 0 35 chr1 14944763 14944848 -267248816 + MER53 DNA DNA 4 85 -104 258 169 0 62 chr1 14944792 14944857 -267248807 - MER53 DNA DNA -22 167 107 * 1914 125 28 7 chr1 14945004 14945291 -267248373 - AluSp SINE Alu -20 293 1 894 292 122 11 chr1 14945336 14945788 -267247876 + L2 LINE L2 2812 3313 0 380 282 118 40 chr1 14945976 14946221 -267247443 + MIR SINE MIR 2 256 -6 277 286 44 11 chr1 14946990 14947081 -267246583 + MLT1G LTR MaLR 497 590 0 40 49 0 0 chr1 14947419 14947480 -267246184 + AT_rich Low_complexity Low_complexity 1 61 0 405 0 0 0 chr1 14947512 14947557 -267246107 + (TA)n Simple_repeat Simple_repeat 1 45 0 260 313 20 60 chr1 14947612 14947762 -267245902 + MIR SINE MIR 35 178 -84 283 250 14 0 chr1 14948184 14948256 -267245408 - MIR SINE MIR -141 121 49 432 189 47 28 chr1 14949143 14949249 -267244415 - MLT1K LTR MaLR -144 444 337 710 247 37 16 chr1 14949281 14949471 -267244193 + MLT1K LTR MaLR 107 300 -288 690 269 25 49 chr1 14949861 14950106 -267243558 + MLT1K LTR MaLR 12 250 -338 2321 92 0 0 chr1 14950365 14950657 -267243007 + AluSq SINE Alu 1 292 -21 2575 109 18 90 chr1 14951764 14952146 -267241518 + MSTB LTR MaLR 2 347 -79 1813 151 44 0 chr1 14952146 14952418 -267241246 + AluJb SINE Alu 1 284 -28 2575 109 18 90 chr1 14952418 14952492 -267241172 + MSTB LTR MaLR 347 425 -1 227 284 84 32 chr1 14952949 14953044 -267240620 + MIR SINE MIR 42 141 -121 279 0 0 0 chr1 14953798 14953829 -267239835 + (TTA)n Simple_repeat Simple_repeat 3 33 0 4841 40 0 3 chr1 14953829 14954402 -267239262 - L1PA4 LINE L1 -18 6137 5567 327 295 58 26 chr1 14955473 14955629 -267238035 - MER117 DNA MER1_type -31 166 6 2297 111 0 0 chr1 14955706 14956013 -267237651 + AluSx SINE Alu 1 307 -5 2280 105 0 3 chr1 14957571 14957866 -267235798 + AluSx SINE Alu 1 294 -18 432 246 51 34 chr1 14957952 14958070 -267235594 + L2 LINE L2 3148 3267 -5 888 187 14 51 chr1 14958241 14958455 -267235209 + MER3 DNA MER1_type 4 209 0 204 314 51 63 chr1 14958504 14958679 -267234985 + MIR SINE MIR 48 220 -42 996 226 122 23 chr1 14959335 14959643 -267234021 - MLT1A1 LTR MaLR -8 356 19 2606 228 57 5 chr1 14959868 14960501 -267233163 - L1MB7 LINE L1 -9 6175 5510 448 193 136 36 chr1 14962537 14962677 -267230987 + MLT1K LTR MaLR 419 572 -16 311 233 35 12 chr1 14963191 14963277 -267230387 + MIR SINE MIR 34 121 -87 2148 121 17 0 chr1 14963351 14963649 -267230015 - AluSx SINE Alu -9 303 1 295 306 184 10 chr1 14963824 14964030 -267229634 + MIR SINE MIR 19 260 -2 32 0 0 0 chr1 14964312 14964344 -267229320 + AT_rich Low_complexity Low_complexity 1 32 0 336 102 0 0 chr1 14965064 14965113 -267228551 + (T)n Simple_repeat Simple_repeat 1 49 0 21 0 0 0 chr1 14965475 14965496 -267228168 + AT_rich Low_complexity Low_complexity 1 21 0 798 145 0 0 chr1 14965496 14965613 -267228051 - FLAM_C SINE Alu -16 117 1 713 321 4 17 chr1 14966109 14966346 -267227318 + MIR SINE MIR 14 247 -15 1242 217 51 65 chr1 14966349 14966763 -267226901 - MLT1I LTR MaLR 0 409 2 2338 26 0 0 chr1 14967316 14967589 -267226075 - L1PA4 LINE L1 -1 6154 5882 259 266 0 0 chr1 14969172 14969236 -267224428 + Charlie8 DNA MER1_type 115 178 -2239 204 260 41 0 chr1 14969884 14969957 -267223707 + CT-rich Low_complexity Low_complexity 4 79 0 296 243 46 25 chr1 14970422 14970533 -267223131 + MIR SINE MIR 70 184 -63 374 308 17 0 chr1 14970734 14970851 -267222813 + MIR3 SINE MIR 36 154 -54 190 263 18 35 chr1 14971252 14971309 -267222355 + MIR SINE MIR 27 82 -180 1941 80 8 0 chr1 14971314 14971551 -267222113 + AluSx SINE Alu 48 286 -26 362 250 10 10 chr1 14971556 14971660 -267222004 + MIR SINE MIR 146 249 -13 204 125 0 0 chr1 14971665 14971697 -267221967 + (ATG)n Simple_repeat Simple_repeat 1 32 0 284 235 25 12 chr1 14971698 14971779 -267221885 + GA-rich Low_complexity Low_complexity 1 82 0 2351 92 3 7 chr1 14972590 14972894 -267220770 + AluSq SINE Alu 2 304 -9 673 213 41 24 chr1 14973950 14974119 -267219545 - HERVL74 LTR ERVL -4115 1570 1399 194 97 0 0 chr1 14974138 14974169 -267219495 + L2 LINE L2 3283 3313 0 267 31 0 0 chr1 14974534 14974566 -267219098 + (TG)n Simple_repeat Simple_repeat 2 33 0 599 304 0 0 chr1 14974760 14974928 -267218736 + MER117 DNA MER1_type 1 168 -29 2218 116 42 33 chr1 14976508 14976869 -267216795 + THE1B LTR MaLR 1 364 0 1862 160 67 81 chr1 14978538 14978763 -267214901 - MER66B LTR ERV1 0 486 259 2288 99 0 0 chr1 14978763 14979056 -267214608 - AluSg SINE Alu -11 299 7 1862 160 67 81 chr1 14979056 14979323 -267214341 - MER66B LTR ERV1 -227 259 1 278 116 0 5 chr1 14979743 14979798 -267213866 - Alu SINE Alu -261 40 1 181 323 16 0 chr1 14979799 14979861 -267213803 - MIR SINE MIR -84 178 116 258 278 214 16 chr1 14980032 14980219 -267213445 + MIR SINE MIR 28 251 -11 264 256 13 26 chr1 14980562 14980640 -267213024 + L2 LINE L2 3150 3226 -46 213 94 0 0 chr1 14980660 14980692 -267212972 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 1847 160 72 19 chr1 14980838 14981213 -267212451 - L1MB7 LINE L1 -5 6179 5785 2181 205 29 86 chr1 14981224 14981853 -267211811 - L1MB7 LINE L1 -1539 4607 4016 459 0 0 0 chr1 14981853 14981904 -267211760 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 2181 205 29 86 chr1 14981904 14981937 -267211727 - L1MB7 LINE L1 -2130 4016 3983 1955 225 38 33 chr1 14981918 14982527 -267211137 - L1MB7 LINE L1 -2537 3609 2998 * 383 281 38 19 chr1 14982638 14982798 -267210866 + MER103 DNA DNA 2 164 -2 666 189 106 76 chr1 14982824 14983088 -267210576 + ORSL DNA AcHobo 1 272 -3 481 128 39 39 chr1 14984434 14984613 -267209051 + (CA)n Simple_repeat Simple_repeat 2 180 0 569 283 139 28 chr1 14984661 14985085 -267208579 + L2 LINE L2 2842 3312 -1 254 366 55 12 chr1 14985869 14986033 -267207631 - L2 LINE L2 0 3272 3102 289 102 34 17 chr1 14988268 14988327 -267205337 + CT-rich Low_complexity Low_complexity 3 62 0 211 114 0 0 chr1 14989332 14989367 -267204297 - MIR SINE MIR -117 145 111 290 165 10 155 chr1 14989372 14989404 -267204260 - Charlie8 DNA MER1_type -176 165 130 1611 153 67 8 chr1 14989404 14989672 -267203992 + AluSx SINE Alu 1 284 -28 290 165 10 155 chr1 14989672 14989736 -267203928 - Charlie8 DNA MER1_type -211 130 83 341 272 98 54 chr1 14991002 14991186 -267202478 - MIR SINE MIR -50 212 21 * 404 280 53 13 chr1 14991177 14991327 -267202337 + MIR SINE MIR 39 194 -68 210 300 0 62 chr1 14992068 14992148 -267201516 - MIR SINE MIR -54 208 134 365 247 99 103 chr1 14992338 14992561 -267201103 + MIR SINE MIR 38 259 -3 2363 84 0 0 chr1 14992579 14992888 -267200776 + AluY SINE Alu 3 311 0 2116 92 3 0 chr1 14993427 14993748 -267199916 + AluSp SINE Alu 1 322 0 234 257 0 105 chr1 14993882 14993987 -267199677 - MIR SINE MIR -7 255 162 * 2689 254 115 33 chr1 14993939 14995344 -267198320 + L2 LINE L2 1789 3301 -12 285 247 65 110 chr1 14995346 14995500 -267198164 - MIR3 SINE MIR -40 168 22 286 302 35 26 chr1 14995584 14995700 -267197964 + MIR3 SINE MIR 92 208 0 342 327 36 0 chr1 14996122 14996232 -267197432 + L2 LINE L2 3127 3240 -32 794 309 8 27 chr1 14996239 14996495 -267197169 - MIR SINE MIR -10 252 2 369 240 163 56 chr1 14996645 14996933 -267196731 - LTR16A LTR ERVL -66 384 73 262 350 28 56 chr1 14996999 14997179 -267196485 - MIR SINE MIR -51 211 37 585 279 166 57 chr1 14997278 14997791 -267195873 + MLT1K LTR MaLR 1 569 -19 2195 165 5 30 chr1 14997791 14997880 -267195784 + MLT1B LTR MaLR 1 91 -299 2063 102 7 3 chr1 14997880 14998173 -267195491 - AluSp SINE Alu -19 294 1 2195 165 5 30 chr1 14998173 14998483 -267195181 + MLT1B LTR MaLR 91 390 0 313 217 91 86 chr1 14998524 14998722 -267194942 - MLT1H LTR MaLR 0 549 344 263 157 23 16 chr1 14998822 14998903 -267194761 - MLT1I LTR MaLR -289 120 73 180 194 0 0 chr1 14999563 14999594 -267194070 - L2 LINE L2 -9 3304 3274 331 227 0 27 chr1 14999668 14999743 -267193921 + MIR3 SINE MIR 93 165 -43 1464 178 0 48 chr1 14999743 15000052 -267193612 - AluJo SINE Alu 0 312 19 2311 146 37 51 chr1 15000325 15000384 -267193280 - MSTB LTR MaLR 0 426 368 2307 97 0 0 chr1 15000384 15000692 -267192972 + AluSx SINE Alu 1 308 -4 2311 146 37 51 chr1 15000692 15001064 -267192600 - MSTB LTR MaLR -58 368 1 589 249 12 29 chr1 15001203 15001376 -267192288 + MIR SINE MIR 5 174 -88 355 226 38 47 chr1 15001769 15001875 -267191789 + MER91A DNA MER1_type 82 186 -10 201 254 51 0 chr1 15003892 15003951 -267189713 + (CACCAT)n Simple_repeat Simple_repeat 3 64 0 670 299 50 14 chr1 15003954 15004175 -267189489 - MIR SINE MIR -10 252 24 288 0 0 0 chr1 15004649 15004681 -267188983 + (CA)n Simple_repeat Simple_repeat 2 33 0 403 228 52 59 chr1 15005639 15005775 -267187889 - MER5A DNA MER1_type 0 189 55 277 304 104 32 chr1 15006284 15006409 -267187255 + MIR SINE MIR 79 212 -50 221 320 21 10 chr1 15006946 15007043 -267186621 - L2 LINE L2 -297 3016 2919 189 309 96 52 chr1 15007170 15007306 -267186358 + MIR3 SINE MIR 40 181 -27 465 259 0 36 chr1 15007334 15007473 -267186191 - MER94 DNA DNA 0 134 1 1845 108 0 0 chr1 15008130 15008388 -267185276 + AluSg1 SINE Alu 36 293 -16 366 146 5 0 chr1 15008491 15008555 -267185109 + L1M4 LINE L1 5543 5608 -566 2159 95 3 13 chr1 15008626 15008941 -267184723 + AluSx SINE Alu 1 312 0 190 328 61 46 chr1 15009349 15009480 -267184184 - L2 LINE L2 -18 3254 3122 261 0 0 0 chr1 15009539 15009568 -267184096 + (CA)n Simple_repeat Simple_repeat 1 29 0 3479 140 45 13 chr1 15009662 15010263 -267183401 - L1MB5 LINE L1 0 6174 5555 292 224 30 0 chr1 15010387 15010454 -267183210 + tRNA-Ile-ATT tRNA tRNA 5 73 -4 369 245 66 38 chr1 15010631 15010781 -267182883 + MIR SINE MIR 17 170 -63 282 143 0 0 chr1 15011966 15012015 -267181649 + (TCC)n Simple_repeat Simple_repeat 1 49 0 25 31 0 0 chr1 15012146 15012178 -267181486 + GC_rich Low_complexity Low_complexity 1 32 0 39 50 0 0 chr1 15012349 15012409 -267181255 + GC_rich Low_complexity Low_complexity 1 60 0 198 0 0 0 chr1 15013897 15013919 -267179745 + (A)n Simple_repeat Simple_repeat 1 22 0 304 271 34 8 chr1 15014368 15014486 -267179178 + L1ME4a LINE L1 6001 6121 0 2126 129 11 107 chr1 15018585 15019026 -267174638 - Tigger2a DNA MER2_type -34 400 2 251 294 110 44 chr1 15019031 15019167 -267174497 - MIR SINE MIR -115 147 3 * 669 253 95 59 chr1 15019167 15019359 -267174305 - MIR SINE MIR -50 212 13 1272 170 5 9 chr1 15019941 15020159 -267173505 - MER20 DNA MER1_type -1 218 2 530 225 42 25 chr1 15020200 15020320 -267173344 + L2 LINE L2 3192 3313 0 1001 249 11 35 chr1 15020401 15020662 -267173002 - MIR SINE MIR 0 262 8 474 286 67 52 chr1 15021108 15021318 -267172346 - MIR SINE MIR -3 259 47 231 257 14 14 chr1 15023026 15023099 -267170565 - MIR SINE MIR -66 142 72 2092 71 0 54 chr1 15023423 15023753 -267169911 - AluY SINE Alu 0 314 1 1489 161 0 8 chr1 15024681 15024936 -267168728 + AluJo SINE Alu 47 299 -13 1046 204 0 0 chr1 15025063 15025244 -267168420 - MER58A DNA MER1_type -2 222 42 237 114 0 0 chr1 15025528 15025563 -267168101 - tRNA-Thr-ACA tRNA tRNA -41 35 1 201 220 60 0 chr1 15025631 15025681 -267167983 + MIR SINE MIR 94 146 -62 199 286 78 7 chr1 15025784 15025860 -267167804 + MIR SINE MIR 113 202 -60 716 190 140 45 chr1 15025860 15026060 -267167604 - MER20 DNA MER1_type 0 219 1 199 286 78 7 chr1 15026060 15026096 -267167568 + MIR SINE MIR 202 234 -28 464 301 71 23 chr1 15028052 15028298 -267165366 + MIR SINE MIR 4 253 -9 198 242 32 48 chr1 15028375 15028437 -267165227 - L2 LINE L2 -10 3262 3202 217 175 32 48 chr1 15028488 15028551 -267165113 + MIR SINE MIR 16 77 -131 1891 144 7 10 chr1 15028573 15028871 -267164793 + AluSx SINE Alu 1 297 -15 200 211 0 99 chr1 15029026 15029097 -267164567 + MIR3 SINE MIR 138 201 -7 352 303 69 35 chr1 15029332 15029477 -267164187 - MIR3 SINE MIR -29 179 30 1400 129 14 0 chr1 15030421 15030630 -267163034 - Tigger1 DNA MER2_type 0 2418 2207 601 175 36 90 chr1 15030624 15030790 -267162874 - Tigger1 DNA MER2_type -2261 157 1 * 299 291 0 36 chr1 15030790 15030900 -267162764 + MIR SINE MIR 153 258 -4 363 387 7 0 chr1 15031469 15031606 -267162058 + MIR3 SINE MIR 22 159 -49 514 319 100 26 chr1 15031738 15031967 -267161697 - MIR SINE MIR -7 255 10 1633 172 7 14 chr1 15032433 15032729 -267160935 - AluJo SINE Alu -17 295 2 2447 169 11 26 chr1 15032748 15033214 -267160450 - L1MB5 LINE L1 -8 6166 5708 377 299 29 15 chr1 15033498 15033635 -267160029 + MIR SINE MIR 124 262 0 585 271 28 39 chr1 15033889 15034070 -267159594 + MIR SINE MIR 6 184 -78 2403 90 64 6 chr1 15034806 15035150 -267158514 + THE1B LTR MaLR 1 364 0 2300 57 3 3 chr1 15035639 15035936 -267157728 + AluY SINE Alu 1 297 -14 298 353 9 17 chr1 15036039 15036155 -267157509 + MIR SINE MIR 17 131 -131 4255 126 13 25 chr1 15036171 15036863 -267156801 + L1PA15 LINE L1 5473 6156 -9 1995 228 42 26 chr1 15036868 15037371 -267156293 - L1M4 LINE L1 -3094 3052 2535 2258 94 0 0 chr1 15037371 15037679 -267155985 + AluY SINE Alu 1 308 -3 1995 228 42 26 chr1 15037679 15037821 -267155843 - L1M4 LINE L1 -3611 2535 2397 256 213 0 0 chr1 15037912 15037959 -267155705 - L2 LINE L2 0 3272 3226 256 260 60 60 chr1 15039644 15039744 -267153920 - MIR SINE MIR -78 184 85 822 252 211 24 chr1 15040224 15040739 -267152925 - L2 LINE L2 0 3313 2689 567 297 27 14 chr1 15040752 15040900 -267152764 + L2 LINE L2 3117 3266 -6 189 0 0 0 chr1 15041209 15041230 -267152434 + (TC)n Simple_repeat Simple_repeat 1 21 0 228 308 39 26 chr1 15041882 15041960 -267151704 - MIR SINE MIR -59 203 125 2166 114 0 0 chr1 15042070 15042377 -267151287 - AluSx SINE Alu -5 307 1 438 252 17 35 chr1 15043193 15043308 -267150356 + MER63A DNA MER1_type 63 175 -35 852 136 0 0 chr1 15043635 15043753 -267149911 + FLAM_C SINE Alu 1 118 -15 31 0 0 0 chr1 15043755 15043786 -267149878 + AT_rich Low_complexity Low_complexity 1 31 0 723 284 16 6 chr1 15043949 15044132 -267149532 + MIR SINE MIR 1 185 -77 21 0 0 0 chr1 15045800 15045821 -267147843 + AT_rich Low_complexity Low_complexity 1 21 0 2247 117 0 0 chr1 15046147 15046447 -267147217 - AluSx SINE Alu -12 300 1 1837 164 115 8 chr1 15046520 15046893 -267146771 + MLT1D LTR MaLR 93 505 0 22 0 0 0 chr1 15047115 15047137 -267146527 + AT_rich Low_complexity Low_complexity 1 22 0 282 324 57 57 chr1 15048162 15048372 -267145292 + MIR SINE MIR 42 251 -11 494 218 32 24 chr1 15048512 15048636 -267145028 - MER20 DNA MER1_type -48 171 47 385 186 168 26 chr1 15049000 15049113 -267144551 + MER20 DNA MER1_type 91 219 0 551 262 39 58 chr1 15049318 15049524 -267144140 + MIR3 SINE MIR 1 202 -6 293 339 40 16 chr1 15049760 15049884 -267143780 - MIR SINE MIR -20 242 116 699 248 36 82 chr1 15050520 15050779 -267142885 - MIR SINE MIR -14 248 12 297 223 15 115 chr1 15050800 15050930 -267142734 - MER5B DNA MER1_type -61 117 1 1930 208 49 22 chr1 15051033 15051485 -267142179 - MLT1C LTR MaLR -2 465 2 2479 91 0 0 chr1 15051521 15051829 -267141835 + AluSx SINE Alu 5 312 0 320 294 137 71 chr1 15051969 15052363 -267141301 + L2 LINE L2 2550 2969 -345 271 249 18 121 chr1 15053917 15054116 -267139548 + L2 LINE L2 2884 3064 -208 485 265 269 12 chr1 15054150 15054407 -267139257 - MLT1K LTR MaLR -162 426 104 422 301 65 54 chr1 15054573 15054959 -267138705 - MLT1J LTR MaLR -5 506 117 2593 228 48 44 chr1 15054996 15055348 -267138316 + L1ME1 LINE L1 5091 5440 -726 2231 88 0 3 chr1 15055348 15055655 -267138009 + AluY SINE Alu 1 306 0 2593 228 48 44 chr1 15055655 15055680 -267137984 + L1ME1 LINE L1 5440 5463 -703 2202 119 58 0 chr1 15055680 15056059 -267137605 + L1MA5A LINE L1 5897 6297 0 2593 228 48 44 chr1 15056059 15056393 -267137271 + L1ME1 LINE L1 5463 5794 -372 7142 166 46 19 chr1 15056393 15057233 -267136431 - L1PA14 LINE L1 -1 6160 5344 2468 85 0 3 chr1 15057233 15057539 -267136125 - AluSq SINE Alu -5 308 4 7142 166 46 19 chr1 15057539 15057582 -267136082 - L1PA14 LINE L1 -817 5344 5304 2525 78 0 0 chr1 15057582 15057891 -267135773 - AluY SINE Alu -2 309 1 7142 166 46 19 chr1 15057891 15059150 -267134514 - L1PA14 LINE L1 -857 5304 3980 2593 228 48 44 chr1 15059150 15059478 -267134186 + L1ME1 LINE L1 5794 6140 -26 927 179 18 12 chr1 15059495 15059663 -267134001 + AluJb SINE Alu 137 305 -7 1047 200 28 9 chr1 15059770 15059985 -267133679 - MER20 DNA MER1_type 0 219 1 290 303 34 0 chr1 15060871 15060990 -267132674 - Charlie8 DNA MER1_type -2211 206 84 386 302 75 42 chr1 15061322 15061534 -267132130 + L1ME4a LINE L1 5846 6064 -57 603 243 21 0 chr1 15062536 15062680 -267130984 - MIR SINE MIR -96 166 20 183 345 36 12 chr1 15063167 15063251 -267130413 - MIR SINE MIR -35 227 142 198 0 0 0 chr1 15063263 15063285 -267130379 + (T)n Simple_repeat Simple_repeat 1 22 0 405 200 0 0 chr1 15063285 15063360 -267130304 - MIR SINE MIR -122 140 66 1671 158 54 24 chr1 15063503 15063800 -267129864 + AluJo SINE Alu 1 306 -6 432 181 0 0 chr1 15065669 15065752 -267127912 + (CCCA)n Simple_repeat Simple_repeat 2 84 0 897 181 0 0 chr1 15065784 15065961 -267127703 + (CCCA)n Simple_repeat Simple_repeat 3 179 0 237 108 0 0 chr1 15065965 15066002 -267127662 + (TCCA)n Simple_repeat Simple_repeat 1 37 0 605 221 32 13 chr1 15066045 15066199 -267127465 + MER20 DNA MER1_type 2 158 -61 180 286 63 0 chr1 15066249 15066312 -267127352 - L2 LINE L2 -82 3231 3165 699 236 50 105 chr1 15066537 15066898 -267126766 - MER102b DNA MER1_type 0 341 1 310 263 38 0 chr1 15066898 15066978 -267126686 + MIR SINE MIR 175 257 -5 856 169 5 82 chr1 15067063 15067234 -267126430 - MER20 DNA MER1_type 0 219 63 2238 121 0 3 chr1 15067234 15067539 -267126125 + AluSq SINE Alu 1 304 -9 856 169 5 82 chr1 15067539 15067562 -267126102 - MER20 DNA MER1_type -156 63 40 638 216 126 6 chr1 15068216 15068383 -267125281 - MER5A DNA MER1_type -1 188 2 2710 149 18 2 chr1 15069024 15069468 -267124196 - LTR32 LTR ERVL -3 468 18 328 294 37 9 chr1 15069495 15069604 -267124060 - MER81 DNA DNA -2 112 1 250 314 121 27 chr1 15069666 15069727 -267123937 - MIR SINE MIR 0 262 208 2294 122 119 10 chr1 15069727 15070112 -267123552 - MSTA LTR MaLR 0 428 2 250 314 121 27 chr1 15070112 15070273 -267123391 - MIR SINE MIR -54 208 19 2518 72 3 3 chr1 15070308 15070613 -267123051 - AluSp SINE Alu -8 305 1 746 193 50 7 chr1 15070614 15070754 -267122910 - MER5A DNA MER1_type -38 151 6 290 252 26 35 chr1 15070930 15071045 -267122619 + L2 LINE L2 3199 3312 -1 195 42 0 0 chr1 15071110 15071134 -267122530 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 263 248 329 13 chr1 15071440 15071589 -267122075 + MIR SINE MIR 67 262 0 331 309 53 7 chr1 15071617 15071762 -267121902 + MIR SINE MIR 105 256 -6 1758 146 39 4 chr1 15072199 15072499 -267121165 + AluSx SINE Alu 13 312 0 236 220 220 0 chr1 15073507 15073598 -267120066 - MIR SINE MIR -3 259 149 379 230 9 9 chr1 15073636 15073749 -267119915 - MER96B DNA MER1_type? -222 195 83 216 0 0 0 chr1 15073772 15073796 -267119868 + (T)n Simple_repeat Simple_repeat 1 24 0 276 242 42 53 chr1 15073798 15073893 -267119771 - MIR SINE MIR -163 99 6 459 309 27 13 chr1 15074266 15074415 -267119249 - MIR SINE MIR -14 248 98 1139 174 5 0 chr1 15074620 15074816 -267118848 - MER58A DNA MER1_type 0 224 28 1853 118 10 80 chr1 15074842 15075156 -267118508 + AluSx SINE Alu 1 292 -20 325 253 22 146 chr1 15075156 15075334 -267118330 + MIR SINE MIR 24 179 -83 384 171 0 0 chr1 15075881 15075963 -267117701 + (TG)n Simple_repeat Simple_repeat 2 83 0 239 300 0 0 chr1 15076033 15076093 -267117571 - MIR SINE MIR -9 253 194 371 266 0 43 chr1 15076107 15076201 -267117463 + L1MC4 LINE L1 6614 6703 -1339 * 373 273 11 0 chr1 15076124 15076212 -267117452 - L1MC4 LINE L1 -1339 6703 6615 1580 178 0 29 chr1 15076212 15076487 -267117177 - AluJo SINE Alu -25 287 21 249 260 77 39 chr1 15076532 15076636 -267117028 - MIR SINE MIR -109 153 46 2464 181 41 39 chr1 15076806 15076852 -267116812 + L1MB2 LINE L1 5422 5466 -705 196 50 0 50 chr1 15076852 15076892 -267116772 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 2464 181 41 39 chr1 15076892 15077381 -267116283 + L1MB2 LINE L1 5466 5961 -210 2152 122 0 0 chr1 15077381 15077667 -267115997 + AluSx SINE Alu 1 286 -26 2464 181 41 39 chr1 15077667 15077694 -267115970 + L1MB2 LINE L1 5961 5986 -185 295 258 37 121 chr1 15077748 15077872 -267115792 + MER5B DNA MER1_type 2 106 -72 2520 83 0 6 chr1 15077872 15078185 -267115479 - AluY SINE Alu 0 311 1 295 258 37 121 chr1 15078185 15078250 -267115414 + MER5B DNA MER1_type 106 175 -3 194 297 0 16 chr1 15078858 15078922 -267114742 + MIR SINE MIR 106 168 -94 189 0 0 0 chr1 15079163 15079184 -267114480 + (A)n Simple_repeat Simple_repeat 1 21 0 932 267 75 34 chr1 15079704 15079970 -267113694 - MLT1C LTR MaLR -2 465 172 1988 98 8 0 chr1 15079970 15080226 -267113438 - AluSc SINE Alu -13 296 39 932 267 75 34 chr1 15080226 15080401 -267113263 - MLT1C LTR MaLR -295 172 6 185 281 53 0 chr1 15081629 15081686 -267111978 - MIR SINE MIR -61 147 88 216 308 15 0 chr1 15081788 15081853 -267111811 + CT-rich Low_complexity Low_complexity 2 67 0 680 181 0 15 chr1 15082518 15082651 -267111013 + MER20 DNA MER1_type 89 219 0 1932 169 0 10 chr1 15082692 15083006 -267110658 + AluJo SINE Alu 1 311 -1 250 121 91 0 chr1 15083318 15083384 -267110280 + CT-rich Low_complexity Low_complexity 3 74 0 872 198 10 52 chr1 15083527 15083719 -267109945 - MER5A DNA MER1_type 0 189 6 510 320 61 17 chr1 15083720 15083901 -267109763 - MER5A DNA MER1_type 0 189 1 505 211 0 10 chr1 15083962 15084066 -267109598 - MER5A DNA MER1_type -77 112 10 905 229 57 14 chr1 15084082 15084292 -267109372 + MER20 DNA MER1_type 1 219 0 198 222 19 0 chr1 15084336 15084390 -267109274 - L2 LINE L2 -209 3063 3009 693 286 37 11 chr1 15084422 15084611 -267109053 + L2 LINE L2 3120 3313 0 1205 258 94 41 chr1 15085842 15086330 -267107334 - LTR67 LTR ERVL -41 516 3 242 284 14 0 chr1 15086744 15086818 -267106846 - MIR3 SINE MIR -15 193 119 288 284 53 21 chr1 15087163 15087258 -267106406 + MER5A DNA MER1_type 88 185 -4 435 335 13 25 chr1 15087263 15087421 -267106243 - MIR3 SINE MIR -48 160 5 1348 175 13 9 chr1 15088008 15088236 -267105428 - AluJo SINE Alu -1 311 83 281 313 47 42 chr1 15089562 15089753 -267103911 + MIR SINE MIR 16 202 -60 2943 132 0 0 chr1 15089755 15090202 -267103462 + L1MB7 LINE L1 5721 6167 -17 185 308 0 0 chr1 15090299 15090351 -267103313 - L2 LINE L2 -19 3294 3243 220 338 19 45 chr1 15091239 15091294 -267102370 + MIR3 SINE MIR 7 62 -146 1883 201 74 83 chr1 15091294 15091851 -267101813 + MLT2B3 LTR ERVL 3 554 0 220 338 19 45 chr1 15091851 15091949 -267101715 + MIR3 SINE MIR 62 156 -52 256 312 0 0 chr1 15091969 15092046 -267101618 - L2 LINE L2 -5 3267 3191 262 308 30 38 chr1 15092096 15092229 -267101435 - L2 LINE L2 -62 3251 3120 2351 211 30 29 chr1 15092306 15092864 -267100800 - MER74B LTR ERVL -5 617 59 720 198 21 64 chr1 15092865 15093052 -267100612 - MIR SINE MIR -50 212 34 314 239 111 39 chr1 15093233 15093357 -267100307 + MER5A DNA MER1_type 19 161 -28 1299 207 3 50 chr1 15093370 15093689 -267099975 - L1ME2 LINE L1 -1 6163 5860 * 2283 186 50 17 chr1 15093684 15094044 -267099620 - L1PA8 LINE L1 -4 6168 5784 2357 172 16 12 chr1 15094044 15094468 -267099196 - MSTB LTR MaLR 0 426 1 2283 186 50 17 chr1 15094468 15094630 -267099034 - L1PA8 LINE L1 -388 5784 5629 2044 142 38 57 chr1 15094774 15094824 -267098840 - L1MB3 LINE L1 0 6183 6134 522 46 0 0 chr1 15094824 15094889 -267098775 + (TA)n Simple_repeat Simple_repeat 1 65 0 2508 37 16 47 chr1 15094895 15095216 -267098448 - AluY SINE Alu 0 311 1 2044 142 38 57 chr1 15095216 15095517 -267098147 - L1MB3 LINE L1 -54 6129 5832 1957 159 7 7 chr1 15095517 15095818 -267097846 - AluJb SINE Alu -11 301 1 2044 142 38 57 chr1 15095818 15095880 -267097784 - L1MB3 LINE L1 -351 5832 5770 248 300 130 10 chr1 15096852 15096952 -267096712 + L2 LINE L2 3145 3256 -16 254 289 22 89 chr1 15097018 15097153 -267096511 + L2 LINE L2 3141 3266 -6 349 250 42 21 chr1 15097540 15097636 -267096028 + MIR SINE MIR 52 149 -113 2431 186 23 45 chr1 15097673 15098189 -267095475 - MLT1D LTR MaLR 0 505 1 1762 254 58 4 chr1 15098282 15098746 -267094918 - LTR16C LTR ERVL -2 489 1 486 245 51 70 chr1 15099110 15099294 -267094370 - MIR SINE MIR -63 145 2 2312 91 14 0 chr1 15099297 15099593 -267094071 - AluSc SINE Alu -9 300 1 211 258 97 0 chr1 15100467 15100529 -267093135 - L2 LINE L2 -5 3308 3241 321 228 228 8 chr1 15101455 15101582 -267092082 + MIR3 SINE MIR 27 181 -27 188 283 0 33 chr1 15101579 15101639 -267092025 + L2 LINE L2 3173 3230 -42 * 2020 124 0 3 chr1 15102142 15102471 -267091193 + AluSx SINE Alu 1 328 0 219 262 0 16 chr1 15104558 15104619 -267089045 + (CATATA)n Simple_repeat Simple_repeat 6 65 0 2124 130 0 16 chr1 15104714 15105022 -267088642 - AluSx SINE Alu -9 303 1 22 0 0 0 chr1 15105277 15105299 -267088365 + AT_rich Low_complexity Low_complexity 1 22 0 842 77 0 8 chr1 15105655 15105772 -267087892 - Tigger2 DNA MER2_type -2019 699 584 2051 140 7 3 chr1 15105880 15106173 -267087491 + AluSx SINE Alu 1 294 -18 222 37 0 0 chr1 15107695 15107722 -267085942 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 795 293 0 15 chr1 15107852 15108057 -267085607 + MIR SINE MIR 15 216 -46 2367 96 7 0 chr1 15108741 15109034 -267084630 - AluSg SINE Alu -15 295 1 270 326 65 69 chr1 15109387 15109632 -267084032 - L2 LINE L2 -1 3271 3028 1147 166 11 0 chr1 15109856 15110043 -267083621 - MER5A DNA MER1_type 0 189 1 1589 147 0 114 chr1 15110239 15110580 -267083084 + AluJo SINE Alu 1 302 0 740 302 65 44 chr1 15112629 15112944 -267080720 - L2 LINE L2 -5 3308 2978 762 244 38 38 chr1 15112944 15113153 -267080511 + MER63A DNA MER1_type 1 209 -1 740 302 65 44 chr1 15113153 15113358 -267080306 - L2 LINE L2 -335 2978 2779 1956 81 4 0 chr1 15113480 15113715 -267079949 + AluSg SINE Alu 59 294 -16 1753 157 3 49 chr1 15114355 15114661 -267079003 - AluJo SINE Alu -20 292 1 1915 146 13 26 chr1 15114741 15115043 -267078621 + AluJb SINE Alu 1 298 -14 360 0 0 0 chr1 15115557 15115597 -267078067 + (TG)n Simple_repeat Simple_repeat 1 40 0 445 275 99 33 chr1 15116171 15116353 -267077311 - MIR SINE MIR -24 238 45 2655 103 11 16 chr1 15116479 15116856 -267076808 + THE1C LTR MaLR 1 375 0 1487 173 11 35 chr1 15116856 15117140 -267076524 + AluJb SINE Alu 31 307 -5 362 272 82 38 chr1 15117986 15118144 -267075520 + LTR33 LTR ERVL 128 292 -229 1321 182 68 46 chr1 15118240 15118533 -267075131 - MLT1B LTR MaLR -19 371 112 5112 107 13 18 chr1 15118533 15119092 -267074572 + L1MA5A LINE L1 5516 6071 -226 3476 122 11 39 chr1 15119092 15119634 -267074030 + MER1A DNA MER1_type 1 527 0 5112 107 13 18 chr1 15119634 15119859 -267073805 + L1MA5A LINE L1 6071 6296 -1 1321 182 68 46 chr1 15119859 15119974 -267073690 - MLT1B LTR MaLR -278 112 1 262 75 100 0 chr1 15120008 15120048 -267073616 + LTR33 LTR ERVL 476 519 -2 326 259 52 52 chr1 15121065 15121181 -267072483 - L2 LINE L2 -1 3312 3197 339 309 170 5 chr1 15122292 15122480 -267071184 - MIR SINE MIR -24 238 20 352 277 15 58 chr1 15123092 15123229 -267070435 - MIR SINE MIR -60 148 18 224 338 84 0 chr1 15123298 15123369 -267070295 - L2 LINE L2 -77 3195 3119 946 257 127 40 chr1 15123438 15124128 -267069536 + L2 LINE L2 2535 3303 -10 1792 141 3 34 chr1 15124132 15124423 -267069241 + AluJo SINE Alu 1 282 -30 893 167 0 0 chr1 15124456 15124588 -267069076 + FLAM_A SINE Alu 1 132 -1 857 234 157 71 chr1 15124693 15125184 -267068480 + MLT1F1 LTR MaLR 10 567 0 512 301 127 34 chr1 15125184 15125569 -267068095 - L2 LINE L2 -341 2973 2553 397 281 69 30 chr1 15126361 15126564 -267067100 - MLT1H LTR MaLR -230 319 109 967 203 56 0 chr1 15126691 15126888 -267066776 + MER20 DNA MER1_type 1 208 -11 1559 199 3 52 chr1 15126888 15127214 -267066450 + AluJo SINE Alu 1 310 -2 2073 153 3 6 chr1 15128013 15128326 -267065338 - AluJb SINE Alu 0 312 1 600 132 0 11 chr1 15128326 15128417 -267065247 - AluJo SINE Alu -177 135 46 225 224 0 0 chr1 15129368 15129426 -267064238 + (TG)n Simple_repeat Simple_repeat 1 58 0 253 411 76 13 chr1 15129562 15129866 -267063798 + L2 LINE L2 2420 2742 -572 362 330 76 0 chr1 15130469 15130587 -267063077 - L2 LINE L2 -5 3267 3141 801 214 140 39 chr1 15130590 15130926 -267062738 - MLT1C LTR MaLR -80 387 18 1043 294 101 29 chr1 15132498 15132787 -267060877 - L2 LINE L2 -10 3303 2968 2285 125 0 0 chr1 15132787 15133090 -267060574 + AluSx SINE Alu 1 303 -9 1043 294 101 29 chr1 15133090 15133256 -267060408 - L2 LINE L2 -345 2968 2815 223 348 85 17 chr1 15133256 15133374 -267060290 - MIR SINE MIR -113 149 24 1032 119 0 0 chr1 15133953 15134096 -267059568 - AluSg/x SINE Alu -18 294 152 2795 104 0 5 chr1 15134354 15134729 -267058935 + THE1C LTR MaLR 1 373 -2 324 293 135 90 chr1 15134831 15135102 -267058562 + L1MC4a LINE L1 5530 5820 -1988 2232 120 13 3 chr1 15135102 15135410 -267058254 + AluSx SINE Alu 1 311 -1 324 293 135 90 chr1 15135410 15135472 -267058192 + L1MC4a LINE L1 5820 5878 -1930 299 295 38 60 chr1 15135875 15136058 -267057606 - L1MC5 LINE L1 -32 7929 7751 1861 171 16 16 chr1 15136074 15136383 -267057281 + AluJb SINE Alu 1 309 -3 517 236 0 9 chr1 15137049 15137155 -267056509 - L2 LINE L2 -9 3304 3200 221 317 121 81 chr1 15138391 15138788 -267054876 + L2 LINE L2 2898 3310 -3 * 365 255 170 21 chr1 15138785 15138926 -267054738 - MIR SINE MIR -73 189 28 478 223 160 6 chr1 15138977 15139128 -267054536 - MER5A DNA MER1_type -8 181 4 950 159 77 0 chr1 15139937 15140107 -267053557 + MER5A DNA MER1_type 3 185 -4 334 314 60 5 chr1 15140143 15140260 -267053404 - MIR SINE MIR -87 121 2 2734 134 11 88 chr1 15140556 15140697 -267052967 - MER1A DNA MER1_type -2173 529 379 2273 72 48 0 chr1 15140697 15140988 -267052676 - AluSp SINE Alu 0 313 9 2734 134 11 88 chr1 15140988 15141234 -267052430 - MER1A DNA MER1_type -2323 379 192 2591 70 0 3 chr1 15141234 15141548 -267052116 + AluSq SINE Alu 1 313 0 2734 134 11 88 chr1 15141548 15141695 -267051969 - MER1A DNA MER1_type -2510 192 35 267 275 44 35 chr1 15141749 15141867 -267051797 - MER5B DNA MER1_type -74 104 2 464 270 34 34 chr1 15141973 15142121 -267051543 + MIR SINE MIR 58 205 -57 1042 179 104 21 chr1 15143066 15143306 -267050358 + MER58B DNA MER1_type 81 340 -1 2357 75 0 10 chr1 15143320 15143612 -267050052 - AluSg SINE Alu -21 289 1 606 315 30 5 chr1 15143679 15143879 -267049785 - MIR SINE MIR -55 207 3 246 266 78 0 chr1 15144035 15144099 -267049565 - MIR3 SINE MIR -126 82 14 331 282 69 52 chr1 15144768 15144942 -267048722 - MIR SINE MIR -39 223 47 291 316 86 38 chr1 15144967 15145176 -267048488 + MIR SINE MIR 21 239 -23 2604 192 20 53 chr1 15145189 15145587 -267048077 + MER119 DNA MER1_type 1 374 -209 1967 177 0 0 chr1 15145587 15145897 -267047767 + AluSx SINE Alu 1 310 -2 2604 192 20 53 chr1 15145897 15146098 -267047566 + MER119 DNA MER1_type 374 580 -3 207 214 24 0 chr1 15147380 15147420 -267046244 + MIR SINE MIR 124 164 -98 471 189 112 97 chr1 15147420 15147527 -267046137 - MER5A DNA MER1_type 0 189 76 2274 92 19 29 chr1 15147527 15147841 -267045823 - AluSp SINE Alu 0 313 3 471 189 112 97 chr1 15147841 15147916 -267045748 - MER5A DNA MER1_type -113 76 4 2502 47 0 3 chr1 15148290 15148590 -267045074 - AluY SINE Alu -12 299 1 404 260 94 83 chr1 15149386 15149485 -267044179 - MER5A DNA MER1_type -6 183 87 414 0 0 0 chr1 15149485 15149531 -267044133 + (TG)n Simple_repeat Simple_repeat 2 47 0 2199 104 0 39 chr1 15149534 15149841 -267043823 - AluSq SINE Alu -18 295 1 404 260 94 83 chr1 15149841 15149918 -267043746 - MER5A DNA MER1_type -103 86 1 216 0 0 0 chr1 15150073 15150097 -267043567 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 770 272 137 40 chr1 15150097 15150527 -267043137 - L2 LINE L2 -13 3300 2829 1335 248 81 13 chr1 15150735 15151292 -267042372 - MLT1E3 LTR MaLR 0 624 5 507 268 49 12 chr1 15151951 15152115 -267041549 - MIR SINE MIR -47 215 46 1769 184 3 20 chr1 15152121 15152426 -267041238 + AluJo SINE Alu 1 300 -12 253 262 117 29 chr1 15154436 15154539 -267039125 + L2 LINE L2 3179 3290 -23 629 187 8 32 chr1 15155380 15155503 -267038161 + L2 LINE L2 3181 3300 -13 289 286 50 76 chr1 15155510 15155629 -267038035 + L2 LINE L2 3188 3303 -10 181 273 23 0 chr1 15155620 15155664 -267038000 - L2 LINE L2 -19 3294 3250 * 195 290 29 14 chr1 15155990 15156059 -267037605 - L2 LINE L2 -9 3263 3194 2382 79 7 0 chr1 15156383 15156674 -267036990 + AluSx SINE Alu 4 296 -16 591 259 37 31 chr1 15157448 15157610 -267036054 - MIR SINE MIR -24 238 76 206 118 0 0 chr1 15157625 15157659 -267036005 + (T)n Simple_repeat Simple_repeat 1 34 0 1816 145 27 27 chr1 15157677 15157973 -267035691 + AluJo SINE Alu 1 296 -16 541 267 40 15 chr1 15157974 15158176 -267035488 - L1ME3A LINE L1 -8 6162 5956 219 139 0 0 chr1 15158479 15158515 -267035149 + (A)n Simple_repeat Simple_repeat 1 36 0 192 231 0 0 chr1 15159768 15159807 -267033857 - L2 LINE L2 -254 3059 3021 3290 164 75 37 chr1 15160071 15160447 -267033217 - L1MB4 LINE L1 -9 6171 5811 219 88 0 0 chr1 15160447 15160481 -267033183 + (TAGA)n Simple_repeat Simple_repeat 1 34 0 1865 176 0 10 chr1 15160486 15160810 -267032854 - AluSq SINE Alu 0 313 1 3290 164 75 37 chr1 15160810 15161130 -267032534 - L1MB4 LINE L1 -372 5808 5442 189 175 200 38 chr1 15161602 15161682 -267031982 + MIR SINE MIR 26 118 -90 591 261 7 7 chr1 15161714 15161852 -267031812 + MIR SINE MIR 107 244 -18 391 336 27 7 chr1 15161888 15162034 -267031630 + MIR SINE MIR 110 258 -4 368 306 37 0 chr1 15162205 15162313 -267031351 + MIR SINE MIR 19 130 -78 537 281 67 11 chr1 15162330 15162508 -267031156 - MER117 DNA MER1_type 0 197 10 341 188 23 148 chr1 15163031 15163159 -267030505 + MIR SINE MIR 87 198 -64 809 215 78 49 chr1 15163159 15163443 -267030221 + L1MD2 LINE L1 6068 6359 0 305 268 18 89 chr1 15164393 15164561 -267029103 - L1ME4a LINE L1 -86 6035 5880 729 266 42 68 chr1 15164638 15164901 -267028763 - MIR SINE MIR -5 257 2 302 318 20 27 chr1 15164945 15165093 -267028571 - MER117 DNA MER1_type -2 195 49 2583 140 80 2 chr1 15165109 15165510 -267028154 - MSTB1 LTR MaLR 0 432 1 273 265 44 0 chr1 15165550 15165618 -267028046 - MIR3 SINE MIR -47 161 91 1772 183 27 43 chr1 15165631 15166002 -267027662 - MLT1A1 LTR MaLR 0 365 1 28 29 0 0 chr1 15166429 15166464 -267027200 + AT_rich Low_complexity Low_complexity 1 35 0 404 125 0 0 chr1 15166464 15166528 -267027136 - L1PB1 LINE L1 -2 6149 6086 764 160 0 8 chr1 15166675 15166794 -267026870 + FLAM_C SINE Alu 2 119 -24 197 32 0 32 chr1 15166808 15166839 -267026825 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 554 188 27 0 chr1 15167049 15167161 -267026503 - MLT1A1 LTR MaLR -66 299 185 2101 129 0 10 chr1 15167581 15167876 -267025788 + AluSx SINE Alu 1 292 -20 453 267 34 75 chr1 15167990 15168141 -267025523 + MIR SINE MIR 6 149 -63 1825 166 0 35 chr1 15168190 15168503 -267025161 + AluJb SINE Alu 1 302 -10 688 272 25 0 chr1 15170622 15170822 -267022842 + MIR SINE MIR 15 222 -40 282 29 0 0 chr1 15171308 15171343 -267022321 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 336 161 0 0 chr1 15171354 15171416 -267022248 + CT-rich Low_complexity Low_complexity 3 64 0 1400 199 52 4 chr1 15171416 15171563 -267022101 - AluJo SINE Alu -32 280 142 189 0 0 0 chr1 15171563 15171584 -267022080 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1400 199 52 4 chr1 15171584 15171703 -267021961 - AluJo SINE Alu -170 142 1 884 138 0 8 chr1 15171705 15171835 -267021829 - FLAM_C SINE Alu -6 137 9 266 266 13 13 chr1 15172137 15172216 -267021448 + GA-rich Low_complexity Low_complexity 2 80 0 219 264 181 77 chr1 15172923 15173078 -267020586 + MIR3 SINE MIR 15 185 -23 393 231 68 105 chr1 15173189 15173513 -267020151 + LTR16A1 LTR ERVL 146 457 0 205 310 14 0 chr1 15173554 15173625 -267020039 - MIR SINE MIR -7 255 184 369 265 109 14 chr1 15173755 15173902 -267019762 + L2 LINE L2 2618 2778 -536 955 152 0 0 chr1 15173902 15174034 -267019630 + FLAM_C SINE Alu 1 132 -11 566 275 94 79 chr1 15174035 15174053 -267019611 + L2 LINE L2 2776 2792 -480 1161 215 0 5 chr1 15174053 15174276 -267019388 - MER58A DNA MER1_type -2 222 1 566 275 94 79 chr1 15174276 15174757 -267018907 + L2 LINE L2 2792 3269 -3 2560 71 0 0 chr1 15175674 15175983 -267017681 + AluY SINE Alu 1 309 -2 2218 126 3 0 chr1 15176970 15177279 -267016385 - AluSx SINE Alu -2 310 1 619 239 52 143 chr1 15177439 15177866 -267015798 + L2 LINE L2 2926 3313 0 431 335 85 16 chr1 15178034 15178222 -267015442 - MIR SINE MIR -14 248 48 1235 192 14 0 chr1 15178310 15178524 -267015140 - MER20 DNA MER1_type -2 217 1 878 267 157 5 chr1 15178728 15179110 -267014554 - LTR16B LTR ERVL 0 464 25 690 288 43 23 chr1 15179210 15179509 -267014155 - LTR16C LTR ERVL 0 491 187 269 302 135 0 chr1 15179829 15179925 -267013739 - L2 LINE L2 -17 3255 3147 280 362 46 7 chr1 15179984 15180136 -267013528 + MIR SINE MIR 105 262 0 252 286 104 52 chr1 15181516 15181670 -267011994 - MIR SINE MIR 0 262 101 434 289 142 26 chr1 15181936 15182168 -267011496 - MER102a DNA MER1_type -11 319 61 2273 101 3 0 chr1 15182588 15182884 -267010780 - AluSq SINE Alu -16 297 1 847 304 140 29 chr1 15182965 15183748 -267009916 - L2 LINE L2 -1 3271 2394 2298 98 7 3 chr1 15184773 15185080 -267008584 + AluSx SINE Alu 1 308 -4 1996 129 0 7 chr1 15185430 15185710 -267007954 + AluJo SINE Alu 1 278 -34 293 311 92 0 chr1 15187444 15187563 -267006101 + MIR SINE MIR 56 185 -77 1971 142 0 44 chr1 15187699 15188015 -267005649 - AluJo SINE Alu -10 302 1 254 266 43 21 chr1 15188190 15188284 -267005380 - L2 LINE L2 -76 3196 3101 250 257 48 38 chr1 15188332 15188437 -267005227 - MIR SINE MIR -51 211 106 308 292 86 57 chr1 15188525 15188734 -267004930 - MIR SINE MIR -14 248 34 2411 89 20 0 chr1 15189230 15189532 -267004132 - AluSx SINE Alu -2 310 3 288 301 36 0 chr1 15189794 15189877 -267003787 - MIR SINE MIR -12 250 165 1583 181 26 42 chr1 15189877 15190186 -267003478 + AluJo SINE Alu 1 304 -8 2103 65 47 33 chr1 15190214 15190526 -267003138 - AluY SINE Alu 0 316 1 200 296 185 22 chr1 15190527 15190662 -267003002 - MIR SINE MIR -96 166 10 340 296 126 13 chr1 15190675 15190932 -267002732 + L2 LINE L2 2740 3016 -297 3043 108 7 0 chr1 15190967 15191401 -267002263 - MER41B LTR ERV1 -180 455 19 1434 187 86 52 chr1 15191400 15191807 -267001857 - MER72 LTR ERV1 -269 402 1 * 620 251 146 55 chr1 15191966 15192481 -267001183 - MLT1H1 LTR MaLR -16 539 3 318 239 119 18 chr1 15193190 15193299 -267000365 - MIR SINE MIR 0 262 143 305 297 210 31 chr1 15193370 15193660 -267000004 + L2 LINE L2 2910 3251 -62 581 271 7 7 chr1 15193692 15193843 -266999821 + MIR SINE MIR 64 214 -48 2575 62 0 0 chr1 15194271 15194577 -266999087 + AluY SINE Alu 1 306 -5 478 79 124 56 chr1 15194921 15195010 -266998654 + AluJ/FLAM SINE Alu 2 96 -216 496 265 146 11 chr1 15195165 15195350 -266998314 + MIR SINE MIR 53 262 0 2325 118 0 3 chr1 15195495 15195808 -266997856 + AluSx SINE Alu 1 312 0 363 310 127 26 chr1 15196723 15197139 -266996525 - L2 LINE L2 -3 3269 2812 1403 245 15 18 chr1 15197213 15197609 -266996055 - MLT2C1 LTR ERVL 0 397 3 2116 134 0 0 chr1 15197707 15197997 -266995667 + AluJb SINE Alu 1 290 -22 267 246 14 0 chr1 15198329 15198398 -266995266 - MLT1K LTR MaLR -10 578 509 519 250 0 0 chr1 15198862 15198970 -266994694 + MIR SINE MIR 84 191 -71 598 304 68 30 chr1 15199101 15199338 -266994326 + MIR SINE MIR 16 261 -1 206 263 137 21 chr1 15200317 15200412 -266993252 + MIR SINE MIR 1 106 -156 650 275 24 34 chr1 15200466 15200673 -266992991 - MIR SINE MIR -50 212 8 466 272 105 31 chr1 15200647 15200838 -266992826 + MIR SINE MIR 56 260 -2 * 860 191 35 6 chr1 15201241 15201414 -266992250 - MER45A DNA AcHobo 0 178 1 324 0 0 0 chr1 15202991 15203027 -266990637 + (A)n Simple_repeat Simple_repeat 1 36 0 217 167 185 0 chr1 15203027 15203081 -266990583 + L2 LINE L2 3204 3267 -5 2326 106 3 31 chr1 15203220 15203541 -266990123 - AluSp SINE Alu 0 313 2 777 103 8 0 chr1 15203670 15203796 -266989868 - L1MB7 LINE L1 -27 6157 6031 1702 170 11 0 chr1 15203951 15204221 -266989443 - AluSx SINE Alu -39 273 1 360 297 50 0 chr1 15205393 15205494 -266988170 - L2 LINE L2 0 3313 3208 543 174 18 0 chr1 15205536 15205645 -266988019 + L1MB5 LINE L1 5721 5831 -343 226 282 106 85 chr1 15205728 15205916 -266987748 - L2 LINE L2 -182 3090 2899 2422 98 0 0 chr1 15205926 15206222 -266987442 + AluSc SINE Alu 1 296 -13 281 245 21 53 chr1 15206377 15206471 -266987193 - L2 LINE L2 -654 2660 2570 845 271 31 31 chr1 15206632 15206887 -266986777 + MIR SINE MIR 8 262 0 189 292 0 56 chr1 15207663 15207711 -266985953 + MIR SINE MIR 103 147 -115 454 200 159 82 chr1 15207711 15207906 -266985758 + MER63A DNA MER1_type 1 210 0 189 292 0 56 chr1 15207906 15207929 -266985735 + MIR SINE MIR 147 170 -92 2315 145 30 29 chr1 15207938 15208492 -266985172 + MLT2A2 LTR ERVL 1 554 0 460 246 190 33 chr1 15208936 15209241 -266984423 + L2 LINE L2 2837 3189 -124 259 298 60 0 chr1 15209654 15209738 -266983926 + L2 LINE L2 3196 3284 -29 2432 93 0 0 chr1 15210281 15210591 -266983073 - AluSq SINE Alu -3 310 1 630 351 52 4 chr1 15210902 15211133 -266982531 + MIR SINE MIR 21 262 0 692 270 51 6 chr1 15211152 15211373 -266982291 - MIR SINE MIR -24 238 8 2488 76 0 22 chr1 15211647 15211964 -266981700 - AluY SINE Alu -1 310 1 2029 132 30 10 chr1 15211979 15212158 -266981506 - AluJb SINE Alu 0 312 123 213 39 0 0 chr1 15212158 15212184 -266981480 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2029 132 30 10 chr1 15212184 15212308 -266981356 - AluJb SINE Alu -189 123 3 335 179 0 15 chr1 15212358 15212425 -266981239 + MLT1I LTR MaLR 335 400 -9 2695 171 20 22 chr1 15213436 15213650 -266980014 + L1MB7 LINE L1 5615 5828 -356 1974 156 0 10 chr1 15213650 15213945 -266979719 + AluJb SINE Alu 2 293 -19 2695 171 20 22 chr1 15213945 15214285 -266979379 + L1MB7 LINE L1 5828 6168 -16 2322 93 3 3 chr1 15214903 15215214 -266978450 - AluY SINE Alu 0 311 1 2153 130 7 3 chr1 15215354 15215654 -266978010 + AluSx SINE Alu 1 301 -11 757 243 10 20 chr1 15215656 15215858 -266977806 + MER20 DNA MER1_type 17 216 -3 416 314 108 5 chr1 15216337 15216531 -266977133 - MIR SINE MIR -1 261 48 228 300 8 46 chr1 15217421 15217551 -266976113 - LTR67 LTR ERVL -9 548 424 21 0 0 0 chr1 15218190 15218211 -266975453 + AT_rich Low_complexity Low_complexity 1 21 0 311 309 9 36 chr1 15218219 15218329 -266975335 + MIR SINE MIR 82 188 -74 628 291 133 65 chr1 15218333 15218687 -266974977 - MLT1J LTR MaLR -1 452 72 2122 98 3 11 chr1 15218707 15219037 -266974627 + AluSx SINE Alu 1 328 0 190 176 29 0 chr1 15220034 15220068 -266973596 - MIR SINE MIR -189 73 39 359 268 50 42 chr1 15220513 15220663 -266973001 + LTR67 LTR ERVL 380 514 -9 1834 166 10 10 chr1 15220723 15221013 -266972651 + AluJb SINE Alu 7 296 -16 2256 119 0 6 chr1 15221517 15221828 -266971836 - AluSx SINE Alu -3 309 1 929 272 79 63 chr1 15221938 15222379 -266971285 - MLT1L LTR MaLR 0 615 168 688 164 45 79 chr1 15223166 15223343 -266970321 - MER20 DNA MER1_type 0 219 49 520 278 73 48 chr1 15223451 15223724 -266969940 + L2 LINE L2 3034 3313 0 306 270 120 10 chr1 15223833 15223933 -266969731 - MIR SINE MIR -122 140 30 575 218 55 12 chr1 15224874 15225039 -266968625 + MER104 DNA MER2_type 5 176 -4 270 321 36 18 chr1 15225042 15225154 -266968510 - MIR SINE MIR -105 157 44 454 315 45 6 chr1 15225421 15225599 -266968065 - MER91A DNA MER1_type -10 186 2 1841 189 3 3 chr1 15225746 15226042 -266967622 - AluJo SINE Alu -14 298 3 196 298 53 53 chr1 15226269 15226383 -266967281 + MIR SINE MIR 20 133 -129 1519 253 102 16 chr1 15226428 15226871 -266966793 + MLT1G1 LTR MaLR 73 553 -42 251 396 9 0 chr1 15227033 15227139 -266966525 + MIR SINE MIR 141 247 -15 2020 122 37 0 chr1 15227449 15227744 -266965920 - AluSg SINE Alu -4 306 1 252 356 19 10 chr1 15228127 15228231 -266965433 + MIR SINE MIR 141 245 -17 1403 255 40 24 chr1 15229409 15229829 -266963835 - MLT1E LTR MaLR -2 591 165 302 294 0 0 chr1 15229836 15229904 -266963760 + L1MC4 LINE L1 6621 6688 -1354 327 168 39 39 chr1 15229905 15230084 -266963580 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 279 217 56 0 chr1 15230085 15230162 -266963502 - MLT1E LTR MaLR -499 94 6 314 303 89 0 chr1 15230166 15230329 -266963335 - MIR SINE MIR -66 142 2 332 293 19 9 chr1 15230473 15230579 -266963085 + L2 LINE L2 3195 3301 -12 181 167 0 0 chr1 15230576 15230606 -266963058 - L2 LINE L2 0 3313 3284 * 355 250 12 0 chr1 15230738 15230818 -266962846 + L2 LINE L2 3219 3299 -14 666 292 83 52 chr1 15231517 15232003 -266961661 - LTR33 LTR ERVL 0 521 17 2210 120 0 0 chr1 15232003 15232295 -266961369 + AluSq SINE Alu 1 292 -21 666 292 83 52 chr1 15232295 15232312 -266961352 - LTR33 LTR ERVL -504 17 2 1845 219 25 8 chr1 15232535 15232937 -266960727 + MLT2C2 LTR ERVL 1 409 -55 2243 116 3 7 chr1 15232937 15233239 -266960425 - AluSx SINE Alu -11 301 1 495 253 37 47 chr1 15233292 15233482 -266960182 - MER5A DNA MER1_type -1 188 1 2064 137 3 39 chr1 15234371 15234481 -266959183 + MLT1B LTR MaLR 1 113 -277 2034 108 14 11 chr1 15234481 15234759 -266958905 + AluSx SINE Alu 20 298 -14 2064 137 3 39 chr1 15234759 15235012 -266958652 + MLT1B LTR MaLR 113 351 -39 194 260 10 125 chr1 15235012 15235108 -266958556 - MIR SINE MIR -57 151 89 583 231 46 1 chr1 15236706 15236865 -266956799 + MER20B DNA MER1_type 33 202 -17 2463 87 0 0 chr1 15237062 15237362 -266956302 + AluSx SINE Alu 1 300 -12 234 62 0 0 chr1 15237917 15237949 -266955715 + (CAT)n Simple_repeat Simple_repeat 2 33 0 842 246 32 14 chr1 15238728 15238948 -266954716 - MIR SINE MIR -36 226 3 218 314 194 16 chr1 15239080 15239204 -266954460 + L2 LINE L2 3160 3305 -8 185 292 42 14 chr1 15239231 15239303 -266954361 - MIR SINE MIR -142 120 47 253 354 112 6 chr1 15240106 15240267 -266953397 + MIR SINE MIR 20 197 -65 1706 110 0 11 chr1 15240489 15240752 -266952912 - L1PB1 LINE L1 -1 6150 5891 265 256 23 12 chr1 15241250 15241336 -266952328 - MER117 DNA MER1_type 0 197 111 897 271 180 42 chr1 15241869 15242392 -266951272 - MLT1J LTR MaLR -13 602 8 1176 143 0 0 chr1 15242653 15242814 -266950850 + FRAM SINE Alu 1 160 -16 216 340 69 25 chr1 15242902 15243061 -266950603 - L2 LINE L2 -337 2976 2811 1395 237 65 16 chr1 15243306 15243673 -266949991 - MLT1K LTR MaLR -67 521 137 2152 115 99 10 chr1 15243701 15244093 -266949571 - MSTA LTR MaLR -1 427 1 1067 65 0 0 chr1 15244266 15244390 -266949274 - AluSq/x SINE Alu -188 124 1 255 31 0 0 chr1 15244570 15244602 -266949062 + (CTG)n Simple_repeat Simple_repeat 2 33 0 621 286 96 32 chr1 15245069 15245143 -266948521 - MLT1K LTR MaLR 0 588 520 2292 97 3 7 chr1 15245143 15245442 -266948222 + AluSq SINE Alu 1 298 -15 621 286 96 32 chr1 15245442 15245710 -266947954 - MLT1K LTR MaLR -68 520 224 1306 125 60 19 chr1 15245739 15245955 -266947709 + MER30 DNA MER1_type 2 226 -4 1132 218 30 11 chr1 15245971 15246237 -266947427 + MER58B DNA MER1_type 39 309 -32 33 73 0 0 chr1 15246237 15246305 -266947359 + AT_rich Low_complexity Low_complexity 1 68 0 475 251 64 75 chr1 15246525 15246792 -266946872 - LTR16C LTR ERVL 0 491 228 459 52 0 0 chr1 15247200 15247258 -266946406 + (CA)n Simple_repeat Simple_repeat 1 58 0 2227 129 0 0 chr1 15247264 15247566 -266946098 - AluSx SINE Alu -10 302 1 2594 69 0 0 chr1 15247587 15247891 -266945773 - AluY SINE Alu -7 304 1 242 259 80 36 chr1 15247925 15248037 -266945627 - L2 LINE L2 -10 3303 3187 477 257 74 27 chr1 15248728 15248876 -266944788 - MIR SINE MIR -62 200 46 26 50 0 0 chr1 15250001 15250041 -266943623 + AT_rich Low_complexity Low_complexity 1 40 0 30 0 0 0 chr1 15250321 15250351 -266943313 + AT_rich Low_complexity Low_complexity 1 30 0 403 214 6 187 chr1 15250362 15250441 -266943223 - L1ME3A LINE L1 -263 5903 5811 2256 83 3 3 chr1 15250441 15250729 -266942935 - AluSp SINE Alu -25 288 1 403 214 6 187 chr1 15250729 15250781 -266942883 - L1ME3A LINE L1 -355 5811 5810 1695 148 94 4 chr1 15250781 15250948 -266942716 - AluJo SINE Alu -10 302 99 219 36 0 0 chr1 15250948 15250976 -266942688 + (TTA)n Simple_repeat Simple_repeat 1 28 0 1695 148 94 4 chr1 15250976 15251085 -266942579 - AluJo SINE Alu -213 99 1 403 214 6 187 chr1 15251085 15251142 -266942522 - L1ME3A LINE L1 -356 5810 5744 1155 182 35 117 chr1 15251190 15251559 -266942105 - MLT1A1 LTR MaLR 0 365 27 1935 152 0 3 chr1 15251869 15252152 -266941512 - AluSx SINE Alu -30 282 1 618 291 87 12 chr1 15252426 15252667 -266940997 + MIR SINE MIR 4 262 0 212 173 93 107 chr1 15254033 15254108 -266939556 - L2 LINE L2 -4 3309 3236 235 345 69 0 chr1 15254233 15254320 -266939344 - L2 LINE L2 -324 2989 2897 2465 57 40 3 chr1 15254366 15254666 -266938998 + AluY SINE Alu 1 311 0 456 250 36 0 chr1 15254844 15254956 -266938708 - MER63 DNA MER1_type -279 783 42 930 304 106 17 chr1 15255043 15255506 -266938158 + L2 LINE L2 2810 3313 0 711 265 96 61 chr1 15255987 15256394 -266937270 - HAL1 LINE L1 0 2507 2087 330 246 82 93 chr1 15256496 15256679 -266936985 - L2 LINE L2 -189 3124 2944 320 276 52 99 chr1 15256677 15256869 -266936795 - L2 LINE L2 -188 3084 2902 * 460 221 14 62 chr1 15257489 15257634 -266936030 + MIR SINE MIR 91 228 -34 462 228 9 9 chr1 15258039 15258153 -266935511 + (TGGG)n Simple_repeat Simple_repeat 1 114 0 931 180 8 0 chr1 15258155 15258830 -266934834 + (TGGA)n Simple_repeat Simple_repeat 1 680 0 923 308 89 5 chr1 15258948 15259341 -266934323 - LTR16B LTR ERVL 0 464 39 442 234 93 0 chr1 15259424 15259531 -266934133 - MER103 DNA DNA -49 117 1 207 0 0 0 chr1 15259730 15259753 -266933911 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 207 286 0 76 chr1 15259833 15259952 -266933712 - MIR SINE MIR -24 238 129 354 294 234 11 chr1 15259986 15260170 -266933494 - MIR SINE MIR -13 249 25 583 234 12 70 chr1 15260810 15260933 -266932731 + L2 LINE L2 3153 3265 -48 1974 143 10 7 chr1 15260933 15261233 -266932431 + AluJo SINE Alu 5 305 -7 583 234 12 70 chr1 15261233 15261280 -266932384 + L2 LINE L2 3265 3313 0 204 247 26 13 chr1 15261400 15261477 -266932187 + CT-rich Low_complexity Low_complexity 1 78 0 344 212 143 28 chr1 15261535 15261675 -266931989 + MIR SINE MIR 37 184 -63 217 200 33 11 chr1 15262254 15262315 -266931349 - MIR3 SINE MIR -42 166 103 241 185 15 92 chr1 15262599 15262664 -266931000 - MIR SINE MIR 0 262 203 2383 88 0 7 chr1 15263169 15263464 -266930200 - AluSc SINE Alu -16 293 1 645 231 39 19 chr1 15263639 15263795 -266929869 - MIR SINE MIR -62 200 42 225 303 168 17 chr1 15263832 15263951 -266929713 + L2 LINE L2 3133 3269 -3 251 323 219 10 chr1 15264828 15265029 -266928635 + MIR SINE MIR 17 259 -3 285 357 9 9 chr1 15265208 15265320 -266928344 + MIR SINE MIR 24 135 -127 706 169 137 0 chr1 15266044 15266203 -266927461 + MER5A DNA MER1_type 5 188 -1 260 385 8 8 chr1 15266205 15266322 -266927342 - MIR SINE MIR -122 140 24 205 281 167 10 chr1 15266329 15266425 -266927239 - L2 LINE L2 -2 3311 3201 472 290 103 50 chr1 15266605 15266813 -266926851 - MIR SINE MIR -11 197 19 194 211 0 127 chr1 15266816 15266887 -266926777 - L2 LINE L2 -336 2977 2916 300 185 0 0 chr1 15267390 15267444 -266926220 - MIR SINE MIR -63 145 92 2689 158 31 11 chr1 15267582 15268030 -266925634 - MSTB2 LTR MaLR 0 457 1 259 292 139 0 chr1 15268930 15269046 -266924618 - MIR SINE MIR -33 175 45 246 350 153 6 chr1 15270109 15270266 -266923398 + L3b LINE CR1 1194 1373 -210 480 240 87 47 chr1 15270332 15270473 -266923191 + MIR SINE MIR 74 223 -39 1828 138 29 55 chr1 15270473 15270785 -266922879 + AluJb SINE Alu 1 304 -8 2073 153 74 72 chr1 15271041 15271431 -266922233 - L1MB8 LINE L1 0 6178 5783 2514 90 0 0 chr1 15271431 15271743 -266921921 - AluSx SINE Alu 0 312 1 2073 153 74 72 chr1 15271743 15271884 -266921780 - L1MB8 LINE L1 -395 5783 5644 2449 45 0 17 chr1 15272170 15272459 -266921205 + AluY SINE Alu 16 299 -12 594 278 68 19 chr1 15272491 15272696 -266920968 - MIR SINE MIR -43 219 5 395 83 17 0 chr1 15273339 15273399 -266920265 + (TTCC)n Simple_repeat Simple_repeat 4 64 0 2070 132 3 10 chr1 15273428 15273723 -266919941 - AluSx SINE Alu -17 295 3 293 293 54 20 chr1 15273763 15273910 -266919754 - L1M4 LINE L1 -3343 2803 2652 453 79 22 124 chr1 15274277 15274326 -266919338 - MADE1 DNA Mariner 0 80 42 2117 139 0 3 chr1 15274326 15274621 -266919043 + AluSx SINE Alu 1 294 -18 453 79 22 124 chr1 15274621 15274660 -266919004 - MADE1 DNA Mariner -38 42 1 1129 273 94 31 chr1 15274815 15275303 -266918361 + MLT1K LTR MaLR 64 582 -6 314 274 192 27 chr1 15276110 15276256 -266917408 - MIR SINE MIR -58 204 35 2305 90 3 0 chr1 15277513 15277812 -266915852 + AluSg SINE Alu 1 300 -10 491 256 110 52 chr1 15277976 15278167 -266915497 + MIR SINE MIR 18 219 -43 198 275 25 50 chr1 15278287 15278367 -266915297 + L3 LINE CR1 1396 1473 -104 1491 223 95 19 chr1 15278893 15279315 -266914349 + MLT1C LTR MaLR 6 459 -8 294 301 91 67 chr1 15279317 15279646 -266914018 + L2 LINE L2 2888 3224 -48 1863 167 7 0 chr1 15279669 15279963 -266913701 + AluJo SINE Alu 1 296 -16 320 323 21 0 chr1 15280715 15280811 -266912853 + MIR SINE MIR 94 191 -71 182 152 0 22 chr1 15281248 15281294 -266912370 + (CATAG)n Simple_repeat Simple_repeat 5 49 0 263 223 34 40 chr1 15281299 15281474 -266912190 + (CATCG)n Simple_repeat Simple_repeat 5 178 0 450 207 107 25 chr1 15281621 15281742 -266911922 - MIR SINE MIR -119 143 13 1056 150 0 0 chr1 15281921 15282074 -266911590 + FRAM SINE Alu 1 153 -13 610 259 25 68 chr1 15283442 15283558 -266910106 + MIR SINE MIR 20 122 -140 2108 138 7 0 chr1 15283558 15283862 -266909802 - AluSx SINE Alu -4 308 3 610 259 25 68 chr1 15283862 15283981 -266909683 + MIR SINE MIR 122 245 -17 387 0 0 0 chr1 15284873 15284916 -266908748 + (TG)n Simple_repeat Simple_repeat 1 43 0 303 253 25 99 chr1 15284969 15285131 -266908533 - MLT1K LTR MaLR -382 206 57 265 287 59 37 chr1 15285146 15285282 -266908382 - L2 LINE L2 -940 2374 2236 284 275 174 20 chr1 15285370 15285502 -266908162 + MIR SINE MIR 26 185 -77 970 169 106 0 chr1 15285502 15285691 -266907973 + MER3 DNA MER1_type 1 209 0 284 275 174 20 chr1 15285691 15285707 -266907957 + MIR SINE MIR 185 197 -65 960 161 0 0 chr1 15285969 15286202 -266907462 + (TGGA)n Simple_repeat Simple_repeat 1 233 0 1134 117 0 0 chr1 15286238 15286417 -266907247 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 2940 246 166 25 chr1 15286425 15287682 -266905982 - L2 LINE L2 0 3313 1862 534 31 0 0 chr1 15287708 15287772 -266905892 + (TGGA)n Simple_repeat Simple_repeat 1 64 0 208 158 26 0 chr1 15288060 15288098 -266905566 + GA-rich Low_complexity Low_complexity 2 40 0 2467 89 3 0 chr1 15288287 15288590 -266905074 + AluSp SINE Alu 1 304 -9 255 61 0 0 chr1 15288718 15288751 -266904913 + (A)n Simple_repeat Simple_repeat 1 33 0 583 238 104 36 chr1 15288844 15289037 -266904627 - MER63A DNA MER1_type -4 206 1 745 235 37 60 chr1 15289754 15290022 -266903642 + MIR SINE MIR 1 262 0 323 191 30 131 chr1 15290163 15290331 -266903333 - MLT1K LTR MaLR 0 588 438 456 269 123 41 chr1 15290548 15290767 -266902897 - MLT1K LTR MaLR -293 295 59 799 255 20 51 chr1 15290804 15291059 -266902605 + MIR SINE MIR 15 261 -1 378 287 7 68 chr1 15291241 15291403 -266902261 + MIR3 SINE MIR 2 153 -66 909 138 88 88 chr1 15291487 15291704 -266901960 - MER20 DNA MER1_type 0 219 3 317 195 146 12 chr1 15291714 15291796 -266901868 + MIR3 SINE MIR 71 163 -45 451 311 17 71 chr1 15292354 15292592 -266901072 + MIR SINE MIR 28 252 -10 343 364 62 10 chr1 15293055 15293250 -266900414 - MIR SINE MIR -2 260 56 488 368 35 0 chr1 15293443 15293644 -266900020 - MIR SINE MIR -34 228 21 1253 221 102 68 chr1 15293657 15294127 -266899537 - MLT1G LTR MaLR -20 570 85 473 279 17 8 chr1 15294753 15294883 -266898781 - L2 LINE L2 -5 3308 3178 384 306 38 72 chr1 15294895 15295104 -266898560 + MIR SINE MIR 10 211 -51 499 194 10 10 chr1 15295269 15295372 -266898292 - MER5A DNA MER1_type -83 106 4 328 241 12 0 chr1 15295611 15295694 -266897970 + MIR SINE MIR 63 146 -116 751 302 21 8 chr1 15295990 15296225 -266897439 - MIR SINE MIR -12 250 13 2182 81 3 3 chr1 15296251 15296685 -266896979 + AluSp SINE Alu 1 434 0 396 298 23 8 chr1 15297229 15297360 -266896304 - MIR SINE MIR -58 204 72 2284 72 0 0 chr1 15297370 15297661 -266896003 + AluSc SINE Alu 1 291 -18 622 209 129 25 chr1 15297873 15298036 -266895628 - MER5A DNA MER1_type 0 189 10 267 341 37 19 chr1 15298496 15298710 -266894954 + L2 LINE L2 2842 3059 -213 939 129 0 0 chr1 15298774 15298906 -266894758 - FLAM_C SINE Alu -1 132 1 923 215 13 66 chr1 15299150 15299378 -266894286 - MER20 DNA MER1_type -3 216 1 1572 198 0 3 chr1 15299397 15299680 -266893984 + AluJo SINE Alu 1 282 -30 312 27 0 0 chr1 15299683 15299720 -266893944 + (CA)n Simple_repeat Simple_repeat 2 38 0 186 71 0 0 chr1 15299720 15299748 -266893916 + (GA)n Simple_repeat Simple_repeat 1 28 0 2203 100 3 0 chr1 15299765 15300064 -266893600 + AluSp SINE Alu 1 300 -13 384 266 108 7 chr1 15300118 15300257 -266893407 + L2 LINE L2 3161 3313 0 257 205 9 125 chr1 15300274 15300386 -266893278 + MIR SINE MIR 157 255 -7 1214 271 72 18 chr1 15301936 15302167 -266891497 - MLT1I LTR MaLR 0 409 147 1569 110 50 0 chr1 15302167 15302386 -266891278 + MER30 DNA MER1_type 1 230 0 1214 271 72 18 chr1 15302386 15302542 -266891122 - MLT1I LTR MaLR -262 147 1 339 311 99 0 chr1 15302554 15302705 -266890959 + L1MC3 LINE L1 5713 5878 -1907 345 156 0 31 chr1 15302705 15302769 -266890895 + LTR16C LTR ERVL 430 491 0 190 254 48 32 chr1 15302807 15302870 -266890794 - L3 LINE CR1 -142 1435 1372 846 163 363 0 chr1 15302911 15303151 -266890513 + MER58B DNA MER1_type 7 333 -8 207 371 43 9 chr1 15303837 15303953 -266889711 + MER5B DNA MER1_type 5 124 -54 863 168 0 0 chr1 15303953 15304084 -266889580 - FLAM_C SINE Alu -2 131 1 2397 56 7 3 chr1 15304097 15304399 -266889265 - AluY SINE Alu -7 304 2 2711 75 6 0 chr1 15304420 15304769 -266888895 - L1PB1 LINE L1 -1 6150 5800 180 247 14 123 chr1 15304769 15304842 -266888822 + MER5A DNA MER1_type 125 189 0 350 221 88 29 chr1 15304972 15305108 -266888556 + L1ME4a LINE L1 5977 6120 -1 236 212 15 0 chr1 15305625 15305691 -266887973 + CT-rich Low_complexity Low_complexity 2 68 0 371 227 33 93 chr1 15306178 15306328 -266887336 - L2 LINE L2 0 3313 3173 2104 123 0 0 chr1 15306352 15306652 -266887012 + AluSg SINE Alu 7 306 -4 449 281 20 77 chr1 15307577 15307773 -266885891 + MIR SINE MIR 47 231 -31 255 299 89 3 chr1 15307810 15307991 -266885673 + L2 LINE L2 3002 3244 -28 249 108 0 0 chr1 15307991 15308028 -266885636 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 234 191 0 0 chr1 15308217 15308264 -266885400 - ORSL DNA AcHobo 0 275 229 187 118 255 0 chr1 15309027 15309078 -266884586 + L2 LINE L2 2578 2641 -673 418 357 18 6 chr1 15309121 15309289 -266884375 - L2 LINE L2 -208 3105 2936 2263 92 0 0 chr1 15309302 15309596 -266884068 - AluSc SINE Alu -15 294 1 432 274 55 43 chr1 15309637 15309801 -266883863 + LTR67 LTR ERVL 391 556 -1 445 194 163 5 chr1 15310098 15310217 -266883447 + MIR SINE MIR 35 166 -42 375 276 111 53 chr1 15310341 15310584 -266883080 - MLT1K LTR MaLR -172 416 160 382 125 0 0 chr1 15310585 15310639 -266883025 - MLT1L LTR MaLR -414 201 148 1915 180 19 15 chr1 15310639 15311051 -266882613 - Charlie1 DNA MER1_type 0 2761 2348 261 341 11 0 chr1 15311236 15311327 -266882337 + MIR SINE MIR 144 235 -27 291 194 32 0 chr1 15312025 15312087 -266881577 + L2 LINE L2 3206 3269 -3 310 359 8 17 chr1 15312242 15312359 -266881305 + MIR SINE MIR 34 149 -59 260 282 0 12 chr1 15312900 15312985 -266880679 + C-rich Low_complexity Low_complexity 2 85 0 334 257 59 66 chr1 15313572 15313708 -266879956 + MIR SINE MIR 77 211 -51 2345 73 0 3 chr1 15313714 15314014 -266879650 + AluY SINE Alu 1 299 -12 1159 312 94 14 chr1 15314196 15314938 -266878726 - L2 LINE L2 0 3313 2495 2405 53 0 10 chr1 15315472 15315772 -266877892 - AluY SINE Alu -14 297 1 2224 114 0 3 chr1 15316106 15316414 -266877250 - AluSq SINE Alu -6 307 1 435 281 100 6 chr1 15317042 15317202 -266876462 - MIR SINE MIR -11 251 77 279 310 9 35 chr1 15317340 15317456 -266876208 + MIR SINE MIR 32 144 -118 792 103 8 0 chr1 15317460 15317577 -266876087 + AluSg/x SINE Alu 192 309 -3 250 211 35 18 chr1 15317618 15317675 -266875989 + L2 LINE L2 3249 3306 -7 2311 97 0 0 chr1 15317997 15318308 -266875356 - AluY SINE Alu 0 311 1 1866 130 10 20 chr1 15318308 15318607 -266875057 - AluSx SINE Alu -14 298 3 2037 92 7 0 chr1 15318811 15319121 -266874543 + AluY SINE Alu 1 312 0 2104 105 0 0 chr1 15319128 15319413 -266874251 + AluSc SINE Alu 1 285 -24 324 0 0 0 chr1 15319416 15319452 -266874212 + (TAA)n Simple_repeat Simple_repeat 3 38 0 282 197 30 0 chr1 15320245 15320311 -266873353 + MER5A DNA MER1_type 5 72 -117 2071 119 0 19 chr1 15320346 15320656 -266873008 + AluJb SINE Alu 1 304 -8 307 221 221 0 chr1 15320656 15320751 -266872913 + MER5A DNA MER1_type 61 182 -7 194 316 63 47 chr1 15320828 15321018 -266872646 - L2 LINE L2 -189 3083 2891 1543 140 20 48 chr1 15321353 15321491 -266872173 + AluJo SINE Alu 6 146 -166 2126 134 0 3 chr1 15321491 15321804 -266871860 + AluSx SINE Alu 1 312 0 1543 140 20 48 chr1 15321804 15321958 -266871706 + AluJo SINE Alu 146 290 -22 1697 107 119 8 chr1 15321967 15322228 -266871436 + AluSg1 SINE Alu 3 292 -17 376 242 91 95 chr1 15322237 15322468 -266871196 + MIR SINE MIR 33 262 0 330 217 22 43 chr1 15322453 15322545 -266871119 - MIR SINE MIR -95 167 78 * 1572 143 21 38 chr1 15322996 15323283 -266870381 + AluSx SINE Alu 1 282 -30 449 34 17 0 chr1 15323283 15323342 -266870322 + (TGAA)n Simple_repeat Simple_repeat 3 62 0 797 130 198 57 chr1 15323651 15323843 -266869821 - MER20 DNA MER1_type 0 219 1 733 296 30 9 chr1 15323984 15324214 -266869450 - Charlie8 DNA MER1_type -2181 236 2 402 258 43 45 chr1 15324424 15324569 -266869095 + MIR3 SINE MIR 15 155 -65 360 294 83 50 chr1 15325028 15325119 -266868545 - MIR3 SINE MIR -18 190 103 2047 122 26 0 chr1 15325119 15325423 -266868241 + AluSx SINE Alu 1 312 0 360 294 83 50 chr1 15325423 15325511 -266868153 - MIR3 SINE MIR -105 103 5 1387 129 0 0 chr1 15325732 15325926 -266867738 - AluJb SINE Alu -118 194 1 336 290 28 48 chr1 15325950 15326095 -266867569 - Charlie8 DNA MER1_type -2269 148 7 273 273 117 31 chr1 15326099 15326227 -266867437 + MIR SINE MIR 101 239 -23 750 201 38 11 chr1 15327312 15327496 -266866168 - MER5A DNA MER1_type 0 189 1 729 225 0 94 chr1 15327939 15328152 -266865512 + MIR SINE MIR 6 198 -64 2429 59 13 0 chr1 15328154 15328459 -266865205 + AluSp SINE Alu 1 309 -4 272 298 224 12 chr1 15328956 15329117 -266864547 + MIR SINE MIR 56 250 -12 1180 175 36 20 chr1 15329134 15329385 -266864279 + MIR SINE MIR 8 262 0 2100 110 7 26 chr1 15329417 15329726 -266863938 - AluSx SINE Alu -9 303 1 1601 181 7 7 chr1 15329887 15330174 -266863490 + AluJo SINE Alu 9 295 -17 402 319 84 31 chr1 15330764 15330990 -266862674 - MIR SINE MIR -12 250 13 315 222 42 0 chr1 15330991 15331091 -266862573 + MLT1F1 LTR MaLR 4 82 -460 276 30 0 0 chr1 15331093 15331126 -266862538 + (TTCC)n Simple_repeat Simple_repeat 1 33 0 2319 97 0 3 chr1 15331126 15331436 -266862228 - AluSc SINE Alu 0 309 1 1381 233 64 77 chr1 15331444 15331658 -266862006 + MLT1F1 LTR MaLR 99 314 -253 2205 109 0 0 chr1 15331658 15331960 -266861704 + AluSx SINE Alu 6 307 -5 234 0 0 0 chr1 15331960 15331986 -266861678 + (TA)n Simple_repeat Simple_repeat 2 27 0 1381 233 64 77 chr1 15331986 15332237 -266861427 + MLT1F1 LTR MaLR 312 559 -8 2217 84 7 0 chr1 15332413 15332709 -266860955 - AluSx SINE Alu -10 302 5 1552 143 62 65 chr1 15332937 15333273 -266860391 + MER7A DNA MER2_type 13 345 -1 180 0 0 0 chr1 15333514 15333534 -266860130 + (T)n Simple_repeat Simple_repeat 1 20 0 569 225 179 7 chr1 15333860 15334011 -266859653 - MER45A DNA AcHobo -1 177 1 405 39 0 0 chr1 15334391 15334442 -266859222 + (CA)n Simple_repeat Simple_repeat 2 52 0 692 275 100 63 chr1 15334683 15334945 -266858719 + Charlie8 DNA MER1_type 72 360 -2057 1961 151 0 0 chr1 15334945 15335257 -266858407 - AluSx SINE Alu 0 312 1 692 275 100 63 chr1 15335257 15335456 -266858208 + Charlie8 DNA MER1_type 360 550 -1867 2101 74 0 0 chr1 15335790 15336059 -266857605 + AluSg SINE Alu 34 302 -8 194 0 39 0 chr1 15337292 15337318 -266856346 + (CGGGGG)n Simple_repeat Simple_repeat 3 29 0 32 26 0 0 chr1 15337463 15337502 -266856162 + GC_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr1 15337667 15337690 -266855974 + GC_rich Low_complexity Low_complexity 1 23 0 477 260 0 0 chr1 15337795 15338070 -266855594 + C-rich Low_complexity Low_complexity 1 275 0 1799 138 7 14 chr1 15338173 15338469 -266855195 + AluSx SINE Alu 9 302 -10 774 239 15 20 chr1 15338471 15338672 -266854992 + MER20 DNA MER1_type 17 216 -3 443 335 103 0 chr1 15339151 15339345 -266854319 - MIR SINE MIR -1 261 48 249 300 8 46 chr1 15340234 15340364 -266853300 - LTR67 LTR ERVL -9 548 424 21 0 0 0 chr1 15341003 15341024 -266852640 + AT_rich Low_complexity Low_complexity 1 21 0 321 309 9 36 chr1 15341032 15341142 -266852522 + MIR SINE MIR 82 188 -74 667 319 138 6 chr1 15341146 15341500 -266852164 - MLT1J LTR MaLR -1 510 110 1994 98 3 11 chr1 15341520 15341844 -266851820 + AluSx SINE Alu 1 322 0 190 176 29 0 chr1 15342841 15342875 -266850789 - MIR SINE MIR -189 73 39 364 268 50 42 chr1 15343320 15343470 -266850194 + LTR67 LTR ERVL 380 514 -9 1719 166 10 10 chr1 15343530 15343820 -266849844 + AluJb SINE Alu 7 296 -16 181 203 14 81 chr1 15344104 15344178 -266849486 + L3 LINE CR1 1508 1576 -1 2108 120 0 7 chr1 15344324 15344633 -266849031 - AluSx SINE Alu -5 307 1 945 272 79 63 chr1 15344743 15345184 -266848480 - MLT1L LTR MaLR 0 615 168 699 164 45 79 chr1 15345971 15346148 -266847516 - MER20 DNA MER1_type 0 219 49 520 278 73 48 chr1 15346256 15346529 -266847135 + L2 LINE L2 3034 3313 0 306 270 120 10 chr1 15346638 15346738 -266846926 - MIR SINE MIR -122 140 30 575 218 55 12 chr1 15347678 15347843 -266845821 + MER104 DNA MER2_type 5 176 -4 290 316 30 38 chr1 15347846 15347979 -266845685 - MIR SINE MIR -105 157 26 454 315 45 6 chr1 15348225 15348403 -266845261 - MER91A DNA MER1_type -10 186 2 1841 189 3 3 chr1 15348550 15348846 -266844818 - AluJo SINE Alu -14 298 3 196 298 53 53 chr1 15349073 15349187 -266844477 + MIR SINE MIR 20 133 -129 1549 253 102 14 chr1 15349232 15349674 -266843990 + MLT1G1 LTR MaLR 73 553 -42 251 396 9 0 chr1 15349836 15349942 -266843722 + MIR SINE MIR 141 247 -15 2020 122 37 0 chr1 15350252 15350547 -266843117 - AluSg SINE Alu -4 306 1 252 356 19 10 chr1 15350930 15351034 -266842630 + MIR SINE MIR 141 245 -17 1403 255 40 24 chr1 15352211 15352631 -266841033 - MLT1E LTR MaLR -2 591 165 302 294 0 0 chr1 15352638 15352706 -266840958 + L1MC4 LINE L1 6621 6688 -1354 327 168 39 39 chr1 15352707 15352886 -266840778 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 279 217 56 0 chr1 15352887 15352964 -266840700 - MLT1E LTR MaLR -499 94 6 314 303 89 0 chr1 15352968 15353131 -266840533 - MIR SINE MIR -66 142 2 332 293 19 9 chr1 15353275 15353381 -266840283 + L2 LINE L2 3195 3301 -12 181 167 0 0 chr1 15353378 15353408 -266840256 - L2 LINE L2 0 3313 3284 * 355 250 12 0 chr1 15353540 15353620 -266840044 + L2 LINE L2 3219 3299 -14 666 292 83 52 chr1 15354319 15354805 -266838859 - LTR33 LTR ERVL 0 521 17 2147 123 0 3 chr1 15354805 15355098 -266838566 + AluSq SINE Alu 1 292 -21 666 292 83 52 chr1 15355098 15355115 -266838549 - LTR33 LTR ERVL -504 17 2 1869 216 25 8 chr1 15355338 15355740 -266837924 + MLT2C2 LTR ERVL 1 409 -55 2243 116 3 7 chr1 15355740 15356042 -266837622 - AluSx SINE Alu -11 301 1 495 253 37 47 chr1 15356095 15356285 -266837379 - MER5A DNA MER1_type -1 188 1 2064 137 3 39 chr1 15357174 15357284 -266836380 + MLT1B LTR MaLR 1 113 -277 2034 108 14 11 chr1 15357284 15357562 -266836102 + AluSx SINE Alu 20 298 -14 2064 137 3 39 chr1 15357562 15357815 -266835849 + MLT1B LTR MaLR 113 351 -39 194 260 10 125 chr1 15357815 15357911 -266835753 - MIR SINE MIR -57 151 89 583 231 46 1 chr1 15359521 15359680 -266833984 + MER20B DNA MER1_type 33 202 -17 2443 90 0 0 chr1 15359877 15360176 -266833488 + AluSx SINE Alu 1 299 -13 234 62 0 0 chr1 15360731 15360763 -266832901 + (CAT)n Simple_repeat Simple_repeat 2 33 0 842 246 32 14 chr1 15361542 15361762 -266831902 - MIR SINE MIR -36 226 3 218 314 194 16 chr1 15361894 15362018 -266831646 + L2 LINE L2 3160 3305 -8 185 292 42 14 chr1 15362045 15362117 -266831547 - MIR SINE MIR -142 120 47 253 354 112 6 chr1 15362920 15363081 -266830583 + MIR SINE MIR 20 197 -65 1682 114 0 11 chr1 15363303 15363566 -266830098 - L1PB1 LINE L1 -1 6150 5891 265 256 23 12 chr1 15364064 15364150 -266829514 - MER117 DNA MER1_type 0 197 111 575 281 47 31 chr1 15364688 15364944 -266828720 - MLT1J LTR MaLR -19 492 233 2503 84 0 0 chr1 15365232 15365541 -266828123 - AluY SINE Alu -2 309 1 2003 135 30 10 chr1 15365556 15365735 -266827929 - AluJb SINE Alu 0 312 123 213 39 0 0 chr1 15365735 15365761 -266827903 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2003 135 30 10 chr1 15365761 15365885 -266827779 - AluJb SINE Alu -189 123 3 335 179 0 15 chr1 15365935 15366002 -266827662 + MLT1I LTR MaLR 335 400 -9 2695 171 20 22 chr1 15367013 15367227 -266826437 + L1MB7 LINE L1 5615 5828 -356 1974 156 0 10 chr1 15367227 15367522 -266826142 + AluJb SINE Alu 2 293 -19 2695 171 20 22 chr1 15367522 15367862 -266825802 + L1MB7 LINE L1 5828 6168 -16 2322 93 3 3 chr1 15368481 15368792 -266824872 - AluY SINE Alu 0 311 1 2162 130 7 3 chr1 15368932 15369233 -266824431 + AluSx SINE Alu 1 302 -10 757 243 10 20 chr1 15369235 15369437 -266824227 + MER20 DNA MER1_type 17 216 -3 416 314 108 5 chr1 15369916 15370110 -266823554 - MIR SINE MIR -1 261 48 228 300 8 46 chr1 15371000 15371130 -266822534 - LTR67 LTR ERVL -9 548 424 21 0 0 0 chr1 15371769 15371790 -266821874 + AT_rich Low_complexity Low_complexity 1 21 0 311 309 9 36 chr1 15371798 15371908 -266821756 + MIR SINE MIR 82 188 -74 636 288 133 65 chr1 15371912 15372266 -266821398 - MLT1J LTR MaLR -1 452 72 2122 98 3 11 chr1 15372286 15372610 -266821054 + AluSx SINE Alu 1 322 0 190 176 29 0 chr1 15373607 15373641 -266820023 - MIR SINE MIR -189 73 39 359 268 50 42 chr1 15374086 15374236 -266819428 + LTR67 LTR ERVL 380 514 -9 1834 166 10 10 chr1 15374296 15374586 -266819078 + AluJb SINE Alu 7 296 -16 2305 120 0 3 chr1 15375090 15375398 -266818266 - AluSx SINE Alu -5 307 1 2605 69 0 0 chr1 15375419 15375723 -266817941 - AluY SINE Alu -7 304 1 225 300 75 33 chr1 15375749 15375869 -266817795 - L2 LINE L2 -2 3311 3187 442 257 74 27 chr1 15376560 15376708 -266816956 - MIR SINE MIR -62 200 46 26 50 0 0 chr1 15377833 15377873 -266815791 + AT_rich Low_complexity Low_complexity 1 40 0 30 0 0 0 chr1 15378153 15378183 -266815481 + AT_rich Low_complexity Low_complexity 1 30 0 284 222 5 152 chr1 15378194 15378273 -266815391 - L1ME1 LINE L1 -263 5903 5814 2274 83 3 3 chr1 15378273 15378561 -266815103 - AluSp SINE Alu -25 288 1 284 222 5 152 chr1 15378561 15378613 -266815051 - L1ME1 LINE L1 -352 5814 5822 1707 148 94 4 chr1 15378613 15378780 -266814884 - AluJo SINE Alu -10 302 99 219 36 0 0 chr1 15378780 15378808 -266814856 + (TTA)n Simple_repeat Simple_repeat 1 28 0 1707 148 94 4 chr1 15378808 15378917 -266814747 - AluJo SINE Alu -213 99 1 284 222 5 152 chr1 15378917 15379022 -266814642 - L1ME1 LINE L1 -343 5823 5704 1195 182 35 117 chr1 15379022 15379391 -266814273 - MLT1A1 LTR MaLR 0 365 27 226 235 0 0 chr1 15379434 15379485 -266814179 - L1ME1 LINE L1 -510 5660 5610 1947 152 0 3 chr1 15379701 15379984 -266813680 - AluSx SINE Alu -30 282 1 559 291 87 12 chr1 15380258 15380499 -266813165 + MIR SINE MIR 4 262 0 210 345 69 0 chr1 15382065 15382152 -266811512 - L2 LINE L2 -324 2989 2897 2384 62 41 3 chr1 15382198 15382490 -266811174 + AluY SINE Alu 1 303 -8 475 250 36 0 chr1 15382658 15382770 -266810894 - MER63 DNA MER1_type -53 783 42 832 304 110 13 chr1 15382873 15383320 -266810344 + L2 LINE L2 2824 3313 0 32 0 0 0 chr1 15383930 15383962 -266809702 + GC_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr1 15383976 15383997 -266809667 + GC_rich Low_complexity Low_complexity 1 21 0 372 308 128 0 chr1 15384776 15384948 -266808716 - MIR SINE MIR -13 249 56 388 323 99 0 chr1 15385267 15385428 -266808236 + MIR SINE MIR 79 255 -7 707 269 57 46 chr1 15386615 15386897 -266806767 - L2 LINE L2 -1 3312 3028 439 290 22 0 chr1 15387323 15387461 -266806203 - MIR SINE MIR -79 183 43 2574 43 3 3 chr1 15387519 15387818 -266805846 + AluY SINE Alu 1 299 -12 555 278 68 19 chr1 15387850 15388055 -266805609 - MIR SINE MIR -43 219 5 395 83 17 0 chr1 15388698 15388758 -266804906 + (TTCC)n Simple_repeat Simple_repeat 4 64 0 2080 132 3 10 chr1 15388787 15389082 -266804582 - AluSx SINE Alu -17 295 3 311 293 54 20 chr1 15389122 15389269 -266804395 - L1M4 LINE L1 -3343 2803 2652 365 110 22 143 chr1 15389636 15389687 -266803977 - MADE1 DNA Mariner 0 80 43 2059 150 0 3 chr1 15389687 15389980 -266803684 + AluSx SINE Alu 3 294 -18 365 110 22 143 chr1 15389980 15390019 -266803645 - MADE1 DNA Mariner -37 43 1 1225 276 93 30 chr1 15390166 15390662 -266803002 + MLT1K LTR MaLR 56 582 -6 287 274 192 27 chr1 15391469 15391615 -266802049 - MIR SINE MIR -58 204 35 2323 90 3 0 chr1 15392872 15393171 -266800493 + AluSg SINE Alu 1 300 -10 454 256 110 52 chr1 15393335 15393526 -266800138 + MIR SINE MIR 18 219 -43 183 275 25 50 chr1 15393646 15393726 -266799938 + L3 LINE CR1 1396 1473 -104 1549 223 95 19 chr1 15394252 15394674 -266798990 + MLT1C LTR MaLR 6 459 -8 273 215 8 74 chr1 15394676 15394797 -266798867 + L2 LINE L2 2888 3000 -272 1876 167 7 0 chr1 15395028 15395322 -266798342 + AluJo SINE Alu 1 296 -16 318 323 21 0 chr1 15396074 15396170 -266797494 + MIR SINE MIR 94 191 -71 182 152 0 22 chr1 15396607 15396653 -266797011 + (CATAG)n Simple_repeat Simple_repeat 5 49 0 263 223 34 40 chr1 15396658 15396833 -266796831 + (CATCG)n Simple_repeat Simple_repeat 5 178 0 399 231 99 16 chr1 15396980 15397101 -266796563 - MIR SINE MIR -119 143 13 970 163 0 0 chr1 15397280 15397433 -266796231 + FRAM SINE Alu 1 153 -23 586 280 17 59 chr1 15398801 15398917 -266794747 + MIR SINE MIR 20 122 -140 1989 138 7 0 chr1 15398917 15399221 -266794443 - AluSx SINE Alu -4 308 3 586 280 17 59 chr1 15399221 15399340 -266794324 + MIR SINE MIR 122 245 -17 387 0 0 0 chr1 15400232 15400275 -266793389 + (TG)n Simple_repeat Simple_repeat 1 43 0 359 259 25 99 chr1 15400328 15400490 -266793174 - MLT1K LTR MaLR -382 206 57 258 287 59 37 chr1 15400505 15400641 -266793023 - L2 LINE L2 -940 2374 2236 251 275 174 20 chr1 15400729 15400861 -266792803 + MIR SINE MIR 26 185 -77 1000 169 106 0 chr1 15400861 15401050 -266792614 + MER3 DNA MER1_type 1 209 0 251 275 174 20 chr1 15401050 15401066 -266792598 + MIR SINE MIR 185 197 -65 960 161 0 0 chr1 15401328 15401561 -266792103 + (TGGA)n Simple_repeat Simple_repeat 1 233 0 1134 117 0 0 chr1 15401597 15401776 -266791888 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 2685 256 136 22 chr1 15401784 15403041 -266790623 - L2 LINE L2 0 3313 1862 534 31 0 0 chr1 15403067 15403131 -266790533 + (TGGA)n Simple_repeat Simple_repeat 1 64 0 208 158 26 0 chr1 15403419 15403457 -266790207 + GA-rich Low_complexity Low_complexity 2 40 0 2328 89 3 0 chr1 15403646 15403949 -266789715 + AluSp SINE Alu 1 304 -9 204 125 0 0 chr1 15404075 15404107 -266789557 + (A)n Simple_repeat Simple_repeat 1 32 0 611 238 104 36 chr1 15404200 15404393 -266789271 - MER63A DNA MER1_type -4 206 1 805 235 37 60 chr1 15405110 15405378 -266788286 + MIR SINE MIR 1 262 0 593 217 68 190 chr1 15405519 15406123 -266787541 - MLT1K LTR MaLR 0 588 59 756 255 20 51 chr1 15406160 15406415 -266787249 + MIR SINE MIR 15 261 -1 351 287 7 68 chr1 15406597 15406759 -266786905 + MIR3 SINE MIR 2 153 -66 923 138 88 88 chr1 15406843 15407060 -266786604 - MER20 DNA MER1_type 0 219 3 299 195 146 12 chr1 15407070 15407152 -266786512 + MIR3 SINE MIR 71 163 -45 417 315 17 72 chr1 15407710 15407945 -266785719 + MIR SINE MIR 28 249 -13 266 329 196 7 chr1 15408895 15409038 -266784626 + MIR SINE MIR 90 259 -3 269 357 9 9 chr1 15409217 15409329 -266784335 + MIR SINE MIR 24 135 -127 662 169 137 0 chr1 15410053 15410212 -266783452 + MER5A DNA MER1_type 5 188 -1 255 385 8 8 chr1 15410214 15410331 -266783333 - MIR SINE MIR -122 140 24 198 281 167 10 chr1 15410338 15410434 -266783230 - L2 LINE L2 -2 3311 3201 468 300 98 37 chr1 15410614 15410822 -266782842 - MIR SINE MIR -33 229 19 286 214 0 0 chr1 15411397 15411453 -266782211 - MIR SINE MIR -116 146 91 2761 156 31 11 chr1 15411591 15412039 -266781625 - MSTB2 LTR MaLR 0 457 1 242 292 139 0 chr1 15412939 15413055 -266780609 - MIR SINE MIR -33 175 45 222 344 153 6 chr1 15414118 15414275 -266779389 + L3b LINE CR1 1194 1373 -210 456 273 67 27 chr1 15414341 15414482 -266779182 + MIR SINE MIR 74 223 -39 1714 138 29 55 chr1 15414482 15414794 -266778870 + AluJb SINE Alu 1 304 -8 1727 150 102 16 chr1 15415050 15415423 -266778241 - L1MB8 LINE L1 0 6178 5774 2293 92 0 3 chr1 15415440 15415744 -266777920 - AluSx SINE Alu 0 312 10 329 265 49 39 chr1 15416921 15417023 -266776641 - L2 LINE L2 0 3272 3170 180 0 0 0 chr1 15417185 15417205 -266776459 + (CGGGG)n Simple_repeat Simple_repeat 2 21 0 21 0 0 0 chr1 15417227 15417248 -266776416 + GC_rich Low_complexity Low_complexity 1 21 0 383 308 128 0 chr1 15418028 15418200 -266775464 - MIR SINE MIR -13 249 56 348 311 102 12 chr1 15418519 15418686 -266774978 + MIR SINE MIR 79 260 -2 727 269 57 46 chr1 15419868 15420150 -266773514 - L2 LINE L2 -1 3312 3028 454 290 22 0 chr1 15420576 15420714 -266772950 - MIR SINE MIR -79 183 43 2488 46 3 0 chr1 15420772 15421076 -266772588 + AluY SINE Alu 1 305 -6 574 259 36 24 chr1 15421548 15421714 -266771950 + MIR SINE MIR 10 177 -85 21 57 0 0 chr1 15421839 15421874 -266771790 + AT_rich Low_complexity Low_complexity 1 35 0 240 318 139 8 chr1 15423128 15423257 -266770407 - MIR SINE MIR -12 250 105 218 221 38 114 chr1 15423589 15423747 -266769917 - MIR3 SINE MIR -9 199 54 1852 142 0 39 chr1 15423758 15424069 -266769595 + AluSx SINE Alu 1 299 -13 201 274 82 14 chr1 15424223 15424296 -266769368 - MER5A DNA MER1_type -111 78 1 331 238 0 25 chr1 15424361 15424441 -266769223 - FAM SINE Alu -25 150 73 386 195 172 0 chr1 15425100 15425187 -266768477 + MER3 DNA MER1_type 100 201 -8 1536 192 18 0 chr1 15425404 15425680 -266767984 - L1MB4 LINE L1 0 6180 5900 2093 120 0 3 chr1 15425695 15425996 -266767668 - AluSq SINE Alu -13 300 1 1059 195 0 0 chr1 15426236 15426410 -266767254 - FAM SINE Alu -1 174 1 2424 51 0 25 chr1 15426444 15426758 -266766906 - AluY SINE Alu -5 306 1 2372 75 3 0 chr1 15426803 15427108 -266766556 - AluSg1 SINE Alu -3 306 1 375 308 123 0 chr1 15427205 15427335 -266766329 + L3 LINE CR1 1342 1487 -90 716 129 0 0 chr1 15427834 15427960 -266765704 - AluSp/q SINE Alu 0 310 185 841 178 50 22 chr1 15428048 15428228 -266765436 + MER5A DNA MER1_type 5 189 0 187 98 0 49 chr1 15428268 15428309 -266765355 + (TCTCCC)n Simple_repeat Simple_repeat 6 44 0 260 297 79 10 chr1 15428733 15428834 -266764830 + MIR SINE MIR 57 164 -98 543 254 0 0 chr1 15428992 15429102 -266764562 - MER81 DNA DNA 0 114 5 216 286 255 0 chr1 15429241 15429339 -266764325 - L2 LINE L2 -6 3307 3185 488 212 131 7 chr1 15430702 15430839 -266762825 + MIR SINE MIR 34 187 -75 2288 90 0 0 chr1 15430863 15431163 -266762501 + AluSq SINE Alu 1 300 -13 353 218 39 13 chr1 15431386 15431464 -266762200 + MIR SINE MIR 90 169 -93 2085 129 3 0 chr1 15431565 15431875 -266761789 - AluSx SINE Alu -1 311 1 1768 130 7 20 chr1 15431877 15432176 -266761488 - AluJo SINE Alu -17 295 1 560 348 36 16 chr1 15432855 15433102 -266760562 - L3 LINE CR1 -116 1461 1210 2163 89 3 25 chr1 15433503 15433819 -266759845 - AluSx SINE Alu 0 312 4 497 16 16 0 chr1 15435593 15435655 -266758009 + (TG)n Simple_repeat Simple_repeat 2 64 0 21 0 0 0 chr1 15435674 15435695 -266757969 + AT_rich Low_complexity Low_complexity 1 21 0 603 216 174 12 chr1 15436135 15436302 -266757362 - MIR SINE MIR 0 262 69 2378 75 0 7 chr1 15436393 15436700 -266756964 + AluSx SINE Alu 1 305 -7 279 284 96 8 chr1 15437626 15437750 -266755914 + MIR SINE MIR 39 176 -32 505 329 99 0 chr1 15438538 15438760 -266754904 - MIR SINE MIR -8 254 11 227 242 16 0 chr1 15438752 15438814 -266754850 - MIR SINE MIR -106 156 94 * 1792 83 0 8 chr1 15438926 15439166 -266754498 - AluY SINE Alu 0 311 74 659 267 119 14 chr1 15440197 15440407 -266753257 + MIR SINE MIR 13 244 -18 659 225 68 55 chr1 15440758 15441253 -266752411 - MLT1K LTR MaLR -8 580 3 1903 128 14 0 chr1 15441477 15441793 -266751871 + AluSx SINE Alu 1 320 0 270 269 154 46 chr1 15443595 15443725 -266749939 + MIR SINE MIR 109 252 -10 1939 137 3 13 chr1 15444046 15444375 -266749289 - AluSx SINE Alu 0 312 5 333 0 0 0 chr1 15444843 15444880 -266748784 + (TG)n Simple_repeat Simple_repeat 2 38 0 349 114 38 76 chr1 15445099 15445178 -266748486 - L1ME2 LINE L1 0 6164 6089 313 306 160 7 chr1 15445500 15445644 -266748020 - MIR SINE MIR -65 197 32 221 293 61 0 chr1 15445668 15445750 -266747914 - L2 LINE L2 -23 3290 3204 881 292 29 16 chr1 15445984 15446227 -266747437 + MIR SINE MIR 7 252 -10 25 31 0 0 chr1 15446243 15446275 -266747389 + AT_rich Low_complexity Low_complexity 1 32 0 453 292 56 31 chr1 15446365 15446560 -266747104 - MLT1J LTR MaLR -213 298 99 538 262 82 16 chr1 15447136 15447277 -266746387 + MER3 DNA MER1_type 15 172 -37 2082 103 14 0 chr1 15447277 15447567 -266746097 + AluY SINE Alu 1 294 -17 236 304 0 0 chr1 15447567 15447636 -266746028 - MER3 DNA MER1_type -121 88 20 538 262 82 16 chr1 15447567 15447608 -266746056 + MER3 DNA MER1_type 172 209 0 238 325 0 0 chr1 15447703 15447786 -266745878 - MIR SINE MIR -87 121 39 240 256 238 17 chr1 15447860 15448049 -266745615 - MIR3 SINE MIR -21 241 15 514 159 175 0 chr1 15448523 15448649 -266745015 - MER53 DNA DNA -10 179 32 211 302 35 35 chr1 15448734 15448820 -266744844 - MIR SINE MIR -82 126 41 2285 86 0 19 chr1 15448926 15449239 -266744425 + AluSq SINE Alu 7 313 0 250 284 11 57 chr1 15449993 15450081 -266743583 - L2 LINE L2 -7 3265 3182 222 290 103 0 chr1 15450222 15450367 -266743297 - L2 LINE L2 -266 3047 2888 223 174 22 0 chr1 15451413 15451459 -266742205 + G-rich Low_complexity Low_complexity 3 49 0 408 287 120 12 chr1 15451541 15451708 -266741956 - L2 LINE L2 -35 3278 3094 321 318 71 9 chr1 15451836 15452047 -266741617 - L2 LINE L2 -246 3067 2844 699 262 36 27 chr1 15452755 15452980 -266740684 + MIR SINE MIR 8 234 -28 341 260 63 47 chr1 15454401 15454528 -266739136 - MLT1J2 LTR MaLR -2 448 320 433 262 99 0 chr1 15454575 15454716 -266738948 - MLT1J LTR MaLR -349 162 8 192 250 174 22 chr1 15455546 15455638 -266738026 + MIR SINE MIR 102 207 -55 399 243 144 35 chr1 15455855 15456028 -266737636 - MIR SINE MIR -14 248 57 269 203 76 38 chr1 15456125 15456204 -266737460 + MIR SINE MIR 13 94 -168 4372 76 21 2 chr1 15456229 15456798 -266736866 - L1PA8 LINE L1 -2 6170 5591 232 200 256 11 chr1 15456860 15456950 -266736714 + MIR SINE MIR 124 235 -27 1710 155 45 7 chr1 15457631 15457922 -266735742 - AluJb SINE Alu -10 302 1 715 189 0 57 chr1 15458101 15458276 -266735388 - L1ME4a LINE L1 -236 5885 5721 1937 179 67 77 chr1 15458360 15458575 -266735089 - Charlie1 DNA MER1_type 0 2761 2545 2128 116 7 0 chr1 15458575 15458878 -266734786 - AluSx SINE Alu -3 309 5 1937 179 67 77 chr1 15458878 15459276 -266734388 - Charlie1 DNA MER1_type -216 2545 2154 2021 112 10 7 chr1 15459276 15459571 -266734093 - AluSx SINE Alu -16 296 1 1610 173 65 127 chr1 15460050 15460524 -266733140 + MLT1D LTR MaLR 8 447 -58 3898 81 7 37 chr1 15460524 15461065 -266732599 - MER1A DNA MER1_type 0 527 3 1610 173 65 127 chr1 15461065 15461117 -266732547 + MLT1D LTR MaLR 447 501 -4 183 42 0 0 chr1 15462403 15462427 -266731237 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2108 104 0 0 chr1 15462436 15462716 -266730948 - AluSx SINE Alu -32 280 1 371 187 91 20 chr1 15462725 15462846 -266730818 - L1MC3 LINE L1 0 7769 6255 253 132 0 0 chr1 15462890 15462928 -266730736 - MLT1I LTR MaLR -274 135 98 367 351 21 38 chr1 15463560 15463718 -266729946 - MIR SINE MIR -8 254 100 2084 121 7 7 chr1 15463718 15464025 -266729639 + AluSg SINE Alu 1 307 -3 367 351 21 38 chr1 15464025 15464105 -266729559 - MIR SINE MIR -162 100 20 225 245 19 0 chr1 15464158 15464211 -266729453 + GA-rich Low_complexity Low_complexity 5 58 0 920 58 0 0 chr1 15464272 15464392 -266729272 - AluY SINE Alu 0 311 192 2215 101 3 0 chr1 15465119 15465417 -266728247 - AluSq SINE Alu -14 299 1 313 329 36 7 chr1 15465548 15465688 -266727976 - MIR SINE MIR -9 253 110 455 276 0 31 chr1 15465820 15465902 -266727762 - L2 LINE L2 0 3313 3235 3975 57 36 0 chr1 15465902 15466397 -266727267 - LTR10D LTR ERV1 0 513 1 455 276 0 31 chr1 15466397 15466441 -266727223 - L2 LINE L2 -78 3235 3191 1650 226 88 11 chr1 15466450 15466942 -266726722 - MLT1H1 LTR MaLR -4 551 3 344 322 102 23 chr1 15467014 15467356 -266726308 + L1PB4 LINE L1 5575 5943 -213 * 1375 254 85 8 chr1 15467053 15467559 -266726105 + L1ME2 LINE L1 5620 6327 -7 35 71 0 0 chr1 15468130 15468200 -266725464 + AT_rich Low_complexity Low_complexity 1 70 0 270 219 145 0 chr1 15468249 15468318 -266725346 - MIR SINE MIR -63 145 106 2418 70 0 3 chr1 15468352 15468664 -266725000 + AluY SINE Alu 1 311 0 829 189 0 7 chr1 15468759 15468912 -266724752 - AluJb SINE Alu -1 311 160 2140 80 0 11 chr1 15469374 15469660 -266724004 + AluSg SINE Alu 1 283 -27 207 0 0 0 chr1 15469664 15469687 -266723977 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1291 80 6 0 chr1 15470484 15470660 -266723004 - AluSp SINE Alu -2 311 135 1745 98 4 0 chr1 15471518 15471753 -266721911 - AluSx SINE Alu -24 288 53 501 75 15 0 chr1 15471755 15471822 -266721842 + AluSg1 SINE Alu 25 92 -217 1293 125 0 0 chr1 15471922 15472114 -266721550 + AluSg/x SINE Alu 115 306 -4 413 275 203 6 chr1 15472383 15472553 -266721111 + MIR SINE MIR 26 235 -27 2146 124 0 9 chr1 15472553 15472868 -266720796 - AluSx SINE Alu 0 312 1 413 275 203 6 chr1 15472868 15472879 -266720785 + MIR SINE MIR 235 243 -19 267 299 45 0 chr1 15474070 15474137 -266719527 - MER91A DNA MER1_type 0 196 127 594 322 16 11 chr1 15474243 15474426 -266719238 - MER91A DNA MER1_type -12 184 1 547 318 19 5 chr1 15474727 15474938 -266718726 - MIR SINE MIR -44 218 5 2096 121 10 0 chr1 15475097 15475404 -266718260 - AluSg SINE Alu 0 310 1 889 261 131 4 chr1 15476038 15476315 -266717349 + L1MC/D LINE L1 5406 5716 -698 2152 102 0 0 chr1 15476339 15476623 -266717041 + AluSq SINE Alu 1 284 -29 206 32 32 0 chr1 15476623 15476654 -266717010 + (TTAAA)n Simple_repeat Simple_repeat 3 34 0 1159 271 94 38 chr1 15476654 15476764 -266716900 + L1MC4a LINE L1 6337 6439 -1369 1729 125 35 64 chr1 15476764 15477076 -266716588 + AluSx SINE Alu 1 303 -9 1159 271 94 38 chr1 15477076 15477538 -266716126 + L1MC4a LINE L1 6439 6941 -867 2197 80 0 0 chr1 15477555 15477831 -266715833 + AluSg SINE Alu 21 296 -14 354 139 17 46 chr1 15477885 15477965 -266715699 + AluJo SINE Alu 1 59 -243 1508 167 7 7 chr1 15477966 15478236 -266715428 + AluJo SINE Alu 40 309 -3 304 183 127 0 chr1 15478257 15478328 -266715336 + L1MC4a LINE L1 7300 7357 -451 284 290 8 105 chr1 15478350 15478402 -266715262 + L1MC4 LINE L1 7542 7597 -445 2284 100 0 3 chr1 15478402 15478712 -266714952 + AluSg SINE Alu 2 310 0 284 290 8 105 chr1 15478712 15478907 -266714757 + L1MC4 LINE L1 7597 7765 -277 491 278 178 35 chr1 15479636 15479892 -266713772 - L2 LINE L2 -6 3307 3089 2282 81 0 3 chr1 15479892 15480188 -266713476 + AluSg SINE Alu 1 295 -15 491 278 178 35 chr1 15480188 15480583 -266713081 - L2 LINE L2 -224 3089 2576 2117 113 3 3 chr1 15481873 15482175 -266711489 + AluSx SINE Alu 1 302 -10 586 326 77 0 chr1 15482259 15482455 -266711209 + MIR SINE MIR 48 258 -4 408 261 72 0 chr1 15482658 15482769 -266710895 - MIR SINE MIR -70 192 74 857 182 62 84 chr1 15482834 15482888 -266710776 + MER58A DNA MER1_type 2 56 -2364 1815 145 0 3 chr1 15482888 15483203 -266710461 - AluJb SINE Alu 0 314 1 857 182 62 84 chr1 15483203 15483371 -266710293 + MER58A DNA MER1_type 56 221 -3 1748 194 120 46 chr1 15483419 15483750 -266709914 + MLT1C LTR MaLR 1 373 -94 2099 92 10 7 chr1 15483750 15484055 -266709609 + AluSx SINE Alu 1 306 -6 1748 194 120 46 chr1 15484055 15484156 -266709508 + MLT1C LTR MaLR 373 465 -2 2077 127 10 0 chr1 15485316 15485623 -266708041 - AluSx SINE Alu -2 310 1 240 62 0 62 chr1 15485623 15485671 -266707993 + L1MB3 LINE L1 6128 6172 -11 300 224 0 0 chr1 15485671 15485758 -266707906 - AluSq/x SINE Alu -168 135 66 2169 92 0 3 chr1 15486270 15486565 -266707099 + AluSp SINE Alu 4 297 -16 382 347 28 0 chr1 15487783 15487927 -266705737 + MIR SINE MIR 44 191 -71 1853 89 0 4 chr1 15488476 15488724 -266704940 + AluSx SINE Alu 55 301 -11 401 326 48 0 chr1 15488925 15489072 -266704592 + Charlie8 DNA MER1_type 37 190 -2227 305 320 50 50 chr1 15489384 15489565 -266704099 + L2 LINE L2 3075 3255 -17 421 289 104 55 chr1 15489947 15490264 -266703400 + L2 LINE L2 2833 3180 -133 2227 96 3 0 chr1 15490264 15490621 -266703043 - AluSp SINE Alu 0 313 1 421 289 104 55 chr1 15490621 15490743 -266702921 + L2 LINE L2 3180 3294 -19 434 191 24 0 chr1 15490916 15491000 -266702664 + MIR SINE MIR 58 143 -119 539 241 95 78 chr1 15491512 15491623 -266702041 - MIR SINE MIR -18 244 136 2217 101 0 3 chr1 15491623 15491931 -266701733 - AluSx SINE Alu -5 307 1 539 241 95 78 chr1 15491931 15492051 -266701613 - MIR SINE MIR -126 136 9 988 177 0 0 chr1 15492107 15492271 -266701393 + AluJo SINE Alu 123 286 -26 334 306 78 6 chr1 15492298 15492468 -266701196 + MIR3 SINE MIR 7 187 -75 2500 173 34 39 chr1 15493021 15493529 -266700135 + MLT1D LTR MaLR 1 505 0 187 336 133 8 chr1 15493653 15493781 -266699883 + MIR SINE MIR 102 245 -17 1902 154 3 0 chr1 15493903 15494201 -266699463 + AluJo SINE Alu 1 299 -13 1823 123 30 43 chr1 15494263 15494563 -266699101 + AluSx SINE Alu 3 298 -14 252 328 148 0 chr1 15494584 15494706 -266698958 + MIR SINE MIR 111 250 -12 2589 45 0 0 chr1 15494950 15495261 -266698403 - AluY SINE Alu 0 311 1 526 299 7 0 chr1 15495533 15495670 -266697994 + MIR SINE MIR 3 140 -122 360 280 59 81 chr1 15495704 15495775 -266697889 - MIR SINE MIR -34 228 157 2177 117 0 0 chr1 15495775 15496084 -266697580 + AluSx SINE Alu 1 309 -3 261 0 0 0 chr1 15496087 15496116 -266697548 + (CA)n Simple_repeat Simple_repeat 2 30 0 360 280 59 81 chr1 15496116 15496226 -266697438 - MIR SINE MIR -107 155 47 533 253 7 27 chr1 15496453 15496603 -266697061 + L1MA10 LINE L1 6186 6332 -2 402 252 114 0 chr1 15497256 15497387 -266696277 + MER104 DNA Tc2 1 146 -34 670 290 16 5 chr1 15497486 15497679 -266695985 + MIR SINE MIR 39 233 -29 483 234 57 35 chr1 15497830 15497971 -266695693 + MIR SINE MIR 50 193 -69 189 0 0 0 chr1 15498537 15498558 -266695106 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1775 159 3 20 chr1 15498585 15498886 -266694778 + AluSx SINE Alu 1 296 -16 643 212 244 5 chr1 15499639 15499856 -266693808 - L2 LINE L2 0 3313 3045 2576 45 0 3 chr1 15499856 15500165 -266693499 + AluY SINE Alu 1 308 -3 356 261 100 1 chr1 15501425 15501564 -266692100 + MIR SINE MIR 40 192 -55 2352 217 73 59 chr1 15502800 15503468 -266690196 - L1MC5 LINE L1 -35 7926 7240 2314 59 7 7 chr1 15503468 15503771 -266689893 - AluY SINE Alu -8 303 1 2352 217 73 59 chr1 15503771 15504033 -266689631 - L1MC5 LINE L1 -721 7240 6983 218 361 41 8 chr1 15504214 15504336 -266689328 - MIR SINE MIR -88 174 49 496 224 29 92 chr1 15505170 15505344 -266688320 - MIR SINE MIR -92 170 8 219 321 115 52 chr1 15505364 15505616 -266688048 - L3b LINE CR1 -125 1458 1191 1977 135 7 0 chr1 15505721 15506017 -266687647 + AluSx SINE Alu 1 298 -14 781 269 16 97 chr1 15506281 15506553 -266687111 - L2 LINE L2 -1 3312 3084 2026 122 7 7 chr1 15506553 15506856 -266686808 + AluSx SINE Alu 1 303 -9 781 269 16 97 chr1 15506856 15507006 -266686658 - L2 LINE L2 -229 3084 2924 237 273 173 0 chr1 15507297 15507407 -266686257 + MIR SINE MIR 17 145 -63 464 266 65 12 chr1 15507995 15508164 -266685500 + MIR SINE MIR 67 244 -18 2209 87 0 0 chr1 15508205 15508532 -266685132 - AluSc SINE Alu 0 309 1 227 323 53 30 chr1 15508865 15508998 -266684666 + L2 LINE L2 2561 2696 -618 282 264 58 0 chr1 15509074 15509161 -266684503 + MLT1D LTR MaLR 48 139 -366 211 125 0 62 chr1 15509175 15509223 -266684441 + (GAGAA)n Simple_repeat Simple_repeat 3 47 0 384 245 36 54 chr1 15509297 15509371 -266684293 + MLT1C LTR MaLR 345 397 -70 2121 118 0 0 chr1 15509371 15509667 -266683997 - AluSq SINE Alu -17 296 1 384 245 36 54 chr1 15509667 15509737 -266683927 + MLT1C LTR MaLR 397 467 0 348 303 138 44 chr1 15509788 15510097 -266683567 + L2 LINE L2 2878 3231 -82 2093 119 0 0 chr1 15510097 15510390 -266683274 + AluSx SINE Alu 1 293 -19 348 303 138 44 chr1 15510390 15510463 -266683201 + L2 LINE L2 3231 3296 -17 2310 78 0 0 chr1 15510603 15510897 -266682767 + AluSq SINE Alu 1 294 -19 270 344 17 14 chr1 15511990 15512132 -266681532 - MIR SINE MIR -63 145 30 734 258 83 22 chr1 15512362 15512457 -266681207 + MIR SINE MIR 15 103 -159 2108 125 0 6 chr1 15512457 15512770 -266680894 - AluSx SINE Alu -1 311 1 734 258 83 22 chr1 15512770 15512903 -266680761 + MIR SINE MIR 103 257 -5 1312 301 46 21 chr1 15513345 15513866 -266679798 - L1ME3A LINE L1 0 6170 5637 329 232 58 103 chr1 15513866 15514029 -266679635 - MIR SINE MIR -64 144 6 1702 115 163 19 chr1 15514901 15515214 -266678450 - THE1B LTR MaLR 0 364 7 339 246 186 0 chr1 15515498 15515616 -266678048 - MIR SINE MIR -108 154 15 1599 278 195 28 chr1 15516426 15517624 -266676040 - L2 LINE L2 -252 3061 1641 569 241 0 49 chr1 15518132 15518294 -266675370 - L2 LINE L2 -2 3311 3158 242 197 106 0 chr1 15518577 15518643 -266675021 - MER117 DNA MER1_type -28 169 97 264 283 22 11 chr1 15518791 15518883 -266674781 + MIR SINE MIR 20 112 -96 672 71 0 0 chr1 15518924 15519008 -266674656 + AluS SINE Alu 3 86 -226 222 277 96 12 chr1 15519514 15519597 -266674067 - MIR3 SINE MIR -14 194 105 1793 163 21 15 chr1 15519738 15520070 -266673594 - MER2 DNA MER2_type -3 342 9 191 304 98 20 chr1 15520092 15520152 -266673512 - MIR SINE MIR -123 139 85 2493 42 3 0 chr1 15520152 15520461 -266673203 - AluY SINE Alu -1 310 1 191 304 98 20 chr1 15520461 15520502 -266673162 - MIR SINE MIR -177 85 30 315 267 86 0 chr1 15520515 15520620 -266673044 + MIR3 SINE MIR 74 187 -21 207 0 0 0 chr1 15520907 15520930 -266672734 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 324 296 53 23 chr1 15522158 15522290 -266671374 - MLT1J LTR MaLR -334 177 42 326 257 97 26 chr1 15522323 15522436 -266671228 + L2 LINE L2 3179 3299 -14 211 228 44 20 chr1 15523107 15523201 -266670463 + MIR SINE MIR 37 163 -99 2045 115 23 0 chr1 15523337 15523642 -266670022 - AluSx SINE Alu 0 312 1 423 0 0 0 chr1 15524635 15524682 -266668982 + (TTGTG)n Simple_repeat Simple_repeat 3 49 0 1492 199 10 23 chr1 15524683 15524989 -266668675 - AluJb SINE Alu -10 302 1 1783 150 16 57 chr1 15525003 15525262 -266668402 - L1MB8 LINE L1 0 6178 5937 2486 71 0 0 chr1 15525262 15525573 -266668091 - AluY SINE Alu 0 311 1 1783 150 16 57 chr1 15525573 15525680 -266667984 - L1MB8 LINE L1 -241 5937 5827 1824 160 23 26 chr1 15525680 15525748 -266667916 - MER2 DNA MER2_type -1 344 277 2217 111 0 0 chr1 15525748 15526054 -266667610 + AluSx SINE Alu 1 306 -6 1824 160 23 26 chr1 15526054 15526328 -266667336 - MER2 DNA MER2_type -68 277 3 2522 207 36 15 chr1 15526331 15526819 -266666845 - L1MB8 LINE L1 -351 5827 5351 189 0 0 0 chr1 15526819 15526840 -266666824 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 2006 118 0 4 chr1 15526841 15527121 -266666543 - AluSx SINE Alu -33 279 1 2522 207 36 15 chr1 15527121 15527354 -266666310 - L1MB8 LINE L1 -826 5352 5091 186 315 21 63 chr1 15527592 15527735 -266665929 + MIR3 SINE MIR 1 137 -71 533 239 122 42 chr1 15528157 15528381 -266665283 + MIR SINE MIR 13 247 -15 309 287 38 70 chr1 15528395 15528552 -266665112 - L2 LINE L2 -135 3137 2986 1541 141 36 0 chr1 15528647 15528895 -266664769 + AluSx SINE Alu 1 257 -55 356 166 61 0 chr1 15529319 15529482 -266664182 + (CCCTG)n Simple_repeat Simple_repeat 1 173 0 506 298 78 19 chr1 15529894 15530099 -266663565 - MIR SINE MIR -37 225 9 267 319 58 0 chr1 15530458 15530596 -266663068 + MIR SINE MIR 24 169 -93 201 74 0 0 chr1 15530666 15530693 -266662971 + (TTA)n Simple_repeat Simple_repeat 2 28 0 1988 142 0 6 chr1 15531051 15531362 -266662302 + AluJb SINE Alu 1 309 -3 182 194 28 0 chr1 15531501 15531537 -266662127 - L2 LINE L2 -12 3301 3265 184 208 21 62 chr1 15531878 15531926 -266661738 - L2 LINE L2 -11 3302 3257 557 288 82 23 chr1 15532206 15532425 -266661239 - MIR SINE MIR -3 259 28 518 137 51 51 chr1 15532664 15532781 -266660883 - L1MA5A LINE L1 0 6297 6181 392 317 31 50 chr1 15533107 15533268 -266660396 - MIR3 SINE MIR -6 202 45 2021 136 0 10 chr1 15533571 15533879 -266659785 + AluSx SINE Alu 7 311 -1 2151 108 0 34 chr1 15534020 15534343 -266659321 - AluSx SINE Alu 0 312 1 2375 93 3 0 chr1 15534406 15534718 -266658946 - AluSp SINE Alu 0 313 1 581 218 75 0 chr1 15534927 15535074 -266658590 + MIR SINE MIR 65 222 -40 197 149 106 21 chr1 15535374 15535421 -266658243 + L2 LINE L2 3184 3234 -79 320 283 19 0 chr1 15535476 15535582 -266658082 - L2 LINE L2 -207 3106 2999 336 284 142 26 chr1 15535585 15535775 -266657889 - MIR SINE MIR -22 240 29 320 338 44 19 chr1 15536378 15536538 -266657126 - MIR SINE MIR -10 252 89 237 282 13 13 chr1 15536621 15536699 -266656965 - MIR SINE MIR -179 83 6 2031 51 4 4 chr1 15536713 15536967 -266656697 - AluY SINE Alu 0 311 58 1521 152 83 7 chr1 15537548 15537838 -266655826 + AluJb SINE Alu 1 312 0 279 312 65 12 chr1 15537851 15538021 -266655643 + L1ME4a LINE L1 5943 6121 0 193 293 104 0 chr1 15538098 15538204 -266655460 + MIR3 SINE MIR 9 125 -83 390 301 9 0 chr1 15538378 15538491 -266655173 + MIR SINE MIR 37 150 -112 2067 158 50 60 chr1 15538500 15538678 -266654986 - Tigger2a DNA MER2_type -2275 433 255 1874 153 49 25 chr1 15538678 15539044 -266654620 - THE1C LTR MaLR 0 375 1 2067 158 50 60 chr1 15539044 15539097 -266654567 - Tigger2a DNA MER2_type -2453 255 203 2179 118 0 6 chr1 15539097 15539411 -266654253 + AluSx SINE Alu 1 312 0 2067 158 50 60 chr1 15539411 15539615 -266654049 - Tigger2a DNA MER2_type -2505 203 1 1896 153 0 0 chr1 15540570 15540865 -266652799 + AluSx SINE Alu 1 295 -17 255 61 0 0 chr1 15541494 15541527 -266652137 + (TG)n Simple_repeat Simple_repeat 2 34 0 539 211 9 0 chr1 15541999 15542108 -266651556 - L1MB7 LINE L1 -69 6115 6006 747 187 56 45 chr1 15542448 15542646 -266651018 - MER20 DNA MER1_type -17 202 3 412 256 0 80 chr1 15542693 15542823 -266650841 + MIR SINE MIR 32 152 -110 1959 98 22 4 chr1 15542823 15543098 -266650566 + AluSx SINE Alu 1 280 -32 717 135 10 73 chr1 15543105 15543297 -266650367 + (AGTAG)n Simple_repeat Simple_repeat 1 180 0 346 269 37 19 chr1 15543433 15543541 -266650123 + MIR SINE MIR 32 141 -67 453 252 26 33 chr1 15544668 15544819 -266648845 - MIR SINE MIR -82 180 31 356 273 8 25 chr1 15544886 15545007 -266648657 - MIR SINE MIR -107 155 37 261 83 0 0 chr1 15545211 15545247 -266648417 + (TG)n Simple_repeat Simple_repeat 1 36 0 2857 90 0 6 chr1 15545247 15545612 -266648052 - THE1B LTR MaLR -1 363 1 422 187 11 0 chr1 15545623 15545714 -266647950 + (TG)n Simple_repeat Simple_repeat 1 92 0 192 333 35 23 chr1 15546550 15546637 -266647027 - L2 LINE L2 -1 3271 3184 211 299 15 15 chr1 15546751 15546818 -266646846 + MIR SINE MIR 84 150 -112 615 271 8 0 chr1 15547002 15547135 -266646529 - MIR3 SINE MIR -3 205 72 1975 117 0 7 chr1 15547481 15547763 -266645901 + AluSx SINE Alu 33 312 0 2198 92 20 0 chr1 15548276 15548570 -266645094 + AluSx SINE Alu 1 300 -12 341 319 35 9 chr1 15548680 15548796 -266644868 + MIR SINE MIR 37 155 -107 447 267 14 27 chr1 15548863 15549009 -266644655 + MIR SINE MIR 31 174 -88 789 259 43 47 chr1 15549490 15549791 -266643873 - MLT1K LTR MaLR -78 510 211 369 227 85 156 chr1 15550246 15550525 -266643139 + MIR SINE MIR 7 262 0 186 189 0 0 chr1 15550526 15550563 -266643101 + (CAT)n Simple_repeat Simple_repeat 3 39 0 250 305 48 29 chr1 15550724 15550829 -266642835 - MIR3 SINE MIR -21 187 81 334 260 91 58 chr1 15551292 15551446 -266642218 - MIR SINE MIR -90 172 14 236 353 66 0 chr1 15551449 15551571 -266642093 + L2 LINE L2 3182 3311 -2 462 275 35 55 chr1 15551665 15551820 -266641844 - L2 LINE L2 -5 3308 3156 2021 131 0 10 chr1 15551820 15552126 -266641538 + AluSg SINE Alu 1 303 -7 462 275 35 55 chr1 15552126 15552170 -266641494 - L2 LINE L2 -157 3156 3113 893 134 0 15 chr1 15552184 15552318 -266641346 - FLAM_C SINE Alu -1 132 1 314 304 183 16 chr1 15552605 15552796 -266640868 - L2 LINE L2 -661 2653 2431 328 286 0 0 chr1 15553118 15553195 -266640469 + MIR3 SINE MIR 95 171 -37 443 325 141 50 chr1 15554187 15554464 -266639200 + L1M4 LINE L1 4133 4434 -1712 1970 147 0 22 chr1 15554581 15554900 -266638764 - AluSq SINE Alu 0 313 2 297 260 21 21 chr1 15557362 15557458 -266636206 - MER5A DNA MER1_type -23 166 71 2221 101 13 0 chr1 15558101 15558409 -266635255 - AluSx SINE Alu 0 312 1 311 263 0 30 chr1 15558909 15559008 -266634656 + (CGTG)n Simple_repeat Simple_repeat 4 99 0 202 88 0 88 chr1 15559185 15559242 -266634422 + (TTTTTG)n Simple_repeat Simple_repeat 2 53 0 27 62 0 0 chr1 15561184 15561232 -266632432 + AT_rich Low_complexity Low_complexity 1 48 0 228 239 30 15 chr1 15562141 15562208 -266631456 - MER5B DNA MER1_type -110 68 1 469 251 30 18 chr1 15562243 15562410 -266631254 - MER117 DNA MER1_type -26 171 3 922 88 0 22 chr1 15562601 15562737 -266630927 + AluY SINE Alu 175 307 -4 426 287 70 0 chr1 15562808 15562937 -266630727 + MER91C DNA MER1_type 1 138 -2 614 299 185 0 chr1 15563000 15563211 -266630453 - MIR SINE MIR 0 262 13 1092 110 0 0 chr1 15563767 15563921 -266629743 + AluJb SINE Alu 128 281 -31 21 36 0 0 chr1 15563921 15563949 -266629715 + AT_rich Low_complexity Low_complexity 1 28 0 2190 121 0 9 chr1 15564321 15564636 -266629028 - AluSx SINE Alu 0 312 1 362 285 62 21 chr1 15565138 15565282 -266628382 + MIR SINE MIR 45 194 -68 961 266 34 0 chr1 15565648 15565885 -266627779 - MIR SINE MIR -12 250 6 264 320 33 40 chr1 15566297 15566423 -266627241 + MER5A DNA MER1_type 1 146 -43 253 321 0 28 chr1 15566724 15566830 -266626834 - MIR SINE MIR -138 124 22 216 330 44 22 chr1 15567119 15567210 -266626454 + MIR SINE MIR 49 141 -67 586 318 30 0 chr1 15567788 15567989 -266625675 + MIR SINE MIR 16 222 -40 343 280 30 0 chr1 15568046 15568146 -266625518 - MIR SINE MIR -70 192 90 336 275 154 7 chr1 15568183 15568332 -266625332 - MIR3 SINE MIR -15 193 23 489 250 38 25 chr1 15568373 15568533 -266625131 - MER103 DNA DNA -3 163 2 356 306 175 1 chr1 15569437 15569601 -266624063 + MIR SINE MIR 7 197 -62 229 238 0 32 chr1 15569707 15569770 -266623894 + MIR SINE MIR 84 144 -118 472 301 137 0 chr1 15570026 15570245 -266623419 - MER102a DNA MER1_type -5 325 77 220 211 58 0 chr1 15570964 15571016 -266622648 - L2 LINE L2 -17 3255 3201 273 325 0 0 chr1 15571019 15571102 -266622562 - L2 LINE L2 0 3272 3190 185 333 0 43 chr1 15571152 15571215 -266622449 - MIR SINE MIR -74 134 75 2018 121 35 0 chr1 15571215 15571505 -266622159 + AluSx SINE Alu 2 301 -11 185 333 0 43 chr1 15571505 15571534 -266622130 - MIR SINE MIR -133 75 46 560 186 53 0 chr1 15573969 15574082 -266619582 + MER20 DNA MER1_type 101 219 0 198 118 0 0 chr1 15574211 15574245 -266619419 + (TCCC)n Simple_repeat Simple_repeat 4 37 0 601 202 120 66 chr1 15574284 15574467 -266619197 - MER63A DNA MER1_type 0 210 18 284 323 113 57 chr1 15574472 15574643 -266619021 - L2 LINE L2 -45 3227 3067 237 33 0 0 chr1 15574643 15574673 -266618991 + (TG)n Simple_repeat Simple_repeat 2 31 0 284 323 113 57 chr1 15574673 15575160 -266618504 - L2 LINE L2 -205 3067 2542 21 71 0 0 chr1 15575556 15575598 -266618066 + AT_rich Low_complexity Low_complexity 1 42 0 1747 119 12 0 chr1 15575765 15576017 -266617647 - AluSx SINE Alu -3 309 55 196 311 33 0 chr1 15576017 15576078 -266617586 - MER5A DNA MER1_type -118 71 9 212 241 0 0 chr1 15576738 15576796 -266616868 + (TCTCTG)n Simple_repeat Simple_repeat 1 58 0 357 242 60 103 chr1 15577447 15577699 -266615965 + L1MEd LINE L1 269 509 -5863 622 231 128 88 chr1 15577819 15578287 -266615377 + L1MEd LINE L1 849 1335 -5037 703 170 4 145 chr1 15578291 15578408 -266615256 - MER3 DNA MER1_type -6 203 134 2123 115 0 0 chr1 15578408 15578703 -266614961 - AluSx SINE Alu -11 301 7 703 170 4 145 chr1 15578703 15578820 -266614844 - MER3 DNA MER1_type -75 134 2 361 304 81 39 chr1 15578820 15579063 -266614601 + L1MEd LINE L1 1265 1496 -4886 2294 66 3 0 chr1 15579063 15579352 -266614312 - AluSq SINE Alu -23 290 1 361 304 81 39 chr1 15579352 15579703 -266613961 + L1MEd LINE L1 1496 1938 -4444 22 0 0 0 chr1 15579827 15579849 -266613815 + AT_rich Low_complexity Low_complexity 1 22 0 1007 204 22 0 chr1 15579943 15580124 -266613540 - MER5A DNA MER1_type -2 187 3 1391 171 43 37 chr1 15580238 15580474 -266613190 - MER33 DNA MER1_type -2261 324 84 2015 105 34 7 chr1 15580474 15580768 -266612896 - AluSx SINE Alu -10 302 1 1391 171 43 37 chr1 15580768 15580853 -266612811 - MER33 DNA MER1_type -2501 84 1 625 360 5 6 chr1 15580903 15581120 -266612544 - MIR SINE MIR -15 247 32 903 152 58 18 chr1 15581200 15581371 -266612293 - MER58A DNA MER1_type -45 179 2 204 167 0 0 chr1 15582047 15582095 -266611569 + (CA)n Simple_repeat Simple_repeat 1 48 0 424 315 48 48 chr1 15582811 15583141 -266610523 - MER65A LTR ERV1 -115 330 1 279 226 0 0 chr1 15583184 15583237 -266610427 - MIR SINE MIR -93 169 117 188 147 0 0 chr1 15583920 15583954 -266609710 - MIR SINE MIR -123 139 106 203 250 0 0 chr1 15584174 15584230 -266609434 + (CA)n Simple_repeat Simple_repeat 1 56 0 1998 117 19 19 chr1 15584417 15584725 -266608939 - AluY SINE Alu -3 308 1 240 190 116 33 chr1 15584887 15585008 -266608656 - L1ME4a LINE L1 -6 6115 5985 2415 64 6 6 chr1 15585143 15585456 -266608208 - AluSp SINE Alu 0 313 1 336 64 0 0 chr1 15585525 15585572 -266608092 + (TTTTG)n Simple_repeat Simple_repeat 1 47 0 1687 161 0 11 chr1 15585576 15585856 -266607808 - AluSx SINE Alu -35 277 1 392 297 89 1 chr1 15586069 15586268 -266607396 + L1MC4a LINE L1 5638 5812 -309 503 202 156 18 chr1 15586412 15586661 -266607003 - MER4C LTR ERV1 0 610 157 1673 126 75 36 chr1 15586674 15587007 -266606657 - MER4A LTR ERV1 -318 346 1 1583 176 44 78 chr1 15589618 15590005 -266603659 - MLT1A2 LTR MaLR 0 374 1 182 257 50 69 chr1 15590166 15590267 -266603397 + MIR3 SINE MIR 104 202 -6 196 223 58 16 chr1 15590439 15590516 -266603148 + MIR SINE MIR 82 142 -66 2025 127 3 0 chr1 15590618 15590909 -266602755 + AluSq SINE Alu 1 292 -21 506 290 119 0 chr1 15591043 15591219 -266602445 - MIR SINE MIR -7 255 59 241 309 81 65 chr1 15591963 15592209 -266601455 - L2 LINE L2 -57 3215 2966 226 291 128 50 chr1 15592317 15592496 -266601168 - L2 LINE L2 -3 3310 3118 473 283 69 26 chr1 15592712 15592945 -266600719 - L2 LINE L2 -494 2820 2578 528 187 7 13 chr1 15594242 15594397 -266599267 + CT-rich Low_complexity Low_complexity 1 154 0 383 207 29 0 chr1 15594928 15595068 -266598596 + (TCCA)n Simple_repeat Simple_repeat 3 146 0 24 0 0 0 chr1 15595288 15595312 -266598352 + AT_rich Low_complexity Low_complexity 1 24 0 205 316 60 45 chr1 15595364 15595497 -266598167 - L2 LINE L2 -213 3059 2925 201 291 76 13 chr1 15595823 15595902 -266597762 + MIR SINE MIR 20 103 -105 1880 108 0 28 chr1 15596060 15596348 -266597316 + AluSg SINE Alu 1 280 -30 290 255 21 21 chr1 15597392 15597486 -266596178 - MIR SINE MIR -104 158 65 359 331 44 0 chr1 15597870 15598006 -266595658 - MIR SINE MIR -62 200 59 2533 234 6 28 chr1 15598006 15598689 -266594975 - L1M4 LINE L1 -2261 3885 3218 247 292 0 0 chr1 15598754 15598819 -266594845 - MIR3 SINE MIR -33 175 111 297 322 56 39 chr1 15598891 15599071 -266594593 + MER5A DNA MER1_type 6 188 -1 1850 175 3 7 chr1 15599079 15599387 -266594277 + AluJo SINE Alu 1 307 -5 234 137 59 20 chr1 15600139 15600190 -266593474 - MIR SINE MIR -138 70 18 741 271 13 38 chr1 15600530 15600766 -266592898 + MIR SINE MIR 30 259 -3 425 302 0 62 chr1 15600837 15601029 -266592635 + MIR SINE MIR 49 228 -34 328 339 52 6 chr1 15601478 15601652 -266592012 + MIR SINE MIR 58 239 -23 1810 147 57 0 chr1 15602184 15602463 -266591201 + AluJb SINE Alu 1 295 -17 289 276 41 0 chr1 15602483 15602581 -266591083 - MIR SINE MIR -62 146 45 672 209 0 0 chr1 15602661 15602838 -266590826 + (TG)n Simple_repeat Simple_repeat 2 178 0 792 186 4 4 chr1 15602869 15603647 -266590017 + (TG)n Simple_repeat Simple_repeat 1 778 0 246 261 15 0 chr1 15603647 15603712 -266589952 - MIR SINE MIR -62 200 135 307 321 28 9 chr1 15603829 15603952 -266589712 + MIR3 SINE MIR 29 155 -53 293 0 0 26 chr1 15604341 15604379 -266589285 + (TTG)n Simple_repeat Simple_repeat 2 38 0 1835 102 8 42 chr1 15604395 15604659 -266589005 - AluSx SINE Alu -57 255 1 1028 208 0 32 chr1 15604757 15604978 -266588686 - MER58A DNA MER1_type -9 215 2 470 293 113 9 chr1 15605158 15605380 -266588284 + MIR SINE MIR 1 245 -17 405 0 0 0 chr1 15605411 15605456 -266588208 + (TG)n Simple_repeat Simple_repeat 2 46 0 285 310 43 48 chr1 15605844 15606031 -266587633 + MER5A DNA MER1_type 4 189 0 609 203 31 126 chr1 15606293 15606554 -266587110 + MER106B DNA MER1_type 1 1059 0 760 248 24 67 chr1 15606667 15606749 -266586915 - MIR SINE MIR 0 262 178 1479 98 39 0 chr1 15606749 15606952 -266586712 - AluSg/x SINE Alu -18 294 84 760 248 24 67 chr1 15606952 15607123 -266586541 - MIR SINE MIR -84 178 20 201 182 239 0 chr1 15607381 15607469 -266586195 - MIR SINE MIR -79 183 75 292 279 93 16 chr1 15608788 15608917 -266584747 + MIR SINE MIR 67 205 -57 417 304 68 19 chr1 15611150 15611311 -266582353 - MIR SINE MIR -62 200 32 296 253 81 0 chr1 15611699 15611786 -266581878 - MER5A DNA MER1_type -87 102 9 314 255 137 0 chr1 15612228 15612330 -266581334 - L2 LINE L2 -243 3070 2955 189 305 183 0 chr1 15612335 15612417 -266581247 - L2 LINE L2 -43 3229 3133 1849 149 40 7 chr1 15612453 15612749 -266580915 - AluJo SINE Alu -6 306 1 210 222 37 0 chr1 15612869 15612923 -266580741 - L2 LINE L2 -338 2975 2920 211 286 184 7 chr1 15613660 15613807 -266579857 - MIR SINE MIR -44 218 46 967 209 14 24 chr1 15614214 15614425 -266579239 - MER3 DNA MER1_type 0 209 1 698 147 0 0 chr1 15614581 15614690 -266578974 + MSTB LTR MaLR 1 109 -319 818 60 0 0 chr1 15614690 15614790 -266578874 - AluY SINE Alu 0 311 212 1267 168 37 144 chr1 15614790 15615164 -266578500 + MSTB LTR MaLR 93 426 0 677 306 52 41 chr1 15615174 15615517 -266578147 - MLT1K LTR MaLR -28 560 214 960 131 0 14 chr1 15615942 15616087 -266577577 - FLAM_C SINE Alu 0 143 1 822 186 0 14 chr1 15616097 15616242 -266577422 - MER20 DNA MER1_type -74 145 3 523 276 56 20 chr1 15616243 15616439 -266577225 - MIR SINE MIR -54 208 6 2209 116 0 0 chr1 15616763 15617055 -266576609 - AluSx SINE Alu 0 312 21 241 203 104 38 chr1 15617238 15617369 -266576295 + MIR SINE MIR 34 187 -21 1644 201 60 5 chr1 15618204 15618572 -266575092 - MLT1B LTR MaLR 0 390 3 1543 148 45 36 chr1 15618857 15619388 -266574276 + LTR36 LTR ERV1 2 611 0 225 218 18 36 chr1 15619762 15619817 -266573847 - L2 LINE L2 0 3272 3219 2377 90 0 10 chr1 15620637 15620938 -266572726 - AluSx SINE Alu -14 298 1 471 258 138 6 chr1 15621160 15621327 -266572337 - MIR SINE MIR -26 236 48 400 275 63 14 chr1 15621336 15621456 -266572208 - L3 LINE CR1 -544 1033 907 268 325 35 35 chr1 15621456 15621570 -266572094 + MER5B DNA MER1_type 3 116 -62 213 276 82 20 chr1 15621586 15621684 -266571980 - MER5A DNA MER1_type -47 142 39 1414 199 67 103 chr1 15622538 15623060 -266570604 + MLT1D LTR MaLR 3 505 0 1499 171 142 67 chr1 15623152 15623526 -266570138 - MER93a LTR ERV1 0 402 1 512 200 0 0 chr1 15623553 15623638 -266570026 + AluJ/FLAM SINE Alu 2 86 -226 1246 218 115 91 chr1 15623719 15623908 -266569756 + MLT1F1 LTR MaLR 7 190 -377 243 0 0 0 chr1 15623908 15623935 -266569729 + (TG)n Simple_repeat Simple_repeat 2 28 0 1246 218 115 91 chr1 15623935 15624275 -266569389 + MLT1F1 LTR MaLR 190 565 -2 690 248 6 12 chr1 15624444 15624605 -266569059 - MIR SINE MIR 0 262 103 809 154 0 0 chr1 15624638 15624761 -266568903 - FLAM_A SINE Alu -10 123 1 2268 113 7 0 chr1 15625221 15625514 -266568150 - AluSx SINE Alu -15 297 3 441 0 0 0 chr1 15625616 15625665 -266567999 + (CA)n Simple_repeat Simple_repeat 2 50 0 657 145 34 0 chr1 15625666 15625783 -266567881 - FLAM_C SINE Alu -21 122 2 193 266 25 25 chr1 15626347 15626426 -266567238 - MER5A DNA MER1_type 0 189 111 2490 102 19 8 chr1 15626454 15626825 -266566839 + THE1C LTR MaLR 1 375 0 353 282 94 40 chr1 15626835 15626984 -266566680 - MER5B DNA MER1_type -21 157 1 211 244 0 0 chr1 15627121 15627166 -266566498 + (TTA)n Simple_repeat Simple_repeat 2 46 0 634 293 78 23 chr1 15627254 15627510 -266566154 + MLT1K LTR MaLR 181 450 -138 567 237 37 32 chr1 15627517 15627707 -266565957 - L2 LINE L2 -349 2965 2775 2292 97 0 17 chr1 15627707 15628007 -266565657 - AluSx SINE Alu -17 295 1 1185 150 38 0 chr1 15628057 15628270 -266565394 + L1PA16 LINE L1 5946 6166 0 7706 78 14 3 chr1 15628419 15629378 -266564286 - LTR5 LTR ERVK 0 969 1 489 284 60 0 chr1 15629385 15629519 -266564145 + MIR3 SINE MIR 32 173 -35 2118 121 0 0 chr1 15629635 15629939 -266563725 - AluSx SINE Alu 0 308 5 1996 247 17 19 chr1 15630148 15630612 -266563052 + L1ME3 LINE L1 5633 6097 -65 2349 107 0 0 chr1 15630612 15630910 -266562754 + AluSq SINE Alu 1 298 -15 1996 247 17 19 chr1 15630910 15630976 -266562688 + L1ME3 LINE L1 6097 6162 0 300 154 0 0 chr1 15631602 15631654 -266562010 + (TCTA)n Simple_repeat Simple_repeat 1 52 0 1395 115 0 0 chr1 15631654 15631836 -266561828 - AluSg/x SINE Alu -19 293 112 1382 86 11 0 chr1 15631835 15632009 -266561655 - AluSq SINE Alu -137 176 1 * 613 253 13 0 chr1 15632080 15632234 -266561430 - MIR SINE MIR -99 163 8 2399 116 7 0 chr1 15632418 15632769 -266560895 + AluSx SINE Alu 1 353 0 227 265 31 41 chr1 15633701 15633799 -266559865 + MIR SINE MIR 48 144 -118 2277 105 3 0 chr1 15634454 15634750 -266558914 + AluSg SINE Alu 1 297 -13 405 284 142 42 chr1 15634765 15635026 -266558638 - MER102b DNA MER1_type -51 290 4 962 224 46 25 chr1 15635425 15635666 -266557998 - L1MD2 LINE L1 -12 6347 6102 1510 172 71 88 chr1 15635669 15635754 -266557910 - L1MD2 LINE L1 -203 6156 6071 2204 117 0 23 chr1 15635754 15636062 -266557602 + AluSx SINE Alu 1 301 -11 1510 172 71 88 chr1 15636062 15636078 -266557586 - L1MD2 LINE L1 -288 6071 6056 5195 88 10 19 chr1 15636078 15636887 -266556777 + L1MA3 LINE L1 5504 6305 0 1510 172 71 88 chr1 15636887 15637124 -266556540 - L1MD2 LINE L1 -303 6056 5824 2002 143 0 13 chr1 15637124 15637431 -266556233 - AluSx SINE Alu -9 303 1 1510 172 71 88 chr1 15637431 15637543 -266556121 - L1MD2 LINE L1 -535 5824 5712 442 252 0 10 chr1 15637716 15637819 -266555845 - L2 LINE L2 -5 3308 3207 417 342 0 0 chr1 15637827 15637944 -266555720 - MIR SINE MIR -62 146 30 1848 155 10 3 chr1 15638066 15638357 -266555307 - AluJb SINE Alu -19 293 1 950 184 43 19 chr1 15638366 15638573 -266555091 + MER20 DNA MER1_type 7 218 -1 606 258 94 30 chr1 15640047 15640295 -266553369 + MIR SINE MIR 5 262 0 1373 163 0 23 chr1 15640578 15640799 -266552865 + AluJo SINE Alu 6 221 -91 381 227 189 0 chr1 15640993 15641125 -266552539 + MLT1L LTR MaLR 133 289 -326 1782 170 0 30 chr1 15641891 15642191 -266551473 + AluJo SINE Alu 1 291 -21 2134 107 27 10 chr1 15642507 15642806 -266550858 + AluSx SINE Alu 1 304 -8 431 319 40 28 chr1 15642834 15643085 -266550579 - L1MC4a LINE L1 -1923 5885 5632 438 285 22 95 chr1 15643325 15643504 -266550160 - MIR SINE MIR -48 214 49 1956 173 58 78 chr1 15643647 15644162 -266549502 - MLT1D LTR MaLR 0 505 1 500 304 110 0 chr1 15644174 15644365 -266549299 + MIR SINE MIR 7 218 -44 209 188 21 21 chr1 15644960 15645008 -266548656 - L2 LINE L2 -1 3312 3265 499 305 57 24 chr1 15645070 15645280 -266548384 + MIR SINE MIR 21 237 -25 201 243 0 0 chr1 15646471 15646508 -266547156 + (CACG)n Simple_repeat Simple_repeat 1 37 0 24 0 0 0 chr1 15647211 15647235 -266546429 + GC_rich Low_complexity Low_complexity 1 24 0 348 116 227 0 chr1 15648443 15648520 -266545144 + MIR SINE MIR 70 171 -37 236 244 37 0 chr1 15648668 15648750 -266544914 - L2 LINE L2 -283 2989 2905 329 250 43 33 chr1 15648852 15648944 -266544720 - L2 LINE L2 -6 3307 3215 202 351 0 0 chr1 15648957 15649014 -266544650 - L2 LINE L2 -576 2738 2682 576 209 72 7 chr1 15649756 15649909 -266543755 - MIR3 SINE MIR -11 197 35 367 304 152 0 chr1 15650442 15650580 -266543084 - MIR3 SINE MIR -10 198 40 767 153 0 0 chr1 15651056 15651174 -266542490 - FLAM_C SINE Alu -15 118 1 409 290 75 11 chr1 15651891 15652077 -266541587 - MER112 DNA MER1_type -29 231 34 2126 87 0 0 chr1 15652629 15652893 -266540771 - AluSc SINE Alu -2 307 44 2393 117 0 0 chr1 15653347 15653654 -266540010 - AluSx SINE Alu -4 308 2 291 323 61 24 chr1 15654033 15654197 -266539467 - L2 LINE L2 -191 3081 2912 2068 131 10 0 chr1 15654306 15654597 -266539067 + AluSx SINE Alu 1 294 -18 3286 142 20 12 chr1 15654603 15654666 -266538998 + L1MB3 LINE L1 5587 5648 -535 1110 159 269 45 chr1 15654666 15654738 -266538926 - MSTB1 LTR MaLR 0 432 377 2256 80 28 0 chr1 15654738 15655024 -266538640 + AluSc SINE Alu 1 294 -15 1110 159 269 45 chr1 15655024 15655248 -266538416 - MSTB1 LTR MaLR -55 377 204 2164 125 10 0 chr1 15655248 15655543 -266538121 - AluSx SINE Alu -14 298 1 1110 159 269 45 chr1 15655543 15655598 -266538066 - MSTB1 LTR MaLR -228 204 1 3286 142 20 12 chr1 15655598 15656124 -266537540 + L1MB3 LINE L1 5648 6181 -2 357 270 22 113 chr1 15656167 15656352 -266537312 - L2 LINE L2 -6 3307 3140 335 228 119 40 chr1 15656644 15656745 -266536919 + L1ME4a LINE L1 5628 5736 -385 2684 172 21 71 chr1 15656791 15656930 -266536734 - L1MD3 LINE L1 -2 7993 7849 2331 82 0 4 chr1 15656930 15657211 -266536453 - AluSx SINE Alu -32 280 1 2684 172 21 71 chr1 15657211 15657680 -266535984 - L1MD3 LINE L1 -146 7849 7415 304 290 85 80 chr1 15657707 15657873 -266535791 + L1ME4a LINE L1 5109 5278 -868 2603 78 0 0 chr1 15657873 15658182 -266535482 - AluSc SINE Alu 0 309 1 304 290 85 80 chr1 15658182 15658239 -266535425 + L1ME4a LINE L1 5278 5333 -813 745 214 65 0 chr1 15658251 15658405 -266535259 + AluJb SINE Alu 137 300 -12 26 30 0 0 chr1 15658517 15658550 -266535114 + AT_rich Low_complexity Low_complexity 1 33 0 318 361 64 5 chr1 15658691 15658910 -266534754 + L1ME4a LINE L1 5631 5862 -259 588 107 24 0 chr1 15658942 15659026 -266534638 + AluSg/x SINE Alu 204 289 -21 310 271 124 38 chr1 15659031 15659241 -266534423 + L1ME4a LINE L1 5888 6115 -6 2160 133 7 0 chr1 15659520 15659821 -266533843 + AluSx SINE Alu 1 303 -9 2032 203 74 25 chr1 15659835 15660127 -266533537 - L1ME1 LINE L1 -15 6151 5875 2701 51 0 0 chr1 15660127 15660438 -266533226 + AluY SINE Alu 1 311 0 2032 203 74 25 chr1 15660438 15660696 -266532968 - L1ME1 LINE L1 -291 5875 5574 357 262 71 76 chr1 15660992 15661202 -266532462 - HAL1 LINE L1 0 2507 2299 210 244 0 0 chr1 15661429 15661470 -266532194 + polypurine Low_complexity Low_complexity 3 43 0 274 98 0 59 chr1 15662137 15662188 -266531476 - MLT1J1 LTR MaLR -113 333 286 265 176 0 0 chr1 15662233 15662284 -266531380 - MIR SINE MIR -171 91 41 239 309 154 45 chr1 15662726 15663063 -266530601 + L1ME4a LINE L1 5731 6104 -17 1673 113 169 15 chr1 15663428 15663694 -266529970 - AluSx SINE Alu -5 307 1 651 144 0 9 chr1 15663695 15663806 -266529858 - L1MB4 LINE L1 -40 6140 6031 2172 55 0 0 chr1 15663816 15664069 -266529595 - AluY SINE Alu -18 293 41 733 154 9 154 chr1 15664098 15664318 -266529346 - MER5A DNA MER1_type -1 188 1 355 268 65 16 chr1 15664366 15664489 -266529175 - MLT2E LTR ERVL -12 616 488 1465 220 94 3 chr1 15664522 15664863 -266528801 - MLT2E LTR ERVL -256 372 1 477 253 40 27 chr1 15665001 15665151 -266528513 + MER5A DNA MER1_type 38 189 0 2053 135 0 35 chr1 15665178 15665490 -266528174 + AluJb SINE Alu 3 303 -9 252 207 23 23 chr1 15665490 15665577 -266528087 + GA-rich Low_complexity Low_complexity 1 87 0 406 254 9 18 chr1 15665607 15665719 -266527945 + MIR SINE MIR 15 121 -87 1425 226 0 0 chr1 15665729 15665994 -266527670 + Tigger7 DNA MER2_type 1 265 -468 449 151 0 0 chr1 15666009 15666082 -266527582 + Tigger7 DNA MER2_type 2501 2573 -14 2587 71 3 3 chr1 15666293 15666602 -266527062 - AluSq SINE Alu -4 309 1 1661 191 17 7 chr1 15667326 15667624 -266526040 - AluJo SINE Alu -11 301 1 1479 168 75 46 chr1 15667723 15668069 -266525595 - MLT1A2 LTR MaLR -11 363 8 2342 122 0 0 chr1 15668199 15668511 -266525153 + AluSq SINE Alu 1 312 -1 614 296 178 15 chr1 15668580 15668614 -266525050 + L2 LINE L2 2921 2948 -365 2337 108 22 11 chr1 15668614 15668974 -266524690 - THE1B LTR MaLR 0 364 1 614 296 178 15 chr1 15668974 15669277 -266524387 + L2 LINE L2 2948 3313 0 183 267 12 93 chr1 15669728 15669814 -266523850 + L2 LINE L2 3229 3307 -6 452 273 181 42 chr1 15670150 15670388 -266523276 - Charlie8 DNA MER1_type -2142 275 5 198 0 0 0 chr1 15670770 15670792 -266522872 + (ATTG)n Simple_repeat Simple_repeat 2 23 0 430 277 73 7 chr1 15671463 15671600 -266522064 - MER5A DNA MER1_type -4 185 40 377 235 12 0 chr1 15671714 15671799 -266521865 - MIR SINE MIR -96 166 81 1093 234 105 72 chr1 15672254 15672583 -266521081 + L1ME2 LINE L1 5594 5950 -214 1992 144 10 3 chr1 15672583 15672882 -266520782 + AluJb SINE Alu 1 301 -11 1093 234 105 72 chr1 15672882 15673095 -266520569 + L1ME2 LINE L1 5950 6154 -10 207 268 49 41 chr1 15673108 15673231 -266520433 - MER5A DNA MER1_type -49 140 17 282 325 17 26 chr1 15673699 15673816 -266519848 + MIR SINE MIR 56 171 -91 651 262 82 0 chr1 15673853 15674036 -266519628 - MIR SINE MIR -64 198 1 656 294 22 0 chr1 15674174 15674358 -266519306 + MIR SINE MIR 75 262 0 2203 110 0 3 chr1 15674961 15675289 -266518375 + AluSp SINE Alu 3 329 0 478 248 44 22 chr1 15675338 15675475 -266518189 + MIR SINE MIR 48 187 -75 427 248 16 7 chr1 15675555 15675689 -266517975 + MIR SINE MIR 52 146 -62 2025 145 0 14 chr1 15675847 15676144 -266517520 - AluSx SINE Alu -19 293 1 405 258 62 113 chr1 15676417 15676692 -266516972 + MIR SINE MIR 2 262 0 198 204 23 0 chr1 15677039 15677083 -266516581 - MER5A DNA MER1_type -84 105 61 270 136 0 0 chr1 15677083 15677127 -266516537 + (TTCC)n Simple_repeat Simple_repeat 1 44 0 2070 91 54 0 chr1 15677130 15677406 -266516258 - AluSc SINE Alu -18 291 1 185 208 151 0 chr1 15677407 15677460 -266516204 - MER5A DNA MER1_type -120 69 9 * 662 327 92 6 chr1 15677455 15677801 -266515863 - L2 LINE L2 -446 2868 2493 1034 183 39 10 chr1 15677872 15678080 -266515584 + MER20 DNA MER1_type 6 219 0 322 245 11 43 chr1 15678460 15678554 -266515110 - MIR3 SINE MIR -3 205 115 231 262 136 19 chr1 15679621 15679724 -266513940 + MIR SINE MIR 92 206 -56 250 303 122 25 chr1 15679731 15679969 -266513695 - L2 LINE L2 -475 2839 2579 529 258 177 39 chr1 15681156 15681489 -266512175 - MLT1K LTR MaLR -73 515 137 1965 121 3 52 chr1 15682132 15682437 -266511227 - AluSx SINE Alu -22 290 1 349 344 26 0 chr1 15683227 15683378 -266510286 + MIR SINE MIR 13 167 -95 1814 181 66 97 chr1 15683650 15683857 -266509807 + MLT1D LTR MaLR 1 213 -292 2297 113 0 0 chr1 15683857 15684168 -266509496 - AluY SINE Alu 0 311 1 1814 181 66 97 chr1 15684168 15684463 -266509201 + MLT1D LTR MaLR 213 487 -18 258 343 10 0 chr1 15684613 15684712 -266508952 - MIR SINE MIR -99 163 64 2333 101 3 7 chr1 15685524 15685832 -266507832 - AluSg1 SINE Alu -2 307 1 2170 83 87 14 chr1 15686649 15686938 -266506726 - AluSx SINE Alu -2 310 1 363 235 50 34 chr1 15687099 15687218 -266506446 - L2 LINE L2 0 3313 3193 745 192 91 19 chr1 15687225 15687433 -266506231 - Charlie5 DNA MER1_type -30 2582 2360 990 173 53 74 chr1 15687951 15687993 -266505671 - MER33 DNA MER1_type -2261 324 283 2069 131 3 31 chr1 15687993 15688313 -266505351 - AluJb SINE Alu -1 311 1 990 173 53 74 chr1 15688313 15688553 -266505111 - MER33 DNA MER1_type -2302 283 48 226 279 207 0 chr1 15688773 15688884 -266504780 - MIR SINE MIR -112 150 17 614 263 6 38 chr1 15689300 15689460 -266504204 - MER63A DNA MER1_type -2 208 54 279 79 0 0 chr1 15689460 15689498 -266504166 + (TG)n Simple_repeat Simple_repeat 1 38 0 620 224 0 0 chr1 15689618 15689734 -266503930 - FLAM_C SINE Alu -26 117 2 1043 262 191 10 chr1 15690048 15690457 -266503207 - MLT1K LTR MaLR -97 491 9 252 160 0 0 chr1 15690766 15690821 -266502843 - MIR SINE MIR -108 154 101 1507 239 69 50 chr1 15691011 15691489 -266502175 - MLT1J LTR MaLR -10 501 15 2336 92 0 3 chr1 15691507 15691799 -266501865 - AluSx SINE Alu -21 291 1 2293 100 0 7 chr1 15692217 15692516 -266501148 - AluSq SINE Alu -16 297 1 1972 163 5 33 chr1 15693104 15693270 -266500394 + MLT1B LTR MaLR 4 173 -217 1572 148 37 4 chr1 15693270 15693514 -266500150 + AluJb SINE Alu 56 307 -5 1972 163 5 33 chr1 15693514 15693745 -266499919 + MLT1B LTR MaLR 173 390 0 405 294 61 6 chr1 15694171 15694334 -266499330 + MIR SINE MIR 30 201 -61 313 178 6 86 chr1 15694390 15694553 -266499111 + A-rich Low_complexity Low_complexity 5 154 0 1789 222 81 21 chr1 15695440 15695909 -266497755 - MLT1D LTR MaLR -6 499 3 855 272 174 22 chr1 15696163 15696334 -266497330 + L2 LINE L2 2890 3034 -279 2341 81 0 29 chr1 15696334 15696642 -266497022 - AluSg SINE Alu -11 299 1 855 272 174 22 chr1 15696642 15696838 -266496826 + L2 LINE L2 3034 3313 0 326 283 76 28 chr1 15696876 15697021 -266496643 - MIR SINE MIR -89 173 22 2242 80 0 4 chr1 15697353 15697628 -266496036 + AluSx SINE Alu 1 274 -38 528 244 18 60 chr1 15697723 15697891 -266495773 + MIR SINE MIR 63 223 -39 429 327 204 0 chr1 15698655 15698866 -266494798 + MIR SINE MIR 2 255 -7 1822 159 27 3 chr1 15699044 15699339 -266494325 + AluJo SINE Alu 10 311 -1 204 125 0 0 chr1 15699341 15699373 -266494291 + (GGGAA)n Simple_repeat Simple_repeat 4 35 0 219 167 0 0 chr1 15699417 15699459 -266494205 + GA-rich Low_complexity Low_complexity 1 42 0 331 250 62 54 chr1 15699564 15699676 -266493988 + MIR SINE MIR 9 121 -141 548 279 56 78 chr1 15701080 15701399 -266492265 - L2 LINE L2 0 3313 3002 1645 119 0 37 chr1 15701421 15701664 -266492000 + AluJo SINE Alu 1 234 -78 32 43 0 0 chr1 15701688 15701734 -266491930 + AT_rich Low_complexity Low_complexity 1 46 0 395 286 46 38 chr1 15701735 15701988 -266491676 - L2 LINE L2 -280 2992 2731 1684 166 52 3 chr1 15702147 15702317 -266491347 - AluJo SINE Alu -8 304 113 357 24 0 0 chr1 15702317 15702359 -266491305 + (TTA)n Simple_repeat Simple_repeat 2 43 0 1684 166 52 3 chr1 15702359 15702478 -266491186 - AluJo SINE Alu -199 113 1 289 250 11 0 chr1 15702559 15702647 -266491017 - L1ME3A LINE L1 -225 5945 5857 976 176 66 35 chr1 15702789 15703016 -266490648 - MER106A DNA MER1_type 0 236 3 1072 208 29 41 chr1 15703055 15703300 -266490364 - MIR SINE MIR -18 244 3 186 237 66 53 chr1 15703236 15703312 -266490352 + MIR SINE MIR 23 99 -109 * 336 262 223 19 chr1 15703626 15703832 -266489832 - L1ME3A LINE L1 -315 5806 5559 212 281 49 24 chr1 15704403 15704485 -266489179 + (CATG)n Simple_repeat Simple_repeat 1 84 0 342 277 0 12 chr1 15704762 15704845 -266488819 + L2 LINE L2 3231 3312 -1 2027 108 0 42 chr1 15705444 15705732 -266487932 - AluSc SINE Alu -19 290 15 217 147 0 0 chr1 15705736 15705770 -266487894 - L2 LINE L2 -14 3258 3225 622 48 0 114 chr1 15707288 15707340 -266486324 + L1PB2 LINE L1 5788 5824 -327 2301 105 0 16 chr1 15707340 15707653 -266486011 + AluSx SINE Alu 1 308 -4 622 48 0 114 chr1 15707653 15707705 -266485959 + L1PB2 LINE L1 5824 5880 -271 234 299 234 19 chr1 15707897 15708222 -266485442 + L1MC/D LINE L1 5255 5649 -2159 996 145 16 21 chr1 15708380 15708573 -266485091 + L1M1 LINE L1 5508 5699 -603 514 174 0 0 chr1 15708576 15708662 -266485002 + MER66A LTR ERV1 154 239 -239 337 174 122 71 chr1 15708738 15708766 -266484898 - L1ME4a LINE L1 -4 6117 6092 1714 193 129 50 chr1 15708766 15709248 -266484416 - MLT2B1 LTR ERVL 0 520 1 337 174 122 71 chr1 15709248 15709317 -266484347 - L1ME4a LINE L1 -29 6092 6015 269 290 109 13 chr1 15709737 15709885 -266483779 + MIR SINE MIR 3 157 -63 1481 180 58 98 chr1 15709917 15710411 -266483253 + MER66A LTR ERV1 97 473 -5 316 312 18 9 chr1 15710422 15710531 -266483133 + MIR SINE MIR 153 262 0 553 269 143 27 chr1 15711874 15712097 -266481567 - MIR SINE MIR 0 262 14 1488 220 122 28 chr1 15713055 15713514 -266480150 + MLT1D LTR MaLR 4 505 0 272 173 39 0 chr1 15713947 15713999 -266479665 + GA-rich Low_complexity Low_complexity 2 55 0 663 118 13 39 chr1 15714009 15714162 -266479502 + (GGGAA)n Simple_repeat Simple_repeat 4 152 0 2140 120 3 23 chr1 15714936 15715245 -266478419 - AluSq SINE Alu -10 303 1 367 233 97 19 chr1 15715481 15715584 -266478080 - L2 LINE L2 0 3313 3203 1950 142 25 0 chr1 15716368 15716650 -266477014 + AluSx SINE Alu 1 289 -23 585 161 0 28 chr1 15716650 15716793 -266476871 + G-rich Low_complexity Low_complexity 2 140 0 449 241 170 54 chr1 15717528 15717822 -266475842 - L2 LINE L2 -27 3286 2959 237 204 0 0 chr1 15717822 15717866 -266475798 + MER103 DNA DNA 77 120 -46 246 305 42 0 chr1 15717967 15718062 -266475602 - MIR3 SINE MIR -44 164 66 870 148 164 5 chr1 15718953 15719142 -266474522 + MER20 DNA MER1_type 1 219 0 2152 136 0 7 chr1 15719699 15720008 -266473656 - AluSx SINE Alu -2 310 4 2506 66 0 10 chr1 15720404 15720709 -266472955 + AluY SINE Alu 1 302 -9 2131 119 34 0 chr1 15720976 15721271 -266472393 + AluSx SINE Alu 1 305 -7 801 154 39 133 chr1 15721658 15721892 -266471772 - MER20 DNA MER1_type -2 217 6 659 223 52 85 chr1 15722247 15722497 -266471167 + L1MC5 LINE L1 6855 7085 -899 1975 166 3 0 chr1 15722497 15722798 -266470866 + AluJb SINE Alu 1 302 -10 659 223 52 85 chr1 15722798 15722960 -266470704 + L1MC5 LINE L1 7085 7251 -733 2144 140 0 0 chr1 15722960 15723260 -266470404 + AluSx SINE Alu 1 300 -12 2674 147 9 0 chr1 15723268 15723696 -266469968 + L1MB2 LINE L1 5738 6169 -2 2053 159 0 0 chr1 15723706 15724014 -266469650 + AluSx SINE Alu 3 310 -2 936 277 88 44 chr1 15724146 15724759 -266468905 + L1MC5 LINE L1 7260 7899 -62 3015 135 29 38 chr1 15724918 15725054 -266468610 - L1PA16 LINE L1 -1 6165 6029 2441 93 0 3 chr1 15725054 15725365 -266468299 - AluY SINE Alu -1 310 1 3015 135 29 38 chr1 15725365 15725776 -266467888 - L1PA16 LINE L1 -137 6029 5623 4384 171 71 23 chr1 15726147 15726658 -266467006 + L1PA16 LINE L1 461 946 -5203 183 42 0 0 chr1 15726658 15726682 -266466982 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 4384 171 71 23 chr1 15726682 15727310 -266466354 + L1PA16 LINE L1 942 6139 -6 2311 100 10 0 chr1 15727310 15727610 -266466054 - AluSx SINE Alu -9 303 1 305 275 14 49 chr1 15727795 15727937 -266465727 - Charlie8 DNA MER1_type -2162 255 119 999 268 32 59 chr1 15727989 15728518 -266465146 + MLT1K LTR MaLR 5 551 -37 2725 99 8 0 chr1 15728519 15728891 -266464773 + THE1C LTR MaLR 1 375 0 247 368 11 28 chr1 15729024 15729206 -266464458 + L2 LINE L2 2885 3063 -209 2273 116 7 0 chr1 15729678 15729979 -266463685 + AluSg SINE Alu 1 303 -7 1814 167 3 3 chr1 15730634 15730916 -266462748 - AluJo SINE Alu -30 282 1 317 314 68 25 chr1 15730925 15731014 -266462650 - L2 LINE L2 0 3313 3216 2351 115 0 3 chr1 15731014 15731326 -266462338 + AluSx SINE Alu 1 311 -1 317 314 68 25 chr1 15731326 15731354 -266462310 - L2 LINE L2 -97 3216 3191 218 293 24 24 chr1 15731338 15731420 -266462244 + MER5A DNA MER1_type 62 143 -46 * 677 280 11 0 chr1 15731507 15731689 -266461975 + L1ME3A LINE L1 5508 5691 -479 1842 180 58 116 chr1 15731706 15732056 -266461608 + MLT1E LTR MaLR 44 413 -180 1860 169 10 16 chr1 15732056 15732370 -266461294 + AluJo SINE Alu 1 312 0 1842 180 58 116 chr1 15732370 15732386 -266461278 + MLT1E LTR MaLR 413 428 -165 2437 97 0 0 chr1 15732386 15732694 -266460970 + AluSg SINE Alu 1 308 -2 1842 180 58 116 chr1 15732694 15732910 -266460754 + MLT1E LTR MaLR 428 593 0 1187 188 18 98 chr1 15732910 15733082 -266460582 + L1ME3A LINE L1 5794 5929 -241 1755 142 36 4 chr1 15733082 15733395 -266460269 + AluSq SINE Alu 1 322 0 1187 188 18 98 chr1 15733395 15733557 -266460107 + L1ME3A LINE L1 5929 6102 -68 2443 77 0 0 chr1 15733662 15733962 -266459702 + AluSg SINE Alu 1 300 -10 438 310 16 12 chr1 15733968 15734113 -266459551 + MIR SINE MIR 20 162 -46 433 266 93 7 chr1 15734537 15734676 -266458988 - MIR SINE MIR 0 262 112 246 221 91 26 chr1 15735596 15735673 -266457991 + MIR SINE MIR 48 129 -133 532 164 0 113 chr1 15736375 15736534 -266457130 - L2 LINE L2 -43 3270 3130 2739 135 26 2 chr1 15736535 15736957 -266456707 - MSTB1 LTR MaLR 0 432 1 335 249 99 24 chr1 15736992 15737137 -266456527 - L1 LINE L1 -2944 3202 3048 343 267 60 9 chr1 15737157 15737273 -266456391 - L2 LINE L2 -276 3037 2916 404 289 20 47 chr1 15737448 15737597 -266456067 + MER5A DNA MER1_type 19 163 -26 1946 130 167 34 chr1 15737671 15738049 -266455615 - MSTA LTR MaLR 0 428 1 315 284 23 0 chr1 15738705 15738807 -266454857 + MIR SINE MIR 42 146 -62 296 198 86 37 chr1 15739882 15739963 -266453701 - L2 LINE L2 -1 3271 3187 1962 238 42 26 chr1 15739963 15740293 -266453371 - LTR40a LTR ERVL 0 519 177 2216 113 0 19 chr1 15740293 15740602 -266453062 - AluSx SINE Alu -9 303 1 1962 238 42 26 chr1 15740602 15740772 -266452892 - LTR40a LTR ERVL -342 177 11 635 218 78 0 chr1 15741624 15741766 -266451898 + MIR SINE MIR 103 255 -7 324 269 58 58 chr1 15742019 15742227 -266451437 + L1MC4 LINE L1 7834 8041 -1 903 153 28 0 chr1 15742408 15742552 -266451112 + FRAM SINE Alu 3 150 -26 593 192 177 23 chr1 15742651 15742720 -266450944 - MIR SINE MIR -19 243 186 1943 142 59 0 chr1 15742720 15743008 -266450656 + AluJb SINE Alu 1 305 -7 593 192 177 23 chr1 15743008 15743097 -266450567 - MIR SINE MIR -76 186 60 2210 202 68 7 chr1 15743845 15744300 -266449364 - MER66B LTR ERV1 -3 483 1 531 203 42 14 chr1 15744708 15744851 -266448813 - L1MD2 LINE L1 -10 6349 6203 369 0 0 0 chr1 15744857 15744898 -266448766 + (TG)n Simple_repeat Simple_repeat 2 42 0 2070 260 35 27 chr1 15744983 15745715 -266447949 - L1M4 LINE L1 -1455 4691 3954 603 283 156 5 chr1 15745967 15746179 -266447485 + MIR SINE MIR 18 261 -1 319 266 39 52 chr1 15747010 15747164 -266446500 - L1ME4a LINE L1 -6 6115 5964 489 266 179 24 chr1 15747444 15747696 -266445968 - L2 LINE L2 -353 2961 2671 198 278 28 42 chr1 15747954 15748026 -266445638 - MER5A DNA MER1_type -58 131 61 2373 89 23 0 chr1 15748079 15748381 -266445283 + AluSx SINE Alu 1 309 -3 329 325 175 21 chr1 15748796 15749082 -266444582 - L1ME4a LINE L1 -2081 5727 5398 3414 153 9 102 chr1 15749469 15749563 -266444101 - L1MB3 LINE L1 -17 6166 6065 1955 140 0 14 chr1 15749563 15749849 -266443815 - AluSx SINE Alu -30 282 1 3414 153 9 102 chr1 15749849 15750292 -266443372 - L1MB3 LINE L1 -118 6065 5724 2127 92 0 10 chr1 15750292 15750587 -266443077 - AluSx SINE Alu -12 300 9 3414 153 9 102 chr1 15750587 15750844 -266442820 - L1MB3 LINE L1 -459 5724 5445 531 238 16 88 chr1 15750970 15751163 -266442501 - MIR SINE MIR -44 218 40 373 260 179 27 chr1 15751863 15752086 -266441578 + MIR SINE MIR 5 261 -1 2509 236 23 18 chr1 15752099 15752672 -266440992 - MLT1E2 LTR MaLR -50 576 1 820 227 29 19 chr1 15752823 15753030 -266440634 - MIR SINE MIR -15 247 39 826 190 0 0 chr1 15753576 15753718 -266439946 + FAM SINE Alu 18 159 -26 204 40 0 0 chr1 15753721 15753746 -266439918 + (CA)n Simple_repeat Simple_repeat 1 25 0 412 263 46 26 chr1 15753807 15753959 -266439705 - MIR SINE MIR -88 174 20 727 273 20 20 chr1 15753963 15754161 -266439503 - MIR SINE MIR -1 261 64 735 132 9 0 chr1 15754161 15754267 -266439397 - FLAM_C SINE Alu -25 118 12 7517 182 21 23 chr1 15754275 15755218 -266438446 - L1MB2 LINE L1 -274 5897 4954 2436 74 0 0 chr1 15755218 15755528 -266438136 - AluY SINE Alu -1 310 1 7517 182 21 23 chr1 15755528 15756248 -266437416 - L1MB2 LINE L1 -1217 4954 4237 279 79 0 0 chr1 15756248 15756286 -266437378 + (TG)n Simple_repeat Simple_repeat 1 38 0 7517 182 21 23 chr1 15756286 15756886 -266436778 - L1MB2 LINE L1 -1934 4237 3637 465 329 13 0 chr1 15756886 15757038 -266436626 + MIR SINE MIR 103 256 -6 2305 90 3 0 chr1 15757397 15757697 -266435967 + AluSx SINE Alu 1 301 -11 1612 189 17 0 chr1 15757810 15758112 -266435552 - AluJo SINE Alu -5 307 1 3209 144 43 36 chr1 15758112 15758743 -266434921 - L1MC2 LINE L1 -15 6329 5695 797 136 53 0 chr1 15758745 15758914 -266434750 + L1MC/D LINE L1 5259 5436 -908 2209 251 11 5 chr1 15758923 15759480 -266434184 - L1M4 LINE L1 -2258 3888 3329 383 157 52 29 chr1 15759498 15759670 -266433994 + (TA)n Simple_repeat Simple_repeat 2 177 0 7929 18 0 0 chr1 15759704 15760667 -266432997 - L1PA3 LINE L1 -3 6152 5191 3837 229 25 12 chr1 15760703 15761623 -266432041 - L1M4 LINE L1 -2817 3329 2393 2035 115 20 3 chr1 15761623 15761918 -266431746 - AluSx SINE Alu -12 300 1 3837 229 25 12 chr1 15761918 15761999 -266431665 - L1M4 LINE L1 -3753 2393 2315 523 241 154 18 chr1 15762045 15762265 -266431399 + MIR SINE MIR 13 262 0 21 36 0 0 chr1 15762277 15762305 -266431359 + AT_rich Low_complexity Low_complexity 1 28 0 1851 110 62 0 chr1 15762467 15762580 -266431084 + AluSg SINE Alu 1 106 -204 2311 72 0 0 chr1 15762580 15762871 -266430793 + AluY SINE Alu 16 306 -5 1851 110 62 0 chr1 15762871 15763030 -266430634 + AluSg SINE Alu 106 290 -20 300 247 72 41 chr1 15763317 15763548 -266430116 + HAL1b LINE L1 1197 1312 -36 236 75 0 25 chr1 15763656 15763696 -266429968 + (TAAAAA)n Simple_repeat Simple_repeat 3 41 0 477 190 40 10 chr1 15763808 15763934 -266429730 + MIR SINE MIR 32 165 -43 353 236 32 32 chr1 15764906 15765029 -266428635 + L1MC/D LINE L1 5687 5809 -1999 630 238 6 55 chr1 15765029 15765210 -266428454 - L1MA10 LINE L1 0 6334 6163 596 219 0 58 chr1 15765221 15765376 -266428288 - L1MB7 LINE L1 -10 6174 6029 2542 185 12 18 chr1 15765421 15765923 -266427741 - L1MB3 LINE L1 -2 6181 5683 2063 97 3 17 chr1 15766033 15766332 -266427332 + AluSx SINE Alu 1 295 -17 636 223 40 7 chr1 15766419 15766567 -266427097 - MIR SINE MIR -39 223 71 2436 48 0 0 chr1 15766676 15766969 -266426695 - AluY SINE Alu -18 293 1 559 301 18 0 chr1 15767810 15767976 -266425688 + MIR SINE MIR 64 232 -30 1825 126 35 3 chr1 15768226 15768512 -266425152 + AluSx SINE Alu 1 295 -17 309 221 91 0 chr1 15768534 15768611 -266425053 - MER91C DNA MER1_type -35 105 22 314 228 120 43 chr1 15769191 15769283 -266424381 - MIR SINE MIR -81 127 29 590 242 107 70 chr1 15769563 15769782 -266423882 - MIR SINE MIR -8 254 24 931 198 127 0 chr1 15769782 15769979 -266423685 + MER58A DNA MER1_type 1 222 -2 590 242 107 70 chr1 15769979 15770003 -266423661 - MIR SINE MIR -238 24 2 2092 95 0 0 chr1 15770183 15770457 -266423207 - AluSx SINE Alu -14 298 25 747 143 20 122 chr1 15770972 15771168 -266422496 - MLT1K LTR MaLR -9 579 404 726 71 9 9 chr1 15771147 15771260 -266422404 + LTR9B LTR ERV1 446 558 -86 * 180 0 0 0 chr1 15771262 15771282 -266422382 + (A)n Simple_repeat Simple_repeat 1 20 0 664 251 89 0 chr1 15771354 15771533 -266422131 - MLT1K LTR MaLR -277 311 117 2081 137 0 3 chr1 15773185 15773492 -266420172 + AluSx SINE Alu 1 306 -6 1250 205 37 13 chr1 15773527 15773859 -266419805 - L1MD3 LINE L1 -661 7124 6777 3658 192 36 52 chr1 15774001 15774562 -266419102 + MER63C DNA MER1_type 68 611 -449 2885 186 0 4 chr1 15774562 15775050 -266418614 - MER66B LTR ERV1 0 486 1 3658 192 36 52 chr1 15775050 15775365 -266418299 + MER63C DNA MER1_type 611 930 0 435 305 104 18 chr1 15775650 15775861 -266417803 + MIR SINE MIR 20 233 -29 2431 54 3 0 chr1 15775906 15776204 -266417460 + AluY SINE Alu 1 299 -12 259 58 0 77 chr1 15776612 15776664 -266417000 + (GAAA)n Simple_repeat Simple_repeat 4 51 0 2113 92 0 3 chr1 15776958 15777271 -266416393 + AluSq SINE Alu 2 313 0 2570 150 24 0 chr1 15777470 15777923 -266415741 + L1MB2 LINE L1 5708 6171 0 1823 165 3 0 chr1 15777928 15778231 -266415433 + AluJb SINE Alu 1 304 -8 268 164 18 18 chr1 15778331 15778386 -266415278 - MLT1K LTR MaLR -342 246 192 2548 97 8 21 chr1 15779015 15779395 -266414269 - THE1C LTR MaLR 0 375 1 258 256 136 50 chr1 15779792 15779977 -266413687 + MIR SINE MIR 19 223 -39 189 253 27 40 chr1 15780135 15780210 -266413454 - L2 LINE L2 -40 3232 3159 351 235 53 83 chr1 15780315 15780447 -266413217 - L2 LINE L2 -9 3304 3177 261 300 22 0 chr1 15780510 15780600 -266413064 + MIR SINE MIR 164 255 -7 213 273 0 45 chr1 15780617 15780683 -266412981 - L2 LINE L2 -184 3088 3026 1718 165 3 13 chr1 15780686 15780995 -266412669 - AluJb SINE Alu -6 306 1 400 223 57 57 chr1 15781443 15781618 -266412046 - L1ME4a LINE L1 0 6121 5947 182 183 67 100 chr1 15781745 15781805 -266411859 - MIR SINE MIR -85 177 120 2121 66 3 72 chr1 15782402 15782721 -266410943 - AluY SINE Alu -14 297 1 1636 110 118 15 chr1 15782817 15783089 -266410575 - AluSg1 SINE Alu -9 300 1 1824 209 47 23 chr1 15783278 15783725 -266409939 - MLT1F1 LTR MaLR 0 567 107 574 130 33 0 chr1 15783738 15783830 -266409834 + MLT1B LTR MaLR 1 95 -295 1216 134 0 0 chr1 15783843 15784029 -266409635 - AluSg/x SINE Alu 0 312 127 1951 73 0 8 chr1 15784033 15784293 -266409371 - AluY SINE Alu -4 307 50 1426 123 40 4 chr1 15784293 15784520 -266409144 + MLT1B LTR MaLR 94 328 -62 716 155 0 39 chr1 15784520 15784649 -266409015 + FLAM_C SINE Alu 6 129 -14 418 155 14 0 chr1 15784667 15784738 -266408926 + MLT1B LTR MaLR 319 390 0 385 253 35 0 chr1 15784738 15784825 -266408839 - MLT1F1 LTR MaLR -451 91 2 1413 205 41 62 chr1 15784826 15785145 -266408519 - L1ME2 LINE L1 -29 6135 5827 2233 104 0 3 chr1 15785145 15785454 -266408210 + AluSg SINE Alu 1 308 -2 1413 205 41 62 chr1 15785454 15785556 -266408108 - L1ME2 LINE L1 -337 5827 5724 1117 161 14 67 chr1 15786039 15786111 -266407553 - MER20 DNA MER1_type 0 219 145 2093 104 3 0 chr1 15786111 15786400 -266407264 - AluSx SINE Alu -22 290 1 1117 161 14 67 chr1 15786400 15786550 -266407114 - MER20 DNA MER1_type -74 145 9 660 244 55 12 chr1 15786815 15786979 -266406685 + MIR SINE MIR 9 179 -83 1688 186 4 0 chr1 15787034 15787314 -266406350 + AluJo SINE Alu 1 281 -31 186 167 0 0 chr1 15787340 15787376 -266406288 + (CATATA)n Simple_repeat Simple_repeat 6 41 0 413 200 0 0 chr1 15787376 15787441 -266406223 + MER2 DNA MER2_type 281 345 0 823 253 65 0 chr1 15787473 15787659 -266406005 - MER58A DNA MER1_type -26 198 1 364 324 0 0 chr1 15787673 15787775 -266405889 - MIR SINE MIR -71 191 90 2497 57 0 0 chr1 15787959 15788260 -266405404 - AluY SINE Alu -10 301 1 762 270 52 9 chr1 15788673 15788884 -266404780 - MIR SINE MIR -6 256 37 577 239 150 14 chr1 15789286 15789499 -266404165 - MLT1H LTR MaLR -5 550 309 253 138 0 52 chr1 15789588 15789646 -266404018 - L1PB1 LINE L1 0 6151 6097 * 3626 135 0 11 chr1 15789642 15790196 -266403468 + L1PB1 LINE L1 5549 6096 -55 787 240 75 37 chr1 15790212 15790466 -266403198 - MLT1H LTR MaLR -244 305 1 378 240 47 113 chr1 15790540 15790595 -266403069 - MLT1K LTR MaLR -7 581 524 1232 196 6 91 chr1 15790595 15790937 -266402727 + AluSq SINE Alu 1 313 0 378 240 47 113 chr1 15790937 15791031 -266402633 - MLT1K LTR MaLR -64 524 442 332 224 30 0 chr1 15791410 15791477 -266402187 + L2 LINE L2 3200 3268 -4 2258 76 7 0 chr1 15792549 15792837 -266400827 - AluSq SINE Alu -23 290 1 392 215 118 118 chr1 15793329 15793453 -266400211 - MIR SINE MIR -7 255 129 1983 114 45 0 chr1 15793453 15793742 -266399922 + AluSx SINE Alu 1 302 -10 392 215 118 118 chr1 15793742 15793854 -266399810 - MIR SINE MIR -132 130 19 2203 66 24 0 chr1 15794151 15794438 -266399226 + AluY SINE Alu 1 294 -17 197 260 233 0 chr1 15794658 15794731 -266398933 + L2 LINE L2 3140 3229 -43 261 83 0 0 chr1 15794731 15794767 -266398897 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 426 324 14 14 chr1 15794767 15794912 -266398752 - L2 LINE L2 -16 3297 3153 2293 103 3 0 chr1 15795275 15795586 -266398078 + AluSx SINE Alu 1 312 0 348 245 154 37 chr1 15796887 15797075 -266396589 - MIR SINE MIR -29 233 24 398 314 8 57 chr1 15797127 15797251 -266396413 + MIR SINE MIR 30 147 -61 2759 68 11 0 chr1 15797252 15797603 -266396061 + THE1A LTR MaLR 1 355 0 12400 77 10 1 chr1 15797603 15799169 -266394495 + THE1A-int LTR MaLR 1 1580 0 2237 72 97 27 chr1 15799169 15799436 -266394228 + THE1A LTR MaLR 1 297 -58 2440 66 0 0 chr1 15799436 15799737 -266393927 - AluY SINE Alu -10 301 1 2237 72 97 27 chr1 15799737 15799800 -266393864 + THE1A LTR MaLR 297 354 -1 458 247 48 42 chr1 15800470 15800636 -266393028 - MER117 DNA MER1_type -27 170 4 200 306 0 0 chr1 15800636 15800685 -266392979 + L2 LINE L2 3251 3299 -14 225 0 0 0 chr1 15800990 15801015 -266392649 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 460 271 137 45 chr1 15801017 15801268 -266392396 - L2 LINE L2 -17 3296 3069 1479 113 17 22 chr1 15801268 15801499 -266392165 - MER30 DNA MER1_type 0 230 1 460 271 137 45 chr1 15801499 15801783 -266391881 - L2 LINE L2 -244 3069 2718 573 219 159 0 chr1 15802279 15802430 -266391234 + MER5A DNA MER1_type 13 187 -2 473 263 58 26 chr1 15802430 15802586 -266391078 - MLT1I LTR MaLR -14 395 235 1684 266 98 14 chr1 15802625 15802671 -266390993 + L1MEc LINE L1 54 95 -6301 188 35 35 0 chr1 15802671 15802700 -266390964 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 1684 266 98 14 chr1 15802700 15803285 -266390379 + L1MEc LINE L1 95 738 -5658 2170 198 114 8 chr1 15803482 15803972 -266389692 - MLT1F LTR MaLR 0 542 1 216 238 61 122 chr1 15803996 15804086 -266389578 - MIR SINE MIR -89 173 94 2043 151 0 3 chr1 15804086 15804378 -266389286 + AluJb SINE Alu 1 291 -21 216 238 61 122 chr1 15804378 15804434 -266389230 - MIR SINE MIR -168 94 36 2056 91 44 7 chr1 15805495 15805810 -266387854 + AluSq SINE Alu 1 325 0 425 220 22 0 chr1 15806306 15806627 -266387037 + (TG)n Simple_repeat Simple_repeat 1 328 0 300 275 118 38 chr1 15806850 15807061 -266386603 - L1ME4a LINE L1 0 6121 5894 417 300 56 38 chr1 15807114 15807188 -266386476 - L1ME4a LINE L1 -302 5819 5748 2572 72 0 3 chr1 15807188 15807493 -266386171 - AluY SINE Alu -7 304 1 417 300 56 38 chr1 15807493 15807685 -266385979 - L1ME4a LINE L1 -373 5748 5548 272 205 34 34 chr1 15808561 15808619 -266385045 + MER113 DNA MER1_type? 117 174 -347 2055 123 0 17 chr1 15808619 15808911 -266384753 + AluSx SINE Alu 9 295 -17 272 205 34 34 chr1 15808911 15808969 -266384695 + MER113 DNA MER1_type? 173 233 -288 313 287 67 27 chr1 15809719 15809869 -266383795 - MIR SINE MIR -105 157 2 794 196 117 6 chr1 15810008 15810068 -266383596 - MER3 DNA MER1_type 0 209 157 2362 93 0 23 chr1 15810068 15810378 -266383286 + AluSx SINE Alu 10 312 0 794 196 117 6 chr1 15810378 15810496 -266383168 - MER3 DNA MER1_type -52 157 11 821 132 0 44 chr1 15810701 15810837 -266382827 - FLAM_C SINE Alu -3 130 1 816 132 25 0 chr1 15811188 15811309 -266382355 + FLAM_C SINE Alu 3 126 -17 2205 261 52 25 chr1 15811696 15812526 -266381138 - L1MEc LINE L1 -3135 3405 2554 520 303 57 72 chr1 15812527 15812632 -266381032 - L1MEc LINE L1 -4144 2577 2472 2240 125 3 0 chr1 15812632 15812937 -266380727 - AluSc SINE Alu -1 308 3 520 303 57 72 chr1 15812937 15813294 -266380370 - L1MEc LINE L1 -4249 2472 2199 233 293 68 15 chr1 15813305 15813438 -266380226 - L1MEc LINE L1 -4448 2092 1953 210 308 0 0 chr1 15813440 15813547 -266380117 + (TG)n Simple_repeat Simple_repeat 1 107 0 584 275 31 37 chr1 15813547 15813896 -266379768 - L1MEc LINE L1 -4732 1989 1643 24 0 0 0 chr1 15814084 15814108 -266379556 + AT_rich Low_complexity Low_complexity 1 24 0 416 206 37 37 chr1 15814128 15814235 -266379429 - MIR SINE MIR -123 139 33 952 179 67 0 chr1 15814246 15814425 -266379239 - MER3 DNA MER1_type -18 191 1 2667 73 3 0 chr1 15814539 15814893 -266378771 - THE1A LTR MaLR 0 355 1 623 256 105 0 chr1 15815740 15815931 -266377733 - MIR SINE MIR -5 257 47 195 42 0 0 chr1 15817028 15817052 -266376612 + (TG)n Simple_repeat Simple_repeat 2 25 0 290 306 0 0 chr1 15818225 15818297 -266375367 - L2 LINE L2 -24 3248 3177 2439 93 3 0 chr1 15819459 15819771 -266373893 + AluSp SINE Alu 1 313 0 180 111 0 0 chr1 15819949 15819976 -266373688 + (T)n Simple_repeat Simple_repeat 1 27 0 797 244 6 11 chr1 15821552 15821732 -266371932 + MIR SINE MIR 78 256 -6 452 251 49 18 chr1 15821805 15822003 -266371661 - L1MC4a LINE L1 -321 5800 5651 391 278 163 41 chr1 15822473 15822940 -266370724 - L2 LINE L2 -503 2811 2288 220 324 14 0 chr1 15822975 15823049 -266370615 + L2 LINE L2 3239 3313 0 912 178 0 0 chr1 15823068 15823340 -266370324 + (TGGA)n Simple_repeat Simple_repeat 1 272 0 618 149 0 0 chr1 15823344 15823478 -266370186 + (GGAA)n Simple_repeat Simple_repeat 4 137 0 249 261 11 43 chr1 15823652 15823744 -266369920 - L1MC4a LINE L1 -512 5609 5521 1541 195 7 36 chr1 15824134 15824436 -266369228 + AluJo SINE Alu 2 294 -18 276 125 0 42 chr1 15825004 15825076 -266368588 + (GGA)n Simple_repeat Simple_repeat 3 71 0 192 125 0 0 chr1 15825078 15825110 -266368554 + (ATG)n Simple_repeat Simple_repeat 3 34 0 413 284 40 20 chr1 15825112 15825260 -266368404 - MIR SINE MIR -1 261 111 511 323 28 68 chr1 15825414 15825532 -266368132 - MIR SINE MIR -15 247 143 1923 153 23 0 chr1 15825532 15825833 -266367831 - AluJb SINE Alu -4 308 1 511 323 28 68 chr1 15825833 15825962 -266367702 - MIR SINE MIR -119 143 10 373 288 151 14 chr1 15826161 15826373 -266367291 + MIR SINE MIR 5 245 -17 305 288 25 0 chr1 15827300 15827380 -266366284 - L2 LINE L2 0 3272 3191 261 307 203 13 chr1 15827846 15827999 -266365665 + MIR SINE MIR 48 229 -33 251 250 13 13 chr1 15828814 15828890 -266364774 + MER91A DNA MER1_type 110 185 -11 711 181 54 42 chr1 15829214 15829380 -266364284 + MER20 DNA MER1_type 34 201 -18 245 306 59 0 chr1 15829563 15829648 -266364016 + MIR SINE MIR 57 146 -62 1853 172 107 35 chr1 15829871 15830331 -266363333 - MLT1D LTR MaLR -5 500 8 229 306 157 9 chr1 15830548 15830656 -266363008 + L2 LINE L2 3139 3262 -10 2091 149 0 13 chr1 15830719 15831028 -266362636 - AluSx SINE Alu -7 305 1 2206 106 21 0 chr1 15831545 15831828 -266361836 - AluSx SINE Alu -18 294 6 527 301 229 12 chr1 15831987 15832402 -266361262 - MLT1H LTR MaLR -13 536 32 957 170 37 108 chr1 15832439 15832610 -266361054 - MER58A DNA MER1_type -2196 224 73 2343 106 0 0 chr1 15832610 15832913 -266360751 + AluSx SINE Alu 4 306 -6 957 170 37 108 chr1 15832913 15832982 -266360682 - MER58A DNA MER1_type -2347 73 1 185 316 211 23 chr1 15832983 15833116 -266360548 - MIR3 SINE MIR -49 159 2 * 509 234 74 13 chr1 15833116 15833312 -266360352 - MIR SINE MIR -14 248 1 364 285 250 14 chr1 15834046 15834190 -266359474 - MER5A DNA MER1_type 0 189 12 347 204 114 37 chr1 15834217 15834354 -266359310 + MER5A DNA MER1_type 7 164 -25 1772 197 0 3 chr1 15834374 15834668 -266358996 - AluJo SINE Alu -19 293 1 842 157 0 15 chr1 15834668 15834802 -266358862 - AluJo SINE Alu -177 135 4 361 274 20 65 chr1 15834866 15835019 -266358645 - MER5B DNA MER1_type -32 146 1 757 193 198 0 chr1 15836139 15836326 -266357338 - MER58A DNA MER1_type 0 224 1 239 317 100 17 chr1 15836326 15836446 -266357218 + MIR SINE MIR 17 146 -116 505 336 33 5 chr1 15836456 15836670 -266356994 - MIR SINE MIR -41 221 2 278 302 114 42 chr1 15837576 15837884 -266355780 - L3 LINE CR1 -76 1501 1172 385 259 225 55 chr1 15837927 15838216 -266355448 + MER102b DNA MER1_type 1 338 -3 442 297 131 9 chr1 15838223 15838445 -266355219 - L3 LINE CR1 -466 1111 863 194 307 67 27 chr1 15838447 15838522 -266355142 + MIR SINE MIR 6 83 -179 2024 98 8 4 chr1 15839190 15839456 -266354208 - AluSx SINE Alu -45 267 1 353 319 28 7 chr1 15840459 15840600 -266353064 + MIR SINE MIR 44 187 -75 273 119 0 0 chr1 15840652 15840694 -266352970 + (TTA)n Simple_repeat Simple_repeat 1 42 0 549 268 30 18 chr1 15840917 15841081 -266352583 + MIR SINE MIR 8 173 -89 313 259 14 77 chr1 15841832 15841975 -266351689 - L2 LINE L2 0 3313 3180 345 321 71 0 chr1 15842306 15842446 -266351218 + MIR SINE MIR 48 197 -65 2270 129 0 0 chr1 15842771 15843080 -266350584 + AluSx SINE Alu 2 310 -2 212 296 123 67 chr1 15843140 15843319 -266350345 + MIR SINE MIR 13 201 -61 372 235 77 41 chr1 15843727 15843897 -266349767 - L1ME4a LINE L1 -3 6118 5943 557 317 36 18 chr1 15844728 15844952 -266348712 + MIR SINE MIR 8 235 -27 2532 90 0 0 chr1 15845130 15845442 -266348222 + AluSx SINE Alu 1 312 0 332 285 41 64 chr1 15845845 15846017 -266347647 + MER5A DNA MER1_type 7 174 -15 332 235 31 31 chr1 15846049 15846147 -266347517 + L3 LINE CR1 1060 1157 -420 2438 103 0 0 chr1 15846634 15846935 -266346729 + AluSx SINE Alu 1 301 -11 324 220 33 47 chr1 15847598 15847748 -266345916 - L1ME4a LINE L1 0 6121 5974 2149 184 85 2 chr1 15847873 15848296 -266345368 - LTR24 LTR ERV1 0 467 10 2353 104 0 0 chr1 15848297 15848595 -266345069 + AluSx SINE Alu 1 298 -14 547 297 7 0 chr1 15848766 15848911 -266344753 - L1ME4a LINE L1 -459 5662 5517 2315 86 3 13 chr1 15849051 15849355 -266344309 + AluSc SINE Alu 1 301 -8 795 293 18 4 chr1 15849460 15849685 -266343979 + L3 LINE CR1 1190 1417 -160 971 221 11 0 chr1 15850071 15850261 -266343403 - MER20 DNA MER1_type 0 219 28 2122 135 0 31 chr1 15851273 15851415 -266342249 + AluSx SINE Alu 1 146 -166 2188 62 0 0 chr1 15851415 15851671 -266341993 + AluY SINE Alu 40 295 -16 2122 135 0 31 chr1 15851671 15851846 -266341818 + AluSx SINE Alu 146 308 -4 482 229 14 14 chr1 15851948 15852088 -266341576 - L2 LINE L2 -212 3060 2921 962 212 19 0 chr1 15852946 15853158 -266340506 - MER20 DNA MER1_type 0 219 4 220 307 20 30 chr1 15853203 15853304 -266340360 - L2 LINE L2 0 3272 3173 2462 58 7 0 chr1 15853433 15853728 -266339936 + AluSc SINE Alu 1 297 -12 408 195 35 62 chr1 15854702 15854728 -266338936 + MIR SINE MIR 37 62 -146 2380 146 37 0 chr1 15854728 15855138 -266338526 - MSTC LTR MaLR -3 425 1 408 195 35 62 chr1 15855138 15855224 -266338440 + MIR SINE MIR 62 146 -62 2511 90 0 0 chr1 15856035 15856345 -266337319 + AluSx SINE Alu 1 310 -2 1551 149 87 29 chr1 15857034 15857310 -266336354 - AluJo SINE Alu 0 312 21 2452 89 3 0 chr1 15857713 15858017 -266335647 + AluSg SINE Alu 1 305 -5 242 311 78 0 chr1 15858307 15858410 -266335254 + MIR SINE MIR 64 174 -88 390 277 27 9 chr1 15858824 15858936 -266334728 + MIR SINE MIR 49 162 -100 1604 103 0 0 chr1 15858936 15859139 -266334525 + AluSx SINE Alu 16 218 -94 372 264 76 123 chr1 15859508 15859663 -266334001 + L2 LINE L2 3009 3147 -125 2238 113 0 19 chr1 15859663 15859981 -266333683 - AluSx SINE Alu 0 312 1 372 264 76 123 chr1 15859981 15860101 -266333563 + L2 LINE L2 3147 3271 -1 514 297 63 63 chr1 15860306 15860365 -266333299 + MIR SINE MIR 10 68 -194 2090 115 14 24 chr1 15860365 15860661 -266333003 + AluSq SINE Alu 1 293 -20 514 297 63 63 chr1 15860661 15860840 -266332824 + MIR SINE MIR 67 248 -14 350 283 150 6 chr1 15861468 15861648 -266332016 + MIR SINE MIR 13 218 -44 1926 154 0 7 chr1 15861670 15861984 -266331680 - AluJb SINE Alu 0 312 1 389 277 118 14 chr1 15862010 15862230 -266331434 - L1MC4a LINE L1 -1879 5929 5687 291 279 0 0 chr1 15862874 15862942 -266330722 - L2 LINE L2 0 3272 3205 601 291 48 33 chr1 15863633 15863966 -266329698 - L2 LINE L2 -18 3295 2958 310 335 43 27 chr1 15864111 15864296 -266329368 + L2 LINE L2 3091 3278 -35 212 158 0 0 chr1 15864381 15864419 -266329245 + (TATATG)n Simple_repeat Simple_repeat 4 41 0 650 290 75 4 chr1 15864501 15864756 -266328908 + L2 LINE L2 3041 3313 0 2342 75 7 10 chr1 15864936 15865229 -266328435 + AluSg SINE Alu 1 292 -18 1590 167 37 11 chr1 15865278 15865547 -266328117 + AluJo SINE Alu 1 276 -36 411 186 0 0 chr1 15865636 15865706 -266327958 - MER3 DNA MER1_type -124 85 16 2213 124 3 0 chr1 15866556 15866863 -266326801 - AluSg SINE Alu -2 308 1 262 222 28 14 chr1 15867114 15867186 -266326478 + MIR SINE MIR 63 135 -127 2408 75 0 3 chr1 15867717 15868097 -266325567 - AluY SINE Alu 0 311 1 608 237 177 19 chr1 15868228 15868443 -266325221 + MIR SINE MIR 14 262 0 1500 196 0 19 chr1 15868461 15868732 -266324932 + AluJo SINE Alu 1 266 -46 2029 138 27 7 chr1 15869263 15869561 -266324103 + AluJb SINE Alu 1 304 -8 793 239 16 82 chr1 15869581 15869729 -266323935 - MIR SINE MIR 0 262 135 1928 134 72 0 chr1 15869729 15870020 -266323644 + AluSx SINE Alu 1 312 0 793 239 16 82 chr1 15870020 15870114 -266323550 - MIR SINE MIR -127 135 36 186 43 0 0 chr1 15870455 15870478 -266323186 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 8574 43 10 0 chr1 15870725 15871684 -266321980 - LTR5 LTR ERVK 0 969 1 300 311 94 19 chr1 15871811 15871917 -266321747 - L2 LINE L2 0 3272 3159 811 200 56 37 chr1 15871927 15872142 -266321522 - MER20 DNA MER1_type 0 219 1 363 303 21 88 chr1 15874035 15874273 -266319391 + MIR SINE MIR 31 252 -10 330 315 0 0 chr1 15874274 15874366 -266319298 + (TGGA)n Simple_repeat Simple_repeat 3 94 0 431 287 64 6 chr1 15874756 15874913 -266318751 + MIR SINE MIR 23 188 -74 403 205 79 57 chr1 15875420 15875628 -266318036 - MIR SINE MIR -35 227 17 372 292 0 8 chr1 15875668 15875788 -266317876 + (TG)n Simple_repeat Simple_repeat 2 120 0 1642 163 48 24 chr1 15877211 15877500 -266316164 + AluJo SINE Alu 1 296 -16 252 237 162 64 chr1 15877720 15877949 -266315715 + MIR SINE MIR 4 261 -1 206 287 85 21 chr1 15878412 15878506 -266315158 + MIR SINE MIR 119 218 -44 206 91 61 0 chr1 15878523 15878556 -266315108 + T-rich Low_complexity Low_complexity 3 37 0 1990 124 3 77 chr1 15878558 15878896 -266314768 - AluSq SINE Alu 0 313 1 1005 110 0 7 chr1 15879174 15879310 -266314354 + AluJo SINE Alu 1 135 -177 1949 151 3 3 chr1 15879310 15879608 -266314056 + AluJb SINE Alu 1 298 -14 252 115 10 73 chr1 15879949 15880045 -266313619 + (TCCC)n Simple_repeat Simple_repeat 1 90 0 1643 174 3 11 chr1 15880889 15881176 -266312488 + AluJo SINE Alu 19 303 -9 992 122 5 41 chr1 15881458 15881654 -266312010 + MER53 DNA DNA 1 189 0 2465 82 3 0 chr1 15881771 15882075 -266311589 + AluSx SINE Alu 1 305 -7 373 278 173 16 chr1 15882080 15882271 -266311393 + MER102b DNA MER1_type 119 339 -2 373 73 0 37 chr1 15882997 15883091 -266310573 - Alu SINE Alu 0 301 239 854 103 0 0 chr1 15883093 15883200 -266310464 - AluY SINE Alu -204 107 1 2616 41 3 0 chr1 15883958 15884251 -266309413 + AluY SINE Alu 1 294 -17 308 283 9 19 chr1 15884560 15884666 -266308998 - L2 LINE L2 -2 3311 3207 257 232 217 40 chr1 15884728 15884780 -266308884 + MER106A DNA MER1_type 2 43 -193 2192 103 41 0 chr1 15884780 15885070 -266308594 - AluSx SINE Alu -10 302 1 257 232 217 40 chr1 15885070 15885123 -266308541 + MER106A DNA MER1_type 43 85 -151 339 25 0 0 chr1 15885123 15885163 -266308501 + (CA)n Simple_repeat Simple_repeat 2 41 0 257 232 217 40 chr1 15885163 15885254 -266308410 + MER106A DNA MER1_type 85 234 -2 899 216 0 5 chr1 15885315 15885500 -266308164 - AluSg/x SINE Alu -17 295 112 180 318 16 0 chr1 15885606 15885669 -266307995 - L2 LINE L2 -260 3053 2990 248 138 0 69 chr1 15886394 15886452 -266307212 - MIR SINE MIR -91 171 118 2346 68 20 3 chr1 15886739 15887032 -266306632 + AluY SINE Alu 1 298 -13 1224 68 182 0 chr1 15887419 15887611 -266306053 - MER30 DNA MER1_type 0 230 4 1979 142 0 37 chr1 15887735 15888059 -266305605 + AluJb SINE Alu 1 312 0 314 318 34 34 chr1 15888079 15888227 -266305437 + L1ME4a LINE L1 5974 6121 0 2167 141 0 3 chr1 15888234 15888547 -266305117 + AluSx SINE Alu 1 312 0 2560 60 0 22 chr1 15888610 15888927 -266304737 + AluY SINE Alu 1 310 -1 2066 140 14 0 chr1 15889558 15889850 -266303814 + AluSg SINE Alu 1 296 -14 1074 117 0 0 chr1 15889857 15890002 -266303662 + AluSg/x SINE Alu 156 300 -12 573 288 117 0 chr1 15890052 15890257 -266303407 - MIR SINE MIR 0 262 34 2360 94 0 3 chr1 15890531 15890829 -266302835 - AluSq SINE Alu -16 297 1 26 0 0 0 chr1 15890855 15890881 -266302783 + AT_rich Low_complexity Low_complexity 1 26 0 1975 166 3 0 chr1 15890992 15891287 -266302377 + AluJo SINE Alu 1 296 -16 507 288 40 57 chr1 15891603 15891998 -266301666 + MLT1J LTR MaLR 37 461 -50 546 259 80 71 chr1 15892017 15892208 -266301456 - MLT1H LTR MaLR -16 533 336 1054 200 29 5 chr1 15892208 15892418 -266301246 + MER20 DNA MER1_type 2 216 -3 546 259 80 71 chr1 15892418 15892551 -266301113 - MLT1H LTR MaLR -213 336 206 401 263 0 51 chr1 15892808 15892945 -266300719 - LTR67 LTR ERVL 0 557 428 196 263 0 18 chr1 15893855 15893912 -266299752 - L2 LINE L2 -1 3271 3216 788 21 0 0 chr1 15894045 15894142 -266299522 - L1PA4 LINE L1 -3 6152 6056 357 332 132 5 chr1 15894289 15894479 -266299185 - MIR SINE MIR 0 262 49 680 182 94 61 chr1 15894555 15894736 -266298928 - MER58A DNA MER1_type -8 216 30 3354 167 56 61 chr1 15894858 15895243 -266298421 - MER21A LTR ERV1 -28 903 518 2418 89 0 7 chr1 15895243 15895547 -266298117 + AluSq SINE Alu 1 302 -11 3354 167 56 61 chr1 15895547 15896003 -266297661 - MER21A LTR ERV1 -413 518 23 1692 188 20 7 chr1 15896003 15896301 -266297363 + AluJo SINE Alu 1 302 -10 3354 167 56 61 chr1 15896301 15896324 -266297340 - MER21A LTR ERV1 -908 23 1 1997 132 10 16 chr1 15896522 15896826 -266296838 + AluJb SINE Alu 6 307 -5 332 303 17 17 chr1 15897331 15897450 -266296214 - L2 LINE L2 0 3313 3195 2472 73 0 3 chr1 15898065 15898366 -266295298 + AluY SINE Alu 1 300 -11 509 241 49 12 chr1 15900571 15900733 -266292931 - MER5A DNA MER1_type 0 189 22 38 22 0 0 chr1 15901509 15901554 -266292110 + GC_rich Low_complexity Low_complexity 1 45 0 26 30 0 0 chr1 15901993 15902026 -266291638 + GC_rich Low_complexity Low_complexity 1 33 0 401 229 21 10 chr1 15904101 15904197 -266289467 - MIR SINE MIR -146 116 20 292 283 10 20 chr1 15905047 15905146 -266288518 + MIR3 SINE MIR 99 196 -12 324 309 32 56 chr1 15905331 15905457 -266288207 - MIR3 SINE MIR -27 181 59 274 244 337 12 chr1 15906072 15906244 -266287420 + MIR SINE MIR 23 250 -12 336 252 165 0 chr1 15906610 15906725 -266286939 + MIR SINE MIR 56 189 -73 476 199 58 79 chr1 15907149 15907186 -266286478 - MIR SINE MIR -62 146 110 2268 116 0 3 chr1 15907186 15907497 -266286167 - AluSx SINE Alu -2 310 1 476 199 58 79 chr1 15907497 15907613 -266286051 - MIR SINE MIR -98 110 41 501 245 43 22 chr1 15908288 15908427 -266285237 - MIR SINE MIR -109 153 12 405 274 150 26 chr1 15908429 15908523 -266285141 + MER5A DNA MER1_type 17 98 -91 1913 149 3 3 chr1 15908523 15908818 -266284846 - AluJo SINE Alu -17 295 1 405 274 150 26 chr1 15908818 15908876 -266284788 + MER5A DNA MER1_type 98 188 -1 225 108 0 0 chr1 15909254 15909291 -266284373 + (TC)n Simple_repeat Simple_repeat 1 37 0 188 308 51 26 chr1 15909517 15909634 -266284030 + MIR3 SINE MIR 5 124 -84 2436 96 0 0 chr1 15909685 15909997 -266283667 - AluSx SINE Alu 0 312 1 2632 36 0 0 chr1 15910007 15910312 -266283352 - AluY SINE Alu -6 305 1 355 298 164 35 chr1 15910314 15910485 -266283179 + L3 LINE CR1 1377 1569 -8 554 288 156 0 chr1 15910507 15910719 -266282945 + MIR SINE MIR 4 248 -14 320 238 62 33 chr1 15911249 15911371 -266282293 + MIR3 SINE MIR 35 165 -43 1725 159 33 10 chr1 15912040 15912216 -266281448 - AluJb SINE Alu -3 309 139 234 0 0 0 chr1 15912216 15912242 -266281422 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2137 117 0 0 chr1 15912242 15912525 -266281139 - AluSg SINE Alu -27 283 1 1725 159 33 10 chr1 15912525 15912649 -266281015 - AluJb SINE Alu -172 140 1 742 272 60 4 chr1 15912710 15912945 -266280719 - MIR SINE MIR -1 261 14 275 330 28 18 chr1 15913631 15913740 -266279924 - MIR SINE MIR -2 260 151 704 181 44 106 chr1 15913744 15913793 -266279871 - MER20 DNA MER1_type 0 219 169 2251 108 0 0 chr1 15913793 15914098 -266279566 - AluSg SINE Alu -5 305 1 704 181 44 106 chr1 15914098 15914274 -266279390 - MER20 DNA MER1_type -50 169 8 2448 69 0 0 chr1 15914287 15914591 -266279073 + AluY SINE Alu 1 304 -7 316 237 110 18 chr1 15915189 15915330 -266278334 + MIR SINE MIR 7 151 -62 1890 132 47 7 chr1 15915615 15915911 -266277753 + AluJo SINE Alu 1 308 -4 747 212 196 5 chr1 15916612 15916796 -266276868 + MER20 DNA MER1_type 1 219 0 2224 105 0 0 chr1 15916950 15917244 -266276420 + AluSx SINE Alu 1 294 -18 288 341 8 23 chr1 15917286 15917415 -266276249 + L3 LINE CR1 1343 1469 -108 209 310 163 31 chr1 15917956 15918085 -266275579 - L2 LINE L2 -1 3312 3167 318 271 45 45 chr1 15919726 15919851 -266273813 - MIR SINE MIR -69 139 63 2238 106 0 13 chr1 15919918 15920229 -266273435 + AluSx SINE Alu 1 307 -5 480 318 32 21 chr1 15922186 15922297 -266271367 - MIR SINE MIR -36 226 110 2246 84 0 0 chr1 15922297 15922605 -266271059 + AluSx SINE Alu 1 308 0 480 318 32 21 chr1 15922605 15922681 -266270983 - MIR SINE MIR -152 110 36 241 304 29 0 chr1 15922886 15922955 -266270709 + MIR SINE MIR 83 153 -55 854 138 0 0 chr1 15923247 15923370 -266270294 + FLAM_C SINE Alu 5 127 -16 1608 139 94 8 chr1 15923622 15923914 -266269750 + AluJo SINE Alu 1 315 0 197 250 78 0 chr1 15924652 15924716 -266268948 + L2 LINE L2 3187 3255 -17 249 108 0 0 chr1 15924721 15924758 -266268906 + (TGAA)n Simple_repeat Simple_repeat 2 38 0 2078 138 0 0 chr1 15924856 15925152 -266268512 + AluSx SINE Alu 1 296 -16 513 192 62 71 chr1 15925601 15925763 -266267901 - ORSL DNA AcHobo -31 244 83 1735 189 0 3 chr1 15925763 15926075 -266267589 - AluJo SINE Alu -1 311 1 513 192 62 71 chr1 15926075 15926136 -266267528 - ORSL DNA AcHobo -192 83 23 358 234 224 88 chr1 15926185 15926260 -266267404 - MIR SINE MIR 0 262 199 2358 91 3 0 chr1 15926260 15926569 -266267095 - AluSx SINE Alu -2 310 1 358 234 224 88 chr1 15926569 15926685 -266266979 - MIR SINE MIR -63 199 45 863 165 0 16 chr1 15927064 15927246 -266266418 + (TG)n Simple_repeat Simple_repeat 2 180 0 216 195 172 35 chr1 15927409 15927496 -266266168 - MIR SINE MIR -75 133 35 1790 117 48 15 chr1 15927881 15928154 -266265510 + AluSx SINE Alu 1 282 -30 186 43 0 0 chr1 15928163 15928186 -266265478 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1446 98 25 0 chr1 15928186 15928390 -266265274 + AluSg/x SINE Alu 83 291 -19 329 277 12 0 chr1 15928712 15928795 -266264869 - MIR3 SINE MIR -9 199 116 316 309 32 0 chr1 15929013 15929107 -266264557 + MIR SINE MIR 36 132 -76 1051 146 0 12 chr1 15929108 15929273 -266264391 - FRAM SINE Alu -12 164 2 381 311 50 0 chr1 15929276 15929395 -266264269 + MIR SINE MIR 125 249 -13 1528 163 50 21 chr1 15929425 15929708 -266263956 + AluSx SINE Alu 17 307 -5 1059 158 0 0 chr1 15929708 15929873 -266263791 + AluSg/x SINE Alu 132 296 -14 271 278 157 9 chr1 15930317 15930425 -266263239 + MIR SINE MIR 30 153 -109 269 328 125 0 chr1 15930594 15930722 -266262942 + MIR3 SINE MIR 40 183 -25 838 268 0 71 chr1 15930740 15930852 -266262812 - MIR SINE MIR 0 262 144 2377 87 10 0 chr1 15930852 15931161 -266262503 + AluSq SINE Alu 2 313 0 838 268 0 71 chr1 15931161 15931317 -266262347 - MIR SINE MIR -118 144 13 2121 116 0 0 chr1 15931439 15931749 -266261915 - AluSq SINE Alu 0 310 1 263 372 41 0 chr1 15931760 15931881 -266261783 - MIR SINE MIR -56 206 81 863 249 111 51 chr1 15932433 15932605 -266261059 - L2 LINE L2 -3 3310 3150 2305 92 0 0 chr1 15932605 15932910 -266260754 + AluSx SINE Alu 1 305 -7 863 249 111 51 chr1 15932910 15933321 -266260343 - L2 LINE L2 -163 3150 2701 39 0 0 0 chr1 15933329 15933368 -266260296 + AT_rich Low_complexity Low_complexity 1 39 0 1161 170 62 136 chr1 15933402 15933561 -266260103 - AluSx SINE Alu -13 299 175 185 0 40 0 chr1 15933561 15933586 -266260078 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1161 170 62 136 chr1 15933586 15933749 -266259915 - AluSx SINE Alu -137 175 1 250 319 84 0 chr1 15933753 15933872 -266259792 - L2 LINE L2 -606 2708 2580 360 333 167 0 chr1 15933872 15934016 -266259648 - MIR SINE MIR -75 187 20 433 243 226 11 chr1 15934545 15934722 -266258942 - MIR SINE MIR -11 251 37 201 244 0 0 chr1 15935382 15935427 -266258237 - MIR SINE MIR 0 262 218 334 299 0 0 chr1 15935438 15935525 -266258139 + MIR SINE MIR 163 249 -13 1714 158 13 39 chr1 15935685 15935995 -266257669 + AluJo SINE Alu 9 310 -2 582 294 88 0 chr1 15936612 15936782 -266256882 + MIR SINE MIR 10 194 -68 251 217 71 9 chr1 15937023 15937116 -266256548 - MIR SINE MIR -71 137 33 1044 150 0 2 chr1 15937504 15937788 -266255876 + (TTCA)n Simple_repeat Simple_repeat 1 461 0 190 318 16 63 chr1 15937806 15937932 -266255732 - L2 LINE L2 0 3313 3194 200 298 91 41 chr1 15938912 15939033 -266254631 - L2 LINE L2 -9 3304 3178 224 239 269 0 chr1 15939041 15939171 -266254493 - MIR3 SINE MIR -4 204 40 204 386 83 0 chr1 15939671 15939816 -266253848 - L2 LINE L2 -131 3141 2985 2243 94 0 41 chr1 15939872 15940046 -266253618 - AluSx SINE Alu -5 307 150 2301 65 0 26 chr1 15940046 15940352 -266253312 - AluY SINE Alu -13 298 1 2243 94 0 41 chr1 15940352 15940497 -266253167 - AluSx SINE Alu -162 150 1 1112 213 47 20 chr1 15940637 15940891 -266252773 - MIR SINE MIR 0 262 2 22 0 0 0 chr1 15940916 15940938 -266252726 + AT_rich Low_complexity Low_complexity 1 22 0 310 181 14 14 chr1 15940975 15941047 -266252617 + MLT1J LTR MaLR 236 307 -204 511 172 50 0 chr1 15941310 15941409 -266252255 + MER81 DNA DNA 2 105 -9 509 350 49 21 chr1 15941416 15941742 -266251922 - L2 LINE L2 -460 2854 2520 1983 152 3 0 chr1 15941829 15942138 -266251526 + AluJo SINE Alu 1 310 -2 2093 95 10 23 chr1 15942210 15942515 -266251149 + AluSq SINE Alu 1 301 -12 2576 181 50 8 chr1 15942576 15943061 -266250603 + MLT1D LTR MaLR 1 505 0 897 226 83 17 chr1 15943363 15943593 -266250071 - MIR SINE MIR -5 257 13 283 286 91 32 chr1 15943798 15943952 -266249712 - MLT1H LTR MaLR -13 536 374 236 184 20 0 chr1 15944017 15944066 -266249598 - MLT1H LTR MaLR -481 68 19 334 198 172 26 chr1 15944119 15944235 -266249429 + MIR3 SINE MIR 11 143 -65 2275 82 0 3 chr1 15944351 15944642 -266249022 - AluSq SINE Alu -21 292 3 908 153 169 0 chr1 15945023 15945206 -266248458 + MER58A DNA MER1_type 10 223 -1 293 348 39 34 chr1 15945292 15945441 -266248223 - MIR SINE MIR -19 243 94 294 239 312 36 chr1 15945441 15945579 -266248085 - MER5A DNA MER1_type 0 189 14 1708 116 95 7 chr1 15945719 15946004 -266247660 + AluSx SINE Alu 1 310 -2 245 328 25 49 chr1 15946009 15946131 -266247533 - MIR SINE MIR -77 185 67 221 338 40 0 chr1 15946283 15946357 -266247307 - MIR SINE MIR -102 106 30 2291 97 3 0 chr1 15946560 15946869 -266246795 + AluSg SINE Alu 1 310 0 2133 126 0 0 chr1 15946913 15947215 -266246449 - AluSx SINE Alu -10 302 1 187 284 118 78 chr1 15947389 15947491 -266246173 - MIR SINE MIR -77 185 80 815 228 76 38 chr1 15947512 15947723 -266245941 - MER20 DNA MER1_type 0 219 1 2031 109 3 7 chr1 15947783 15948098 -266245566 + AluSx SINE Alu 1 314 0 2075 121 7 0 chr1 15949036 15949333 -266244331 + AluSx SINE Alu 1 299 -13 2280 94 13 0 chr1 15950337 15950645 -266243019 + AluSx SINE Alu 1 312 0 1025 152 0 0 chr1 15950700 15950858 -266242806 - FRAM SINE Alu -15 161 4 1798 128 3 17 chr1 15950869 15951157 -266242507 - AluJo SINE Alu -15 297 14 354 263 0 0 chr1 15951462 15951542 -266242122 + MER96B DNA MER1_type? 3 82 -335 751 172 23 0 chr1 15951542 15951670 -266241994 + FLAM_A SINE Alu 1 131 -2 247 263 0 0 chr1 15951722 15951779 -266241885 - AluJ/monomer SINE Alu -3 297 241 255 332 55 18 chr1 15951810 15951947 -266241717 - MIR SINE MIR -62 146 1 22 0 0 0 chr1 15952393 15952415 -266241249 + AT_rich Low_complexity Low_complexity 1 22 0 667 205 0 8 chr1 15952415 15952542 -266241122 - FLAM_A SINE Alu -7 126 1 977 87 0 67 chr1 15952542 15952576 -266241088 - AluJb SINE Alu -173 139 104 2580 111 0 8 chr1 15952576 15952954 -266240710 - THE1C LTR MaLR 0 375 1 977 87 0 67 chr1 15952954 15953068 -266240596 - AluJb SINE Alu -208 104 1 468 238 0 8 chr1 15953071 15953193 -266240471 - MER96B DNA MER1_type? -296 121 1 290 289 215 20 chr1 15953654 15953803 -266239861 + MIR SINE MIR 79 256 -6 409 236 98 8 chr1 15954010 15954133 -266239531 + MIR3 SINE MIR 38 171 -37 704 223 0 57 chr1 15955366 15955474 -266238190 + MIR SINE MIR 44 140 -122 1881 129 24 31 chr1 15955474 15955768 -266237896 + AluSx SINE Alu 1 292 -20 704 223 0 57 chr1 15955768 15955834 -266237830 + MIR SINE MIR 140 208 -54 402 220 119 8 chr1 15956471 15956589 -266237075 + MIR3 SINE MIR 13 143 -65 2294 105 10 0 chr1 15956710 15957015 -266236649 - AluSx SINE Alu -4 308 1 266 200 0 0 chr1 15957512 15957557 -266236107 - MLT1K LTR MaLR -343 245 201 2175 102 24 0 chr1 15957987 15958281 -266235383 + AluSx SINE Alu 1 301 -11 633 277 81 17 chr1 15958704 15958939 -266234725 + MIR SINE MIR 13 262 0 2118 124 7 16 chr1 15959514 15959821 -266233843 + AluSp SINE Alu 2 305 -8 559 214 9 0 chr1 15959993 15960105 -266233559 + MER81 DNA DNA 1 113 -1 26 0 0 0 chr1 15960205 15960231 -266233433 + AT_rich Low_complexity Low_complexity 1 26 0 1533 181 61 11 chr1 15960231 15960508 -266233156 + AluJo SINE Alu 1 291 -21 2253 116 0 0 chr1 15960612 15960913 -266232751 + AluSx SINE Alu 11 311 -1 202 132 53 0 chr1 15961004 15961042 -266232622 + MIR3 SINE MIR 120 159 -49 307 260 143 91 chr1 15962158 15962287 -266231377 - L1ME4a LINE L1 0 6121 6000 2418 100 0 0 chr1 15962287 15962586 -266231078 - AluSx SINE Alu -13 299 1 307 260 143 91 chr1 15962586 15962898 -266230766 - L1ME4a LINE L1 -121 6000 5657 2138 138 6 3 chr1 15962970 15963281 -266230383 + AluSx SINE Alu 1 312 0 1238 123 40 26 chr1 15963421 15963648 -266230016 + AluSg/x SINE Alu 65 294 -16 2034 122 20 3 chr1 15963652 15963955 -266229709 + AluSg SINE Alu 3 310 0 1864 163 0 23 chr1 15964516 15964823 -266228841 + AluJb SINE Alu 5 304 -8 506 183 0 42 chr1 15965071 15965191 -266228473 + MLT1K LTR MaLR 133 247 -341 896 191 14 48 chr1 15965304 15965514 -266228150 + MER20 DNA MER1_type 17 219 0 354 287 97 31 chr1 15965586 15965772 -266227892 + MLT1K LTR MaLR 374 575 -13 2224 111 7 3 chr1 15965772 15966079 -266227585 + AluSx SINE Alu 1 308 -4 193 294 108 0 chr1 15966097 15966199 -266227465 - MIR3 SINE MIR -28 180 68 262 297 40 0 chr1 15966349 15966423 -266227241 - MIR SINE MIR -102 106 30 186 273 65 26 chr1 15966549 15966626 -266227038 - MIR SINE MIR -78 130 51 1525 76 10 0 chr1 15966626 15966824 -266226840 + AluSg SINE Alu 1 200 -110 605 200 6 69 chr1 15966824 15966984 -266226680 - AluJb SINE Alu -80 232 83 2353 116 0 0 chr1 15966985 15967295 -266226369 - AluSx SINE Alu -2 310 1 755 228 79 10 chr1 15967558 15967760 -266225904 - MER20 DNA MER1_type -3 216 1 2266 112 3 6 chr1 15967820 15968133 -266225531 + AluSx SINE Alu 1 312 0 252 86 0 0 chr1 15968168 15968203 -266225461 + (GAAAA)n Simple_repeat Simple_repeat 1 35 0 2022 153 3 0 chr1 15969079 15969374 -266224290 + AluSx SINE Alu 1 296 -16 1427 108 16 0 chr1 15970395 15970581 -266223083 + AluSq SINE Alu 1 189 -124 2291 99 3 10 chr1 15970607 15970921 -266222743 - AluSp SINE Alu 0 312 1 2097 130 7 10 chr1 15970944 15971245 -266222419 - AluSx SINE Alu -12 300 1 288 311 89 15 chr1 15971295 15971430 -266222234 - MIR SINE MIR -110 152 8 2236 106 0 3 chr1 15971641 15971943 -266221721 + AluSx SINE Alu 1 301 -11 976 240 86 67 chr1 15971943 15972600 -266221064 - L2 LINE L2 -122 3191 2511 1677 132 21 42 chr1 15972611 15972784 -266220880 - AluJb SINE Alu -30 282 116 2736 85 3 3 chr1 15972784 15973159 -266220505 - THE1C LTR MaLR 0 375 1 1677 132 21 42 chr1 15973159 15973273 -266220391 - AluJb SINE Alu -196 116 1 534 191 0 24 chr1 15973278 15973404 -266220260 + MER96B DNA MER1_type? 295 417 0 220 306 224 14 chr1 15973864 15974011 -266219653 + MIR SINE MIR 79 256 -6 442 196 93 0 chr1 15974218 15974325 -266219339 + MIR3 SINE MIR 38 154 -54 2269 93 0 7 chr1 15975153 15975444 -266218220 - AluY SINE Alu -2 309 21 684 248 86 48 chr1 15975915 15976023 -266217641 + MIR SINE MIR 44 146 -116 2101 132 0 3 chr1 15976023 15976319 -266217345 + AluSx SINE Alu 1 295 -17 684 248 86 48 chr1 15976319 15976420 -266217244 + MIR SINE MIR 146 261 -1 386 250 180 10 chr1 15977044 15977249 -266216415 + MIR3 SINE MIR 13 262 0 2223 102 10 0 chr1 15977279 15977572 -266216092 - AluSx SINE Alu -16 296 1 307 273 78 23 chr1 15977987 15978115 -266215549 - MLT1K LTR MaLR -263 325 191 2121 109 28 0 chr1 15978576 15978859 -266214805 + AluSx SINE Alu 1 291 -21 574 281 110 13 chr1 15979281 15979509 -266214155 + MIR SINE MIR 13 262 0 566 209 9 0 chr1 15980248 15980358 -266213306 + MER81 DNA DNA 1 111 -3 26 0 0 0 chr1 15980456 15980482 -266213182 + AT_rich Low_complexity Low_complexity 1 26 0 1681 175 14 14 chr1 15980482 15980773 -266212891 + AluJo SINE Alu 1 291 -21 402 267 133 64 chr1 15982115 15982247 -266211417 - L1ME4a LINE L1 0 6121 6000 2340 109 0 0 chr1 15982247 15982551 -266211113 - AluSx SINE Alu -8 304 1 402 267 133 64 chr1 15982551 15982598 -266211066 - L1ME4a LINE L1 -121 6000 5958 351 0 0 0 chr1 15982598 15982637 -266211027 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 402 267 133 64 chr1 15982637 15982891 -266210773 - L1ME4a LINE L1 -163 5958 5657 2235 101 14 7 chr1 15982963 15983260 -266210404 + AluSx SINE Alu 1 299 -13 1950 164 0 16 chr1 15983853 15984163 -266209501 + AluJb SINE Alu 1 305 -7 555 134 134 0 chr1 15984455 15984552 -266209112 + FLAM_A SINE Alu 1 110 -32 710 256 79 0 chr1 15984824 15985027 -266208637 + MER20 DNA MER1_type 1 219 0 201 333 0 0 chr1 15986589 15986640 -266207024 - MIR SINE MIR -67 141 91 2327 117 0 0 chr1 15986661 15986959 -266206705 + AluSx SINE Alu 2 299 -13 2647 65 0 0 chr1 15986959 15987267 -266206397 + AluY SINE Alu 1 308 -3 240 333 83 15 chr1 15987274 15987406 -266206258 - MIR SINE MIR -6 256 116 295 276 69 0 chr1 15987492 15987579 -266206085 - MIR SINE MIR -82 126 34 1642 131 75 42 chr1 15987925 15988260 -266205404 + MER4A LTR ERV1 1 346 -318 673 161 274 20 chr1 15988269 15988517 -266205147 + MER4C LTR ERV1 149 459 -6 2464 189 37 5 chr1 15988523 15989121 -266204543 + L1 LINE L1 3867 4483 -1663 1817 157 50 0 chr1 15989124 15989404 -266204260 + AluJb SINE Alu 1 294 -18 2043 119 0 28 chr1 15989405 15989725 -266203939 + AluSx SINE Alu 1 311 -1 1289 134 107 40 chr1 15989834 15990133 -266203531 + MER4A LTR ERV1 28 346 -318 628 179 279 16 chr1 15990142 15990393 -266203271 + MER4C LTR ERV1 149 465 0 3921 188 46 17 chr1 15990395 15990987 -266202677 + L1 LINE L1 3871 4444 -1702 1817 157 50 0 chr1 15990987 15991267 -266202397 + AluJb SINE Alu 1 294 -18 2399 106 0 3 chr1 15991268 15991580 -266202084 + AluSx SINE Alu 1 311 -1 3921 188 46 17 chr1 15991580 15991603 -266202061 + L1 LINE L1 4444 4465 -1681 2358 110 0 0 chr1 15991603 15991911 -266201753 + AluSc SINE Alu 1 308 -1 3921 188 46 17 chr1 15991911 15992292 -266201372 + L1 LINE L1 4465 4899 -1247 457 185 42 59 chr1 15992294 15992316 -266201348 - AluJo/FRAM SINE Alu -2 310 289 2015 130 25 0 chr1 15992316 15992601 -266201063 - AluJb SINE Alu -2 310 19 457 185 42 59 chr1 15992601 15992697 -266200967 - AluJo/FRAM SINE Alu -23 289 194 306 83 0 50 chr1 15992704 15992764 -266200900 + L1MB2 LINE L1 6115 6171 0 2284 85 41 0 chr1 15992983 15993277 -266200387 - AluY SINE Alu -5 306 1 206 304 51 13 chr1 15993326 15993405 -266200259 - MIR SINE MIR -88 174 93 485 303 118 15 chr1 15993757 15994028 -266199636 + L1ME4a LINE L1 5593 5891 -230 25 0 0 0 chr1 15994360 15994385 -266199279 + AT_rich Low_complexity Low_complexity 1 25 0 79 30 0 0 chr1 15995595 15995695 -266197969 + AT_rich Low_complexity Low_complexity 1 100 0 633 174 21 35 chr1 15995998 15996142 -266197522 - FRAM SINE Alu -7 169 28 1500 140 0 19 chr1 15996546 15996760 -266196904 + AluJb SINE Alu 3 212 -100 332 254 100 18 chr1 15996926 15997036 -266196628 + L2 LINE L2 3193 3311 -2 708 93 83 0 chr1 15997469 15997577 -266196087 - FLAM_C SINE Alu -25 118 2 549 148 30 0 chr1 15998456 15998557 -266195107 + MER5A DNA MER1_type 1 104 -85 219 302 226 0 chr1 15998628 15998734 -266194930 - MER5A DNA MER1_type -8 181 52 384 250 0 11 chr1 15998805 15998897 -266194767 - Charlie8 DNA MER1_type -2235 182 92 300 309 32 0 chr1 15998945 15999068 -266194596 - MIR3 SINE MIR -48 160 34 2276 91 0 60 chr1 15999606 15999925 -266193739 + AluSx SINE Alu 1 300 -12 357 242 217 0 chr1 16000052 16000172 -266193492 - MIR SINE MIR -71 191 46 952 236 75 20 chr1 16001435 16001740 -266191924 + L1ME2 LINE L1 5512 5833 -329 1297 226 79 82 chr1 16001740 16001841 -266191823 + LTR9 LTR ERV1 1 101 -678 2395 112 0 6 chr1 16001841 16002154 -266191510 - AluSq SINE Alu -2 311 1 1297 226 79 82 chr1 16002154 16002738 -266190926 + LTR9 LTR ERV1 101 779 0 277 227 84 84 chr1 16002738 16002782 -266190882 + L1ME2 LINE L1 5830 5873 -291 2074 76 32 63 chr1 16002782 16003098 -266190566 + AluSq SINE Alu 1 306 -7 277 227 84 84 chr1 16003098 16003207 -266190457 + L1ME2 LINE L1 5872 5983 -181 244 218 0 18 chr1 16003223 16003278 -266190386 + L2 LINE L2 3219 3272 0 2270 84 3 0 chr1 16003372 16003669 -266189995 - AluSx SINE Alu -14 298 1 377 302 115 36 chr1 16003724 16003976 -266189688 + MARNA DNA Mariner 109 380 -206 1035 151 6 20 chr1 16004379 16004687 -266188977 - LTR42 LTR ERVL -1 494 153 810 205 51 0 chr1 16004687 16004843 -266188821 - AluSg/x SINE Alu -8 304 141 2166 118 0 0 chr1 16004846 16005143 -266188521 - AluSx SINE Alu -15 297 1 1211 112 12 0 chr1 16005144 16005305 -266188359 - LTR42 LTR ERVL -332 163 1 199 279 12 47 chr1 16005439 16005525 -266188139 - MIR SINE MIR -70 192 110 2075 183 85 44 chr1 16005661 16006120 -266187544 + MLT2B1 LTR ERVL 3 480 -40 237 263 0 0 chr1 16006135 16006192 -266187472 + (TA)n Simple_repeat Simple_repeat 2 58 0 293 251 26 0 chr1 16006192 16006281 -266187383 - MIR SINE MIR -81 127 37 2200 86 0 13 chr1 16006315 16006617 -266187047 + AluY SINE Alu 1 298 -13 277 222 167 14 chr1 16006661 16006733 -266186931 - L2 LINE L2 -2 3311 3229 281 100 0 0 chr1 16006754 16006794 -266186870 + MLT2D LTR ERVL 367 406 -8 308 248 129 30 chr1 16007066 16007167 -266186497 + L2 LINE L2 3162 3272 0 707 251 18 54 chr1 16007227 16007450 -266186214 + MIR SINE MIR 34 248 -14 969 194 28 28 chr1 16007519 16007730 -266185934 - MER20 DNA MER1_type -8 211 1 282 208 187 32 chr1 16007956 16008061 -266185603 + MIR SINE MIR 37 139 -69 1849 158 7 3 chr1 16008162 16008472 -266185192 + AluSx SINE Alu 1 311 -1 587 235 12 31 chr1 16008940 16009102 -266184562 + L1ME3 LINE L1 5728 5886 -276 289 327 93 0 chr1 16009101 16009208 -266184456 + L1ME3 LINE L1 5443 5559 -2249 * 866 179 0 0 chr1 16009212 16009358 -266184306 + AluJb SINE Alu 1 147 -161 2221 103 0 0 chr1 16009358 16009658 -266184006 + AluSx SINE Alu 1 300 -12 1511 114 57 4 chr1 16009687 16009933 -266183731 + AluJb SINE Alu 42 300 -12 678 233 0 0 chr1 16009948 16010077 -266183587 - FLAM_A SINE Alu -4 129 1 234 323 104 0 chr1 16010078 16010174 -266183490 + L1ME3 LINE L1 5548 5653 -2155 526 327 87 1 chr1 16010283 16010502 -266183162 + MIR SINE MIR 23 262 0 1313 240 44 32 chr1 16010600 16011009 -266182655 + L1ME3 LINE L1 5728 6141 -21 325 282 29 48 chr1 16011009 16011112 -266182552 + MIR SINE MIR 80 180 -82 207 0 0 0 chr1 16011303 16011326 -266182338 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 272 313 121 10 chr1 16012020 16012119 -266181545 - L2 LINE L2 -40 3273 3164 2009 129 10 10 chr1 16012301 16012612 -266181052 - AluSx SINE Alu -1 311 1 1857 146 10 7 chr1 16012617 16012919 -266180745 - AluSx SINE Alu -9 303 1 1825 122 14 20 chr1 16013162 16013457 -266180207 + AluJo SINE Alu 1 293 -19 535 242 73 0 chr1 16013599 16013723 -266179941 + MER3 DNA MER1_type 1 133 -76 1475 180 60 67 chr1 16013723 16014109 -266179555 + LTR13 LTR ERVK 1 437 -570 1457 88 19 10 chr1 16014110 16014315 -266179349 + AluSg SINE Alu 2 208 -102 2527 46 0 0 chr1 16014315 16014620 -266179044 + AluY SINE Alu 1 307 -4 713 133 0 0 chr1 16014622 16014727 -266178937 + AluSg SINE Alu 198 302 -10 2711 162 43 47 chr1 16014727 16015308 -266178356 + LTR13 LTR ERVK 428 1006 -1 364 183 12 24 chr1 16015309 16015391 -266178273 + MER3 DNA MER1_type 129 209 0 405 240 23 105 chr1 16015748 16015860 -266177804 + Charlie8 DNA MER1_type 47 142 -2275 1351 171 53 36 chr1 16015860 16016141 -266177523 + AluJo SINE Alu 1 286 -26 405 240 23 105 chr1 16016141 16016199 -266177465 + Charlie8 DNA MER1_type 142 203 -2214 458 257 267 0 chr1 16016673 16016860 -266176804 - MIR SINE MIR -19 243 7 394 312 122 3 chr1 16016995 16017254 -266176410 + MER93a LTR ERV1 61 358 -44 210 145 0 81 chr1 16018273 16018335 -266175329 + (CCCCG)n Simple_repeat Simple_repeat 3 59 0 558 308 57 40 chr1 16018797 16019024 -266174640 - MIR SINE MIR -14 248 18 498 246 143 35 chr1 16019071 16019274 -266174390 - L2 LINE L2 0 3313 3089 478 237 25 25 chr1 16019504 16019622 -266174042 + MIR3 SINE MIR 88 205 -3 509 279 116 16 chr1 16020547 16020737 -266172927 - MIR SINE MIR -5 257 49 2187 90 7 3 chr1 16021295 16021596 -266172068 + AluSx SINE Alu 1 302 -10 1824 136 28 62 chr1 16022900 16023254 -266170410 + MER2 DNA MER2_type 2 343 -1 939 112 0 22 chr1 16023277 16023411 -266170253 + AluJo SINE Alu 1 131 -171 660 90 11 0 chr1 16023411 16023500 -266170164 + AluJo SINE Alu 204 293 -19 384 274 62 62 chr1 16023742 16023838 -266169826 - MIR SINE MIR -15 247 149 2161 110 0 0 chr1 16023838 16024130 -266169534 - AluSx SINE Alu -20 292 1 384 274 62 62 chr1 16024130 16024179 -266169485 - MIR SINE MIR -112 150 102 22 0 0 0 chr1 16024461 16024483 -266169181 + AT_rich Low_complexity Low_complexity 1 22 0 739 142 0 0 chr1 16026359 16026465 -266167199 + FLAM_C SINE Alu 2 107 -36 2207 110 0 3 chr1 16026487 16026795 -266166869 + AluSx SINE Alu 1 307 -5 1951 89 52 10 chr1 16027583 16027874 -266165790 + AluSg SINE Alu 1 303 -7 1404 176 75 14 chr1 16028606 16028885 -266164779 + AluJb SINE Alu 1 296 -16 1243 183 11 27 chr1 16028905 16029168 -266164496 - AluJo SINE Alu -14 298 40 2379 73 0 19 chr1 16029204 16029521 -266164143 - AluSp SINE Alu -2 311 1 2107 119 0 0 chr1 16029998 16030292 -266163372 - AluSx SINE Alu -18 294 1 180 386 57 0 chr1 16030527 16030597 -266163067 - L2 LINE L2 -80 3192 3119 696 284 96 4 chr1 16030777 16031016 -266162648 - MIR SINE MIR 0 262 2 2316 88 0 0 chr1 16031257 16031562 -266162102 + AluSg SINE Alu 2 306 -4 2042 118 7 0 chr1 16031577 16031873 -266161791 + AluSx SINE Alu 1 298 -14 2437 61 0 3 chr1 16032375 16032687 -266160977 - AluY SINE Alu 0 311 1 828 197 33 13 chr1 16032687 16032839 -266160825 - AluJb SINE Alu -10 302 148 2042 125 3 0 chr1 16032887 16033183 -266160481 + AluSx SINE Alu 1 297 -15 2229 112 0 0 chr1 16033185 16033490 -266160174 + AluSx SINE Alu 1 305 -7 343 219 55 0 chr1 16033533 16033606 -266160058 - AluSc SINE Alu -106 193 117 543 249 52 10 chr1 16033615 16033764 -266159900 + MIR SINE MIR 17 174 -34 607 144 0 0 chr1 16033787 16033877 -266159787 - AluJ/FLAM SINE Alu -221 91 2 362 315 163 20 chr1 16034100 16034303 -266159361 + MIR SINE MIR 19 250 -12 513 247 60 67 chr1 16034527 16034677 -266158987 + MIR3 SINE MIR 37 185 -23 289 156 25 188 chr1 16034768 16034928 -266158736 + L1ME3A LINE L1 5615 5748 -373 360 226 0 60 chr1 16034943 16035027 -266158637 + MER21B LTR ERV1 12 90 -773 995 234 173 0 chr1 16035050 16035298 -266158366 + MER21B LTR ERV1 20 310 -553 2088 196 56 5 chr1 16035491 16035905 -266157759 + MER21B LTR ERV1 317 751 -112 827 124 0 0 chr1 16035959 16036072 -266157592 + FLAM_A SINE Alu 4 116 -17 2398 268 70 15 chr1 16036193 16037140 -266156524 - L2 LINE L2 -20 3293 2302 321 26 0 0 chr1 16037290 16037328 -266156336 + (CA)n Simple_repeat Simple_repeat 1 38 0 261 238 88 0 chr1 16037328 16037408 -266156256 - L1ME LINE L1 -516 5605 5519 309 209 58 70 chr1 16038215 16038301 -266155363 + L1ME3A LINE L1 5839 5923 -247 182 263 0 0 chr1 16038679 16038717 -266154947 - L2 LINE L2 -217 3055 3018 412 282 51 62 chr1 16038785 16038980 -266154684 - L2 LINE L2 -457 2857 2665 1714 164 0 30 chr1 16039164 16039463 -266154201 + AluJb SINE Alu 1 290 -22 326 23 23 0 chr1 16039520 16039563 -266154101 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 267 103 0 0 chr1 16040037 16040076 -266153588 + (T)n Simple_repeat Simple_repeat 1 39 0 530 243 86 63 chr1 16040175 16040284 -266153380 - MIR SINE MIR -4 258 153 2132 98 0 10 chr1 16040284 16040580 -266153084 - AluSg SINE Alu -10 300 8 2034 121 3 0 chr1 16040586 16040883 -266152781 - AluSx SINE Alu -14 298 1 530 243 86 63 chr1 16040883 16040988 -266152676 - MIR SINE MIR -113 149 32 22 56 0 0 chr1 16041730 16041766 -266151898 + AT_rich Low_complexity Low_complexity 1 36 0 312 250 136 108 chr1 16041809 16042133 -266151531 + L1M4 LINE L1 4991 5323 -823 493 323 22 35 chr1 16042319 16042545 -266151119 - L2 LINE L2 -908 2406 2184 1755 125 49 40 chr1 16042579 16042674 -266150990 + MER44D DNA MER2_type 8 101 -2390 2485 42 0 13 chr1 16042674 16042980 -266150684 + AluY SINE Alu 1 302 -9 1755 125 49 40 chr1 16042980 16043213 -266150451 + MER44D DNA MER2_type 101 609 0 316 293 81 0 chr1 16043592 16043691 -266149973 - L1ME LINE L1 -324 5846 5740 3136 193 106 61 chr1 16043748 16044008 -266149656 + Charlie1a DNA MER1_type 1 248 -2513 2258 92 0 0 chr1 16044008 16044311 -266149353 - AluSx SINE Alu -9 303 1 3136 193 106 61 chr1 16044311 16044743 -266148921 + Charlie1a DNA MER1_type 248 659 -2102 1664 132 25 65 chr1 16044743 16044937 -266148727 - AluJb SINE Alu 0 312 135 1707 118 16 0 chr1 16044937 16045183 -266148481 + AluSx SINE Alu 46 295 -17 1664 132 25 65 chr1 16045183 16045313 -266148351 - AluJb SINE Alu -177 135 1 3136 193 106 61 chr1 16045313 16045347 -266148317 + Charlie1a DNA MER1_type 659 690 -2071 2109 99 3 14 chr1 16045347 16045641 -266148023 + AluSg SINE Alu 1 291 -19 3136 193 106 61 chr1 16045641 16045751 -266147913 + Charlie1a DNA MER1_type 690 877 -578 232 174 0 0 chr1 16045760 16045806 -266147858 + T-rich Low_complexity Low_complexity 1 46 0 2142 102 0 7 chr1 16045908 16046211 -266147453 - AluSx SINE Alu -11 301 1 351 182 26 68 chr1 16046211 16046371 -266147293 - L1M4 LINE L1 -801 5345 5201 2309 86 3 0 chr1 16046371 16046675 -266146989 - AluSq SINE Alu -8 305 1 351 182 26 68 chr1 16046675 16046695 -266146969 - L1M4 LINE L1 -945 5201 5182 1627 216 52 38 chr1 16046702 16047063 -266146601 - L1ME3A LINE L1 0 6170 5799 1964 142 3 0 chr1 16047063 16047365 -266146299 + AluJb SINE Alu 1 303 -9 1627 216 52 38 chr1 16047365 16047499 -266146165 - L1ME3A LINE L1 -371 5799 5668 244 257 56 51 chr1 16047477 16047691 -266145973 - L1M4 LINE L1 -961 5185 4971 * 314 226 48 110 chr1 16047777 16047923 -266145741 - L1M4 LINE L1 -1462 4684 4548 289 257 66 11 chr1 16048012 16048195 -266145469 - L1M4 LINE L1 -1593 4553 4361 1844 127 7 39 chr1 16048235 16048542 -266145122 + AluSx SINE Alu 1 297 -15 2274 87 3 0 chr1 16048544 16048842 -266144822 + AluSg SINE Alu 1 299 -11 2268 88 3 13 chr1 16048847 16049153 -266144511 + AluSp SINE Alu 1 303 -10 671 159 84 0 chr1 16049163 16049270 -266144394 + FLAM_C SINE Alu 2 117 -16 21 0 0 0 chr1 16049270 16049291 -266144373 + AT_rich Low_complexity Low_complexity 1 21 0 1366 273 46 46 chr1 16049334 16049362 -266144302 - L1M4 LINE L1 -1800 4346 4319 1784 93 52 11 chr1 16049362 16049665 -266143999 - AluSx SINE Alu 0 314 1 1366 273 46 46 chr1 16049665 16050302 -266143362 - L1M4 LINE L1 -1826 4320 3679 226 297 88 0 chr1 16050314 16050405 -266143259 - L1M4 LINE L1 -2533 3613 3515 541 243 92 69 chr1 16050464 16050876 -266142788 - L1M4 LINE L1 -2812 3334 2933 958 179 12 0 chr1 16050876 16051038 -266142626 - AluJo SINE Alu -2 300 137 541 243 92 69 chr1 16051038 16051051 -266142613 - L1M4 LINE L1 -3213 2933 2922 1524 142 161 0 chr1 16051051 16051312 -266142352 - AluSq SINE Alu 0 303 1 1782 159 0 19 chr1 16051313 16051628 -266142036 - AluJo SINE Alu -3 309 1 688 200 0 15 chr1 16051638 16051773 -266141891 - AluJo SINE Alu -169 133 1 541 243 92 69 chr1 16051773 16051898 -266141766 - L1M4 LINE L1 -3232 2914 2757 2049 117 0 0 chr1 16052062 16052379 -266141285 - AluSg SINE Alu 0 317 1 2544 70 3 0 chr1 16052923 16053225 -266140439 + AluSp SINE Alu 1 303 -10 328 246 14 0 chr1 16053322 16053391 -266140273 - L2 LINE L2 -218 3054 2985 613 289 23 28 chr1 16053873 16054091 -266139573 + L2 LINE L2 2514 2730 -584 * 633 257 257 39 chr1 16054078 16054409 -266139255 + L2 LINE L2 2911 3313 0 2212 114 3 7 chr1 16054544 16054843 -266138821 + AluSx SINE Alu 1 298 -14 667 163 0 0 chr1 16054890 16054988 -266138676 + AluJ/FLAM SINE Alu 4 101 -211 35 54 0 0 chr1 16054996 16055052 -266138612 + AT_rich Low_complexity Low_complexity 1 56 0 2040 134 19 10 chr1 16055616 16055923 -266137741 - AluJb SINE Alu -2 310 1 2123 132 3 3 chr1 16056388 16056684 -266136980 + AluSq SINE Alu 1 296 -17 2167 86 6 71 chr1 16056687 16057013 -266136651 + AluY SINE Alu 1 305 -6 2192 101 47 3 chr1 16057670 16057968 -266135696 - AluSq SINE Alu 0 313 3 2417 102 0 0 chr1 16057971 16058276 -266135388 - AluSx SINE Alu -7 305 1 272 316 31 0 chr1 16058355 16058453 -266135211 + L2 LINE L2 3172 3272 0 203 290 70 70 chr1 16058479 16058579 -266135085 + L2 LINE L2 3141 3240 -32 1990 144 3 7 chr1 16059742 16060041 -266133623 + AluJo SINE Alu 1 298 -14 186 133 0 0 chr1 16060418 16060448 -266133216 + (TG)n Simple_repeat Simple_repeat 1 30 0 2357 90 3 31 chr1 16062769 16063091 -266130573 - AluSp SINE Alu 0 313 1 850 173 0 0 chr1 16063514 16063647 -266130017 - FLAM_C SINE Alu -5 138 6 1816 77 0 0 chr1 16065088 16065308 -266128356 + AluSg/x SINE Alu 83 302 -8 290 75 38 0 chr1 16065327 16065380 -266128284 + T-rich Low_complexity Low_complexity 2 56 0 854 54 99 0 chr1 16065380 16065491 -266128173 - AluSq/x SINE Alu -191 122 1 2420 104 0 0 chr1 16065494 16065801 -266127863 - AluSx SINE Alu -5 307 1 643 92 0 0 chr1 16065961 16066048 -266127616 - AluSg/x SINE Alu -12 297 211 2326 92 7 3 chr1 16066117 16066410 -266127254 + AluSq SINE Alu 1 294 -19 199 265 10 78 chr1 16067356 16067458 -266126206 + MIR SINE MIR 125 219 -43 2309 104 3 3 chr1 16067520 16067819 -266125845 - AluSx SINE Alu -13 299 1 252 299 245 31 chr1 16068089 16068444 -266125220 - L2 LINE L2 -5 3267 2837 435 212 85 42 chr1 16068638 16068756 -266124908 - L2 LINE L2 -1 3312 3190 1631 156 25 21 chr1 16068871 16069197 -266124467 - AluJb SINE Alu 0 327 1 2231 87 17 23 chr1 16069247 16069546 -266124118 - AluSp SINE Alu -16 297 1 2271 100 0 0 chr1 16069579 16069869 -266123795 - AluSg SINE Alu -20 290 1 2506 83 0 3 chr1 16069879 16070191 -266123473 - AluY SINE Alu 0 311 1 2460 81 0 0 chr1 16070434 16070731 -266122933 + AluSg SINE Alu 1 297 -13 313 310 152 6 chr1 16071038 16071209 -266122455 - MIR SINE MIR -9 253 58 2472 88 0 0 chr1 16071439 16071736 -266121928 - AluSx SINE Alu -15 297 1 2404 106 3 0 chr1 16073343 16073646 -266120018 - AluSx SINE Alu -8 304 1 693 107 39 29 chr1 16073723 16073826 -266119838 + AluJb SINE Alu 186 289 -23 2383 100 3 0 chr1 16073836 16074145 -266119519 + AluSp SINE Alu 2 311 -2 501 110 0 0 chr1 16074147 16074220 -266119444 + FLAM_A SINE Alu 62 134 -8 1566 198 51 3 chr1 16074222 16074515 -266119149 + AluJo SINE Alu 1 307 -5 954 134 89 59 chr1 16074580 16074734 -266118930 + MER3 DNA MER1_type 2 165 -44 2023 91 80 4 chr1 16074734 16075010 -266118654 + AluSq SINE Alu 1 297 -16 954 134 89 59 chr1 16075010 16075057 -266118607 + MER3 DNA MER1_type 165 209 0 345 280 88 96 chr1 16075081 16075128 -266118536 - MIR SINE MIR 0 262 216 2523 80 10 0 chr1 16075128 16075430 -266118234 + AluSq SINE Alu 1 305 -8 345 280 88 96 chr1 16075430 16075643 -266118021 - MIR SINE MIR -46 216 4 2194 102 0 0 chr1 16075857 16076132 -266117532 + AluSx SINE Alu 1 275 -37 186 43 0 0 chr1 16076136 16076159 -266117505 + (CA)n Simple_repeat Simple_repeat 1 23 0 900 187 106 0 chr1 16076599 16076797 -266116867 - MER20 DNA MER1_type 0 219 1 340 299 219 0 chr1 16076846 16076983 -266116681 + MIR SINE MIR 95 261 -1 2282 69 7 33 chr1 16077285 16077590 -266116074 - AluSg SINE Alu -13 297 1 27 29 0 0 chr1 16078050 16078084 -266115580 + GC_rich Low_complexity Low_complexity 1 34 0 862 105 40 8 chr1 16078420 16078544 -266115120 - AluJo SINE Alu -176 136 9 203 133 0 0 chr1 16078684 16078714 -266114950 + (CTAG)n Simple_repeat Simple_repeat 3 32 0 1118 131 0 0 chr1 16078714 16078867 -266114797 - FRAM SINE Alu -13 153 1 2441 57 0 0 chr1 16078909 16079235 -266114429 + AluY SINE Alu 1 326 0 2371 71 10 3 chr1 16079473 16079767 -266113897 + AluY SINE Alu 1 296 -15 237 240 0 0 chr1 16080055 16080105 -266113559 - L2 LINE L2 -1 3271 3222 1209 165 0 25 chr1 16080768 16080968 -266112696 - AluJo SINE Alu -17 295 101 1009 188 0 0 chr1 16080968 16081133 -266112531 + AluJb SINE Alu 5 169 -143 3416 132 87 19 chr1 16081133 16081894 -266111770 - LTR12 LTR ERV1 0 714 1 809 168 7 7 chr1 16081894 16082031 -266111633 + AluJb SINE Alu 166 302 -10 632 231 0 17 chr1 16082031 16082148 -266111516 - AluJo SINE Alu -196 116 2 467 144 7 122 chr1 16082175 16082248 -266111416 + Charlie1a DNA MER1_type 1332 1383 -1378 1694 142 20 33 chr1 16082248 16082550 -266111114 - AluJo SINE Alu -14 298 1 467 144 7 122 chr1 16082550 16082615 -266111049 + Charlie1a DNA MER1_type 1383 1454 -1 306 243 65 47 chr1 16082624 16082731 -266110933 + MER5A DNA MER1_type 1 109 -80 2109 122 3 0 chr1 16082744 16083038 -266110626 + AluSx SINE Alu 1 295 -17 1863 162 0 29 chr1 16083045 16083354 -266110310 + AluJo SINE Alu 1 300 -12 2351 82 0 55 chr1 16083363 16083691 -266109973 + AluSg SINE Alu 1 310 0 2392 103 0 6 chr1 16083697 16084009 -266109655 + AluSg SINE Alu 1 310 0 2224 101 0 17 chr1 16084232 16084366 -266109298 + AluSx SINE Alu 3 138 -172 2393 104 3 0 chr1 16084366 16084664 -266109000 + AluSp SINE Alu 1 299 -14 2224 101 0 17 chr1 16084664 16084842 -266108822 + AluSx SINE Alu 138 310 0 657 168 0 9 chr1 16084883 16084990 -266108674 + AluJo SINE Alu 2 107 -205 1276 111 11 0 chr1 16085006 16085186 -266108478 - AluSg/x SINE Alu -8 302 121 23 68 0 0 chr1 16085186 16085230 -266108434 + AT_rich Low_complexity Low_complexity 1 44 0 2380 104 0 13 chr1 16085914 16086230 -266107434 + AluSx SINE Alu 1 312 0 1225 162 13 40 chr1 16086241 16086469 -266107195 + AluJo SINE Alu 82 303 -9 646 164 31 16 chr1 16086470 16086594 -266107070 - MER31A LTR ERV1 -15 470 345 877 231 74 57 chr1 16086594 16087114 -266106550 + MER4C LTR ERV1 1 465 0 247 136 23 0 chr1 16087114 16087158 -266106506 - MER31A LTR ERV1 -137 348 304 236 67 0 0 chr1 16087160 16087190 -266106474 - MER31A LTR ERV1 -453 32 3 2294 107 0 0 chr1 16087190 16087488 -266106176 + AluSx SINE Alu 1 298 -14 2199 123 3 3 chr1 16087560 16087862 -266105802 + AluSx SINE Alu 1 302 -10 983 104 8 8 chr1 16087862 16087996 -266105668 + AluSq/x SINE Alu 2 135 -178 1860 142 3 27 chr1 16087996 16088329 -266105335 + AluSx SINE Alu 1 326 0 2387 85 3 0 chr1 16088639 16088932 -266104732 - AluSg SINE Alu -16 294 1 1939 231 37 15 chr1 16089552 16090015 -266103649 + MER21B LTR ERV1 255 727 -136 1341 198 88 53 chr1 16090015 16090360 -266103304 + MSTB1 LTR MaLR 1 363 -69 2254 108 7 7 chr1 16090360 16090667 -266102997 - AluSx SINE Alu -5 307 1 1341 198 88 53 chr1 16090667 16090720 -266102944 + MSTB1 LTR MaLR 363 413 -19 1818 133 0 4 chr1 16091004 16091286 -266102378 - AluSx SINE Alu 0 309 29 549 129 72 36 chr1 16091434 16091573 -266102091 - L1MB8 LINE L1 -1 6177 6034 201 238 138 50 chr1 16091770 16091850 -266101814 - L2 LINE L2 -1 3271 3185 1520 229 42 42 chr1 16091971 16092123 -266101541 + L1MEc LINE L1 36 187 -6209 2395 72 0 0 chr1 16092123 16092415 -266101249 + AluSg SINE Alu 1 292 -18 1520 229 42 42 chr1 16092415 16092720 -266100944 + L1MEc LINE L1 186 493 -5903 1643 141 4 15 chr1 16092746 16093008 -266100656 - MER1B DNA MER1_type -80 259 1 629 218 34 20 chr1 16093016 16093155 -266100509 + L1MEc LINE L1 527 670 -5726 2264 109 3 0 chr1 16093155 16093457 -266100207 - AluSx SINE Alu -8 304 2 2102 110 7 3 chr1 16093492 16093782 -266099882 - AluSg SINE Alu -14 296 6 2299 95 3 0 chr1 16093791 16094086 -266099578 - AluSq SINE Alu -17 296 1 428 136 12 37 chr1 16094353 16094434 -266099230 + MER5A DNA MER1_type 28 106 -83 2426 68 0 0 chr1 16094456 16094748 -266098916 + AluSg SINE Alu 1 292 -18 1583 132 22 22 chr1 16094817 16095089 -266098575 + MER7A DNA MER2_type 1 270 -76 858 180 0 13 chr1 16095089 16095239 -266098425 + AluJo SINE Alu 1 148 -164 1611 137 24 103 chr1 16095242 16095571 -266098093 + AluJo SINE Alu 6 308 -4 255 186 171 0 chr1 16095571 16095641 -266098023 + MER7A DNA MER2_type 254 335 -1 2106 71 32 74 chr1 16095850 16096161 -266097503 + AluSg1 SINE Alu 1 298 -11 1634 104 69 9 chr1 16097167 16097398 -266096266 + AluSx SINE Alu 1 245 -67 1051 88 15 0 chr1 16097530 16097667 -266095997 + AluSx SINE Alu 6 144 -168 1232 123 6 0 chr1 16098457 16098636 -266095028 + AluSx SINE Alu 119 298 -12 577 286 39 22 chr1 16098672 16098816 -266094848 + MIR SINE MIR 66 215 -47 745 272 78 4 chr1 16098816 16099059 -266094605 + MIR SINE MIR 2 262 0 577 286 39 22 chr1 16099059 16099096 -266094568 + MIR SINE MIR 215 250 -12 346 275 295 0 chr1 16099634 16099834 -266093830 + L2 LINE L2 2448 2706 -608 974 123 16 102 chr1 16099837 16099902 -266093762 - L1MB8 LINE L1 -1 6177 6108 2175 108 3 3 chr1 16099902 16100199 -266093465 + AluSx SINE Alu 1 297 -15 974 123 16 102 chr1 16100199 16100377 -266093287 - L1MB8 LINE L1 -70 6108 5955 2408 88 0 7 chr1 16100377 16100685 -266092979 + AluY SINE Alu 2 307 -4 26 0 0 0 chr1 16100723 16100749 -266092915 + AT_rich Low_complexity Low_complexity 1 26 0 1574 156 24 63 chr1 16100750 16100904 -266092760 - L1MB8 LINE L1 -217 5961 5802 352 68 14 176 chr1 16100904 16100944 -266092720 - U7 snRNA snRNA 0 63 39 2434 94 0 3 chr1 16100944 16101253 -266092411 - AluSg SINE Alu -2 308 1 352 68 14 176 chr1 16101253 16101286 -266092378 - U7 snRNA snRNA -24 39 2 1574 156 24 63 chr1 16101286 16101509 -266092155 - L1MB8 LINE L1 -376 5802 5599 2198 140 0 0 chr1 16101510 16101818 -266091846 - AluSx SINE Alu -4 308 1 779 156 23 0 chr1 16101826 16101954 -266091710 - FLAM_C SINE Alu -7 136 6 1151 119 0 35 chr1 16101958 16102089 -266091575 - L1MB8 LINE L1 -574 5610 5487 2088 132 3 28 chr1 16102089 16102271 -266091393 - AluSx SINE Alu -1 311 139 2412 108 0 0 chr1 16102271 16102578 -266091086 - AluSg SINE Alu -3 307 1 2088 132 3 28 chr1 16102578 16102714 -266090950 - AluSx SINE Alu -173 139 1 1151 119 0 35 chr1 16102714 16102783 -266090881 - L1MB8 LINE L1 -697 5487 5417 1045 203 127 62 chr1 16102785 16103125 -266090539 - MLT1G3 LTR MaLR -41 489 128 1379 175 82 11 chr1 16103561 16103829 -266089835 + AluJo SINE Alu 5 291 -21 2371 89 0 0 chr1 16103835 16104127 -266089537 + AluSg SINE Alu 1 292 -18 2562 75 3 0 chr1 16104208 16104516 -266089148 + AluSp SINE Alu 3 311 -2 2096 126 10 0 chr1 16104661 16104954 -266088710 - AluSx SINE Alu -16 296 1 2237 111 0 3 chr1 16105264 16105561 -266088103 - AluSg SINE Alu -14 296 1 825 191 31 25 chr1 16105570 16105732 -266087932 - AluJb SINE Alu -21 291 129 2108 129 0 0 chr1 16105742 16106037 -266087627 + AluSq SINE Alu 1 295 -18 2138 134 3 0 chr1 16106046 16106352 -266087312 + AluSx SINE Alu 1 307 -5 1033 143 12 0 chr1 16106352 16106513 -266087151 + AluSg/x SINE Alu 132 294 -16 22 0 0 0 chr1 16106513 16106535 -266087129 + AT_rich Low_complexity Low_complexity 1 22 0 819 139 0 0 chr1 16106535 16106650 -266087014 - FLAM_C SINE Alu -18 125 11 30 27 0 0 chr1 16106764 16106801 -266086863 + AT_rich Low_complexity Low_complexity 1 37 0 2405 89 0 22 chr1 16107021 16107336 -266086328 - AluSg SINE Alu -2 308 1 2445 94 0 7 chr1 16107336 16107645 -266086019 - AluSq SINE Alu -6 307 1 698 195 0 0 chr1 16108115 16108233 -266085431 + FLAM_C SINE Alu 1 118 -15 1391 156 18 0 chr1 16108280 16108498 -266085166 + AluJo SINE Alu 87 308 -4 548 257 27 9 chr1 16108516 16108661 -266085003 - MLT1G1 LTR MaLR -398 151 3 343 175 117 89 chr1 16108884 16109016 -266084648 + MLT1J LTR MaLR 57 226 -285 300 272 88 29 chr1 16109085 16109221 -266084443 + MLT1L LTR MaLR 466 609 -6 2475 79 0 0 chr1 16109236 16109540 -266084124 - AluSg SINE Alu -6 304 1 214 226 11 97 chr1 16109834 16109927 -266083737 - L2 LINE L2 -12 3260 3176 343 268 142 0 chr1 16110167 16110294 -266083370 + L2 LINE L2 3169 3313 0 181 213 0 40 chr1 16110394 16110469 -266083195 + CT-rich Low_complexity Low_complexity 1 72 0 33 0 0 0 chr1 16110534 16110567 -266083097 + GC_rich Low_complexity Low_complexity 1 33 0 233 116 0 23 chr1 16110770 16110813 -266082851 + (CCGGG)n Simple_repeat Simple_repeat 1 42 0 2354 89 0 16 chr1 16112253 16112566 -266081098 - AluSx SINE Alu -2 310 3 2299 65 55 0 chr1 16112598 16112891 -266080773 - AluY SINE Alu -2 309 1 286 228 158 9 chr1 16113761 16113875 -266079789 - Charlie7 DNA MER1_type 0 2612 2482 247 171 0 100 chr1 16113986 16114056 -266079608 - Charlie7 DNA MER1_type -2510 102 40 1669 182 28 3 chr1 16114542 16114828 -266078836 - AluJb SINE Alu -19 293 1 461 307 53 13 chr1 16114840 16115065 -266078599 - L1ME LINE L1 -303 5818 5585 701 232 212 8 chr1 16115216 16115466 -266078198 - AluYa5 SINE Alu 0 301 1 1676 180 61 10 chr1 16116524 16116700 -266076964 - AluJo SINE Alu -2 310 112 234 0 0 0 chr1 16116700 16116726 -266076938 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1676 180 61 10 chr1 16116726 16116844 -266076820 - AluJo SINE Alu -200 112 1 2043 80 40 14 chr1 16116921 16117217 -266076447 + AluY SINE Alu 1 303 0 1705 156 13 48 chr1 16117598 16117849 -266075815 - AluJb SINE Alu -3 309 70 674 98 130 0 chr1 16117849 16117972 -266075692 - MER85 DNA T2_type 0 139 1 1705 156 13 48 chr1 16117972 16118035 -266075629 - AluJb SINE Alu -242 70 6 284 228 93 62 chr1 16118300 16118462 -266075202 - MIR3 SINE MIR 0 208 42 2038 106 22 0 chr1 16118786 16119059 -266074605 - AluSg SINE Alu -31 279 1 329 309 87 0 chr1 16119276 16119402 -266074262 - L2 LINE L2 0 3272 3136 361 246 215 35 chr1 16119511 16119767 -266073897 - L2 LINE L2 -337 2977 2676 491 313 112 21 chr1 16119989 16120222 -266073442 + MIR SINE MIR 3 256 -6 1195 173 103 15 chr1 16121846 16122117 -266071547 - L1MB7 LINE L1 0 6184 5890 2389 96 0 3 chr1 16122456 16122757 -266070907 + AluSx SINE Alu 1 300 -12 2355 108 0 0 chr1 16122869 16123174 -266070490 - AluSq SINE Alu -8 305 1 2461 84 0 0 chr1 16123976 16124285 -266069379 - AluY SINE Alu -2 309 1 890 191 0 0 chr1 16124411 16124558 -266069106 - AluJo SINE Alu -165 147 1 1040 230 68 32 chr1 16124706 16124948 -266068716 - L1ME2 LINE L1 -21 6143 5886 2355 94 0 0 chr1 16124948 16125246 -266068418 - AluSg SINE Alu -12 298 1 1040 230 68 32 chr1 16125246 16125312 -266068352 - L1ME2 LINE L1 -278 5886 5824 1991 87 4 4 chr1 16125436 16125689 -266067975 + AluSq SINE Alu 44 296 -17 1894 136 3 51 chr1 16126055 16126371 -266067293 - AluJo SINE Alu -11 301 1 365 325 17 8 chr1 16127254 16127371 -266066293 + MER5B DNA MER1_type 1 118 -60 1872 171 10 7 chr1 16127665 16127974 -266065690 - AluJb SINE Alu -2 310 1 391 213 27 0 chr1 16127998 16128073 -266065591 - AluS SINE Alu -226 77 1 1700 143 81 7 chr1 16128120 16128392 -266065272 + AluJo SINE Alu 11 302 -10 2157 100 4 0 chr1 16128567 16128847 -266064817 - AluSx SINE Alu -31 281 1 1442 170 64 14 chr1 16129279 16129562 -266064102 - AluJb SINE Alu -13 299 3 1586 165 50 0 chr1 16129642 16129902 -266063762 - AluJb SINE Alu -39 273 1 647 244 0 42 chr1 16129911 16130079 -266063585 - MER58A DNA MER1_type -17 207 47 653 156 0 150 chr1 16130349 16130516 -266063148 - FLAM_C SINE Alu 0 143 2 2115 98 31 0 chr1 16130523 16130810 -266062854 - AluSx SINE Alu -16 296 1 1860 119 4 4 chr1 16131673 16131933 -266061731 - AluSx SINE Alu -8 304 45 1220 187 27 0 chr1 16132623 16132842 -266060822 - AluJo SINE Alu -23 289 65 1730 143 13 58 chr1 16132867 16133175 -266060489 + AluJb SINE Alu 1 294 -18 353 279 25 62 chr1 16133356 16133517 -266060147 - MIR SINE MIR -3 259 105 249 333 94 7 chr1 16133509 16133654 -266060010 - MIR SINE MIR -41 167 9 * 1967 152 3 3 chr1 16134332 16134628 -266059036 + AluSx SINE Alu 1 296 -16 2343 109 0 0 chr1 16134815 16135128 -266058536 + AluSq SINE Alu 1 313 0 659 186 26 0 chr1 16135642 16135755 -266057909 - FLAM_C SINE Alu -17 116 1 1430 117 0 69 chr1 16135784 16135929 -266057735 + AluSx SINE Alu 1 126 -186 2402 78 7 0 chr1 16135929 16136224 -266057440 + AluY SINE Alu 2 298 -13 1430 117 0 69 chr1 16136224 16136309 -266057355 + AluSx SINE Alu 126 215 -97 1995 225 118 75 chr1 16137043 16137724 -266055940 - HAL1 LINE L1 -121 2386 1736 2732 39 0 0 chr1 16137724 16138035 -266055629 - AluY SINE Alu 0 311 1 1936 111 17 20 chr1 16138037 16138334 -266055330 - AluSx SINE Alu -16 296 1 1995 225 118 75 chr1 16138334 16138729 -266054935 - HAL1 LINE L1 -771 1736 1359 1638 178 17 13 chr1 16138729 16139027 -266054637 + AluJo SINE Alu 1 299 -13 1995 225 118 75 chr1 16139027 16139547 -266054117 - HAL1 LINE L1 -1148 1359 863 2498 80 0 0 chr1 16139547 16139846 -266053818 + AluSq SINE Alu 1 299 -14 1995 225 118 75 chr1 16139846 16139942 -266053722 - HAL1 LINE L1 -1644 863 4 315 299 45 13 chr1 16139951 16140108 -266053556 - L1ME4a LINE L1 -1 6120 5959 2263 119 0 3 chr1 16140279 16140591 -266053073 - AluSx SINE Alu -1 311 1 292 252 47 19 chr1 16140618 16140725 -266052939 - L1ME4a LINE L1 -435 5686 5577 1716 176 0 10 chr1 16140826 16141115 -266052549 + AluSx SINE Alu 5 290 -22 342 278 73 7 chr1 16141495 16141646 -266052018 + L1M4 LINE L1 4489 4649 -1497 590 117 11 0 chr1 16141904 16141998 -266051666 + FLAM_C SINE Alu 43 137 -6 780 159 0 8 chr1 16142094 16142220 -266051444 + FLAM_C SINE Alu 2 126 -17 2127 126 7 0 chr1 16142224 16142525 -266051139 + AluSx SINE Alu 1 303 -9 2144 120 0 0 chr1 16142531 16142814 -266050850 + AluSp SINE Alu 1 283 -30 266 191 0 0 chr1 16143512 16143554 -266050110 - 5S rRNA rRNA -79 42 1 1572 171 73 11 chr1 16143606 16143881 -266049783 + AluJo SINE Alu 2 293 -19 2317 68 4 0 chr1 16143989 16144295 -266049369 - AluY SINE Alu 0 307 1 1885 111 0 0 chr1 16144517 16144761 -266048903 - AluSx SINE Alu -68 244 1 1677 142 59 31 chr1 16145201 16145490 -266048174 - AluJo SINE Alu -5 307 11 1899 116 10 58 chr1 16145538 16145684 -266047980 + AluSx SINE Alu 1 126 -186 2480 80 0 6 chr1 16145684 16145997 -266047667 + AluY SINE Alu 1 311 0 1899 116 10 58 chr1 16145997 16146161 -266047503 + AluSx SINE Alu 126 296 -16 293 0 27 0 chr1 16146396 16146433 -266047231 + (TTTTA)n Simple_repeat Simple_repeat 3 40 0 647 169 42 49 chr1 16146437 16146579 -266047085 - AluJb SINE Alu -31 281 141 26 30 0 0 chr1 16146670 16146703 -266046961 + AT_rich Low_complexity Low_complexity 1 33 0 287 128 0 0 chr1 16146703 16146742 -266046922 - AluJo SINE Alu -11 291 253 1123 213 0 0 chr1 16146742 16146939 -266046725 - AluJo SINE Alu -115 197 1 1758 171 7 20 chr1 16147517 16147816 -266045848 + AluJb SINE Alu 5 299 -13 1590 187 27 23 chr1 16148479 16148612 -266045052 + AluJb SINE Alu 1 132 -180 2436 91 0 3 chr1 16148612 16148919 -266044745 + AluSx SINE Alu 1 306 -6 1590 187 27 23 chr1 16148919 16149085 -266044579 + AluJb SINE Alu 132 301 -11 602 231 0 0 chr1 16149165 16149282 -266044382 - FLAM_C SINE Alu -15 118 2 2274 111 7 0 chr1 16151285 16151592 -266042072 - AluSx SINE Alu -3 309 1 2091 104 31 0 chr1 16151623 16151912 -266041752 + AluSp SINE Alu 1 298 -15 207 344 144 25 chr1 16152475 16152635 -266041029 - MER5A DNA MER1_type -4 185 7 467 157 157 0 chr1 16157218 16157307 -266036357 - FLAM_A SINE Alu -17 125 23 1587 103 0 19 chr1 16157380 16157594 -266036070 + AluSg/x SINE Alu 91 300 -12 2424 93 0 0 chr1 16158122 16158423 -266035241 + AluSq SINE Alu 1 301 -12 23 0 0 0 chr1 16158859 16158882 -266034782 + AT_rich Low_complexity Low_complexity 1 23 0 494 238 82 0 chr1 16159773 16159895 -266033769 - L2 LINE L2 -1 3271 3140 2206 103 14 0 chr1 16160071 16160361 -266033303 + AluSg SINE Alu 1 294 -16 1580 152 76 4 chr1 16162410 16162673 -266030991 + AluSg SINE Alu 1 282 -28 906 216 129 4 chr1 16162685 16162917 -266030747 + MIR SINE MIR 2 262 0 670 244 171 13 chr1 16162992 16163226 -266030438 - MLT1J1 LTR MaLR -115 331 61 2245 112 14 0 chr1 16163570 16163866 -266029798 + AluSc SINE Alu 1 300 -9 2391 101 0 0 chr1 16164378 16164674 -266028990 - AluSg SINE Alu -14 296 1 924 148 6 41 chr1 16165242 16165411 -266028253 + FRAM SINE Alu 1 163 -13 1134 82 0 0 chr1 16165411 16165546 -266028118 + AluSq/x SINE Alu 1 135 -178 2164 128 0 0 chr1 16165546 16165842 -266027822 + AluSg SINE Alu 1 296 -14 1386 146 29 38 chr1 16165865 16166020 -266027644 - AluSx SINE Alu -18 294 140 2232 105 10 7 chr1 16166020 16166325 -266027339 - AluSq SINE Alu -7 306 1 1386 146 29 38 chr1 16166325 16166408 -266027256 - AluSx SINE Alu -172 140 58 3502 115 22 51 chr1 16166408 16166698 -266026966 - HSMAR2 DNA Mariner -686 616 319 1452 166 64 42 chr1 16166698 16166852 -266026812 - AluJb SINE Alu -23 289 125 2315 103 3 0 chr1 16166852 16167143 -266026521 - AluSp SINE Alu -21 292 1 1452 166 64 42 chr1 16167143 16167271 -266026393 - AluJb SINE Alu -187 125 1 3502 115 22 51 chr1 16167271 16167452 -266026212 - HSMAR2 DNA Mariner -983 319 165 2053 99 88 3 chr1 16167452 16167736 -266025928 - AluSc SINE Alu -1 308 1 3502 115 22 51 chr1 16167736 16167889 -266025775 - HSMAR2 DNA Mariner -1137 165 9 719 220 155 26 chr1 16168198 16168291 -266025373 + L2 LINE L2 2365 2445 -869 2260 114 0 7 chr1 16168291 16168597 -266025067 + AluSq SINE Alu 1 304 -9 719 220 155 26 chr1 16168597 16168767 -266024897 + L2 LINE L2 2445 2662 -652 1024 123 6 6 chr1 16168769 16168948 -266024716 + (CCTA)n Simple_repeat Simple_repeat 1 179 0 1212 106 0 0 chr1 16168960 16169139 -266024525 + (CCTA)n Simple_repeat Simple_repeat 2 180 0 893 242 136 8 chr1 16169139 16169486 -266024178 + L2 LINE L2 2633 3026 -287 29 70 0 0 chr1 16169512 16169569 -266024095 + AT_rich Low_complexity Low_complexity 1 57 0 801 134 25 0 chr1 16169580 16169699 -266023965 - FRAM SINE Alu -33 143 22 758 282 60 39 chr1 16169820 16170074 -266023590 + L2 LINE L2 3024 3286 -27 3574 145 36 0 chr1 16170074 16170632 -266023032 + LTR19B LTR ERV1 3 580 0 758 282 60 39 chr1 16170632 16170661 -266023003 + L2 LINE L2 3286 3313 0 1723 196 0 28 chr1 16170891 16171208 -266022456 - AluJo SINE Alu -4 308 1 2440 137 22 63 chr1 16171362 16171413 -266022251 - MSTA LTR MaLR 0 428 376 2278 114 0 0 chr1 16171413 16171710 -266021954 - AluSx SINE Alu -13 299 3 2440 137 22 63 chr1 16171710 16172052 -266021612 - MSTA LTR MaLR -52 376 53 2253 107 13 0 chr1 16172052 16172360 -266021304 - AluSx SINE Alu 0 312 1 2440 137 22 63 chr1 16172360 16172411 -266021253 - MSTA LTR MaLR -375 53 1 654 108 0 21 chr1 16172474 16172567 -266021097 - AluS SINE Alu -220 93 3 312 329 48 21 chr1 16172701 16172966 -266020698 - MLT1J2 LTR MaLR -86 364 61 1428 163 113 25 chr1 16173011 16173294 -266020370 - AluSg SINE Alu -2 308 1 300 267 114 42 chr1 16173294 16173483 -266020181 - L2 LINE L2 -317 2955 2756 547 136 0 0 chr1 16173488 16173569 -266020095 + AluSg/x SINE Alu 211 291 -21 2140 132 0 7 chr1 16173571 16173881 -266019783 + AluSg SINE Alu 1 308 -2 567 246 0 36 chr1 16174122 16174260 -266019404 - FLAM_A SINE Alu 0 133 1 1581 166 46 14 chr1 16175065 16175348 -266018316 + AluJo SINE Alu 1 292 -20 2024 85 0 8 chr1 16175352 16175610 -266018054 + AluSx SINE Alu 44 299 -13 1032 145 0 13 chr1 16175610 16175805 -266017859 + AluSg/x SINE Alu 132 310 0 45 111 0 0 chr1 16177442 16177641 -266016023 + GC_rich Low_complexity Low_complexity 1 199 0 338 107 18 0 chr1 16177643 16177699 -266015965 + (CGG)n Simple_repeat Simple_repeat 3 59 0 28 105 0 0 chr1 16177798 16177903 -266015761 + GC_rich Low_complexity Low_complexity 1 105 0 29 0 0 0 chr1 16178533 16178562 -266015102 + AT_rich Low_complexity Low_complexity 1 29 0 285 146 0 0 chr1 16178684 16178732 -266014932 + (A)n Simple_repeat Simple_repeat 1 48 0 682 226 20 7 chr1 16179444 16179590 -266014074 + MIR SINE MIR 8 155 -107 2201 106 0 26 chr1 16179605 16179790 -266013874 - AluSx SINE Alu 0 312 142 2406 73 0 7 chr1 16179790 16180090 -266013574 - AluY SINE Alu -12 299 2 2201 106 0 26 chr1 16180090 16180229 -266013435 - AluSx SINE Alu -170 142 1 282 102 0 20 chr1 16180231 16180280 -266013384 - AluSp SINE Alu -170 133 86 2393 63 0 26 chr1 16180296 16180598 -266013066 - AluY SINE Alu 0 311 18 761 243 32 0 chr1 16181117 16181306 -266012358 - L1ME3A LINE L1 -5 6165 5971 2271 112 7 0 chr1 16181511 16181814 -266011850 + AluSx SINE Alu 1 305 -7 2399 91 13 0 chr1 16182108 16182415 -266011249 + AluSp SINE Alu 1 311 -2 2352 99 3 0 chr1 16182895 16183197 -266010467 - AluSq SINE Alu -10 303 1 2021 128 40 0 chr1 16183201 16183498 -266010166 - AluSx SINE Alu -3 309 1 746 195 167 0 chr1 16183540 16183714 -266009950 - MER58A DNA MER1_type -12 212 10 610 262 100 30 chr1 16183889 16184160 -266009504 - L2 LINE L2 0 3313 3024 1956 162 3 10 chr1 16184205 16184513 -266009151 - AluJo SINE Alu -6 306 1 1930 133 3 43 chr1 16184972 16185272 -266008392 + AluJo SINE Alu 5 292 -20 718 188 8 0 chr1 16185746 16185874 -266007790 - FLAM_C SINE Alu -10 133 5 2184 119 10 0 chr1 16185887 16186180 -266007484 - AluSq SINE Alu -17 296 1 2317 105 0 0 chr1 16186184 16186480 -266007184 - AluSx SINE Alu -14 298 3 2290 98 11 0 chr1 16187213 16187531 -266006133 + AluSg SINE Alu 1 321 0 2300 125 0 0 chr1 16187888 16188199 -266005465 - AluSx SINE Alu -1 311 1 310 281 134 80 chr1 16188563 16188656 -266005008 - MIR SINE MIR -14 248 161 2072 97 38 14 chr1 16188656 16188945 -266004719 - AluSq SINE Alu -17 296 1 1861 140 3 43 chr1 16188951 16189251 -266004413 - AluJb SINE Alu -20 292 5 310 281 134 80 chr1 16189251 16189374 -266004290 - MIR SINE MIR -105 157 13 2541 74 0 3 chr1 16189481 16189790 -266003874 - AluSq SINE Alu -3 310 3 519 273 15 0 chr1 16189792 16189924 -266003740 - L2 LINE L2 -13 3300 3167 1022 129 177 38 chr1 16190811 16190997 -266002667 - AluJo SINE Alu -18 294 83 1910 144 26 10 chr1 16191340 16191646 -266002018 - AluJo SINE Alu -1 311 1 2286 122 6 3 chr1 16191679 16191990 -266001674 - AluSx SINE Alu 0 312 1 872 129 0 0 chr1 16192184 16192300 -266001364 + FLAM_C SINE Alu 1 116 -17 182 37 37 0 chr1 16192300 16192327 -266001337 + (TTA)n Simple_repeat Simple_repeat 2 29 0 3745 47 0 43 chr1 16192327 16192813 -266000851 - L1PA6 LINE L1 -14 6140 5676 21 0 0 0 chr1 16192822 16192843 -266000821 + AT_rich Low_complexity Low_complexity 1 21 0 1467 141 0 107 chr1 16192868 16193158 -266000506 + AluJo SINE Alu 50 308 -4 315 146 0 8 chr1 16193379 16193447 -266000217 - Alu SINE Alu 0 302 247 219 245 38 19 chr1 16193607 16193660 -266000004 + MIR3 SINE MIR 110 163 -45 2308 84 10 7 chr1 16193973 16194271 -265999393 + AluSq SINE Alu 1 299 -14 2431 97 0 3 chr1 16194291 16194600 -265999064 + AluSq SINE Alu 1 308 -5 2454 66 0 7 chr1 16194649 16194950 -265998714 + AluY SINE Alu 1 299 -12 2326 116 0 7 chr1 16195557 16195859 -265997805 - AluSx SINE Alu -12 300 1 1926 147 3 32 chr1 16195859 16196171 -265997493 - AluJo SINE Alu -9 303 1 228 288 50 12 chr1 16197356 16197436 -265996228 + L2 LINE L2 1742 1824 -1490 240 143 0 0 chr1 16197436 16197478 -265996186 + (TCCC)n Simple_repeat Simple_repeat 3 44 0 418 181 188 31 chr1 16197592 16197752 -265995912 - L1MC5 LINE L1 -173 7788 7604 297 296 31 0 chr1 16197923 16198021 -265995643 + L2 LINE L2 1979 2079 -1235 398 316 34 0 chr1 16198025 16198142 -265995522 - MER5B DNA MER1_type 0 178 58 1025 276 176 51 chr1 16198248 16198312 -265995352 + L2 LINE L2 2258 2313 -959 2015 148 6 13 chr1 16198312 16198623 -265995041 - AluSx SINE Alu -3 309 1 1025 276 176 51 chr1 16198623 16198951 -265994713 + L2 LINE L2 2313 2598 -674 1862 139 38 0 chr1 16198951 16199238 -265994426 + AluJb SINE Alu 1 298 -14 1025 276 176 51 chr1 16199238 16199534 -265994130 + L2 LINE L2 2598 2855 -417 2418 96 0 3 chr1 16199534 16199848 -265993816 - AluSq SINE Alu 0 313 1 1025 276 176 51 chr1 16199848 16200025 -265993639 + L2 LINE L2 2855 3263 -9 373 211 0 0 chr1 16200159 16200230 -265993434 - MER58A DNA MER1_type -3 221 151 1619 170 35 38 chr1 16200281 16200570 -265993094 + AluJb SINE Alu 1 288 -24 488 231 9 0 chr1 16200571 16200679 -265992985 - MER58A DNA MER1_type 0 145 37 2270 118 0 0 chr1 16201030 16201326 -265992338 - AluSq SINE Alu -17 296 1 2459 77 10 0 chr1 16201358 16201656 -265992008 - AluSc SINE Alu -8 301 1 724 173 0 31 chr1 16201736 16201863 -265991801 - FLAM_C SINE Alu -9 124 2 251 189 0 0 chr1 16201921 16201972 -265991692 + MIR SINE MIR 42 92 -116 990 265 42 0 chr1 16202035 16202273 -265991391 - MIR SINE MIR -8 254 7 371 64 0 0 chr1 16202613 16202660 -265991004 + Charlie5 DNA MER1_type 163 209 -2403 347 120 0 0 chr1 16202617 16202667 -265990997 - MER3 DNA MER1_type -119 90 41 * 445 266 22 14 chr1 16202681 16202820 -265990844 - MIR SINE MIR -118 144 5 441 267 24 13 chr1 16202904 16203082 -265990582 + L1M4 LINE L1 4419 4598 -1548 2298 54 4 11 chr1 16203085 16203363 -265990301 + AluY SINE Alu 1 276 -35 1663 117 0 4 chr1 16205277 16205508 -265988156 + AluSg1 SINE Alu 1 230 -79 1206 163 80 73 chr1 16205647 16205947 -265987717 + AluJo SINE Alu 1 302 -10 2054 126 0 0 chr1 16208383 16208677 -265984987 + AluSq SINE Alu 1 294 -19 2087 100 3 32 chr1 16209488 16209799 -265983865 + AluSp SINE Alu 1 302 -11 2243 70 0 54 chr1 16211349 16211664 -265982000 - AluY SINE Alu -13 298 1 681 130 10 0 chr1 16211664 16211764 -265981900 - AluY SINE Alu -167 144 44 22 35 0 0 chr1 16211811 16211840 -265981824 + AT_rich Low_complexity Low_complexity 1 29 0 2137 110 7 0 chr1 16212118 16212419 -265981245 - AluSx SINE Alu -9 303 1 2334 80 0 16 chr1 16213533 16213847 -265979817 - AluY SINE Alu -2 309 1 2148 112 7 0 chr1 16213861 16214166 -265979498 - AluSc SINE Alu -2 307 1 1646 164 3 24 chr1 16214174 16214466 -265979198 - AluSx SINE Alu -23 289 4 2789 7 0 0 chr1 16214483 16214791 -265978873 - AluYa5 SINE Alu -3 308 1 1867 122 7 7 chr1 16214814 16215101 -265978563 - AluSx SINE Alu -25 287 1 1761 109 41 17 chr1 16216889 16217183 -265976481 - AluSg SINE Alu -7 303 3 1850 50 50 0 chr1 16217193 16217431 -265976233 - AluY SINE Alu -2 309 60 1108 39 0 0 chr1 16217431 16217558 -265976106 - AluY SINE Alu -176 135 9 1844 148 0 0 chr1 16217566 16217856 -265975808 - AluSc SINE Alu -19 290 1 516 231 0 0 chr1 16218119 16218227 -265975437 - FLAM_A SINE Alu -15 127 20 1087 70 0 0 chr1 16218242 16218384 -265975280 - AluY SINE Alu -1 310 169 1134 274 16 5 chr1 16218427 16218803 -265974861 - L1 LINE L1 -2541 3605 3226 31 0 0 0 chr1 16218905 16218936 -265974728 + AT_rich Low_complexity Low_complexity 1 31 0 237 197 49 33 chr1 16221272 16221333 -265972331 + L1MC3 LINE L1 7496 7557 -228 283 200 31 15 chr1 16221398 16221463 -265972201 + L1MD3 LINE L1 7920 7985 -10 1032 226 81 0 chr1 16221464 16221774 -265971890 + L1 LINE L1 3510 3844 -2302 651 144 29 0 chr1 16221874 16221978 -265971686 - AluJb SINE Alu -121 191 85 2057 114 0 10 chr1 16223310 16223607 -265970057 + AluSg SINE Alu 1 294 -16 188 188 16 0 chr1 16224766 16224830 -265968834 + G-rich Low_complexity Low_complexity 5 69 0 182 170 0 21 chr1 16225201 16225248 -265968416 + G-rich Low_complexity Low_complexity 2 47 0 198 118 0 0 chr1 16225380 16225414 -265968250 + (T)n Simple_repeat Simple_repeat 1 34 0 840 193 32 11 chr1 16225426 16225613 -265968051 - AluSp SINE Alu -122 191 1 2409 63 0 22 chr1 16225641 16225956 -265967708 + AluY SINE Alu 1 308 -3 456 213 73 22 chr1 16226041 16226177 -265967487 - MIR3 SINE MIR -48 160 18 2135 74 46 0 chr1 16226429 16226714 -265966950 + AluSg SINE Alu 1 298 -12 345 186 5 0 chr1 16226821 16226904 -265966760 - Alu SINE Alu -251 51 1 2047 104 27 10 chr1 16226904 16227203 -265966461 - AluSx SINE Alu -8 304 1 338 261 0 0 chr1 16227359 16227428 -265966236 + FRAM/FAM SINE Alu 1 60 -106 1056 155 96 161 chr1 16227469 16227792 -265965872 + AluSx SINE Alu 1 302 0 417 306 120 29 chr1 16227818 16227910 -265965754 + L1MC/D LINE L1 4979 5061 -1085 2046 142 0 3 chr1 16227910 16228219 -265965445 + AluSx SINE Alu 1 308 -4 417 306 120 29 chr1 16228219 16228335 -265965329 + L1MC/D LINE L1 5061 5206 -940 371 281 107 18 chr1 16228391 16228413 -265965251 + L1MC/D LINE L1 5265 5284 -908 2418 79 3 0 chr1 16228413 16228718 -265964946 + AluSp SINE Alu 1 306 -7 371 281 107 18 chr1 16228718 16228922 -265964742 + L1MC/D LINE L1 5284 5503 -689 297 355 138 0 chr1 16228924 16229155 -265964509 + L1MC/D LINE L1 5536 5798 -2010 1532 120 20 149 chr1 16229225 16229414 -265964250 - AluJo SINE Alu -3 299 172 1967 110 0 0 chr1 16229414 16229677 -265963987 - AluSx SINE Alu -49 263 1 1532 120 20 149 chr1 16229677 16229829 -265963835 - AluJo SINE Alu -130 172 2 219 167 0 0 chr1 16229834 16229876 -265963788 + T-rich Low_complexity Low_complexity 1 42 0 2265 68 0 14 chr1 16230190 16230515 -265963149 - AluY SINE Alu 0 321 1 2133 114 3 3 chr1 16230518 16230816 -265962848 - AluSg SINE Alu -12 298 1 207 206 44 59 chr1 16230831 16230899 -265962765 + MIR3 SINE MIR 140 206 -2 189 0 0 0 chr1 16230925 16230946 -265962718 + (A)n Simple_repeat Simple_repeat 1 21 0 716 157 0 0 chr1 16231832 16231934 -265961730 + AluJb SINE Alu 189 290 -22 2259 102 3 6 chr1 16231936 16232249 -265961415 + AluSx SINE Alu 1 312 0 1647 172 11 0 chr1 16233547 16233832 -265959832 + AluJo SINE Alu 1 288 -24 861 219 22 0 chr1 16233838 16234016 -265959648 + FRAM SINE Alu 1 176 0 2189 115 3 6 chr1 16235744 16236056 -265957608 + AluSx SINE Alu 1 311 -1 215 31 31 0 chr1 16236705 16236737 -265956927 + (TA)n Simple_repeat Simple_repeat 1 33 0 2190 92 3 3 chr1 16238704 16239020 -265954644 - AluSx SINE Alu 0 316 1 2115 104 0 17 chr1 16240047 16240346 -265953318 + AluJo SINE Alu 14 307 -5 2395 80 0 0 chr1 16240779 16241081 -265952583 + AluSc SINE Alu 1 302 -7 1420 217 95 9 chr1 16242295 16242631 -265951033 - MLT1A1 LTR MaLR 0 365 1 306 0 0 0 chr1 16246623 16246657 -265947007 + (CGGGG)n Simple_repeat Simple_repeat 5 38 0 2277 90 0 3 chr1 16246735 16247036 -265946628 + AluSx SINE Alu 1 300 -12 493 231 118 35 chr1 16252207 16252410 -265941254 - MIR SINE MIR -22 240 21 2208 121 0 3 chr1 16253863 16254176 -265939488 + AluSx SINE Alu 1 312 0 257 180 0 20 chr1 16254265 16254315 -265939349 - MIR SINE MIR -131 131 83 285 118 0 0 chr1 16255358 16255409 -265938255 + (CA)n Simple_repeat Simple_repeat 2 52 0 482 255 186 16 chr1 16255461 16255649 -265938015 - MIR SINE MIR -14 248 29 465 331 62 0 chr1 16256299 16256477 -265937187 - MIR SINE MIR -57 205 17 1963 161 8 28 chr1 16256585 16256855 -265936809 - MLT1B LTR MaLR -8 382 121 2233 117 0 0 chr1 16256855 16257154 -265936510 - AluSx SINE Alu -13 299 1 1963 161 8 28 chr1 16257154 16257273 -265936391 - MLT1B LTR MaLR -269 121 1 2073 105 18 0 chr1 16257273 16257559 -265936105 - AluSg SINE Alu -19 291 1 2282 95 0 3 chr1 16258499 16258803 -265934861 - AluSg SINE Alu -7 303 1 252 136 0 85 chr1 16258999 16259058 -265934606 + (TCCCC)n Simple_repeat Simple_repeat 3 56 0 478 247 148 25 chr1 16260019 16260181 -265933483 - MIR SINE MIR -34 228 47 2158 89 0 35 chr1 16260248 16260561 -265933103 + AluSx SINE Alu 1 302 -10 428 347 10 20 chr1 16261321 16261520 -265932144 - L2 LINE L2 -227 3045 2849 1200 172 15 0 chr1 16261611 16261814 -265931850 - AluJ SINE Alu 0 312 107 1829 166 16 0 chr1 16261815 16262122 -265931542 + AluSx SINE Alu 1 312 0 414 100 0 0 chr1 16262122 16262182 -265931482 + (GA)n Simple_repeat Simple_repeat 2 61 0 2244 99 20 3 chr1 16262187 16262490 -265931174 + AluSq SINE Alu 1 308 -5 822 108 0 0 chr1 16262490 16262601 -265931063 - AluJ SINE Alu -201 111 1 868 98 76 0 chr1 16262611 16262743 -265930921 - AluSg/x SINE Alu -5 305 164 1085 123 0 7 chr1 16262778 16262932 -265930732 + AluSq SINE Alu 1 153 -160 537 98 24 0 chr1 16262932 16263014 -265930650 + Alu SINE Alu 223 306 -3 361 297 103 11 chr1 16263014 16263189 -265930475 - L2 LINE L2 -670 2644 2454 1012 167 0 0 chr1 16263721 16263883 -265929781 + AluSg/x SINE Alu 136 297 -15 2182 122 0 3 chr1 16264587 16264899 -265928765 + AluSx SINE Alu 1 311 -1 277 276 82 20 chr1 16265305 16265403 -265928261 + MIR SINE MIR 17 121 -87 786 276 86 16 chr1 16265408 16265651 -265928013 - MIR SINE MIR 0 262 3 247 306 35 0 chr1 16266999 16267084 -265926580 - L2 LINE L2 0 3272 3185 2342 87 3 0 chr1 16267125 16267435 -265926229 + AluSx SINE Alu 1 311 -1 587 240 67 17 chr1 16267484 16267663 -265926001 - MLT1E LTR MaLR 0 593 406 364 234 133 8 chr1 16267797 16267925 -265925739 - MLT1E LTR MaLR -448 145 2 373 289 40 13 chr1 16267925 16268074 -265925590 - L2 LINE L2 -263 3050 2898 1565 102 0 0 chr1 16268082 16268298 -265925366 + AluSg1 SINE Alu 1 216 -93 942 112 0 0 chr1 16268313 16268447 -265925217 + AluSg/x SINE Alu 170 303 -6 329 340 0 0 chr1 16268514 16268611 -265925053 - L2 LINE L2 -558 2756 2660 266 340 89 29 chr1 16268630 16268945 -265924719 - L2 LINE L2 -339 2975 2642 1836 145 0 17 chr1 16268949 16269086 -265924578 + AluJb SINE Alu 1 139 -174 2166 70 0 0 chr1 16269086 16269356 -265924308 + AluY SINE Alu 35 304 -7 1836 145 0 17 chr1 16269356 16269536 -265924128 + AluJb SINE Alu 139 313 0 2040 111 0 0 chr1 16269628 16269907 -265923757 - AluSx SINE Alu -33 279 1 1158 99 12 0 chr1 16270724 16270885 -265922779 - AluSg/x SINE Alu -8 302 140 2297 100 0 0 chr1 16270892 16271191 -265922473 - AluSq SINE Alu -14 299 1 2438 70 0 16 chr1 16271280 16271625 -265922039 + AluY SINE Alu 1 340 0 318 188 29 0 chr1 16271631 16271700 -265921964 + Alu SINE Alu 231 301 0 327 172 65 11 chr1 16271734 16271827 -265921837 - MLT1K LTR MaLR -103 485 388 362 241 118 52 chr1 16272154 16272384 -265921280 - MIR3 SINE MIR -19 243 5 479 302 124 48 chr1 16272558 16272929 -265920735 + L2 LINE L2 2910 3308 -5 278 313 93 63 chr1 16273854 16274030 -265919634 + MIR SINE MIR 35 213 -49 440 274 114 17 chr1 16274688 16274863 -265918801 - MIR SINE MIR -8 254 63 299 165 66 44 chr1 16275036 16275127 -265918537 + C-rich Low_complexity Low_complexity 2 94 0 25 0 0 0 chr1 16275182 16275207 -265918457 + GC_rich Low_complexity Low_complexity 1 25 0 205 286 0 0 chr1 16275296 16275359 -265918305 + G-rich Low_complexity Low_complexity 81 143 0 22 0 0 0 chr1 16275401 16275423 -265918241 + GC_rich Low_complexity Low_complexity 1 22 0 291 305 121 0 chr1 16276227 16276368 -265917296 - MIR SINE MIR -70 192 35 2298 70 13 0 chr1 16276518 16276819 -265916845 + AluSx SINE Alu 1 305 -7 2314 101 0 0 chr1 16276824 16277132 -265916532 + AluSx SINE Alu 1 308 -4 327 322 39 50 chr1 16277914 16278094 -265915570 + MIR SINE MIR 82 259 -3 1892 103 28 21 chr1 16278664 16278833 -265914831 - AluSx SINE Alu -11 301 128 2155 122 0 0 chr1 16278833 16279137 -265914527 - AluSg1 SINE Alu -5 304 1 1892 103 28 21 chr1 16279137 16279257 -265914407 - AluSx SINE Alu -184 128 10 2265 92 3 3 chr1 16279642 16279945 -265913719 - AluSq SINE Alu -10 303 1 464 279 96 21 chr1 16280158 16280351 -265913313 + MIR SINE MIR 3 209 -53 329 284 53 0 chr1 16282015 16282110 -265911554 - MER5A DNA MER1_type -24 165 66 874 158 72 0 chr1 16282110 16282151 -265911513 - AluJb SINE Alu -18 294 257 198 0 0 0 chr1 16282151 16282173 -265911491 + (CAGTG)n Simple_repeat Simple_repeat 1 22 0 874 158 72 0 chr1 16282173 16282283 -265911381 - AluJb SINE Alu -55 257 132 258 32 0 0 chr1 16282283 16282314 -265911350 + (TG)n Simple_repeat Simple_repeat 2 32 0 2198 98 0 0 chr1 16282317 16282603 -265911061 - AluSx SINE Alu -26 286 1 2124 109 7 0 chr1 16282606 16282899 -265910765 - AluSp SINE Alu -18 295 1 1853 156 0 10 chr1 16282899 16283199 -265910465 - AluJo SINE Alu -14 298 1 319 239 0 0 chr1 16283200 16283267 -265910397 - MIR SINE MIR -96 112 46 245 316 72 36 chr1 16283733 16283872 -265909792 - L3b LINE CR1 -98 1485 1342 1948 138 7 3 chr1 16283885 16284189 -265909475 - AluSx SINE Alu -7 305 1 227 314 23 0 chr1 16284366 16284452 -265909212 + MIR SINE MIR 67 154 -108 2322 106 0 0 chr1 16285201 16285512 -265908152 + AluSx SINE Alu 1 311 -1 343 177 0 6 chr1 16285528 16285597 -265908067 + Alu SINE Alu 1 55 -247 2240 89 7 0 chr1 16285637 16285939 -265907725 - AluSc SINE Alu -5 304 1 2073 144 0 6 chr1 16285940 16286253 -265907411 - AluSx SINE Alu -1 311 1 545 249 53 62 chr1 16286605 16286745 -265906919 - MIR SINE MIR -29 233 93 1468 209 127 45 chr1 16286745 16286928 -265906736 - MLT1D LTR MaLR -3 502 335 2245 98 0 22 chr1 16286928 16287244 -265906420 - AluSg SINE Alu -1 309 1 2066 141 3 0 chr1 16287246 16287552 -265906112 - AluSx SINE Alu -5 307 1 1468 209 127 45 chr1 16287552 16287829 -265905835 - MLT1D LTR MaLR -170 335 1 545 249 53 62 chr1 16287829 16287913 -265905751 - MIR SINE MIR -169 93 11 258 317 246 7 chr1 16288061 16288203 -265905461 + MER5A DNA MER1_type 14 189 0 837 136 0 0 chr1 16288678 16288796 -265904868 + FLAM_C SINE Alu 1 118 -25 21 36 0 0 chr1 16288808 16288836 -265904828 + AT_rich Low_complexity Low_complexity 1 28 0 1413 113 0 5 chr1 16288887 16289091 -265904573 - AluSq SINE Alu -109 204 2 259 115 0 49 chr1 16289110 16289130 -265904534 + L1MB1 LINE L1 6110 6129 -39 1867 106 84 0 chr1 16289130 16289403 -265904261 + AluSx SINE Alu 1 296 -16 2311 86 3 3 chr1 16289405 16289707 -265903957 + AluSp SINE Alu 3 304 -9 259 115 0 49 chr1 16289707 16289744 -265903920 + L1MB1 LINE L1 6130 6167 -1 1833 141 33 7 chr1 16289867 16290171 -265903493 + AluSx SINE Alu 1 312 0 1225 167 100 154 chr1 16290907 16290943 -265902721 - MER21A LTR ERV1 -373 554 518 2566 39 0 13 chr1 16290943 16291253 -265902411 + AluY SINE Alu 1 306 -5 2233 114 0 0 chr1 16291262 16291561 -265902103 + AluSg SINE Alu 2 300 -10 1225 167 100 154 chr1 16291561 16292128 -265901536 - MER21A LTR ERV1 -417 510 16 631 123 36 72 chr1 16292142 16292280 -265901384 + FLAM_C SINE Alu 1 133 0 195 326 106 64 chr1 16292306 16292447 -265901217 - MIR SINE MIR -98 164 18 236 255 0 98 chr1 16292464 16292566 -265901098 - L2 LINE L2 -49 3223 3132 2248 88 3 34 chr1 16292589 16292909 -265900755 + AluSg SINE Alu 1 310 0 191 330 50 20 chr1 16293329 16293429 -265900235 - L2 LINE L2 -33 3239 3137 618 266 102 71 chr1 16293478 16293579 -265900085 - MLT1K LTR MaLR -34 554 458 2218 90 10 0 chr1 16293579 16293879 -265899785 - AluSq SINE Alu -10 303 1 618 266 102 71 chr1 16293879 16294141 -265899523 - MLT1K LTR MaLR -130 458 180 867 155 7 0 chr1 16294289 16294431 -265899233 + FLAM_C SINE Alu 1 143 0 268 325 65 30 chr1 16294466 16294635 -265899029 - L2 LINE L2 -201 3071 2897 2271 109 0 3 chr1 16294643 16294947 -265898717 - AluSp SINE Alu -9 304 2 2160 95 7 3 chr1 16294948 16295242 -265898422 - AluSx SINE Alu -17 295 1 2112 125 6 10 chr1 16295298 16295609 -265898055 - AluSx SINE Alu -2 310 1 506 198 0 138 chr1 16295805 16295880 -265897784 + MER45A DNA AcHobo 35 119 -1462 1541 164 28 54 chr1 16295880 16296197 -265897467 - AluJo SINE Alu -3 309 1 506 198 0 138 chr1 16296197 16296210 -265897454 + MER45A DNA AcHobo 119 132 -1449 1920 134 17 3 chr1 16296210 16296501 -265897163 - AluSx SINE Alu -17 295 1 506 198 0 138 chr1 16296501 16296578 -265897086 + MER45A DNA AcHobo 132 178 0 1808 150 21 7 chr1 16297093 16297379 -265896285 + AluJb SINE Alu 1 290 -22 1179 133 0 0 chr1 16297379 16297545 -265896119 + AluJb SINE Alu 134 299 -13 1181 140 0 0 chr1 16297653 16297824 -265895840 + AluJb SINE Alu 129 299 -13 1679 140 42 3 chr1 16298208 16298494 -265895170 - AluSg1 SINE Alu -12 297 1 456 213 73 22 chr1 16298746 16298882 -265894782 + MIR3 SINE MIR 18 160 -48 2409 63 0 22 chr1 16298967 16299282 -265894382 - AluY SINE Alu -3 308 1 1913 137 23 0 chr1 16299310 16299610 -265894054 + AluSx SINE Alu 1 307 -5 2192 93 17 3 chr1 16300458 16300749 -265892915 + AluSq SINE Alu 1 295 -18 2284 92 0 0 chr1 16300759 16301052 -265892612 + AluSx SINE Alu 1 293 -19 1849 137 35 0 chr1 16302257 16302541 -265891123 + AluSx SINE Alu 2 295 -17 1734 146 30 0 chr1 16302558 16302825 -265890839 + AluJb SINE Alu 24 298 -14 231 328 118 8 chr1 16302918 16303037 -265890627 + MIR3 SINE MIR 5 136 -72 2275 108 0 0 chr1 16303063 16303370 -265890294 + AluSg SINE Alu 1 307 -3 225 0 0 0 chr1 16303370 16303395 -265890269 + (TA)n Simple_repeat Simple_repeat 1 25 0 2222 104 0 7 chr1 16303415 16303714 -265889950 + AluSc SINE Alu 1 297 -12 1914 144 0 0 chr1 16303714 16304019 -265889645 + AluSq SINE Alu 1 305 0 835 129 0 0 chr1 16304019 16304135 -265889529 - AluJo/FLAM SINE Alu -196 116 1 606 254 133 17 chr1 16304281 16304521 -265889143 - MER90 LTR ERV1 -1 613 346 2273 100 3 0 chr1 16304643 16304952 -265888712 + AluSp SINE Alu 1 310 -3 328 318 23 0 chr1 16304962 16304978 -265888686 + L1MCa LINE L1 1978 1992 -4434 195 222 0 0 chr1 16304978 16305023 -265888641 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 * 332 360 0 0 chr1 16304987 16305076 -265888588 - L1MC4 LINE L1 -1340 6702 6614 * 350 289 48 0 chr1 16305030 16305113 -265888551 + L1MC4 LINE L1 6616 6702 -1340 430 305 13 63 chr1 16305427 16306332 -265887332 + L1PA16 LINE L1 5639 5925 -241 1911 152 28 33 chr1 16305465 16305622 -265888042 + L1MB3 LINE L1 5670 5826 -357 2335 86 0 26 chr1 16305622 16305926 -265887738 + AluSx SINE Alu 3 298 -14 2282 123 0 0 chr1 16305926 16306227 -265887437 + AluSg SINE Alu 1 301 -9 1911 152 28 33 chr1 16306227 16306463 -265887201 + L1MB3 LINE L1 5824 6062 -121 1680 138 127 0 chr1 16306463 16306731 -265886933 + AluJb SINE Alu 1 302 -10 1321 129 4 71 chr1 16306739 16306810 -265886854 + AluSg/x SINE Alu 75 149 -163 2389 57 0 0 chr1 16306810 16307113 -265886551 + AluY SINE Alu 1 303 0 1321 129 4 71 chr1 16307113 16307265 -265886399 + AluSg/x SINE Alu 149 284 -28 627 143 87 0 chr1 16307265 16307391 -265886273 + L1MB3 LINE L1 6044 6180 -3 2460 72 0 57 chr1 16307790 16308121 -265885543 + AluSx SINE Alu 1 312 0 1092 160 0 66 chr1 16308770 16308827 -265884837 + AluSg/x SINE Alu 85 144 -158 2538 65 13 7 chr1 16308827 16309137 -265884527 + AluSp SINE Alu 1 312 -1 1092 160 0 66 chr1 16309137 16309311 -265884353 + AluSg/x SINE Alu 144 302 0 243 268 116 14 chr1 16309773 16309911 -265883753 - MIR SINE MIR -31 231 80 1914 158 3 14 chr1 16310074 16310371 -265883293 - AluJb SINE Alu -18 294 1 927 135 0 0 chr1 16310391 16310524 -265883140 - FLAM_C SINE Alu 0 133 1 786 158 71 63 chr1 16310702 16310955 -265882709 + LTR37A LTR ERV1 1 294 -132 2342 94 0 17 chr1 16310955 16311252 -265882412 - AluSx SINE Alu -20 292 1 786 158 71 63 chr1 16311252 16311374 -265882290 + LTR37A LTR ERV1 294 414 -12 209 195 24 0 chr1 16311524 16311565 -265882099 + G-rich Low_complexity Low_complexity 2 43 0 851 152 8 0 chr1 16311612 16311744 -265881920 + FLAM_C SINE Alu 1 133 0 223 305 53 11 chr1 16312048 16312143 -265881521 - MIR SINE MIR -59 203 105 808 198 0 6 chr1 16312315 16312477 -265881187 + L1MD3 LINE L1 7725 7885 -110 2505 67 0 0 chr1 16312477 16312777 -265880887 - AluY SINE Alu -11 300 1 2395 84 3 3 chr1 16312778 16313075 -265880589 - AluSc SINE Alu -12 297 1 231 250 134 36 chr1 16313531 16313643 -265880021 + MIR3 SINE MIR 8 130 -78 1142 68 0 0 chr1 16313689 16313822 -265879842 + AluSq/x SINE Alu 1 133 -179 2515 66 7 0 chr1 16313826 16314131 -265879533 + AluSp SINE Alu 1 307 -6 2449 85 3 0 chr1 16314135 16314441 -265879223 + AluSp SINE Alu 1 307 -6 231 114 0 0 chr1 16314875 16314910 -265878754 + (TTCA)n Simple_repeat Simple_repeat 2 36 0 189 262 48 36 chr1 16314910 16314994 -265878670 - L2 LINE L2 -9 3304 3220 214 290 43 11 chr1 16315034 16315127 -265878537 - L2 LINE L2 -221 3051 2956 250 216 147 35 chr1 16315345 16315461 -265878203 - MIR3 SINE MIR -47 161 33 432 242 270 23 chr1 16316264 16316656 -265877008 - L2 LINE L2 -2007 1307 819 258 258 16 0 chr1 16316698 16316760 -265876904 + L2 LINE L2 3210 3272 0 2265 117 3 0 chr1 16316819 16317117 -265876547 - AluSx SINE Alu -12 300 2 318 131 16 0 chr1 16317138 16317199 -265876465 - L1MB7 LINE L1 0 6184 6123 1919 148 0 33 chr1 16317200 16317504 -265876160 - AluJb SINE Alu -18 294 1 1786 190 68 29 chr1 16317549 16317991 -265875673 + LTR2B LTR ERV1 32 490 0 2131 98 7 36 chr1 16318493 16318798 -265874866 - AluSq SINE Alu -17 296 1 503 289 170 0 chr1 16318830 16318989 -265874675 - MER5A DNA MER1_type 0 189 4 1838 156 28 3 chr1 16318995 16319283 -265874381 + AluJo SINE Alu 1 295 -17 2083 110 28 7 chr1 16319391 16319681 -265873983 - AluSx SINE Alu -14 298 3 389 217 217 39 chr1 16319731 16319860 -265873804 + L2 LINE L2 3161 3312 -1 2196 121 10 0 chr1 16319915 16320205 -265873459 - AluSx SINE Alu -19 293 1 343 182 192 30 chr1 16320230 16320329 -265873335 + FLAM_C SINE Alu 1 115 -18 2435 78 0 13 chr1 16320336 16320643 -265873021 - AluY SINE Alu -8 303 1 1215 153 213 24 chr1 16320698 16320968 -265872696 - AluSx SINE Alu 0 312 1 192 77 0 0 chr1 16321268 16321294 -265872370 + (TCC)n Simple_repeat Simple_repeat 2 27 0 898 96 80 0 chr1 16321390 16321515 -265872149 - AluSq/x SINE Alu -177 135 1 1854 160 0 0 chr1 16321589 16321896 -265871768 + AluJb SINE Alu 1 312 0 951 104 0 0 chr1 16321924 16322049 -265871615 - AluSc SINE Alu -15 294 170 2056 136 0 7 chr1 16322183 16322484 -265871180 - AluSx SINE Alu -13 299 1 2435 106 0 0 chr1 16322996 16323308 -265870356 - AluSx SINE Alu 0 312 1 1495 174 98 21 chr1 16323358 16323645 -265870019 - AluJo SINE Alu -3 309 1 261 271 131 62 chr1 16323659 16323804 -265869860 + MIR SINE MIR 9 173 -89 1981 162 0 0 chr1 16324213 16324509 -265869155 + AluJb SINE Alu 1 296 -16 349 289 11 11 chr1 16324510 16324600 -265869064 + L3 LINE CR1 1479 1568 -9 2544 64 0 0 chr1 16324655 16324953 -265868711 + AluY SINE Alu 1 298 -13 257 327 39 32 chr1 16325234 16325390 -265868274 - L2 LINE L2 -276 3037 2881 2549 60 0 10 chr1 16325470 16325768 -265867896 - AluSx SINE Alu -17 295 1 277 254 182 27 chr1 16326049 16326159 -265867505 - MIR SINE MIR -62 146 20 289 170 0 0 chr1 16326160 16326213 -265867451 - Alu SINE Alu -4 296 244 453 73 0 0 chr1 16326213 16326268 -265867396 + AluJo/FRAM SINE Alu 211 265 -47 1069 191 36 27 chr1 16326391 16326611 -265867053 - AluJo SINE Alu -6 306 85 342 216 24 8 chr1 16326643 16326749 -265866915 - AluSp/q SINE Alu -57 246 186 934 160 65 45 chr1 16326751 16326951 -265866713 + AluJo SINE Alu 104 307 -5 2151 96 7 7 chr1 16326975 16327266 -265866398 + AluSc SINE Alu 1 291 -18 492 176 38 114 chr1 16327301 16327417 -265866247 + MER58 DNA MER1_type 1 95 -246 2077 123 7 42 chr1 16327417 16327557 -265866107 + AluSx SINE Alu 6 149 -163 2597 57 0 0 chr1 16327557 16327856 -265865808 + AluY SINE Alu 1 299 -12 2077 123 7 42 chr1 16327856 16328023 -265865641 + AluSx SINE Alu 149 302 -10 492 176 38 114 chr1 16328023 16328116 -265865548 + MER58 DNA MER1_type 95 194 -147 2281 101 3 0 chr1 16328117 16328415 -265865249 - AluSg SINE Alu -9 301 3 2143 133 0 3 chr1 16328417 16328710 -265864954 - AluSg SINE Alu -18 292 1 2230 93 0 0 chr1 16328711 16328989 -265864675 - AluSx SINE Alu 0 312 35 307 133 33 0 chr1 16329037 16329097 -265864567 + AluSp/q SINE Alu 242 303 0 321 304 179 0 chr1 16329140 16329252 -265864412 - MIR SINE MIR -61 147 16 2274 79 7 20 chr1 16329720 16330023 -265863641 - AluSc SINE Alu -10 299 1 2401 87 0 19 chr1 16330675 16330984 -265862680 - AluSq SINE Alu -10 303 1 2088 122 7 10 chr1 16331569 16331864 -265861800 + AluSx SINE Alu 1 294 -18 1757 168 24 7 chr1 16331963 16332260 -265861404 + AluJo SINE Alu 5 306 -6 586 145 0 0 chr1 16332359 16332442 -265861222 - AluJ/FLAM SINE Alu -228 84 2 216 308 169 41 chr1 16332496 16332668 -265860996 + L2 LINE L2 1435 1628 -1686 1282 139 42 28 chr1 16332680 16332895 -265860769 + AluJo SINE Alu 85 302 -10 1532 140 0 0 chr1 16333003 16333217 -265860447 + AluSx SINE Alu 1 214 -98 2402 91 3 0 chr1 16333220 16333516 -265860148 + AluSc SINE Alu 5 301 -8 646 129 0 20 chr1 16333516 16333617 -265860047 + AluSx SINE Alu 204 302 -8 441 162 0 0 chr1 16333769 16333837 -265859827 - AluSg/x SINE Alu -37 275 208 2108 137 0 10 chr1 16334059 16334366 -265859298 + AluSx SINE Alu 1 304 -8 2332 109 3 0 chr1 16334371 16334675 -265858989 + AluSp SINE Alu 1 305 -8 1249 145 5 5 chr1 16334793 16334979 -265858685 + AluJb SINE Alu 1 186 -126 689 121 0 0 chr1 16335179 16335278 -265858386 - AluSx SINE Alu -8 302 204 2402 91 3 0 chr1 16335278 16335574 -265858090 - AluSc SINE Alu -8 301 5 1532 140 0 0 chr1 16335577 16335791 -265857873 - AluSx SINE Alu -98 214 1 313 128 0 0 chr1 16335853 16335900 -265857764 + AluS SINE Alu 38 84 -219 1757 168 24 7 chr1 16335999 16336296 -265857368 - AluJo SINE Alu -6 306 5 2180 104 10 0 chr1 16336395 16336684 -265856980 - AluSg SINE Alu -18 292 1 2387 93 7 0 chr1 16336697 16336997 -265856667 - AluSp SINE Alu -11 302 1 906 125 7 15 chr1 16336997 16337133 -265856531 - AluSq/x SINE Alu -177 135 1 1472 219 88 77 chr1 16337141 16337675 -265855989 + L2 LINE L2 2002 2541 -773 1638 107 119 11 chr1 16337675 16337936 -265855728 + AluSg SINE Alu 5 293 -17 815 134 112 15 chr1 16337936 16338094 -265855570 + AluSc SINE Alu 132 302 0 2382 97 10 0 chr1 16338096 16338405 -265855259 + AluSx SINE Alu 1 312 0 1302 125 0 0 chr1 16338954 16339130 -265854534 + AluSg/x SINE Alu 116 291 -19 299 252 69 46 chr1 16339177 16339249 -265854415 + L2 LINE L2 2587 2665 -649 2191 74 3 14 chr1 16339249 16339534 -265854130 - AluY SINE Alu -8 303 22 299 252 69 46 chr1 16339534 16339592 -265854072 + L2 LINE L2 2665 2720 -594 914 136 71 26 chr1 16339693 16339848 -265853816 - AluJb SINE Alu -17 295 134 1698 180 14 0 chr1 16339849 16340143 -265853521 - AluJo SINE Alu -14 298 1 939 269 72 67 chr1 16340148 16340321 -265853343 + L2 LINE L2 2865 3036 -277 744 250 12 0 chr1 16340321 16340481 -265853183 + FRAM SINE Alu 4 165 -1 939 269 72 67 chr1 16340481 16340754 -265852910 + L2 LINE L2 3036 3313 0 2003 115 30 7 chr1 16340958 16341253 -265852411 - AluSg SINE Alu -8 302 1 2557 51 3 16 chr1 16341617 16341929 -265851735 - AluY SINE Alu -3 308 1 2310 77 17 3 chr1 16342418 16342717 -265850947 - AluSp SINE Alu -10 303 1 2170 44 4 25 chr1 16342825 16343099 -265850565 - AluY SINE Alu -43 268 1 565 167 139 0 chr1 16343386 16343494 -265850170 + FLAM_C SINE Alu 1 123 -10 1679 92 141 4 chr1 16343511 16343773 -265849891 + AluSc SINE Alu 2 299 0 755 187 107 7 chr1 16343781 16343931 -265849733 + FRAM SINE Alu 1 165 -1 21 82 0 0 chr1 16345129 16345178 -265848486 + GC_rich Low_complexity Low_complexity 1 49 0 2321 71 17 3 chr1 16346687 16346983 -265846681 - AluSq SINE Alu -13 300 1 648 171 9 0 chr1 16347000 16347111 -265846553 - FLAM_C SINE Alu -30 113 2 1440 159 101 8 chr1 16348172 16348451 -265845213 - AluJo SINE Alu 0 303 1 2024 118 10 0 chr1 16348635 16348932 -265844732 + AluSq SINE Alu 1 300 -13 743 201 81 0 chr1 16349095 16349244 -265844420 + FRAM SINE Alu 1 161 -5 1953 139 4 0 chr1 16349394 16349674 -265843990 - AluSp SINE Alu -7 306 26 6206 129 70 19 chr1 16349774 16350851 -265842813 + Tigger4(Zombi) DNA MER2_type 579 1710 -1021 1678 146 29 0 chr1 16350879 16351187 -265842477 + Tigger4(Zombi) DNA MER2_type 1853 2169 -562 524 363 59 52 chr1 16352292 16352716 -265840948 + MER115 DNA AcHobo 8 434 -259 310 347 139 17 chr1 16352743 16353159 -265840505 - L2 LINE L2 -182 3131 2667 287 217 14 0 chr1 16353174 16353243 -265840421 - MLT1I LTR MaLR -6 403 334 3127 226 4 11 chr1 16353343 16354092 -265839572 - L1P LINE L1 -996 5150 4407 191 111 0 28 chr1 16354152 16354188 -265839476 + (TTC)n Simple_repeat Simple_repeat 3 37 0 1183 208 27 8 chr1 16354222 16354504 -265839160 + MLT1F1 LTR MaLR 231 558 -9 901 145 0 0 chr1 16355054 16355185 -265838479 - AluSc SINE Alu -169 140 10 757 252 0 7 chr1 16355186 16355341 -265838323 + AluJb SINE Alu 107 260 -52 25 51 0 0 chr1 16355344 16355383 -265838281 + AT_rich Low_complexity Low_complexity 1 39 0 2432 82 0 0 chr1 16355385 16355677 -265837987 + AluSx SINE Alu 1 292 -20 2087 159 0 6 chr1 16355677 16355991 -265837673 + AluJb SINE Alu 1 312 0 232 264 33 22 chr1 16355993 16356084 -265837580 + L1MC5 LINE L1 7818 7909 -52 292 216 34 11 chr1 16356086 16356174 -265837490 - Charlie4 DNA MER1_type -132 1829 1740 1281 125 0 0 chr1 16356174 16356342 -265837322 + AluSq SINE Alu 1 168 -145 1283 169 62 21 chr1 16356442 16356684 -265836980 - AluJb SINE Alu -59 253 2 1786 105 112 4 chr1 16356723 16356990 -265836674 + AluSx SINE Alu 1 296 -16 22 0 0 0 chr1 16357301 16357323 -265836341 + AT_rich Low_complexity Low_complexity 1 22 0 1669 97 0 22 chr1 16357326 16357463 -265836201 + AluSx SINE Alu 1 133 -179 2134 121 0 7 chr1 16357463 16357761 -265835903 + AluSg SINE Alu 1 296 -14 1669 97 0 22 chr1 16357761 16357849 -265835815 + AluSx SINE Alu 133 221 -91 595 108 16 78 chr1 16357952 16358081 -265835583 + L1MB3 LINE L1 5859 5979 -204 2042 136 3 3 chr1 16358081 16358382 -265835282 - AluSx SINE Alu -11 301 1 25 0 0 0 chr1 16358384 16358409 -265835255 + AT_rich Low_complexity Low_complexity 1 25 0 902 128 47 0 chr1 16358521 16358669 -265834995 - FRAM SINE Alu -9 167 13 727 213 23 111 chr1 16358688 16358904 -265834760 - AluJo SINE Alu -105 207 11 2156 107 3 7 chr1 16358974 16359265 -265834399 - AluSx SINE Alu -21 291 2 2121 118 3 10 chr1 16359334 16359639 -265834025 - AluSx SINE Alu -9 303 1 662 154 19 0 chr1 16359788 16359892 -265833772 - AluSg/x SINE Alu -14 298 193 2361 74 0 0 chr1 16360259 16360566 -265833098 - AluY SINE Alu 0 307 1 778 99 0 18 chr1 16361024 16361121 -265832543 + AluSc SINE Alu 193 289 -20 815 147 0 0 chr1 16361121 16361237 -265832427 - AluJo/FLAM SINE Alu -185 117 2 778 99 0 18 chr1 16361237 16361250 -265832414 + AluSc SINE Alu 289 301 -8 277 197 45 0 chr1 16361270 16361336 -265832328 - L1MC4 LINE L1 -58 7984 7916 416 315 8 0 chr1 16361345 16361472 -265832192 - L1MC4 LINE L1 -174 7868 7741 782 178 16 0 chr1 16361474 16361603 -265832061 + Tigger3(Golem) DNA MER2_type 2898 3028 -1 1497 193 3 29 chr1 16361638 16361949 -265831715 + AluJb SINE Alu 1 303 -9 972 190 0 11 chr1 16362127 16362301 -265831363 - FAM SINE Alu 0 175 4 2562 47 0 37 chr1 16362332 16362653 -265831011 - AluY SINE Alu -2 309 1 2716 43 0 0 chr1 16362890 16363194 -265830470 - AluY SINE Alu -6 305 2 684 189 16 24 chr1 16363230 16363357 -265830307 - AluJb SINE Alu -19 293 168 433 65 0 86 chr1 16363363 16363456 -265830208 + (TG)n Simple_repeat Simple_repeat 1 85 0 643 173 0 0 chr1 16363456 16363560 -265830104 - FLAM_C SINE Alu -23 120 17 2171 97 7 3 chr1 16363594 16363882 -265829782 - AluSc SINE Alu -18 291 3 207 0 0 0 chr1 16363884 16363907 -265829757 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1189 151 10 44 chr1 16363908 16364113 -265829551 - AluSg/x SINE Alu -29 283 86 2157 119 7 3 chr1 16364119 16364414 -265829250 - AluSg SINE Alu -14 296 1 21 0 0 0 chr1 16364491 16364512 -265829152 + AT_rich Low_complexity Low_complexity 1 21 0 487 196 21 10 chr1 16364643 16364740 -265828924 - FLAM_C SINE Alu -24 119 22 2405 97 0 7 chr1 16364744 16365053 -265828611 + AluSg SINE Alu 1 307 -3 252 67 0 0 chr1 16365717 16365747 -265827917 + Alu SINE Alu 11 40 -263 2347 99 0 0 chr1 16365751 16366045 -265827619 - AluY SINE Alu -17 294 1 880 202 30 0 chr1 16366078 16366246 -265827418 + AluJb SINE Alu 127 299 -13 1960 175 0 0 chr1 16366543 16366846 -265826818 + AluJb SINE Alu 1 303 -9 617 153 96 113 chr1 16366856 16367033 -265826631 + L1MB3 LINE L1 5695 5868 -315 786 182 0 0 chr1 16367136 16367268 -265826396 - FLAM_C SINE Alu 0 133 2 557 144 21 0 chr1 16367270 16367367 -265826297 - L1M4 LINE L1 -394 5784 5686 254 146 0 0 chr1 16367367 16367415 -265826249 - AluJb SINE Alu -4 298 251 967 164 5 35 chr1 16367422 16367623 -265826041 - L1M4 LINE L1 -638 5546 5352 1628 183 4 0 chr1 16367636 16367904 -265825760 - AluJb SINE Alu -43 269 1 41 21 0 0 chr1 16367909 16367957 -265825707 + AT_rich Low_complexity Low_complexity 1 48 0 630 215 8 0 chr1 16367957 16368078 -265825586 - FLAM_C SINE Alu -11 122 1 277 211 0 0 chr1 16368120 16368172 -265825492 - L1M4 LINE L1 -891 5255 5204 2618 51 0 0 chr1 16368210 16368505 -265825159 - AluY SINE Alu -16 295 1 25 0 0 0 chr1 16368810 16368835 -265824829 + AT_rich Low_complexity Low_complexity 1 25 0 1947 123 7 7 chr1 16368835 16369127 -265824537 - AluSq SINE Alu -21 292 1 571 177 100 23 chr1 16369352 16369517 -265824147 - AluJb SINE Alu 0 317 143 2235 101 0 10 chr1 16369644 16369941 -265823723 - AluSx SINE Alu -18 294 1 287 152 212 0 chr1 16370756 16370822 -265822842 - AluSg/x SINE Alu -7 293 214 252 0 0 0 chr1 16370941 16370969 -265822695 + (A)n Simple_repeat Simple_repeat 1 28 0 28 0 0 0 chr1 16371011 16371039 -265822625 + AT_rich Low_complexity Low_complexity 1 28 0 2304 105 0 3 chr1 16371115 16371419 -265822245 + AluSq SINE Alu 1 303 -10 2326 101 7 3 chr1 16371419 16371725 -265821939 + AluSp SINE Alu 1 307 -6 2267 98 0 10 chr1 16371927 16372224 -265821440 + AluSx SINE Alu 1 294 -18 210 135 39 58 chr1 16372850 16372902 -265820762 + (CCCG)n Simple_repeat Simple_repeat 1 51 0 324 83 0 0 chr1 16373029 16373077 -265820587 + (CCG)n Simple_repeat Simple_repeat 2 49 0 24 0 0 0 chr1 16373461 16373485 -265820179 + GC_rich Low_complexity Low_complexity 1 24 0 32 0 0 0 chr1 16376200 16376232 -265817432 + AT_rich Low_complexity Low_complexity 1 32 0 2115 122 3 3 chr1 16376798 16377093 -265816571 + AluSg SINE Alu 1 295 -15 27 29 0 0 chr1 16377568 16377602 -265816062 + AT_rich Low_complexity Low_complexity 1 34 0 1393 159 35 13 chr1 16378015 16378247 -265815417 - AluJb SINE Alu -75 237 1 2103 133 13 0 chr1 16378273 16378581 -265815083 - AluSx SINE Alu 0 312 1 2246 110 0 13 chr1 16378583 16378756 -265814908 - AluSx SINE Alu -6 306 137 2198 105 7 16 chr1 16378756 16379060 -265814604 - AluSg SINE Alu -9 301 1 2246 110 0 13 chr1 16379060 16379196 -265814468 - AluSx SINE Alu -175 137 1 2271 88 24 0 chr1 16379581 16379876 -265813788 - AluSp SINE Alu -11 302 1 457 69 0 0 chr1 16380733 16380791 -265812873 + AluSc SINE Alu 76 133 -176 2345 87 0 26 chr1 16380791 16381100 -265812564 + AluY SINE Alu 1 301 -10 27 0 0 0 chr1 16383958 16383985 -265809679 + AT_rich Low_complexity Low_complexity 1 27 0 1788 160 18 0 chr1 16385764 16386046 -265807618 - AluSx SINE Alu -25 287 1 2193 134 0 0 chr1 16386219 16386525 -265807139 - AluSq SINE Alu -7 306 1 2207 97 26 19 chr1 16387207 16387515 -265806149 + AluSx SINE Alu 3 312 0 1601 137 8 17 chr1 16387537 16387778 -265805886 + AluSq SINE Alu 1 239 -74 2529 61 0 0 chr1 16388156 16388450 -265805214 - AluY SINE Alu -17 294 1 2315 89 10 7 chr1 16388934 16389237 -265804427 - AluSx SINE Alu -8 304 1 1510 152 83 25 chr1 16389468 16389745 -265803919 - AluJo SINE Alu -15 297 5 2157 130 0 0 chr1 16390860 16391152 -265802512 + AluSg SINE Alu 1 292 -18 1123 153 6 0 chr1 16391903 16392073 -265801591 - AluSg/x SINE Alu -13 299 129 2470 75 0 3 chr1 16392285 16392590 -265801074 - AluY SINE Alu -7 304 1 1776 154 29 16 chr1 16393204 16393510 -265800154 - AluSx SINE Alu -2 310 1 316 87 0 0 chr1 16393682 16393728 -265799936 - Alu SINE Alu -3 297 252 1722 153 25 4 chr1 16395471 16395752 -265797912 - AluJo SINE Alu -25 287 1 2476 57 0 47 chr1 16395756 16396074 -265797590 - AluY SINE Alu -8 303 1 249 133 44 0 chr1 16396171 16396216 -265797448 + Alu SINE Alu 270 316 -4 2029 109 3 24 chr1 16396222 16396515 -265797149 + AluSx SINE Alu 4 290 -22 953 123 0 0 chr1 16396577 16396715 -265796949 - AluSg/x SINE Alu -1 311 174 2263 118 0 10 chr1 16396790 16397103 -265796561 - AluSx SINE Alu -2 310 1 2194 107 10 0 chr1 16397118 16397409 -265796255 - AluSp SINE Alu -19 294 1 2160 140 0 6 chr1 16397630 16397945 -265795719 - AluSq SINE Alu 0 313 1 2195 109 0 20 chr1 16398190 16398494 -265795170 - AluSx SINE Alu -14 298 1 1960 84 0 0 chr1 16398772 16399009 -265794655 - AluSg SINE Alu -73 237 1 473 119 95 0 chr1 16399038 16399122 -265794542 - AluSg/x SINE Alu -8 304 213 1489 184 57 3 chr1 16399124 16399423 -265794241 - L1MB8 LINE L1 -38 6140 5826 456 100 0 0 chr1 16399431 16399491 -265794173 - Charlie5 DNA MER1_type -2546 66 7 1535 167 27 38 chr1 16399678 16399832 -265793832 - AluJo SINE Alu -20 292 141 2488 61 3 0 chr1 16399832 16400129 -265793535 - AluY SINE Alu -13 298 1 1535 167 27 38 chr1 16400129 16400267 -265793397 - AluJo SINE Alu -171 141 3 598 109 85 73 chr1 16400402 16400492 -265793172 + Charlie5 DNA MER1_type 2457 2551 -73 2419 77 0 13 chr1 16400492 16400803 -265792861 - AluY SINE Alu -4 307 1 598 109 85 73 chr1 16400803 16400877 -265792787 + Charlie5 DNA MER1_type 2551 2623 -1 26 0 0 0 chr1 16401262 16401288 -265792376 + AT_rich Low_complexity Low_complexity 1 26 0 2221 102 3 0 chr1 16401296 16401604 -265792060 + AluSq SINE Alu 1 309 0 400 111 0 0 chr1 16402168 16402231 -265791433 + FAM SINE Alu 115 177 -2 1730 135 12 12 chr1 16402242 16402501 -265791163 + AluSx SINE Alu 9 267 -45 2248 84 20 0 chr1 16403016 16403312 -265790352 - AluSc SINE Alu -7 302 1 1652 143 121 44 chr1 16403357 16403399 -265790265 - L1MB3 LINE L1 0 6183 6146 2379 79 3 0 chr1 16403399 16403691 -265789973 - AluSp SINE Alu -10 303 11 1652 143 121 44 chr1 16403691 16404013 -265789651 - L1MB3 LINE L1 -37 6146 5791 2216 112 3 13 chr1 16404158 16404463 -265789201 - AluSx SINE Alu -10 302 1 2222 117 7 0 chr1 16404667 16404975 -265788689 - AluSx SINE Alu -2 310 1 1271 178 0 5 chr1 16405247 16405460 -265788204 + AluJo SINE Alu 84 295 -17 2167 104 3 17 chr1 16405676 16405835 -265787829 - AluSx SINE Alu -19 293 138 2190 105 10 7 chr1 16405835 16406141 -265787523 - AluSp SINE Alu -6 307 1 1084 95 0 7 chr1 16406141 16406278 -265787386 - AluSq/x SINE Alu -177 136 1 333 0 0 0 chr1 16406653 16406690 -265786974 + (TG)n Simple_repeat Simple_repeat 2 38 0 3566 137 72 25 chr1 16406690 16407027 -265786637 - L1MB3 LINE L1 -27 6156 5837 2323 111 0 9 chr1 16407027 16407342 -265786322 - AluSx SINE Alu 0 312 1 3566 137 72 25 chr1 16407342 16407641 -265786023 - L1MB3 LINE L1 -346 5837 5482 1932 148 0 28 chr1 16407641 16407958 -265785706 - AluJb SINE Alu -3 309 2 3566 137 72 25 chr1 16407958 16408012 -265785652 - L1MB3 LINE L1 -701 5482 5432 502 198 74 0 chr1 16408017 16408138 -265785526 - FLAM_A SINE Alu 0 142 13 630 128 83 0 chr1 16408141 16408302 -265785362 - L1MB3 LINE L1 -727 5439 5268 1959 135 7 0 chr1 16408311 16408625 -265785039 - AluSx SINE Alu 0 316 1 504 168 204 36 chr1 16409250 16409387 -265784277 - MER20 DNA MER1_type 0 219 60 218 274 103 77 chr1 16409389 16409506 -265784158 - MIR3 SINE MIR -14 194 75 1079 198 146 22 chr1 16409549 16409817 -265783847 + AluJb SINE Alu 2 302 0 23 0 0 0 chr1 16409817 16409840 -265783824 + AT_rich Low_complexity Low_complexity 1 23 0 1711 162 19 42 chr1 16409840 16410149 -265783515 + AluSx SINE Alu 1 302 -10 261 196 179 9 chr1 16410236 16410348 -265783316 - Charlie1 DNA MER1_type -6 2755 2625 627 226 13 6 chr1 16410385 16410399 -265783265 - Charlie1 DNA MER1_type -258 2503 2491 2262 126 7 0 chr1 16410399 16410708 -265782956 - AluSx SINE Alu -1 311 1 627 226 13 6 chr1 16410708 16410852 -265782812 - Charlie1 DNA MER1_type -270 2491 2344 872 135 15 8 chr1 16411009 16411142 -265782522 + AluJo SINE Alu 1 134 -178 1283 171 60 0 chr1 16411907 16412124 -265781540 - AluJb SINE Alu -51 261 32 611 136 82 27 chr1 16412154 16412264 -265781400 - FLAM_A SINE Alu -17 116 1 25 0 0 0 chr1 16412501 16412526 -265781138 + AT_rich Low_complexity Low_complexity 1 25 0 2017 99 92 0 chr1 16412675 16412957 -265780707 + AluSq SINE Alu 1 308 -5 626 121 0 0 chr1 16413146 16413229 -265780435 - AluS SINE Alu -226 86 4 2174 140 3 0 chr1 16413359 16413667 -265779997 - AluSq SINE Alu -4 309 1 2387 112 0 0 chr1 16413688 16414001 -265779663 - AluSq SINE Alu 0 313 1 2380 90 0 7 chr1 16414053 16414352 -265779312 - AluSc SINE Alu -12 297 1 2074 137 6 16 chr1 16414928 16415242 -265778422 - AluSx SINE Alu 0 312 2 1798 150 36 20 chr1 16415245 16415551 -265778113 - AluJo SINE Alu -1 311 1 2136 121 21 0 chr1 16415679 16415969 -265777695 + AluSx SINE Alu 1 296 -16 180 111 0 0 chr1 16416689 16416716 -265776948 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 815 168 0 0 chr1 16416718 16416843 -265776821 - FLAM_C SINE Alu -8 125 1 222 246 109 55 chr1 16416850 16416895 -265776769 - MIR SINE MIR -13 249 208 2079 119 24 3 chr1 16416895 16417189 -265776475 - AluSc SINE Alu -5 304 5 222 246 109 55 chr1 16417189 16417253 -265776411 - MIR SINE MIR -54 208 134 224 325 90 0 chr1 16417374 16417483 -265776181 - MIR SINE MIR -78 130 11 2716 42 3 0 chr1 16418323 16418631 -265775033 + AluY SINE Alu 1 309 -2 464 245 138 86 chr1 16418969 16419296 -265774368 - L1MC4 LINE L1 -1 8041 7698 525 178 30 0 chr1 16419376 16419477 -265774187 + U13 snRNA snRNA 1 104 0 2411 112 0 0 chr1 16420158 16420470 -265773194 + AluSx SINE Alu 1 312 0 276 232 14 29 chr1 16420710 16420779 -265772885 + MER5A DNA MER1_type 38 105 -84 207 0 0 0 chr1 16421930 16421953 -265771711 + (ATTG)n Simple_repeat Simple_repeat 1 23 0 869 197 0 20 chr1 16421953 16422105 -265771559 - AluJb SINE Alu -30 282 134 967 215 142 11 chr1 16422105 16422366 -265771298 + AluSg1 SINE Alu 15 309 0 2338 110 0 3 chr1 16423020 16423328 -265770336 + AluSq SINE Alu 1 307 -6 1488 179 82 0 chr1 16423708 16423976 -265769688 + AluJb SINE Alu 1 290 -22 1786 169 0 22 chr1 16424005 16424318 -265769346 - AluJb SINE Alu -6 306 1 1428 161 0 9 chr1 16424978 16425208 -265768456 - AluJb SINE Alu 0 312 85 1899 150 3 7 chr1 16425324 16425618 -265768046 + AluJb SINE Alu 1 293 -19 2210 106 3 3 chr1 16425874 16426167 -265767497 - AluSq SINE Alu -18 295 3 189 0 0 0 chr1 16426621 16426642 -265767022 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 2059 138 27 0 chr1 16426700 16426998 -265766666 - AluSq SINE Alu -7 306 1 2188 104 26 16 chr1 16428532 16428840 -265764824 - AluSx SINE Alu 0 312 2 35 24 0 0 chr1 16429212 16429254 -265764410 + AT_rich Low_complexity Low_complexity 1 42 0 2336 87 0 13 chr1 16429523 16429822 -265763842 + AluSx SINE Alu 1 295 -17 1735 180 32 0 chr1 16431110 16431393 -265762271 - AluJb SINE Alu -20 292 1 26 0 0 0 chr1 16431550 16431576 -265762088 + AT_rich Low_complexity Low_complexity 1 26 0 2411 88 0 0 chr1 16432153 16432447 -265761217 - AluSg SINE Alu -16 294 1 2326 104 3 0 chr1 16432940 16433239 -265760425 - AluSp SINE Alu -13 300 1 24 53 0 0 chr1 16434037 16434075 -265759589 + AT_rich Low_complexity Low_complexity 1 38 0 664 176 109 0 chr1 16434075 16434194 -265759470 - FLAM_C SINE Alu 0 133 2 276 30 0 0 chr1 16434575 16434593 -265759071 + (CA)n Simple_repeat Simple_repeat 1 18 -300 1677 128 12 19 chr1 16434593 16434850 -265758814 + AluSx SINE Alu 1 255 -57 276 30 0 0 chr1 16434850 16434860 -265758804 + (CA)n Simple_repeat Simple_repeat 17 318 0 276 30 0 0 chr1 16434860 16434893 -265758771 + (CA)n Simple_repeat Simple_repeat 2 34 0 421 248 97 0 chr1 16435058 16435171 -265758493 - L2 LINE L2 -1 3312 3189 2437 87 0 0 chr1 16435171 16435471 -265758193 - AluY SINE Alu -11 300 1 290 294 118 15 chr1 16435775 16435911 -265757753 - MIR SINE MIR -9 253 104 587 171 271 52 chr1 16436175 16436426 -265757238 - MER33 DNA MER1_type 0 324 19 258 231 0 0 chr1 16444443 16444508 -265749156 + C-rich Low_complexity Low_complexity 3 67 0 1782 158 20 27 chr1 16444838 16445135 -265748529 + AluJb SINE Alu 1 295 -17 945 122 0 0 chr1 16445135 16445258 -265748406 + AluSq/x SINE Alu 2 124 -189 1904 126 20 40 chr1 16446593 16446895 -265746769 - AluSx SINE Alu -16 296 1 26 0 0 0 chr1 16446994 16447020 -265746644 + AT_rich Low_complexity Low_complexity 1 26 0 209 57 29 0 chr1 16448569 16448604 -265745060 + (TA)n Simple_repeat Simple_repeat 1 36 0 234 234 0 0 chr1 16453613 16453660 -265740004 + CT-rich Low_complexity Low_complexity 1 47 0 334 238 12 25 chr1 16454901 16454981 -265738683 - L2 LINE L2 0 3313 3235 185 74 0 0 chr1 16455316 16455343 -265738321 - MIR SINE MIR -72 136 110 402 200 88 40 chr1 16456168 16456293 -265737371 + MIR SINE MIR 39 169 -93 260 186 17 0 chr1 16459762 16459821 -265733843 + GA-rich Low_complexity Low_complexity 4 63 0 373 296 89 10 chr1 16460997 16461200 -265732464 + MLT1H LTR MaLR 82 300 -249 282 189 0 0 chr1 16461396 16461449 -265732215 + MLT1G LTR MaLR 537 589 -1 915 150 8 0 chr1 16461659 16461792 -265731872 - AluJb SINE Alu -178 134 1 237 253 13 27 chr1 16462287 16462362 -265731302 + MIR SINE MIR 175 248 -14 1800 141 41 10 chr1 16463056 16463347 -265730317 + AluJb SINE Alu 1 300 -12 2252 95 3 0 chr1 16463352 16463659 -265730005 + AluSx SINE Alu 1 308 0 366 150 0 43 chr1 16464147 16464354 -265729310 + AluJo SINE Alu 1 280 -22 434 266 138 45 chr1 16465240 16465378 -265728286 - L2 LINE L2 -106 3207 3083 2429 88 3 3 chr1 16465378 16465686 -265727978 + AluSg SINE Alu 1 308 -2 434 266 138 45 chr1 16465686 16465859 -265727805 - L2 LINE L2 -230 3083 2867 905 310 109 13 chr1 16465908 16466430 -265727234 - L2 LINE L2 -418 2896 2325 232 315 37 28 chr1 16466435 16466543 -265727121 - L2 LINE L2 -1093 2221 2113 * 240 253 138 11 chr1 16466514 16466601 -265727063 + MIR SINE MIR 49 146 -116 667 129 12 35 chr1 16467960 16468131 -265725533 + GA-rich Low_complexity Low_complexity 3 169 0 893 172 0 7 chr1 16468131 16468282 -265725382 + FRAM SINE Alu 1 40 0 237 265 10 59 chr1 16468726 16468828 -265724836 + MIR SINE MIR 110 206 -56 1505 127 0 5 chr1 16469394 16469607 -265724057 + AluJb SINE Alu 85 296 -16 1753 163 0 14 chr1 16470403 16470722 -265722942 + AluJb SINE Alu 3 317 0 224 300 50 30 chr1 16470959 16471059 -265722605 - MIR SINE MIR -81 181 80 1139 150 12 0 chr1 16471282 16471455 -265722209 + FAM SINE Alu 1 47 -2 824 179 15 0 chr1 16471460 16471594 -265722070 + AluJo SINE Alu 1 136 -176 248 217 141 22 chr1 16471702 16471794 -265721870 + L1ME3 LINE L1 7 109 -6010 1661 146 19 71 chr1 16472308 16472630 -265721034 + AluJo SINE Alu 6 310 -2 335 265 20 33 chr1 16472756 16472907 -265720757 + L1ME3 LINE L1 4483 4631 -1498 2137 136 3 0 chr1 16472915 16473216 -265720448 + AluJb SINE Alu 1 302 -10 2382 77 7 7 chr1 16473313 16473612 -265720052 + AluSg SINE Alu 1 299 -11 1078 246 114 57 chr1 16473613 16474472 -265719192 + L1ME3 LINE L1 5147 6060 -85 934 83 0 30 chr1 16475279 16475395 -265718269 + FRAM SINE Alu 39 152 -160 198 0 0 0 chr1 16475395 16475417 -265718247 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 934 83 0 30 chr1 16475417 16475432 -265718232 + FRAM SINE Alu 152 166 -10 1785 161 0 4 chr1 16475586 16475865 -265717799 + AluJb SINE Alu 15 292 -20 762 196 0 0 chr1 16475876 16476009 -265717655 + FLAM_C SINE Alu 1 133 0 769 268 13 21 chr1 16476175 16476410 -265717254 - MIR SINE MIR -28 234 2 902 177 111 5 chr1 16476410 16476608 -265717056 + MER20 DNA MER1_type 1 219 0 279 349 47 0 chr1 16476803 16476932 -265716732 - L2 LINE L2 -2 3270 3136 3345 123 5 49 chr1 16477400 16477951 -265715713 + MER1A DNA MER1_type 1 527 -2 1161 103 58 0 chr1 16478871 16479027 -265714637 - AluY SINE Alu -14 297 133 2430 91 0 0 chr1 16479027 16479324 -265714340 - AluSg SINE Alu -13 297 1 331 258 10 62 chr1 16479800 16479897 -265713767 - L1MC4 LINE L1 -1339 6703 6612 305 174 11 33 chr1 16479897 16479989 -265713675 + (CATATA)n Simple_repeat Simple_repeat 3 92 0 313 239 33 43 chr1 16479991 16480083 -265713581 - L1MC4 LINE L1 -1339 6703 6613 271 229 193 28 chr1 16480174 16480283 -265713381 - MIR SINE MIR -36 226 100 244 279 128 0 chr1 16480645 16480731 -265712933 + L2 LINE L2 3216 3312 -1 618 288 39 43 chr1 16480999 16481256 -265712408 + MLT1J LTR MaLR 206 461 -50 219 222 19 0 chr1 16481678 16481732 -265711932 + MIR SINE MIR 196 250 -12 258 250 70 20 chr1 16481732 16481832 -265711832 - L2 LINE L2 -30 3242 3138 608 304 159 5 chr1 16481991 16482363 -265711301 + L2 LINE L2 2289 2717 -597 2060 137 10 13 chr1 16482367 16482680 -265710984 + AluJo SINE Alu 1 312 0 1041 153 5 97 chr1 16482717 16482933 -265710731 - AluJo SINE Alu -116 196 1 2400 82 0 3 chr1 16483032 16483335 -265710329 - AluSx SINE Alu -10 302 1 440 304 127 18 chr1 16483639 16483859 -265709805 - MIR SINE MIR -2 260 17 226 208 26 26 chr1 16484198 16484275 -265709389 + (CCCG)n Simple_repeat Simple_repeat 2 78 0 758 237 64 5 chr1 16484725 16484944 -265708720 - MIR SINE MIR 0 262 31 417 404 29 3 chr1 16485074 16485386 -265708278 + L2 LINE L2 926 1245 -2069 2527 67 0 0 chr1 16485484 16485782 -265707882 - AluY SINE Alu -13 298 1 619 191 56 0 chr1 16485795 16485921 -265707743 - FLAM_A SINE Alu 0 133 1 5705 143 9 27 chr1 16485955 16486082 -265707582 - L1PB1 LINE L1 -2 6149 6021 2695 45 0 0 chr1 16486082 16486390 -265707274 - AluY SINE Alu -3 308 1 5705 143 9 27 chr1 16486390 16487080 -265706584 - L1PB1 LINE L1 -130 6021 5366 1924 107 29 58 chr1 16487080 16487390 -265706274 + AluSx SINE Alu 1 301 -11 5705 143 9 27 chr1 16487390 16488116 -265705548 - L1PB1 LINE L1 -785 5366 4628 361 159 0 68 chr1 16488164 16488252 -265705412 - L1PA8 LINE L1 -1 6171 6090 2008 142 3 17 chr1 16488302 16488597 -265705067 + AluJo SINE Alu 1 291 -21 2721 146 27 14 chr1 16488604 16489064 -265704600 - MER49 LTR ERV1 -312 611 142 2307 95 0 0 chr1 16489064 16489394 -265704270 + AluSx SINE Alu 1 330 0 2721 146 27 14 chr1 16489394 16489418 -265704246 - MER49 LTR ERV1 -781 142 120 1560 91 5 5 chr1 16489418 16489637 -265704027 - THE1C LTR MaLR 0 375 157 650 162 77 0 chr1 16489640 16489757 -265703907 + AluSq/x SINE Alu 2 127 -185 1158 85 2 51 chr1 16489772 16489969 -265703695 - THE1C LTR MaLR -164 191 1 864 137 0 0 chr1 16489969 16490093 -265703571 - MER49 LTR ERV1 -799 124 1 2485 136 14 16 chr1 16490093 16490528 -265703136 - L1MB1 LINE L1 -248 5920 5487 2449 79 3 0 chr1 16490694 16490986 -265702678 + AluSp SINE Alu 2 294 -19 636 269 94 71 chr1 16492567 16492677 -265700987 - L1MC5 LINE L1 -45 7916 7810 2338 123 0 0 chr1 16492677 16492987 -265700677 - AluSx SINE Alu -2 310 1 636 269 94 71 chr1 16492987 16493471 -265700193 - L1MC5 LINE L1 -151 7810 7308 2124 134 3 3 chr1 16493472 16493770 -265699894 - AluSx SINE Alu -14 298 1 1847 174 6 16 chr1 16493789 16494100 -265699564 - AluJo SINE Alu -4 308 1 534 240 50 42 chr1 16494220 16494440 -265699224 - L1MC4 LINE L1 -760 7201 7032 * 2031 152 51 88 chr1 16494435 16494785 -265698879 - L1MB7 LINE L1 0 6184 5823 2055 127 3 3 chr1 16494785 16495076 -265698588 - AluSx SINE Alu -21 291 1 2031 152 51 88 chr1 16495076 16495253 -265698411 - L1MB7 LINE L1 -361 5823 5675 2165 125 0 7 chr1 16495253 16495558 -265698106 - AluSx SINE Alu -9 303 1 2031 152 51 88 chr1 16495558 16495574 -265698090 - L1MB7 LINE L1 -509 5675 5660 317 317 45 12 chr1 16495572 16495818 -265697846 - L1MC4 LINE L1 -1850 5958 5705 * 1216 123 0 0 chr1 16495834 16495996 -265697668 - AluSq SINE Alu -151 162 1 2237 126 0 3 chr1 16496107 16496417 -265697247 + AluSx SINE Alu 1 309 -3 22 0 0 0 chr1 16496463 16496485 -265697179 + AT_rich Low_complexity Low_complexity 1 22 0 2423 80 10 0 chr1 16496962 16497262 -265696402 + AluSx SINE Alu 3 305 -7 329 247 11 11 chr1 16497404 16497578 -265696086 + CT-rich Low_complexity Low_complexity 2 175 0 301 316 123 12 chr1 16502946 16503190 -265690474 + HERVL LTR ERVL 4044 4314 -1340 243 214 308 25 chr1 16503517 16503676 -265689988 - L1ME3A LINE L1 -52 6118 5915 622 212 16 54 chr1 16503693 16503842 -265689822 - L1MD3 LINE L1 0 7995 7853 1701 168 10 17 chr1 16503842 16504133 -265689531 + AluJo SINE Alu 1 289 -23 622 212 16 54 chr1 16504133 16504167 -265689497 - L1MD3 LINE L1 -142 7853 7819 320 271 49 8 chr1 16504206 16504328 -265689336 - L1MC3 LINE L1 -163 7622 7496 839 199 14 66 chr1 16504328 16504457 -265689207 - Tigger3(Golem) DNA MER2_type -98 2931 2815 2137 98 0 50 chr1 16504457 16504778 -265688886 + AluSq SINE Alu 1 306 0 839 199 14 66 chr1 16504778 16504858 -265688806 - Tigger3(Golem) DNA MER2_type -214 2815 2732 678 205 0 0 chr1 16504858 16504975 -265688689 + FLAM_C SINE Alu 1 117 -16 419 244 0 0 chr1 16505016 16505098 -265688566 - Tigger3(Golem) DNA MER2_type -2947 82 1 944 159 6 6 chr1 16505099 16505256 -265688408 - MER2 DNA MER2_type -188 157 1 608 216 50 0 chr1 16505394 16505533 -265688131 + MIR SINE MIR 47 192 -70 196 296 0 0 chr1 16506294 16506348 -265687316 - MIR SINE MIR -173 89 36 618 283 38 13 chr1 16506358 16506665 -265686999 + L2 LINE L2 2745 3057 -256 234 130 0 0 chr1 16507330 16507376 -265686288 + Alu SINE Alu 258 303 0 607 175 0 10 chr1 16507381 16507478 -265686186 + AluJ/FLAM SINE Alu 2 97 -215 757 289 134 21 chr1 16507482 16507976 -265685688 - L2 LINE L2 -302 3011 2463 2114 92 7 0 chr1 16508019 16508329 -265685335 - AluSp SINE Alu 0 312 1 670 186 0 0 chr1 16508398 16508511 -265685153 - FLAM_C SINE Alu -19 124 12 2058 108 0 7 chr1 16508537 16508844 -265684820 + AluSg SINE Alu 1 305 0 934 155 0 0 chr1 16508849 16508997 -265684667 + AluJo SINE Alu 87 234 -78 1110 120 0 0 chr1 16509016 16509174 -265684490 - AluJb SINE Alu -154 158 1 1877 240 42 4 chr1 16509177 16509652 -265684012 - L1MD3 LINE L1 -6 7989 7497 1981 131 0 23 chr1 16509686 16509991 -265683673 + AluSq SINE Alu 1 298 -15 1660 153 7 21 chr1 16509996 16510278 -265683386 + AluJb SINE Alu 1 278 -34 23 0 0 0 chr1 16510357 16510380 -265683284 + AT_rich Low_complexity Low_complexity 1 23 0 1863 195 46 72 chr1 16510397 16510720 -265682944 - MLT1D LTR MaLR 0 505 198 2290 84 0 3 chr1 16510720 16511019 -265682645 - AluSx SINE Alu -13 299 2 1863 195 46 72 chr1 16511019 16511192 -265682472 - MLT1D LTR MaLR -307 198 22 282 261 35 9 chr1 16511210 16511325 -265682339 - MER113 DNA MER1_type? -317 204 87 1747 153 0 64 chr1 16511330 16511657 -265682007 + AluSx SINE Alu 6 311 -1 2117 99 3 0 chr1 16511671 16511981 -265681683 + AluSp SINE Alu 1 311 0 2344 90 0 0 chr1 16512004 16512314 -265681350 - AluY SINE Alu -1 310 1 2339 88 0 3 chr1 16512904 16513211 -265680453 + AluSg SINE Alu 1 306 -4 182 94 0 31 chr1 16513656 16513688 -265679976 + MIR SINE MIR 113 143 -119 559 253 154 0 chr1 16513718 16513880 -265679784 + MER5A DNA MER1_type 3 189 0 1553 166 53 11 chr1 16514065 16514349 -265679315 + AluJb SINE Alu 1 296 -16 486 320 111 48 chr1 16515001 16515317 -265678347 - L2 LINE L2 0 3313 2978 201 294 44 0 chr1 16515669 16515737 -265677927 - L2 LINE L2 -18 3295 3225 1780 153 24 3 chr1 16515913 16516208 -265677456 - AluJo SINE Alu -11 301 1 450 293 57 61 chr1 16516212 16516458 -265677206 - MIR SINE MIR -13 249 5 298 332 34 88 chr1 16516480 16516775 -265676889 - L2 LINE L2 -49 3223 2945 433 280 18 48 chr1 16516806 16516974 -265676690 - L2 LINE L2 0 3313 3151 303 289 146 57 chr1 16516963 16516983 -265676681 - L2 LINE L2 -475 2839 2822 * 2080 97 0 52 chr1 16516983 16517312 -265676352 + AluSx SINE Alu 1 312 0 303 289 146 57 chr1 16517312 16517537 -265676127 - L2 LINE L2 -492 2822 2572 583 288 43 5 chr1 16518035 16518219 -265675445 - MIR SINE MIR -71 191 1 1165 199 20 46 chr1 16519223 16519529 -265674135 + LTR37A LTR ERV1 58 355 -71 1598 192 10 82 chr1 16519533 16519704 -265673960 + L1MB7 LINE L1 5541 5670 -514 2151 86 4 0 chr1 16519704 16519982 -265673682 + AluSq SINE Alu 24 302 -11 1598 192 10 82 chr1 16519982 16520201 -265673463 + L1MB7 LINE L1 5670 5903 -281 1620 171 3 47 chr1 16520201 16520523 -265673141 - AluJb SINE Alu -4 308 1 1444 176 4 0 chr1 16520524 16520779 -265672885 - AluJb SINE Alu -15 297 42 464 284 159 10 chr1 16521167 16521368 -265672296 + MIR SINE MIR 32 262 0 300 268 41 10 chr1 16522034 16522131 -265671533 + MIR SINE MIR 48 147 -61 267 200 50 0 chr1 16522196 16522256 -265671408 + L2 LINE L2 3209 3271 -1 684 234 99 22 chr1 16526475 16526697 -265666967 + MIR SINE MIR 20 258 -4 275 308 51 0 chr1 16526973 16527051 -265666613 + MIR SINE MIR 92 173 -89 270 138 0 0 chr1 16527243 16527301 -265666363 + (CCCTG)n Simple_repeat Simple_repeat 3 60 0 2172 96 3 0 chr1 16527659 16527950 -265665714 + AluSx SINE Alu 1 292 -20 938 131 13 0 chr1 16527969 16528122 -265665542 - FRAM SINE Alu -22 154 1 2020 127 0 28 chr1 16528349 16528490 -265665174 + AluSq SINE Alu 1 144 -169 2064 113 10 0 chr1 16528490 16528782 -265664882 + AluSp SINE Alu 1 295 -18 2020 127 0 28 chr1 16528782 16528962 -265664702 + AluSq SINE Alu 144 313 0 208 340 21 0 chr1 16529017 16529111 -265664553 - MIR SINE MIR -65 197 102 2066 112 20 0 chr1 16529598 16529893 -265663771 - AluSx SINE Alu -11 301 1 746 139 47 39 chr1 16529895 16530024 -265663640 - AluJo/FLAM SINE Alu -172 130 1 1175 171 70 9 chr1 16530041 16530269 -265663395 - AluJo SINE Alu -69 243 2 2340 78 3 3 chr1 16530502 16530811 -265662853 + AluSq SINE Alu 1 309 -4 2035 122 0 38 chr1 16530815 16531134 -265662530 + AluSq SINE Alu 3 309 -4 222 329 12 0 chr1 16532010 16532092 -265661572 - MIR3 SINE MIR -45 163 81 1068 175 27 136 chr1 16533144 16533482 -265660182 + AluJo SINE Alu 1 301 -1 687 108 0 0 chr1 16533482 16533584 -265660080 + (GGAA)n Simple_repeat Simple_repeat 2 103 0 261 222 19 0 chr1 16534095 16534149 -265659515 + MIR SINE MIR 116 170 -92 261 229 48 24 chr1 16534289 16534372 -265659292 - MIR SINE MIR -91 171 87 194 289 58 0 chr1 16535578 16535630 -265658034 - MIR SINE MIR -92 170 116 216 256 314 0 chr1 16535638 16535724 -265657940 + L2 LINE L2 3201 3313 0 * 263 299 19 37 chr1 16535723 16535830 -265657834 - MIR SINE MIR -140 122 18 449 196 88 0 chr1 16536010 16536112 -265657552 + MER90 LTR ERV1 488 598 -16 297 0 0 0 chr1 16536896 16536929 -265656735 + (TG)n Simple_repeat Simple_repeat 2 34 0 1318 147 0 26 chr1 16536929 16537150 -265656514 - AluJo SINE Alu -11 301 85 251 228 18 0 chr1 16537156 16537213 -265656451 - MIR SINE MIR -63 145 88 199 294 0 0 chr1 16537215 16537266 -265656398 + L2 LINE L2 3262 3312 -1 2532 226 32 4 chr1 16537485 16538042 -265655622 + MER90 LTR ERV1 3 575 0 1011 159 0 2 chr1 16538278 16538494 -265655170 + (CCA)n Simple_repeat Simple_repeat 1 396 0 247 294 198 16 chr1 16538509 16538635 -265655029 + MIR3 SINE MIR 6 154 -54 2158 104 3 0 chr1 16538704 16539002 -265654662 + AluSx SINE Alu 1 299 -13 2134 98 0 0 chr1 16539645 16539982 -265653682 + AluSx SINE Alu 2 312 0 616 267 125 51 chr1 16540022 16540397 -265653267 + L2 LINE L2 2868 3270 -2 815 156 0 8 chr1 16540675 16540803 -265652861 + FLAM_C SINE Alu 1 127 -6 203 204 0 19 chr1 16540803 16540857 -265652807 + T-rich Low_complexity Low_complexity 3 55 0 1728 148 44 7 chr1 16540886 16541184 -265652480 + AluJo SINE Alu 1 309 -3 1897 144 30 0 chr1 16541476 16541775 -265651889 + AluJb SINE Alu 1 308 -4 393 285 11 62 chr1 16541786 16541965 -265651699 + L1MEd LINE L1 544 713 -5406 1999 106 49 0 chr1 16541965 16542249 -265651415 + AluSx SINE Alu 1 298 -14 2133 91 0 20 chr1 16542311 16542608 -265651056 - AluSx SINE Alu -21 291 1 210 143 0 0 chr1 16542624 16542659 -265651005 + (GGGGA)n Simple_repeat Simple_repeat 4 38 0 2185 201 37 5 chr1 16542659 16543066 -265650598 - MER21B LTR ERV1 -427 436 17 1618 165 73 64 chr1 16543082 16543141 -265650523 + L1M4 LINE L1 5352 5409 -759 1177 154 92 141 chr1 16543141 16543325 -265650339 + MLT1A2 LTR MaLR 5 162 -212 1884 152 3 0 chr1 16543325 16543641 -265650023 - AluJb SINE Alu 0 312 1 1177 154 92 141 chr1 16543641 16543845 -265649819 + MLT1A2 LTR MaLR 162 374 0 1618 165 73 64 chr1 16543845 16544050 -265649614 + L1M4 LINE L1 5409 5611 -557 2324 75 0 0 chr1 16544050 16544344 -265649320 + AluY SINE Alu 1 294 -17 2010 147 0 0 chr1 16544353 16544660 -265649004 + AluSx SINE Alu 1 307 -5 1618 165 73 64 chr1 16544660 16544824 -265648840 + L1M4 LINE L1 5618 5782 -386 1946 142 0 0 chr1 16544825 16545155 -265648509 + AluSx SINE Alu 1 330 0 238 323 31 10 chr1 16545280 16545376 -265648288 + LTR34 LTR ERV1 269 366 -333 584 108 36 27 chr1 16545644 16545755 -265647909 + L1MB7 LINE L1 5785 5896 -282 865 191 6 0 chr1 16545758 16545915 -265647749 - AluJb SINE Alu -22 290 133 1874 136 0 11 chr1 16545935 16546246 -265647418 - AluSx SINE Alu 0 308 1 1029 132 84 0 chr1 16546246 16546436 -265647228 + L1MB7 LINE L1 5908 6113 -71 3964 89 0 8 chr1 16546439 16546954 -265646710 - MER9 LTR ERVK 0 511 1 16814 61 15 6 chr1 16546954 16549144 -265644520 - HERVK9 LTR ERVK 0 5916 3708 * 21745 63 2 1 chr1 16549142 16551925 -265641739 - HERVK9 LTR ERVK -3130 2786 1 3973 92 0 4 chr1 16551925 16552438 -265641226 - MER9 LTR ERVK 0 511 1 265 102 0 0 chr1 16552444 16552493 -265641171 + L1MB7 LINE L1 6117 6165 -19 810 97 0 0 chr1 16552545 16552648 -265641016 + AluSq/x SINE Alu 2 104 -208 756 107 0 0 chr1 16552940 16553043 -265640621 - FRAM SINE Alu -14 162 60 514 177 0 0 chr1 16553093 16553172 -265640492 + AluJ/FLAM SINE Alu 16 94 -218 622 278 25 0 chr1 16553689 16553851 -265639813 + MIR SINE MIR 9 174 -88 675 248 78 72 chr1 16553952 16554299 -265639365 - L2 LINE L2 -86 3227 2879 522 232 20 73 chr1 16554314 16554465 -265639199 - MER20 DNA MER1_type -74 145 3 1409 133 165 16 chr1 16554965 16555220 -265638444 - AluJo SINE Alu -18 294 2 186 43 0 0 chr1 16555307 16555330 -265638334 + (TCTG)n Simple_repeat Simple_repeat 1 23 0 341 285 99 12 chr1 16555491 16555663 -265638001 - L1MD3 LINE L1 -102 7893 7707 846 199 14 66 chr1 16555663 16555792 -265637872 - Tigger3(Golem) DNA MER2_type -98 2930 2814 2005 98 0 50 chr1 16555792 16556113 -265637551 + AluSq SINE Alu 1 306 0 846 199 14 66 chr1 16556113 16556193 -265637471 - Tigger3(Golem) DNA MER2_type -214 2814 2731 719 205 0 0 chr1 16556193 16556310 -265637354 + FLAM_C SINE Alu 1 117 -16 417 244 0 0 chr1 16556351 16556433 -265637231 - Tigger3(Golem) DNA MER2_type -2947 82 1 941 159 6 6 chr1 16556434 16556591 -265637073 - MER2 DNA MER2_type -188 157 1 551 216 60 0 chr1 16556729 16556863 -265636801 + MIR SINE MIR 47 188 -74 217 311 22 33 chr1 16557582 16557672 -265635992 - MIR SINE MIR -138 124 36 708 284 72 5 chr1 16557682 16557986 -265635678 + L2 LINE L2 2745 3068 -245 182 326 12 47 chr1 16558571 16558657 -265635007 - L2 LINE L2 -6 3307 3225 594 184 0 10 chr1 16558691 16558789 -265634875 + AluJ/FLAM SINE Alu 1 97 -215 846 293 132 19 chr1 16558793 16559287 -265634377 - L2 LINE L2 -302 3011 2463 2184 81 7 0 chr1 16559330 16559636 -265634028 - AluSp SINE Alu 0 308 1 682 186 0 0 chr1 16559705 16559818 -265633846 - FLAM_C SINE Alu -19 124 12 2087 108 0 7 chr1 16559844 16560151 -265633513 + AluSg SINE Alu 1 305 0 936 181 0 0 chr1 16560156 16560311 -265633353 + AluJo SINE Alu 87 241 -71 1130 120 0 0 chr1 16560323 16560481 -265633183 - AluJb SINE Alu -154 158 1 1738 242 42 4 chr1 16560484 16560959 -265632705 - L1MD3 LINE L1 -6 7989 7497 2129 108 0 23 chr1 16560993 16561298 -265632366 + AluSq SINE Alu 1 298 -15 1672 160 7 21 chr1 16561303 16561585 -265632079 + AluJb SINE Alu 1 278 -34 23 0 0 0 chr1 16561664 16561687 -265631977 + AT_rich Low_complexity Low_complexity 1 23 0 1734 197 36 74 chr1 16561704 16562033 -265631631 - MLT1D LTR MaLR 0 505 200 2314 84 0 3 chr1 16562033 16562332 -265631332 - AluSx SINE Alu -13 299 2 1734 197 36 74 chr1 16562332 16562505 -265631159 - MLT1D LTR MaLR -305 200 22 257 254 33 16 chr1 16562523 16562638 -265631026 - MER113 DNA MER1_type? -317 204 85 1819 157 0 60 chr1 16562638 16562969 -265630695 + AluSx SINE Alu 1 311 -1 2170 95 3 0 chr1 16562983 16563293 -265630371 + AluSp SINE Alu 1 311 0 2404 84 0 0 chr1 16563316 16563626 -265630038 - AluY SINE Alu -1 310 1 2344 88 0 3 chr1 16564216 16564521 -265629143 + AluSg SINE Alu 1 304 -6 185 94 0 31 chr1 16564966 16564998 -265628666 + MIR SINE MIR 113 143 -119 613 210 161 6 chr1 16565028 16565190 -265628474 + MER5A DNA MER1_type 3 189 0 1597 166 53 11 chr1 16565375 16565659 -265628005 + AluJb SINE Alu 1 296 -16 522 320 111 48 chr1 16566311 16566627 -265627037 - L2 LINE L2 0 3313 2978 199 257 86 0 chr1 16566979 16567049 -265626615 - L2 LINE L2 -18 3295 3220 1819 153 24 3 chr1 16567224 16567519 -265626145 - AluJo SINE Alu -11 301 1 452 293 57 61 chr1 16567523 16567769 -265625895 - MIR SINE MIR -13 249 5 337 319 119 37 chr1 16567791 16568086 -265625578 - L2 LINE L2 -49 3264 2946 452 280 23 46 chr1 16568117 16568292 -265625372 - L2 LINE L2 0 3313 3143 322 298 143 49 chr1 16568274 16568294 -265625370 - L2 LINE L2 -475 2839 2822 * 1966 100 6 58 chr1 16568294 16568623 -265625041 + AluSx SINE Alu 1 312 0 322 298 143 49 chr1 16568623 16568847 -265624817 - L2 LINE L2 -492 2822 2572 629 283 43 5 chr1 16569345 16569529 -265624135 - MIR SINE MIR -71 191 1 1082 214 22 11 chr1 16570564 16570840 -265622824 + LTR37A LTR ERV1 77 355 -71 1529 202 19 30 chr1 16570844 16570991 -265622673 + L1MB7 LINE L1 5541 5688 -496 2182 90 17 7 chr1 16570991 16571290 -265622374 + AluSq SINE Alu 1 302 -11 1529 202 19 30 chr1 16571290 16571509 -265622155 + L1MB7 LINE L1 5688 5903 -281 1543 186 3 47 chr1 16571509 16571831 -265621833 - AluJb SINE Alu -4 308 1 1479 176 4 0 chr1 16571832 16572087 -265621577 - AluJb SINE Alu -15 297 42 491 289 159 10 chr1 16572475 16572676 -265620988 + MIR SINE MIR 32 262 0 322 268 41 10 chr1 16573341 16573438 -265620226 + MIR SINE MIR 48 147 -61 298 259 35 60 chr1 16573435 16573551 -265620113 + L2 LINE L2 3159 3271 -1 * 246 105 0 0 chr1 16577657 16577695 -265615969 + (GGA)n Simple_repeat Simple_repeat 2 39 0 278 270 155 40 chr1 16578656 16578804 -265614860 - MIR SINE MIR -70 192 28 211 257 97 53 chr1 16579856 16579969 -265613695 - MER5A DNA MER1_type -22 167 50 378 286 0 71 chr1 16580006 16580146 -265613518 - L2 LINE L2 -6 3266 3137 206 192 200 67 chr1 16580120 16580240 -265613424 - MIR3 SINE MIR -62 146 11 * 268 307 170 0 chr1 16580726 16580879 -265612785 + MIR SINE MIR 63 241 -21 320 349 81 15 chr1 16581142 16581340 -265612324 + MIR SINE MIR 27 237 -25 441 301 26 32 chr1 16583804 16583960 -265609704 + MIR3 SINE MIR 46 200 -8 669 247 47 16 chr1 16584202 16584392 -265609272 - MIR SINE MIR -32 230 35 184 316 40 0 chr1 16584976 16585052 -265608612 + MIR SINE MIR 67 145 -63 1607 147 22 67 chr1 16585095 16585407 -265608257 + AluJb SINE Alu 1 298 -14 2188 81 7 3 chr1 16585447 16585757 -265607907 - AluSq SINE Alu 0 312 2 28 0 0 0 chr1 16586623 16586651 -265607013 + GC_rich Low_complexity Low_complexity 1 28 0 301 194 30 0 chr1 16586730 16586797 -265606867 + MIR SINE MIR 103 171 -91 213 258 15 15 chr1 16587196 16587262 -265606402 + CT-rich Low_complexity Low_complexity 1 66 0 331 312 78 0 chr1 16588603 16588744 -265604920 - MIR SINE MIR -55 207 56 342 303 77 3 chr1 16589121 16589272 -265604392 + MIR SINE MIR 65 241 -21 189 280 67 0 chr1 16590514 16590589 -265603075 + MIR SINE MIR 49 128 -80 367 263 89 30 chr1 16590628 16590766 -265602898 - MIR3 SINE MIR -70 138 5 203 301 84 12 chr1 16590907 16590990 -265602674 + MIR3 SINE MIR 97 185 -23 506 250 47 27 chr1 16591613 16591761 -265601903 + MIR SINE MIR 38 188 -74 199 325 9 38 chr1 16592454 16592560 -265601104 + MIR SINE MIR 8 109 -105 373 290 14 36 chr1 16595235 16595373 -265598291 + MIR3 SINE MIR 24 158 -50 575 246 123 0 chr1 16595551 16595730 -265597934 + MIR SINE MIR 45 245 -17 334 275 122 8 chr1 16595801 16595932 -265597732 - MIR3 SINE MIR -58 150 5 1660 114 65 30 chr1 16597569 16597697 -265595967 + AluSx SINE Alu 3 125 -187 612 0 0 0 chr1 16597697 16597765 -265595899 + (CA)n Simple_repeat Simple_repeat 2 69 0 1660 114 65 30 chr1 16597765 16597898 -265595766 + AluSx SINE Alu 125 273 -39 513 258 78 88 chr1 16598302 16598472 -265595192 + LTR16A1 LTR ERVL 59 229 -228 2107 139 0 0 chr1 16598472 16598782 -265594882 + AluSx SINE Alu 1 310 -2 513 258 78 88 chr1 16598782 16599010 -265594654 + LTR16A1 LTR ERVL 229 453 -4 467 305 57 23 chr1 16599964 16600141 -265593523 + MIR SINE MIR 46 228 -34 1962 125 50 0 chr1 16600638 16600935 -265592729 - AluSx SINE Alu 0 312 1 257 288 176 7 chr1 16602487 16602640 -265591024 + MIR SINE MIR 63 241 -21 324 343 81 15 chr1 16602903 16603101 -265590563 + MIR SINE MIR 27 237 -25 246 62 0 0 chr1 16604057 16604089 -265589575 + (CA)n Simple_repeat Simple_repeat 1 32 0 461 308 27 0 chr1 16605504 16605650 -265588014 + MIR3 SINE MIR 51 200 -8 670 247 47 16 chr1 16605900 16606090 -265587574 - MIR SINE MIR -32 230 35 237 194 129 16 chr1 16606446 16606508 -265587156 - MIR SINE MIR -62 146 78 198 326 11 22 chr1 16606757 16606849 -265586815 + MIR SINE MIR 55 145 -63 1584 180 3 11 chr1 16606867 16607186 -265586478 + AluJo SINE Alu 1 317 0 1439 215 24 0 chr1 16607199 16607487 -265586177 + AluJo SINE Alu 1 295 -17 257 284 74 0 chr1 16608525 16608606 -265585058 + MIR SINE MIR 83 169 -93 204 291 0 47 chr1 16609006 16609092 -265584572 + CT-rich Low_complexity Low_complexity 4 85 0 403 275 101 0 chr1 16610359 16610497 -265583167 - MIR SINE MIR -55 207 56 367 287 37 0 chr1 16610862 16610970 -265582694 + MIR3 SINE MIR 60 171 -37 182 301 48 29 chr1 16612213 16612316 -265581348 + MIR SINE MIR 24 128 -80 384 246 89 30 chr1 16612355 16612493 -265581171 - MIR3 SINE MIR -70 138 5 181 265 41 0 chr1 16612635 16612684 -265580980 + MIR SINE MIR 95 145 -117 1922 144 10 0 chr1 16612742 16613033 -265580631 - AluSx SINE Alu -18 294 1 503 250 47 27 chr1 16613543 16613691 -265579973 + MIR SINE MIR 38 188 -74 378 284 37 0 chr1 16614045 16614154 -265579510 - MER91A DNA MER1_type -82 114 2 259 348 0 0 chr1 16614177 16614266 -265579398 + MIR SINE MIR 69 157 -105 331 221 18 80 chr1 16614930 16615043 -265578621 + MIR SINE MIR 65 170 -92 245 345 0 27 chr1 16615714 16615824 -265577840 + MIR3 SINE MIR 13 119 -89 319 294 29 37 chr1 16618491 16618627 -265575037 + MIR3 SINE MIR 24 158 -50 582 256 117 0 chr1 16618805 16618985 -265574679 + MIR SINE MIR 45 245 -17 333 304 22 37 chr1 16619056 16619191 -265574473 - MIR SINE MIR -58 150 18 657 257 120 44 chr1 16621141 16621507 -265572157 + LTR16A1 LTR ERVL 61 454 -3 21 0 0 0 chr1 16622084 16622105 -265571559 + GC_rich Low_complexity Low_complexity 1 21 0 445 322 51 17 chr1 16622472 16622649 -265571015 + MIR SINE MIR 46 228 -34 345 261 60 37 chr1 16622772 16622906 -265570758 + L1MCa LINE L1 1944 2080 -4346 350 317 177 58 chr1 16623538 16625126 -265568538 + L2 LINE L2 868 2644 -670 266 324 120 12 chr1 16625312 16625553 -265568111 + LTR16A1 LTR ERVL 161 427 -30 2087 107 45 0 chr1 16625602 16625892 -265567772 - AluSx SINE Alu -9 303 1 210 283 17 0 chr1 16626165 16626225 -265567439 + MIR SINE MIR 81 141 -67 180 111 0 0 chr1 16626320 16626347 -265567317 + (GAATG)n Simple_repeat Simple_repeat 3 29 0 231 218 55 0 chr1 16626347 16626402 -265567262 - MER112 DNA MER1_type -113 147 90 261 224 30 0 chr1 16626462 16626529 -265567135 - MER112 DNA MER1_type -185 75 7 207 355 233 15 chr1 16627385 16627647 -265566017 - L3b LINE CR1 -159 1424 1106 202 274 51 86 chr1 16627684 16627801 -265565863 - MIR3 SINE MIR -89 119 7 247 278 44 0 chr1 16627938 16628028 -265565636 + MIR SINE MIR 48 141 -121 724 282 31 54 chr1 16628648 16628907 -265564757 - MIR SINE MIR -8 254 2 195 352 148 23 chr1 16628975 16629063 -265564601 + L2 LINE L2 3125 3223 -49 1760 150 21 11 chr1 16629476 16629763 -265563901 - AluJo SINE Alu -17 295 6 350 309 229 5 chr1 16629811 16629999 -265563665 + MIR SINE MIR 27 256 -6 870 104 0 56 chr1 16630215 16630359 -265563305 + AluJo SINE Alu 1 136 -176 932 248 9 14 chr1 16630373 16630587 -265563077 - MIR SINE MIR 0 262 50 509 342 13 6 chr1 16630963 16631121 -265562543 + MIR SINE MIR 8 166 -96 285 349 30 8 chr1 16631769 16631901 -265561763 + L2 LINE L2 3138 3272 0 196 325 26 0 chr1 16632160 16632237 -265561427 - MIR SINE MIR -112 150 72 426 317 6 22 chr1 16632484 16632667 -265560997 + (CA)n Simple_repeat Simple_repeat 1 180 0 207 0 0 0 chr1 16632706 16632729 -265560935 + (CA)n Simple_repeat Simple_repeat 2 24 0 2278 84 0 40 chr1 16632949 16633096 -265560568 + AluSx SINE Alu 1 152 -160 2083 100 30 10 chr1 16633096 16633395 -265560269 + AluSq SINE Alu 1 305 -8 2278 84 0 40 chr1 16633395 16633569 -265560095 + AluSx SINE Alu 152 309 -3 712 255 99 5 chr1 16633733 16633945 -265559719 + MIR SINE MIR 13 244 -18 211 244 0 0 chr1 16634047 16634088 -265559576 - L2 LINE L2 -5 3308 3268 590 183 70 0 chr1 16634693 16634808 -265558856 - MIR SINE MIR -56 152 30 187 163 0 93 chr1 16635688 16635731 -265557933 + L2 LINE L2 3272 3310 -3 534 296 36 109 chr1 16635807 16636192 -265557472 - L2 LINE L2 -1 3271 2915 249 125 25 0 chr1 16686352 16686392 -265507272 - Alu SINE Alu -264 44 4 248 294 67 8 chr1 16686636 16686755 -265506909 + MIR3 SINE MIR 34 159 -49 319 268 134 43 chr1 16687035 16687199 -265506465 + HAL1 LINE L1 1121 1299 -1208 198 274 0 16 chr1 16688157 16688219 -265505445 - L3b LINE CR1 -217 1366 1306 2141 127 0 0 chr1 16688355 16688655 -265505009 + AluSx SINE Alu 1 300 -12 481 288 15 0 chr1 16688873 16689005 -265504659 - L2 LINE L2 -11 3302 3169 260 300 77 23 chr1 16689053 16689183 -265504481 + L2 LINE L2 2965 3101 -171 1296 264 95 45 chr1 16689201 16689841 -265503823 - L1ME3 LINE L1 -2 6160 5489 911 147 15 0 chr1 16689982 16690118 -265503546 + AluSg/x SINE Alu 136 273 -39 825 131 31 0 chr1 16690121 16690281 -265503383 + GA-rich Low_complexity Low_complexity 3 167 0 225 325 179 0 chr1 16691023 16691174 -265502490 - L3 LINE CR1 -10 1567 1390 371 270 79 85 chr1 16691177 16691366 -265502298 - MIR SINE MIR 0 262 75 504 273 81 29 chr1 16691549 16691721 -265501943 + MER5A DNA MER1_type 7 187 -2 1600 112 155 4 chr1 16691755 16692013 -265501651 + AluSx SINE Alu 1 297 -15 252 163 20 20 chr1 16692873 16692922 -265500742 - L2 LINE L2 -229 3043 2995 978 236 4 54 chr1 16693154 16693276 -265500388 + MIR SINE MIR 29 135 -127 2206 81 20 3 chr1 16693276 16693571 -265500093 + AluSx SINE Alu 1 300 -12 978 236 4 54 chr1 16693571 16693689 -265499975 + MIR SINE MIR 135 257 -5 219 241 19 0 chr1 16693710 16693764 -265499900 + (CTCA)n Simple_repeat Simple_repeat 2 56 0 542 299 123 0 chr1 16694457 16694644 -265499020 - MIR SINE MIR -12 250 41 560 138 55 9 chr1 16694780 16694889 -265498775 - L1MB3 LINE L1 -68 6115 6002 2120 100 3 13 chr1 16694922 16695248 -265498416 + AluSq SINE Alu 1 313 0 516 293 29 46 chr1 16695248 16695422 -265498242 + MIR SINE MIR 89 259 -3 207 250 261 0 chr1 16695711 16695803 -265497861 - MIR SINE MIR -119 143 28 218 130 43 43 chr1 16695885 16695931 -265497733 - MIR SINE MIR -117 145 100 536 231 36 107 chr1 16696260 16696338 -265497326 + MER63A DNA MER1_type 1 83 -1605 2318 96 0 3 chr1 16696338 16696651 -265497013 + AluSx SINE Alu 1 312 0 536 231 36 107 chr1 16696651 16696797 -265496867 + MER63A DNA MER1_type 83 209 -1 353 278 41 0 chr1 16696799 16696896 -265496768 + MIR SINE MIR 83 183 -79 2035 125 0 28 chr1 16698520 16698702 -265494962 - AluSg SINE Alu 0 310 139 2327 52 42 0 chr1 16698702 16698991 -265494673 - AluY SINE Alu -10 301 1 2035 125 0 28 chr1 16698991 16699127 -265494537 - AluSg SINE Alu -171 139 1 1869 131 6 51 chr1 16699128 16699305 -265494359 - AluJb SINE Alu -12 300 142 2286 83 0 0 chr1 16699305 16699593 -265494071 - AluY SINE Alu -19 292 5 1869 131 6 51 chr1 16699593 16699729 -265493935 - AluJb SINE Alu -170 142 1 469 251 15 70 chr1 16699916 16700130 -265493534 + MIR SINE MIR 35 234 -28 2173 95 17 0 chr1 16700177 16700471 -265493193 + AluSx SINE Alu 3 301 -11 1169 63 25 13 chr1 16700471 16700629 -265493035 + L1PA7 LINE L1 5991 6150 -4 258 105 0 0 chr1 16701152 16701190 -265492474 + (ATG)n Simple_repeat Simple_repeat 2 39 0 485 312 71 18 chr1 16701248 16701418 -265492246 + MIR SINE MIR 21 199 -63 1855 149 10 0 chr1 16701420 16701731 -265491933 + AluSx SINE Alu 1 314 0 458 301 29 0 chr1 16701934 16702070 -265491594 - MIR SINE MIR -100 162 23 191 353 0 0 chr1 16702335 16702386 -265491278 - L3b LINE CR1 -95 1488 1438 391 297 125 10 chr1 16702593 16702785 -265490879 - MIR SINE MIR -2 260 47 328 336 18 0 chr1 16703248 16703358 -265490306 - MIR3 SINE MIR -87 121 10 417 335 54 12 chr1 16703969 16704136 -265489528 - MIR SINE MIR -14 248 75 2241 100 7 3 chr1 16705073 16705382 -265488282 - AluSq SINE Alu -3 310 1 192 296 0 0 chr1 16706054 16706098 -265487566 - L2 LINE L2 -89 3183 3140 411 277 0 11 chr1 16706644 16706738 -265486926 + MIR SINE MIR 72 164 -98 1712 174 10 16 chr1 16706932 16707236 -265486428 + AluJo SINE Alu 1 302 -10 399 259 6 82 chr1 16707443 16707601 -265486063 + MIR SINE MIR 111 256 -6 248 335 47 0 chr1 16707834 16707976 -265485688 + MIR SINE MIR 32 178 -63 2099 127 0 0 chr1 16708002 16708293 -265485371 + AluSx SINE Alu 1 291 -21 191 125 0 0 chr1 16708733 16708765 -265484899 - MIR3 SINE MIR -15 193 162 201 367 38 0 chr1 16708976 16709055 -265484609 - MIR3 SINE MIR -38 170 89 * 287 339 80 0 chr1 16709044 16709156 -265484508 + MIR SINE MIR 72 192 -70 189 103 0 0 chr1 16709274 16709303 -265484361 - L2 LINE L2 -224 3048 3020 1356 149 44 104 chr1 16709313 16709454 -265484210 + AluJo SINE Alu 1 149 -163 2045 91 0 11 chr1 16709454 16709728 -265483936 + AluSg SINE Alu 2 272 -38 1356 149 44 104 chr1 16709728 16709902 -265483762 + AluJo SINE Alu 149 297 -15 2267 102 0 6 chr1 16710812 16711126 -265482538 + AluSx SINE Alu 1 312 0 1030 136 0 57 chr1 16711126 16711302 -265482362 + AluSg/x SINE Alu 134 299 -13 228 310 0 0 chr1 16711628 16711686 -265481978 + (TGGA)n Simple_repeat Simple_repeat 3 60 0 3227 73 7 0 chr1 16711874 16712327 -265481337 - HERVK9 LTR ERVK -5460 456 1 3973 92 0 4 chr1 16712327 16712840 -265480824 - MER9 LTR ERVK 0 511 1 254 102 0 0 chr1 16712846 16712895 -265480769 + L1MB7 LINE L1 6117 6165 -19 812 96 0 0 chr1 16712946 16713050 -265480614 + AluSq/x SINE Alu 1 104 -209 756 107 0 0 chr1 16713342 16713445 -265480219 - FRAM SINE Alu -14 162 60 515 177 0 0 chr1 16713495 16713574 -265480090 + AluJ/FLAM SINE Alu 16 94 -218 644 270 75 26 chr1 16714091 16714317 -265479347 + MIR SINE MIR 9 245 -17 701 268 63 58 chr1 16714354 16714701 -265478963 - L2 LINE L2 -86 3227 2879 468 232 20 73 chr1 16714716 16714867 -265478797 - MER20 DNA MER1_type -74 145 3 1435 133 165 16 chr1 16715367 16715622 -265478042 - AluJo SINE Alu -18 294 2 186 43 0 0 chr1 16715709 16715732 -265477932 + (TCTG)n Simple_repeat Simple_repeat 1 23 0 213 223 0 0 chr1 16715942 16716036 -265477628 + (CA)n Simple_repeat Simple_repeat 1 94 0 226 278 196 0 chr1 16716418 16716515 -265477149 + MIR SINE MIR 25 140 -68 238 310 149 0 chr1 16717331 16717418 -265476246 + MIR SINE MIR 46 145 -63 278 253 105 11 chr1 16717518 16717613 -265476051 + MIR3 SINE MIR 52 155 -53 2044 104 31 0 chr1 16717675 16717962 -265475702 + AluSx SINE Alu 1 296 -16 1662 140 0 0 chr1 16717971 16718207 -265475457 + AluSx SINE Alu 1 236 -76 2221 78 0 0 chr1 16718248 16718554 -265475110 + AluSc SINE Alu 1 306 0 277 301 161 7 chr1 16719262 16719405 -265474259 - MIR SINE MIR -70 192 28 181 337 184 0 chr1 16719517 16719615 -265474049 + MIR SINE MIR 141 256 -6 464 326 96 21 chr1 16720544 16720964 -265472700 + L2 LINE L2 2746 3220 -52 248 274 186 0 chr1 16720979 16721092 -265472572 - L2 LINE L2 0 3313 3180 2179 84 14 3 chr1 16721214 16721510 -265472154 + AluSg SINE Alu 1 299 -11 749 252 87 22 chr1 16721758 16721865 -265471799 + MIR SINE MIR 15 114 -148 492 234 47 23 chr1 16721865 16721993 -265471671 + MER94 DNA DNA 1 131 -3 749 252 87 22 chr1 16721993 16722115 -265471549 + MIR SINE MIR 114 259 -3 234 0 0 0 chr1 16722137 16722163 -265471501 + (CA)n Simple_repeat Simple_repeat 1 26 0 1956 142 0 26 chr1 16722303 16722612 -265471052 - AluSq SINE Alu -12 301 1 238 331 39 15 chr1 16723259 16723389 -265470275 - MIR SINE MIR -59 149 17 396 235 92 8 chr1 16723471 16723590 -265470074 + MIR SINE MIR 64 192 -70 334 299 0 31 chr1 16723924 16724021 -265469643 - L2 LINE L2 0 3313 3220 426 280 82 104 chr1 16724621 16724900 -265468764 + L2 LINE L2 2973 3245 -27 613 290 12 0 chr1 16725070 16725239 -265468425 + MIR SINE MIR 90 260 -2 2263 189 36 61 chr1 16725274 16725547 -265468117 - L1MC3 LINE L1 -503 7282 7004 2037 148 0 3 chr1 16725547 16725850 -265467814 - AluSx SINE Alu -10 302 1 2263 189 36 61 chr1 16725850 16726220 -265467444 - L1MC3 LINE L1 -781 7004 6655 183 262 0 0 chr1 16726950 16726992 -265466672 + MIR SINE MIR 37 78 -130 306 295 152 10 chr1 16726996 16727302 -265466362 + L2 LINE L2 2716 3096 -176 414 353 35 6 chr1 16727379 16727421 -265466243 + MIR3 SINE MIR 11 50 -158 2393 86 0 0 chr1 16727421 16727725 -265465939 + AluSc SINE Alu 2 305 -4 414 353 35 6 chr1 16727725 16727855 -265465809 + MIR3 SINE MIR 50 188 -20 341 319 61 43 chr1 16727836 16727999 -265465665 + MIR SINE MIR 47 212 -50 * 28 0 0 0 chr1 16728421 16728449 -265465215 + AT_rich Low_complexity Low_complexity 1 28 0 271 271 0 41 chr1 16729359 16729481 -265464183 + G-rich Low_complexity Low_complexity 4 120 0 637 199 35 7 chr1 16729634 16729775 -265463889 - MIR SINE MIR -67 195 51 284 337 123 6 chr1 16730678 16730841 -265462823 + MER5A DNA MER1_type 8 189 0 297 233 68 0 chr1 16730919 16730992 -265462672 + L2 LINE L2 3195 3272 0 222 222 0 37 chr1 16731216 16731270 -265462394 - L2 LINE L2 0 3313 3262 305 219 61 12 chr1 16732209 16732291 -265461373 - MIR SINE MIR -161 101 16 207 269 75 0 chr1 16732925 16732992 -265460672 + MIR SINE MIR 68 139 -69 355 284 167 29 chr1 16733009 16733213 -265460451 + MIR SINE MIR 31 262 0 195 333 37 0 chr1 16733670 16733751 -265459913 + MIR SINE MIR 63 146 -116 556 270 153 5 chr1 16733874 16734063 -265459601 + MIR SINE MIR 17 233 -29 1949 151 0 0 chr1 16734660 16734958 -265458706 - AluJb SINE Alu -14 298 1 252 314 57 0 chr1 16735035 16735140 -265458524 + L2 LINE L2 2966 3076 -196 207 292 0 0 chr1 16735143 16735232 -265458432 + (CA)n Simple_repeat Simple_repeat 1 89 0 233 274 0 0 chr1 16735271 16735322 -265458342 + L2 LINE L2 3248 3298 -15 2241 103 0 0 chr1 16735326 16735626 -265458038 + AluSq SINE Alu 1 300 -13 204 347 6 40 chr1 16736513 16736686 -265456978 + G-rich Low_complexity Low_complexity 6 172 0 247 322 17 39 chr1 16736851 16737031 -265456633 + G-rich Low_complexity Low_complexity 3 178 0 207 237 88 105 chr1 16738323 16738437 -265455227 - MIR SINE MIR -33 229 118 383 309 49 0 chr1 16739337 16739460 -265454204 - MIR SINE MIR -118 144 16 1886 166 3 0 chr1 16739902 16740198 -265453466 - AluJo SINE Alu -15 297 1 288 0 0 0 chr1 16740332 16740364 -265453300 + (TAA)n Simple_repeat Simple_repeat 2 33 0 2084 92 4 0 chr1 16740366 16740638 -265453026 + AluSp SINE Alu 1 273 -40 438 192 217 25 chr1 16740739 16740822 -265452842 - MIR SINE MIR -118 144 78 1290 125 58 31 chr1 16740822 16740938 -265452726 + MER30 DNA MER1_type 1 112 -118 2236 94 0 3 chr1 16740938 16741235 -265452429 + AluSg SINE Alu 1 296 -14 1290 125 58 31 chr1 16741235 16741342 -265452322 + MER30 DNA MER1_type 112 230 0 438 192 217 25 chr1 16741342 16741378 -265452286 - MIR SINE MIR -184 78 2 198 217 43 0 chr1 16742152 16742198 -265451466 + MIR SINE MIR 96 143 -65 198 333 73 0 chr1 16743047 16743143 -265450521 - L2 LINE L2 -9 3304 3202 418 287 129 34 chr1 16744019 16744228 -265449436 - MIR SINE MIR -21 241 13 2016 106 62 0 chr1 16744230 16744522 -265449142 - AluSx SINE Alu -2 310 1 825 123 0 15 chr1 16744524 16744654 -265449010 - AluJo/FLAM SINE Alu -174 128 1 283 356 19 0 chr1 16745850 16745954 -265447710 - L2 LINE L2 -9 3263 3158 719 204 4 0 chr1 16746093 16746344 -265447320 + (TGGA)n Simple_repeat Simple_repeat 1 252 0 403 259 6 6 chr1 16746326 16746488 -265447176 + (TGGG)n Simple_repeat Simple_repeat 1 162 0 * 735 182 11 6 chr1 16746468 16746644 -265447020 + (TGGA)n Simple_repeat Simple_repeat 1 177 0 253 196 0 0 chr1 16746645 16746691 -265446973 + (TGGG)n Simple_repeat Simple_repeat 1 46 0 869 168 6 0 chr1 16746699 16746878 -265446786 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 195 42 0 0 chr1 16747758 16747782 -265445882 + (GGGA)n Simple_repeat Simple_repeat 2 25 0 289 293 113 0 chr1 16748280 16748386 -265445278 - MIR3 SINE MIR -26 182 65 411 217 21 19 chr1 16748441 16748567 -265445097 + MIR SINE MIR 101 226 -36 586 294 0 0 chr1 16749439 16749582 -265444082 + MIR SINE MIR 43 185 -77 209 303 15 0 chr1 16750498 16750564 -265443100 - MIR3 SINE MIR -53 155 89 213 239 0 22 chr1 16750986 16751032 -265442632 + MER5B DNA MER1_type 121 165 -13 386 297 0 42 chr1 16751046 16751164 -265442500 - MIR3 SINE MIR -53 155 43 1028 238 40 0 chr1 16751227 16751479 -265442185 - MIR SINE MIR 0 262 1 2003 116 3 20 chr1 16751494 16751797 -265441867 - AluJb SINE Alu -14 298 1 518 279 61 0 chr1 16752925 16753072 -265440592 + MIR SINE MIR 81 236 -26 318 288 72 16 chr1 16753395 16753520 -265440144 + L2 LINE L2 3133 3264 -8 332 266 35 9 chr1 16753620 16753733 -265439931 + MIR3 SINE MIR 87 202 -6 241 284 64 0 chr1 16753900 16754009 -265439655 - MIR SINE MIR -63 145 30 193 318 62 31 chr1 16754785 16754914 -265438750 - MIR3 SINE MIR -75 133 1 194 67 0 33 chr1 16757317 16757347 -265436317 + MIR SINE MIR 119 147 -61 2292 87 0 6 chr1 16758134 16758446 -265435218 + AluSq SINE Alu 1 310 -3 502 294 38 19 chr1 16760243 16760403 -265433261 - MIR SINE MIR -59 203 41 388 318 11 6 chr1 16761071 16761218 -265432446 + (TG)n Simple_repeat Simple_repeat 1 151 -29 2067 116 13 20 chr1 16761218 16761520 -265432144 + AluSx SINE Alu 1 300 -12 388 318 11 6 chr1 16761520 16761551 -265432113 + (TG)n Simple_repeat Simple_repeat 151 180 0 217 244 7 7 chr1 16761578 16761713 -265431951 + (TG)n Simple_repeat Simple_repeat 1 135 0 372 286 117 7 chr1 16761753 16761907 -265431757 + MIR SINE MIR 92 262 0 2162 103 27 0 chr1 16762232 16762524 -265431140 + AluSx SINE Alu 1 300 -12 250 246 15 46 chr1 16762524 16762579 -265431085 + L2 LINE L2 3217 3271 -1 1332 146 0 62 chr1 16763366 16763606 -265430058 + AluJb SINE Alu 88 312 0 459 304 15 7 chr1 16763611 16763746 -265429918 - MIR SINE MIR -5 257 122 2537 80 0 0 chr1 16764144 16764446 -265429218 - AluSg SINE Alu -8 302 1 2194 115 0 3 chr1 16764496 16764792 -265428872 - AluSx SINE Alu -17 295 1 1984 90 105 0 chr1 16764807 16765084 -265428580 - AluSc SINE Alu -1 308 3 509 272 114 5 chr1 16765101 16765285 -265428379 - MIR SINE MIR -6 256 53 267 214 0 0 chr1 16765457 16765513 -265428151 + L2 LINE L2 3257 3312 -1 275 333 0 26 chr1 16765584 16765701 -265427963 + MIR SINE MIR 146 259 -3 21 0 0 0 chr1 16766605 16766626 -265427038 + AT_rich Low_complexity Low_complexity 1 21 0 2267 112 3 10 chr1 16766635 16766949 -265426715 + AluSp SINE Alu 1 312 -1 2149 63 16 94 chr1 16767060 16767378 -265426286 + AluSq SINE Alu 1 293 -20 489 253 47 47 chr1 16767390 16767560 -265426104 + L2 LINE L2 2905 3074 -239 1406 86 6 0 chr1 16767566 16767740 -265425924 + AluSp SINE Alu 1 175 -138 628 0 49 0 chr1 16767746 16767828 -265425836 + (TAAAA)n Simple_repeat Simple_repeat 2 87 0 242 255 20 41 chr1 16767862 16767960 -265425704 + L2 LINE L2 3094 3189 -124 252 314 73 7 chr1 16768125 16768262 -265425402 + MIR SINE MIR 73 218 -44 597 273 82 10 chr1 16768424 16768618 -265425046 - MIR SINE MIR -48 214 7 282 261 171 57 chr1 16768786 16768962 -265424702 + MIR SINE MIR 67 262 0 218 156 22 0 chr1 16769069 16769114 -265424550 + GA-rich Low_complexity Low_complexity 1 46 0 225 0 0 0 chr1 16769427 16769452 -265424212 + (CA)n Simple_repeat Simple_repeat 1 25 0 1393 168 52 4 chr1 16769754 16770004 -265423660 + MER70A LTR ERVL 211 472 0 2123 134 6 22 chr1 16770176 16770350 -265423314 - AluSq SINE Alu -4 309 141 2275 74 36 36 chr1 16770350 16770659 -265423005 - AluSq SINE Alu -4 309 1 2123 134 6 22 chr1 16770659 16770798 -265422866 - AluSq SINE Alu -172 141 1 2435 80 0 3 chr1 16771191 16771492 -265422172 - AluY SINE Alu -7 304 5 1720 144 96 0 chr1 16771496 16771766 -265421898 - AluSx SINE Alu -16 296 1 802 324 96 7 chr1 16771829 16772234 -265421430 - L2 LINE L2 0 3313 2873 474 302 169 17 chr1 16772279 16772580 -265421084 - L2 LINE L2 -713 2601 2255 2254 114 0 3 chr1 16772582 16772888 -265420776 + AluSx SINE Alu 1 305 -7 27 0 0 0 chr1 16772920 16772947 -265420717 + AT_rich Low_complexity Low_complexity 1 27 0 1933 138 10 20 chr1 16773857 16774155 -265419509 + AluJb SINE Alu 1 295 -17 2436 88 7 0 chr1 16774613 16774918 -265418746 - AluSp SINE Alu -6 307 1 216 0 0 0 chr1 16774920 16774944 -265418720 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1872 122 48 0 chr1 16774944 16775214 -265418450 - AluSx SINE Alu -29 283 1 2582 52 0 16 chr1 16775216 16775555 -265418109 - AluY SINE Alu 0 311 1 2135 120 3 10 chr1 16775557 16775715 -265417949 - AluSc SINE Alu -19 290 133 2326 112 3 3 chr1 16775715 16776027 -265417637 - AluSq SINE Alu -1 312 1 2135 120 3 10 chr1 16776027 16776160 -265417504 - AluSc SINE Alu -176 133 1 1534 170 61 11 chr1 16776171 16776448 -265417216 - AluJo SINE Alu -21 291 1 439 228 48 66 chr1 16776633 16776737 -265416927 - L1MC3 LINE L1 -644 7141 7040 2127 117 0 3 chr1 16776737 16777019 -265416645 - AluSg SINE Alu -29 281 1 439 228 48 66 chr1 16777019 16777081 -265416583 - L1MC3 LINE L1 -745 7040 6978 180 0 0 0 chr1 16777081 16777101 -265416563 + (ATTG)n Simple_repeat Simple_repeat 2 21 0 1975 132 4 4 chr1 16777104 16777385 -265416279 - AluSx SINE Alu -31 281 1 482 186 102 17 chr1 16777505 16777623 -265416041 - AluJo SINE Alu -100 212 85 600 120 11 11 chr1 16777641 16777733 -265415931 - AluSq/x SINE Alu -177 135 44 946 220 6 0 chr1 16778607 16778780 -265414884 - AluJo SINE Alu -14 298 125 1365 106 0 6 chr1 16778799 16778979 -265414685 + AluSq SINE Alu 1 179 -134 2471 82 0 19 chr1 16779208 16779524 -265414140 + AluSg SINE Alu 1 310 0 226 203 34 0 chr1 16780611 16780670 -265412994 - L1ME3A LINE L1 -30 6140 6080 2171 121 7 0 chr1 16780696 16780993 -265412671 - AluSx SINE Alu -13 299 1 3076 164 94 38 chr1 16781116 16781849 -265411815 + L1MC3 LINE L1 6088 6861 -924 2253 119 13 0 chr1 16781875 16782178 -265411486 + AluSg SINE Alu 1 307 -3 1904 174 0 10 chr1 16782289 16782599 -265411065 + AluJo SINE Alu 1 307 -5 1870 155 17 10 chr1 16782620 16782917 -265410747 + AluJb SINE Alu 1 299 -13 2409 84 13 0 chr1 16783205 16783503 -265410161 - AluSg SINE Alu -8 302 1 192 273 0 0 chr1 16783767 16783811 -265409853 + L2 LINE L2 3216 3259 -13 863 181 29 23 chr1 16783881 16784052 -265409612 - AluJ SINE Alu -7 305 134 2124 132 37 0 chr1 16784083 16784378 -265409286 - AluSx SINE Alu -6 306 1 1826 154 0 38 chr1 16784403 16784722 -265408942 + AluJo SINE Alu 1 307 -5 2160 201 66 29 chr1 16784778 16785338 -265408326 + L1MC1 LINE L1 4264 4851 -1295 822 171 0 0 chr1 16785338 16785467 -265408197 - AluJ SINE Alu -173 129 1 2160 201 66 29 chr1 16785467 16785524 -265408140 + L1MC1 LINE L1 4851 4904 -1242 858 192 13 0 chr1 16785524 16785680 -265407984 + FAM SINE Alu 1 158 -17 1130 178 13 56 chr1 16785681 16785912 -265407752 - AluJb SINE Alu -7 305 85 2299 116 7 0 chr1 16785927 16786230 -265407434 - AluSx SINE Alu -7 305 1 2376 91 0 38 chr1 16786245 16786564 -265407100 - AluSc SINE Alu -2 307 1 534 284 95 0 chr1 16786579 16786801 -265406863 + L1MC1 LINE L1 4890 5132 -1014 1683 162 0 57 chr1 16786801 16786950 -265406714 + AluJb SINE Alu 1 126 -186 1895 130 9 68 chr1 16786950 16787101 -265406563 + AluSx SINE Alu 1 125 -187 2562 60 3 0 chr1 16787101 16787399 -265406265 + AluY SINE Alu 1 299 -12 1895 130 9 68 chr1 16787399 16787569 -265406095 + AluSx SINE Alu 125 303 -9 1683 162 0 57 chr1 16787569 16787716 -265405948 + AluJb SINE Alu 126 280 -32 776 168 9 106 chr1 16787726 16787900 -265405764 + L1MC1 LINE L1 5127 5276 -870 1104 121 181 107 chr1 16787900 16788181 -265405483 + AluSx SINE Alu 1 302 0 776 168 9 106 chr1 16788181 16788232 -265405432 + L1MC1 LINE L1 5276 5330 -816 974 117 97 0 chr1 16788233 16788378 -265405286 + AluY SINE Alu 136 294 -17 1865 159 19 35 chr1 16788388 16788691 -265404973 + AluJo SINE Alu 1 300 -12 309 51 0 0 chr1 16788691 16788730 -265404934 + (TA)n Simple_repeat Simple_repeat 1 39 0 5633 135 22 31 chr1 16788740 16789264 -265404400 + L1MC1 LINE L1 5323 5851 -482 1627 194 7 17 chr1 16789264 16789558 -265404106 + AluJb SINE Alu 1 291 -21 5633 135 22 31 chr1 16789558 16789975 -265403689 + L1MC1 LINE L1 5851 6256 -77 2107 145 0 0 chr1 16789975 16790279 -265403385 - AluSx SINE Alu -5 307 4 5633 135 22 31 chr1 16790279 16790355 -265403309 + L1MC1 LINE L1 6256 6331 -2 363 320 23 64 chr1 16790452 16790624 -265403040 + HAL1b LINE L1 1 3199 -1183 2142 91 15 0 chr1 16791163 16791437 -265402227 - AluSx SINE Alu -34 278 1 414 299 184 5 chr1 16791566 16791773 -265401891 + MIR SINE MIR 19 262 0 2171 82 0 0 chr1 16791827 16792095 -265401569 + AluY SINE Alu 38 305 -6 2363 109 6 0 chr1 16793076 16793387 -265400277 + AluSp SINE Alu 1 313 0 2548 171 28 2 chr1 16793394 16793851 -265399813 + L1MB2 LINE L1 5580 6048 -123 672 158 118 0 chr1 16793969 16794096 -265399568 - FLAM_C SINE Alu 0 143 2 * 684 143 17 17 chr1 16794096 16794205 -265399459 + AluJo SINE Alu 28 136 -176 1678 184 3 30 chr1 16794212 16794517 -265399147 + AluJb SINE Alu 13 309 -3 844 157 12 6 chr1 16794526 16794692 -265398972 + GA-rich Low_complexity Low_complexity 1 167 0 2591 74 0 0 chr1 16794709 16795020 -265398644 + AluY SINE Alu 1 311 0 3097 172 26 8 chr1 16795023 16795609 -265398055 + L1MD3 LINE L1 7395 7990 -5 2412 113 0 0 chr1 16795664 16795975 -265397689 + AluSx SINE Alu 1 311 -1 1873 147 33 16 chr1 16795995 16796302 -265397362 + AluJb SINE Alu 1 312 0 191 344 39 0 chr1 16796396 16796550 -265397114 - L3 LINE CR1 -235 1342 1183 763 307 144 30 chr1 16796626 16796976 -265396688 + MLT1K LTR MaLR 102 513 -75 2015 119 0 0 chr1 16796985 16797246 -265396418 + AluSq SINE Alu 1 261 -52 1308 197 128 75 chr1 16797246 16797714 -265395950 + MLT1D LTR MaLR 8 503 -2 763 307 144 30 chr1 16797714 16797800 -265395864 + MLT1K LTR MaLR 513 588 0 216 318 76 23 chr1 16798769 16798901 -265394763 - L3b LINE CR1 -101 1482 1344 563 195 64 92 chr1 16799521 16799925 -265393739 + L2 LINE L2 2694 3059 -254 680 209 95 31 chr1 16800024 16800244 -265393420 + MIR SINE MIR 11 245 -17 2250 122 0 3 chr1 16800319 16800613 -265393051 + AluSx SINE Alu 1 293 -19 1069 163 0 0 chr1 16800613 16800779 -265392885 + AluSg/x SINE Alu 135 300 -10 1847 162 7 34 chr1 16800790 16801087 -265392577 + AluJo SINE Alu 1 289 -23 411 237 79 9 chr1 16801296 16801410 -265392254 + MIR SINE MIR 34 155 -107 836 126 0 0 chr1 16802724 16802843 -265390821 - AluSg/x SINE Alu -1 309 191 290 282 91 9 chr1 16802921 16803031 -265390633 + L2 LINE L2 3182 3300 -13 343 306 124 41 chr1 16803440 16803852 -265389812 + L2 LINE L2 2826 3271 -1 932 116 0 0 chr1 16803895 16804024 -265389640 - FLAM_C SINE Alu -4 129 1 228 311 113 19 chr1 16804192 16804298 -265389366 + MIR SINE MIR 141 256 -6 224 293 0 30 chr1 16806384 16806483 -265387181 + C-rich Low_complexity Low_complexity 5 100 0 34 24 0 0 chr1 16806763 16806804 -265386860 + GC_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chr1 16806944 16806966 -265386698 + GC_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr1 16807194 16807218 -265386446 + (TTCA)n Simple_repeat Simple_repeat 2 25 0 303 273 8 61 chr1 16808251 16808383 -265385281 + MIR3 SINE MIR 15 139 -69 813 251 144 0 chr1 16809085 16809300 -265384364 - MIR SINE MIR -3 259 14 471 255 87 43 chr1 16810472 16810656 -265383008 - L2 LINE L2 -61 3211 3020 181 267 22 0 chr1 16810960 16811005 -265382659 + MIR SINE MIR 106 151 -111 393 205 16 118 chr1 16811750 16811877 -265381787 + MIR SINE MIR 30 143 -65 544 216 52 0 chr1 16813319 16813435 -265380229 - MIR SINE MIR -13 249 128 633 155 28 70 chr1 16813437 16813571 -265380093 + MER2 DNA MER2_type 1 130 -215 1892 146 3 7 chr1 16813571 16813919 -265379745 - AluSx SINE Alu 0 312 1 1653 161 0 21 chr1 16813966 16814251 -265379413 - AluJb SINE Alu -32 280 2 474 250 82 10 chr1 16814252 16814460 -265379204 + MER2 DNA MER2_type 122 344 -1 389 244 205 0 chr1 16814478 16814605 -265379059 - MIR SINE MIR -63 199 47 1021 83 8 0 chr1 16814608 16814741 -265378923 + AluSq/x SINE Alu 1 134 -179 2190 102 0 25 chr1 16814744 16815058 -265378606 + AluSg SINE Alu 3 308 -2 2295 57 3 0 chr1 16815278 16815603 -265378061 - AluSp SINE Alu 0 326 1 550 305 49 0 chr1 16816517 16816681 -265376983 - MIR SINE MIR -13 249 78 332 209 124 57 chr1 16816814 16816919 -265376745 - MIR SINE MIR -13 249 138 433 289 87 7 chr1 16818439 16818588 -265375076 - MIR SINE MIR -85 177 17 411 244 152 0 chr1 16818694 16818854 -265374810 - MIR SINE MIR -62 146 12 1178 93 0 0 chr1 16820384 16820534 -265373130 + AluSq/x SINE Alu 1 150 -163 216 341 33 0 chr1 16821178 16821269 -265372395 + (TGGA)n Simple_repeat Simple_repeat 1 94 0 234 339 0 0 chr1 16821342 16821404 -265372260 + (TGGG)n Simple_repeat Simple_repeat 4 65 0 525 188 20 0 chr1 16821435 16821584 -265372080 + (TGGA)n Simple_repeat Simple_repeat 2 153 0 212 100 25 0 chr1 16821625 16821665 -265371999 + (TGGA)n Simple_repeat Simple_repeat 2 42 0 186 103 0 0 chr1 16821715 16821744 -265371920 + (TGGA)n Simple_repeat Simple_repeat 2 30 0 206 152 0 22 chr1 16821789 16821835 -265371829 + (TGGA)n Simple_repeat Simple_repeat 1 45 0 342 293 134 9 chr1 16821837 16822125 -265371539 - L2 LINE L2 0 3313 2933 2068 136 7 0 chr1 16822141 16822450 -265371214 - AluSx SINE Alu 0 312 2 965 131 0 0 chr1 16822451 16822588 -265371076 - AluSq/x SINE Alu -175 137 1 28 38 0 19 chr1 16822593 16822615 -265371049 + AT_rich Low_complexity Low_complexity 1 22 -30 1937 140 0 23 chr1 16822615 16822772 -265370892 - AluSx SINE Alu -19 293 134 378 0 0 0 chr1 16822772 16822814 -265370850 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 1792 100 81 0 chr1 16822814 16823073 -265370591 - AluSc SINE Alu -29 280 1 1937 140 0 23 chr1 16823073 16823214 -265370450 - AluSx SINE Alu -176 136 1 28 38 0 19 chr1 16823214 16823244 -265370420 + AT_rich Low_complexity Low_complexity 22 52 0 1831 153 3 3 chr1 16823244 16823531 -265370133 - AluJo SINE Alu -23 289 3 209 333 16 0 chr1 16823533 16823596 -265370068 + MER91B DNA MER1_type 1 64 -126 295 183 174 17 chr1 16823605 16823720 -265369944 + LTR50 LTR ERVL 645 777 -18 951 264 134 57 chr1 16823786 16824076 -265369588 - L2 LINE L2 -4 3309 3043 2138 109 0 16 chr1 16824076 16824379 -265369285 + AluSx SINE Alu 1 298 -14 951 264 134 57 chr1 16824379 16824765 -265368899 - L2 LINE L2 -270 3043 2537 180 152 0 0 chr1 16824790 16824823 -265368841 + (TGGG)n Simple_repeat Simple_repeat 2 34 0 2227 80 27 0 chr1 16827114 16827414 -265366250 - AluSx SINE Alu -4 308 1 309 275 50 42 chr1 16827571 16827691 -265365973 - MIR SINE MIR -14 248 128 485 250 107 18 chr1 16828532 16828700 -265364964 - MIR SINE MIR -1 261 79 2309 100 0 0 chr1 16828860 16829169 -265364495 - AluSx SINE Alu -1 311 3 918 145 180 30 chr1 16829171 16829371 -265364293 + AluJo SINE Alu 67 296 -16 460 260 0 0 chr1 16829380 16829476 -265364188 - MER45 DNA AcHobo -79 99 4 2020 128 13 3 chr1 16830906 16831210 -265362454 + AluSx SINE Alu 1 307 -5 802 280 85 19 chr1 16831236 16831611 -265362053 + MLT1J1 LTR MaLR 47 446 0 255 269 43 0 chr1 16832544 16832637 -265361027 - MIR3 SINE MIR -25 183 87 185 351 0 0 chr1 16832993 16833050 -265360614 - L2 LINE L2 -79 3193 3137 361 318 57 36 chr1 16833216 16833408 -265360256 - MIR SINE MIR -7 255 60 2141 132 110 27 chr1 16833658 16833976 -265359688 + MSTD LTR MaLR 1 354 -42 2098 108 7 13 chr1 16833976 16834281 -265359383 + AluSx SINE Alu 1 303 -9 2141 132 110 27 chr1 16834281 16834327 -265359337 + MSTD LTR MaLR 354 395 -1 841 146 0 22 chr1 16834392 16834529 -265359135 - FLAM_C SINE Alu -1 142 9 2263 65 31 0 chr1 16834589 16834882 -265358782 - AluSp SINE Alu -11 302 1 611 316 53 16 chr1 16835259 16835503 -265358161 - MIR SINE MIR 0 262 10 2212 94 20 0 chr1 16835534 16835833 -265357831 - AluSq SINE Alu -8 305 1 21 57 0 0 chr1 16835845 16835880 -265357784 + AT_rich Low_complexity Low_complexity 1 35 0 200 308 13 13 chr1 16836145 16836223 -265357441 + MIR SINE MIR 171 248 -14 205 295 16 0 chr1 16837280 16837341 -265356323 + MIR SINE MIR 108 169 -93 201 301 44 44 chr1 16837403 16837516 -265356148 - MIR3 SINE MIR -26 182 70 180 0 0 0 chr1 16837532 16837552 -265356112 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 258 179 125 0 chr1 16837570 16837626 -265356038 - L2 LINE L2 -60 3212 3150 369 228 106 90 chr1 16837862 16838033 -265355631 - MIR SINE MIR -33 229 49 1989 138 10 16 chr1 16838033 16838345 -265355319 + AluJb SINE Alu 1 310 -2 369 228 106 90 chr1 16838345 16838391 -265355273 - MIR SINE MIR -213 49 5 846 144 8 0 chr1 16838891 16839023 -265354641 + AluJb SINE Alu 1 133 -179 1977 94 8 0 chr1 16839026 16839293 -265354371 + AluSx SINE Alu 1 269 -43 2020 84 16 53 chr1 16839303 16839370 -265354294 + MER4A LTR ERV1 356 424 -240 2073 100 0 30 chr1 16839370 16839671 -265353993 - AluSc SINE Alu -17 292 1 2020 84 16 53 chr1 16839671 16839924 -265353740 + MER4A LTR ERV1 424 664 0 1199 173 88 22 chr1 16840015 16840287 -265353377 - MLT1B LTR MaLR 0 390 101 1623 164 3 33 chr1 16840287 16840455 -265353209 - AluJb SINE Alu -13 299 142 2324 89 0 10 chr1 16840455 16840769 -265352895 - AluSq SINE Alu 0 313 3 1623 164 3 33 chr1 16840769 16840904 -265352760 - AluJb SINE Alu -170 142 5 189 0 0 0 chr1 16840917 16840938 -265352726 + (T)n Simple_repeat Simple_repeat 1 21 0 525 133 95 48 chr1 16841327 16841432 -265352232 - MLT1B LTR MaLR -280 110 1 2341 90 0 0 chr1 16841688 16841987 -265351677 - AluSc SINE Alu -10 299 1 213 250 94 0 chr1 16842421 16842485 -265351179 + L2 LINE L2 1887 1956 -1358 190 294 43 33 chr1 16842480 16842572 -265351092 - L2 LINE L2 -854 2460 2368 * 1452 237 30 46 chr1 16843262 16843633 -265350031 + MLT1A1 LTR MaLR 1 365 0 257 343 57 0 chr1 16844505 16844645 -265349019 - MIR SINE MIR -92 170 23 236 310 65 58 chr1 16844650 16844805 -265348859 - L3 LINE CR1 -8 1569 1414 1970 136 10 0 chr1 16845177 16845472 -265348192 - AluSx SINE Alu -14 298 1 348 262 123 0 chr1 16845557 16845679 -265347985 - MIR SINE MIR -25 237 101 1675 157 17 11 chr1 16846072 16846359 -265347305 - AluJb SINE Alu -16 296 8 2207 95 7 0 chr1 16846366 16846660 -265347004 - AluSg SINE Alu -14 296 1 211 273 15 0 chr1 16847260 16847326 -265346338 + GA-rich Low_complexity Low_complexity 5 71 0 183 184 0 0 chr1 16849641 16849679 -265343985 + A-rich Low_complexity Low_complexity 1 38 0 206 32 32 0 chr1 16850327 16850358 -265343306 + (TA)n Simple_repeat Simple_repeat 1 32 0 258 243 68 68 chr1 16851688 16851791 -265341873 - L2 LINE L2 -2 3270 3168 206 359 77 6 chr1 16853796 16853952 -265339712 + MIR SINE MIR 77 243 -19 200 83 0 28 chr1 16854778 16854814 -265338850 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 1937 128 14 0 chr1 16855196 16855477 -265338187 - AluSx SINE Alu -11 301 17 593 211 61 14 chr1 16856838 16856985 -265336679 + MIR SINE MIR 97 250 -12 2122 120 0 0 chr1 16857542 16857834 -265335830 - AluSx SINE Alu -15 297 6 1827 181 7 0 chr1 16858205 16858515 -265335149 - AluJo SINE Alu 0 312 1 1671 182 0 10 chr1 16858591 16858898 -265334766 - AluJo SINE Alu -8 304 1 2099 137 0 6 chr1 16859341 16859654 -265334010 + AluSx SINE Alu 2 312 0 463 242 0 0 chr1 16859781 16859876 -265333788 - MER3 DNA MER1_type -111 98 4 594 201 70 100 chr1 16860019 16860068 -265333596 - MIR SINE MIR -2 260 211 2171 107 3 3 chr1 16860068 16860367 -265333297 - AluSx SINE Alu -13 299 1 594 201 70 100 chr1 16860367 16860546 -265333118 - MIR SINE MIR -51 211 39 1572 176 0 35 chr1 16860547 16860860 -265332804 - AluJo SINE Alu -5 307 6 2102 85 3 29 chr1 16861563 16861870 -265331794 - AluY SINE Alu -12 299 1 203 161 0 0 chr1 16862030 16862061 -265331603 + (TATATG)n Simple_repeat Simple_repeat 5 35 0 680 193 8 0 chr1 16862061 16862180 -265331484 - FLAM_A SINE Alu -13 120 1 1325 146 77 0 chr1 16862287 16862507 -265331157 + AluSx SINE Alu 5 241 -71 1650 144 0 43 chr1 16862559 16862858 -265330806 - AluJb SINE Alu -15 297 12 1824 78 78 8 chr1 16863039 16863307 -265330357 + AluY SINE Alu 1 287 -24 1840 93 4 7 chr1 16863342 16863611 -265330053 + AluSq SINE Alu 45 312 -1 221 0 0 33 chr1 16863615 16863645 -265330019 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2141 119 0 0 chr1 16863666 16863969 -265329695 - AluSq SINE Alu -10 303 1 2125 84 11 0 chr1 16864963 16865249 -265328415 - AluSp SINE Alu -24 289 1 338 285 46 15 chr1 16865314 16865444 -265328220 - MIR SINE MIR -4 258 125 456 201 22 36 chr1 16866028 16866167 -265327497 - LTR37B LTR ERV1 -2 466 330 409 176 0 15 chr1 16866197 16866265 -265327399 + FLAM_A SINE Alu 1 67 -75 1416 104 45 0 chr1 16868540 16868662 -265325002 + AluSp SINE Alu 1 137 -176 204 97 0 0 chr1 16868662 16868693 -265324971 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1416 104 45 0 chr1 16868693 16868772 -265324892 + AluSp SINE Alu 137 211 -102 1269 113 10 15 chr1 16868771 16868966 -265324698 - AluY SINE Alu -116 195 2 * 1627 154 61 11 chr1 16868966 16869245 -265324419 - AluSx SINE Alu -17 295 3 647 165 218 0 chr1 16869247 16869380 -265324284 - AluSg/x SINE Alu -16 296 135 2278 84 3 0 chr1 16869387 16869683 -265323981 - AluSp SINE Alu -16 297 1 1524 176 22 4 chr1 16869692 16870014 -265323650 - AluSx SINE Alu 0 327 1 1030 109 142 6 chr1 16870015 16870198 -265323466 - MSTC LTR MaLR -220 208 1 922 143 0 0 chr1 16870415 16870579 -265323085 + FLAM_C SINE Alu 1 164 0 369 0 0 0 chr1 16870610 16870651 -265323013 + (CA)n Simple_repeat Simple_repeat 2 42 0 634 256 184 40 chr1 16870662 16871079 -265322585 - L2 LINE L2 -19 3294 2791 480 48 0 0 chr1 16871098 16871161 -265322503 + (TG)n Simple_repeat Simple_repeat 2 64 0 2040 91 0 0 chr1 16871174 16871439 -265322225 - AluSq SINE Alu -48 265 1 198 321 35 22 chr1 16871445 16871562 -265322102 + L2 LINE L2 2825 2937 -335 2086 97 3 53 chr1 16871715 16872034 -265321630 + AluSx SINE Alu 1 303 -9 2277 73 3 0 chr1 16872127 16872415 -265321249 - AluSp SINE Alu -22 291 3 197 257 275 18 chr1 16872953 16873062 -265320602 - MIR SINE MIR -62 200 64 1567 223 43 80 chr1 16873339 16873457 -265320207 + L1ME3 LINE L1 5656 5777 -385 1911 135 7 7 chr1 16873457 16873753 -265319911 + AluJb SINE Alu 1 296 -16 1567 223 43 80 chr1 16873753 16873921 -265319743 + L1ME3 LINE L1 5777 5950 -212 1463 175 18 11 chr1 16873921 16874195 -265319469 + AluJo SINE Alu 36 311 -1 1567 223 43 80 chr1 16874195 16874423 -265319241 + L1ME3 LINE L1 5950 6152 -10 2137 103 3 3 chr1 16874447 16874748 -265318916 - AluSc SINE Alu -8 301 1 1552 193 0 22 chr1 16875197 16875513 -265318151 + AluJo SINE Alu 4 312 0 1335 126 192 12 chr1 16875585 16875840 -265317824 + AluSx SINE Alu 1 301 -11 2383 71 3 0 chr1 16875958 16876268 -265317396 + AluY SINE Alu 1 311 0 218 282 14 14 chr1 16876826 16876897 -265316767 + L3b LINE CR1 1174 1244 -339 22 0 0 0 chr1 16877270 16877292 -265316372 + AT_rich Low_complexity Low_complexity 1 22 0 2146 121 3 0 chr1 16877301 16877606 -265316058 + AluSx SINE Alu 1 306 -6 1859 147 0 3 chr1 16877617 16877910 -265315754 + AluJb SINE Alu 1 292 -20 2400 70 3 3 chr1 16877933 16878246 -265315418 + AluSp SINE Alu 1 313 0 2172 81 10 23 chr1 16878624 16878934 -265314730 - AluSp SINE Alu -7 306 1 706 177 39 8 chr1 16879181 16879311 -265314353 + FAM SINE Alu 40 173 -12 2180 153 36 122 chr1 16879605 16879702 -265313962 + L1MC3 LINE L1 7197 7301 -484 1983 137 0 3 chr1 16879702 16880001 -265313663 - AluSx SINE Alu -9 303 6 2180 153 36 122 chr1 16880001 16880347 -265313317 + L1MC3 LINE L1 7301 7634 -151 365 40 40 0 chr1 16880347 16880397 -265313267 + MADE1 DNA Mariner 29 80 0 2180 153 36 122 chr1 16880397 16880483 -265313181 + L1MC3 LINE L1 7634 7726 -59 822 168 13 0 chr1 16880505 16880660 -265313004 + AluJb SINE Alu 154 310 -2 625 254 30 119 chr1 16880672 16880816 -265312848 + MIR SINE MIR 1 112 -150 2288 82 3 3 chr1 16880816 16881120 -265312544 - AluSp SINE Alu -9 304 1 625 254 30 119 chr1 16881120 16881243 -265312421 + MIR SINE MIR 112 244 -18 969 182 6 0 chr1 16881317 16881498 -265312166 - AluSg/x SINE Alu -1 311 130 1793 97 11 128 chr1 16881507 16881858 -265311806 - AluSx SINE Alu -2 310 1 2354 90 0 0 chr1 16882074 16882384 -265311280 - AluSx SINE Alu -2 310 1 713 195 0 0 chr1 16882421 16882539 -265311125 + FLAM_C SINE Alu 1 118 -15 217 291 9 82 chr1 16882545 16882557 -265311107 - MER5A DNA MER1_type -50 139 128 2299 84 0 0 chr1 16882557 16882855 -265310809 + AluSx SINE Alu 1 298 -14 217 291 9 82 chr1 16882855 16882952 -265310712 - MER5A DNA MER1_type -61 128 38 226 350 26 51 chr1 16882989 16883106 -265310558 - MIR3 SINE MIR -48 160 47 2296 80 7 0 chr1 16883353 16883653 -265310011 - AluSg1 SINE Alu -7 302 1 3399 258 153 37 chr1 16884128 16884408 -265309256 + L2 LINE L2 1395 1641 -1672 1797 122 7 24 chr1 16884408 16884544 -265309120 + AluSg SINE Alu 1 138 -177 2179 100 3 7 chr1 16884544 16884854 -265308810 + AluSp SINE Alu 1 309 -4 1797 122 7 24 chr1 16884854 16885037 -265308627 + AluSg SINE Alu 138 315 0 3399 258 153 37 chr1 16885037 16885163 -265308501 + L2 LINE L2 1641 1751 -1562 2036 91 0 0 chr1 16885163 16885426 -265308238 - AluSg SINE Alu -43 267 5 3399 258 153 37 chr1 16885426 16885716 -265307948 + L2 LINE L2 1751 2006 -1307 1267 161 74 74 chr1 16885716 16886027 -265307637 - AluJo SINE Alu -1 311 1 3399 258 153 37 chr1 16886027 16886096 -265307568 + L2 LINE L2 2006 2066 -1247 1937 128 54 35 chr1 16886096 16886464 -265307200 - THE1C LTR MaLR 0 375 1 3399 258 153 37 chr1 16886464 16887401 -265306263 + L2 LINE L2 2066 3313 0 686 125 6 150 chr1 16887447 16887607 -265306057 - FLAM_C SINE Alu -5 138 2 741 120 103 0 chr1 16887661 16887778 -265305886 + AluSq/x SINE Alu 2 130 -183 1379 109 35 5 chr1 16887807 16888016 -265305648 + AluSq SINE Alu 87 288 -328 2127 94 27 0 chr1 16888016 16888313 -265305351 + AluSc SINE Alu 1 305 -4 1379 109 35 5 chr1 16888313 16888331 -265305333 + AluSq SINE Alu 288 616 0 212 353 52 29 chr1 16888398 16888534 -265305130 + L2 LINE L2 2376 2514 -800 1976 147 0 0 chr1 16888534 16888833 -265304831 + AluSx SINE Alu 1 299 -13 1259 195 10 53 chr1 16888980 16889283 -265304381 + AluJo SINE Alu 9 298 -14 187 26 0 79 chr1 16889525 16889563 -265304101 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1120 134 102 5 chr1 16889594 16889780 -265303884 + AluJo SINE Alu 86 289 -23 274 211 263 18 chr1 16889784 16889898 -265303766 + L2 LINE L2 3079 3220 -93 1432 179 53 68 chr1 16890108 16890268 -265303396 + MLT1A2 LTR MaLR 1 162 -212 2087 104 35 0 chr1 16890268 16890556 -265303108 + AluSx SINE Alu 1 298 -14 1432 179 53 68 chr1 16890556 16890775 -265302889 + MLT1A2 LTR MaLR 162 374 0 1773 165 7 3 chr1 16891229 16891538 -265302126 - AluSx SINE Alu 0 312 3 1865 142 3 3 chr1 16891542 16891830 -265301834 - AluJo SINE Alu -24 288 1 198 191 0 0 chr1 16892128 16892170 -265301494 + CT-rich Low_complexity Low_complexity 3 44 0 1226 163 117 32 chr1 16892172 16892455 -265301209 - AluJb SINE Alu -5 307 1 520 204 0 0 chr1 16892770 16892863 -265300801 + AluJ/FRAM SINE Alu 216 308 -4 1703 100 104 0 chr1 16893019 16893279 -265300385 - AluSx SINE Alu -25 287 1 189 0 0 0 chr1 16893285 16893306 -265300358 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 353 333 0 20 chr1 16893691 16893793 -265299871 - MIR SINE MIR -90 118 19 2327 90 0 7 chr1 16895241 16895551 -265298113 - AluSx SINE Alu -4 308 1 198 71 0 0 chr1 16896112 16896140 -265297524 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 2465 71 0 0 chr1 16896228 16896538 -265297126 + AluSg SINE Alu 1 310 0 1920 130 3 20 chr1 16896801 16897102 -265296562 - AluSx SINE Alu -16 296 1 2252 72 0 20 chr1 16897438 16897744 -265295920 + AluY SINE Alu 1 300 -11 2162 97 3 3 chr1 16897802 16898102 -265295562 + AluSx SINE Alu 1 300 -12 2282 88 0 0 chr1 16898372 16898668 -265294996 - AluSx SINE Alu -16 296 1 2215 98 3 3 chr1 16898863 16899169 -265294495 - AluSg SINE Alu -4 306 1 2214 84 0 3 chr1 16899514 16899801 -265293863 - AluSc SINE Alu -23 286 1 2150 105 3 3 chr1 16900752 16901057 -265292607 - AluSx SINE Alu -7 305 1 1986 131 0 25 chr1 16901239 16901559 -265292105 + AluSx SINE Alu 1 312 0 26 30 0 0 chr1 16901655 16901688 -265291976 + AT_rich Low_complexity Low_complexity 1 33 0 372 175 0 0 chr1 16901691 16901748 -265291916 - AluJ/FLAM SINE Alu -202 100 44 228 313 36 36 chr1 16901759 16901871 -265291793 - MIR SINE MIR -56 206 95 537 210 36 58 chr1 16902120 16902175 -265291489 + AluJo SINE Alu 2 57 -255 1821 136 53 56 chr1 16902175 16902372 -265291292 - THE1C LTR MaLR 0 375 178 2185 98 0 0 chr1 16902372 16902668 -265290996 - AluSx SINE Alu -16 296 1 1821 136 53 56 chr1 16902668 16902845 -265290819 - THE1C LTR MaLR -197 178 2 537 210 36 58 chr1 16902845 16902927 -265290737 + AluJo SINE Alu 57 136 -176 365 259 46 0 chr1 16903151 16903259 -265290405 - MER20 DNA MER1_type 0 219 107 2185 87 0 42 chr1 16903427 16903602 -265290062 - AluSq SINE Alu -14 299 141 1484 89 9 36 chr1 16903602 16903827 -265289837 - AluY SINE Alu -10 301 83 2185 87 0 42 chr1 16903827 16903963 -265289701 - AluSq SINE Alu -172 141 1 2066 115 7 13 chr1 16903972 16904277 -265289387 - AluSq SINE Alu -10 303 1 2152 99 14 0 chr1 16904545 16904837 -265288827 + AluSx SINE Alu 1 296 -16 1743 169 0 10 chr1 16904961 16905262 -265288402 + AluJo SINE Alu 1 298 -14 1713 155 17 10 chr1 16905292 16905589 -265288075 + AluJb SINE Alu 1 299 -13 2252 84 13 0 chr1 16905877 16906175 -265287489 - AluSg SINE Alu -8 302 1 209 273 0 0 chr1 16906439 16906483 -265287181 + L2 LINE L2 3216 3259 -13 853 181 29 23 chr1 16906553 16906724 -265286940 - AluJ SINE Alu -7 305 134 1967 132 37 0 chr1 16906755 16907050 -265286614 - AluSx SINE Alu -6 306 1 1666 154 0 38 chr1 16907075 16907394 -265286270 + AluJo SINE Alu 1 307 -5 2259 197 66 29 chr1 16907450 16908010 -265285654 + L1MC1 LINE L1 4264 4851 -1295 852 155 0 16 chr1 16908010 16908139 -265285525 - AluJ SINE Alu -175 127 1 2259 197 66 29 chr1 16908139 16908196 -265285468 + L1MC1 LINE L1 4851 4904 -1242 896 192 13 0 chr1 16908196 16908352 -265285312 + FAM SINE Alu 1 158 -17 1017 178 13 56 chr1 16908353 16908584 -265285080 - AluJb SINE Alu -7 305 85 2133 116 7 0 chr1 16908599 16908901 -265284763 - AluSx SINE Alu -8 304 1 2218 91 0 38 chr1 16908916 16909235 -265284429 - AluSc SINE Alu -2 307 1 557 267 104 0 chr1 16909251 16909472 -265284192 + L1MC1 LINE L1 4889 5132 -1014 1532 162 0 57 chr1 16909472 16909621 -265284043 + AluJb SINE Alu 1 126 -186 1737 130 9 68 chr1 16909621 16909772 -265283892 + AluSx SINE Alu 1 125 -187 2406 60 3 0 chr1 16909772 16910070 -265283594 + AluY SINE Alu 1 299 -12 1737 130 9 68 chr1 16910070 16910240 -265283424 + AluSx SINE Alu 125 303 -9 1532 162 0 57 chr1 16910240 16910387 -265283277 + AluJb SINE Alu 126 280 -32 818 158 9 108 chr1 16910397 16910571 -265283093 + L1MC1 LINE L1 5127 5276 -870 1181 121 181 107 chr1 16910571 16910852 -265282812 + AluSx SINE Alu 1 302 0 818 158 9 108 chr1 16910852 16910899 -265282765 + L1MC1 LINE L1 5276 5326 -820 896 117 97 0 chr1 16910904 16911049 -265282615 + AluY SINE Alu 136 294 -17 1865 159 19 35 chr1 16911059 16911362 -265282302 + AluJo SINE Alu 1 300 -12 309 51 0 0 chr1 16911362 16911401 -265282263 + (TA)n Simple_repeat Simple_repeat 2 40 0 5633 135 22 31 chr1 16911411 16911935 -265281729 + L1MC1 LINE L1 5323 5851 -482 1627 194 7 17 chr1 16911935 16912229 -265281435 + AluJb SINE Alu 1 291 -21 5633 135 22 31 chr1 16912229 16912646 -265281018 + L1MC1 LINE L1 5851 6256 -77 2107 145 0 0 chr1 16912646 16912950 -265280714 - AluSx SINE Alu -5 307 4 5633 135 22 31 chr1 16912950 16913026 -265280638 + L1MC1 LINE L1 6256 6331 -2 363 320 23 64 chr1 16913123 16913295 -265280369 + HAL1b LINE L1 1 3199 -1183 2142 91 15 0 chr1 16913834 16914108 -265279556 - AluSx SINE Alu -34 278 1 414 299 184 5 chr1 16914237 16914444 -265279220 + MIR SINE MIR 19 262 0 2171 82 0 0 chr1 16914498 16914766 -265278898 + AluY SINE Alu 38 305 -6 2394 103 6 0 chr1 16915747 16916058 -265277606 + AluSp SINE Alu 1 313 0 1342 130 10 5 chr1 16916103 16916310 -265277354 + MER75 DNA T2_type 1 208 -306 1769 119 4 0 chr1 16916311 16916547 -265277117 + AluSx SINE Alu 1 237 -75 357 326 91 11 chr1 16916755 16916930 -265276734 - MIR3 SINE MIR -4 204 16 731 257 88 4 chr1 16916982 16917231 -265276433 + L1MC4a LINE L1 5742 6011 -1797 2275 108 0 25 chr1 16917312 16917627 -265276037 + AluSg SINE Alu 1 307 -3 2391 83 3 3 chr1 16917681 16917981 -265275683 + AluSp SINE Alu 1 300 -13 1688 176 10 20 chr1 16917987 16918107 -265275557 + AluJb SINE Alu 1 121 -191 2549 76 3 0 chr1 16918107 16918410 -265275254 + AluSp SINE Alu 1 304 -9 1688 176 10 20 chr1 16918410 16918591 -265275073 + AluJb SINE Alu 121 299 -13 1145 108 48 0 chr1 16918675 16918861 -265274803 + MSTB2 LTR MaLR 1 195 -262 245 206 32 16 chr1 16919077 16919140 -265274524 + MER5B DNA MER1_type 1 64 -114 547 238 8 0 chr1 16919179 16919301 -265274363 - FLAM_C SINE Alu -19 124 2 2062 133 0 0 chr1 16919314 16919600 -265274064 - AluSx SINE Alu 0 312 27 912 130 34 7 chr1 16919610 16919756 -265273908 - FRAM SINE Alu -2 174 25 264 143 0 0 chr1 16919760 16919802 -265273862 + FRAM/FAM SINE Alu 32 73 -102 2127 113 10 10 chr1 16919927 16920227 -265273437 - AluSx SINE Alu -12 300 1 2441 79 3 19 chr1 16920383 16920698 -265272966 - AluSp SINE Alu -3 310 1 1642 188 10 7 chr1 16920803 16921101 -265272563 - AluJo SINE Alu -13 299 1 2484 131 58 94 chr1 16921232 16921400 -265272264 - MER4B LTR ERV1 -36 574 402 2180 118 7 0 chr1 16921400 16921696 -265271968 + AluSx SINE Alu 1 298 -14 2013 93 0 73 chr1 16921696 16922043 -265271621 + AluSg SINE Alu 1 325 0 2484 131 58 94 chr1 16922043 16922156 -265271508 - MER4B LTR ERV1 -207 403 288 1847 166 0 7 chr1 16922156 16922452 -265271212 + AluJb SINE Alu 1 294 -18 2484 131 58 94 chr1 16922452 16922733 -265270931 - MER4B LTR ERV1 -322 288 29 1795 122 8 0 chr1 16922833 16923110 -265270554 + AluSx SINE Alu 35 313 0 1083 95 0 0 chr1 16923138 16923275 -265270389 + AluSq/x SINE Alu 1 137 -175 2353 90 3 16 chr1 16923276 16923588 -265270076 + AluY SINE Alu 4 311 0 2232 98 3 16 chr1 16923983 16924290 -265269374 + AluSg SINE Alu 2 304 -6 212 289 0 0 chr1 16924802 16924854 -265268810 + L2 LINE L2 3030 3081 -191 2207 105 17 3 chr1 16925144 16925439 -265268225 + AluSq SINE Alu 1 299 -14 1466 121 77 73 chr1 16926030 16926302 -265267362 + AluSx SINE Alu 1 273 -39 612 40 0 0 chr1 16926309 16926384 -265267280 + (GAAA)n Simple_repeat Simple_repeat 2 76 0 24 32 0 0 chr1 16928077 16928108 -265265556 + GC_rich Low_complexity Low_complexity 1 31 0 398 216 74 19 chr1 16928477 16928593 -265265071 - MIR SINE MIR -62 146 59 1060 135 0 0 chr1 16928725 16928866 -265264798 + AluJb SINE Alu 136 276 -36 467 296 122 14 chr1 16929201 16929414 -265264250 + MLT1K LTR MaLR 306 541 -47 1075 81 0 0 chr1 16929423 16929559 -265264105 - AluSg/x SINE Alu 0 310 175 2268 100 0 7 chr1 16930148 16930447 -265263217 + AluSx SINE Alu 15 311 -1 1670 190 28 0 chr1 16930485 16930774 -265262890 + AluJb SINE Alu 5 301 -11 529 226 10 0 chr1 16930777 16930879 -265262785 - MER45 DNA AcHobo -937 103 1 1412 143 0 28 chr1 16931167 16931383 -265262281 + AluSx SINE Alu 2 211 -101 761 188 0 83 chr1 16931384 16931602 -265262062 + AluJo SINE Alu 78 277 -35 289 248 239 0 chr1 16931816 16931929 -265261735 + MIR SINE MIR 98 237 -25 1137 157 0 0 chr1 16932058 16932230 -265261434 - AluSg/x SINE Alu -4 306 135 1583 149 33 83 chr1 16932260 16932407 -265261257 + MLT1B LTR MaLR 32 185 -205 1651 198 10 7 chr1 16932407 16932710 -265260954 + AluJo SINE Alu 1 304 -8 1583 149 33 83 chr1 16932710 16932924 -265260740 + MLT1B LTR MaLR 185 375 -15 2269 92 0 0 chr1 16933387 16933702 -265259962 - AluSg SINE Alu 0 317 3 1973 164 0 3 chr1 16933715 16934013 -265259651 - AluJo SINE Alu -15 297 1 2423 87 10 0 chr1 16934537 16934836 -265258828 + AluSx SINE Alu 1 302 -10 2077 117 3 20 chr1 16936199 16936361 -265257303 - AluJb SINE Alu -19 293 137 2241 125 0 0 chr1 16936361 16936657 -265257007 - AluSx SINE Alu -16 296 1 2077 117 3 20 chr1 16936657 16936792 -265256872 - AluJb SINE Alu -175 137 1 216 256 11 67 chr1 16936836 16936926 -265256738 + L2 LINE L2 3167 3251 -62 825 257 237 40 chr1 16937020 16937138 -265256526 + L2 LINE L2 1573 1666 -1648 1703 167 11 14 chr1 16937138 16937420 -265256244 - AluJo SINE Alu -21 291 11 825 257 237 40 chr1 16937420 16937455 -265256209 + L2 LINE L2 1666 1693 -1621 2270 93 0 0 chr1 16937455 16937769 -265255895 + AluY SINE Alu 1 314 0 825 257 237 40 chr1 16937769 16938367 -265255297 + L2 LINE L2 1693 2475 -839 2270 124 0 0 chr1 16938411 16938709 -265254955 - AluSx SINE Alu -14 298 1 2014 110 26 4 chr1 16938729 16939028 -265254636 - AluSc SINE Alu 0 305 1 317 87 0 0 chr1 16939033 16939079 -265254585 - FLAM SINE Alu -6 127 82 2602 167 28 2 chr1 16939079 16939540 -265254124 - L1MB2 LINE L1 -119 6052 5580 2340 119 3 0 chr1 16939547 16939857 -265253807 - AluSp SINE Alu 0 313 3 661 125 0 0 chr1 16939957 16940069 -265253595 + AluSp/q SINE Alu 202 313 0 321 314 0 39 chr1 16940359 16940461 -265253203 + L2 LINE L2 3214 3311 -2 193 339 34 0 chr1 16940601 16940660 -265253004 - L2 LINE L2 -220 3052 2992 1823 156 0 4 chr1 16940732 16941007 -265252657 + AluJo SINE Alu 9 282 -30 346 339 36 18 chr1 16941027 16941192 -265252472 - MIR SINE MIR 0 262 95 501 187 98 8 chr1 16941217 16941340 -265252324 - MIR3 SINE MIR -60 148 15 378 251 192 30 chr1 16941901 16942005 -265251659 - MIR SINE MIR -14 248 162 2280 92 34 0 chr1 16942005 16942298 -265251366 + AluSq SINE Alu 3 305 -8 378 251 192 30 chr1 16942298 16942396 -265251268 - MIR SINE MIR -100 162 13 180 320 0 0 chr1 16942426 16942476 -265251188 - MIR SINE MIR -12 250 201 567 296 73 15 chr1 16942551 16942757 -265250907 - MIR SINE MIR -21 241 24 252 130 0 0 chr1 16944474 16944520 -265249144 + (CAGGG)n Simple_repeat Simple_repeat 3 48 0 2101 131 0 0 chr1 16947342 16947624 -265246040 - AluSx SINE Alu -6 306 25 202 277 51 90 chr1 16948027 16948204 -265245460 + L3 LINE CR1 1183 1352 -225 478 279 6 31 chr1 16948350 16948511 -265245153 - MIR SINE MIR -4 258 102 412 321 24 6 chr1 16950474 16950639 -265243025 - MIR3 SINE MIR -3 205 38 253 284 0 0 chr1 16951314 16951381 -265242283 + L2 LINE L2 2703 2769 -545 258 236 118 27 chr1 16951456 16951566 -265242098 + L2 LINE L2 2941 3060 -212 567 218 271 0 chr1 16952245 16952415 -265241249 + MER20 DNA MER1_type 3 218 -1 249 318 47 0 chr1 16952490 16952575 -265241089 - L1MEc LINE L1 -3382 2833 2745 2090 54 70 0 chr1 16952576 16952710 -265240954 + AluY SINE Alu 1 124 -187 1518 60 0 50 chr1 16952710 16952911 -265240753 + AluY SINE Alu 1 191 -120 2090 54 70 0 chr1 16952911 16953035 -265240629 + AluY SINE Alu 124 277 -34 1660 69 10 0 chr1 16953045 16953249 -265240415 + AluY SINE Alu 105 310 -1 580 130 4 5 chr1 16953383 16953645 -265240019 + AluSx SINE Alu 10 309 -3 423 277 194 29 chr1 16953646 16953916 -265239748 - L1MEc LINE L1 -3709 2519 2263 2032 101 50 22 chr1 16953916 16954194 -265239470 + AluSx SINE Alu 1 286 -26 423 277 194 29 chr1 16954194 16954218 -265239446 - L1MEc LINE L1 -3965 2263 2244 252 263 162 22 chr1 16955243 16955378 -265238286 - MIR SINE MIR -69 193 40 736 136 23 15 chr1 16957931 16958063 -265235601 - FLAM_C SINE Alu 0 133 1 248 125 6 194 chr1 16958334 16958405 -265235259 + Charlie5 DNA MER1_type 2456 2482 -142 2571 77 0 0 chr1 16958405 16958715 -265234949 + AluSg SINE Alu 1 310 0 248 125 6 194 chr1 16958715 16958803 -265234861 + Charlie5 DNA MER1_type 2482 2585 -39 1791 184 10 10 chr1 16958804 16959173 -265234491 + AluJo SINE Alu 1 369 0 1871 119 0 4 chr1 16959193 16959454 -265234210 + AluSx SINE Alu 37 296 -16 2220 111 7 3 chr1 16959533 16959830 -265233834 + AluSx SINE Alu 6 303 -9 2365 101 3 0 chr1 16959836 16960134 -265233530 + AluSx SINE Alu 1 299 -13 2306 100 3 10 chr1 16960490 16960800 -265232864 - AluSx SINE Alu -4 308 1 2723 148 58 0 chr1 16960855 16961403 -265232261 - L1MB4 LINE L1 -1 6179 5600 979 164 0 0 chr1 16961406 16961576 -265232088 - AluJb SINE Alu 0 306 137 481 198 121 0 chr1 16961578 16961694 -265231970 - L1MB4 LINE L1 -575 5605 5476 1898 149 0 49 chr1 16961698 16962026 -265231638 - AluJo SINE Alu 0 312 1 2308 106 7 0 chr1 16962037 16962330 -265231334 - AluSx SINE Alu -17 295 1 323 287 52 108 chr1 16962352 16962603 -265231061 - L2 LINE L2 -5 3267 3031 374 78 62 0 chr1 16963147 16963211 -265230453 + L1MB8 LINE L1 4674 4741 -1405 222 37 0 0 chr1 16963211 16963238 -265230426 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 619 116 0 130 chr1 16963238 16963292 -265230372 - L1PB1 LINE L1 -9 6142 6083 2163 118 0 37 chr1 16963292 16963615 -265230049 - AluSx SINE Alu 0 312 2 619 116 0 130 chr1 16963615 16963695 -265229969 - L1PB1 LINE L1 -68 6083 6026 2259 113 3 3 chr1 16963695 16963995 -265229669 - AluSx SINE Alu -12 300 1 1003 89 0 0 chr1 16964005 16964129 -265229535 - AluSg SINE Alu -186 124 1 706 191 64 5 chr1 16964129 16964317 -265229347 + L1MB8 LINE L1 5134 5332 -814 794 218 6 0 chr1 16964320 16964476 -265229188 + FRAM SINE Alu 1 157 -9 2143 131 0 0 chr1 16964482 16964773 -265228891 + AluSx SINE Alu 1 291 -21 1693 144 0 0 chr1 16965592 16965835 -265227829 + AluSx SINE Alu 50 292 -20 4594 159 9 31 chr1 16965835 16966008 -265227656 + L1MB8 LINE L1 5324 5499 -679 1777 179 4 0 chr1 16966008 16966309 -265227355 + AluJo SINE Alu 6 307 0 4594 159 9 31 chr1 16966309 16966565 -265227099 + L1MB8 LINE L1 5499 5759 -419 1900 156 9 40 chr1 16966565 16966886 -265226778 + AluJo SINE Alu 1 311 -1 4594 159 9 31 chr1 16966886 16967328 -265226336 + L1MB8 LINE L1 5759 6178 0 370 293 93 21 chr1 16968132 16968272 -265225392 + MIR SINE MIR 35 184 -78 2415 97 0 0 chr1 16968739 16969081 -265224583 + AluSx SINE Alu 1 342 0 435 245 9 0 chr1 16969253 16969359 -265224305 - MER103 DNA DNA -58 108 2 228 309 36 18 chr1 16969425 16969535 -265224129 + MIR SINE MIR 20 132 -76 1199 234 134 45 chr1 16970004 16970474 -265223190 - MLT1K LTR MaLR -4 584 73 1998 139 0 17 chr1 16970697 16971014 -265222650 - AluJb SINE Alu 0 313 2 643 119 28 0 chr1 16971017 16971126 -265222538 - AluSg/x SINE Alu -1 308 197 685 173 22 103 chr1 16971233 16971303 -265222361 - AluJo SINE Alu -139 173 99 1832 152 20 27 chr1 16971303 16971442 -265222222 + AluSx SINE Alu 1 139 -173 2270 100 3 10 chr1 16971442 16971743 -265221921 + AluSp SINE Alu 1 299 -14 1832 152 20 27 chr1 16971743 16971900 -265221764 + AluSx SINE Alu 139 295 -17 685 173 22 103 chr1 16971900 16972014 -265221650 - AluJo SINE Alu -213 99 4 272 322 185 0 chr1 16972067 16972213 -265221451 + L2 LINE L2 3103 3275 -38 1765 78 0 5 chr1 16972230 16972448 -265221216 + AluSg/x SINE Alu 84 300 -12 375 276 26 26 chr1 16972475 16972591 -265221073 - MIR SINE MIR -114 148 33 2224 68 57 0 chr1 16972806 16973086 -265220578 + AluY SINE Alu 1 296 -15 2110 115 35 0 chr1 16973182 16973470 -265220194 + AluSx SINE Alu 1 298 -14 2197 104 7 13 chr1 16973627 16973926 -265219738 + AluSx SINE Alu 7 303 -9 198 279 108 36 chr1 16974418 16974529 -265219135 - MIR SINE MIR -53 209 91 1824 129 79 7 chr1 16974619 16974897 -265218767 - AluSx SINE Alu -3 309 12 419 202 9 61 chr1 16975237 16975351 -265218313 + FLAM_A SINE Alu 1 108 -34 2371 103 0 0 chr1 16975384 16975685 -265217979 - AluSx SINE Alu -11 301 1 2054 121 14 3 chr1 16976596 16976893 -265216771 + AluSx SINE Alu 1 300 -12 2424 92 0 0 chr1 16977033 16977336 -265216328 + AluSg SINE Alu 1 303 -7 27 0 0 0 chr1 16977368 16977395 -265216269 + AT_rich Low_complexity Low_complexity 1 27 0 1457 94 6 0 chr1 16977832 16978012 -265215652 - AluSp SINE Alu -131 182 2 231 295 40 96 chr1 16978018 16978393 -265215271 + L2 LINE L2 2699 3053 -219 2356 90 0 0 chr1 16978829 16979119 -265214545 - AluSx SINE Alu -21 291 2 198 103 0 0 chr1 16979172 16979201 -265214463 + (A)n Simple_repeat Simple_repeat 1 29 0 728 160 160 80 chr1 16979365 16979550 -265214114 + AluJo SINE Alu 85 289 -23 2641 68 0 0 chr1 16979550 16979861 -265213803 + AluY SINE Alu 1 311 0 728 160 160 80 chr1 16979861 16979875 -265213789 + AluJo SINE Alu 289 300 -12 187 137 20 20 chr1 16979876 16979927 -265213737 + G-rich Low_complexity Low_complexity 1 51 0 818 159 34 51 chr1 16979943 16980119 -265213545 + FRAM SINE Alu 1 164 -12 851 219 17 6 chr1 16980491 16980669 -265212995 + AluJo SINE Alu 116 295 -17 30 0 0 0 chr1 16980754 16980784 -265212880 + AT_rich Low_complexity Low_complexity 1 30 0 2266 125 0 3 chr1 16980784 16981095 -265212569 + AluSx SINE Alu 1 310 -2 402 234 73 16 chr1 16981145 16981282 -265212382 + MIR SINE MIR 4 146 -62 2299 115 7 0 chr1 16981432 16981737 -265211927 - AluSq SINE Alu -6 307 1 274 189 19 0 chr1 16982649 16982702 -265210962 + L2 LINE L2 3217 3270 -2 2480 78 0 0 chr1 16984750 16985046 -265208618 + AluSx SINE Alu 1 296 -16 2196 108 14 0 chr1 16985058 16985345 -265208319 + AluSp SINE Alu 1 291 -22 837 126 0 15 chr1 16985356 16985491 -265208173 + FLAM_C SINE Alu 1 133 0 515 266 75 17 chr1 16985491 16985664 -265208000 + MIR SINE MIR 79 261 -1 2209 110 4 0 chr1 16985752 16986065 -265207599 + AluSx SINE Alu 2 315 0 656 272 67 20 chr1 16986072 16986267 -265207397 + MIR SINE MIR 53 256 -6 195 235 145 19 chr1 16986750 16986843 -265206821 + MIR SINE MIR 10 107 -102 402 167 0 0 chr1 16986843 16986915 -265206749 - AluSx SINE Alu -8 302 231 1582 81 0 0 chr1 16986915 16987101 -265206563 - AluSx SINE Alu -126 186 1 202 298 0 0 chr1 16987109 16987166 -265206498 + MIR SINE MIR 132 188 -74 262 211 41 14 chr1 16988062 16988209 -265205455 + GA-rich Low_complexity Low_complexity 4 154 0 446 275 14 63 chr1 16988620 16988827 -265204837 + MIR SINE MIR 60 256 -6 2420 105 0 0 chr1 16988860 16989164 -265204500 + AluSp SINE Alu 2 305 -8 368 179 45 167 chr1 16989255 16989411 -265204253 + MIR SINE MIR 12 148 -114 1177 73 0 0 chr1 16989416 16989552 -265204112 + AluSq/x SINE Alu 1 136 -176 1558 82 0 0 chr1 16989552 16989736 -265203928 + AluSc SINE Alu 21 204 -105 1148 144 80 5 chr1 16989964 16989998 -265203666 + AluSg/x SINE Alu 83 113 -195 396 0 0 0 chr1 16989998 16990042 -265203622 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 1148 144 80 5 chr1 16990042 16990219 -265203445 + AluSg/x SINE Alu 113 308 0 838 148 0 15 chr1 16990226 16990361 -265203303 + FLAM_C SINE Alu 1 133 0 844 194 0 7 chr1 16990461 16990616 -265203048 + LTR2B LTR ERV1 337 490 0 264 205 42 66 chr1 16990698 16990798 -265202866 - MIR SINE MIR -43 165 63 2220 129 7 0 chr1 16991071 16991374 -265202290 + AluSx SINE Alu 1 305 -7 189 0 0 0 chr1 16991782 16991803 -265201861 + (A)n Simple_repeat Simple_repeat 1 21 0 627 227 74 51 chr1 16991850 16992029 -265201635 + MIR SINE MIR 42 228 -34 730 285 119 17 chr1 16992029 16992433 -265201231 + MLT1J1 LTR MaLR 1 445 -1 627 227 74 51 chr1 16992433 16992469 -265201195 + MIR SINE MIR 228 262 0 194 417 0 9 chr1 16992842 16992957 -265200707 - MIR SINE MIR -118 144 31 2347 95 0 0 chr1 16992960 16993282 -265200382 - AluSx SINE Alu 0 322 1 911 203 35 26 chr1 16993384 16993844 -265199820 + L1ME LINE L1 5129 5698 -466 2183 111 7 3 chr1 16993851 16994192 -265199472 + AluSp SINE Alu 1 313 0 690 172 16 0 chr1 16994195 16994323 -265199341 + AluJo/FLAM SINE Alu 1 130 -182 1141 78 26 0 chr1 16994323 16994476 -265199188 + BC200 scRNA scRNA 2 158 -42 233 261 0 14 chr1 16994651 16994720 -265198944 + MIR SINE MIR 59 126 -82 1828 140 49 0 chr1 16994950 16995235 -265198429 + AluSx SINE Alu 1 299 -13 290 269 0 0 chr1 16996018 16996085 -265197579 + L2 LINE L2 3247 3313 0 548 273 72 64 chr1 16996382 16996741 -265196923 + L1ME4a LINE L1 5526 5887 -234 2305 114 3 0 chr1 16996746 16997043 -265196621 + AluSq SINE Alu 1 298 -15 225 0 0 0 chr1 16997043 16997068 -265196596 + (TA)n Simple_repeat Simple_repeat 1 25 0 1986 160 0 0 chr1 16997068 16997374 -265196290 + AluJb SINE Alu 2 307 0 183 240 0 40 chr1 16997466 16997516 -265196148 + MIR SINE MIR 78 125 -137 817 160 8 0 chr1 16997578 16997703 -265195961 + FLAM_C SINE Alu 1 126 -17 824 130 8 8 chr1 16998189 16998312 -265195352 + FRAM SINE Alu 9 131 -45 2131 109 30 7 chr1 16998414 16998717 -265194947 + AluSq SINE Alu 1 310 -3 255 228 13 25 chr1 16998781 16998860 -265194804 + MER103 DNA DNA 2 79 -87 2117 177 35 17 chr1 16999022 16999424 -265194240 + MER70A LTR ERVL 64 472 0 2123 134 6 22 chr1 16999596 16999770 -265193894 - AluSq SINE Alu -4 309 141 2275 74 36 36 chr1 16999770 17000079 -265193585 - AluSq SINE Alu -4 309 1 2123 134 6 22 chr1 17000079 17000218 -265193446 - AluSq SINE Alu -172 141 1 2419 83 0 3 chr1 17000611 17000912 -265192752 - AluY SINE Alu -7 304 5 1720 144 96 0 chr1 17000916 17001186 -265192478 - AluSx SINE Alu -16 296 1 802 324 96 7 chr1 17001249 17001654 -265192010 - L2 LINE L2 0 3313 2873 911 276 213 25 chr1 17001699 17002002 -265191662 - L2 LINE L2 -713 2601 2356 2147 112 14 10 chr1 17002002 17002296 -265191368 + AluSx SINE Alu 1 295 -17 911 276 213 25 chr1 17002296 17002709 -265190955 - L2 LINE L2 -958 2356 1750 1021 144 69 0 chr1 17002722 17002882 -265190782 + AluJb SINE Alu 137 307 -5 274 277 305 20 chr1 17002911 17003406 -265190258 - L2 LINE L2 -1637 1677 1042 207 167 0 0 chr1 17003643 17003685 -265189979 + (CA)n Simple_repeat Simple_repeat 2 43 0 324 283 47 0 chr1 17004097 17004203 -265189461 - MIR SINE MIR -65 143 33 311 301 118 20 chr1 17004620 17004773 -265188891 - MIR SINE MIR -12 250 83 2021 148 3 7 chr1 17004853 17005151 -265188513 - AluJo SINE Alu -15 297 1 1838 153 27 17 chr1 17005224 17005518 -265188146 + AluSx SINE Alu 1 297 -15 1914 131 0 0 chr1 17005518 17005777 -265187887 + AluSx SINE Alu 44 303 -9 232 146 0 21 chr1 17005784 17005832 -265187832 + L1ME LINE L1 5772 5818 -348 1510 146 0 0 chr1 17006032 17006251 -265187413 + AluSg/x SINE Alu 82 300 -12 188 0 74 0 chr1 17006297 17006324 -265187340 + (TTTAA)n Simple_repeat Simple_repeat 3 31 0 505 184 0 29 chr1 17006324 17006418 -265187246 - AluJ SINE Alu -22 290 198 931 191 31 10 chr1 17006528 17006722 -265186942 - AluJ SINE Alu -114 198 1 432 116 14 0 chr1 17006871 17006940 -265186724 - MSTD LTR MaLR 0 396 327 450 0 0 0 chr1 17007434 17007484 -265186180 + (GA)n Simple_repeat Simple_repeat 1 50 0 2562 64 0 0 chr1 17007656 17007954 -265185710 - AluY SINE Alu -13 298 1 2185 118 0 10 chr1 17007958 17008262 -265185402 - AluSx SINE Alu -11 301 1 227 283 28 47 chr1 17008281 17008387 -265185277 - L2 LINE L2 -78 3235 3132 281 279 0 0 chr1 17008453 17008521 -265185143 - MIR SINE MIR -89 173 106 575 144 52 0 chr1 17008753 17008850 -265184814 + MER7A DNA MER2_type 1 100 -246 2094 98 3 60 chr1 17008857 17009023 -265184641 - AluSx SINE Alu -12 300 159 2268 125 0 3 chr1 17009023 17009382 -265184282 - AluSx SINE Alu 0 312 1 2094 98 3 60 chr1 17009382 17009533 -265184131 - AluSx SINE Alu -153 159 1 2348 86 27 0 chr1 17009543 17009844 -265183820 - AluY SINE Alu -2 309 1 1530 50 0 0 chr1 17009985 17009995 -265183669 + (C)n Simple_repeat Simple_repeat 1 190 0 1530 50 0 0 chr1 17009995 17010175 -265183489 + (C)n Simple_repeat Simple_repeat 1 180 0 225 239 9 28 chr1 17010590 17010699 -265182965 + A-rich Low_complexity Low_complexity 1 107 0 2251 95 7 0 chr1 17010797 17011092 -265182572 + AluSx SINE Alu 1 297 -15 2475 76 0 3 chr1 17011095 17011398 -265182266 + AluY SINE Alu 3 304 -7 289 294 64 18 chr1 17012238 17012347 -265181317 - MIR SINE MIR -91 171 58 204 250 0 0 chr1 17012348 17012396 -265181268 + (TAA)n Simple_repeat Simple_repeat 3 50 0 898 259 81 0 chr1 17012417 17012653 -265181011 - MIR SINE MIR 0 262 8 357 238 152 0 chr1 17012740 17012790 -265180874 - MIR SINE MIR -31 231 190 2129 108 0 0 chr1 17012790 17013086 -265180578 + AluSx SINE Alu 1 296 -16 357 238 152 0 chr1 17013086 17013140 -265180524 - MIR SINE MIR -72 190 111 275 253 0 24 chr1 17014319 17014402 -265179262 + (TCTCTG)n Simple_repeat Simple_repeat 3 83 0 435 205 82 16 chr1 17014910 17015032 -265178632 + MIR SINE MIR 16 145 -117 2024 88 29 0 chr1 17015034 17015358 -265178306 + AluSx SINE Alu 1 332 0 1402 147 4 0 chr1 17015670 17015908 -265177756 - AluSg/x SINE Alu -4 308 70 837 195 0 19 chr1 17016011 17016165 -265177499 - AluJo SINE Alu -160 152 2 228 163 0 0 chr1 17016372 17016415 -265177249 + T-rich Low_complexity Low_complexity 1 43 0 2223 107 0 0 chr1 17016449 17016758 -265176906 - AluSx SINE Alu -3 309 1 192 135 0 0 chr1 17016814 17016851 -265176813 + (CA)n Simple_repeat Simple_repeat 1 37 0 878 289 48 50 chr1 17016920 17016973 -265176691 - L1MC4a LINE L1 -1942 5866 5814 2223 49 0 14 chr1 17016973 17017282 -265176382 - AluY SINE Alu 0 305 1 878 289 48 50 chr1 17017282 17017666 -265175998 - L1MC4a LINE L1 -1994 5814 5429 740 144 22 65 chr1 17017668 17017807 -265175857 - FLAM_A SINE Alu 0 133 1 2027 132 0 3 chr1 17017816 17018126 -265175538 - AluSx SINE Alu -3 309 1 2138 114 7 0 chr1 17018630 17018937 -265174727 + AluSx SINE Alu 1 309 -3 324 234 0 39 chr1 17019005 17019082 -265174582 - MIR SINE MIR -57 151 78 424 246 109 28 chr1 17019401 17019612 -265174052 - MIR SINE MIR -7 255 28 289 240 13 0 chr1 17019713 17019788 -265173876 + MIR SINE MIR 46 121 -87 256 148 277 59 chr1 17020876 17020921 -265172743 - L1ME3A LINE L1 -11 6159 6125 1892 147 3 0 chr1 17020921 17021220 -265172444 + AluJb SINE Alu 3 302 -10 256 148 277 59 chr1 17021220 17021275 -265172389 - L1ME3A LINE L1 -45 6125 6037 689 236 150 24 chr1 17021275 17021702 -265171962 - L1ME LINE L1 -515 5655 5152 1717 153 16 13 chr1 17021702 17022010 -265171654 - AluJb SINE Alu -3 309 1 689 236 150 24 chr1 17022010 17022132 -265171532 - L1ME LINE L1 -1018 5152 5047 1759 159 7 10 chr1 17022145 17022454 -265171210 - AluJb SINE Alu -4 308 1 289 257 26 44 chr1 17022458 17022571 -265171093 - L1ME LINE L1 -1194 4952 4842 322 185 0 0 chr1 17022611 17022665 -265170999 + FLAM SINE Alu 78 131 -2 25 31 0 0 chr1 17022665 17022697 -265170967 + AT_rich Low_complexity Low_complexity 1 32 0 1690 174 10 0 chr1 17023108 17023402 -265170262 - AluJb SINE Alu -15 297 1 26 30 0 0 chr1 17023409 17023442 -265170222 + AT_rich Low_complexity Low_complexity 1 33 0 308 366 20 0 chr1 17023537 17023638 -265170026 + L2 LINE L2 3158 3260 -12 198 0 0 0 chr1 17023639 17023661 -265170003 + (TGAA)n Simple_repeat Simple_repeat 3 24 0 436 204 62 35 chr1 17023731 17023844 -265169820 + MLT1I LTR MaLR 277 392 -17 888 152 28 28 chr1 17024079 17024257 -265169407 - AluJo SINE Alu -52 260 83 525 277 43 0 chr1 17024308 17024449 -265169215 + L2 LINE L2 2371 2517 -797 236 250 0 0 chr1 17024805 17024853 -265168811 + L2 LINE L2 3265 3312 -1 208 381 57 0 chr1 17025335 17025440 -265168224 - L2 LINE L2 -5 3308 3198 491 199 5 25 chr1 17025925 17026125 -265167539 + CT-rich Low_complexity Low_complexity 1 195 0 3148 193 27 6 chr1 17026555 17027331 -265166333 - L1MC2 LINE L1 -3 6341 5460 271 284 13 84 chr1 17027332 17027487 -265166177 - MLT1-int LTR MaLR -218 1153 1010 1499 205 58 11 chr1 17027596 17027957 -265165707 - L1ME2 LINE L1 -263 5901 5524 239 229 66 16 chr1 17028926 17028987 -265164677 - MIR3 SINE MIR -7 201 138 502 253 94 48 chr1 17029564 17029849 -265163815 + LTR33 LTR ERVL 9 275 -248 410 368 9 9 chr1 17029887 17030110 -265163554 + HERV16 LTR ERVL 1228 1450 -3546 639 280 45 20 chr1 17030296 17030496 -265163168 + HERV16 LTR ERVL 1799 2003 -3761 339 291 0 0 chr1 17030516 17030595 -265163069 + LTR16B LTR ERVL 1 79 -385 1934 229 61 62 chr1 17031279 17031904 -265161760 - MLT1E3 LTR MaLR 0 624 1 387 329 62 5 chr1 17032017 17032227 -265161437 + L1ME3 LINE L1 152 373 -6023 262 227 41 52 chr1 17032756 17032853 -265160811 + L1ME3 LINE L1 2713 2808 -3407 1334 281 25 41 chr1 17033035 17033644 -265160020 + L1ME3 LINE L1 3902 4500 -1715 312 83 0 0 chr1 17033664 17033712 -265159952 + (TG)n Simple_repeat Simple_repeat 2 49 0 210 71 0 0 chr1 17033838 17033866 -265159798 + (TA)n Simple_repeat Simple_repeat 1 28 0 552 230 19 6 chr1 17033870 17034031 -265159633 + L1ME3 LINE L1 5364 5526 -707 1160 118 0 6 chr1 17034064 17034234 -265159430 - AluSq SINE Alu -144 169 1 623 253 19 43 chr1 17034237 17034289 -265159375 + L1ME3 LINE L1 5980 6032 -199 2587 165 5 2 chr1 17034289 17034720 -265158944 + MSTB1 LTR MaLR 1 432 0 623 253 19 43 chr1 17034720 17034924 -265158740 + L1ME3 LINE L1 6032 6230 -1 312 309 81 13 chr1 17035214 17035363 -265158301 + MIR SINE MIR 31 189 -73 3638 213 34 12 chr1 17035998 17037078 -265156586 + L1MB7 LINE L1 5041 6158 -26 1854 162 10 0 chr1 17037182 17037491 -265156173 + AluJo SINE Alu 1 312 0 357 264 47 2 chr1 17037636 17037753 -265155911 + MIR SINE MIR 47 173 -35 273 309 96 7 chr1 17037762 17037898 -265155766 + MER5A DNA MER1_type 14 161 -28 212 364 83 0 chr1 17039255 17039376 -265154288 + MIR SINE MIR 118 248 -14 248 277 15 15 chr1 17039483 17039548 -265154116 + MIR SINE MIR 82 146 -62 1664 165 10 0 chr1 17041922 17042225 -265151439 + AluSg SINE Alu 1 306 -4 463 279 7 14 chr1 17042398 17042545 -265151119 + MIR SINE MIR 96 241 -21 348 200 42 42 chr1 17043546 17043641 -265150023 - L1MB5 LINE L1 -9 6165 6071 1694 160 0 0 chr1 17046737 17047012 -265146652 - AluSx SINE Alu 0 312 38 16142 84 5 46 chr1 17047726 17049113 -265144551 - L1P LINE L1 -2920 3226 1982 5458 45 9 0 chr1 17049113 17049765 -265143899 + L1PA4 LINE L1 5494 6151 -4 16142 84 5 46 chr1 17049765 17050830 -265142834 - L1P LINE L1 -4164 1982 875 369 0 0 0 chr1 17053046 17053087 -265140577 + (TG)n Simple_repeat Simple_repeat 2 42 0 221 167 19 0 chr1 17054589 17054643 -265139021 + CT-rich Low_complexity Low_complexity 1 55 0 281 157 36 12 chr1 17055715 17055798 -265137866 + GA-rich Low_complexity Low_complexity 2 86 0 270 73 0 0 chr1 17056204 17056245 -265137419 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 365 358 11 34 chr1 17057411 17057587 -265136077 + L1MC4 LINE L1 7460 7631 -411 532 314 45 48 chr1 17057598 17058040 -265135624 - L1MC4 LINE L1 -413 7629 7189 192 40 0 0 chr1 17058407 17058432 -265135232 + (TG)n Simple_repeat Simple_repeat 1 25 0 255 203 68 0 chr1 17059663 17059737 -265133927 - MLT2D LTR ERVL -70 445 367 514 313 21 10 chr1 17059762 17059954 -265133710 - MLT2D LTR ERVL -220 194 1 1059 267 26 8 chr1 17059957 17060346 -265133318 - L1M4 LINE L1 -892 5254 4859 1460 147 8 26 chr1 17060649 17060915 -265132749 + AluSq SINE Alu 50 310 -3 413 251 201 46 chr1 17060915 17061198 -265132466 + L1MEc LINE L1 983 1309 -5254 409 295 54 27 chr1 17061276 17061685 -265131979 + L1MEc LINE L1 1265 1683 -4701 * 1159 275 81 29 chr1 17061682 17061751 -265131913 + L1 LINE L1 4195 4259 -1887 308 94 19 0 chr1 17061751 17061804 -265131860 + (CA)n Simple_repeat Simple_repeat 2 55 0 1159 275 81 29 chr1 17061804 17062218 -265131446 + L1 LINE L1 4259 4703 -1443 1218 218 7 10 chr1 17062292 17062586 -265131078 - AluJo SINE Alu -6 306 14 33 66 0 0 chr1 17062658 17062719 -265130945 + AT_rich Low_complexity Low_complexity 1 61 0 1037 70 7 0 chr1 17062737 17062880 -265130784 + (CATATA)n Simple_repeat Simple_repeat 5 148 0 265 287 116 8 chr1 17063805 17063934 -265129730 + MIR SINE MIR 104 246 -16 333 337 62 14 chr1 17064007 17064295 -265129369 - L1ME LINE L1 -330 5791 5490 198 191 0 0 chr1 17064458 17064500 -265129164 + (TA)n Simple_repeat Simple_repeat 2 43 0 402 264 239 5 chr1 17064623 17064824 -265128840 - HAL1 LINE L1 -155 2352 2105 206 350 12 0 chr1 17066089 17066169 -265127495 + CT-rich Low_complexity Low_complexity 3 83 0 405 194 0 0 chr1 17067074 17067146 -265126518 - tRNA-Gln-CAG tRNA tRNA -3 72 1 192 195 172 58 chr1 17067734 17067821 -265125843 - L2 LINE L2 -7 3265 3169 530 285 180 10 chr1 17068593 17068793 -265124871 + MIR SINE MIR 3 236 -26 393 277 105 41 chr1 17069037 17069254 -265124410 + MIR SINE MIR 8 248 -14 494 31 16 0 chr1 17070151 17070215 -265123449 + (TATAG)n Simple_repeat Simple_repeat 5 69 0 671 232 126 50 chr1 17070222 17070371 -265123293 + MIR SINE MIR 33 202 -60 2209 109 0 0 chr1 17070371 17070675 -265122989 + AluSx SINE Alu 1 304 -8 671 232 126 50 chr1 17070675 17070723 -265122941 + MIR SINE MIR 202 245 -17 465 179 90 117 chr1 17070791 17070936 -265122728 - MLT1H1 LTR MaLR 0 555 404 180 0 0 0 chr1 17071239 17071259 -265122405 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2042 89 0 18 chr1 17071261 17071543 -265122121 - AluSg SINE Alu -33 277 1 399 240 0 0 chr1 17072867 17072942 -265120722 + tRNA-Val-GTG tRNA tRNA 1 75 -1 181 303 113 21 chr1 17073412 17073554 -265120110 - L2 LINE L2 -956 2358 2204 658 0 0 0 chr1 17074589 17074660 -265119004 + tRNA-Gly-GGG tRNA tRNA 1 71 -3 2203 103 7 0 chr1 17075336 17075638 -265118026 + AluSx SINE Alu 1 304 -8 337 203 14 14 chr1 17075889 17075958 -265117706 + tRNA-His-CAC tRNA tRNA 4 72 -3 651 135 0 0 chr1 17076411 17076507 -265117157 - AluSg/x SINE Alu -22 290 195 730 231 91 49 chr1 17076521 17076829 -265116835 - L1ME2 LINE L1 -13 6151 5831 322 299 163 0 chr1 17076915 17077062 -265116602 - L1ME2 LINE L1 -531 5631 5461 738 110 0 0 chr1 17077065 17077165 -265116499 + AluSc SINE Alu 80 179 -130 530 185 0 0 chr1 17077161 17077253 -265116411 + AluJb SINE Alu 210 301 -11 * 441 247 101 51 chr1 17077253 17077472 -265116192 - L1ME2 LINE L1 -703 5471 5264 8737 46 9 0 chr1 17077472 17079422 -265114242 - L1PA8 LINE L1 0 6172 4293 441 247 101 51 chr1 17079422 17079489 -265114175 - L1ME2 LINE L1 -910 5264 5202 4879 173 23 14 chr1 17079489 17080400 -265113264 - MER49 LTR ERV1 0 923 5 441 247 101 51 chr1 17080400 17080560 -265113104 - L1ME2 LINE L1 -972 5202 5000 734 276 128 38 chr1 17082085 17082592 -265111072 - L1M4 LINE L1 -899 5247 4695 2601 91 8 0 chr1 17082675 17083027 -265110637 + THE1A LTR MaLR 1 355 0 1152 179 24 32 chr1 17083204 17083450 -265110214 + MLT1A1 LTR MaLR 122 365 0 353 189 57 126 chr1 17084334 17084509 -265109155 + MER20 DNA MER1_type 1 163 -56 367 304 25 19 chr1 17084593 17084754 -265108910 - L2 LINE L2 -802 2512 2351 602 28 0 0 chr1 17085247 17085319 -265108345 + tRNA-Glu-GAG tRNA tRNA 1 72 -3 645 183 73 0 chr1 17086377 17086514 -265107150 + U1 snRNA snRNA 5 151 -14 394 176 0 0 chr1 17087011 17087079 -265106585 - tRNA-His-CAC tRNA tRNA -2 73 6 1981 119 0 14 chr1 17087144 17087439 -265106225 - AluSx SINE Alu -21 291 1 556 81 0 0 chr1 17088126 17088200 -265105464 + tRNA-Asn-AAC tRNA tRNA 1 74 -3 405 231 27 47 chr1 17088220 17088341 -265105323 + AluS SINE Alu 1 87 -216 543 231 169 72 chr1 17088559 17088711 -265104953 - L1MEc LINE L1 -4356 2040 1904 315 0 0 0 chr1 17088711 17088746 -265104918 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 543 231 169 72 chr1 17088746 17088772 -265104892 - L1MEc LINE L1 -4492 1904 1882 1800 150 3 0 chr1 17088772 17089058 -265104606 - AluSx SINE Alu -25 287 1 543 231 169 72 chr1 17089058 17089185 -265104479 - L1MEc LINE L1 -4514 1882 1704 1736 63 0 5 chr1 17089251 17089473 -265104191 + AluY SINE Alu 1 221 -90 2813 305 53 46 chr1 17089502 17089769 -265103895 + PRIMA41-int LTR ERV1 4072 4336 -3420 198 0 0 0 chr1 17089769 17089791 -265103873 + (CCCCCA)n Simple_repeat Simple_repeat 2 23 0 2813 305 53 46 chr1 17089791 17090225 -265103439 + PRIMA41-int LTR ERV1 4336 4766 -2990 1997 130 3 7 chr1 17090225 17090533 -265103131 + AluSx SINE Alu 1 307 -5 2813 305 53 46 chr1 17090533 17091447 -265102217 + PRIMA41-int LTR ERV1 4766 5699 -2057 221 375 104 7 chr1 17092759 17092903 -265100761 - MIR3 SINE MIR -7 201 44 1781 110 50 30 chr1 17093093 17093394 -265100270 - AluSp SINE Alu -6 307 1 2244 82 0 31 chr1 17093539 17093856 -265099808 + AluY SINE Alu 1 307 -4 342 365 29 29 chr1 17094118 17094288 -265099376 + MER5B DNA MER1_type 7 176 -2 225 0 0 0 chr1 17094741 17094766 -265098898 + (A)n Simple_repeat Simple_repeat 1 25 0 231 380 54 5 chr1 17095015 17095199 -265098465 - L3 LINE CR1 -1319 258 66 1381 121 0 0 chr1 17095258 17095456 -265098208 - AluSg/x SINE Alu -1 309 112 4284 138 56 20 chr1 17095460 17096192 -265097472 - LTR49-int LTR ERV1 -5573 758 1 3219 146 29 22 chr1 17096194 17096785 -265096879 - LTR49 LTR ERV1 0 595 1 390 269 19 9 chr1 17096825 17096933 -265096731 + L2 LINE L2 2409 2517 -797 28 61 0 0 chr1 17098003 17098052 -265095612 + AT_rich Low_complexity Low_complexity 1 49 0 695 266 78 6 chr1 17098161 17098657 -265095007 + L1ME LINE L1 1561 2138 -4258 302 298 83 30 chr1 17098678 17098846 -265094818 + L1ME LINE L1 5694 5870 -320 670 13 0 0 chr1 17099939 17100014 -265093650 + tRNA-Asn-AAC tRNA tRNA 1 75 -2 1065 133 19 0 chr1 17100478 17100636 -265093028 + AluSg/x SINE Alu 132 292 -18 2553 206 12 25 chr1 17100868 17101221 -265092443 - MER72 LTR ERV1 -218 504 159 3915 102 47 22 chr1 17101221 17101699 -265091965 - MER51D LTR ERV1 -2 655 156 2324 85 0 3 chr1 17101699 17102005 -265091659 - AluSx SINE Alu -7 305 1 3915 102 47 22 chr1 17102005 17102165 -265091499 - MER51D LTR ERV1 -501 156 1 2553 206 12 25 chr1 17102165 17102322 -265091342 - MER72 LTR ERV1 -563 159 1 988 126 21 0 chr1 17102330 17102486 -265091178 - LTR49 LTR ERV1 -444 151 1 1017 168 20 39 chr1 17102494 17102540 -265091124 + MER89 LTR ERV1 359 404 -155 1861 117 7 11 chr1 17102540 17102865 -265090799 - AluY SINE Alu 0 324 1 1017 168 20 39 chr1 17102865 17103020 -265090644 + MER89 LTR ERV1 404 557 -2 654 191 94 63 chr1 17103038 17103355 -265090309 + MER31B LTR ERV1 1 445 -21 582 186 83 51 chr1 17103370 17103520 -265090144 + LTR8 LTR ERV1 2 156 -535 2011 153 9 18 chr1 17103520 17103860 -265089804 + MER1B DNA MER1_type 1 337 -2 2925 135 49 46 chr1 17103872 17104442 -265089222 + LTR8A LTR ERV1 156 727 0 3175 124 37 4 chr1 17104730 17105212 -265088452 - MER41E LTR ERV1 0 512 15 265 312 58 22 chr1 17105789 17105927 -265087737 + Charlie4 DNA MER1_type 1815 1957 -4 1535 0 0 0 chr1 17106312 17106476 -265087188 + U1 snRNA snRNA 1 164 -1 326 167 139 0 chr1 17106920 17106992 -265086672 - MER45B DNA AcHobo -647 393 312 479 220 80 13 chr1 17106993 17107143 -265086521 + REP3 LTR ERV 2 161 -401 1488 138 0 24 chr1 17107629 17107711 -265085953 + AluSx SINE Alu 59 141 -171 249 33 0 0 chr1 17107711 17107741 -265085923 + (TAA)n Simple_repeat Simple_repeat 2 31 0 1488 138 0 24 chr1 17107741 17107905 -265085759 + AluSx SINE Alu 141 299 -13 324 48 0 0 chr1 17108077 17108119 -265085545 + (TC)n Simple_repeat Simple_repeat 1 42 0 26 50 0 0 chr1 17109163 17109203 -265084461 + AT_rich Low_complexity Low_complexity 1 40 0 677 221 263 8 chr1 17109203 17109443 -265084221 + AluJo SINE Alu 2 302 0 585 179 0 0 chr1 17109499 17109605 -265084059 + FLAM_A SINE Alu 18 123 -19 599 176 20 0 chr1 17109610 17109712 -265083952 + FRAM SINE Alu 40 143 -33 21 36 0 0 chr1 17109715 17109743 -265083921 + AT_rich Low_complexity Low_complexity 1 28 0 2009 126 0 0 chr1 17109764 17110057 -265083607 - AluSx SINE Alu -17 295 3 24 32 0 0 chr1 17110231 17110262 -265083402 + AT_rich Low_complexity Low_complexity 1 31 0 1988 121 4 0 chr1 17110290 17110601 -265083063 - AluSg SINE Alu 0 312 1 1854 98 58 15 chr1 17110670 17110944 -265082720 + AluSg SINE Alu 1 286 -24 40 0 0 0 chr1 17110945 17110985 -265082679 + AT_rich Low_complexity Low_complexity 1 40 0 2264 244 10 23 chr1 17111010 17111531 -265082133 + MER87 LTR ERV1 6 519 -22 404 200 118 0 chr1 17111520 17111605 -265082059 + AluSg/x SINE Alu 205 299 -1 * 1838 113 89 0 chr1 17112405 17112687 -265080977 + AluSx SINE Alu 1 307 -5 788 196 14 0 chr1 17112827 17112970 -265080694 + AluJb SINE Alu 140 311 0 244 0 0 0 chr1 17112970 17112997 -265080667 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1530 208 125 60 chr1 17113586 17114121 -265079543 + LTR4 LTR ERV1 27 596 0 253 91 0 0 chr1 17114121 17114154 -265079510 + U1 snRNA snRNA 133 165 0 216 0 0 0 chr1 17114182 17114206 -265079458 + (T)n Simple_repeat Simple_repeat 1 24 0 917 173 31 119 chr1 17114582 17114808 -265078856 - AluJb SINE Alu -106 206 1 1692 137 0 0 chr1 17115472 17115705 -265077959 + AluSx SINE Alu 1 233 -79 2234 88 0 14 chr1 17115732 17116049 -265077615 - AluY SINE Alu 0 313 1 195 42 0 0 chr1 17116301 17116325 -265077339 + (TG)n Simple_repeat Simple_repeat 1 24 0 584 197 0 0 chr1 17116333 17116450 -265077214 - FLAM_C SINE Alu -16 117 1 743 244 165 28 chr1 17116548 17117052 -265076612 + L1MEc LINE L1 1566 2138 -4258 294 102 41 7 chr1 17117077 17117135 -265076529 + Alu SINE Alu 245 293 -9 2030 131 0 7 chr1 17117147 17117445 -265076219 + AluSx SINE Alu 1 296 -16 1496 82 16 78 chr1 17117472 17117626 -265076038 + MER84 LTR ERVI 8 141 -366 2304 104 3 0 chr1 17117626 17117923 -265075741 - AluSg1 SINE Alu -11 298 1 1496 82 16 78 chr1 17117923 17118025 -265075639 + MER84 LTR ERVI 141 248 -259 2220 121 0 0 chr1 17118094 17118383 -265075281 + AluSq SINE Alu 11 299 -14 505 249 102 0 chr1 17118397 17118594 -265075070 - L1ME4a LINE L1 -188 5933 5717 401 257 18 0 chr1 17119201 17119310 -265074354 + MIR SINE MIR 72 182 -80 2186 94 34 14 chr1 17120098 17120232 -265073432 + AluSg SINE Alu 1 131 -179 2225 56 77 3 chr1 17120232 17120517 -265073147 + AluY SINE Alu 1 306 -5 2186 94 34 14 chr1 17120517 17120679 -265072985 + AluSg SINE Alu 131 303 -7 242 132 19 0 chr1 17121212 17121265 -265072399 + C-rich Low_complexity Low_complexity 5 58 0 206 306 83 0 chr1 17121835 17121907 -265071757 - MIR SINE MIR -74 188 111 1569 129 32 79 chr1 17122596 17122876 -265070788 + AluJo SINE Alu 30 296 -16 629 252 187 8 chr1 17122922 17123118 -265070546 - L2 LINE L2 -192 3080 2920 2322 110 0 25 chr1 17123118 17123436 -265070228 + AluSx SINE Alu 1 310 -2 629 252 187 8 chr1 17123436 17123646 -265070018 - L2 LINE L2 -352 2920 2605 1939 152 0 30 chr1 17123733 17124036 -265069628 - AluJb SINE Alu -18 294 1 2348 95 0 0 chr1 17124059 17124381 -265069283 + AluSx SINE Alu 1 322 0 194 343 127 38 chr1 17124384 17124597 -265069067 + MIR SINE MIR 31 262 0 627 227 74 51 chr1 17124872 17124908 -265068756 - MIR SINE MIR 0 262 228 730 285 119 17 chr1 17124908 17125312 -265068352 - MLT1J1 LTR MaLR -1 445 1 627 227 74 51 chr1 17125312 17125491 -265068173 - MIR SINE MIR -34 228 42 2220 129 7 0 chr1 17125965 17126268 -265067396 - AluSx SINE Alu -7 305 1 264 205 42 66 chr1 17126541 17126641 -265067023 + MIR SINE MIR 63 165 -43 855 187 0 7 chr1 17126723 17126878 -265066786 - LTR2B LTR ERV1 0 490 337 838 148 0 15 chr1 17126978 17127113 -265066551 - FLAM_C SINE Alu 0 133 1 1147 144 80 5 chr1 17127120 17127297 -265066367 - AluSg/x SINE Alu 0 308 113 432 0 0 0 chr1 17127297 17127345 -265066319 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 1147 144 80 5 chr1 17127345 17127379 -265066285 - AluSg/x SINE Alu -195 113 83 1558 82 0 0 chr1 17127607 17127791 -265065873 - AluSc SINE Alu -105 204 21 1177 73 0 0 chr1 17127791 17127927 -265065737 - AluSq/x SINE Alu -176 136 1 368 179 45 167 chr1 17127932 17128088 -265065576 - MIR SINE MIR -114 148 12 2404 106 0 0 chr1 17128179 17128481 -265065183 - AluSp SINE Alu -10 303 2 446 275 14 63 chr1 17128514 17128721 -265064943 - MIR SINE MIR -6 256 60 262 211 41 14 chr1 17129132 17129279 -265064385 + CT-rich Low_complexity Low_complexity 4 154 0 202 298 0 0 chr1 17130174 17130231 -265063433 - MIR SINE MIR -74 188 132 1597 75 0 0 chr1 17130239 17130425 -265063239 + AluSx SINE Alu 1 186 -126 402 167 0 0 chr1 17130425 17130497 -265063167 + AluSx SINE Alu 230 301 -8 195 235 145 19 chr1 17130497 17130590 -265063074 - MIR SINE MIR -102 106 10 656 272 67 20 chr1 17131073 17131268 -265062396 - MIR SINE MIR -6 256 53 1746 116 31 12 chr1 17131275 17131565 -265062099 - AluSx SINE Alu 0 315 21 208 315 102 0 chr1 17131775 17131902 -265061762 - L2 LINE L2 -213 3059 2920 1301 174 9 0 chr1 17132131 17132344 -265061320 - AluJb SINE Alu -77 235 21 1020 213 126 92 chr1 17132376 17132457 -265061207 - L1MC5 LINE L1 -302 7659 7582 2109 115 0 4 chr1 17132457 17132736 -265060928 + AluSx SINE Alu 15 292 -20 1020 213 126 92 chr1 17132736 17132820 -265060844 - L1MC5 LINE L1 -379 7582 7502 1965 141 30 3 chr1 17132820 17133118 -265060546 - AluSx SINE Alu -6 306 1 1020 213 126 92 chr1 17133118 17133537 -265060127 - L1MC5 LINE L1 -459 7502 7054 2164 117 10 3 chr1 17133567 17133867 -265059797 - AluJb SINE Alu -10 302 1 1959 145 7 0 chr1 17134380 17134670 -265058994 + AluSx SINE Alu 14 305 -7 309 288 0 0 chr1 17134742 17134815 -265058849 - MIR SINE MIR -113 149 77 435 229 133 9 chr1 17135134 17135358 -265058306 - MIR SINE MIR -7 255 3 253 267 23 0 chr1 17135446 17135532 -265058132 + MIR SINE MIR 46 133 -75 1208 77 24 29 chr1 17137443 17137619 -265056045 - AluY SINE Alu 0 308 132 2179 116 3 3 chr1 17137619 17137920 -265055744 - AluSg1 SINE Alu -8 301 1 1208 77 24 29 chr1 17137920 17137938 -265055726 - AluY SINE Alu -176 132 115 282 56 0 0 chr1 17137942 17137978 -265055686 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 423 260 0 0 chr1 17137986 17138086 -265055578 - FRAM SINE Alu -29 137 38 827 179 0 8 chr1 17138264 17138398 -265055266 - AluJo SINE Alu -178 134 2 23 0 0 0 chr1 17138400 17138423 -265055241 + AT_rich Low_complexity Low_complexity 1 23 0 1431 142 0 21 chr1 17138463 17138687 -265054977 + AluSg/x SINE Alu 83 303 -7 2471 78 0 13 chr1 17138687 17138994 -265054670 + AluY SINE Alu 9 311 0 381 192 293 0 chr1 17139002 17139101 -265054563 - MER3 DNA MER1_type -80 129 2 832 165 0 0 chr1 17139132 17139265 -265054399 - FLAM_C SINE Alu 0 133 1 2069 153 3 0 chr1 17139272 17139572 -265054092 - AluJb SINE Alu -10 302 2 1765 97 108 8 chr1 17139606 17139865 -265053799 - AluSq SINE Alu -19 294 10 239 362 0 0 chr1 17140090 17140184 -265053480 - MIR SINE MIR -4 258 165 721 165 0 8 chr1 17140378 17140499 -265053165 - FLAM_C SINE Alu -23 120 1 29 0 0 0 chr1 17140500 17140529 -265053135 + AT_rich Low_complexity Low_complexity 1 29 0 979 127 0 8 chr1 17140575 17140709 -265052955 + AluSq/x SINE Alu 3 135 -178 2157 105 36 13 chr1 17140709 17141015 -265052649 + AluSp SINE Alu 1 313 0 2018 128 0 4 chr1 17141075 17141348 -265052316 + AluSx SINE Alu 33 304 -8 2227 78 53 0 chr1 17141350 17141633 -265052031 + AluY SINE Alu 2 299 -12 249 295 0 13 chr1 17142493 17142571 -265051093 - MIR SINE MIR -78 130 54 804 238 104 0 chr1 17142639 17142870 -265050794 - MIR SINE MIR 0 262 8 311 197 93 17 chr1 17142957 17143007 -265050657 - MIR SINE MIR -31 231 186 2432 87 0 0 chr1 17143007 17143305 -265050359 + AluSx SINE Alu 1 298 -14 311 197 93 17 chr1 17143305 17143370 -265050294 - MIR SINE MIR -76 186 104 270 242 0 0 chr1 17144273 17144335 -265049329 + (TCTCTG)n Simple_repeat Simple_repeat 4 65 0 411 219 73 16 chr1 17144851 17144974 -265048690 + MIR SINE MIR 16 145 -117 2177 91 29 0 chr1 17144976 17145304 -265048360 + AluSx SINE Alu 1 336 0 2016 125 35 0 chr1 17145597 17145907 -265047757 - AluSx SINE Alu 0 312 1 251 253 38 13 chr1 17145938 17146017 -265047647 - MIR SINE MIR -87 121 41 21 0 0 0 chr1 17146225 17146246 -265047418 + GC_rich Low_complexity Low_complexity 1 21 0 5966 225 62 25 chr1 17146521 17148649 -265045015 + L1MD1 LINE L1 871 3080 -3460 266 100 0 80 chr1 17148649 17148699 -265044965 + MLT1B LTR MaLR 1 46 -344 3055 187 28 75 chr1 17148701 17149445 -265044219 + L1MD1 LINE L1 5791 6489 -147 2327 95 0 0 chr1 17149445 17149757 -265043907 - AluY SINE Alu 0 312 1 3055 187 28 75 chr1 17149757 17149899 -265043765 + L1MD1 LINE L1 6489 6636 0 372 94 0 0 chr1 17150179 17150232 -265043432 + (CA)n Simple_repeat Simple_repeat 2 54 0 1140 223 36 13 chr1 17150232 17150563 -265043101 - MLT2B1 LTR ERVL -103 417 1 2553 199 68 24 chr1 17151072 17151705 -265041959 + MER67B LTR ERV1 1 661 0 381 252 75 63 chr1 17152082 17152336 -265041328 + L1ME3 LINE L1 5580 5836 -326 355 317 49 62 chr1 17153070 17153313 -265040351 + L1ME LINE L1 5541 5780 -341 1364 173 0 9 chr1 17153415 17153629 -265040035 - AluJo SINE Alu -100 212 1 367 79 51 64 chr1 17153684 17153768 -265039896 + FLAM_A SINE Alu 62 133 0 2013 147 3 0 chr1 17153887 17154172 -265039492 - AluSq SINE Alu -27 286 1 1164 139 0 0 chr1 17154172 17154338 -265039326 - AluSg/x SINE Alu -10 302 137 342 307 45 69 chr1 17154343 17154545 -265039119 - L1MC4a LINE L1 -1870 5938 5742 1316 227 142 15 chr1 17154562 17154972 -265038692 + MLT1C LTR MaLR 6 467 0 2025 108 29 4 chr1 17154981 17155260 -265038404 - AluSc SINE Alu -23 286 1 763 233 92 50 chr1 17155261 17155699 -265037965 + MLT1E LTR MaLR 4 542 -51 2420 109 0 0 chr1 17155699 17156011 -265037653 + AluSq SINE Alu 1 312 -1 321 26 0 0 chr1 17156042 17156080 -265037584 + (A)n Simple_repeat Simple_repeat 1 38 0 655 219 55 0 chr1 17156396 17156524 -265037140 + MIR SINE MIR 15 149 -113 630 192 34 48 chr1 17156533 17156679 -265036985 + MLT1A1 LTR MaLR 11 154 -211 1968 130 42 0 chr1 17156679 17156963 -265036701 + AluSq SINE Alu 1 296 -17 950 133 0 0 chr1 17156980 17157115 -265036549 + FLAM_C SINE Alu 9 143 0 936 156 167 0 chr1 17157115 17157301 -265036363 + MLT1A1 LTR MaLR 149 365 0 2104 124 10 3 chr1 17157311 17157609 -265036055 + AluSx SINE Alu 1 300 -12 271 236 55 73 chr1 17157609 17157719 -265035945 + MIR SINE MIR 155 262 0 1993 217 124 8 chr1 17157844 17158375 -265035289 - MLT1E LTR MaLR 0 593 1 2109 126 27 0 chr1 17158896 17159189 -265034475 - AluSx SINE Alu -11 301 1 1608 165 12 77 chr1 17159479 17159694 -265033970 - AluJo SINE Alu -6 306 118 2074 125 14 7 chr1 17159694 17159991 -265033673 + AluSx SINE Alu 1 299 -13 1608 165 12 77 chr1 17159991 17160102 -265033562 - AluJo SINE Alu -194 118 1 1949 128 54 10 chr1 17161982 17162278 -265031386 - AluJb SINE Alu -3 309 1 2976 95 62 28 chr1 17162290 17162587 -265031077 - MER75 DNA T2_type 0 514 192 1963 153 10 7 chr1 17162587 17162895 -265030769 + AluJb SINE Alu 1 309 -3 2976 95 62 28 chr1 17162895 17163094 -265030570 - MER75 DNA T2_type -322 192 1 2145 118 20 3 chr1 17163119 17163424 -265030240 - AluSq SINE Alu -3 310 1 926 209 0 22 chr1 17163431 17163596 -265030068 + MER58A DNA MER1_type 47 209 -2211 1223 187 117 11 chr1 17163596 17163869 -265029795 + AluSg1 SINE Alu 1 302 -7 926 209 0 22 chr1 17163869 17163885 -265029779 + MER58A DNA MER1_type 209 224 0 2395 100 0 3 chr1 17164273 17164583 -265029081 + AluSq SINE Alu 1 309 -4 380 279 162 13 chr1 17165606 17165760 -265027904 + MIR SINE MIR 79 255 -7 652 269 29 49 chr1 17165762 17165942 -265027722 - MIR SINE MIR 0 262 80 2247 109 3 3 chr1 17165942 17166236 -265027428 + AluSx SINE Alu 1 294 -18 2328 105 3 6 chr1 17166239 17166553 -265027111 + AluSp SINE Alu 1 313 0 652 269 29 49 chr1 17166553 17166613 -265027051 - MIR SINE MIR -184 78 23 261 250 169 27 chr1 17166628 17166776 -265026888 + L2 LINE L2 3123 3291 -22 2270 110 0 0 chr1 17166811 17167102 -265026562 + AluSg SINE Alu 1 291 -19 2322 107 3 10 chr1 17167189 17167498 -265026166 + AluSp SINE Alu 1 307 -6 33 0 0 0 chr1 17167806 17167839 -265025825 + GC_rich Low_complexity Low_complexity 1 33 0 302 296 177 0 chr1 17167993 17168179 -265025485 + L2 LINE L2 2835 3053 -219 2329 227 64 27 chr1 17168983 17169622 -265024042 + L1ME3A LINE L1 5408 6080 -90 2181 87 3 17 chr1 17169622 17169932 -265023732 - AluSp SINE Alu 0 306 1 2329 227 64 27 chr1 17169932 17170027 -265023637 + L1ME3A LINE L1 6080 6170 0 292 234 0 99 chr1 17170141 17170252 -265023412 + MIR SINE MIR 36 135 -73 266 77 58 0 chr1 17170298 17170350 -265023314 + A-rich Low_complexity Low_complexity 2 56 0 228 67 0 0 chr1 17170707 17170737 -265022927 + (CAGCC)n Simple_repeat Simple_repeat 1 30 0 374 250 198 96 chr1 17170987 17171311 -265022353 + L2 LINE L2 2914 3270 -2 198 240 53 40 chr1 17171628 17171703 -265021961 + MIR SINE MIR 20 95 -113 1205 161 54 93 chr1 17173456 17173519 -265020145 + AluJo SINE Alu 29 93 -219 2485 86 0 0 chr1 17173519 17173820 -265019844 - AluSx SINE Alu -11 301 1 1205 161 54 93 chr1 17173820 17174036 -265019628 + AluJo SINE Alu 93 297 -15 1731 159 32 14 chr1 17174036 17174313 -265019351 - AluJo SINE Alu -30 282 1 2339 99 3 3 chr1 17174370 17174672 -265018992 - AluSp SINE Alu -11 302 1 2106 146 7 0 chr1 17174672 17174974 -265018690 - AluSx SINE Alu -6 306 3 996 199 27 36 chr1 17175096 17175317 -265018347 + MER20 DNA MER1_type 1 219 0 2185 100 0 14 chr1 17175474 17175765 -265017899 + AluSg1 SINE Alu 1 287 -22 332 321 15 15 chr1 17175973 17176107 -265017557 - MIR SINE MIR -50 212 79 802 209 52 94 chr1 17177055 17177362 -265016302 - MER58B DNA MER1_type 0 341 48 1687 180 21 0 chr1 17177669 17177952 -265015712 - AluJb SINE Alu -23 289 1 2428 84 3 0 chr1 17178320 17178618 -265015046 + AluSp SINE Alu 1 299 -14 2185 93 0 0 chr1 17180454 17180724 -265012940 + AluSx SINE Alu 1 270 -42 1303 90 21 26 chr1 17181618 17181788 -265011876 - AluY SINE Alu -9 302 132 2169 105 3 10 chr1 17181788 17182084 -265011580 - AluSg1 SINE Alu -15 294 1 1303 90 21 26 chr1 17182084 17182102 -265011562 - AluY SINE Alu -179 132 115 303 28 0 0 chr1 17182106 17182142 -265011522 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 494 210 0 0 chr1 17182150 17182250 -265011414 - FRAM SINE Alu -39 137 38 866 156 0 7 chr1 17182422 17182557 -265011107 - AluJo SINE Alu -178 134 1 29 0 0 0 chr1 17182558 17182587 -265011077 + AT_rich Low_complexity Low_complexity 1 29 0 1580 121 0 14 chr1 17182620 17182843 -265010821 + AluSg/x SINE Alu 83 302 -8 2464 75 0 13 chr1 17182844 17183150 -265010514 + AluY SINE Alu 2 303 -8 374 192 293 0 chr1 17183150 17183249 -265010415 - MER3 DNA MER1_type -80 129 2 816 152 0 0 chr1 17183272 17183397 -265010267 - FLAM_C SINE Alu -8 125 1 1853 160 45 0 chr1 17183404 17183692 -265009972 - AluJb SINE Alu -10 302 2 248 362 0 0 chr1 17183909 17184003 -265009661 - MIR SINE MIR -4 258 165 430 206 0 0 chr1 17184882 17184955 -265008709 + tRNA-Val-GTG tRNA tRNA 1 73 -3 502 81 0 0 chr1 17186601 17186675 -265006989 + tRNA-Gly-GGG tRNA tRNA 1 74 0 2214 110 10 0 chr1 17187305 17187597 -265006067 + AluSx SINE Alu 1 295 -17 334 232 0 0 chr1 17187849 17187918 -265005746 + tRNA-His-CAC tRNA tRNA 4 72 -3 559 177 0 0 chr1 17188371 17188467 -265005197 - AluSg/x SINE Alu -22 287 192 289 200 165 0 chr1 17188495 17188580 -265005084 - L1ME3 LINE L1 -30 6132 6034 303 28 0 0 chr1 17189617 17189653 -265004011 + (CA)n Simple_repeat Simple_repeat 2 37 0 2110 128 0 0 chr1 17192323 17192628 -265001036 - AluSx SINE Alu 0 305 1 531 285 30 18 chr1 17193357 17193522 -265000142 + MIR SINE MIR 39 205 -57 472 265 54 54 chr1 17195097 17195263 -264998401 + MIR SINE MIR 20 185 -77 487 266 109 0 chr1 17195340 17195468 -264998196 - MER63 DNA MER1_type -68 768 1 29 0 0 0 chr1 17195929 17195958 -264997706 + AT_rich Low_complexity Low_complexity 1 29 0 1990 174 14 3 chr1 17196242 17196603 -264997061 - MLT1A1 LTR MaLR 0 365 1 282 197 118 26 chr1 17198284 17198360 -264995304 + MIR SINE MIR 81 163 -99 871 180 51 88 chr1 17198360 17198577 -264995087 + MER63A DNA MER1_type 1 209 -1 189 234 21 0 chr1 17198613 17198660 -264995004 + L2 LINE L2 3240 3287 -26 181 359 0 9 chr1 17200079 17200185 -264993479 - L2 LINE L2 -251 3021 2917 1829 172 0 25 chr1 17200343 17200663 -264993001 + AluJo SINE Alu 1 312 0 1953 149 10 0 chr1 17200902 17201190 -264992474 - AluSx SINE Alu -21 291 1 349 268 94 0 chr1 17201200 17201214 -264992450 - L1MA10 LINE L1 -2 6332 6319 1193 216 50 84 chr1 17201214 17201654 -264992010 - L1ME2 LINE L1 -8 6156 5732 207 69 0 0 chr1 17202657 17202686 -264990978 + (TG)n Simple_repeat Simple_repeat 1 29 0 2466 77 3 10 chr1 17204442 17204755 -264988909 + AluY SINE Alu 1 311 0 258 351 68 14 chr1 17205762 17205910 -264987754 - L2 LINE L2 -2 3270 3115 279 0 0 0 chr1 17206024 17206055 -264987609 + (TG)n Simple_repeat Simple_repeat 1 31 0 1083 184 128 3 chr1 17207252 17207540 -264986124 - MER33 DNA MER1_type 0 324 1 450 265 176 10 chr1 17208234 17208438 -264985226 - Charlie5 DNA MER1_type -27 2585 2348 195 129 0 0 chr1 17209312 17209343 -264984321 + (TCC)n Simple_repeat Simple_repeat 3 33 0 566 255 148 5 chr1 17211929 17212125 -264981539 + MIR SINE MIR 36 259 -3 606 304 114 31 chr1 17212170 17212969 -264980695 - L2 LINE L2 -177 3095 2216 443 294 70 35 chr1 17215049 17215250 -264978414 + L3 LINE CR1 1369 1576 -1 2156 107 55 0 chr1 17215258 17215549 -264978115 + AluSg SINE Alu 1 307 -3 270 228 269 48 chr1 17216335 17216480 -264977184 - MIR SINE MIR -3 259 83 2166 55 0 4 chr1 17216869 17217124 -264976540 - AluY SINE Alu -7 304 51 258 32 0 0 chr1 17217157 17217188 -264976476 + (TG)n Simple_repeat Simple_repeat 2 32 0 781 273 59 70 chr1 17217360 17217906 -264975758 - L1MEd LINE L1 -5141 978 439 305 293 79 6 chr1 17217947 17218111 -264975553 - L1MEd LINE L1 -5942 177 2 916 115 37 84 chr1 17219345 17219393 -264974271 - L1MB3 LINE L1 -3 6180 6131 2266 107 7 3 chr1 17219393 17219693 -264973971 - AluSp SINE Alu -12 301 1 916 115 37 84 chr1 17219693 17219835 -264973829 - L1MB3 LINE L1 -52 6131 5999 254 274 128 39 chr1 17220628 17220730 -264972934 + L2 LINE L2 3183 3293 -20 22 0 0 0 chr1 17220894 17220916 -264972748 + AT_rich Low_complexity Low_complexity 1 22 0 359 277 9 62 chr1 17221743 17221855 -264971809 - L2 LINE L2 -11 3261 3156 23 0 0 0 chr1 17222473 17222496 -264971168 + AT_rich Low_complexity Low_complexity 1 23 0 3509 46 16 2 chr1 17222496 17222929 -264970735 - L1PA5 LINE L1 0 6154 5716 2040 277 32 17 chr1 17222929 17223418 -264970246 - MER69 DNA AcHobo -1866 660 157 2314 117 3 0 chr1 17223418 17223718 -264969946 - AluSx SINE Alu -11 301 1 2040 277 32 17 chr1 17223718 17223878 -264969786 - MER69 DNA AcHobo -2369 157 1 2396 65 3 19 chr1 17225390 17225700 -264967964 - AluY SINE Alu -6 305 1 28 29 0 0 chr1 17226139 17226174 -264967490 + AT_rich Low_complexity Low_complexity 1 35 0 1492 266 148 43 chr1 17226266 17226844 -264966820 + L2 LINE L2 2282 2798 -515 2157 116 7 0 chr1 17226844 17227321 -264966343 - AluSq SINE Alu 0 484 6 1492 266 148 43 chr1 17227321 17227508 -264966156 + L2 LINE L2 2798 2964 -349 2267 102 0 13 chr1 17227508 17227823 -264965841 - AluY SINE Alu 0 311 1 1492 266 148 43 chr1 17227823 17227963 -264965701 + L2 LINE L2 2964 3308 -5 452 229 42 72 chr1 17227984 17228150 -264965514 + MIR SINE MIR 9 169 -93 207 208 42 0 chr1 17228128 17228176 -264965488 + L2 LINE L2 3216 3265 -7 * 258 365 10 0 chr1 17228771 17228875 -264964789 + L3 LINE CR1 1376 1480 -97 1611 163 39 14 chr1 17229134 17229417 -264964247 + AluJo SINE Alu 1 290 -22 231 114 0 0 chr1 17229422 17229457 -264964207 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 263 179 60 0 chr1 17229907 17229974 -264963690 + CT-rich Low_complexity Low_complexity 2 72 0 2491 82 0 0 chr1 17230074 17230378 -264963286 - AluSg SINE Alu -6 304 1 2321 103 0 0 chr1 17230870 17231162 -264962502 + AluSg SINE Alu 1 292 -18 223 209 23 0 chr1 17231602 17231645 -264962019 + L2 LINE L2 3224 3267 -5 180 331 86 36 chr1 17231962 17232101 -264961563 - L2 LINE L2 -2 3270 3125 276 304 137 25 chr1 17232432 17232593 -264961071 + MIR SINE MIR 77 255 -7 984 272 76 56 chr1 17233265 17233786 -264959878 + L2 LINE L2 2644 3153 -160 2359 86 0 3 chr1 17233786 17234076 -264959588 + AluSx SINE Alu 1 289 -23 192 111 0 0 chr1 17234079 17234115 -264959549 + (TAAAA)n Simple_repeat Simple_repeat 5 40 0 984 272 76 56 chr1 17234115 17234250 -264959414 + L2 LINE L2 3154 3310 -3 643 239 0 0 chr1 17234305 17234422 -264959242 - FRAM SINE Alu -43 133 17 525 294 95 12 chr1 17234465 17234696 -264958968 - MIR SINE MIR -12 250 3 677 303 117 26 chr1 17234902 17235321 -264958343 + L2 LINE L2 2624 3117 -196 1895 134 14 10 chr1 17235321 17235612 -264958052 - AluJo SINE Alu -20 292 1 677 303 117 26 chr1 17235612 17235806 -264957858 + L2 LINE L2 3117 3292 -21 195 224 20 41 chr1 17238911 17238960 -264954704 - MIR SINE MIR -73 135 88 300 294 0 0 chr1 17239444 17239512 -264954152 + MIR SINE MIR 36 103 -105 2234 80 28 0 chr1 17239708 17239994 -264953670 - AluSg SINE Alu -16 294 1 302 183 14 0 chr1 17243816 17243887 -264949777 + CT-rich Low_complexity Low_complexity 1 72 0 360 43 0 0 chr1 17244230 17244276 -264949388 + (CA)n Simple_repeat Simple_repeat 1 46 0 342 0 0 0 chr1 17249391 17249429 -264944235 + (CA)n Simple_repeat Simple_repeat 1 38 0 239 177 242 0 chr1 17251062 17251124 -264942540 + L2 LINE L2 3123 3199 -73 290 313 78 9 chr1 17251184 17251299 -264942365 + L2 LINE L2 3125 3247 -25 2269 116 0 10 chr1 17251414 17251725 -264941939 - AluSc SINE Alu -1 308 1 307 304 156 30 chr1 17251995 17252232 -264941432 + L2 LINE L2 2124 2390 -924 272 234 123 64 chr1 17252948 17253119 -264940545 + L3b LINE CR1 1202 1382 -201 197 0 71 0 chr1 17253151 17253179 -264940485 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 714 279 6 17 chr1 17254252 17254431 -264939233 + MER5B DNA MER1_type 2 178 0 2316 100 0 3 chr1 17255181 17255480 -264938184 - AluSg SINE Alu -12 298 1 1849 168 7 10 chr1 17255630 17255928 -264937736 + AluJo SINE Alu 1 297 -15 414 227 163 7 chr1 17255930 17256071 -264937593 - MIR SINE MIR 0 262 100 271 339 24 16 chr1 17256077 17256204 -264937460 - L2 LINE L2 -788 2526 2399 464 262 170 27 chr1 17258419 17258787 -264934877 + L2 LINE L2 2628 3069 -244 369 187 13 0 chr1 17258822 17258897 -264934767 - MLT1A1 LTR MaLR -1 364 289 213 39 0 0 chr1 17259024 17259050 -264934614 + (TG)n Simple_repeat Simple_repeat 2 27 0 605 273 118 30 chr1 17259229 17259371 -264934293 + MLT1J1 LTR MaLR 12 140 -306 2238 115 3 0 chr1 17259371 17259667 -264933997 + AluSq SINE Alu 1 297 -16 605 273 118 30 chr1 17259667 17259821 -264933843 + MLT1J1 LTR MaLR 140 334 -112 359 333 67 0 chr1 17260207 17260372 -264933292 + MER117 DNA MER1_type 4 179 -18 195 338 6 88 chr1 17260417 17260577 -264933087 - MER5A DNA MER1_type -26 163 17 303 266 0 0 chr1 17260655 17260734 -264932930 + MIR SINE MIR 135 213 -49 444 322 75 11 chr1 17262235 17262409 -264931255 + MIR SINE MIR 35 219 -43 215 311 29 29 chr1 17262949 17263052 -264930612 + L2 LINE L2 2951 3053 -219 186 43 0 0 chr1 17263063 17263086 -264930578 + (TC)n Simple_repeat Simple_repeat 2 24 0 196 200 0 0 chr1 17263217 17263252 -264930412 + L2 LINE L2 3271 3305 -8 298 287 75 78 chr1 17263422 17263899 -264929765 - LTR33 LTR ERVL -5 516 41 1375 193 56 3 chr1 17264319 17264581 -264929083 + AluJo SINE Alu 1 278 -34 286 250 40 0 chr1 17265754 17265854 -264927810 + L1ME4a LINE L1 6014 6117 -4 326 191 0 29 chr1 17265998 17266066 -264927598 + MIR SINE MIR 173 238 -24 201 204 45 0 chr1 17266033 17266077 -264927587 + L2 LINE L2 3210 3255 -17 * 1118 160 109 138 chr1 17266497 17266873 -264926791 - MLT1A1 LTR MaLR 0 365 1 614 265 38 11 chr1 17266904 17267089 -264926575 - MIR SINE MIR -36 226 37 754 181 0 43 chr1 17267261 17267399 -264926265 - FLAM_C SINE Alu -1 132 1 1584 168 6 44 chr1 17267401 17267717 -264925947 - AluJb SINE Alu -8 304 1 207 217 0 50 chr1 17268341 17268401 -264925263 - MIR SINE MIR -64 144 88 578 92 0 82 chr1 17271007 17271105 -264922559 + HY4 scRNA scRNA 1 90 -3 540 68 0 0 chr1 17271105 17271178 -264922486 + (GAA)n Simple_repeat Simple_repeat 1 73 0 631 197 73 0 chr1 17271866 17272003 -264921661 + U1 snRNA snRNA 5 151 -14 359 206 0 0 chr1 17272497 17272565 -264921099 - tRNA-His-CAC tRNA tRNA -2 73 6 25 0 0 0 chr1 17272613 17272638 -264921026 + AT_rich Low_complexity Low_complexity 1 25 0 1705 118 59 15 chr1 17272640 17272910 -264920754 - AluSx SINE Alu -30 282 1 589 68 0 0 chr1 17273599 17273673 -264919991 + tRNA-Asn-AAC tRNA tRNA 1 74 -3 477 177 105 57 chr1 17273698 17273822 -264919842 + FLAM_C SINE Alu 2 131 -12 566 251 195 21 chr1 17274038 17274198 -264919466 - L1MEc LINE L1 -4356 2040 1909 1659 163 6 31 chr1 17274198 17274518 -264919146 - AluSx SINE Alu 0 312 1 566 251 195 21 chr1 17274518 17274644 -264919020 - L1MEc LINE L1 -4487 1909 1704 1646 91 0 0 chr1 17274712 17274933 -264918731 + AluY SINE Alu 1 221 -90 2736 305 51 54 chr1 17274933 17275679 -264917985 + PRIMA41-int LTR ERV1 4072 4819 -2937 1929 113 52 0 chr1 17275679 17275970 -264917694 + AluSx SINE Alu 1 306 -6 2736 305 51 54 chr1 17275970 17276886 -264916778 + PRIMA41-int LTR ERV1 4819 5700 -2056 1013 160 16 27 chr1 17277764 17277952 -264915712 + MER1B DNA MER1_type 152 337 -2 2872 140 49 46 chr1 17277964 17278534 -264915130 + LTR8A LTR ERV1 156 727 0 309 357 83 0 chr1 17278550 17278707 -264914957 - HAL1 LINE L1 -1811 696 527 3220 120 37 4 chr1 17278822 17279304 -264914360 - MER41E LTR ERV1 0 512 15 276 299 51 26 chr1 17279903 17280020 -264913644 + Charlie4 DNA MER1_type 1838 1957 -4 1535 0 0 0 chr1 17280404 17280568 -264913096 + U1 snRNA snRNA 1 164 -1 326 167 139 0 chr1 17281013 17281085 -264912579 - MER45B DNA AcHobo -647 393 312 479 220 80 13 chr1 17281086 17281236 -264912428 + REP3 LTR ERV 2 161 -401 1470 141 0 24 chr1 17281722 17281804 -264911860 + AluSx SINE Alu 59 141 -171 363 44 0 0 chr1 17281804 17281849 -264911815 + (TAA)n Simple_repeat Simple_repeat 2 46 0 1470 141 0 24 chr1 17281849 17282014 -264911650 + AluSx SINE Alu 141 300 -12 339 25 0 0 chr1 17282186 17282226 -264911438 + (TC)n Simple_repeat Simple_repeat 1 40 0 21 36 0 0 chr1 17283282 17283310 -264910354 + AT_rich Low_complexity Low_complexity 1 28 0 611 188 339 80 chr1 17283310 17283549 -264910115 + AluJo SINE Alu 2 302 0 599 179 0 0 chr1 17283605 17283711 -264909953 + FLAM_A SINE Alu 18 123 -19 577 186 20 0 chr1 17283716 17283818 -264909846 + FRAM SINE Alu 40 143 -33 1978 133 0 0 chr1 17283870 17284163 -264909501 - AluSx SINE Alu -17 295 3 24 32 0 0 chr1 17284337 17284368 -264909296 + AT_rich Low_complexity Low_complexity 1 31 0 2007 118 4 0 chr1 17284398 17284707 -264908957 - AluSg SINE Alu 0 310 1 1662 98 0 29 chr1 17285477 17285723 -264907941 - AluSx SINE Alu -15 297 59 486 217 84 14 chr1 17286222 17286365 -264907299 - REP3 LTR ERV -408 154 2 305 203 78 0 chr1 17286366 17286430 -264907234 + MER45B DNA AcHobo 312 380 -660 1535 0 0 0 chr1 17286891 17287055 -264906609 - U1 snRNA snRNA -1 164 1 279 304 58 22 chr1 17287439 17287577 -264906087 - Charlie4 DNA MER1_type -4 1957 1815 3301 123 29 4 chr1 17288138 17288624 -264905040 + MER41E LTR ERV1 15 512 0 309 357 83 0 chr1 17288735 17288892 -264904772 + HAL1 LINE L1 527 696 -1811 2876 145 49 47 chr1 17288908 17289482 -264904182 - LTR8A LTR ERV1 0 727 153 2000 150 9 18 chr1 17289490 17289830 -264903834 - MER1B DNA MER1_type -2 337 1 588 184 41 54 chr1 17289833 17289980 -264903684 - LTR8 LTR ERV1 -545 146 2 620 178 17 17 chr1 17290117 17290235 -264903429 + LTR49 LTR ERV1 35 152 -443 2613 193 14 24 chr1 17290250 17290407 -264903257 + MER72 LTR ERV1 1 158 -564 4007 95 47 23 chr1 17290407 17290567 -264903097 + MER51D LTR ERV1 1 156 -501 2390 77 0 3 chr1 17290567 17290879 -264902785 + AluSx SINE Alu 1 311 -1 4007 95 47 23 chr1 17290879 17291358 -264902306 + MER51D LTR ERV1 156 655 -2 2613 193 14 24 chr1 17291358 17291709 -264901955 + MER72 LTR ERV1 158 504 -218 330 302 14 90 chr1 17291712 17291924 -264901740 + L1ME LINE L1 5544 5739 -431 1150 122 0 6 chr1 17291941 17292105 -264901559 - AluSg/x SINE Alu -16 294 132 675 13 0 0 chr1 17292570 17292645 -264901019 - tRNA-Asn-AAC tRNA tRNA -2 75 1 339 286 83 30 chr1 17293728 17293896 -264899768 - L1ME LINE L1 -320 5801 5625 527 204 30 0 chr1 17293917 17294049 -264899615 - L1MEc LINE L1 -4258 2138 2003 566 277 108 10 chr1 17294097 17294411 -264899253 - L1MEc LINE L1 -4491 1905 1561 28 61 0 0 chr1 17294520 17294569 -264899095 + AT_rich Low_complexity Low_complexity 1 49 0 416 250 19 9 chr1 17295612 17295720 -264897944 - L2 LINE L2 -797 2517 2409 3225 146 29 22 chr1 17295760 17296351 -264897313 + LTR49 LTR ERV1 1 595 0 5919 141 73 61 chr1 17296353 17297548 -264896116 + LTR49-int LTR ERV1 1 1209 -5122 301 306 14 0 chr1 17297548 17297620 -264896044 + tRNA-Glu-GAG tRNA tRNA 3 75 0 470 60 30 130 chr1 17297625 17297701 -264895963 + LTR49-int LTR ERV1 1288 1353 -4978 1863 165 0 0 chr1 17297701 17298004 -264895660 - AluSx SINE Alu -7 305 3 470 60 30 130 chr1 17298004 17298027 -264895637 + LTR49-int LTR ERV1 1353 1377 -4954 2269 126 46 118 chr1 17298029 17298323 -264895341 - L1M4c LINE L1 -4820 1564 1323 1944 121 4 0 chr1 17298323 17298603 -264895061 + AluSp SINE Alu 1 281 -32 2269 126 46 118 chr1 17298603 17298831 -264894833 - L1M4c LINE L1 -5061 1323 1080 1397 106 0 0 chr1 17299516 17299750 -264893914 + AluSg/x SINE Alu 95 328 0 220 393 43 5 chr1 17299807 17299993 -264893671 + L3 LINE CR1 66 258 -1319 342 0 0 0 chr1 17300242 17300280 -264893384 + (T)n Simple_repeat Simple_repeat 1 38 0 391 329 35 35 chr1 17300733 17300903 -264892761 - MER5B DNA MER1_type -2 176 7 2123 94 0 32 chr1 17301164 17301473 -264892191 - AluY SINE Alu -12 299 1 1800 109 48 48 chr1 17301618 17301931 -264891733 + AluSp SINE Alu 1 313 0 191 389 104 7 chr1 17302131 17302275 -264891389 + MIR3 SINE MIR 44 201 -7 1747 301 72 32 chr1 17303585 17304498 -264889166 - PRIMA41-int LTR ERV1 -2057 5699 4750 1773 127 11 7 chr1 17304499 17304783 -264888881 - AluSx SINE Alu -6 306 22 1789 164 72 40 chr1 17304883 17304929 -264888735 - L1MB3 LINE L1 -210 5973 5930 2320 70 3 3 chr1 17304929 17305227 -264888437 - AluY SINE Alu -13 298 1 1789 164 72 40 chr1 17305227 17305582 -264888082 - L1MB3 LINE L1 -253 5930 5559 1221 293 75 19 chr1 17305595 17306073 -264887591 + L2 LINE L2 2288 2792 -522 1102 199 116 157 chr1 17306073 17306416 -264887248 + MLT1A1 LTR MaLR 1 326 -70 1837 154 3 6 chr1 17306416 17306728 -264886936 - AluSx SINE Alu -1 311 1 1102 199 116 157 chr1 17306728 17306797 -264886867 + MLT1A1 LTR MaLR 326 396 0 598 301 125 28 chr1 17306852 17307204 -264886460 + L2 LINE L2 2888 3273 -40 403 223 97 0 chr1 17307600 17307703 -264885961 + MER81 DNA DNA 2 114 0 426 277 15 8 chr1 17308285 17308415 -264885249 + MER94 DNA DNA 2 132 -2 309 281 34 0 chr1 17309116 17309205 -264884459 + L2 LINE L2 3181 3272 0 337 278 80 53 chr1 17309294 17309481 -264884183 - MIR3 SINE MIR -8 200 9 260 267 85 80 chr1 17309830 17310006 -264883658 + MIR SINE MIR 77 253 -9 201 133 0 0 chr1 17310617 17310647 -264883017 - L2 LINE L2 -18 3295 3266 865 148 0 125 chr1 17310929 17311145 -264882519 + MER53 DNA DNA 1 189 0 183 42 0 0 chr1 17312868 17312892 -264880772 + (A)n Simple_repeat Simple_repeat 1 24 0 207 0 0 0 chr1 17313203 17313226 -264880438 + (TA)n Simple_repeat Simple_repeat 2 24 0 2447 30 0 7 chr1 17313240 17313540 -264880124 + AluY SINE Alu 1 298 -13 307 211 39 29 chr1 17314101 17314205 -264879459 - MLT1E2 LTR MaLR -200 305 201 493 233 0 92 chr1 17314457 17314620 -264879044 - MLT1E2 LTR MaLR -469 157 10 554 250 152 34 chr1 17314763 17314967 -264878697 - MIR SINE MIR -23 239 12 383 297 21 21 chr1 17316126 17316271 -264877393 + MIR SINE MIR 20 164 -98 628 205 23 136 chr1 17317592 17317624 -264876040 - MIR SINE MIR -18 244 210 1661 181 7 13 chr1 17317624 17317922 -264875742 + AluJo SINE Alu 1 296 -16 628 205 23 136 chr1 17317922 17318147 -264875517 - MIR SINE MIR -52 210 16 2759 206 34 15 chr1 17319606 17319833 -264873831 + LTR49 LTR ERV1 1 222 -373 2077 108 3 7 chr1 17319833 17320119 -264873545 + AluSx SINE Alu 23 307 -5 2759 206 34 15 chr1 17320119 17320475 -264873189 + LTR49 LTR ERV1 222 595 0 2838 29 0 0 chr1 17320888 17321202 -264872462 - AluYb8 SINE Alu -4 314 1 3267 118 14 27 chr1 17321288 17321806 -264871858 - MER9 LTR ERVK 0 511 1 1527 203 17 48 chr1 17322674 17323028 -264870636 - MLT1A1 LTR MaLR -2 363 21 268 280 83 32 chr1 17323196 17323568 -264870096 + L1ME3A LINE L1 4346 4736 -1410 698 244 24 28 chr1 17323596 17323809 -264869855 - MER20 DNA MER1_type -4 215 4 299 278 61 33 chr1 17323811 17324023 -264869641 + L1ME3A LINE L1 5653 5870 -300 246 197 66 26 chr1 17324757 17324833 -264868831 - MADE1 DNA Mariner 0 80 2 229 172 17 17 chr1 17325450 17325508 -264868156 + (TA)n Simple_repeat Simple_repeat 1 58 0 243 0 0 0 chr1 17325886 17325913 -264867751 + (CA)n Simple_repeat Simple_repeat 2 28 0 25 0 0 0 chr1 17327240 17327265 -264866399 + AT_rich Low_complexity Low_complexity 1 25 0 184 218 40 97 chr1 17329877 17330001 -264863663 - MIR3 SINE MIR -6 202 86 187 279 81 54 chr1 17330489 17330600 -264863064 + L2 LINE L2 3145 3258 -14 180 297 40 0 chr1 17331085 17331159 -264862505 + MIR SINE MIR 185 261 -1 25 51 0 0 chr1 17331159 17331198 -264862466 + AT_rich Low_complexity Low_complexity 1 39 0 1297 245 58 65 chr1 17332814 17333672 -264859992 + L1ME1 LINE L1 3127 3978 -2168 1110 261 61 27 chr1 17333725 17334249 -264859415 + L1ME1 LINE L1 5394 5935 -231 542 295 35 10 chr1 17334539 17334739 -264858925 - MER63A DNA MER1_type -3 207 3 716 192 151 32 chr1 17335566 17335785 -264857879 - THE1C LTR MaLR -130 245 1 1246 236 13 3 chr1 17335785 17336086 -264857578 - L1 LINE L1 -2372 5193 4890 1662 128 0 12 chr1 17336090 17336340 -264857324 + THE1C LTR MaLR 129 375 0 1070 254 95 41 chr1 17336350 17337361 -264856303 - L1 LINE L1 -3552 4013 2932 9000 129 54 0 chr1 17337461 17338800 -264854864 + THE1C-int LTR MaLR 164 1574 -6 1233 167 41 37 chr1 17338805 17339051 -264854613 + THE1C LTR MaLR 1 247 -128 940 145 101 0 chr1 17339176 17339335 -264854329 - AluSg SINE Alu -130 180 6 2377 71 0 0 chr1 17339345 17339662 -264854002 - AluY SINE Alu 0 317 1 9528 85 12 7 chr1 17339667 17340918 -264852746 + HERVL LTR ERVL 119 1375 -4279 683 302 40 52 chr1 17341020 17341421 -264852243 - PRIMA41-int LTR ERV1 -3018 4738 4343 1762 68 5 5 chr1 17341751 17341972 -264851692 - AluY SINE Alu -90 221 1 413 228 157 117 chr1 17342036 17342162 -264851502 + L1MEc LINE L1 1704 1823 -4573 1826 158 7 0 chr1 17342162 17342447 -264851217 + AluSx SINE Alu 1 287 -25 413 228 157 117 chr1 17342447 17342644 -264851020 + L1MEc LINE L1 1823 2040 -4356 389 236 89 49 chr1 17342862 17342985 -264850679 - FLAM_C SINE Alu -5 128 1 573 68 0 0 chr1 17343005 17343079 -264850585 - tRNA-Asn-AAC tRNA tRNA -3 74 1 2099 122 0 14 chr1 17343766 17344061 -264849603 + AluSx SINE Alu 1 291 -21 390 176 0 0 chr1 17344126 17344194 -264849470 + tRNA-His-CAC tRNA tRNA 6 73 -2 638 187 72 0 chr1 17344693 17344832 -264848832 - U1 snRNA snRNA -14 151 3 566 56 0 0 chr1 17345887 17345959 -264847705 - tRNA-Glu-GAG tRNA tRNA -3 72 1 302 304 25 19 chr1 17346452 17346613 -264847051 + L2 LINE L2 2351 2512 -802 325 200 51 120 chr1 17346697 17346872 -264846792 - MER20 DNA MER1_type -56 163 1 1134 179 24 32 chr1 17347756 17348002 -264845662 - MLT1A1 LTR MaLR 0 365 122 2605 88 8 0 chr1 17348179 17348531 -264845133 - THE1A LTR MaLR 0 355 1 745 274 128 38 chr1 17348614 17349121 -264844543 + L1ME2 LINE L1 4695 5247 -899 4913 174 21 13 chr1 17350806 17351718 -264841946 + MER49 LTR ERV1 5 923 0 8679 51 21 100 chr1 17351785 17353736 -264839928 + L1PA8 LINE L1 4293 6172 0 424 245 54 44 chr1 17353750 17353954 -264839710 + L1ME2 LINE L1 5264 5469 -709 583 154 0 0 chr1 17353956 17354047 -264839617 - AluJb SINE Alu -13 299 209 * 733 110 0 0 chr1 17354042 17354142 -264839522 - AluSc SINE Alu -130 179 80 327 291 155 0 chr1 17354145 17354293 -264839371 + L1ME2 LINE L1 5461 5631 -531 747 227 91 49 chr1 17354379 17354687 -264838977 + L1ME2 LINE L1 5831 6151 -13 617 156 0 0 chr1 17354701 17354797 -264838867 + AluSg/x SINE Alu 193 288 -22 344 188 14 14 chr1 17355250 17355319 -264838345 - tRNA-His-CAC tRNA tRNA -3 72 4 2297 106 7 0 chr1 17355572 17355875 -264837789 - AluSx SINE Alu -7 305 1 574 56 0 0 chr1 17356548 17356619 -264837045 - tRNA-Gly-GGG tRNA tRNA 0 74 4 396 233 0 0 chr1 17358269 17358342 -264835322 - tRNA-Val-GTG tRNA tRNA -3 73 1 202 206 0 0 chr1 17359393 17359427 -264834237 + polypyrimidine Low_complexity Low_complexity 1 34 0 885 86 17 0 chr1 17359440 17359557 -264834107 + AluSg/x SINE Alu 168 286 -26 1499 160 30 4 chr1 17360118 17360381 -264833283 - L1M2 LINE L1 -633 5658 5389 2424 79 0 22 chr1 17362398 17362716 -264830948 + AluY SINE Alu 1 311 0 1350 80 5 37 chr1 17366482 17366669 -264826995 + AluSp SINE Alu 125 305 -8 2307 86 3 68 chr1 17367198 17367575 -264826089 + AluSx SINE Alu 1 356 0 180 267 33 0 chr1 17367617 17367677 -264825987 - MIR SINE MIR -71 191 130 488 236 36 0 chr1 17367678 17367788 -264825876 - L2 LINE L2 -4 3268 3155 193 246 0 62 chr1 17367821 17367886 -264825778 + MIR SINE MIR 62 122 -86 2463 78 0 3 chr1 17368679 17368986 -264824678 + AluSg SINE Alu 2 307 -3 2222 106 0 3 chr1 17369001 17369283 -264824381 + AluSg SINE Alu 1 281 -29 1200 130 30 0 chr1 17369288 17369457 -264824207 + AluSg/x SINE Alu 121 294 -18 210 251 185 20 chr1 17369536 17369731 -264823933 + L2 LINE L2 2887 3113 -200 2010 122 21 11 chr1 17369751 17370038 -264823626 - AluSx SINE Alu -22 290 1 629 320 89 0 chr1 17371995 17372220 -264821444 + MIR SINE MIR 17 261 -1 22 56 0 0 chr1 17372223 17372259 -264821405 + AT_rich Low_complexity Low_complexity 1 36 0 1807 169 0 3 chr1 17372284 17372579 -264821085 - AluJo SINE Alu -1 311 18 2217 134 0 0 chr1 17374379 17374686 -264818978 + AluSx SINE Alu 1 307 -5 507 225 58 68 chr1 17374754 17374945 -264818719 + MER53 DNA DNA 1 189 0 2490 60 17 3 chr1 17375291 17375593 -264818071 + AluSg SINE Alu 1 306 -4 298 304 15 24 chr1 17376503 17376627 -264817037 + MIR SINE MIR 37 162 -63 717 240 39 20 chr1 17377586 17377790 -264815874 + MIR SINE MIR 43 250 -12 3786 114 28 12 chr1 17378492 17379098 -264814566 + MER39B LTR ERV1 1 616 -37 2045 136 9 19 chr1 17379138 17379454 -264814210 + AluSq SINE Alu 1 313 0 305 300 117 0 chr1 17379468 17379588 -264814076 + L1M4 LINE L1 3113 3246 -2900 210 180 0 60 chr1 17380869 17380919 -264812745 + L2 LINE L2 3218 3264 -8 284 263 97 9 chr1 17381391 17381505 -264812159 - MIR SINE MIR -101 161 38 433 269 45 64 chr1 17381775 17382039 -264811625 - MER97c DNA MER1_type? -20 1070 812 358 197 0 0 chr1 17382420 17382491 -264811173 - MER97c DNA MER1_type? -485 605 535 723 100 0 54 chr1 17383330 17383460 -264810204 + FLAM_A SINE Alu 20 142 0 3253 245 66 35 chr1 17383785 17384157 -264809507 + L1ME3A LINE L1 2860 3219 -2951 2157 103 23 7 chr1 17384157 17384458 -264809206 + AluSp SINE Alu 1 306 -7 3253 245 66 35 chr1 17384458 17386103 -264807561 + L1ME3A LINE L1 3219 5721 -449 2367 114 78 24 chr1 17386103 17386514 -264807150 + Tigger2a DNA MER2_type 1 433 -1 3253 245 66 35 chr1 17386514 17386965 -264806699 + L1ME3A LINE L1 5721 6157 -13 365 323 39 0 chr1 17386981 17387136 -264806528 + MIR SINE MIR 72 232 -30 1585 110 196 8 chr1 17387309 17387564 -264806100 + AluSg1 SINE Alu 1 303 -6 445 298 13 20 chr1 17388297 17388448 -264805216 + MER5A DNA MER1_type 37 186 -3 225 65 0 0 chr1 17389204 17389235 -264804429 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 234 275 113 12 chr1 17389780 17389860 -264803804 - L2 LINE L2 -14 3299 3212 247 216 0 0 chr1 17389917 17389968 -264803696 - LTR67 LTR ERVL 0 557 507 342 276 69 18 chr1 17390572 17390733 -264802931 + MIR SINE MIR 42 215 -47 2301 74 0 11 chr1 17390844 17391154 -264802510 + AluY SINE Alu 1 307 0 195 337 36 12 chr1 17392863 17392946 -264800718 + L2 LINE L2 3208 3292 -21 4609 218 61 42 chr1 17393015 17395385 -264798279 + L1MD2 LINE L1 3920 6357 -2 198 0 0 0 chr1 17395724 17395746 -264797918 + (CAAG)n Simple_repeat Simple_repeat 3 24 0 194 400 72 16 chr1 17396771 17396896 -264796768 - L2 LINE L2 -4 3268 3137 829 270 169 34 chr1 17396909 17397353 -264796311 - MLT1J LTR MaLR -1 510 7 472 168 37 19 chr1 17398459 17398620 -264795044 + CT-rich Low_complexity Low_complexity 3 166 0 1551 284 129 36 chr1 17398655 17399061 -264794603 + L2 LINE L2 1985 2352 -961 2869 106 7 2 chr1 17399061 17399487 -264794177 + MSTA LTR MaLR 1 428 0 1551 284 129 36 chr1 17399487 17400297 -264793367 + L2 LINE L2 2352 3313 0 332 356 94 0 chr1 17400306 17400455 -264793209 + MIR SINE MIR 63 225 -37 235 310 166 0 chr1 17402248 17402393 -264791271 + MIR SINE MIR 86 254 -8 200 282 165 53 chr1 17403270 17403458 -264790206 + L2 LINE L2 3080 3288 -25 188 333 17 0 chr1 17403462 17403522 -264790142 - L2 LINE L2 -4 3309 3249 2093 197 69 6 chr1 17403605 17404071 -264789593 - MLT1D LTR MaLR -7 498 4 1356 228 110 21 chr1 17404296 17404488 -264789176 + MLT1C LTR MaLR 1 175 -292 195 42 0 0 chr1 17404488 17404512 -264789152 + (CAGAGA)n Simple_repeat Simple_repeat 6 29 0 1356 228 110 21 chr1 17404512 17404748 -264788916 + MLT1C LTR MaLR 175 467 0 2391 88 0 3 chr1 17405580 17405876 -264787788 - AluSx SINE Alu -17 295 1 675 295 92 38 chr1 17405876 17406409 -264787255 - L2 LINE L2 -7 3306 2736 552 15 0 0 chr1 17406413 17406478 -264787186 + (TG)n Simple_repeat Simple_repeat 1 65 0 396 243 0 0 chr1 17406512 17406623 -264787041 + CT-rich Low_complexity Low_complexity 3 113 0 478 281 88 26 chr1 17407140 17407332 -264786332 + MER63A DNA MER1_type 1 204 -6 451 333 52 0 chr1 17407613 17407748 -264785916 + MIR3 SINE MIR 28 169 -39 1092 184 128 3 chr1 17410224 17410512 -264783152 - MER33 DNA MER1_type 0 324 1 450 265 176 10 chr1 17411207 17411411 -264782253 - Charlie5 DNA MER1_type -27 2585 2348 195 129 0 0 chr1 17412285 17412316 -264781348 + (TCC)n Simple_repeat Simple_repeat 3 33 0 195 42 0 0 chr1 17414802 17414826 -264778838 + (CCA)n Simple_repeat Simple_repeat 1 24 0 566 255 148 5 chr1 17414907 17415103 -264778561 + MIR SINE MIR 36 259 -3 630 305 114 31 chr1 17415148 17415947 -264777717 - L2 LINE L2 -177 3095 2216 257 146 62 0 chr1 17416076 17416124 -264777540 + MLT1C LTR MaLR 100 150 -317 1102 212 82 0 chr1 17420788 17421057 -264772607 - Charlie1a DNA MER1_type -1116 339 49 27 0 0 0 chr1 17421323 17421350 -264772314 + AT_rich Low_complexity Low_complexity 1 27 0 317 236 143 14 chr1 17421652 17421792 -264771872 + MIR SINE MIR 96 253 -9 211 293 0 0 chr1 17421792 17421850 -264771814 + (TAG)n Simple_repeat Simple_repeat 1 58 0 344 349 77 13 chr1 17422168 17422403 -264771261 + MIR SINE MIR 1 250 -12 199 256 37 12 chr1 17423185 17423267 -264770397 - MIR3 SINE MIR -12 196 113 915 169 45 0 chr1 17423871 17424049 -264769615 - MER5A DNA MER1_type -1 188 3 484 88 0 0 chr1 17424424 17424492 -264769172 - Alu SINE Alu -15 297 230 1904 109 26 8 chr1 17424492 17424759 -264768905 - AluSx SINE Alu -40 272 1 238 252 98 49 chr1 17428104 17428227 -264765437 + L2 LINE L2 3144 3272 0 2236 107 0 0 chr1 17428444 17428725 -264764939 + AluSx SINE Alu 1 281 -31 261 57 0 0 chr1 17428725 17428760 -264764904 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 308 157 56 192 chr1 17429053 17429213 -264764451 + AluJb SINE Alu 88 206 -96 235 91 0 0 chr1 17429601 17429634 -264764030 - U1 snRNA snRNA 0 165 133 1508 198 134 71 chr1 17429634 17430170 -264763494 - LTR4 LTR ERV1 0 596 27 753 196 14 0 chr1 17430760 17430930 -264762734 - AluJb SINE Alu 0 311 140 1940 125 87 0 chr1 17431072 17431359 -264762305 - AluSx SINE Alu 0 312 1 450 143 119 0 chr1 17432167 17432251 -264761413 - AluSg/x SINE Alu -8 302 209 2204 241 10 23 chr1 17432252 17432770 -264760894 - MER87 LTR ERV1 -30 511 1 2071 108 54 14 chr1 17432810 17433106 -264760558 - AluSg SINE Alu -2 308 1 2059 136 4 0 chr1 17433175 17433486 -264760178 + AluSg SINE Alu 1 312 0 24 32 0 0 chr1 17433510 17433541 -264760123 + AT_rich Low_complexity Low_complexity 1 31 0 2164 135 0 0 chr1 17433710 17434014 -264759650 + AluSx SINE Alu 3 306 -6 21 36 0 0 chr1 17434024 17434052 -264759612 + AT_rich Low_complexity Low_complexity 1 28 0 590 167 20 0 chr1 17434055 17434157 -264759507 - FRAM SINE Alu -33 143 40 545 189 0 0 chr1 17434162 17434268 -264759396 - FLAM_A SINE Alu -19 123 18 608 176 340 80 chr1 17434323 17434561 -264759103 - AluJo SINE Alu -1 301 2 21 36 0 0 chr1 17434561 17434589 -264759075 + AT_rich Low_complexity Low_complexity 1 28 0 393 22 0 0 chr1 17435645 17435691 -264757973 + (GA)n Simple_repeat Simple_repeat 1 46 0 1691 122 0 24 chr1 17435864 17436027 -264757637 - AluSx SINE Alu -14 298 141 249 33 0 0 chr1 17436027 17436057 -264757607 + (TTA)n Simple_repeat Simple_repeat 2 31 0 1691 122 0 24 chr1 17436057 17436139 -264757525 - AluSx SINE Alu -171 141 59 462 227 80 13 chr1 17436625 17436775 -264756889 - REP3 LTR ERV -401 161 2 1462 0 0 0 chr1 17437281 17437445 -264756219 - U1 snRNA snRNA -1 164 1 289 319 51 14 chr1 17437829 17437967 -264755697 - Charlie4 DNA MER1_type -4 1957 1815 3036 131 37 4 chr1 17438546 17439028 -264754636 + MER41E LTR ERV1 15 512 0 226 350 83 0 chr1 17439143 17439300 -264754364 + HAL1 LINE L1 527 696 -1811 2740 142 49 46 chr1 17439316 17439886 -264753778 - LTR8A LTR ERV1 0 727 156 919 170 16 27 chr1 17439898 17440086 -264753578 - MER1B DNA MER1_type -2 337 152 1834 308 68 27 chr1 17440965 17441878 -264751786 - PRIMA41-int LTR ERV1 -2057 5699 4750 2417 99 8 0 chr1 17442003 17442355 -264751309 - THE1A LTR MaLR 0 355 1 585 292 124 38 chr1 17442440 17442947 -264750717 + L1M4 LINE L1 4697 5247 -899 1999 57 54 50 chr1 17444139 17444461 -264749203 + AluY SINE Alu 1 323 0 460 251 84 52 chr1 17444800 17444962 -264748702 + L1ME2 LINE L1 5000 5155 -1019 4492 184 19 14 chr1 17444962 17445877 -264747787 + MER49 LTR ERV1 5 923 0 460 251 84 52 chr1 17445877 17445944 -264747720 + L1ME2 LINE L1 5155 5218 -956 8335 47 3 0 chr1 17445944 17447793 -264745871 + L1PA4 LINE L1 4293 6151 -4 460 251 84 52 chr1 17447793 17448021 -264745643 + L1ME2 LINE L1 5218 5471 -703 523 169 0 0 chr1 17448021 17448110 -264745554 - AluJb SINE Alu -15 297 209 * 692 120 0 0 chr1 17448105 17448205 -264745459 - AluSg/x SINE Alu -131 179 80 311 311 155 0 chr1 17448208 17448356 -264745308 + L1ME2 LINE L1 5461 5631 -531 674 238 94 49 chr1 17448442 17448749 -264744915 + L1ME2 LINE L1 5831 6151 -13 600 146 0 0 chr1 17448763 17448859 -264744805 + AluSg/x SINE Alu 192 287 -22 334 232 0 0 chr1 17449312 17449381 -264744283 - tRNA-His-CAC tRNA tRNA -3 72 4 2246 108 10 0 chr1 17449633 17449929 -264743735 - AluSx SINE Alu -13 299 1 565 54 0 0 chr1 17450602 17450676 -264742988 - tRNA-Gly-GGG tRNA tRNA 0 74 1 430 206 0 0 chr1 17452322 17452395 -264741269 - tRNA-Val-GTG tRNA tRNA -3 73 1 910 77 17 0 chr1 17453493 17453610 -264740054 + AluSg/x SINE Alu 168 286 -26 1406 164 30 4 chr1 17454174 17454437 -264739227 - L1M2 LINE L1 -633 5658 5389 2436 82 0 22 chr1 17456456 17456774 -264736890 + AluY SINE Alu 1 311 0 1350 80 5 37 chr1 17460540 17460727 -264732937 + AluSp SINE Alu 125 305 -8 2299 86 3 68 chr1 17461254 17461630 -264732034 + AluSx SINE Alu 1 355 0 180 267 33 0 chr1 17461672 17461732 -264731932 - MIR SINE MIR -71 191 130 488 236 36 0 chr1 17461733 17461843 -264731821 - L2 LINE L2 -4 3268 3155 193 246 0 62 chr1 17461876 17461941 -264731723 + MIR SINE MIR 62 122 -86 2476 75 0 3 chr1 17462734 17463041 -264730623 + AluSg SINE Alu 2 307 -3 2177 107 4 4 chr1 17463056 17463337 -264730327 + AluSg SINE Alu 1 281 -29 1200 130 30 0 chr1 17463342 17463511 -264730153 + AluSg/x SINE Alu 119 292 -18 221 246 185 20 chr1 17463590 17463785 -264729879 + L2 LINE L2 2887 3113 -200 2009 122 21 11 chr1 17463805 17464092 -264729572 - AluSx SINE Alu -22 290 1 629 320 89 0 chr1 17466053 17466278 -264727386 + MIR SINE MIR 17 261 -1 22 56 0 0 chr1 17466281 17466317 -264727347 + AT_rich Low_complexity Low_complexity 1 36 0 1807 169 0 3 chr1 17466342 17466637 -264727027 - AluJo SINE Alu -1 311 18 2089 134 0 0 chr1 17468437 17468744 -264724920 + AluSx SINE Alu 1 307 -5 517 225 58 68 chr1 17468812 17469003 -264724661 + MER53 DNA DNA 1 189 0 2344 60 17 3 chr1 17469347 17469647 -264724017 + AluSg SINE Alu 1 304 -6 248 198 10 59 chr1 17470077 17470178 -264723486 + (CGGGG)n Simple_repeat Simple_repeat 5 100 0 22 35 0 0 chr1 17470420 17470449 -264723215 + GC_rich Low_complexity Low_complexity 1 29 0 202 184 0 0 chr1 17470747 17470785 -264722879 - MIR SINE MIR -67 141 104 186 400 103 0 chr1 17470967 17471142 -264722522 - MIR SINE MIR -65 197 5 193 368 23 0 chr1 17471788 17471875 -264721789 - MIR SINE MIR -1 261 173 2139 69 0 35 chr1 17471910 17472223 -264721441 + AluSc SINE Alu 1 303 0 2097 103 34 0 chr1 17472232 17472523 -264721141 + AluSq SINE Alu 1 301 -12 338 302 63 16 chr1 17472571 17472697 -264720967 - MIR SINE MIR -100 162 31 201 213 138 12 chr1 17473678 17473758 -264719906 - MIR SINE MIR -74 134 45 278 316 13 19 chr1 17474291 17474446 -264719218 + (CA)n Simple_repeat Simple_repeat 2 155 0 250 234 39 0 chr1 17475077 17475154 -264718510 + C-rich Low_complexity Low_complexity 5 84 0 214 232 49 0 chr1 17478108 17478190 -264715474 + (CCCG)n Simple_repeat Simple_repeat 4 89 0 222 37 0 0 chr1 17478407 17478434 -264715230 + (CCG)n Simple_repeat Simple_repeat 2 28 0 192 219 47 0 chr1 17478766 17478830 -264714834 + MIR SINE MIR 55 121 -87 201 250 0 83 chr1 17479767 17479887 -264713777 + C-rich Low_complexity Low_complexity 5 114 0 1631 95 0 13 chr1 17481636 17481867 -264711797 - AluSg/x SINE Alu 0 310 83 226 100 0 0 chr1 17481867 17481897 -264711767 - Alu SINE Alu -273 30 1 426 167 42 19 chr1 17482051 17482152 -264711512 - MER5A DNA MER1_type -83 106 5 183 295 123 33 chr1 17482143 17482265 -264711399 + MIR3 SINE MIR 13 145 -63 * 193 217 11 130 chr1 17482298 17482331 -264711333 - L2 LINE L2 -1 3271 3236 2278 100 0 3 chr1 17482331 17482641 -264711023 - AluSx SINE Alu -3 309 1 193 217 11 130 chr1 17482641 17482699 -264710965 - L2 LINE L2 -36 3236 3191 201 272 88 44 chr1 17482836 17482972 -264710692 - L2 LINE L2 -166 3106 2965 206 79 0 26 chr1 17485478 17485516 -264708148 + (CCCG)n Simple_repeat Simple_repeat 3 39 0 894 179 39 5 chr1 17487170 17487377 -264706287 - Charlie5 DNA MER1_type -27 2585 2372 1376 143 6 146 chr1 17487378 17487509 -264706155 + AluJb SINE Alu 1 149 -163 1993 118 17 0 chr1 17487509 17487805 -264705859 - AluSq SINE Alu -12 301 1 2281 97 0 0 chr1 17487805 17488105 -264705559 - AluSq SINE Alu -13 300 1 1376 143 6 146 chr1 17488105 17488139 -264705525 + AluJb SINE Alu 148 185 -127 2121 118 0 7 chr1 17488139 17488436 -264705228 + AluSx SINE Alu 1 295 -17 1376 143 6 146 chr1 17488436 17488447 -264705217 + AluJb SINE Alu 185 196 -116 2346 80 0 0 chr1 17488447 17488746 -264704918 + AluSx SINE Alu 1 299 -13 1376 143 6 146 chr1 17488746 17488895 -264704769 + AluJb SINE Alu 196 283 -29 396 0 0 0 chr1 17488895 17488939 -264704725 + (TAA)n Simple_repeat Simple_repeat 2 45 0 235 269 46 56 chr1 17490183 17490291 -264703373 - L2 LINE L2 -7 3265 3159 589 195 57 0 chr1 17490704 17490827 -264702837 + MER3 DNA MER1_type 80 209 0 277 204 0 0 chr1 17490784 17490833 -264702831 - MER3 DNA MER1_type -119 90 42 * 342 0 0 0 chr1 17491510 17491548 -264702116 + (TAA)n Simple_repeat Simple_repeat 1 38 0 180 0 0 0 chr1 17492592 17492612 -264701052 + (A)n Simple_repeat Simple_repeat 1 20 0 22 0 0 0 chr1 17493234 17493256 -264700408 + AT_rich Low_complexity Low_complexity 1 22 0 212 0 0 35 chr1 17493469 17493498 -264700166 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 203 189 0 0 chr1 17494869 17494906 -264698758 + A-rich Low_complexity Low_complexity 1 37 0 496 285 180 10 chr1 17494930 17495130 -264698534 + MIR SINE MIR 3 236 -26 357 269 108 38 chr1 17495405 17495591 -264698073 + MIR SINE MIR 50 248 -14 180 0 0 0 chr1 17496254 17496274 -264697390 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1972 104 4 14 chr1 17496276 17496556 -264697108 - AluSg SINE Alu -33 277 1 502 153 0 0 chr1 17497881 17497953 -264695711 + tRNA-Val-GTG tRNA tRNA 1 72 -4 234 81 0 0 chr1 17497959 17497996 -264695668 + (TTTG)n Simple_repeat Simple_repeat 1 37 0 594 56 0 0 chr1 17499618 17499690 -264693974 + tRNA-Gly-GGG tRNA tRNA 1 72 -2 1998 117 10 23 chr1 17500354 17500662 -264693002 + AluSx SINE Alu 1 304 -8 336 232 0 0 chr1 17500915 17500984 -264692680 + tRNA-His-CAC tRNA tRNA 4 72 -3 556 182 0 0 chr1 17501421 17501533 -264692131 - AluSg/x SINE Alu 0 304 193 5247 40 0 0 chr1 17501539 17502210 -264691454 - L1P LINE L1 -1183 4963 4293 423 299 141 25 chr1 17502211 17502277 -264691387 - L1M4 LINE L1 -891 5255 5198 4973 172 30 16 chr1 17502277 17503183 -264690481 - MER49 LTR ERV1 0 923 5 423 299 141 25 chr1 17503183 17503217 -264690447 - L1M4 LINE L1 -948 5198 5169 2762 13 0 0 chr1 17503217 17503528 -264690136 - AluYb8 SINE Alu -7 311 1 423 299 141 25 chr1 17503528 17503667 -264689997 - L1M4 LINE L1 -977 5169 4987 1869 57 54 50 chr1 17503995 17504317 -264689347 - AluY SINE Alu 0 323 1 614 292 126 39 chr1 17505509 17506016 -264687648 - L1M4 LINE L1 -899 5247 4697 2587 99 8 0 chr1 17506101 17506453 -264687211 + THE1A LTR MaLR 1 355 0 1948 315 66 25 chr1 17506578 17507491 -264686173 + PRIMA41-int LTR ERV1 4750 5699 -2057 926 170 16 27 chr1 17508370 17508558 -264685106 + MER1B DNA MER1_type 152 337 -2 2768 142 49 46 chr1 17508570 17509140 -264684524 + LTR8A LTR ERV1 156 727 0 239 350 83 0 chr1 17509156 17509313 -264684351 - HAL1 LINE L1 -1811 696 527 3055 131 37 4 chr1 17509428 17509910 -264683754 - MER41E LTR ERV1 0 512 15 307 319 51 14 chr1 17510489 17510627 -264683037 + Charlie4 DNA MER1_type 1815 1957 -4 1541 0 0 0 chr1 17511011 17511175 -264682489 + U1 snRNA snRNA 1 164 -1 488 227 80 13 chr1 17511681 17511831 -264681833 + REP3 LTR ERV 2 161 -401 1594 122 0 24 chr1 17512317 17512399 -264681265 + AluSx SINE Alu 59 141 -171 249 33 0 0 chr1 17512399 17512429 -264681235 + (TAA)n Simple_repeat Simple_repeat 2 31 0 1594 122 0 24 chr1 17512429 17512592 -264681072 + AluSx SINE Alu 141 298 -14 393 22 0 0 chr1 17512765 17512811 -264680853 + (TC)n Simple_repeat Simple_repeat 1 46 0 21 36 0 0 chr1 17513867 17513895 -264679769 + AT_rich Low_complexity Low_complexity 1 28 0 721 218 268 8 chr1 17513895 17514134 -264679530 + AluJo SINE Alu 2 302 0 591 198 0 0 chr1 17514190 17514301 -264679363 + FLAM_A SINE Alu 18 128 -14 634 167 20 0 chr1 17514301 17514403 -264679261 + AluJo/FRAM SINE Alu 176 279 -33 21 36 0 0 chr1 17514406 17514434 -264679230 + AT_rich Low_complexity Low_complexity 1 28 0 2037 135 0 0 chr1 17514444 17514748 -264678916 - AluSx SINE Alu -6 306 3 24 32 0 0 chr1 17514917 17514948 -264678716 + AT_rich Low_complexity Low_complexity 1 31 0 1929 136 4 0 chr1 17514972 17515283 -264678381 - AluSg SINE Alu 0 312 1 1944 108 54 14 chr1 17515352 17515648 -264678016 + AluSg SINE Alu 1 308 -2 2239 241 10 23 chr1 17515688 17516206 -264677458 + MER87 LTR ERV1 1 511 -30 458 187 110 0 chr1 17516207 17516298 -264677366 + AluSg/x SINE Alu 209 309 -1 1818 125 87 0 chr1 17517096 17517383 -264676281 + AluSx SINE Alu 1 312 0 811 200 12 24 chr1 17517525 17517668 -264675996 + AluJb SINE Alu 140 287 -25 244 0 0 0 chr1 17517668 17517695 -264675969 + (CAAA)n Simple_repeat Simple_repeat 2 152 0 811 200 12 24 chr1 17517695 17517721 -264675943 + AluJb SINE Alu 287 312 0 1540 220 121 58 chr1 17518285 17518821 -264674843 + LTR4 LTR ERV1 27 596 0 238 91 0 0 chr1 17518821 17518854 -264674810 + U1 snRNA snRNA 133 165 0 348 166 57 176 chr1 17519242 17519399 -264674265 - AluJb SINE Alu -96 206 88 261 57 0 0 chr1 17519692 17519727 -264673937 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 2124 103 0 0 chr1 17519727 17520008 -264673656 - AluSx SINE Alu -31 281 1 242 252 98 49 chr1 17520225 17520348 -264673316 - L2 LINE L2 0 3272 3144 1766 112 26 8 chr1 17523693 17523960 -264669704 + AluSx SINE Alu 1 272 -40 515 88 0 0 chr1 17523960 17524028 -264669636 + Alu SINE Alu 227 294 -15 992 169 45 0 chr1 17524405 17524583 -264669081 + MER5A DNA MER1_type 3 188 -1 195 256 37 12 chr1 17525186 17525268 -264668396 + MIR3 SINE MIR 113 196 -12 327 379 68 4 chr1 17526050 17526285 -264667379 - MIR SINE MIR -12 250 1 211 293 0 0 chr1 17526604 17526662 -264667002 + (CTA)n Simple_repeat Simple_repeat 1 58 0 292 273 144 7 chr1 17526662 17526801 -264666863 - MIR SINE MIR -9 253 96 27 0 0 0 chr1 17527103 17527130 -264666534 + AT_rich Low_complexity Low_complexity 1 27 0 1054 216 82 0 chr1 17527396 17527665 -264665999 + Charlie1a DNA MER1_type 49 339 -1116 1039 208 51 0 chr1 17533898 17534095 -264659569 + MER3 DNA MER1_type 3 209 0 252 274 83 0 chr1 17534539 17534623 -264659041 - L2 LINE L2 -9 3263 3173 1852 145 7 20 chr1 17535645 17535948 -264657716 + AluJo SINE Alu 1 299 -13 6364 98 26 53 chr1 17536029 17536760 -264656904 - L1MA2 LINE L1 0 6304 5555 2242 86 0 22 chr1 17536760 17537073 -264656591 - AluY SINE Alu -5 306 1 2218 110 0 0 chr1 17537073 17537381 -264656283 - AluSq SINE Alu -2 311 4 6364 98 26 53 chr1 17537381 17537850 -264655814 - L1MA2 LINE L1 -747 5557 5133 794 193 12 6 chr1 17537916 17538082 -264655582 - L1MA10 LINE L1 0 6334 6168 189 0 0 0 chr1 17538570 17538591 -264655073 + (CTG)n Simple_repeat Simple_repeat 1 21 0 1388 185 82 4 chr1 17538854 17539124 -264654540 - AluJo SINE Alu -21 291 1 221 275 101 0 chr1 17540001 17540070 -264653594 - MIR SINE MIR -79 183 108 2320 89 0 0 chr1 17540075 17540378 -264653286 - AluSg SINE Alu -7 303 1 2045 128 3 7 chr1 17540384 17540689 -264652975 - AluSq SINE Alu -9 304 1 1105 212 9 0 chr1 17540882 17541113 -264652551 - AluJb SINE Alu -77 235 3 1055 223 116 79 chr1 17541115 17541188 -264652476 - L1MC5 LINE L1 -302 7659 7590 2092 125 0 3 chr1 17541188 17541493 -264652171 + AluSx SINE Alu 1 304 -8 1055 223 116 79 chr1 17541493 17541582 -264652082 - L1MC5 LINE L1 -371 7590 7506 1849 114 33 4 chr1 17541582 17541895 -264651769 - AluSx SINE Alu 0 321 1 1055 223 116 79 chr1 17541895 17542314 -264651350 - L1MC5 LINE L1 -455 7506 7054 1063 186 10 0 chr1 17542349 17542542 -264651122 - AluJo SINE Alu -21 291 97 31 58 0 0 chr1 17542570 17542622 -264651042 + AT_rich Low_complexity Low_complexity 1 52 0 2184 117 0 0 chr1 17542622 17542929 -264650735 + AluSx SINE Alu 1 307 -5 204 235 0 0 chr1 17543078 17543129 -264650535 + T-rich Low_complexity Low_complexity 1 51 0 2210 107 0 19 chr1 17543162 17543480 -264650184 - AluSx SINE Alu 0 312 1 381 43 0 0 chr1 17543532 17543579 -264650085 + (CA)n Simple_repeat Simple_repeat 1 47 0 1088 306 44 21 chr1 17543597 17544074 -264649590 - L1MC4a LINE L1 -1892 5916 5429 738 151 22 65 chr1 17544082 17544221 -264649443 - FLAM_A SINE Alu 0 133 1 2056 106 0 3 chr1 17544231 17544544 -264649120 - AluSx SINE Alu 0 312 1 1978 139 7 0 chr1 17545023 17545326 -264648338 + AluSx SINE Alu 1 305 -7 313 299 0 0 chr1 17545398 17545475 -264648189 - MIR SINE MIR -113 149 73 376 270 65 12 chr1 17545818 17546017 -264647647 - MIR SINE MIR -32 230 18 289 267 23 0 chr1 17546101 17546187 -264647477 + MIR SINE MIR 46 133 -75 1570 76 0 36 chr1 17547949 17547998 -264645666 + AluY SINE Alu 88 137 -174 1846 121 10 49 chr1 17547998 17548303 -264645361 + AluSq SINE Alu 3 295 -18 2284 84 0 0 chr1 17548305 17548602 -264645062 + AluY SINE Alu 2 298 -13 1570 76 0 36 chr1 17548602 17548772 -264644892 + AluY SINE Alu 138 302 -9 286 294 64 18 chr1 17549608 17549717 -264643947 - MIR SINE MIR -91 171 58 211 229 0 0 chr1 17549718 17549766 -264643898 + (TAA)n Simple_repeat Simple_repeat 3 50 0 841 259 81 0 chr1 17549787 17550023 -264643641 - MIR SINE MIR 0 262 8 321 233 94 0 chr1 17550110 17550160 -264643504 - MIR SINE MIR -31 231 187 2212 98 0 0 chr1 17550160 17550456 -264643208 + AluSx SINE Alu 1 296 -16 321 233 94 0 chr1 17550456 17550518 -264643146 - MIR SINE MIR -75 187 104 249 261 0 0 chr1 17551689 17551754 -264641910 + (TCTCTG)n Simple_repeat Simple_repeat 5 69 0 415 205 82 16 chr1 17552263 17552385 -264641279 + MIR SINE MIR 16 145 -117 1978 113 28 0 chr1 17552387 17552678 -264640986 + AluSx SINE Alu 1 299 -13 2089 100 40 0 chr1 17552990 17553290 -264640374 - AluSx SINE Alu 0 312 1 283 241 38 13 chr1 17553321 17553400 -264640264 - MIR SINE MIR -87 121 41 449 293 52 24 chr1 17554163 17554375 -264639289 + MIR SINE MIR 10 227 -35 506 273 47 17 chr1 17554758 17554930 -264638734 + MIR SINE MIR 78 254 -8 2284 67 3 0 chr1 17554934 17555250 -264638414 - AluSp SINE Alu 0 317 1 2057 125 0 0 chr1 17555257 17555546 -264638118 - AluSq SINE Alu -24 289 1 246 236 0 0 chr1 17555656 17555711 -264637953 - MIR SINE MIR -118 144 90 530 301 125 14 chr1 17556366 17556582 -264637082 + MIR SINE MIR 17 256 -6 293 377 14 0 chr1 17556647 17556785 -264636879 + MER91B DNA MER1_type 1 140 -50 2131 116 0 0 chr1 17556835 17557136 -264636528 + AluY SINE Alu 1 301 -10 293 266 224 6 chr1 17558160 17558330 -264635334 + MIR3 SINE MIR 45 250 -12 423 259 38 8 chr1 17558522 17558653 -264635011 + MIR SINE MIR 60 194 -68 225 319 37 7 chr1 17559312 17559447 -264634217 - L1ME LINE L1 -303 5818 5680 215 237 0 17 chr1 17560984 17561043 -264632621 + (CATATA)n Simple_repeat Simple_repeat 2 59 0 451 194 48 81 chr1 17561155 17561241 -264632423 + FLAM_A SINE Alu 20 102 -209 2336 90 3 0 chr1 17561241 17561542 -264632122 - AluSx SINE Alu -10 302 1 451 194 48 81 chr1 17561542 17561579 -264632085 + FLAM_A SINE Alu 102 139 -172 222 37 0 0 chr1 17561645 17561672 -264631992 + (TA)n Simple_repeat Simple_repeat 1 27 0 462 388 41 8 chr1 17561703 17561948 -264631716 + MIR SINE MIR 5 257 -5 922 191 104 0 chr1 17561982 17562223 -264631441 - L1ME2 LINE L1 -10 6154 5889 207 0 0 0 chr1 17562329 17562352 -264631312 + (TC)n Simple_repeat Simple_repeat 2 24 0 1882 143 0 11 chr1 17562352 17562639 -264631025 - AluJb SINE Alu -28 284 1 886 282 88 55 chr1 17563072 17563693 -264629971 - L2 LINE L2 -213 3059 2403 226 148 277 59 chr1 17565627 17565672 -264627992 - L1ME3A LINE L1 -11 6159 6125 1891 152 3 0 chr1 17565672 17565969 -264627695 + AluJb SINE Alu 3 300 -12 226 148 277 59 chr1 17565969 17566024 -264627640 - L1ME3A LINE L1 -45 6125 6037 664 246 149 22 chr1 17566024 17566456 -264627208 - L1ME LINE L1 -515 5655 5152 1841 154 7 7 chr1 17566456 17566762 -264626902 - AluJb SINE Alu -6 306 1 664 246 149 22 chr1 17566762 17566884 -264626780 - L1ME LINE L1 -1018 5152 5047 1787 156 6 16 chr1 17566897 17567211 -264626453 - AluJb SINE Alu -1 311 1 296 292 9 26 chr1 17567215 17567328 -264626336 - L1ME LINE L1 -1194 4952 4842 303 185 0 0 chr1 17567368 17567422 -264626242 + FLAM SINE Alu 78 131 -2 25 31 0 0 chr1 17567422 17567454 -264626210 + AT_rich Low_complexity Low_complexity 1 32 0 1849 166 10 0 chr1 17567865 17568160 -264625504 - AluJb SINE Alu -14 298 1 26 30 0 0 chr1 17568167 17568200 -264625464 + AT_rich Low_complexity Low_complexity 1 33 0 397 308 17 0 chr1 17568291 17568408 -264625256 + L2 LINE L2 3195 3313 0 460 177 71 44 chr1 17568485 17568598 -264625066 + MLT1I LTR MaLR 277 392 -17 955 152 28 28 chr1 17568833 17569011 -264624653 - AluJo SINE Alu -52 260 83 474 277 43 0 chr1 17569062 17569203 -264624461 + L2 LINE L2 2371 2517 -797 218 250 0 0 chr1 17569559 17569607 -264624057 + L2 LINE L2 3265 3312 -1 505 185 12 31 chr1 17570677 17570839 -264622825 + CT-rich Low_complexity Low_complexity 2 160 0 3158 193 27 6 chr1 17571310 17572087 -264621577 - L1MC2 LINE L1 -3 6341 5459 283 280 13 83 chr1 17572085 17572242 -264621422 - MLT1-int LTR MaLR -216 1155 1010 * 1515 205 58 11 chr1 17572351 17572712 -264620952 - L1ME2 LINE L1 -263 5901 5524 212 229 66 16 chr1 17573681 17573742 -264619922 - MIR3 SINE MIR -7 201 138 474 249 94 48 chr1 17574321 17574606 -264619058 + LTR33 LTR ERVL 9 275 -248 365 372 9 9 chr1 17574644 17574867 -264618797 + HERV16 LTR ERVL 1228 1450 -3546 626 280 45 20 chr1 17575053 17575253 -264618411 + HERV16 LTR ERVL 1799 2003 -3761 309 304 0 0 chr1 17575273 17575352 -264618312 + LTR16B LTR ERVL 1 79 -385 1903 232 61 62 chr1 17576036 17576661 -264617003 - MLT1E3 LTR MaLR 0 624 1 369 329 62 5 chr1 17576774 17576984 -264616680 + L1ME3 LINE L1 152 373 -6023 266 227 41 52 chr1 17577513 17577610 -264616054 + L1ME3 LINE L1 2713 2808 -3407 21 71 0 0 chr1 17577719 17577761 -264615903 + AT_rich Low_complexity Low_complexity 1 42 0 1283 286 31 41 chr1 17577792 17578397 -264615267 + L1ME3 LINE L1 3902 4500 -1715 420 67 0 0 chr1 17578417 17578477 -264615187 + (TG)n Simple_repeat Simple_repeat 2 61 0 192 77 0 0 chr1 17578603 17578629 -264615035 + (TA)n Simple_repeat Simple_repeat 1 26 0 559 212 20 7 chr1 17578633 17578784 -264614880 + L1ME3 LINE L1 5364 5516 -715 1231 118 0 6 chr1 17578827 17578997 -264614667 - AluSq SINE Alu -144 169 1 649 261 16 39 chr1 17579000 17579052 -264614612 + L1ME3 LINE L1 5980 6032 -199 2573 165 5 2 chr1 17579052 17579483 -264614181 + MSTB1 LTR MaLR 1 432 0 649 261 16 39 chr1 17579483 17579687 -264613977 + L1ME3 LINE L1 6032 6230 -1 248 298 97 0 chr1 17580002 17580126 -264613538 + MIR SINE MIR 54 189 -73 3658 215 34 12 chr1 17580761 17581841 -264611823 + L1MB7 LINE L1 5041 6158 -26 1917 165 10 0 chr1 17581946 17582243 -264611421 + AluJo SINE Alu 1 300 -12 275 217 51 0 chr1 17582381 17582460 -264611204 + MIR SINE MIR 47 134 -74 210 306 112 8 chr1 17582506 17582640 -264611024 + MER5A DNA MER1_type 14 161 -28 223 277 15 15 chr1 17584222 17584287 -264609377 + MIR SINE MIR 82 146 -62 1797 163 10 0 chr1 17586660 17586967 -264606697 + AluSg SINE Alu 1 310 0 424 272 7 14 chr1 17587136 17587283 -264606381 + MIR SINE MIR 96 241 -21 388 253 0 0 chr1 17588290 17588385 -264605279 - L1MB5 LINE L1 -9 6165 6071 1113 196 5 5 chr1 17591023 17591227 -264602437 + AluJb SINE Alu 1 204 -108 2417 69 0 20 chr1 17591313 17591619 -264602045 + AluY SINE Alu 1 300 -11 1924 145 6 6 chr1 17591625 17591936 -264601728 + AluSx SINE Alu 1 311 -1 1813 150 0 0 chr1 17593018 17593291 -264600373 + AluSg SINE Alu 1 273 -37 326 73 0 18 chr1 17593293 17593348 -264600316 + (TAA)n Simple_repeat Simple_repeat 1 54 0 440 265 7 14 chr1 17593501 17593648 -264600016 + MIR SINE MIR 96 241 -21 380 253 0 0 chr1 17594595 17594690 -264598974 - L1MB5 LINE L1 -9 6165 6071 1113 196 5 5 chr1 17597322 17597526 -264596138 + AluJb SINE Alu 1 204 -108 2294 86 0 20 chr1 17597612 17597915 -264595749 + AluY SINE Alu 1 297 -14 1980 138 6 6 chr1 17597921 17598233 -264595431 + AluSx SINE Alu 1 312 0 1808 147 0 0 chr1 17599314 17599587 -264594077 + AluSg SINE Alu 1 273 -37 211 143 0 24 chr1 17599592 17599634 -264594030 + (TAAAAA)n Simple_repeat Simple_repeat 2 42 0 385 276 21 14 chr1 17599784 17599929 -264593735 + MIR SINE MIR 96 241 -21 401 242 0 0 chr1 17600872 17600967 -264592697 - L1MB5 LINE L1 -9 6165 6071 1828 156 0 0 chr1 17604064 17604339 -264589325 - AluSx SINE Alu 0 312 38 16356 80 5 48 chr1 17605053 17606440 -264587224 - L1P LINE L1 -2920 3226 1991 5417 47 2 0 chr1 17606440 17607085 -264586579 + L1PA4 LINE L1 5494 6139 -16 16356 80 5 48 chr1 17607085 17608156 -264585508 - L1P LINE L1 -4155 1991 875 423 0 0 0 chr1 17610373 17610420 -264583244 + (TG)n Simple_repeat Simple_repeat 2 48 0 221 167 19 0 chr1 17611923 17611977 -264581687 + CT-rich Low_complexity Low_complexity 1 55 0 387 0 0 0 chr1 17613480 17613523 -264580141 + (TG)n Simple_repeat Simple_repeat 2 44 0 281 157 36 12 chr1 17614615 17614698 -264578966 + GA-rich Low_complexity Low_complexity 2 86 0 270 73 0 0 chr1 17615104 17615145 -264578519 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 221 167 19 0 chr1 17616640 17616694 -264576970 + CT-rich Low_complexity Low_complexity 1 55 0 351 0 0 0 chr1 17618195 17618234 -264575430 + (TG)n Simple_repeat Simple_repeat 2 40 0 281 157 36 12 chr1 17619326 17619409 -264574255 + GA-rich Low_complexity Low_complexity 2 86 0 270 73 0 0 chr1 17619815 17619856 -264573808 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 358 222 108 0 chr1 17621414 17621529 -264572135 + AluSp SINE Alu 127 206 -97 269 61 0 0 chr1 17621903 17621936 -264571728 - U1 snRNA snRNA 0 165 133 1652 193 130 71 chr1 17621936 17622474 -264571190 - LTR4 LTR ERV1 0 596 27 769 203 14 0 chr1 17623064 17623234 -264570430 - AluJb SINE Alu 0 311 140 1658 111 148 0 chr1 17623375 17623645 -264570019 - AluSg SINE Alu 0 310 1 2037 121 0 0 chr1 17623714 17624015 -264569649 + AluSg SINE Alu 1 301 0 24 32 0 0 chr1 17624050 17624081 -264569583 + AT_rich Low_complexity Low_complexity 1 31 0 2050 119 0 0 chr1 17624250 17624543 -264569121 + AluSx SINE Alu 3 295 -17 21 36 0 0 chr1 17624564 17624592 -264569072 + AT_rich Low_complexity Low_complexity 1 28 0 599 176 20 0 chr1 17624595 17624697 -264568967 - FRAM SINE Alu -33 143 40 573 189 0 0 chr1 17624702 17624808 -264568856 - FLAM_A SINE Alu -19 123 18 673 176 339 80 chr1 17624864 17625103 -264568561 - AluJo SINE Alu 0 302 2 21 36 0 0 chr1 17625103 17625131 -264568533 + AT_rich Low_complexity Low_complexity 1 28 0 303 28 0 0 chr1 17626187 17626223 -264567441 + (GA)n Simple_repeat Simple_repeat 1 36 0 1567 122 0 24 chr1 17626396 17626559 -264567105 - AluSx SINE Alu -14 298 141 363 44 0 0 chr1 17626559 17626604 -264567060 + (TTA)n Simple_repeat Simple_repeat 2 46 0 1567 122 0 24 chr1 17626604 17626686 -264566978 - AluSx SINE Alu -171 141 59 479 220 80 13 chr1 17627172 17627322 -264566342 - REP3 LTR ERV -401 161 2 303 181 139 0 chr1 17627323 17627395 -264566269 + MER45B DNA AcHobo 312 393 -647 1535 0 0 0 chr1 17627840 17628004 -264565660 - U1 snRNA snRNA -1 164 1 279 304 58 22 chr1 17628388 17628526 -264565138 - Charlie4 DNA MER1_type -4 1957 1815 3198 122 37 4 chr1 17629104 17629586 -264564078 + MER41E LTR ERV1 15 512 0 309 357 83 0 chr1 17629701 17629858 -264563806 + HAL1 LINE L1 527 696 -1811 2899 137 49 46 chr1 17629874 17630444 -264563220 - LTR8A LTR ERV1 0 727 156 1023 154 16 27 chr1 17630456 17630644 -264563020 - MER1B DNA MER1_type -2 337 152 2730 302 52 55 chr1 17631524 17632438 -264561226 - PRIMA41-int LTR ERV1 -2057 5699 4818 1943 110 52 0 chr1 17632438 17632729 -264560935 - AluSx SINE Alu -6 306 1 2730 302 52 55 chr1 17632729 17633475 -264560189 - PRIMA41-int LTR ERV1 -2938 4818 4072 1658 86 0 0 chr1 17633475 17633696 -264559968 - AluY SINE Alu -90 221 1 394 248 143 96 chr1 17633764 17633890 -264559774 + L1MEc LINE L1 1704 1823 -4573 1682 171 3 0 chr1 17633890 17634176 -264559488 + AluSx SINE Alu 1 287 -25 394 248 143 96 chr1 17634176 17634371 -264559293 + L1MEc LINE L1 1823 2040 -4356 477 177 105 57 chr1 17634588 17634712 -264558952 - FLAM_C SINE Alu -12 131 2 596 54 0 0 chr1 17634736 17634810 -264558854 - tRNA-Asn-AAC tRNA tRNA -3 74 1 1898 119 3 14 chr1 17635499 17635792 -264557872 + AluSx SINE Alu 1 290 -22 383 191 0 0 chr1 17635859 17635927 -264557737 + tRNA-His-CAC tRNA tRNA 6 73 -2 639 190 73 0 chr1 17636421 17636558 -264557106 - U1 snRNA snRNA -14 151 5 594 54 0 0 chr1 17637614 17637688 -264555976 - tRNA-Glu-GAG tRNA tRNA -1 74 1 375 287 30 24 chr1 17638181 17638345 -264555319 + L2 LINE L2 2351 2515 -799 322 206 51 120 chr1 17638426 17638601 -264555063 - MER20 DNA MER1_type -56 163 1 1173 178 33 21 chr1 17639484 17639725 -264553939 - MLT1A1 LTR MaLR 0 365 122 2517 102 8 0 chr1 17639902 17640254 -264553410 - THE1A LTR MaLR 0 355 1 547 282 147 38 chr1 17640339 17640836 -264552828 + L1M4 LINE L1 4697 5247 -899 1857 57 54 50 chr1 17642028 17642331 -264551333 + AluY SINE Alu 1 304 0 437 279 146 25 chr1 17642659 17642832 -264550832 + L1M4 LINE L1 4987 5198 -948 4654 188 19 14 chr1 17642832 17643747 -264549917 + MER49 LTR ERV1 5 923 0 437 279 146 25 chr1 17643747 17643813 -264549851 + L1M4 LINE L1 5198 5255 -891 8872 39 5 1 chr1 17643814 17645533 -264548131 + L1PA4 LINE L1 4293 6019 -136 372 22 0 0 chr1 17646230 17646275 -264547389 + (TG)n Simple_repeat Simple_repeat 2 46 0 248 157 24 36 chr1 17647367 17647450 -264546214 + GA-rich Low_complexity Low_complexity 2 83 0 261 0 0 0 chr1 17647856 17647885 -264545779 + (TCTCTG)n Simple_repeat Simple_repeat 2 30 0 230 352 11 34 chr1 17649056 17649232 -264544432 + L1MC4 LINE L1 7460 7631 -411 532 314 45 48 chr1 17649243 17649685 -264543979 - L1MC4 LINE L1 -413 7629 7189 261 0 0 0 chr1 17650052 17650081 -264543583 + (TG)n Simple_repeat Simple_repeat 1 29 0 255 203 68 0 chr1 17651312 17651386 -264542278 - MLT2D LTR ERVL -70 445 367 514 313 21 10 chr1 17651411 17651603 -264542061 - MLT2D LTR ERVL -220 194 1 1059 267 26 8 chr1 17651606 17651995 -264541669 - L1M4 LINE L1 -892 5254 4859 1460 147 8 26 chr1 17652298 17652564 -264541100 + AluSq SINE Alu 50 310 -3 413 251 201 46 chr1 17652564 17652847 -264540817 + L1MEc LINE L1 983 1309 -5254 415 291 73 49 chr1 17652925 17653334 -264540330 + L1MEc LINE L1 1265 1683 -4701 * 1110 254 98 39 chr1 17653326 17653400 -264540264 + L1M4 LINE L1 4190 4258 -1888 488 68 14 0 chr1 17653400 17653473 -264540191 + (CA)n Simple_repeat Simple_repeat 2 75 0 1110 254 98 39 chr1 17653473 17653884 -264539780 + L1M4 LINE L1 4258 4703 -1443 1116 221 11 7 chr1 17653960 17654236 -264539428 - AluJo SINE Alu -9 303 27 2196 79 0 26 chr1 17654394 17654697 -264538967 + AluY SINE Alu 1 295 -16 191 88 29 0 chr1 17654725 17654759 -264538905 + (TA)n Simple_repeat Simple_repeat 2 36 0 227 222 0 0 chr1 17654763 17654826 -264538838 - L1MA9 LINE L1 -36 6276 6214 331 290 156 11 chr1 17655688 17655874 -264537790 + MIR SINE MIR 34 246 -16 255 369 53 5 chr1 17655947 17656153 -264537511 - L1MC/D LINE L1 -2019 5789 5574 246 192 110 0 chr1 17656529 17656602 -264537062 - HAL1 LINE L1 -146 2361 2281 220 271 0 29 chr1 17658006 17658076 -264535588 + CT-rich Low_complexity Low_complexity 2 69 0 384 125 125 0 chr1 17658989 17659053 -264534611 - tRNA-Gln-CAG tRNA tRNA -3 72 1 2079 161 44 3 chr1 17659842 17660208 -264533456 - LOR1b LTR ERV1 -2 459 79 481 132 13 0 chr1 17660209 17660285 -264533379 + AluJb SINE Alu 57 133 -179 2772 206 32 34 chr1 17660302 17660918 -264532746 + L1P LINE L1 11 625 -5521 287 227 13 13 chr1 17660953 17661028 -264532636 - MER4B-int LTR ERV1 -918 5840 5766 801 206 12 0 chr1 17661046 17661211 -264532453 + AluJb SINE Alu 140 306 -6 2396 55 3 7 chr1 17661297 17661607 -264532057 + AluY SINE Alu 1 309 -2 268 284 52 26 chr1 17661886 17662002 -264531662 + Charlie4 DNA MER1_type 1839 1957 -4 2012 103 0 14 chr1 17662853 17663134 -264530530 + AluSg SINE Alu 1 277 -33 180 0 0 0 chr1 17663136 17663156 -264530508 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 435 258 108 38 chr1 17663819 17664005 -264529659 - MIR SINE MIR -14 248 50 598 260 180 10 chr1 17664280 17664480 -264529184 - MIR SINE MIR -26 236 3 261 0 0 0 chr1 17664672 17664701 -264528963 + (TTA)n Simple_repeat Simple_repeat 1 29 0 195 189 158 74 chr1 17665261 17665356 -264528308 + L2 LINE L2 3169 3271 -1 616 187 57 0 chr1 17665384 17665507 -264528157 - MER3 DNA MER1_type 0 209 80 244 275 76 46 chr1 17665889 17666020 -264527644 + L2 LINE L2 3123 3257 -15 931 148 7 0 chr1 17667272 17667444 -264526220 - AluJb SINE Alu 0 306 134 2288 69 0 23 chr1 17667444 17667749 -264525915 - AluY SINE Alu -13 298 1 554 222 6 99 chr1 17868560 17868722 -264324942 - AluJo SINE Alu -115 197 51 2272 241 144 24 chr1 17868733 17869505 -264324159 + L2 LINE L2 1979 2890 -423 2187 107 39 39 chr1 17869505 17869869 -264323795 + THE1B LTR MaLR 1 364 0 2272 241 144 24 chr1 17869869 17870059 -264323605 + L2 LINE L2 2890 3056 -257 263 259 0 0 chr1 17870095 17870153 -264323511 - L1MC3 LINE L1 -506 7279 7222 1853 139 23 116 chr1 17870156 17870426 -264323238 + MLT1B LTR MaLR 1 218 -172 2148 113 29 45 chr1 17870426 17870807 -264322857 + THE1C LTR MaLR 1 375 0 1853 139 23 116 chr1 17870807 17870966 -264322698 + MLT1B LTR MaLR 218 390 0 383 232 82 57 chr1 17871027 17871221 -264322443 + L2 LINE L2 3114 3312 -1 698 310 48 59 chr1 17871231 17871343 -264322321 + L1M4 LINE L1 2135 2247 -3899 2295 97 7 7 chr1 17871343 17871632 -264322032 + AluSx SINE Alu 1 289 -23 426 69 0 0 chr1 17871633 17871691 -264321973 + (TA)n Simple_repeat Simple_repeat 1 58 0 698 310 48 59 chr1 17871691 17871934 -264321730 + L1M4 LINE L1 2246 2488 -3658 8998 206 76 35 chr1 17871934 17875484 -264318180 + L1MDa LINE L1 189 3888 -2652 3162 98 2 22 chr1 17875518 17876006 -264317658 - L1PB1 LINE L1 0 6151 5674 2429 149 19 3 chr1 17876011 17876655 -264317009 + L1PB1 LINE L1 5005 5658 -493 509 254 39 22 chr1 17876651 17876832 -264316832 + L1MDa LINE L1 3877 4060 -2480 * 759 294 87 25 chr1 17876826 17877434 -264316230 + L1M4 LINE L1 2473 3118 -3028 430 202 48 24 chr1 17877439 17877563 -264316101 + L1M4 LINE L1 3154 3280 -2866 1646 170 46 20 chr1 17877911 17878319 -264315345 - L1M4 LINE L1 -608 5576 5165 2280 88 0 0 chr1 17878319 17878625 -264315039 - AluY SINE Alu 0 306 1 1646 170 46 20 chr1 17878625 17878678 -264314986 - L1M4 LINE L1 -1019 5165 5115 504 221 115 8 chr1 17878891 17879013 -264314651 + MER63A DNA MER1_type 50 184 -26 301 275 22 0 chr1 17879388 17879479 -264314185 - MIR SINE MIR -82 126 34 258 308 106 40 chr1 17879800 17880027 -264313637 + MIR SINE MIR 7 248 -14 2071 108 0 0 chr1 17880284 17880544 -264313120 + AluSq SINE Alu 1 260 -53 216 0 0 0 chr1 17880591 17880615 -264313049 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 421 287 0 0 chr1 17880762 17880877 -264312787 + MIR3 SINE MIR 86 200 -8 294 220 68 0 chr1 17881197 17881298 -264312366 + MIR SINE MIR 31 149 -59 604 251 82 11 chr1 17882939 17883122 -264310542 + MER91A DNA MER1_type 1 196 0 1932 161 0 13 chr1 17883361 17883677 -264309987 + AluJb SINE Alu 1 312 0 2444 217 11 4 chr1 17883831 17884351 -264309313 - L1ME3 LINE L1 -24 6138 5615 1979 155 53 0 chr1 17884352 17884694 -264308970 - THE1C LTR MaLR -1 374 15 1198 208 26 55 chr1 17884696 17884989 -264308675 - L1ME3 LINE L1 -541 5621 5340 2018 159 0 10 chr1 17884989 17885290 -264308374 - AluSx SINE Alu -13 299 2 1198 208 26 55 chr1 17885290 17885375 -264308289 - L1ME3 LINE L1 -822 5340 5254 190 336 50 57 chr1 17885426 17885566 -264308098 - L2 LINE L2 0 3272 3134 1358 137 11 95 chr1 17886667 17886814 -264306850 + LTR51 LTR ERV1 5 163 -508 1992 107 54 18 chr1 17886814 17887094 -264306570 + AluSx SINE Alu 1 290 -22 2335 93 0 7 chr1 17887102 17887404 -264306260 + AluY SINE Alu 1 300 -11 1358 137 11 95 chr1 17887404 17887531 -264306133 + LTR51 LTR ERV1 170 264 -407 245 107 0 54 chr1 17887534 17887769 -264305895 + (TTC)n Simple_repeat Simple_repeat 2 180 0 1991 154 6 6 chr1 17887769 17888081 -264305583 - AluJb SINE Alu 0 547 1 1763 191 21 67 chr1 17888082 17888516 -264305148 + LTR51 LTR ERV1 258 671 0 352 270 17 9 chr1 17889760 17889875 -264303789 + MIR SINE MIR 24 139 -69 265 284 0 12 chr1 17889901 17889982 -264303682 + MIR SINE MIR 85 164 -98 428 262 5 48 chr1 17890208 17890395 -264303269 + CT-rich Low_complexity Low_complexity 2 180 0 205 185 62 31 chr1 17890378 17890443 -264303221 + (TCTG)n Simple_repeat Simple_repeat 2 68 0 * 188 195 0 0 chr1 17891239 17891280 -264302384 + MIR SINE MIR 81 121 -87 597 328 39 19 chr1 17891946 17892202 -264301462 + MIR SINE MIR 2 262 0 200 269 0 0 chr1 17892349 17892401 -264301263 + L2 LINE L2 3262 3313 0 406 300 95 24 chr1 17893719 17893798 -264299866 - MIR SINE MIR -10 252 180 2098 140 0 0 chr1 17893798 17894108 -264299556 + AluSx SINE Alu 1 310 0 406 300 95 24 chr1 17894108 17894236 -264299428 - MIR SINE MIR -82 180 28 195 265 159 62 chr1 17894249 17894607 -264299057 - L2 LINE L2 -558 2756 2364 232 286 18 0 chr1 17895110 17895166 -264298498 + L2 LINE L2 3256 3312 -1 * 413 297 39 13 chr1 17895163 17895318 -264298346 + MIR3 SINE MIR 43 201 -7 1112 215 31 78 chr1 17896004 17896294 -264297370 - PABL_B LTR ERV1 0 667 365 1877 177 3 0 chr1 17896294 17896593 -264297071 - AluSx SINE Alu -11 301 2 1112 215 31 78 chr1 17896593 17896783 -264296881 - PABL_B LTR ERV1 -302 365 53 678 262 126 15 chr1 17897064 17897335 -264296329 + L2 LINE L2 3004 3304 -9 350 313 27 0 chr1 17897959 17898071 -264295593 + MIR SINE MIR 33 147 -115 261 292 28 0 chr1 17898082 17898154 -264295510 + CT-rich Low_complexity Low_complexity 1 74 0 539 207 0 0 chr1 17898162 17898278 -264295386 - AluSg/x SINE Alu -12 298 183 1798 115 0 8 chr1 17898378 17898621 -264295043 - AluY SINE Alu -70 241 1 1946 108 4 22 chr1 17898940 17899112 -264294552 - AluSx SINE Alu -9 303 136 2357 93 0 3 chr1 17899112 17899403 -264294261 - AluSc SINE Alu -19 290 1 1946 108 4 22 chr1 17899403 17899507 -264294157 - AluSx SINE Alu -176 136 32 364 247 164 41 chr1 17899513 17899659 -264294005 + MER5B DNA MER1_type 15 178 0 509 315 28 0 chr1 17899683 17899864 -264293800 + MIR SINE MIR 45 230 -32 454 275 18 54 chr1 17900356 17900523 -264293141 - MIR SINE MIR 0 262 102 1461 209 63 50 chr1 17901043 17901441 -264292223 + MLT1D LTR MaLR 1 403 -102 * 2212 151 41 44 chr1 17901437 17901721 -264291943 + LTR32 LTR ERVL 10 294 -177 2335 95 0 0 chr1 17901721 17902015 -264291649 - AluSg SINE Alu -16 294 1 2212 151 41 44 chr1 17902015 17902166 -264291498 + LTR32 LTR ERVL 294 444 -27 1108 154 0 0 chr1 17902168 17902324 -264291340 - FRAM SINE Alu -22 154 1 642 176 0 8 chr1 17902342 17902461 -264291203 + MLT1D LTR MaLR 388 505 0 227 337 0 0 chr1 17905289 17905372 -264288292 + GA-rich Low_complexity Low_complexity 1 83 0 458 235 112 18 chr1 17905735 17905905 -264287759 + MER5A DNA MER1_type 1 186 -3 2379 91 3 25 chr1 17905905 17906224 -264287440 + AluSx SINE Alu 1 312 0 212 245 19 0 chr1 17906248 17906301 -264287363 + L2 LINE L2 3005 3058 -214 679 224 45 30 chr1 17907894 17908095 -264285569 - MIR SINE MIR -13 249 46 281 317 41 3 chr1 17908190 17908395 -264285269 + MIR SINE MIR 38 252 -10 1935 159 24 3 chr1 17909131 17909426 -264284238 + AluJb SINE Alu 1 301 -11 2197 262 128 22 chr1 17909431 17910164 -264283500 - MER45C DNA AcHobo -678 903 75 2548 60 3 3 chr1 17910164 17910466 -264283198 + AluSp SINE Alu 1 302 -11 2197 262 128 22 chr1 17910466 17910542 -264283122 - MER45C DNA AcHobo -1506 75 8 2307 113 0 6 chr1 17911295 17911606 -264282058 - AluSx SINE Alu -3 309 1 2474 78 3 3 chr1 17912191 17912498 -264281166 - AluY SINE Alu 0 311 5 391 229 229 0 chr1 17912553 17912675 -264280989 + MIR3 SINE MIR 37 186 -22 436 261 121 24 chr1 17913718 17913883 -264279781 - MIR SINE MIR -80 182 2 992 138 32 27 chr1 17913896 17914084 -264279580 + MER53 DNA DNA 1 189 0 473 278 15 0 chr1 17914720 17914853 -264278811 - MIR SINE MIR -36 226 92 1907 126 39 3 chr1 17914855 17915141 -264278523 + AluJo SINE Alu 3 298 -14 27 0 0 0 chr1 17915144 17915171 -264278493 + AT_rich Low_complexity Low_complexity 1 27 0 256 255 10 59 chr1 17915171 17915273 -264278391 - MIR SINE MIR -150 112 16 216 298 19 58 chr1 17915636 17915740 -264277924 + L2 LINE L2 3000 3099 -173 1206 145 77 14 chr1 17915793 17916000 -264277664 - AluJb SINE Alu -6 306 87 348 239 14 6 chr1 17916050 17916185 -264277479 - MER20 DNA MER1_type 0 219 1 215 217 98 43 chr1 17916197 17916289 -264277375 + L2 LINE L2 3168 3264 -8 189 190 0 103 chr1 17916792 17916850 -264276814 + MIR SINE MIR 19 70 -138 1340 170 0 18 chr1 17916983 17917212 -264276452 - AluJb SINE Alu -9 303 79 1875 150 3 6 chr1 17917739 17918052 -264275612 + AluSx SINE Alu 1 312 0 228 234 0 62 chr1 17918118 17918182 -264275482 - L2 LINE L2 0 3313 3254 305 335 76 0 chr1 17918212 17918397 -264275267 + L1MC4a LINE L1 5705 5903 -1905 1831 144 3 7 chr1 17918474 17918772 -264274892 + AluJb SINE Alu 1 297 -15 779 141 127 1 chr1 17918774 17918933 -264274731 + L1MB5 LINE L1 5821 5979 -195 1802 102 72 8 chr1 17919183 17919496 -264274168 - AluJb SINE Alu 0 330 1 564 128 0 0 chr1 17919498 17919584 -264274080 - AluS SINE Alu -2 308 223 1689 124 39 16 chr1 17919584 17919714 -264273950 - AluSx SINE Alu -49 263 138 1831 107 68 7 chr1 17919714 17919994 -264273670 - AluY SINE Alu -14 297 1 1689 124 39 16 chr1 17919994 17920120 -264273544 - AluSx SINE Alu -174 138 1 248 338 75 23 chr1 17920296 17920429 -264273235 + MIR SINE MIR 4 143 -119 244 239 0 0 chr1 17921133 17921179 -264272485 - MER91 DNA MER1_type -149 47 2 342 303 264 0 chr1 17921617 17921772 -264271892 - MER91A DNA MER1_type 0 196 1 191 341 12 0 chr1 17922076 17922158 -264271506 - MIR SINE MIR -115 147 65 207 349 0 0 chr1 17923465 17923528 -264270136 + MIR SINE MIR 90 152 -110 205 300 50 0 chr1 17923676 17923756 -264269908 - MIR SINE MIR -173 89 6 1051 244 123 27 chr1 17924722 17925271 -264268393 + L2 LINE L2 2528 3115 -198 846 116 0 0 chr1 17925273 17925394 -264268270 - AluSg/x SINE Alu -9 301 181 694 183 7 44 chr1 17925412 17925549 -264268115 + L2 LINE L2 3182 3313 0 548 179 11 0 chr1 17926188 17926283 -264267381 + L2 LINE L2 3215 3310 -3 1367 300 220 24 chr1 17926612 17928351 -264265313 + L2 LINE L2 28 2107 -1207 2928 194 75 90 chr1 17928363 17929270 -264264394 + MER63C DNA MER1_type 3 895 -35 1751 197 35 24 chr1 17929270 17929641 -264264023 + ERVL LTR ERVL 1847 2221 -3543 318 108 40 27 chr1 17929683 17929757 -264263907 + C-rich Low_complexity Low_complexity 3 77 0 2235 104 3 0 chr1 17929867 17930175 -264263489 - AluSx SINE Alu -3 309 1 819 259 106 53 chr1 17930175 17930573 -264263091 + L2 LINE L2 2320 2738 -576 189 357 0 0 chr1 17930953 17931023 -264262641 + L2 LINE L2 3185 3254 -18 254 362 9 0 chr1 17931030 17931135 -264262529 - MIR SINE MIR -129 133 28 360 0 0 0 chr1 17931345 17931385 -264262279 + (ATG)n Simple_repeat Simple_repeat 3 42 0 180 262 0 0 chr1 17932440 17932482 -264261182 + L2 LINE L2 3002 3043 -229 241 283 87 11 chr1 17932521 17932613 -264261051 + MIR SINE MIR 99 197 -65 229 326 22 0 chr1 17933041 17933130 -264260534 - MIR SINE MIR -3 259 169 2030 156 43 54 chr1 17933175 17933598 -264260066 - MER83 LTR ERV1 -27 421 4 297 189 68 27 chr1 17933600 17933674 -264259990 - MIR SINE MIR -112 150 74 321 319 49 14 chr1 17934039 17934183 -264259481 - L3 LINE CR1 -101 1476 1328 208 392 59 0 chr1 17934761 17934863 -264258801 - L2 LINE L2 -10 3262 3155 267 280 131 54 chr1 17934878 17935046 -264258618 - MIR SINE MIR -56 206 26 812 248 39 5 chr1 17935115 17935321 -264258343 + MIR SINE MIR 10 222 -40 1568 104 207 4 chr1 17935325 17935576 -264258088 + AluSx SINE Alu 1 302 0 975 158 6 12 chr1 17936452 17936644 -264257020 + AluJo SINE Alu 122 312 0 1766 144 50 13 chr1 17936650 17936948 -264256716 + AluSx SINE Alu 1 309 -3 258 184 42 0 chr1 17937005 17937078 -264256586 - MIR SINE MIR -78 130 54 264 214 51 41 chr1 17939371 17939469 -264254195 - MIR SINE MIR -52 210 112 402 196 82 0 chr1 17939588 17939685 -264253979 - MIR SINE MIR -72 136 32 721 139 88 119 chr1 17939836 17939883 -264253781 - MER53 DNA DNA -1 188 141 2115 111 20 0 chr1 17939883 17940189 -264253475 + AluSx SINE Alu 1 312 0 721 139 88 119 chr1 17940189 17940335 -264253329 - MER53 DNA DNA -48 141 1 287 274 0 53 chr1 17940739 17940834 -264252830 - MIR3 SINE MIR -5 203 114 245 227 0 13 chr1 17940920 17940995 -264252669 + (CAT)n Simple_repeat Simple_repeat 3 76 0 531 279 56 17 chr1 17942057 17942236 -264251428 + MIR SINE MIR 63 248 -14 217 272 247 10 chr1 17942247 17942348 -264251316 - MIR SINE MIR -62 146 37 538 320 0 22 chr1 17942574 17942755 -264250909 - L2 LINE L2 0 3313 3137 1056 276 35 0 chr1 17942760 17943079 -264250585 - L2 LINE L2 -688 2626 2297 222 37 0 0 chr1 17943273 17943300 -264250364 + (GA)n Simple_repeat Simple_repeat 2 28 0 531 132 0 0 chr1 17943740 17943831 -264249833 + (TGGA)n Simple_repeat Simple_repeat 4 94 0 315 146 0 0 chr1 17943893 17943948 -264249716 + (ATG)n Simple_repeat Simple_repeat 1 55 0 335 281 42 0 chr1 17943950 17944046 -264249618 - MIR SINE MIR -10 252 153 2146 115 3 0 chr1 17944165 17944461 -264249203 + AluSg SINE Alu 1 297 -13 2107 125 0 0 chr1 17944541 17944846 -264248818 + AluY SINE Alu 1 305 -6 409 286 226 18 chr1 17944896 17945113 -264248551 + L1MC5 LINE L1 7651 7912 -49 186 308 51 43 chr1 17945770 17945887 -264247777 + MIR SINE MIR 16 133 -75 271 233 233 0 chr1 17946123 17946239 -264247425 + MIR SINE MIR 112 254 -8 210 257 194 7 chr1 17946928 17947072 -264246592 + L2 LINE L2 2921 3091 -181 1104 222 68 0 chr1 17947150 17947357 -264246307 + MER58A DNA MER1_type 4 224 0 195 241 0 56 chr1 17947874 17947928 -264245736 + L2 LINE L2 3010 3060 -212 234 310 0 14 chr1 17948039 17948110 -264245554 + MIR SINE MIR 23 92 -170 1903 134 20 17 chr1 17948320 17948619 -264245045 - AluJb SINE Alu -12 300 1 304 311 41 0 chr1 17948658 17948780 -264244884 + L1ME3A LINE L1 5836 5962 -208 264 245 11 64 chr1 17948835 17948929 -264244735 + L1ME3A LINE L1 5969 6057 -113 234 0 0 0 chr1 17948984 17949010 -264244654 + (TG)n Simple_repeat Simple_repeat 2 27 0 569 295 128 16 chr1 17949117 17949368 -264244296 + L1MC/D LINE L1 5388 5666 -2142 816 252 80 37 chr1 17949466 17950128 -264243536 - L1M4 LINE L1 -748 5398 4766 2045 108 4 0 chr1 17950128 17950405 -264243259 + AluSp SINE Alu 1 278 -35 207 0 0 0 chr1 17950408 17950431 -264243233 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 816 252 80 37 chr1 17950431 17950472 -264243192 - L1M4 LINE L1 -1381 4765 4578 * 1169 223 16 44 chr1 17950469 17950833 -264242831 - L1MCa LINE L1 -5182 1244 891 454 318 47 7 chr1 17951403 17951551 -264242113 + MIR3 SINE MIR 40 193 -15 462 260 90 67 chr1 17951559 17951782 -264241882 + MIR SINE MIR 35 262 0 811 276 29 34 chr1 17951817 17952056 -264241608 + MIR SINE MIR 15 252 -10 249 309 49 12 chr1 17952553 17952634 -264241030 + MIR SINE MIR 62 145 -63 417 251 131 50 chr1 17952695 17952894 -264240770 + MIR SINE MIR 34 248 -14 217 200 60 0 chr1 17953182 17953232 -264240432 - MIR3 SINE MIR -41 167 115 513 235 38 49 chr1 17953310 17953493 -264240171 - MIR SINE MIR -80 182 2 187 345 0 0 chr1 17953820 17953878 -264239786 + L2 LINE L2 3007 3064 -208 1939 98 0 88 chr1 17953943 17954271 -264239393 + AluSx SINE Alu 1 299 -13 335 301 179 0 chr1 17954571 17954767 -264238897 - MIR SINE MIR -18 244 14 642 199 243 24 chr1 17955155 17955361 -264238303 - MIR SINE MIR 0 262 12 408 281 72 0 chr1 17955432 17955571 -264238093 - MIR SINE MIR -37 225 77 923 191 38 6 chr1 17955807 17955990 -264237674 + MER53 DNA DNA 1 189 0 213 324 0 0 chr1 17956079 17956190 -264237474 + GA-rich Low_complexity Low_complexity 2 112 0 2201 99 16 0 chr1 17956282 17956586 -264237078 - AluSx SINE Alu -3 309 1 191 172 109 47 chr1 17956761 17956825 -264236839 - L2 LINE L2 -35 3237 3170 349 328 21 52 chr1 17956931 17957123 -264236541 + MIR SINE MIR 33 218 -44 451 314 21 0 chr1 17957396 17957536 -264236128 + MIR SINE MIR 7 149 -113 282 93 93 0 chr1 17957592 17957646 -264236018 - MIR SINE MIR -61 147 89 423 261 27 0 chr1 17958057 17958168 -264235496 + MER81 DNA DNA 1 114 0 185 297 176 0 chr1 17958211 17958285 -264235379 + MER5A DNA MER1_type 101 187 -2 2261 77 7 0 chr1 17958325 17958623 -264235041 + AluSp SINE Alu 1 300 -13 556 217 26 0 chr1 17958765 17958880 -264234784 - MIR SINE MIR -111 151 34 407 295 16 0 chr1 17959437 17959559 -264234105 - MIR3 SINE MIR -49 159 36 535 291 41 6 chr1 17959617 17959789 -264233875 + MER5B DNA MER1_type 1 178 0 535 250 9 0 chr1 17960494 17960606 -264233058 + MIR SINE MIR 37 149 -59 1808 145 0 3 chr1 17960888 17961170 -264232494 + AluJb SINE Alu 1 281 -31 221 277 60 12 chr1 17961589 17961672 -264231992 + L2 LINE L2 2988 3074 -198 781 240 68 18 chr1 17961901 17962122 -264231542 + MIR SINE MIR 31 262 0 447 241 9 0 chr1 17962113 17962221 -264231443 - MIR SINE MIR -103 159 51 * 364 348 30 7 chr1 17962279 17962414 -264231250 - L3 LINE CR1 -6 1571 1434 930 178 69 25 chr1 17963144 17963346 -264230318 + MER20 DNA MER1_type 6 216 -3 828 200 19 117 chr1 17963665 17963930 -264229734 + MIR SINE MIR 3 241 -21 206 262 85 106 chr1 17964858 17964943 -264228721 + MER5A DNA MER1_type 50 132 -57 2479 68 6 0 chr1 17964943 17965254 -264228410 - AluSp SINE Alu 0 313 1 206 262 85 106 chr1 17965254 17965309 -264228355 + MER5A DNA MER1_type 132 187 -2 412 229 33 66 chr1 17965325 17965396 -264228268 + MIR SINE MIR 26 93 -169 2418 73 0 0 chr1 17965396 17965698 -264227966 - AluY SINE Alu -9 302 1 412 229 33 66 chr1 17965698 17965748 -264227916 + MIR SINE MIR 93 143 -119 368 291 15 37 chr1 17965973 17966107 -264227557 + MIR SINE MIR 20 150 -112 1852 158 0 11 chr1 17966858 17967176 -264226488 + AluJo SINE Alu 1 315 0 454 243 29 73 chr1 17969929 17970065 -264223599 - MER91B DNA MER1_type -60 130 1 284 365 56 9 chr1 17970137 17970244 -264223420 - MIR SINE MIR -135 127 16 530 289 18 18 chr1 17970817 17970983 -264222681 + MIR3 SINE MIR 36 201 -7 837 218 96 5 chr1 17971142 17971330 -264222334 - MER3 DNA MER1_type -4 205 1 868 199 147 11 chr1 17971340 17971531 -264222133 + MER20 DNA MER1_type 3 219 0 224 133 0 158 chr1 17971724 17971920 -264221744 + (CATTC)n Simple_repeat Simple_repeat 2 166 0 488 190 219 0 chr1 17972417 17972554 -264221110 - MER20 DNA MER1_type -52 167 1 578 323 124 9 chr1 17972872 17973098 -264220566 - MIR SINE MIR -10 252 1 225 374 43 17 chr1 17973453 17973568 -264220096 + L2 LINE L2 3092 3209 -63 515 286 104 0 chr1 17974004 17974196 -264219468 - MIR SINE MIR -4 258 47 371 246 1 0 chr1 17974390 17974481 -264219183 + MIR SINE MIR 59 149 -68 322 353 16 27 chr1 17974934 17975121 -264218543 + L2 LINE L2 2839 3023 -249 2079 93 29 4 chr1 17975121 17975425 -264218239 + AluSx SINE Alu 1 311 0 846 224 82 18 chr1 17975562 17975781 -264217883 + MIR SINE MIR 30 262 0 250 348 62 9 chr1 17976328 17976440 -264217224 - MIR SINE MIR -18 244 127 446 292 41 0 chr1 17976454 17976625 -264217039 + L2 LINE L2 2828 3005 -308 1650 173 26 26 chr1 17976625 17976990 -264216674 - AluJb SINE Alu 0 365 1 574 248 110 0 chr1 17977048 17977193 -264216471 - MIR SINE MIR -7 255 95 195 322 103 0 chr1 17977384 17977471 -264216193 + MIR SINE MIR 42 137 -71 217 330 0 19 chr1 17977789 17977895 -264215769 + SUBTEL_sa Satellite Satellite 5 108 -66 222 37 0 0 chr1 17978154 17978181 -264215483 + (TTCC)n Simple_repeat Simple_repeat 1 27 0 385 165 0 18 chr1 17978295 17978404 -264215260 + CT-rich Low_complexity Low_complexity 1 107 0 1731 167 0 0 chr1 17978405 17978681 -264214983 - AluSx SINE Alu 0 312 37 313 311 89 37 chr1 17978763 17978898 -264214766 + L2 LINE L2 3172 3313 0 564 294 6 19 chr1 17978910 17979070 -264214594 + MIR SINE MIR 95 252 -10 246 284 15 0 chr1 17979197 17979264 -264214400 - MIR SINE MIR -103 159 92 331 143 156 0 chr1 17979275 17979352 -264214312 + L2 LINE L2 3225 3313 0 236 157 0 171 chr1 17979322 17979392 -264214272 - L2 LINE L2 -7 3306 3249 * 392 318 0 19 chr1 17979375 17979482 -264214182 - MIR SINE MIR -138 124 20 291 241 0 35 chr1 17980257 17980344 -264213320 - Charlie8 DNA MER1_type -2257 160 77 570 252 12 60 chr1 17980899 17981149 -264212515 + L1M4 LINE L1 2790 3027 -3119 884 179 6 0 chr1 17981151 17981307 -264212357 + FRAM SINE Alu 1 156 -20 2139 95 0 29 chr1 17981310 17981616 -264212048 + AluSg SINE Alu 1 297 -13 653 155 57 17 chr1 17981644 17981911 -264211753 + L1PA5 LINE L1 3001 6152 -3 765 317 17 4 chr1 17982163 17982393 -264211271 + MIR SINE MIR 3 235 -27 259 186 0 0 chr1 17982435 17982478 -264211186 + L2 LINE L2 3257 3299 -14 360 286 86 64 chr1 17983545 17983765 -264209899 - L2 LINE L2 -38 3234 3010 200 194 0 0 chr1 17984315 17984351 -264209313 + (CAGGG)n Simple_repeat Simple_repeat 1 36 0 463 309 67 11 chr1 17985012 17985190 -264208474 + MIR SINE MIR 31 218 -44 320 188 174 0 chr1 17985190 17985259 -264208405 + L1M4 LINE L1 5726 5806 -368 1794 177 7 0 chr1 17985395 17985694 -264207970 - AluJb SINE Alu -11 301 1 359 286 30 126 chr1 17985703 17985934 -264207730 - L1ME LINE L1 -374 5788 5580 697 253 38 105 chr1 17985963 17986355 -264207309 - MLT1J1 LTR MaLR -18 428 63 792 284 27 18 chr1 17987014 17987236 -264206428 + MIR SINE MIR 5 228 -34 2116 114 0 3 chr1 17987437 17987736 -264205928 + AluSc SINE Alu 3 300 -9 268 192 131 30 chr1 18037891 18037990 -264155674 + MLT1K LTR MaLR 458 566 -22 2206 149 25 27 chr1 18038012 18038164 -264155500 + MSTA LTR MaLR 27 178 -250 2378 117 0 0 chr1 18038164 18038473 -264155191 - AluSc SINE Alu 0 309 1 2206 149 25 27 chr1 18038473 18038723 -264154941 + MSTA LTR MaLR 178 428 0 2198 105 72 43 chr1 18038807 18039315 -264154349 - MER51A LTR ERV1 0 634 1 428 274 29 49 chr1 18039335 18039539 -264154125 + LTR4 LTR ERV1 1 200 -396 917 239 18 21 chr1 18039728 18040008 -264153656 + LTR4 LTR ERV1 318 596 0 244 333 76 9 chr1 18040504 18040609 -264153055 + MIR SINE MIR 2 113 -149 1713 191 60 30 chr1 18040609 18041039 -264152625 + MLT1D LTR MaLR 1 443 -62 934 209 120 76 chr1 18041044 18041477 -264152187 - LTR56 LTR ERV1 0 445 11 1684 147 18 42 chr1 18041477 18041763 -264151901 + AluJo SINE Alu 1 279 -33 2457 127 91 8 chr1 18041763 18042157 -264151507 - MSTA LTR MaLR -1 427 1 7829 160 124 2 chr1 18042162 18043626 -264150038 - MLT1J1-int LTR MaLR -6 1635 5 1398 176 111 67 chr1 18043626 18044057 -264149607 + LTR7 LTR ERV1 1 450 0 2866 106 7 58 chr1 18044066 18044517 -264149147 - MSTA LTR MaLR 0 428 1 2259 108 0 22 chr1 18044566 18044880 -264148784 + AluY SINE Alu 1 307 -4 282 179 45 0 chr1 18044893 18044960 -264148704 + MLT1D LTR MaLR 436 505 0 609 63 13 0 chr1 18045189 18045268 -264148396 + MADE1 DNA Mariner 1 80 0 216 312 39 0 chr1 18045477 18045554 -264148110 + MIR SINE MIR 67 146 -116 280 252 58 24 chr1 18045666 18045776 -264147888 - MIR SINE MIR -75 133 25 268 264 27 55 chr1 18046199 18046309 -264147355 - MIR3 SINE MIR -24 184 78 186 203 153 17 chr1 18046402 18046461 -264147203 + L2 LINE L2 3206 3272 0 562 232 119 30 chr1 18046717 18046885 -264146779 - MIR SINE MIR -38 224 42 351 0 0 0 chr1 18046891 18046930 -264146734 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 254 286 78 13 chr1 18047256 18047333 -264146331 - L2 LINE L2 -4 3309 3228 243 311 0 0 chr1 18047440 18047514 -264146150 - MER117 DNA MER1_type -38 159 86 1517 165 4 0 chr1 18047528 18047764 -264145900 + AluJo SINE Alu 57 293 -19 532 273 68 117 chr1 18048230 18048615 -264145049 + L2 LINE L2 2897 3262 -10 2181 94 38 0 chr1 18049010 18049298 -264144366 + AluSc SINE Alu 11 309 0 1054 291 93 29 chr1 18049436 18050314 -264143350 - L2 LINE L2 -8 3305 2366 596 237 16 79 chr1 18050379 18050532 -264143132 - MER20 DNA MER1_type 0 219 58 189 0 0 0 chr1 18050532 18050553 -264143111 + (CA)n Simple_repeat Simple_repeat 2 22 0 * 267 31 0 0 chr1 18050552 18050584 -264143080 + (GA)n Simple_repeat Simple_repeat 2 33 0 596 237 16 79 chr1 18050553 18050652 -264143012 - MER20 DNA MER1_type -161 58 1 544 220 34 0 chr1 18050652 18050770 -264142894 - MIR SINE MIR -55 207 86 354 300 33 67 chr1 18050763 18050817 -264142847 - L2 LINE L2 -946 2368 2314 * 1380 204 126 30 chr1 18050817 18051150 -264142514 + MLT1A1 LTR MaLR 1 365 0 354 300 33 67 chr1 18051150 18051305 -264142359 - L2 LINE L2 -1000 2314 2166 * 1237 246 145 0 chr1 18051302 18051729 -264141935 + L2 LINE L2 1564 2052 -1262 521 273 30 45 chr1 18051777 18052044 -264141620 + L1ME LINE L1 5344 5606 -515 452 126 25 118 chr1 18052075 18052194 -264141470 - L1MC4 LINE L1 -1 8041 7934 219 114 0 0 chr1 18052199 18052234 -264141430 + (TC)n Simple_repeat Simple_repeat 2 36 0 246 268 0 0 chr1 18052241 18052297 -264141367 + (TA)n Simple_repeat Simple_repeat 2 57 0 253 314 0 0 chr1 18052299 18052385 -264141279 + L1MC4 LINE L1 6616 6701 -1341 1480 205 87 5 chr1 18052397 18052787 -264140877 - L1MC4 LINE L1 -110 7932 7511 314 371 8 0 chr1 18052794 18052926 -264140738 + L2 LINE L2 2918 3050 -263 1733 195 48 75 chr1 18053024 18053422 -264140242 + Cheshire DNA MER1_type 66 473 -1947 2306 141 2 80 chr1 18053422 18053634 -264140030 - L1MB3 LINE L1 -10 6173 5946 1521 174 210 14 chr1 18053634 18054048 -264139616 - LTR54B LTR ERV1 -2 496 2 2306 141 2 80 chr1 18054048 18054202 -264139462 - L1MB3 LINE L1 -237 5946 5848 1906 123 0 18 chr1 18054202 18054479 -264139185 - AluSx SINE Alu -10 302 31 2306 141 2 80 chr1 18054479 18054572 -264139092 - L1MB3 LINE L1 -335 5848 5749 1733 195 48 75 chr1 18054572 18054695 -264138969 + Cheshire DNA MER1_type 473 573 -1847 309 222 0 0 chr1 18054693 18054756 -264138908 + Cheshire DNA MER1_type 2355 2417 -3 * 2795 114 2 66 chr1 18054977 18055434 -264138230 + MSTC LTR MaLR 1 428 0 2130 137 0 13 chr1 18055688 18056036 -264137628 - AluSx SINE Alu 0 312 1 180 247 34 124 chr1 18056197 18056286 -264137378 - L3 LINE CR1 -2 1575 1495 469 329 12 0 chr1 18056680 18056841 -264136823 + MIR SINE MIR 95 257 -5 299 222 0 16 chr1 18057217 18057280 -264136384 - MIR SINE MIR -3 259 198 663 203 26 59 chr1 18057303 18057440 -264136224 + MIR SINE MIR 7 140 -122 1449 277 102 24 chr1 18057440 18057942 -264135722 - MER34 LTR ERV1 -1 541 1 663 203 26 59 chr1 18057942 18057957 -264135707 + MIR SINE MIR 140 154 -108 263 258 15 0 chr1 18057957 18058023 -264135641 + MER116 DNA Mariner 1 67 -13 320 266 0 0 chr1 18058037 18058116 -264135548 + MIR SINE MIR 168 246 -16 442 252 0 10 chr1 18058147 18058250 -264135414 - MIR SINE MIR -113 149 48 2273 109 0 7 chr1 18058254 18058558 -264135106 + AluSx SINE Alu 1 302 -10 181 276 26 53 chr1 18059214 18059290 -264134374 + MIR SINE MIR 8 81 -181 363 262 19 0 chr1 18059301 18059408 -264134256 + MER34 LTR ERV1 19 127 -415 239 232 36 0 chr1 18059416 18059472 -264134192 + Tigger5 DNA MER2_type 1 58 -2265 362 167 14 0 chr1 18059482 18059554 -264134110 - Tigger5 DNA MER2_type -6 2317 2245 456 224 82 66 chr1 18059680 18059956 -264133708 + MER34C LTR ERV1 290 525 -17 384 149 0 40 chr1 18060011 18060085 -264133579 + MER34 LTR ERV1 19 89 -453 262 311 16 0 chr1 18060227 18060349 -264133315 + (TG)n Simple_repeat Simple_repeat 1 124 0 208 272 0 27 chr1 18060380 18060564 -264133100 + (TG)n Simple_repeat Simple_repeat 2 180 0 472 280 5 53 chr1 18060609 18060798 -264132866 + (TG)n Simple_repeat Simple_repeat 1 180 0 1064 213 132 67 chr1 18060958 18061311 -264132353 + LTR56 LTR ERV1 1 387 -58 2457 76 0 10 chr1 18061311 18061614 -264132050 + AluY SINE Alu 1 300 -11 1064 213 132 67 chr1 18061614 18061678 -264131986 + LTR56 LTR ERV1 387 445 0 411 135 54 0 chr1 18061619 18061693 -264131971 + LTR23 LTR ERV1 353 430 -7 360 340 85 0 chr1 18062356 18062497 -264131167 - L2 LINE L2 -2 3270 3118 550 219 185 0 chr1 18062509 18062655 -264131009 - MER53 DNA DNA -1 188 16 998 117 25 31 chr1 18062848 18063011 -264130653 - FRAM SINE Alu -5 171 10 932 197 77 12 chr1 18063198 18063470 -264130194 - MSTB LTR MaLR -116 312 1 3543 145 37 30 chr1 18063470 18063737 -264129927 - MSTB-int LTR MaLR 0 1651 1387 2029 79 0 25 chr1 18063737 18064014 -264129650 + AluSp SINE Alu 35 304 -9 3543 145 37 30 chr1 18064014 18064401 -264129263 - MSTB-int LTR MaLR -264 1387 993 2360 93 0 0 chr1 18064407 18064717 -264128947 - AluSx SINE Alu -2 310 1 636 184 37 0 chr1 18064780 18064889 -264128775 + MSTB1 LTR MaLR 320 432 0 1505 98 17 51 chr1 18065321 18065556 -264128108 - MER30 DNA MER1_type -1 229 3 2169 111 0 0 chr1 18065610 18065907 -264127757 + AluSx SINE Alu 1 297 -15 975 249 45 110 chr1 18066148 18066199 -264127465 - LTR24B LTR ERV1 -7 569 516 1861 135 27 3 chr1 18066199 18066496 -264127168 + AluJo SINE Alu 1 304 -8 975 249 45 110 chr1 18066496 18066954 -264126710 - LTR24B LTR ERV1 -60 516 93 29 0 0 0 chr1 18067089 18067118 -264126546 + AT_rich Low_complexity Low_complexity 1 29 0 2302 91 0 0 chr1 18067119 18067416 -264126248 - AluSx SINE Alu -15 297 1 1472 172 0 39 chr1 18067468 18067737 -264125927 - L1MB2 LINE L1 -2 6169 5910 1013 96 0 15 chr1 18067737 18067872 -264125792 + FLAM_C SINE Alu 1 133 0 1472 172 0 39 chr1 18067872 18067887 -264125777 - L1MB2 LINE L1 -261 5910 5896 1916 128 3 26 chr1 18067986 18068292 -264125372 - AluJb SINE Alu -13 299 1 2313 57 20 10 chr1 18068297 18068595 -264125069 - AluY SINE Alu -10 301 1 534 266 70 13 chr1 18068596 18068754 -264124910 - MIR SINE MIR -65 197 31 422 178 11 0 chr1 18068854 18068944 -264124720 + (TG)n Simple_repeat Simple_repeat 1 91 0 255 264 0 14 chr1 18069140 18069212 -264124452 + MIR SINE MIR 66 136 -72 2286 109 0 0 chr1 18069673 18069985 -264123679 + AluSx SINE Alu 1 312 0 396 203 88 92 chr1 18070009 18070105 -264123559 - MER33 DNA MER1_type -2283 302 207 1620 176 0 13 chr1 18070105 18070411 -264123253 - AluJo SINE Alu -10 302 1 396 203 88 92 chr1 18070411 18070531 -264123133 - MER33 DNA MER1_type -2378 207 87 2439 118 52 0 chr1 18070531 18070982 -264122682 + MER1A DNA MER1_type 1 529 0 260 221 195 0 chr1 18070982 18071057 -264122607 - MER33 DNA MER1_type -230 94 5 479 285 91 43 chr1 18071143 18071329 -264122335 + MIR SINE MIR 59 253 -9 2359 159 54 0 chr1 18071367 18071776 -264121888 + MLT2C2 LTR ERVL 2 480 -40 315 331 28 35 chr1 18072196 18072338 -264121326 + L2 LINE L2 2679 2819 -495 410 298 158 14 chr1 18072448 18072663 -264121001 - MIR SINE MIR -3 259 14 410 260 0 55 chr1 18072678 18072805 -264120859 + MIR SINE MIR 132 251 -11 261 280 154 32 chr1 18073455 18073643 -264120021 - MIR SINE MIR -12 250 42 405 285 124 59 chr1 18073730 18073916 -264119748 + MIR SINE MIR 65 262 0 2256 97 3 0 chr1 18074298 18074598 -264119066 + AluSp SINE Alu 1 301 -12 200 359 78 14 chr1 18075527 18075669 -264117995 + L2 LINE L2 2967 3117 -155 21 36 0 0 chr1 18075866 18075894 -264117770 + GC_rich Low_complexity Low_complexity 1 28 0 218 300 0 36 chr1 18076403 18076513 -264117151 + C-rich Low_complexity Low_complexity 2 107 0 185 250 36 18 chr1 18077401 18077457 -264116207 + MIR3 SINE MIR 114 170 -38 1193 179 49 11 chr1 18077949 18078234 -264115430 - MER33 DNA MER1_type -28 296 1 1016 148 133 15 chr1 18078242 18078438 -264115226 - MER20 DNA MER1_type 0 219 1 439 268 155 12 chr1 18078585 18078753 -264114911 - MIR SINE MIR -70 192 1 293 203 34 0 chr1 18079186 18079245 -264114419 + MIR SINE MIR 62 122 -86 866 271 41 22 chr1 18080432 18080746 -264112918 + L2 LINE L2 2825 3144 -169 575 184 73 124 chr1 18080754 18080979 -264112685 - MIR SINE MIR -2 260 38 321 26 0 0 chr1 18081067 18081105 -264112559 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 498 339 22 0 chr1 18081841 18082064 -264111600 + MIR SINE MIR 20 245 -17 348 24 0 0 chr1 18082089 18082130 -264111534 + (TAA)n Simple_repeat Simple_repeat 2 42 0 288 323 30 0 chr1 18082282 18082381 -264111283 - L2 LINE L2 -190 3082 2981 208 333 10 21 chr1 18082504 18082600 -264111064 - L2 LINE L2 -510 2804 2710 629 271 56 113 chr1 18083165 18083588 -264110076 + L2 LINE L2 2548 2994 -278 950 217 27 0 chr1 18083588 18083772 -264109892 + MER5A DNA MER1_type 1 189 0 629 271 56 113 chr1 18083772 18083985 -264109679 + L2 LINE L2 2994 3146 -126 2147 100 0 23 chr1 18083985 18084295 -264109369 + AluSx SINE Alu 3 305 -7 629 271 56 113 chr1 18084295 18084415 -264109249 + L2 LINE L2 3146 3271 -1 198 0 0 0 chr1 18084500 18084522 -264109142 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1933 151 0 3 chr1 18085587 18085892 -264107772 + AluSx SINE Alu 1 304 -8 2305 96 0 16 chr1 18085961 18086275 -264107389 - AluSx SINE Alu -3 309 1 333 258 62 10 chr1 18086357 18086454 -264107210 - MIR3 SINE MIR -49 159 58 436 278 48 16 chr1 18086465 18086652 -264107012 + MER113 DNA MER1_type? 2 194 -327 201 326 70 0 chr1 18086798 18086884 -264106780 - L2 LINE L2 -37 3235 3144 188 241 48 96 chr1 18087028 18087111 -264106553 - MIR3 SINE MIR -127 81 3 2246 94 0 0 chr1 18087129 18087428 -264106236 + AluSx SINE Alu 1 299 -13 384 253 72 98 chr1 18087764 18087958 -264105706 - MER5A DNA MER1_type 0 189 1 198 277 15 15 chr1 18088083 18088148 -264105516 + MER5A DNA MER1_type 125 189 0 865 248 82 32 chr1 18088360 18088645 -264105019 - MLT1B LTR MaLR -23 442 119 2242 97 7 0 chr1 18088645 18088944 -264104720 + AluSx SINE Alu 11 311 -1 865 248 82 32 chr1 18088944 18089070 -264104594 - MLT1B LTR MaLR -346 119 1 334 285 17 76 chr1 18089432 18089604 -264104060 - MER5A DNA MER1_type -2 187 26 1528 172 11 19 chr1 18089665 18089684 -264103980 - AluJb SINE Alu -19 293 275 2134 117 7 0 chr1 18089684 18089992 -264103672 + AluSp SINE Alu 1 310 -3 1528 172 11 19 chr1 18089992 18090239 -264103425 - AluJb SINE Alu -37 275 29 667 185 16 53 chr1 18090565 18090645 -264103019 - MER33 DNA MER1_type -2261 324 243 2519 46 3 0 chr1 18090645 18090951 -264102713 + AluY SINE Alu 1 307 -4 667 185 16 53 chr1 18090951 18091059 -264102605 - MER33 DNA MER1_type -2342 243 143 2088 73 3 31 chr1 18091059 18091377 -264102287 - AluY SINE Alu 0 310 1 1263 148 5 18 chr1 18091379 18091596 -264102068 - AluJo SINE Alu -15 297 84 425 208 57 9 chr1 18091598 18091704 -264101960 - MER33 DNA MER1_type -185 139 29 473 299 55 6 chr1 18092843 18093007 -264100657 - MIR3 SINE MIR -34 174 3 192 275 0 58 chr1 18093151 18093220 -264100444 - MIR3 SINE MIR -9 199 135 469 325 5 41 chr1 18093385 18093582 -264100082 - MIR SINE MIR -3 259 70 2280 97 0 0 chr1 18094418 18094717 -264098947 + AluSg SINE Alu 1 299 -11 2277 100 0 0 chr1 18094793 18095102 -264098562 + AluSx SINE Alu 1 309 -3 337 274 96 35 chr1 18095422 18095642 -264098022 + MIR SINE MIR 14 252 -10 436 268 24 16 chr1 18095779 18095906 -264097758 + MIR3 SINE MIR 49 176 -32 250 289 94 8 chr1 18097211 18097339 -264096325 + MIR3 SINE MIR 15 153 -55 183 354 46 0 chr1 18097704 18097769 -264095895 + MIR SINE MIR 108 175 -87 * 210 361 131 0 chr1 18097742 18097864 -264095800 + L2 LINE L2 3132 3269 -3 1146 152 37 5 chr1 18098326 18098517 -264095147 + MER20 DNA MER1_type 6 202 -17 460 230 9 0 chr1 18098556 18098663 -264095001 - MIR SINE MIR -62 146 40 266 347 41 16 chr1 18098995 18099116 -264094548 + MIR SINE MIR 23 146 -62 194 207 17 0 chr1 18099906 18099964 -264093700 + (TTCA)n Simple_repeat Simple_repeat 3 61 0 769 287 68 53 chr1 18100673 18101264 -264092400 - L2 LINE L2 -1 3271 2667 2224 126 0 0 chr1 18101984 18102294 -264091370 + AluSg SINE Alu 1 310 0 243 211 60 75 chr1 18102302 18102399 -264091265 + L1ME4a LINE L1 5964 6060 -61 1938 167 0 0 chr1 18102399 18102711 -264090953 - AluJo SINE Alu 0 312 1 243 211 60 75 chr1 18102711 18102746 -264090918 + L1ME4a LINE L1 6060 6094 -27 817 250 162 26 chr1 18103485 18104004 -264089660 - L2 LINE L2 -17 3296 2689 333 0 0 0 chr1 18104759 18104796 -264088868 + (CA)n Simple_repeat Simple_repeat 2 38 0 264 331 6 79 chr1 18105014 18105192 -264088472 + MIR SINE MIR 94 258 -4 473 247 0 0 chr1 18105355 18105448 -264088216 - MER81 DNA DNA -21 93 1 384 253 58 86 chr1 18106351 18106446 -264087218 - MIR SINE MIR -82 180 91 2331 92 0 0 chr1 18106446 18106751 -264086913 - AluSg SINE Alu -5 305 1 384 253 58 86 chr1 18106751 18106829 -264086835 - MIR SINE MIR -171 91 12 1854 133 0 23 chr1 18107572 18107907 -264085757 + AluSx SINE Alu 1 312 0 519 297 35 0 chr1 18108215 18108360 -264085304 + MIR SINE MIR 5 154 -108 269 241 46 46 chr1 18108425 18108512 -264085152 - MIR SINE MIR -63 145 59 262 285 42 145 chr1 18109641 18109855 -264083809 + MIR SINE MIR 19 210 -52 858 239 26 90 chr1 18110312 18110580 -264083084 + MIR SINE MIR 1 251 -11 467 299 224 5 chr1 18110806 18111020 -264082644 + MIR SINE MIR 2 262 0 238 213 0 0 chr1 18111089 18111136 -264082528 - L2 LINE L2 0 3313 3267 384 274 98 34 chr1 18111773 18111977 -264081687 + L1MC4a LINE L1 5656 5872 -1936 1181 140 23 0 chr1 18112020 18112191 -264081473 - AluSg/x SINE Alu -17 293 119 1959 145 3 10 chr1 18112205 18112502 -264081162 + AluJo SINE Alu 1 295 -17 272 238 16 82 chr1 18112903 18113025 -264080639 + MIR3 SINE MIR 88 201 -7 2133 118 38 3 chr1 18113259 18113547 -264080117 - AluSx SINE Alu -14 298 1 251 28 28 0 chr1 18113548 18113584 -264080080 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 668 280 55 38 chr1 18113912 18114148 -264079516 + MIR SINE MIR 23 262 0 275 173 0 0 chr1 18114682 18114734 -264078930 + MER117 DNA MER1_type 61 112 -85 792 288 26 34 chr1 18114813 18115179 -264078485 - MLT1I LTR MaLR -32 377 47 2157 118 14 0 chr1 18115287 18115584 -264078080 + AluSx SINE Alu 1 301 -11 277 286 0 8 chr1 18115669 18115788 -264077876 + (CA)n Simple_repeat Simple_repeat 1 118 0 1987 147 4 0 chr1 18116386 18116690 -264076974 + AluJb SINE Alu 5 309 0 1711 150 58 0 chr1 18116690 18116964 -264076700 + AluSx SINE Alu 1 290 -22 2386 74 3 0 chr1 18116967 18117277 -264076387 + AluSp SINE Alu 1 311 0 343 274 83 83 chr1 18117713 18117954 -264075710 - L2 LINE L2 0 3272 3032 * 1093 284 120 27 chr1 18117953 18118495 -264075169 - L2 LINE L2 -13 3300 2726 2039 120 23 23 chr1 18118501 18118810 -264074854 + AluSc SINE Alu 1 309 0 194 189 0 0 chr1 18118812 18118849 -264074815 - L2 LINE L2 -221 3051 3015 2240 116 0 0 chr1 18118867 18119160 -264074504 + AluSg SINE Alu 3 295 -15 935 203 10 0 chr1 18119860 18120057 -264073607 - MER33 DNA MER1_type -116 208 10 736 205 0 8 chr1 18120843 18120965 -264072699 + AluJo/FLAM SINE Alu 1 121 -191 2345 107 0 0 chr1 18120968 18121268 -264072396 - AluSq SINE Alu -13 300 1 1311 130 39 0 chr1 18121601 18121808 -264071856 - L1PA16 LINE L1 0 6166 5952 474 234 0 16 chr1 18121813 18121937 -264071727 - L1MB4 LINE L1 0 6180 6059 2494 70 0 0 chr1 18121944 18122242 -264071422 - AluY SINE Alu -13 298 1 1033 236 54 8 chr1 18123159 18123400 -264070264 + MIR SINE MIR 11 262 0 231 238 79 0 chr1 18124208 18124271 -264069393 + MIR SINE MIR 83 150 -112 871 159 0 7 chr1 18124274 18124412 -264069252 + FLAM_C SINE Alu 1 137 -6 2202 124 0 0 chr1 18124416 18124714 -264068950 + AluSx SINE Alu 1 298 -14 369 234 112 0 chr1 18124714 18124821 -264068843 + MIR SINE MIR 142 260 -2 187 250 23 0 chr1 18124888 18124932 -264068732 + L2 LINE L2 3210 3254 -18 246 272 99 0 chr1 18125378 18125459 -264068205 + MIR SINE MIR 43 131 -77 307 273 0 23 chr1 18125623 18125795 -264067869 + (CATA)n Simple_repeat Simple_repeat 2 169 0 320 272 19 19 chr1 18125809 18125912 -264067752 + (CATA)n Simple_repeat Simple_repeat 4 106 0 259 269 378 0 chr1 18125912 18126068 -264067596 + MIR SINE MIR 36 250 -12 378 293 8 32 chr1 18127633 18127756 -264065908 - L2 LINE L2 -1 3271 3152 198 103 0 0 chr1 18128146 18128175 -264065489 + (T)n Simple_repeat Simple_repeat 1 29 0 729 211 138 32 chr1 18128857 18128917 -264064747 - LTR16A1 LTR ERVL -11 446 394 1844 146 3 32 chr1 18128917 18129226 -264064438 + AluJo SINE Alu 1 300 -12 729 211 138 32 chr1 18129226 18129412 -264064252 - LTR16A1 LTR ERVL -63 394 174 2246 109 7 7 chr1 18129916 18130220 -264063444 - AluSc SINE Alu -1 308 5 1578 123 42 19 chr1 18130419 18130728 -264062936 - MER33 DNA MER1_type 0 324 9 2317 101 3 0 chr1 18131751 18132049 -264061615 + AluSx SINE Alu 1 299 -13 264 216 0 0 chr1 18132076 18132127 -264061537 + L2 LINE L2 3221 3271 -1 271 200 40 0 chr1 18132205 18132280 -264061384 - MER116 DNA Mariner -2 78 1 825 222 58 0 chr1 18132281 18132452 -264061212 - MIR SINE MIR -54 208 28 2236 135 0 0 chr1 18132498 18132810 -264060854 + AluSx SINE Alu 1 312 0 384 320 8 0 chr1 18133153 18133281 -264060383 + MER94 DNA DNA 5 133 -1 184 339 0 0 chr1 18133298 18133360 -264060304 - L2 LINE L2 -86 3186 3125 190 243 0 0 chr1 18133375 18133412 -264060252 + L2 LINE L2 3277 3313 0 267 335 79 13 chr1 18133810 18133962 -264059702 + L1MC4a LINE L1 5763 5924 -1884 2059 89 7 55 chr1 18133979 18134297 -264059367 + AluSg SINE Alu 1 304 0 470 314 63 22 chr1 18134662 18134860 -264058804 - MIR SINE MIR -52 210 6 481 278 37 25 chr1 18135633 18135795 -264057869 + MIR SINE MIR 72 235 -27 1734 138 19 80 chr1 18136072 18136203 -264057461 + AluJo SINE Alu 3 140 -172 2365 88 3 0 chr1 18136203 18136498 -264057166 - AluSx SINE Alu -16 296 1 1734 138 19 80 chr1 18136498 18136691 -264056973 + AluJo SINE Alu 140 307 -5 341 340 101 30 chr1 18136746 18137043 -264056621 - L2 LINE L2 -99 3173 2856 292 290 180 10 chr1 18137079 18137279 -264056385 - L2 LINE L2 -801 2513 2280 2380 84 0 10 chr1 18137326 18137625 -264056039 + AluY SINE Alu 1 296 -15 2025 146 0 16 chr1 18137846 18138161 -264055503 - AluJb SINE Alu -2 310 1 268 337 22 0 chr1 18139052 18139144 -264054520 - MIR3 SINE MIR -34 174 81 183 355 16 0 chr1 18139603 18139665 -264053999 + MIR SINE MIR 157 219 -43 466 250 74 27 chr1 18139764 18139912 -264053752 + L2 LINE L2 3159 3313 0 1524 111 97 62 chr1 18140110 18140244 -264053420 + AluJo SINE Alu 1 129 -183 2454 73 0 7 chr1 18140244 18140547 -264053117 + AluSg1 SINE Alu 1 301 -8 1524 111 97 62 chr1 18140547 18140700 -264052964 + AluJo SINE Alu 129 298 -14 2393 81 0 3 chr1 18140702 18141000 -264052664 + AluSg SINE Alu 1 297 -13 305 315 27 36 chr1 18141682 18141793 -264051871 - MIR SINE MIR -147 115 6 187 242 187 11 chr1 18142053 18142144 -264051520 + MIR SINE MIR 119 225 -37 204 229 177 42 chr1 18142606 18142702 -264050962 + MIR SINE MIR 40 148 -114 190 288 38 25 chr1 18143129 18143209 -264050455 + L2 LINE L2 3141 3221 -92 2340 93 0 26 chr1 18143232 18143544 -264050120 + AluSq SINE Alu 2 305 -8 396 299 26 0 chr1 18143689 18143806 -264049858 - MIR SINE MIR -90 172 53 208 311 179 0 chr1 18144390 18144496 -264049168 + MIR SINE MIR 126 250 -12 2242 99 0 20 chr1 18144707 18145011 -264048653 - AluSq SINE Alu -15 298 1 2015 98 57 14 chr1 18145431 18145728 -264047936 + AluYa5 SINE Alu 2 311 0 1957 149 14 0 chr1 18145781 18146076 -264047588 + AluSx SINE Alu 1 299 -13 1689 168 75 0 chr1 18146087 18146367 -264047297 + AluJo SINE Alu 1 301 -11 2291 113 0 19 chr1 18146367 18146686 -264046978 + AluSq SINE Alu 1 313 0 2939 187 14 50 chr1 18146791 18147401 -264046263 + L1MD1 LINE L1 5560 6190 -52 1555 172 25 21 chr1 18147401 18147680 -264045984 + AluJb SINE Alu 3 282 -30 1864 150 0 21 chr1 18147680 18147967 -264045697 - AluSx SINE Alu -15 297 17 2939 187 14 50 chr1 18147967 18147992 -264045672 + L1MD1 LINE L1 6189 6213 -29 2311 122 3 0 chr1 18147992 18148303 -264045361 - AluSx SINE Alu 0 312 1 2939 187 14 50 chr1 18148303 18148361 -264045303 + L1MD1 LINE L1 6213 6232 -10 2263 112 3 0 chr1 18148361 18148664 -264045000 + AluSp SINE Alu 1 304 -9 950 215 127 16 chr1 18148679 18148995 -264044669 + L1ME1 LINE L1 5811 6161 -5 1039 206 84 4 chr1 18149327 18149613 -264044051 - MER51A LTR ERV1 0 640 334 1701 183 52 0 chr1 18149749 18150038 -264043626 - AluJb SINE Alu 0 312 9 302 278 69 62 chr1 18150208 18150352 -264043312 + L2 LINE L2 3169 3313 0 2221 127 0 3 chr1 18150752 18151052 -264042612 + AluSx SINE Alu 1 299 -13 1308 260 88 8 chr1 18151316 18151681 -264041983 - MLT1E2 LTR MaLR -1 625 232 316 324 77 53 chr1 18152004 18152117 -264041547 + L1M4 LINE L1 2725 2834 -3312 2393 101 3 0 chr1 18152117 18152423 -264041241 + AluSx SINE Alu 1 307 -5 316 324 77 53 chr1 18152423 18152556 -264041108 + L1M4 LINE L1 2834 2977 -3169 1925 163 7 0 chr1 18152593 18152882 -264040782 - AluJb SINE Alu -21 291 1 706 274 18 27 chr1 18152929 18153152 -264040512 + L1ME LINE L1 11 231 -5839 354 151 0 0 chr1 18153193 18153246 -264040418 + Alu SINE Alu 1 53 -248 1618 114 0 0 chr1 18153247 18153458 -264040206 + AluSg/x SINE Alu 92 302 -10 488 250 0 8 chr1 18153461 18153589 -264040075 + L1ME LINE L1 276 402 -5668 229 272 0 12 chr1 18153592 18153673 -264039991 + L1ME LINE L1 518 597 -5473 2140 110 27 0 chr1 18153688 18153988 -264039676 - AluSx SINE Alu -2 310 3 2178 255 48 64 chr1 18153989 18154218 -264039446 + L1ME LINE L1 738 969 -5292 2318 115 3 3 chr1 18154218 18154530 -264039134 - AluSx SINE Alu 0 312 1 2178 255 48 64 chr1 18154530 18154614 -264039050 + L1ME LINE L1 969 1053 -5208 1655 181 3 35 chr1 18154614 18154901 -264038763 + AluJo SINE Alu 1 278 -34 2178 255 48 64 chr1 18154901 18155744 -264037920 + L1ME LINE L1 1053 1910 -4351 1563 142 18 121 chr1 18155744 18156075 -264037589 - AluJo SINE Alu -5 297 1 2178 255 48 64 chr1 18156075 18156375 -264037289 + L1ME LINE L1 1910 2213 -4048 1247 206 24 187 chr1 18156408 18157003 -264036661 + L1M4 LINE L1 3846 4341 -1805 685 227 45 23 chr1 18157041 18157165 -264036499 + L1M4 LINE L1 4108 4228 -1918 1670 142 3 87 chr1 18157165 18157225 -264036439 + AluJo SINE Alu 1 64 -248 2345 87 0 10 chr1 18157225 18157523 -264036141 - AluSp SINE Alu -18 295 1 1670 142 3 87 chr1 18157523 18157621 -264036043 + AluJo SINE Alu 64 169 -143 2022 153 0 0 chr1 18157621 18157909 -264035755 + AluSx SINE Alu 1 288 -24 1670 142 3 87 chr1 18157909 18157934 -264035730 + AluJo SINE Alu 169 304 -8 918 122 7 14 chr1 18157934 18158081 -264035583 + AluJb SINE Alu 159 304 -8 685 227 45 23 chr1 18158081 18158176 -264035488 + L1M4 LINE L1 4228 4332 -1814 757 146 0 46 chr1 18158421 18158551 -264035113 + FLAM_C SINE Alu 2 125 -18 332 275 10 53 chr1 18158563 18158735 -264034929 - L1MC4 LINE L1 -1339 6703 6500 343 143 95 19 chr1 18158752 18158857 -264034807 + L1M4 LINE L1 4314 4426 -1720 1052 168 33 37 chr1 18158860 18159074 -264034590 + AluJb SINE Alu 91 303 -9 1293 183 8 4 chr1 18159074 18159320 -264034344 + L1M4 LINE L1 4446 4692 -1454 1832 94 17 42 chr1 18159480 18159808 -264033856 - AluY SINE Alu 0 321 1 451 272 24 16 chr1 18160387 18160512 -264033152 + L2 LINE L2 3187 3312 -1 1815 106 4 0 chr1 18160698 18160944 -264032720 + AluSx SINE Alu 1 247 -65 1743 148 10 7 chr1 18160944 18161235 -264032429 + AluJb SINE Alu 16 307 -5 181 200 0 50 chr1 18161333 18161373 -264032291 - L2 LINE L2 -15 3298 3261 * 355 263 212 0 chr1 18161339 18161476 -264032188 - MIR SINE MIR -13 249 84 297 340 136 12 chr1 18161513 18161675 -264031989 - MIR SINE MIR -30 232 51 2110 83 45 0 chr1 18162891 18163179 -264030485 + AluSx SINE Alu 2 302 -10 383 223 47 54 chr1 18163393 18163541 -264030123 - MIR SINE MIR -95 167 21 21 0 0 0 chr1 18164075 18164096 -264029568 + AT_rich Low_complexity Low_complexity 1 21 0 784 144 30 23 chr1 18164289 18164421 -264029243 + FLAM_C SINE Alu 1 133 0 1950 76 4 0 chr1 18164441 18164692 -264028972 + AluSg SINE Alu 43 294 -16 1570 173 6 77 chr1 18165043 18165170 -264028494 + AluJo SINE Alu 2 136 -166 1874 128 45 0 chr1 18165170 18165458 -264028206 - AluSx SINE Alu -11 301 1 1570 173 6 77 chr1 18165458 18165654 -264028010 + AluJo SINE Alu 136 302 0 1010 76 0 0 chr1 18165815 18165947 -264027717 + AluSp/q SINE Alu 170 301 -12 1806 152 0 53 chr1 18165961 18166284 -264027380 + AluJo SINE Alu 7 312 0 385 292 22 73 chr1 18166321 18166499 -264027165 - MLT1J LTR MaLR -113 398 230 243 88 0 0 chr1 18167470 18167504 -264026160 + (TTC)n Simple_repeat Simple_repeat 2 35 0 241 260 173 10 chr1 18167887 18167991 -264025673 - Charlie8 DNA MER1_type -2270 147 27 26 0 0 0 chr1 18168421 18168447 -264025217 + AT_rich Low_complexity Low_complexity 1 26 0 607 175 0 124 chr1 18168448 18168585 -264025079 + FLAM_A SINE Alu 1 120 -13 2091 132 7 0 chr1 18168715 18169019 -264024645 + AluSx SINE Alu 1 306 -6 1440 148 26 0 chr1 18169325 18169555 -264024109 - MER46A DNA MER2_type 0 236 1 270 152 22 0 chr1 18169684 18169730 -264023934 - MER57A LTR ERV1 -66 337 291 1374 152 0 0 chr1 18169753 18169970 -264023694 + AluJo SINE Alu 86 302 -10 936 265 109 18 chr1 18169973 18170430 -264023234 - L1ME4a LINE L1 -92 6029 5531 420 313 55 15 chr1 18170618 18170819 -264022845 + MIR SINE MIR 2 210 -52 743 198 148 6 chr1 18173440 18173602 -264020062 - MSTD LTR MaLR 0 396 212 2240 73 3 17 chr1 18173615 18173915 -264019749 - AluSp SINE Alu -17 296 1 994 136 39 0 chr1 18173926 18174080 -264019584 - FRAM SINE Alu -20 156 1 970 165 29 0 chr1 18174081 18174251 -264019413 - MSTD LTR MaLR -221 175 1 352 83 0 0 chr1 18174645 18174693 -264018971 + MIR SINE MIR 204 251 -11 182 390 0 0 chr1 18174741 18174818 -264018846 + MER5A DNA MER1_type 95 171 -18 * 201 355 0 0 chr1 18174756 18174832 -264018832 - MER5B DNA MER1_type -98 80 5 583 223 54 43 chr1 18174938 18175122 -264018542 - MIR3 SINE MIR -4 204 19 1083 125 80 45 chr1 18175423 18175623 -264018041 + AluJo SINE Alu 83 289 -23 239 197 0 33 chr1 18175629 18175690 -264017974 + CT-rich Low_complexity Low_complexity 1 59 0 493 295 2 2 chr1 18176786 18176942 -264016722 + MIR SINE MIR 30 184 -63 2084 120 3 3 chr1 18177208 18177517 -264016147 + AluSx SINE Alu 1 309 -3 1092 172 6 0 chr1 18177657 18177831 -264015833 + FAM SINE Alu 1 175 0 587 156 0 11 chr1 18177850 18177940 -264015724 + FLAM_C SINE Alu 29 117 -26 1755 54 9 5 chr1 18178045 18178269 -264015395 - AluY SINE Alu -86 225 1 2523 50 0 0 chr1 18178349 18178652 -264015012 - AluY SINE Alu -8 303 1 238 256 71 0 chr1 18178702 18178777 -264014887 - L1MC/D LINE L1 -329 5792 5731 1722 112 80 14 chr1 18179365 18179651 -264014013 - AluSx SINE Alu -7 305 1 869 183 59 16 chr1 18179969 18180155 -264013509 + AluJo SINE Alu 115 308 -4 311 282 121 16 chr1 18180211 18180335 -264013329 + MIR SINE MIR 112 248 -14 1582 129 24 87 chr1 18180640 18180973 -264012691 + AluJb SINE Alu 1 312 0 387 0 0 0 chr1 18181560 18181603 -264012061 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 276 317 32 23 chr1 18181721 18181874 -264011790 - MIR SINE MIR -46 162 2 410 229 33 16 chr1 18182120 18182242 -264011422 + L2 LINE L2 2392 2515 -799 258 348 116 0 chr1 18182419 18182531 -264011133 + L2 LINE L2 3146 3270 -2 1218 100 6 0 chr1 18182946 18183116 -264010548 - AluSp SINE Alu -9 304 134 323 257 49 35 chr1 18183116 18183288 -264010376 - MIR SINE MIR -60 202 25 24 106 0 0 chr1 18183526 18183620 -264010044 + GC_rich Low_complexity Low_complexity 1 94 0 299 275 117 8 chr1 18184644 18184764 -264008900 + MIR SINE MIR 51 183 -79 592 243 20 7 chr1 18184791 18184943 -264008721 + MIR SINE MIR 59 212 -50 1891 121 0 0 chr1 18185000 18185264 -264008400 + AluSx SINE Alu 1 264 -48 1793 147 13 19 chr1 18185683 18185996 -264007668 + AluJo SINE Alu 1 311 -1 2094 72 20 46 chr1 18186403 18186709 -264006955 - AluY SINE Alu -13 298 1 221 254 34 17 chr1 18186912 18187002 -264006662 - MIR SINE MIR -64 144 80 1188 135 47 0 chr1 18187032 18187224 -264006440 + AluJb SINE Alu 91 291 -21 421 75 0 0 chr1 18187243 18187296 -264006368 + Alu SINE Alu 1 53 -259 213 39 0 0 chr1 18187313 18187339 -264006325 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 2586 39 0 0 chr1 18187528 18187834 -264005830 + AluY SINE Alu 2 307 -4 273 234 9 81 chr1 18187939 18188050 -264005614 - MER5A DNA MER1_type -44 145 43 1893 107 50 0 chr1 18188201 18188482 -264005182 + AluSx SINE Alu 1 295 -17 2309 94 0 0 chr1 18188827 18189125 -264004539 + AluSx SINE Alu 1 298 -14 2141 114 3 3 chr1 18189215 18189523 -264004141 - AluSx SINE Alu -2 310 3 301 324 45 40 chr1 18190038 18190214 -264003450 + MIR3 SINE MIR 17 193 -15 284 290 21 11 chr1 18190694 18190787 -264002877 + MIR3 SINE MIR 93 186 -22 487 314 21 21 chr1 18191093 18191287 -264002377 + MIR SINE MIR 15 208 -54 2237 112 0 0 chr1 18191416 18191721 -264001943 + AluSg SINE Alu 1 305 -5 393 22 0 0 chr1 18191746 18191792 -264001872 + (TG)n Simple_repeat Simple_repeat 1 46 0 2128 113 3 0 chr1 18191793 18192102 -264001562 - AluSq SINE Alu -3 310 1 385 268 10 0 chr1 18192110 18192207 -264001457 - LTR16C LTR ERVL -4 487 390 675 261 32 5 chr1 18192536 18192724 -264000940 - MIR SINE MIR 0 262 70 229 204 20 0 chr1 18193156 18193205 -264000459 + MIR SINE MIR 99 148 -60 196 314 48 19 chr1 18193672 18193777 -263999887 - MIR SINE MIR -74 188 81 2124 115 0 31 chr1 18193919 18194242 -263999422 - AluSq SINE Alu 0 313 1 495 308 103 6 chr1 18194244 18194400 -263999264 + MIR SINE MIR 79 249 -13 1430 157 0 0 chr1 18194412 18194647 -263999017 - AluJb SINE Alu -6 306 72 1980 142 3 0 chr1 18195450 18195753 -263997911 - AluSx SINE Alu -3 309 6 281 270 11 34 chr1 18195782 18195871 -263997793 + MIR SINE MIR 57 143 -119 2173 117 3 0 chr1 18195972 18196279 -263997385 - AluSq SINE Alu -5 308 1 313 321 171 20 chr1 18196500 18196752 -263996912 - L1MC4a LINE L1 -1869 5939 5650 1906 151 0 3 chr1 18196872 18197171 -263996493 + AluSx SINE Alu 1 298 -14 276 100 17 33 chr1 18197471 18197531 -263996133 + (TCCCC)n Simple_repeat Simple_repeat 3 61 0 2079 104 7 0 chr1 18197531 18197818 -263995846 - AluSq SINE Alu -24 289 1 229 26 26 26 chr1 18198029 18198067 -263995597 + MIR SINE MIR 108 145 -117 245 329 98 0 chr1 18198415 18198558 -263995106 + MIR3 SINE MIR 17 173 -35 1873 106 84 0 chr1 18199632 18199906 -263993758 + AluSx SINE Alu 1 297 -15 2144 111 0 3 chr1 18200416 18200714 -263992950 + AluSg SINE Alu 1 297 -13 2207 96 0 0 chr1 18200845 18201180 -263992484 + AluSx SINE Alu 1 335 0 207 295 181 13 chr1 18201261 18201410 -263992254 - L2 LINE L2 -182 3090 2917 1706 129 49 21 chr1 18201870 18202156 -263991508 + AluJb SINE Alu 1 294 -18 1961 144 0 3 chr1 18202161 18202453 -263991211 + AluSx SINE Alu 1 291 -21 429 318 101 28 chr1 18202484 18202701 -263990963 - MIR SINE MIR -19 243 11 383 250 150 14 chr1 18203737 18203877 -263989787 - MIR SINE MIR -15 247 89 861 157 0 0 chr1 18203993 18204127 -263989537 + AluJb SINE Alu 1 134 -178 2227 88 0 3 chr1 18204127 18204423 -263989241 + AluSx SINE Alu 1 295 -17 1945 110 3 17 chr1 18204559 18204859 -263988805 + AluSx SINE Alu 3 298 -14 347 226 65 0 chr1 18204921 18205014 -263988650 - MIR SINE MIR -123 139 41 1822 146 7 3 chr1 18205867 18206154 -263987510 + AluJb SINE Alu 1 288 -24 1908 107 50 11 chr1 18206162 18206442 -263987222 + AluSx SINE Alu 2 291 -21 2339 73 0 3 chr1 18206444 18206732 -263986932 + AluSq SINE Alu 1 320 0 277 30 0 0 chr1 18206732 18206765 -263986899 + (TAA)n Simple_repeat Simple_repeat 2 180 0 221 323 32 0 chr1 18206771 18206833 -263986831 - L2 LINE L2 -18 3295 3232 190 328 35 0 chr1 18207330 18207388 -263986276 + MIR SINE MIR 41 100 -162 2470 75 0 0 chr1 18209703 18210010 -263983654 - AluSx SINE Alu -5 307 1 353 226 349 7 chr1 18210016 18210162 -263983502 - MIR SINE MIR -51 211 16 2114 138 0 3 chr1 18211042 18211353 -263982311 - AluJb SINE Alu -2 310 1 282 370 24 51 chr1 18211810 18212064 -263981600 - L2 LINE L2 0 3313 3067 1844 142 6 29 chr1 18212386 18212697 -263980967 + AluSx SINE Alu 1 304 -8 1816 137 38 20 chr1 18212707 18213000 -263980664 + AluSx SINE Alu 1 298 -14 1612 218 98 26 chr1 18213000 18213160 -263980504 - LTR64 LTR ERVK -23 535 388 1738 128 39 64 chr1 18213160 18213472 -263980192 + AluJo SINE Alu 1 304 -8 1612 218 98 26 chr1 18213472 18213810 -263979854 - LTR64 LTR ERVK -170 388 1 206 277 214 46 chr1 18213810 18214048 -263979616 - L2 LINE L2 -721 2593 2316 601 192 0 96 chr1 18214095 18214241 -263979423 + FLAM_C SINE Alu 1 132 -1 187 359 17 0 chr1 18214271 18214388 -263979276 - L2 LINE L2 -1192 2122 2004 208 269 90 0 chr1 18214404 18214471 -263979193 + MIR SINE MIR 72 144 -118 25 75 0 0 chr1 18214812 18214865 -263978799 + GC_rich Low_complexity Low_complexity 1 53 0 699 279 128 28 chr1 18217598 18218020 -263975644 - L2 LINE L2 0 3272 2799 210 321 46 0 chr1 18218609 18218718 -263974946 + (CCCCAG)n Simple_repeat Simple_repeat 4 117 0 2063 115 10 13 chr1 18221305 18221610 -263972054 + AluSx SINE Alu 1 304 -8 436 249 24 79 chr1 18221685 18221850 -263971814 - MIR SINE MIR -74 188 33 440 214 164 13 chr1 18221879 18222064 -263971600 - MIR SINE MIR -37 225 3 543 267 109 50 chr1 18223211 18223533 -263970131 + MLT1K LTR MaLR 71 411 -177 404 50 0 17 chr1 18224125 18224185 -263969479 + (CA)n Simple_repeat Simple_repeat 2 60 0 183 364 0 0 chr1 18225151 18225217 -263968447 + MIR SINE MIR 106 171 -91 644 283 47 5 chr1 18226733 18226924 -263966740 + MIR SINE MIR 27 225 -37 191 280 65 65 chr1 18227284 18227391 -263966273 + MIR3 SINE MIR 82 188 -20 196 233 0 0 chr1 18227528 18227571 -263966093 + MER5A DNA MER1_type 60 102 -87 194 252 26 0 chr1 18228203 18228266 -263965398 - MIR SINE MIR -60 148 106 1941 125 41 0 chr1 18228300 18228595 -263965069 - AluJb SINE Alu 0 312 6 263 283 244 25 chr1 18229824 18230107 -263963557 + L2 LINE L2 2878 3222 -50 252 233 100 33 chr1 18230163 18230253 -263963411 - MIR SINE MIR -72 190 95 981 104 8 0 chr1 18230263 18230397 -263963267 + AluSx SINE Alu 1 135 -177 2048 123 10 0 chr1 18230397 18230697 -263962967 + AluSx SINE Alu 1 303 -9 2063 110 19 19 chr1 18230697 18231053 -263962611 + AluSg SINE Alu 1 358 0 1029 139 15 69 chr1 18231053 18231255 -263962409 + AluSx SINE Alu 120 310 0 2154 95 0 16 chr1 18231277 18231583 -263962081 + AluSx SINE Alu 1 301 -11 194 277 0 0 chr1 18231603 18231650 -263962014 - MIR SINE MIR -181 81 35 185 333 226 0 chr1 18231898 18232057 -263961607 + L2 LINE L2 2753 2947 -367 2211 114 0 3 chr1 18232172 18232478 -263961186 - AluSq SINE Alu -8 305 1 478 165 0 0 chr1 18232478 18232563 -263961101 - L1MB4 LINE L1 -40 6140 6056 424 116 0 0 chr1 18232571 18232640 -263961024 + AluSq/x SINE Alu 63 131 -172 204 97 0 0 chr1 18232640 18232671 -263960993 + (TA)n Simple_repeat Simple_repeat 2 32 0 782 144 0 0 chr1 18232705 18232816 -263960848 + AluSx SINE Alu 2 112 -201 2329 54 40 7 chr1 18232816 18233114 -263960550 - AluYa5 SINE Alu -3 308 1 1499 100 0 9 chr1 18233115 18233325 -263960339 + AluSx SINE Alu 101 308 -2 304 253 11 0 chr1 18233325 18233416 -263960248 - MER2 DNA MER2_type -138 207 116 1434 189 63 28 chr1 18233489 18233775 -263959889 + AluJb SINE Alu 6 301 -11 1388 126 19 0 chr1 18233808 18234015 -263959649 + AluJo SINE Alu 1 211 -101 225 0 0 0 chr1 18234147 18234172 -263959492 + (CAAAAA)n Simple_repeat Simple_repeat 2 26 0 655 210 146 36 chr1 18234858 18235077 -263958587 - MIR SINE MIR 0 262 20 2149 118 3 10 chr1 18235079 18235393 -263958271 - AluSx SINE Alu 0 312 1 230 54 0 27 chr1 18235393 18235430 -263958234 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 445 148 0 125 chr1 18235433 18235561 -263958103 - LTR53 LTR ERVL -100 419 308 207 213 21 0 chr1 18235586 18235633 -263958031 - MIR SINE MIR -213 49 2 236 282 32 40 chr1 18235853 18235975 -263957689 - MIR SINE MIR -75 133 29 393 234 78 106 chr1 18235981 18236058 -263957606 + MIR SINE MIR 72 145 -117 2184 103 0 3 chr1 18236058 18236359 -263957305 + AluSx SINE Alu 5 304 -8 393 234 78 106 chr1 18236359 18236422 -263957242 + MIR SINE MIR 145 208 -54 869 250 10 10 chr1 18237129 18237337 -263956327 - MIR SINE MIR -10 252 45 28 48 0 0 chr1 18237586 18237628 -263956036 + AT_rich Low_complexity Low_complexity 1 42 0 2332 96 0 6 chr1 18237633 18237947 -263955717 + AluSq SINE Alu 1 312 -1 1791 166 3 0 chr1 18237963 18238252 -263955412 - AluJo SINE Alu -22 290 1 953 110 0 7 chr1 18238252 18238388 -263955276 - AluJb SINE Alu -177 135 1 217 254 0 84 chr1 18238472 18238543 -263955121 + L2 LINE L2 3200 3264 -8 1515 229 14 40 chr1 18238560 18238910 -263954754 + MER58B DNA MER1_type 1 341 0 263 283 11 33 chr1 18239097 18239189 -263954475 - MIR3 SINE MIR -41 167 78 449 259 38 8 chr1 18241358 18241489 -263952175 - MIR SINE MIR -68 194 60 322 267 224 6 chr1 18241681 18241851 -263951813 - MIR3 SINE MIR -12 250 45 208 305 37 0 chr1 18242303 18242385 -263951279 - L2 LINE L2 -263 3009 2925 399 295 15 95 chr1 18242829 18242876 -263950788 - MER91B DNA MER1_type -6 184 135 2066 111 3 3 chr1 18242876 18243174 -263950490 - AluY SINE Alu -13 298 1 399 295 15 95 chr1 18243174 18243202 -263950462 - MER91B DNA MER1_type -55 135 106 2151 102 10 0 chr1 18243202 18243497 -263950167 + AluSg SINE Alu 12 309 -1 399 295 15 95 chr1 18243497 18243620 -263950044 - MER91B DNA MER1_type -84 106 1 532 315 123 14 chr1 18243682 18243901 -263949763 - MIR SINE MIR -3 259 17 187 167 0 0 chr1 18244066 18244096 -263949568 - MER5A DNA MER1_type -105 84 55 217 233 12 4 chr1 18244544 18244610 -263949054 + MIR SINE MIR 77 145 -63 2112 109 7 3 chr1 18244720 18245013 -263948651 + AluSq SINE Alu 1 294 -19 2073 123 3 0 chr1 18245015 18245307 -263948357 + AluSq SINE Alu 1 293 -20 2225 109 3 0 chr1 18245309 18245613 -263948051 + AluSp SINE Alu 1 305 -8 549 256 62 12 chr1 18245624 18245784 -263947880 - MIR SINE MIR -17 245 78 487 297 52 24 chr1 18246166 18246378 -263947286 - MIR SINE MIR -35 227 10 268 304 25 0 chr1 18247139 18247218 -263946446 + MIR SINE MIR 41 121 -87 2003 129 33 0 chr1 18247249 18247551 -263946113 + AluSx SINE Alu 1 312 0 2067 88 29 0 chr1 18247859 18248183 -263945481 - AluSx SINE Alu 0 332 1 440 246 66 0 chr1 18248185 18248307 -263945357 - MIR SINE MIR -117 145 16 275 253 0 24 chr1 18248815 18248898 -263944766 + (CAGAGA)n Simple_repeat Simple_repeat 3 83 0 335 227 94 0 chr1 18250069 18250131 -263943533 + MIR SINE MIR 104 159 -103 2187 108 0 0 chr1 18250131 18250427 -263943237 - AluSx SINE Alu -16 296 1 335 227 94 0 chr1 18250427 18250477 -263943187 + MIR SINE MIR 159 231 -31 837 263 81 0 chr1 18250564 18250800 -263942864 + MIR SINE MIR 8 262 0 204 250 0 0 chr1 18250821 18250869 -263942795 + (TTA)n Simple_repeat Simple_repeat 3 50 0 289 303 64 18 chr1 18250870 18250979 -263942685 + MIR SINE MIR 58 171 -91 196 235 113 43 chr1 18251309 18251424 -263942240 + L2 LINE L2 2942 3064 -208 2326 80 0 3 chr1 18251818 18252120 -263941544 - AluY SINE Alu -8 303 3 2145 95 7 0 chr1 18252123 18252417 -263941247 - AluSx SINE Alu -16 296 1 1013 105 0 0 chr1 18252421 18252554 -263941110 - AluSq/x SINE Alu -179 133 1 273 362 0 0 chr1 18252770 18252864 -263940800 + MIR SINE MIR 165 258 -4 1768 160 45 0 chr1 18253081 18253369 -263940295 + AluJb SINE Alu 2 302 -10 868 152 0 0 chr1 18253376 18253501 -263940163 + FLAM_C SINE Alu 1 125 -8 320 202 293 0 chr1 18253524 18253623 -263940041 + MER3 DNA MER1_type 2 129 -80 2354 75 0 13 chr1 18253623 18253930 -263939734 - AluY SINE Alu -7 304 2 1503 126 0 0 chr1 18253931 18254146 -263939518 - AluSg/x SINE Alu -8 304 90 29 0 0 0 chr1 18254187 18254216 -263939448 + AT_rich Low_complexity Low_complexity 1 29 0 823 156 0 7 chr1 18254217 18254352 -263939312 + AluJo SINE Alu 1 134 -178 485 282 35 0 chr1 18454531 18454701 -263738963 + MIR3 SINE MIR 22 197 -11 447 311 5 62 chr1 18454878 18455071 -263738593 - MER5A DNA MER1_type -1 188 7 1042 201 6 0 chr1 18455102 18455276 -263738388 + FAM SINE Alu 1 175 0 2186 121 0 6 chr1 18455287 18455601 -263738063 + AluSx SINE Alu 1 312 0 404 317 7 28 chr1 18455720 18455865 -263737799 - MER5A DNA MER1_type -2 187 46 978 211 0 0 chr1 18456236 18456518 -263737146 + (TCCA)n Simple_repeat Simple_repeat 1 282 0 451 375 71 10 chr1 18456528 18456824 -263736840 - L2 LINE L2 -3 3269 2956 790 254 36 9 chr1 18457298 18457518 -263736146 + MIR SINE MIR 12 237 -25 330 282 44 9 chr1 18457605 18457757 -263735907 + MIR SINE MIR 31 140 -68 236 346 74 31 chr1 18458394 18458556 -263735108 - MIR SINE MIR -73 189 21 2212 99 3 0 chr1 18458799 18459091 -263734573 - AluSp SINE Alu -20 293 1 460 297 132 9 chr1 18459188 18459400 -263734264 + MIR SINE MIR 19 256 -6 385 267 69 0 chr1 18460135 18460251 -263733413 + MIR3 SINE MIR 6 129 -79 200 325 13 26 chr1 18460253 18460330 -263733334 - L2 LINE L2 0 3313 3238 1882 155 0 7 chr1 18460359 18460662 -263733002 + AluJb SINE Alu 1 301 -11 249 310 70 0 chr1 18460687 18460787 -263732877 + MIR SINE MIR 156 262 0 185 254 0 68 chr1 18461016 18461075 -263732589 + L2 LINE L2 3255 3309 -4 313 237 9 79 chr1 18461429 18461459 -263732205 + L2 LINE L2 3191 3222 -91 2017 140 0 0 chr1 18461459 18461759 -263731905 - AluJb SINE Alu -10 302 3 313 237 9 79 chr1 18461759 18461842 -263731822 + L2 LINE L2 3222 3296 -17 222 91 0 0 chr1 18461846 18461879 -263731785 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 382 273 109 8 chr1 18461902 18462030 -263731634 - MIR SINE MIR -108 154 14 212 309 31 21 chr1 18462030 18462127 -263731537 + L3 LINE CR1 1475 1572 -5 830 308 8 8 chr1 18462790 18463037 -263730627 + MIR SINE MIR 6 252 -10 1654 189 68 0 chr1 18463223 18463546 -263730118 - MLT1A1 LTR MaLR -12 353 9 1160 155 24 19 chr1 18464389 18464602 -263729062 - MER20 DNA MER1_type -2 217 4 2100 119 0 3 chr1 18465602 18465895 -263727769 - AluSx SINE Alu -20 292 1 455 289 7 20 chr1 18466456 18466608 -263727056 - MIR SINE MIR -6 256 107 370 295 45 15 chr1 18467257 18467391 -263726273 + MIR SINE MIR 38 174 -62 1939 259 153 21 chr1 18468345 18469772 -263723892 - L2 LINE L2 -3 3310 1672 2027 132 0 0 chr1 18469772 18470060 -263723604 - AluSx SINE Alu -24 288 1 1939 259 153 21 chr1 18470060 18470098 -263723566 - L2 LINE L2 -1641 1672 1640 244 279 48 39 chr1 18470900 18471004 -263722660 + L2 LINE L2 3202 3306 -7 234 324 59 7 chr1 18471335 18471471 -263722193 + MIR3 SINE MIR 60 202 -6 197 139 23 0 chr1 18471799 18471842 -263721822 + GA-rich Low_complexity Low_complexity 1 44 0 259 304 51 0 chr1 18472430 18472509 -263721155 + MIR3 SINE MIR 79 161 -47 311 248 0 74 chr1 18473469 18473590 -263720074 + MER5B DNA MER1_type 45 156 -22 1425 130 49 16 chr1 18473777 18474023 -263719641 - AluSx SINE Alu -25 287 34 2339 72 0 7 chr1 18474089 18474393 -263719271 + AluY SINE Alu 1 302 -9 180 0 0 0 chr1 18474393 18474413 -263719251 + (TA)n Simple_repeat Simple_repeat 2 21 0 791 174 8 0 chr1 18474416 18474548 -263719116 + FLAM_C SINE Alu 1 133 0 2095 90 0 23 chr1 18474845 18475145 -263718519 + AluSq SINE Alu 1 293 -20 204 125 0 0 chr1 18475149 18475181 -263718483 + (TA)n Simple_repeat Simple_repeat 1 32 0 1973 112 3 24 chr1 18475189 18475483 -263718181 + AluSq SINE Alu 1 288 -25 2281 97 0 0 chr1 18475494 18475794 -263717870 + AluSx SINE Alu 1 300 -12 327 286 28 99 chr1 18475802 18475835 -263717829 - MLT1I LTR MaLR -46 363 329 2240 87 0 10 chr1 18475835 18475968 -263717696 + AluSg SINE Alu 1 134 -176 2128 112 0 3 chr1 18475968 18476272 -263717392 + AluSg SINE Alu 1 303 -7 2240 87 0 10 chr1 18476272 18476438 -263717226 + AluSg SINE Alu 134 297 -13 1998 110 3 36 chr1 18476440 18476749 -263716915 + AluY SINE Alu 3 301 -10 327 286 28 99 chr1 18476749 18476894 -263716770 - MLT1I LTR MaLR -81 328 195 1887 146 3 3 chr1 18477090 18477392 -263716272 - AluSx SINE Alu -10 302 1 581 264 90 12 chr1 18477422 18477627 -263716037 - MIR SINE MIR -1 261 41 2192 82 3 3 chr1 18477627 18477919 -263715745 - AluSp SINE Alu -21 292 1 581 264 90 12 chr1 18477919 18477941 -263715723 - MIR SINE MIR -221 41 22 817 182 0 8 chr1 18478056 18478188 -263715476 + FLAM_C SINE Alu 1 131 -2 186 43 0 0 chr1 18478420 18478443 -263715221 + (T)n Simple_repeat Simple_repeat 1 23 0 27 29 0 0 chr1 18478454 18478488 -263715176 + AT_rich Low_complexity Low_complexity 1 34 0 598 39 0 0 chr1 18478494 18478572 -263715092 - L1PA3 LINE L1 0 6155 6078 502 266 56 0 chr1 18478600 18478743 -263714921 - MIR SINE MIR -107 155 5 750 174 8 23 chr1 18478924 18479056 -263714608 + FLAM_C SINE Alu 1 130 -3 1372 151 13 0 chr1 18479086 18479311 -263714353 - AluSx SINE Alu -84 228 1 357 299 136 0 chr1 18479320 18479467 -263714197 + MIR SINE MIR 81 247 -15 2136 117 0 0 chr1 18480061 18480351 -263713313 - AluSx SINE Alu -22 290 1 218 305 0 0 chr1 18480425 18480484 -263713180 + C-rich Low_complexity Low_complexity 2 60 0 2160 126 0 0 chr1 18480623 18480933 -263712731 - AluSx SINE Alu -2 310 1 391 325 44 58 chr1 18481670 18481765 -263711899 + MIR SINE MIR 58 153 -109 846 146 0 0 chr1 18481765 18481888 -263711776 + FLAM_C SINE Alu 1 123 -10 391 325 44 58 chr1 18481888 18481998 -263711666 + MIR SINE MIR 153 260 -2 1011 147 0 6 chr1 18482000 18482163 -263711501 - AluSg/x SINE Alu -12 298 137 419 337 35 25 chr1 18482476 18482675 -263710989 - L2 LINE L2 0 3313 3113 514 283 70 6 chr1 18482816 18482997 -263710667 - MIR SINE MIR -47 215 25 481 252 17 8 chr1 18483489 18483608 -263710056 + MIR SINE MIR 15 134 -128 2030 116 7 7 chr1 18483637 18483930 -263709734 - AluSx SINE Alu -19 293 1 1660 173 3 3 chr1 18483939 18484228 -263709436 - AluJo SINE Alu -23 289 1 2073 119 0 0 chr1 18484262 18484568 -263709096 + AluSx SINE Alu 1 306 0 24 0 0 0 chr1 18484568 18484592 -263709072 + AT_rich Low_complexity Low_complexity 1 24 0 605 278 56 39 chr1 18484780 18485064 -263708600 - MARNA DNA Mariner -39 547 259 2180 91 3 57 chr1 18485309 18485640 -263708024 - AluSp SINE Alu 0 313 1 1985 122 4 0 chr1 18485672 18485951 -263707713 - AluSx SINE Alu -32 280 1 469 202 24 24 chr1 18486644 18486768 -263706896 + MER20 DNA MER1_type 1 124 -95 2155 110 0 19 chr1 18486796 18487114 -263706550 - AluSx SINE Alu 0 312 1 1663 195 20 0 chr1 18487149 18487451 -263706213 - AluJb SINE Alu -4 308 1 204 243 0 0 chr1 18488514 18488551 -263705113 - MIR SINE MIR -193 69 33 317 287 68 12 chr1 18488669 18488834 -263704830 + MIR SINE MIR 25 207 -55 1645 139 68 7 chr1 18488837 18489118 -263704546 - AluSx SINE Alu -5 307 10 2051 124 0 7 chr1 18489170 18489477 -263704187 - AluSx SINE Alu -7 305 1 1084 201 18 27 chr1 18489506 18489730 -263703934 - MER58A DNA MER1_type 0 224 3 2230 108 0 34 chr1 18490024 18490347 -263703317 + AluSx SINE Alu 1 312 0 2176 81 3 20 chr1 18490403 18490700 -263702964 + AluSp SINE Alu 2 293 -20 367 226 0 21 chr1 18490751 18490844 -263702820 - MIR SINE MIR -51 211 121 1813 148 23 7 chr1 18490847 18491150 -263702514 + AluJb SINE Alu 5 312 0 484 120 13 13 chr1 18491152 18491227 -263702437 + AluSc SINE Alu 83 157 -152 1049 111 0 0 chr1 18491328 18491512 -263702152 + AluSg/x SINE Alu 140 323 0 794 144 0 0 chr1 18491522 18491640 -263702024 - AluJb SINE Alu -194 118 1 2093 115 3 16 chr1 18491873 18492187 -263701477 - AluSx SINE Alu -2 310 1 687 225 45 82 chr1 18492199 18492271 -263701393 - L1ME2 LINE L1 0 6164 6091 1901 144 0 3 chr1 18492271 18492569 -263701095 - AluSx SINE Alu -15 297 1 687 225 45 82 chr1 18492569 18492740 -263700924 - L1ME2 LINE L1 -73 6091 5930 1931 130 0 3 chr1 18492740 18493047 -263700617 - AluSx SINE Alu 0 306 1 1953 122 0 23 chr1 18493047 18493350 -263700314 - AluSx SINE Alu -16 296 1 667 222 11 23 chr1 18493419 18493595 -263700069 - MER34C LTR ERV1 -58 527 354 1977 109 23 3 chr1 18493698 18494001 -263699663 + AluSx SINE Alu 1 309 -3 2190 80 36 17 chr1 18494006 18494307 -263699357 + AluSx SINE Alu 6 312 0 2378 120 14 16 chr1 18494307 18494675 -263698989 - MER34C LTR ERV1 -214 371 5 1669 213 26 62 chr1 18494679 18494994 -263698670 - L1ME2 LINE L1 -361 5803 5511 1612 167 0 52 chr1 18494994 18495299 -263698365 - AluJo SINE Alu -11 301 13 1669 213 26 62 chr1 18495299 18495485 -263698179 - L1ME2 LINE L1 -653 5511 5320 1667 177 0 0 chr1 18495495 18495772 -263697892 + AluJo SINE Alu 1 277 -35 1444 170 98 14 chr1 18495774 18496050 -263697614 - AluJo SINE Alu -1 301 3 1977 111 3 17 chr1 18496081 18496369 -263697295 + AluSg SINE Alu 1 284 -26 854 67 8 17 chr1 18496482 18496601 -263697063 - AluSp SINE Alu -195 118 1 548 71 38 4 chr1 18496656 18496866 -263696798 + AluSp SINE Alu 1 296 -17 2420 57 0 0 chr1 18496955 18497252 -263696412 + AluY SINE Alu 1 297 -14 923 161 0 0 chr1 18497252 18497395 -263696269 + AluSg/x SINE Alu 134 276 -36 216 0 0 0 chr1 18497395 18497419 -263696245 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 1435 160 93 4 chr1 18497502 18497770 -263695894 - AluJb SINE Alu -20 292 1 2036 123 3 3 chr1 18497795 18498097 -263695567 - AluSx SINE Alu -10 302 1 1635 153 57 7 chr1 18498103 18498385 -263695279 - AluSx SINE Alu -16 296 1 3109 108 15 2 chr1 18498385 18498846 -263694818 + MER41A LTR ERV1 88 554 0 2255 91 0 0 chr1 18498872 18499168 -263694496 + AluSx SINE Alu 1 296 -16 836 199 6 34 chr1 18499216 18499392 -263694272 - AluJo SINE Alu -138 174 4 2018 122 3 10 chr1 18499456 18499787 -263693877 - AluSg SINE Alu 0 310 1 1026 167 5 21 chr1 18499790 18499982 -263693682 - AluSg/x SINE Alu -3 307 119 328 119 0 30 chr1 18499984 18500051 -263693613 - L1M4 LINE L1 -2896 3250 3186 1057 162 0 6 chr1 18500052 18500225 -263693439 - AluSg/x SINE Alu -18 294 123 665 244 74 106 chr1 18500231 18500279 -263693385 - L1M4 LINE L1 -2875 3271 3223 2025 102 48 3 chr1 18500279 18500574 -263693090 - AluSg SINE Alu -2 308 1 665 244 74 106 chr1 18500574 18500808 -263692856 - L1M4 LINE L1 -2923 3223 2929 1111 221 0 71 chr1 18500809 18500891 -263692773 + AluJb SINE Alu 1 87 -225 2203 93 3 3 chr1 18500891 18501191 -263692473 + AluSq SINE Alu 1 300 -13 1111 221 0 71 chr1 18501191 18501402 -263692262 + AluJb SINE Alu 87 273 -39 672 328 25 62 chr1 18501479 18501927 -263691737 - L1MEc LINE L1 -5930 466 36 2011 115 10 7 chr1 18501948 18502253 -263691411 - AluSx SINE Alu -5 307 2 1312 120 163 35 chr1 18502284 18502542 -263691122 - AluSg1 SINE Alu -18 291 1 1384 164 8 20 chr1 18502909 18503153 -263690511 + AluJb SINE Alu 72 312 0 358 263 127 0 chr1 18503202 18503320 -263690344 + MIR3 SINE MIR 54 186 -22 362 299 85 45 chr1 18503704 18503905 -263689759 + MIR SINE MIR 53 261 -1 1990 112 0 24 chr1 18503926 18504221 -263689443 - AluJo SINE Alu -16 296 9 487 284 46 67 chr1 18504368 18504562 -263689102 - MIR3 SINE MIR -1 207 18 580 297 57 31 chr1 18504847 18505005 -263688659 + MIR SINE MIR 28 197 -65 1880 137 3 78 chr1 18505005 18505328 -263688336 + AluSx SINE Alu 1 297 -15 580 297 57 31 chr1 18505328 18505396 -263688268 + MIR SINE MIR 197 262 0 232 236 83 14 chr1 18505419 18505491 -263688173 - MIR SINE MIR -111 151 75 222 219 123 41 chr1 18505791 18505864 -263687800 + MIR SINE MIR 38 116 -92 264 315 0 0 chr1 18506356 18506429 -263687235 + L2 LINE L2 3189 3261 -11 246 319 49 59 chr1 18506526 18506730 -263686934 + MIR SINE MIR 36 237 -25 655 318 134 15 chr1 18506755 18506955 -263686709 + L2 LINE L2 2071 2246 -1068 2231 119 3 3 chr1 18506955 18507265 -263686399 - AluSq SINE Alu -3 310 1 655 318 134 15 chr1 18507265 18507668 -263685996 + L2 LINE L2 2246 2746 -568 201 366 38 53 chr1 18507678 18507809 -263685855 + L2 LINE L2 3140 3268 -4 775 233 30 99 chr1 18507971 18508303 -263685361 + L2 LINE L2 2899 3204 -109 2183 132 0 0 chr1 18508303 18508607 -263685057 + AluSx SINE Alu 1 304 -8 775 233 30 99 chr1 18508607 18508647 -263685017 + L2 LINE L2 3204 3245 -68 2274 118 16 0 chr1 18508677 18508982 -263684682 + AluSx SINE Alu 1 310 -2 834 234 77 89 chr1 18508983 18509479 -263684185 + MER34 LTR ERV1 53 542 0 465 325 46 0 chr1 18509481 18509675 -263683989 - MIR SINE MIR -1 261 59 193 324 29 0 chr1 18509702 18509770 -263683894 + L2 LINE L2 3244 3313 0 276 283 75 17 chr1 18509786 18509906 -263683758 + L1ME4a LINE L1 5977 6103 -18 454 272 113 41 chr1 18511023 18511218 -263682446 + MIR SINE MIR 9 217 -45 228 182 0 0 chr1 18511662 18511706 -263681958 + L2 LINE L2 2919 2962 -310 217 209 0 0 chr1 18511726 18511769 -263681895 - L2 LINE L2 -311 2961 2919 862 157 138 0 chr1 18512342 18512501 -263681163 + MER63B DNA MER1_type 1 181 -255 2487 121 3 3 chr1 18512537 18512892 -263680772 + THE1B LTR MaLR 1 355 -9 232 192 135 0 chr1 18512925 18513029 -263680635 + MER63B DNA MER1_type 190 307 -127 2078 145 10 0 chr1 18513193 18513497 -263680167 + AluSx SINE Alu 1 307 -5 1926 139 10 7 chr1 18513497 18513791 -263679873 + AluSq SINE Alu 1 295 -18 966 157 50 0 chr1 18513795 18513954 -263679710 + AluSg/x SINE Alu 136 302 -8 1599 171 72 16 chr1 18513954 18514275 -263679389 - LTR8A LTR ERV1 -345 382 44 450 0 0 0 chr1 18514281 18514331 -263679333 + (TTTTG)n Simple_repeat Simple_repeat 1 50 0 2157 94 14 0 chr1 18514332 18514609 -263679055 - AluSp SINE Alu -32 281 1 883 153 0 8 chr1 18514611 18514742 -263678922 - AluJo SINE Alu -178 134 5 2545 76 0 0 chr1 18514750 18515051 -263678613 - AluSp SINE Alu -12 301 1 600 220 31 122 chr1 18515072 18515358 -263678306 + MER39 LTR ERV1 76 532 -175 1847 179 3 3 chr1 18515379 18515691 -263677973 - AluSx SINE Alu 0 312 1 2072 143 3 3 chr1 18515696 18515997 -263677667 - AluSx SINE Alu -11 301 1 3414 132 16 44 chr1 18516017 18516507 -263677157 - L1PB3 LINE L1 -3 6151 5649 1718 122 107 19 chr1 18516507 18516777 -263676887 - AluSx SINE Alu -18 294 1 3414 132 16 44 chr1 18516777 18516850 -263676814 - L1PB3 LINE L1 -505 5649 5604 3349 74 11 9 chr1 18516850 18517307 -263676357 + LTR22A LTR ERVK 1 458 0 3414 132 16 44 chr1 18517307 18517354 -263676310 - L1PB3 LINE L1 -550 5604 5557 3380 142 14 12 chr1 18517405 18518008 -263675656 - L1PB3 LINE L1 -599 5555 4948 2370 108 3 0 chr1 18518008 18518314 -263675350 - AluSx SINE Alu -5 307 1 3380 142 14 12 chr1 18518314 18518624 -263675040 - L1PB3 LINE L1 -1206 4948 4640 1362 113 0 0 chr1 18518624 18518798 -263674866 - AluSc SINE Alu -4 305 129 2405 92 0 0 chr1 18518798 18519102 -263674562 - AluY SINE Alu -7 304 1 1362 113 0 0 chr1 18519102 18519113 -263674551 - AluSc SINE Alu -179 130 120 1890 206 10 48 chr1 18519113 18519296 -263674368 - L1PB3 LINE L1 -1516 4630 4441 2249 124 0 16 chr1 18519296 18519610 -263674054 - AluSx SINE Alu -3 309 1 1890 206 10 48 chr1 18519610 18519651 -263674013 - L1PB3 LINE L1 -1705 4441 4400 809 119 8 22 chr1 18519651 18519785 -263673879 + FLAM_C SINE Alu 1 132 -1 1890 206 10 48 chr1 18519785 18520078 -263673586 - L1PB3 LINE L1 -1746 4400 4132 549 233 27 7 chr1 18520078 18520224 -263673440 + MER39 LTR ERV1 536 684 -23 689 136 11 164 chr1 18520232 18520409 -263673255 + AluSg/x SINE Alu 134 283 -29 302 0 26 0 chr1 18520409 18520447 -263673217 + (CA)n Simple_repeat Simple_repeat 2 40 0 2477 91 0 0 chr1 18520645 18520953 -263672711 - AluSg SINE Alu -2 308 1 247 325 60 0 chr1 18521041 18521158 -263672506 - MIR SINE MIR -66 196 73 930 247 116 45 chr1 18521824 18522205 -263671459 + MLT1H LTR MaLR 140 547 -2 2577 65 0 3 chr1 18522259 18522567 -263671097 - AluY SINE Alu -4 307 1 1232 99 6 0 chr1 18522827 18522988 -263670676 - AluSx SINE Alu -150 162 1 620 117 0 109 chr1 18522990 18523127 -263670537 - MER34B LTR ERV1 -433 132 11 2326 93 0 7 chr1 18523276 18523576 -263670088 - AluSp SINE Alu -15 298 1 2169 82 22 87 chr1 18523615 18523836 -263669828 + THE1C LTR MaLR 1 235 -140 2229 78 0 62 chr1 18523836 18524142 -263669522 - AluSg SINE Alu -23 287 1 2040 87 8 4 chr1 18524142 18524407 -263669257 - AluSg SINE Alu -16 294 29 2343 88 3 3 chr1 18524415 18524709 -263668955 - AluSp SINE Alu -19 294 1 2169 82 22 87 chr1 18524709 18524878 -263668786 + THE1C LTR MaLR 241 375 0 1886 162 23 13 chr1 18525013 18525187 -263668477 - AluJb SINE Alu -5 307 127 2193 113 3 0 chr1 18525187 18525478 -263668186 - AluSc SINE Alu -17 292 1 1886 162 23 13 chr1 18525478 18525605 -263668059 - AluJb SINE Alu -185 127 3 886 274 142 50 chr1 18525692 18526117 -263667547 - L2 LINE L2 -55 3217 2832 1862 109 7 86 chr1 18526117 18526265 -263667399 - AluSg SINE Alu -30 280 122 2521 74 0 3 chr1 18526265 18526563 -263667101 - AluSc SINE Alu -12 297 1 1862 109 7 86 chr1 18526563 18526574 -263667090 - AluSg SINE Alu -188 122 112 2643 55 0 3 chr1 18526574 18526882 -263666782 - AluY SINE Alu -4 307 1 1862 109 7 86 chr1 18526882 18527025 -263666639 - AluSg SINE Alu -198 112 1 886 274 142 50 chr1 18527025 18527485 -263666179 - L2 LINE L2 -440 2832 2229 2346 105 0 13 chr1 18527486 18527799 -263665865 + AluSc SINE Alu 1 309 0 212 278 0 102 chr1 18527874 18527982 -263665682 - MIR3 SINE MIR -14 194 98 1655 161 39 36 chr1 18527994 18528330 -263665334 + MER1B DNA MER1_type 1 337 0 1585 162 86 22 chr1 18528334 18528648 -263665016 + MLT1A1 LTR MaLR 14 347 -18 973 186 12 0 chr1 18528772 18528939 -263664725 - AluJb SINE Alu -8 304 136 2058 128 0 32 chr1 18528941 18529253 -263664411 - AluSx SINE Alu -10 302 1 2461 93 0 0 chr1 18529253 18529555 -263664109 - AluSq SINE Alu -11 302 1 802 126 102 47 chr1 18529556 18529771 -263663893 - LTR8A LTR ERV1 -145 582 356 394 117 0 0 chr1 18529773 18529833 -263663831 + AluS SINE Alu 1 60 -248 460 223 96 6 chr1 18529942 18530151 -263663513 + MER34B LTR ERV1 304 517 -25 2332 106 3 0 chr1 18530230 18530533 -263663131 - AluSq SINE Alu -9 304 1 253 298 43 11 chr1 18530550 18530644 -263663020 + MIR SINE MIR 86 182 -80 4198 128 40 40 chr1 18530646 18530663 -263663001 + MER4E LTR ERV1 1 17 -762 2599 60 0 0 chr1 18530663 18530965 -263662699 - AluY SINE Alu -9 302 1 4198 128 40 40 chr1 18530965 18531373 -263662291 + MER4E LTR ERV1 17 429 -350 2204 102 34 0 chr1 18531373 18531668 -263661996 - AluSp SINE Alu -6 307 3 4198 128 40 40 chr1 18531668 18531998 -263661666 + MER4E LTR ERV1 428 757 -22 789 276 29 34 chr1 18532383 18532622 -263661042 - MIR SINE MIR -10 252 15 437 260 90 67 chr1 18532657 18532880 -263660784 - MIR SINE MIR 0 262 35 447 318 47 7 chr1 18532888 18533036 -263660628 - MIR3 SINE MIR -15 193 40 1171 220 16 44 chr1 18533606 18533970 -263659694 + L1MCa LINE L1 891 1244 -5182 815 253 80 37 chr1 18533967 18534008 -263659656 + L1M4 LINE L1 4578 4616 -1530 * 207 0 0 0 chr1 18534008 18534031 -263659633 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2192 105 4 0 chr1 18534034 18534311 -263659353 - AluSp SINE Alu -35 278 1 815 253 80 37 chr1 18534311 18534973 -263658691 + L1M4 LINE L1 4617 5398 -748 546 299 128 16 chr1 18535071 18535322 -263658342 - L1MC/D LINE L1 -2142 5666 5388 288 0 0 0 chr1 18535429 18535461 -263658203 + (CA)n Simple_repeat Simple_repeat 2 33 0 257 245 11 64 chr1 18535516 18535610 -263658054 - L1ME3A LINE L1 -113 6057 5969 300 295 11 0 chr1 18535692 18535787 -263657877 - L1ME3A LINE L1 -239 5931 5836 2039 131 20 17 chr1 18535826 18536124 -263657540 + AluJb SINE Alu 1 299 -13 227 310 0 14 chr1 18536334 18536405 -263657259 - MIR SINE MIR -170 92 23 191 241 0 56 chr1 18536516 18536570 -263657094 - L2 LINE L2 -212 3060 3010 1019 222 68 0 chr1 18537087 18537294 -263656370 - MER58A DNA MER1_type 0 224 4 189 257 194 7 chr1 18537372 18537516 -263656148 - L2 LINE L2 -181 3091 2921 266 233 233 0 chr1 18538205 18538321 -263655343 - MIR SINE MIR -8 254 112 235 268 274 7 chr1 18539331 18539484 -263654180 - L1MC5 LINE L1 -49 7912 7719 2279 113 0 0 chr1 18539598 18539900 -263653764 - AluY SINE Alu -9 302 1 2003 161 0 0 chr1 18539980 18540279 -263653385 - AluJb SINE Alu -13 299 1 288 335 76 0 chr1 18540356 18540541 -263653123 - L1MC4a LINE L1 -1905 5903 5705 228 234 0 62 chr1 18540571 18540635 -263653029 + L2 LINE L2 3254 3313 0 2208 128 3 3 chr1 18540701 18541013 -263652651 - AluSx SINE Alu 0 312 1 303 215 108 0 chr1 18541021 18541114 -263652550 - L1MC4a LINE L1 -460 5661 5559 926 228 4 22 chr1 18541539 18541767 -263651897 + AluJb SINE Alu 79 302 -10 184 190 0 103 chr1 18541897 18541955 -263651709 - MIR SINE MIR -138 70 19 203 250 76 22 chr1 18542458 18542550 -263651114 - L2 LINE L2 -8 3264 3168 348 239 14 6 chr1 18542562 18542697 -263650967 + MER20 DNA MER1_type 1 219 0 1208 144 62 14 chr1 18542747 18542955 -263650709 + AluJb SINE Alu 87 304 -8 216 298 19 58 chr1 18543008 18543112 -263650552 - L2 LINE L2 -173 3099 3000 256 255 10 59 chr1 18543475 18543577 -263650087 + MIR SINE MIR 16 112 -150 27 0 0 0 chr1 18543577 18543604 -263650060 + AT_rich Low_complexity Low_complexity 1 27 0 1894 129 39 3 chr1 18543607 18543893 -263649771 - AluJo SINE Alu -14 298 3 473 278 15 0 chr1 18543895 18544028 -263649636 + MIR SINE MIR 92 226 -36 992 138 32 27 chr1 18544664 18544852 -263648812 - MER53 DNA DNA 0 189 1 436 261 121 24 chr1 18544865 18545030 -263648634 + MIR SINE MIR 2 182 -80 391 229 229 0 chr1 18546073 18546195 -263647469 - MIR3 SINE MIR -22 186 37 2474 78 3 3 chr1 18546250 18546557 -263647107 + AluY SINE Alu 5 311 0 2307 113 0 6 chr1 18547142 18547453 -263646211 + AluSx SINE Alu 1 309 -3 2205 262 128 22 chr1 18548206 18548282 -263645382 + MER45C DNA AcHobo 8 75 -1506 2548 60 3 3 chr1 18548282 18548584 -263645080 - AluSp SINE Alu -11 302 1 2205 262 128 22 chr1 18548584 18549317 -263644347 + MER45C DNA AcHobo 75 903 -50 1935 159 24 3 chr1 18549322 18549617 -263644047 - AluJb SINE Alu -11 301 1 300 309 41 3 chr1 18550353 18550558 -263643106 - MIR SINE MIR -10 252 38 679 224 45 30 chr1 18550653 18550854 -263642810 + MIR SINE MIR 46 249 -13 212 245 19 0 chr1 18552447 18552500 -263641164 - L2 LINE L2 -214 3058 3005 2379 91 3 25 chr1 18552524 18552843 -263640821 - AluSx SINE Alu 0 312 1 458 235 112 18 chr1 18552843 18553013 -263640651 - MER5A DNA MER1_type -3 186 1 227 337 0 0 chr1 18553376 18553459 -263640205 + CT-rich Low_complexity Low_complexity 1 83 0 634 176 0 8 chr1 18556287 18556406 -263637258 - MLT1D LTR MaLR 0 505 388 1107 154 0 0 chr1 18556424 18556580 -263637084 + FRAM SINE Alu 1 154 -22 2167 151 41 44 chr1 18556582 18556733 -263636931 - LTR32 LTR ERVL -27 444 294 2323 95 0 0 chr1 18556733 18557027 -263636637 + AluSg SINE Alu 1 294 -16 2167 151 41 44 chr1 18557027 18557311 -263636353 - LTR32 LTR ERVL -177 294 10 1398 206 63 50 chr1 18557307 18557705 -263635959 - MLT1D LTR MaLR -102 403 1 * 474 275 18 54 chr1 18558225 18558392 -263635272 + MIR SINE MIR 102 262 0 537 289 26 30 chr1 18558884 18559085 -263634579 - MIR SINE MIR -32 230 31 406 240 164 41 chr1 18559089 18559235 -263634429 - MER5B DNA MER1_type 0 178 15 1944 108 4 22 chr1 18559241 18559345 -263634319 + AluSx SINE Alu 32 136 -176 2375 86 0 3 chr1 18559345 18559636 -263634028 + AluSc SINE Alu 1 290 -19 1944 108 4 22 chr1 18559636 18559808 -263633856 + AluSx SINE Alu 136 303 -9 2475 92 0 0 chr1 18560127 18560431 -263633233 + AluY SINE Alu 1 304 -7 387 252 25 157 chr1 18560674 18560776 -263632888 - L1ME3A LINE L1 -285 5885 5771 1981 161 7 0 chr1 18560776 18561075 -263632589 - AluJb SINE Alu -11 301 1 387 252 25 157 chr1 18561075 18561258 -263632406 - L1ME3A LINE L1 -399 5771 5638 975 236 30 93 chr1 18561338 18561736 -263631928 - MLT1J1 LTR MaLR -11 435 63 838 275 28 14 chr1 18562398 18562616 -263631048 + MIR SINE MIR 8 228 -34 2200 114 0 3 chr1 18562817 18563116 -263630548 + AluSc SINE Alu 3 300 -9 1598 109 5 0 chr1 18563949 18564159 -263629505 + AluSq SINE Alu 1 211 -102 198 0 0 0 chr1 18564172 18564194 -263629470 + (TAA)n Simple_repeat Simple_repeat 2 23 0 279 136 0 0 chr1 18564435 18564479 -263629185 - U2 snRNA snRNA -141 47 4 337 205 304 0 chr1 18564517 18564629 -263629035 + MIR SINE MIR 114 259 -3 318 343 10 0 chr1 18564722 18564821 -263628843 - L2 LINE L2 -31 3282 3183 1169 237 146 52 chr1 18564934 18565253 -263628411 + L1ME3A LINE L1 3670 3958 -2188 2169 137 0 0 chr1 18565253 18565546 -263628118 + AluSx SINE Alu 1 293 -19 987 161 16 42 chr1 18565554 18565747 -263627917 + MER5A DNA MER1_type 2 189 0 1169 237 146 52 chr1 18565747 18566003 -263627661 + L1ME3A LINE L1 3964 4195 -1951 1693 186 3 36 chr1 18566003 18566309 -263627355 - AluJo SINE Alu -16 296 1 1169 237 146 52 chr1 18566309 18566581 -263627083 + L1ME3A LINE L1 4195 4607 -1539 571 102 0 97 chr1 18566629 18566815 -263626849 + (GGGGA)n Simple_repeat Simple_repeat 4 171 0 557 270 49 0 chr1 18566815 18567000 -263626664 + L1ME3A LINE L1 4624 4817 -1329 313 262 0 79 chr1 18567010 18567174 -263626490 - L1ME3A LINE L1 -847 5299 5149 31 26 0 0 chr1 18567174 18567212 -263626452 + AT_rich Low_complexity Low_complexity 1 38 0 1130 268 64 5 chr1 18567307 18567740 -263625924 + L1ME3A LINE L1 5352 5815 -355 386 159 0 0 chr1 18567761 18567824 -263625840 - LTR3b LTR ERVK 0 500 438 1690 207 42 53 chr1 18567824 18568258 -263625406 - LTR3 LTR ERVK 0 429 1 501 164 45 0 chr1 18568258 18568368 -263625296 + L1ME3A LINE L1 5837 5951 -219 1521 166 21 32 chr1 18568392 18568676 -263624988 + AluJo SINE Alu 26 306 -6 2507 51 0 7 chr1 18568772 18569067 -263624597 + AluY SINE Alu 11 303 -8 1576 214 84 3 chr1 18569781 18570173 -263623491 + LTR16C LTR ERVL 66 489 -2 236 338 35 50 chr1 18570189 18570361 -263623303 + MIR SINE MIR 23 191 -63 1798 174 22 42 chr1 18570401 18570802 -263622862 + MLT2D LTR ERVL 2 477 -43 492 48 0 0 chr1 18570802 18570865 -263622799 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 1798 174 22 42 chr1 18570865 18570890 -263622774 + MLT2D LTR ERVL 477 501 -19 218 250 29 59 chr1 18570890 18570958 -263622706 + L2 LINE L2 3203 3268 -4 546 278 73 21 chr1 18571011 18571190 -263622474 + MIR SINE MIR 2 193 -69 2373 88 3 0 chr1 18571190 18571485 -263622179 + AluSx SINE Alu 1 296 -16 546 278 73 21 chr1 18571485 18571496 -263622168 + MIR SINE MIR 193 202 -60 1091 140 0 0 chr1 18573047 18573197 -263620467 + AluSq SINE Alu 4 153 -160 496 153 0 20 chr1 18573197 18573295 -263620369 + AluSg/x SINE Alu 214 309 0 1540 174 48 14 chr1 18573305 18573372 -263620292 + L1MA9 LINE L1 5716 5779 -533 203 0 0 36 chr1 18573372 18573400 -263620264 + (CA)n Simple_repeat Simple_repeat 2 28 0 1540 174 48 14 chr1 18573400 18573689 -263619975 + L1MA9 LINE L1 5779 6084 -228 940 209 0 0 chr1 18573716 18573917 -263619747 + AluSg/x SINE Alu 107 307 -3 1801 75 0 0 chr1 18574552 18574766 -263618898 + AluSq SINE Alu 92 305 -8 909 142 0 0 chr1 18574766 18574893 -263618771 + AluSg/x SINE Alu 134 260 -52 2692 44 0 63 chr1 18574928 18575293 -263618371 + LTR14A LTR ERVK 3 344 0 1773 129 20 17 chr1 18575299 18575593 -263618071 + MSTA LTR MaLR 134 428 0 775 202 14 62 chr1 18575594 18575802 -263617862 + L1M4 LINE L1 4724 4921 -1225 525 222 32 48 chr1 18575831 18575957 -263617707 - L2 LINE L2 -2 3311 3188 1992 109 0 0 chr1 18576447 18576703 -263616961 - AluSx SINE Alu -1 311 56 397 281 97 77 chr1 18576863 18577059 -263616605 + MIR SINE MIR 4 203 -59 229 201 253 71 chr1 18577134 18577288 -263616376 + MIR SINE MIR 80 261 -1 250 259 0 0 chr1 18577331 18577389 -263616275 + L2 LINE L2 3251 3308 -5 255 31 0 0 chr1 18578379 18578411 -263615253 + (TG)n Simple_repeat Simple_repeat 2 33 0 2111 242 164 42 chr1 18578458 18579548 -263614116 + L2 LINE L2 2074 3312 -1 625 279 23 6 chr1 18579633 18579805 -263613859 + MIR3 SINE MIR 15 189 -19 347 361 24 6 chr1 18579953 18580119 -263613545 + MIR SINE MIR 15 183 -79 413 219 42 85 chr1 18580475 18580675 -263612989 + MIR SINE MIR 21 210 -51 589 218 148 0 chr1 18580708 18580850 -263612814 + MIR SINE MIR 30 192 -70 233 301 96 0 chr1 18580850 18580933 -263612731 + MIR SINE MIR 143 233 -29 320 293 20 20 chr1 18581811 18581910 -263611754 - MIR SINE MIR -77 131 33 475 277 144 5 chr1 18582007 18582202 -263611462 + MIR SINE MIR 41 262 0 225 228 70 18 chr1 18582199 18582256 -263611408 - L2 LINE L2 0 3272 3213 * 2929 134 24 24 chr1 18582308 18582801 -263610863 + LTR15 LTR ERV1 1 493 0 779 233 17 22 chr1 18583365 18583545 -263610119 - MIR SINE MIR -56 206 28 674 140 0 0 chr1 18583760 18583860 -263609804 + AluSg/x SINE Alu 199 298 -11 2052 132 0 33 chr1 18583895 18584037 -263609627 + AluSx SINE Alu 1 146 -166 2323 89 0 3 chr1 18584037 18584330 -263609334 + AluSc SINE Alu 5 296 -13 2052 132 0 33 chr1 18584330 18584491 -263609173 + AluSx SINE Alu 146 294 -18 2450 66 0 10 chr1 18584736 18585041 -263608623 - AluY SINE Alu -9 302 1 417 297 39 0 chr1 18585080 18585208 -263608456 + MIR SINE MIR 87 219 -43 575 205 48 24 chr1 18585223 18585389 -263608275 - MER4C LTR ERV1 0 465 296 2513 86 0 0 chr1 18585394 18585697 -263607967 + AluSq SINE Alu 1 303 -10 1884 97 13 203 chr1 18585734 18586127 -263607537 - MER4A LTR ERV1 -238 426 -40 2314 102 0 3 chr1 18586127 18586432 -263607232 + AluSc SINE Alu 1 304 -5 2355 107 7 3 chr1 18586435 18586743 -263606921 + AluSx SINE Alu 1 309 -3 1884 97 13 203 chr1 18586743 18586871 -263606793 - MER4A LTR ERV1 -512 152 1 199 216 206 41 chr1 18587165 18587262 -263606402 + MIR SINE MIR 22 134 -128 420 283 62 23 chr1 18587729 18587906 -263605758 - MIR SINE MIR -12 250 67 283 200 29 0 chr1 18588444 18588514 -263605150 + (TGAG)n Simple_repeat Simple_repeat 3 74 0 252 211 0 0 chr1 18588525 18588577 -263605087 + L2 LINE L2 3220 3271 -1 2196 132 0 0 chr1 18589328 18589623 -263604041 + AluSx SINE Alu 1 295 -17 2434 53 0 3 chr1 18589624 18589968 -263603696 + AluY SINE Alu 1 343 0 274 210 91 119 chr1 18590092 18590235 -263603429 + MIR SINE MIR 117 255 -7 328 280 13 0 chr1 18590244 18590319 -263603345 + MIR SINE MIR 109 184 -78 822 167 0 0 chr1 18590322 18590442 -263603222 - FLAM_C SINE Alu -23 120 1 2245 78 0 11 chr1 18590504 18590785 -263602879 - AluSg SINE Alu -32 278 1 1142 150 5 60 chr1 18590891 18590956 -263602708 - MER5A DNA MER1_type 0 189 122 1764 157 48 10 chr1 18590956 18591250 -263602414 + AluJo SINE Alu 2 306 -6 1142 150 5 60 chr1 18591250 18591384 -263602280 - MER5A DNA MER1_type -67 122 1 348 260 122 0 chr1 18591489 18591612 -263602052 + MIR SINE MIR 60 197 -65 2565 62 0 10 chr1 18591898 18592204 -263601460 - AluY SINE Alu -8 303 1 704 142 117 0 chr1 18592204 18592324 -263601340 - FLAM_C SINE Alu -8 135 2 1309 178 17 26 chr1 18592505 18592736 -263600928 + AluJb SINE Alu 6 234 -78 2725 131 59 27 chr1 18592775 18592792 -263600872 - MLT1D LTR MaLR 0 505 490 2310 159 15 15 chr1 18592792 18593195 -263600469 - MER57A LTR ERV1 0 403 1 2725 131 59 27 chr1 18593195 18593496 -263600168 - MLT1D LTR MaLR -15 490 163 4711 105 9 0 chr1 18593496 18594125 -263599539 - MER41B LTR ERV1 0 635 1 2725 131 59 27 chr1 18594125 18594294 -263599370 - MLT1D LTR MaLR -342 163 1 651 227 67 0 chr1 18594608 18594758 -263598906 + MIR SINE MIR 77 236 -26 454 229 169 30 chr1 18594953 18595119 -263598545 - MER4C LTR ERV1 0 465 277 1799 92 14 134 chr1 18595135 18595422 -263598242 - MER4A LTR ERV1 -239 425 261 2260 106 0 20 chr1 18595422 18595724 -263597940 + AluSx SINE Alu 1 296 -16 1799 92 14 134 chr1 18595724 18595958 -263597706 - MER4A LTR ERV1 -403 261 1 275 191 16 0 chr1 18596002 18596065 -263597599 + CT-rich Low_complexity Low_complexity 4 67 0 2108 223 79 39 chr1 18596097 18596667 -263596997 - MLT1E LTR MaLR 0 593 1 1672 206 20 0 chr1 18596769 18597075 -263596589 + AluJb SINE Alu 1 312 0 462 286 92 24 chr1 18597164 18597692 -263595972 - L1ME LINE L1 -372 5867 5222 823 138 8 39 chr1 18597718 18597848 -263595816 - FLAM_C SINE Alu -17 126 1 727 271 78 98 chr1 18597924 18598931 -263594733 - L1ME LINE L1 -1078 5137 4151 2048 142 17 0 chr1 18598931 18599220 -263594444 - AluSx SINE Alu -18 294 1 727 271 78 98 chr1 18599220 18599307 -263594357 - L1ME LINE L1 -2064 4151 4064 1276 246 102 68 chr1 18599368 18600121 -263593543 - L1MEc LINE L1 -2882 3333 2608 1726 161 30 33 chr1 18600121 18600420 -263593244 - AluJb SINE Alu -14 298 1 1276 246 102 68 chr1 18600420 18600745 -263592919 - L1MEc LINE L1 -3607 2608 2242 2016 131 0 20 chr1 18600745 18601042 -263592622 - AluSx SINE Alu -1 311 21 1276 246 102 68 chr1 18601042 18601139 -263592525 - L1MEc LINE L1 -3973 2242 2150 1751 173 0 32 chr1 18601228 18601540 -263592124 - AluJo SINE Alu -10 302 1 2050 154 0 3 chr1 18601580 18601879 -263591785 + AluJo SINE Alu 1 298 -14 206 220 9 37 chr1 18602191 18602300 -263591364 + (TTATA)n Simple_repeat Simple_repeat 3 108 0 287 294 0 0 chr1 18602366 18602434 -263591230 - Tigger2a DNA MER2_type 0 434 367 973 66 16 0 chr1 18602434 18602556 -263591108 + AluY SINE Alu 174 297 -14 2302 92 59 3 chr1 18602560 18602918 -263590746 - Tigger2a DNA MER2_type -55 379 2 283 333 26 20 chr1 18602918 18603113 -263590551 - HAL1 LINE L1 -937 1570 1375 387 235 91 15 chr1 18603137 18603269 -263590395 - L1MEc LINE L1 -5975 230 89 2102 198 59 71 chr1 18603544 18604105 -263589559 - MLT2B3 LTR ERVL 0 554 1 481 288 42 63 chr1 18604574 18604765 -263588899 - L2 LINE L2 -5 3308 3122 1276 223 130 69 chr1 18604806 18604852 -263588812 - MLT1D LTR MaLR 0 505 463 2472 79 3 0 chr1 18604852 18605155 -263588509 + AluSq SINE Alu 1 304 -9 1276 223 130 69 chr1 18605155 18605466 -263588198 - MLT1D LTR MaLR -42 463 109 2223 90 0 13 chr1 18605466 18605766 -263587898 - AluSx SINE Alu -16 296 1 1276 223 130 69 chr1 18605766 18605883 -263587781 - MLT1D LTR MaLR -396 109 1 370 345 18 23 chr1 18606282 18606453 -263587211 - L2 LINE L2 -556 2758 2589 283 289 102 53 chr1 18606824 18607128 -263586536 + L2 LINE L2 2952 3270 -2 2171 105 0 0 chr1 18607524 18607819 -263585845 - AluSx SINE Alu -17 295 1 276 295 32 13 chr1 18607895 18608051 -263585613 + MER113 DNA MER1_type? 2 160 -361 206 176 29 59 chr1 18608051 18608076 -263585588 + (TA)n Simple_repeat Simple_repeat 1 25 -41 1810 146 28 3 chr1 18608076 18608364 -263585300 + AluJo SINE Alu 1 295 -17 206 176 29 59 chr1 18608364 18608406 -263585258 + (TA)n Simple_repeat Simple_repeat 25 66 0 776 182 99 17 chr1 18608472 18608653 -263585011 - MIR SINE MIR -21 241 46 1970 102 29 0 chr1 18610342 18610662 -263583002 - AluSx SINE Alu 0 328 1 2212 102 3 0 chr1 18610852 18611156 -263582508 + AluSc SINE Alu 1 305 -4 323 259 35 63 chr1 18611497 18611640 -263582024 - MIR3 SINE MIR -67 141 3 456 301 169 0 chr1 18611737 18611903 -263581761 - MIR SINE MIR -27 235 42 482 293 39 33 chr1 18612173 18612354 -263581310 - MIR SINE MIR 0 262 81 197 322 0 0 chr1 18612521 18612580 -263581084 - L2 LINE L2 0 3272 3214 285 266 124 18 chr1 18613102 18613215 -263580449 - L2 LINE L2 -14 3299 3175 285 98 0 0 chr1 18613255 18613296 -263580368 + (CA)n Simple_repeat Simple_repeat 1 41 0 1090 268 50 17 chr1 18613419 18613946 -263579718 - L2 LINE L2 -36 3277 2736 1932 142 30 0 chr1 18614007 18614310 -263579354 - AluSx SINE Alu 0 312 1 2157 103 0 7 chr1 18614314 18614615 -263579049 - AluSc SINE Alu -10 299 1 209 309 117 0 chr1 18614803 18614897 -263578767 + L2 LINE L2 3168 3272 0 208 326 74 79 chr1 18615832 18615909 -263577755 + MER5A DNA MER1_type 1 77 -112 2134 105 3 3 chr1 18615909 18616204 -263577460 + AluSx SINE Alu 1 295 -17 1623 99 0 5 chr1 18616204 18616426 -263577238 + AluSg/x SINE Alu 84 305 -7 278 25 0 25 chr1 18616430 18616470 -263577194 + (TTAAA)n Simple_repeat Simple_repeat 3 41 0 208 326 74 79 chr1 18616470 18616576 -263577088 + MER5A DNA MER1_type 79 189 0 191 294 90 40 chr1 18616660 18616762 -263576902 + MIR SINE MIR 23 118 -144 2405 101 32 9 chr1 18616762 18617109 -263576555 + THE1A LTR MaLR 1 355 0 12642 77 5 2 chr1 18617109 18618685 -263574979 + THE1A-int LTR MaLR 1 1580 0 2458 81 32 9 chr1 18618685 18619032 -263574632 + THE1A LTR MaLR 1 355 0 191 294 90 40 chr1 18619032 18619109 -263574555 + MIR SINE MIR 117 210 -52 2078 103 34 0 chr1 18620161 18620453 -263573211 - AluSp SINE Alu -11 302 1 369 221 13 0 chr1 18620475 18620552 -263573112 + MER116 DNA Mariner 3 80 0 396 301 52 0 chr1 18621820 18621973 -263571691 - MIR SINE MIR 0 262 102 2165 119 7 0 chr1 18622639 18622949 -263570715 + AluSx SINE Alu 1 312 0 659 296 33 0 chr1 18623016 18623256 -263570408 + L2 LINE L2 2807 3054 -259 784 272 64 11 chr1 18623474 18623757 -263569907 + MER113 DNA MER1_type? 138 435 -86 1094 244 15 112 chr1 18623926 18624122 -263569542 - L2 LINE L2 -3 3310 3097 1782 170 3 35 chr1 18624122 18624439 -263569225 + AluJo SINE Alu 2 308 -4 1094 244 15 112 chr1 18624439 18624525 -263569139 - L2 LINE L2 -216 3097 3004 1673 156 3 61 chr1 18624525 18624851 -263568813 + AluJb SINE Alu 1 307 -5 1094 244 15 112 chr1 18624851 18625105 -263568559 - L2 LINE L2 -309 3004 2825 390 262 14 34 chr1 18625152 18625456 -263568208 + G-rich Low_complexity Low_complexity 1 297 0 586 287 244 32 chr1 18625472 18626371 -263567293 - L2 LINE L2 -419 2895 1807 1225 150 21 47 chr1 18626398 18626632 -263567032 + AluJo SINE Alu 1 228 -84 910 176 104 24 chr1 18626814 18627174 -263566490 + MLT1D LTR MaLR 2 446 -59 1784 127 23 33 chr1 18627174 18627473 -263566191 + AluSx SINE Alu 1 296 -16 225 309 29 0 chr1 18628042 18628110 -263565554 + MIR SINE MIR 8 77 -185 742 257 228 5 chr1 18628112 18628485 -263565179 - L2 LINE L2 -2 3311 2856 2080 95 46 0 chr1 18628486 18628771 -263564893 + AluSx SINE Alu 1 298 -14 279 248 133 29 chr1 18628806 18628911 -263564753 - MIR SINE MIR -122 140 25 541 278 122 50 chr1 18629750 18630128 -263563536 - L2 LINE L2 -2 3270 2866 2080 116 0 3 chr1 18630390 18630683 -263562981 - AluSg SINE Alu -18 292 1 2277 95 0 0 chr1 18630867 18631172 -263562492 + AluSg SINE Alu 1 305 -5 2243 104 0 0 chr1 18631182 18631479 -263562185 + AluSx SINE Alu 1 297 -15 26 23 0 23 chr1 18631485 18631502 -263562162 + AT_rich Low_complexity Low_complexity 1 17 -26 2485 39 7 3 chr1 18631502 18631812 -263561852 + AluY SINE Alu 1 311 0 26 23 0 23 chr1 18631812 18631838 -263561826 + AT_rich Low_complexity Low_complexity 17 43 0 257 284 87 24 chr1 18631848 18631975 -263561689 - MIR SINE MIR -9 253 119 203 250 13 26 chr1 18632417 18632493 -263561171 + C-rich Low_complexity Low_complexity 3 77 0 4218 145 49 20 chr1 18632747 18633224 -263560440 - LTR62 LTR ERVK -2 717 212 1973 148 0 3 chr1 18633224 18633527 -263560137 + AluSx SINE Alu 1 302 -10 4218 145 49 20 chr1 18633527 18633746 -263559918 - LTR62 LTR ERVK -507 212 1 182 255 0 0 chr1 18633997 18634048 -263559616 - L2 LINE L2 -234 3079 3029 493 284 142 5 chr1 18634781 18634971 -263558693 - MIR SINE MIR -19 243 28 297 267 0 27 chr1 18635075 18635150 -263558514 - L2 LINE L2 0 3313 3241 221 322 53 33 chr1 18635140 18635292 -263558372 - L2 LINE L2 -181 3091 2937 * 1542 194 23 37 chr1 18635293 18635312 -263558352 + L1PB4 LINE L1 5811 5829 -327 1702 122 93 0 chr1 18635312 18635591 -263558073 + AluJb SINE Alu 1 305 -7 1542 194 23 37 chr1 18635591 18635922 -263557742 + L1PB4 LINE L1 5829 6156 0 322 309 36 9 chr1 18635923 18636033 -263557631 + MIR SINE MIR 34 146 -62 2073 108 34 0 chr1 18636036 18636332 -263557332 - AluSx SINE Alu -5 307 2 1945 116 0 40 chr1 18636334 18636637 -263557027 - AluJb SINE Alu -19 293 3 536 197 41 0 chr1 18637784 18637906 -263555758 + L1MB2 LINE L1 4718 4844 -1302 * 2458 103 210 138 chr1 18637896 18638217 -263555447 + L1MB2 LINE L1 5334 5631 -540 480 221 0 0 chr1 18638217 18638303 -263555361 - FLAM SINE Alu -12 131 46 2458 103 210 138 chr1 18638303 18638341 -263555323 + L1MB2 LINE L1 5631 5665 -506 1443 200 41 10 chr1 18638341 18638462 -263555202 + AluJo SINE Alu 1 117 -195 209 56 0 28 chr1 18638462 18638498 -263555166 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1443 200 41 10 chr1 18638498 18638666 -263554998 + AluJo SINE Alu 117 299 -13 2458 103 210 138 chr1 18638666 18638802 -263554862 + L1MB2 LINE L1 5665 5790 -381 1975 137 0 7 chr1 18638802 18639101 -263554563 + AluSx SINE Alu 1 297 -15 2458 103 210 138 chr1 18639101 18639262 -263554402 + L1MB2 LINE L1 5790 6130 -41 2204 100 3 0 chr1 18639262 18639561 -263554103 + AluSx SINE Alu 1 300 -12 1406 222 124 46 chr1 18640094 18640553 -263553111 - MLT1D LTR MaLR -6 499 5 716 293 111 22 chr1 18640717 18641130 -263552534 - LTR16A LTR ERVL 0 450 1 1663 174 72 20 chr1 18641272 18641453 -263552211 - LTR38B LTR ERV1 0 611 441 2438 87 0 0 chr1 18641453 18641765 -263551899 + AluSx SINE Alu 1 312 0 1663 174 72 20 chr1 18641765 18641972 -263551692 - LTR38B LTR ERV1 -170 441 208 180 0 0 0 chr1 18641979 18641999 -263551665 + (CAT)n Simple_repeat Simple_repeat 2 21 0 871 134 0 0 chr1 18641999 18642118 -263551546 - FLAM_C SINE Alu -190 122 1 1291 101 19 0 chr1 18642118 18642327 -263551337 - LTR38B LTR ERV1 -397 213 1 2096 121 10 0 chr1 18642381 18642688 -263550976 - AluSx SINE Alu -2 310 1 307 241 24 24 chr1 18642730 18642813 -263550851 - L2 LINE L2 -2 3270 3188 377 294 27 54 chr1 18643389 18643573 -263550091 + L1MC4a LINE L1 5770 5948 -1860 902 133 75 6 chr1 18643712 18643885 -263549779 + LTR38B LTR ERV1 1 185 -425 1272 160 14 14 chr1 18644081 18644300 -263549364 + AluJo SINE Alu 85 303 -9 232 283 225 17 chr1 18644509 18644629 -263549035 + MER5A DNA MER1_type 43 187 -2 1714 151 40 0 chr1 18644639 18644917 -263548747 + AluJb SINE Alu 4 292 -20 186 43 0 0 chr1 18645606 18645629 -263548035 + (CAGG)n Simple_repeat Simple_repeat 3 25 0 184 255 82 102 chr1 18645753 18645851 -263547813 + MIR SINE MIR 51 146 -116 270 321 134 0 chr1 18646557 18646691 -263546973 - MIR SINE MIR -54 208 57 2024 127 23 3 chr1 18646701 18647008 -263546656 - AluSq SINE Alu 0 313 1 288 276 48 29 chr1 18647008 18647108 -263546556 - MIR SINE MIR -115 147 46 495 233 50 78 chr1 18647204 18647384 -263546280 + MER5B DNA MER1_type 1 175 -3 2077 124 0 0 chr1 18647560 18647850 -263545814 + AluSq SINE Alu 1 290 -23 189 246 53 18 chr1 18648287 18648344 -263545320 + MIR SINE MIR 4 62 -200 248 286 197 37 chr1 18648854 18649179 -263544485 + L2 LINE L2 1303 1679 -1635 2086 118 10 0 chr1 18649192 18649489 -263544175 - AluSg SINE Alu -10 300 1 1538 79 0 252 chr1 18649521 18649914 -263543750 - AluY SINE Alu -17 294 1 604 213 103 45 chr1 18650070 18650253 -263543411 - FRAM SINE Alu 0 166 2 1094 112 10 76 chr1 18650296 18650493 -263543171 - AluJb SINE Alu -117 195 12 746 316 186 29 chr1 18650690 18651574 -263542090 + L2 LINE L2 2254 3283 -30 2034 144 0 0 chr1 18651815 18652121 -263541543 - AluSx SINE Alu -6 306 1 1558 167 7 59 chr1 18652164 18652328 -263541336 - AluSx SINE Alu -22 290 148 2479 26 7 7 chr1 18652328 18652630 -263541034 - AluY SINE Alu -9 302 1 1558 167 7 59 chr1 18652630 18652771 -263540893 - AluSx SINE Alu -164 148 1 1081 143 0 53 chr1 18653404 18653593 -263540071 - AluSg/x SINE Alu 0 312 134 1934 93 0 15 chr1 18653593 18653862 -263539802 - AluY SINE Alu -21 290 26 292 248 58 51 chr1 18654600 18654737 -263538927 + MIR SINE MIR 74 211 -51 204 354 49 0 chr1 18655475 18655557 -263538107 + MIR SINE MIR 62 147 -61 1541 180 26 26 chr1 18655988 18656299 -263537365 - AluJo SINE Alu -1 311 1 1774 95 40 8 chr1 18656782 18657034 -263536630 + AluSq SINE Alu 1 260 -53 24 0 0 0 chr1 18657042 18657066 -263536598 + AT_rich Low_complexity Low_complexity 1 24 0 1765 146 27 14 chr1 18657084 18657378 -263536286 + AluSx SINE Alu 1 298 -14 356 173 27 40 chr1 18657381 18657456 -263536208 + MER5A DNA MER1_type 114 187 -2 778 184 0 0 chr1 18657529 18657654 -263536010 + FLAM_C SINE Alu 2 126 -17 1539 149 15 11 chr1 18657674 18657936 -263535728 + AluSq SINE Alu 1 263 -50 183 264 91 64 chr1 18657940 18658050 -263535614 - L2 LINE L2 -1324 1990 1878 511 92 0 0 chr1 18658295 18658360 -263535304 + AluJ/FLAM SINE Alu 2 66 -246 478 340 213 11 chr1 18658414 18659115 -263534549 - L2 LINE L2 -2054 1260 419 244 314 85 8 chr1 18659403 18659521 -263534143 + MIR SINE MIR 132 258 -4 1789 174 0 3 chr1 18660378 18660672 -263532992 + AluSx SINE Alu 1 293 -19 1949 104 10 21 chr1 18660683 18660972 -263532692 + AluY SINE Alu 1 286 -25 237 265 68 76 chr1 18662765 18662897 -263530767 - MLT1J2 LTR MaLR -287 163 33 241 292 174 34 chr1 18663212 18663239 -263530425 - L2 LINE L2 -2822 492 470 1989 112 7 7 chr1 18663239 18663533 -263530131 + AluSq SINE Alu 7 300 -13 2227 87 3 13 chr1 18663535 18663834 -263529830 + AluSx SINE Alu 2 297 -15 241 292 174 34 chr1 18663834 18663981 -263529683 - L2 LINE L2 -2844 470 290 2113 126 0 0 chr1 18664435 18664736 -263528928 - AluSx SINE Alu -11 301 1 850 161 20 20 chr1 18664873 18665022 -263528642 + AluSg/x SINE Alu 123 271 -39 1791 125 42 7 chr1 18666089 18666377 -263527287 + AluSx SINE Alu 1 298 -14 275 341 168 9 chr1 18666515 18666735 -263526929 - L2 LINE L2 -586 2728 2474 1239 129 129 17 chr1 18666751 18666992 -263526672 - AluJb SINE Alu -44 268 1 209 253 53 0 chr1 18667038 18667113 -263526551 - L2 LINE L2 -223 3049 2971 2104 121 16 0 chr1 18668414 18668720 -263524944 - AluSx SINE Alu -1 311 1 2114 122 0 0 chr1 18669321 18669616 -263524048 + AluSx SINE Alu 1 295 -17 368 252 99 9 chr1 18669672 18669783 -263523881 + MER5A DNA MER1_type 9 129 -60 195 286 52 0 chr1 18669877 18669954 -263523710 - MIR SINE MIR -115 147 67 211 378 0 0 chr1 18671261 18671335 -263522329 - MIR SINE MIR -57 151 78 210 350 103 10 chr1 18671658 18671755 -263521909 + MIR SINE MIR 77 182 -80 210 91 0 0 chr1 18671868 18671901 -263521763 + (CCCA)n Simple_repeat Simple_repeat 1 33 0 1988 113 14 0 chr1 18672534 18672816 -263520848 + AluSp SINE Alu 1 286 -27 1379 186 42 33 chr1 18672830 18672972 -263520692 + AluJb SINE Alu 1 140 -172 1726 150 23 10 chr1 18672972 18673278 -263520386 + AluSx SINE Alu 1 310 -2 1379 186 42 33 chr1 18673278 18673441 -263520223 + AluJb SINE Alu 140 309 -3 1790 123 26 0 chr1 18673449 18673718 -263519946 + AluSp SINE Alu 1 276 -37 350 268 237 41 chr1 18676379 18676670 -263516994 + Charlie8 DNA MER1_type 46 393 -2024 359 243 81 9 chr1 18676680 18676791 -263516873 + MIR SINE MIR 111 229 -33 1844 125 26 30 chr1 18676869 18677172 -263516492 + AluSx SINE Alu 1 302 -10 1769 119 53 21 chr1 18677791 18678076 -263515588 + AluSx SINE Alu 1 294 -18 2119 85 21 0 chr1 18678479 18678760 -263514904 + AluSx SINE Alu 1 287 -25 1970 101 18 11 chr1 18678765 18679051 -263514613 + AluSg SINE Alu 1 288 -22 26 0 0 0 chr1 18680021 18680047 -263513617 + AT_rich Low_complexity Low_complexity 1 26 0 2115 98 10 23 chr1 18684512 18684818 -263508846 + AluSx SINE Alu 1 302 -10 739 202 0 0 chr1 18686521 18686650 -263507014 + FLAM_A SINE Alu 1 129 -4 853 123 31 0 chr1 18687068 18687198 -263506466 + AluSq/x SINE Alu 1 134 -178 2035 131 3 10 chr1 18687465 18687779 -263505885 + AluSx SINE Alu 1 312 0 1460 177 58 17 chr1 18687843 18688137 -263505527 - AluJb SINE Alu -6 306 1 2094 120 3 0 chr1 18688648 18688957 -263504707 + AluSg SINE Alu 1 310 0 2224 79 10 3 chr1 18689004 18689296 -263504368 + AluSp SINE Alu 1 294 -19 413 267 109 15 chr1 18690041 18690243 -263503421 - MER112 DNA MER1_type -39 221 1 1802 132 3 50 chr1 18690603 18690922 -263502742 + AluSx SINE Alu 1 304 -8 983 157 99 0 chr1 18691149 18691340 -263502324 - MER2 DNA MER2_type -135 210 1 599 84 0 0 chr1 18691426 18691509 -263502155 - Alu SINE Alu -6 303 221 2392 58 0 0 chr1 18691594 18691889 -263501775 + AluSc SINE Alu 1 295 -14 1977 119 0 14 chr1 18692290 18692575 -263501089 + AluSx SINE Alu 1 281 -31 2134 66 28 21 chr1 18694442 18694729 -263498935 + AluSc SINE Alu 3 291 -18 2311 87 3 3 chr1 18694961 18695272 -263498392 + AluSp SINE Alu 1 311 -2 2102 108 23 0 chr1 18699972 18700277 -263493387 - AluSq SINE Alu 0 313 2 297 223 117 11 chr1 18702150 18702244 -263491420 + MIR SINE MIR 45 148 -60 1488 153 104 0 chr1 18703452 18703720 -263489944 + AluJo SINE Alu 1 296 -16 1860 99 0 8 chr1 18703723 18703975 -263489689 + AluSg SINE Alu 1 250 -60 1611 90 54 5 chr1 18703980 18704202 -263489462 - AluSq SINE Alu -47 266 34 2379 71 0 7 chr1 18704268 18704577 -263489087 + AluY SINE Alu 1 307 -4 198 0 0 0 chr1 18704577 18704599 -263489065 + (TA)n Simple_repeat Simple_repeat 2 23 0 791 174 8 0 chr1 18704602 18704734 -263488930 + AluJo/FLAM SINE Alu 1 133 -169 799 170 7 0 chr1 18704608 18704743 -263488921 + FLAM_C SINE Alu 7 142 -1 2077 90 41 7 chr1 18705033 18705323 -263488341 + AluSq SINE Alu 1 300 -13 1243 97 0 0 chr1 18706029 18706205 -263487459 + AluY SINE Alu 136 311 0 345 341 0 0 chr1 18706206 18706297 -263487367 + L1MC4 LINE L1 6613 6703 -1339 344 357 0 0 chr1 18706209 18706307 -263487357 - L1MC4 LINE L1 -1339 6703 6606 * 2440 201 116 9 chr1 18707366 18708045 -263485619 + MER21B LTR ERV1 40 814 -49 1855 111 30 0 chr1 18708048 18708319 -263485345 + AluSg SINE Alu 1 279 -31 2052 91 0 4 chr1 18708885 18709160 -263484504 + AluSq SINE Alu 34 307 -6 1731 139 3 24 chr1 18709449 18709736 -263483928 + AluSx SINE Alu 14 294 -18 248 250 36 0 chr1 18710320 18710376 -263483288 + MIR SINE MIR 86 143 -119 26 74 0 0 chr1 18710895 18710949 -263482715 + GC_rich Low_complexity Low_complexity 1 54 0 31 44 0 0 chr1 18710988 18711033 -263482631 + GC_rich Low_complexity Low_complexity 1 45 0 35 92 0 0 chr1 18711168 18711266 -263482398 + GC_rich Low_complexity Low_complexity 1 98 0 24 32 0 0 chr1 18711308 18711339 -263482325 + GC_rich Low_complexity Low_complexity 1 31 0 26 50 0 0 chr1 18711513 18711553 -263482111 + GC_rich Low_complexity Low_complexity 1 40 0 183 156 0 0 chr1 18711576 18711608 -263482056 + (CTG)n Simple_repeat Simple_repeat 3 34 0 46 33 0 0 chr1 18712958 18713018 -263480646 + GC_rich Low_complexity Low_complexity 1 60 0 249 250 24 0 chr1 18713033 18713117 -263480547 + (CCCCG)n Simple_repeat Simple_repeat 1 86 0 475 322 99 59 chr1 18713527 18713831 -263479833 - L2 LINE L2 -1 3271 2956 1315 199 45 42 chr1 18715398 18715709 -263477955 - AluJb SINE Alu 0 312 1 1955 97 61 0 chr1 18715725 18716004 -263477660 - AluSg SINE Alu -14 296 1 1740 179 0 7 chr1 18716135 18716442 -263477222 - AluJo SINE Alu -7 305 1 316 165 0 110 chr1 18716442 18716533 -263477131 + Charlie5 DNA MER1_type 2542 2622 0 210 240 40 0 chr1 18716895 18716945 -263476719 + MIR SINE MIR 205 256 -6 187 317 49 0 chr1 18716969 18717051 -263476613 - MIR SINE MIR -137 125 40 * 274 216 151 86 chr1 18717044 18717085 -263476579 + MER5A DNA MER1_type 35 72 -117 1846 140 0 48 chr1 18717085 18717232 -263476432 + AluJb SINE Alu 1 127 -185 2181 91 7 7 chr1 18717232 18717541 -263476123 + AluSq SINE Alu 1 309 -4 1846 140 0 48 chr1 18717541 18717707 -263475957 + AluJb SINE Alu 127 299 -13 274 216 151 86 chr1 18717707 18717753 -263475911 + MER5A DNA MER1_type 72 114 -75 2316 85 3 3 chr1 18717753 18718060 -263475604 - AluSq SINE Alu -6 307 1 274 216 151 86 chr1 18718060 18718110 -263475554 + MER5A DNA MER1_type 114 182 -7 559 57 38 4 chr1 18718115 18718325 -263475339 + AluSp SINE Alu 1 296 -17 2515 53 0 0 chr1 18718414 18718718 -263474946 + AluY SINE Alu 1 304 -7 261 122 0 0 chr1 18718778 18718819 -263474845 + THE1C LTR MaLR 1 41 -387 2214 74 0 0 chr1 18718819 18719145 -263474519 - AluY SINE Alu 0 326 1 1655 101 29 4 chr1 18719150 18719416 -263474248 - AluSx SINE Alu 0 313 42 1056 110 24 6 chr1 18719416 18719580 -263474084 + THE1C LTR MaLR 209 375 0 2049 104 10 7 chr1 18719999 18720296 -263473368 + AluSc SINE Alu 1 298 -11 2169 111 0 0 chr1 18720429 18720726 -263472938 + AluSx SINE Alu 1 297 -15 495 326 31 31 chr1 18721159 18721263 -263472401 - MIR SINE MIR -17 245 139 2393 125 23 13 chr1 18721263 18721648 -263472016 - MLT1B LTR MaLR -1 389 1 495 326 31 31 chr1 18721648 18721736 -263471928 - MIR SINE MIR -122 140 53 1521 165 86 4 chr1 18721749 18722028 -263471636 - AluJo SINE Alu 0 312 11 1998 118 7 7 chr1 18722035 18722058 -263471606 - AluSp SINE Alu -7 306 284 180 0 0 0 chr1 18722058 18722078 -263471586 + (TG)n Simple_repeat Simple_repeat 1 20 0 1998 118 7 7 chr1 18722078 18722360 -263471304 - AluSp SINE Alu -28 285 1 2228 87 0 0 chr1 18722623 18722961 -263470703 + AluSx SINE Alu 1 338 0 359 260 31 0 chr1 18722983 18723079 -263470585 + U13 snRNA snRNA 4 102 -2 2105 128 0 0 chr1 18723115 18723413 -263470251 + AluSx SINE Alu 10 307 -5 1502 167 22 77 chr1 18723708 18723852 -263469812 + AluJo SINE Alu 1 151 -161 2579 58 0 0 chr1 18723852 18724164 -263469500 + AluSx SINE Alu 1 312 0 1502 167 22 77 chr1 18724164 18724342 -263469322 + AluJo SINE Alu 151 305 -7 2102 107 0 0 chr1 18724473 18724754 -263468910 - AluSg1 SINE Alu -20 289 9 202 254 63 16 chr1 18724817 18724880 -263468784 - MIR3 SINE MIR -52 156 91 1943 134 13 3 chr1 18725347 18725645 -263468019 + AluSx SINE Alu 1 301 -11 2076 104 3 0 chr1 18725647 18725936 -263467728 + AluSg1 SINE Alu 1 290 -19 288 167 17 17 chr1 18726080 18726140 -263467524 - MIR SINE MIR -109 153 94 295 382 7 7 chr1 18726147 18726283 -263467381 + L2 LINE L2 3175 3310 -3 1054 131 5 70 chr1 18726289 18726445 -263467219 + LTR26B LTR ERV1 1 141 -390 1893 133 17 3 chr1 18726445 18726738 -263466926 - AluSx SINE Alu -15 297 1 1054 131 5 70 chr1 18726738 18726795 -263466869 + LTR26B LTR ERV1 141 200 -331 1548 158 10 47 chr1 18726804 18726943 -263466721 + AluSx SINE Alu 5 148 -164 2142 60 14 18 chr1 18726943 18727247 -263466417 + AluY SINE Alu 1 303 0 2257 101 0 0 chr1 18727247 18727554 -263466110 + AluSg SINE Alu 1 307 -3 1843 126 7 17 chr1 18727554 18727848 -263465816 + AluY SINE Alu 1 291 -20 1548 158 10 47 chr1 18727848 18728003 -263465661 + AluSx SINE Alu 145 291 -21 1739 83 38 102 chr1 18728005 18728318 -263465346 + AluSp SINE Alu 1 293 -20 2357 72 7 0 chr1 18728318 18728625 -263465039 + AluSg SINE Alu 1 309 -1 940 170 13 0 chr1 18728625 18728778 -263464886 + LTR26B LTR ERV1 377 531 0 873 150 29 118 chr1 18728964 18729102 -263464562 + MER58 DNA MER1_type 2163 2312 -108 1702 184 7 7 chr1 18729102 18729401 -263464263 + AluSx SINE Alu 2 300 -12 2432 60 0 16 chr1 18729402 18729717 -263463947 + AluY SINE Alu 2 311 0 873 150 29 118 chr1 18729717 18729856 -263463808 + MER58 DNA MER1_type 2311 2417 -3 1245 157 0 51 chr1 18729858 18730034 -263463630 - AluJo SINE Alu -3 309 146 1991 122 24 0 chr1 18730034 18730328 -263463336 - AluSx SINE Alu -11 301 1 1245 157 0 51 chr1 18730328 18730387 -263463277 - AluJo SINE Alu -166 146 86 458 171 126 0 chr1 18730387 18730475 -263463189 + L1ME3A LINE L1 6044 6150 -20 501 84 0 0 chr1 18730475 18730546 -263463118 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 458 171 126 0 chr1 18730546 18730568 -263463096 + L1ME3A LINE L1 6150 6168 -2 1976 164 0 0 chr1 18730572 18730882 -263462782 + AluSx SINE Alu 1 310 -2 2187 104 3 0 chr1 18730882 18731180 -263462484 + AluSp SINE Alu 1 299 -14 2269 75 0 0 chr1 18731193 18731475 -263462189 + AluSq SINE Alu 1 282 -31 2254 86 3 3 chr1 18731475 18731775 -263461889 - AluSq SINE Alu -10 303 1 1247 57 0 0 chr1 18731797 18731955 -263461709 - L1PA4 LINE L1 -1 6154 5997 182 265 103 0 chr1 18732202 18732270 -263461394 + L2 LINE L2 2986 3060 -212 326 265 11 127 chr1 18732292 18732481 -263461183 - MIR SINE MIR -94 168 2 1961 141 0 0 chr1 18732533 18732831 -263460833 + AluSx SINE Alu 1 298 -14 1078 105 0 55 chr1 18732947 18733120 -263460544 - AluSp SINE Alu -14 299 135 2171 92 7 0 chr1 18733120 18733413 -263460251 - AluSx SINE Alu -17 295 1 263 279 30 18 chr1 18733440 18733560 -263460104 - MIR SINE MIR -89 119 3 1914 93 0 8 chr1 18734194 18734453 -263459211 + AluSq SINE Alu 57 313 0 2354 90 0 0 chr1 18734463 18734774 -263458890 + AluY SINE Alu 1 311 0 287 211 0 126 chr1 18734823 18734878 -263458786 - L1ME LINE L1 -459 5662 5622 2157 100 0 13 chr1 18734878 18735188 -263458476 - AluSg SINE Alu -4 306 1 287 211 0 126 chr1 18735188 18735227 -263458437 - L1ME LINE L1 -499 5622 5580 1100 120 10 57 chr1 18735331 18735523 -263458141 + AluSx SINE Alu 3 185 -127 709 119 8 71 chr1 18735687 18735813 -263457851 + AluSx SINE Alu 184 301 -11 199 334 73 11 chr1 18735813 18735916 -263457748 - MIR SINE MIR -84 124 14 294 347 74 17 chr1 18736729 18736905 -263456759 - MIR3 SINE MIR -3 205 20 292 271 233 45 chr1 18737036 18737136 -263456528 - L3 LINE CR1 -16 1561 1428 2168 62 4 4 chr1 18737136 18737434 -263456230 - AluSp SINE Alu 0 312 15 292 271 233 45 chr1 18737434 18737465 -263456199 - L3 LINE CR1 -149 1428 1404 784 269 25 33 chr1 18737486 18737728 -263455936 - MIR SINE MIR -15 247 8 264 279 77 56 chr1 18738293 18738454 -263455210 - MIR SINE MIR -69 139 21 633 170 0 0 chr1 18738910 18739004 -263454660 + FRAM SINE Alu 10 103 -73 2220 111 0 9 chr1 18739025 18739340 -263454324 - AluSx SINE Alu 0 312 1 491 306 166 0 chr1 18739357 18739514 -263454150 - MIR SINE MIR -12 250 68 277 310 30 10 chr1 18739555 18739655 -263454009 - MIR3 SINE MIR -102 106 5 193 358 101 0 chr1 18739668 18739777 -263453887 + MIR SINE MIR 34 153 -55 1888 108 0 99 chr1 18739953 18740277 -263453387 + AluSx SINE Alu 11 302 -10 1227 113 72 0 chr1 18740282 18740317 -263453347 + AluJb SINE Alu 83 114 -198 513 0 0 0 chr1 18740317 18740374 -263453290 + (CA)n Simple_repeat Simple_repeat 2 58 0 1227 113 72 0 chr1 18740374 18740532 -263453132 + AluJb SINE Alu 114 290 -22 270 314 0 48 chr1 18740593 18740698 -263452966 - MIR SINE MIR -131 131 32 352 315 39 0 chr1 18741318 18741445 -263452219 + MIR SINE MIR 22 153 -55 930 129 0 0 chr1 18741474 18741606 -263452058 + FRAM SINE Alu 10 141 -35 222 37 0 0 chr1 18741611 18741638 -263452026 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr1 18741645 18741666 -263451998 + AT_rich Low_complexity Low_complexity 1 21 0 2044 152 3 0 chr1 18741673 18741983 -263451681 + AluSx SINE Alu 1 311 -1 289 297 91 3 chr1 18742342 18742510 -263451154 + MIR SINE MIR 12 248 -14 1741 167 13 3 chr1 18742574 18742880 -263450784 + AluSx SINE Alu 1 309 -3 1982 146 30 0 chr1 18743808 18744110 -263449554 - AluSx SINE Alu -1 311 1 1574 159 52 11 chr1 18744160 18744462 -263449202 - AluJo SINE Alu 0 313 1 518 104 28 9 chr1 18744482 18744588 -263449076 + (TCCA)n Simple_repeat Simple_repeat 2 109 0 336 343 63 14 chr1 18744588 18744731 -263448933 - L2 LINE L2 0 3272 3123 401 277 43 14 chr1 18744758 18744899 -263448765 + MIR SINE MIR 114 258 -4 229 204 0 0 chr1 18744901 18744950 -263448714 + (ATG)n Simple_repeat Simple_repeat 2 50 0 2142 119 3 0 chr1 18744952 18745254 -263448410 - AluSx SINE Alu -9 303 1 2330 100 0 0 chr1 18745774 18746084 -263447580 - AluSq SINE Alu -3 310 1 204 308 64 0 chr1 18746092 18746170 -263447494 + L2 LINE L2 3187 3269 -3 513 268 24 24 chr1 18746219 18746387 -263447277 + MIR SINE MIR 17 184 -78 356 270 55 115 chr1 18746585 18746685 -263446979 + MIR SINE MIR 63 147 -115 2078 100 40 3 chr1 18746685 18746986 -263446678 + AluSx SINE Alu 1 312 0 356 270 55 115 chr1 18746986 18747085 -263446579 + MIR SINE MIR 147 250 -12 458 223 49 3 chr1 18747418 18747559 -263446105 + MIR SINE MIR 36 186 -75 2144 115 0 0 chr1 18748538 18748834 -263444830 - AluSx SINE Alu -12 300 5 704 196 34 0 chr1 18749129 18749277 -263444387 + MIR SINE MIR 110 262 0 831 134 0 0 chr1 18749289 18749408 -263444256 - FLAM_C SINE Alu -19 124 6 2123 121 0 19 chr1 18749896 18750072 -263443592 - AluSx SINE Alu -3 309 140 2281 75 0 3 chr1 18750072 18750366 -263443298 - AluY SINE Alu -18 293 1 2123 121 0 19 chr1 18750366 18750504 -263443160 - AluSx SINE Alu -172 140 1 2203 112 3 0 chr1 18750527 18750832 -263442832 - AluSx SINE Alu -6 306 1 3621 116 19 17 chr1 18750855 18751381 -263442283 - MER1A DNA MER1_type 0 527 1 345 283 0 53 chr1 18751392 18751505 -263442159 + MIR3 SINE MIR 10 116 -92 413 320 73 56 chr1 18751751 18752092 -263441572 - L2 LINE L2 0 3272 2926 1692 181 13 3 chr1 18752141 18752439 -263441225 + AluJb SINE Alu 1 301 -11 821 255 49 45 chr1 18752658 18752814 -263440850 - MER102b DNA MER1_type -1137 291 132 1634 162 41 3 chr1 18752814 18752982 -263440682 - AluJo SINE Alu -11 301 116 306 0 0 0 chr1 18752982 18753016 -263440648 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 1634 162 41 3 chr1 18753016 18753137 -263440527 - AluJo SINE Alu -196 116 1 821 255 49 45 chr1 18753137 18753266 -263440398 - MER102b DNA MER1_type -1296 132 5 211 200 0 0 chr1 18753660 18753678 -263439986 + A-rich Low_complexity Low_complexity 1 18 -27 963 112 0 8 chr1 18753678 18753812 -263439852 + FLAM_C SINE Alu 1 133 0 211 200 0 0 chr1 18753812 18753838 -263439826 + A-rich Low_complexity Low_complexity 17 45 0 826 155 88 0 chr1 18753887 18754035 -263439629 + FRAM SINE Alu 14 174 -2 361 264 0 22 chr1 18754259 18754350 -263439314 + L2 LINE L2 3210 3298 -15 202 206 16 48 chr1 18754408 18754471 -263439193 - L2 LINE L2 -106 3207 3147 244 370 16 8 chr1 18754516 18754643 -263439021 + L2 LINE L2 3166 3293 -20 254 236 115 47 chr1 18754948 18755097 -263438567 + MIR SINE MIR 38 202 -60 345 237 144 10 chr1 18756859 18756956 -263436708 + L2 LINE L2 3204 3313 0 1046 125 0 0 chr1 18757073 18757209 -263436455 + AluSq/x SINE Alu 1 136 -176 2231 126 3 3 chr1 18757210 18757511 -263436153 + AluSx SINE Alu 1 301 -11 900 189 41 18 chr1 18757650 18757819 -263435845 - AluJo/FRAM SINE Alu -7 305 133 2554 63 0 9 chr1 18757819 18758134 -263435530 - AluSx SINE Alu 0 312 1 851 457 79 0 chr1 18758189 18758469 -263435195 + AluSx SINE Alu 1 302 0 1356 124 5 5 chr1 18758912 18759106 -263434558 - AluSg/x SINE Alu -15 295 102 2522 96 0 0 chr1 18759109 18759422 -263434242 - AluSq SINE Alu 0 313 1 2210 95 9 41 chr1 18759428 18759744 -263433920 - AluSq SINE Alu -6 307 2 2519 81 3 0 chr1 18759755 18760064 -263433600 - AluSp SINE Alu -3 310 1 543 181 9 14 chr1 18760064 18760210 -263433454 + LTR56 LTR ERV1 321 467 0 600 124 10 0 chr1 18760216 18760313 -263433351 - AluSg/x SINE Alu -13 296 199 1971 114 0 0 chr1 18760313 18760576 -263433088 + AluSx SINE Alu 50 312 0 464 176 168 24 chr1 18760601 18760726 -263432938 - MER31B LTR ERV1 -7 459 317 467 147 64 103 chr1 18760733 18760889 -263432775 - MER34B LTR ERV1 -10 555 406 2019 138 13 13 chr1 18760911 18761223 -263432441 + AluJb SINE Alu 1 312 0 613 180 14 43 chr1 18761340 18761479 -263432185 + MER58 DNA MER1_type 2283 2417 -3 1336 150 0 52 chr1 18761483 18761656 -263432008 - AluJo SINE Alu -6 306 146 2159 116 24 0 chr1 18761656 18761950 -263431714 - AluSx SINE Alu -11 301 1 1336 150 0 52 chr1 18761950 18762009 -263431655 - AluJo SINE Alu -166 146 86 459 171 126 0 chr1 18762009 18762097 -263431567 + L1ME3A LINE L1 6044 6150 -20 567 96 0 0 chr1 18762097 18762180 -263431484 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 459 171 126 0 chr1 18762180 18762202 -263431462 + L1ME3A LINE L1 6150 6168 -2 2074 164 0 0 chr1 18762206 18762511 -263431153 + AluSx SINE Alu 1 305 -7 2331 104 3 0 chr1 18762513 18762812 -263430852 + AluSp SINE Alu 1 300 -13 2040 134 0 0 chr1 18762825 18763102 -263430562 + AluSx SINE Alu 1 277 -35 1211 78 14 44 chr1 18763102 18763567 -263430097 + MER61-int LTR ERV1 1907 2497 -2720 981 104 0 0 chr1 18763748 18763902 -263429762 + MER61-int LTR ERV1 2486 2639 -2578 2376 96 7 3 chr1 18763902 18764205 -263429459 + AluSg SINE Alu 2 305 -5 398 234 74 11 chr1 18764246 18764421 -263429243 + L2 LINE L2 2807 2992 -321 1790 171 3 13 chr1 18764456 18764761 -263428903 - AluJo SINE Alu -10 302 1 271 222 86 12 chr1 18764865 18764946 -263428718 + L2 LINE L2 3005 3091 -181 227 317 132 24 chr1 18765243 18765410 -263428254 + MIR SINE MIR 31 215 -47 718 219 84 0 chr1 18765414 18765592 -263428072 + MIR SINE MIR 70 262 0 2322 105 0 0 chr1 18765693 18765987 -263427677 - AluSg SINE Alu -14 296 3 1342 103 0 0 chr1 18765989 18766163 -263427501 - AluSg/x SINE Alu -6 304 131 418 202 11 0 chr1 18766263 18766352 -263427312 + Ricksha DNA DNA 3154 3243 -8 206 258 32 16 chr1 18766693 18766755 -263426909 + GA-rich Low_complexity Low_complexity 4 66 0 436 105 26 0 chr1 18766808 18766884 -263426780 + (TGGA)n Simple_repeat Simple_repeat 4 81 0 432 81 0 0 chr1 18817430 18817492 -263376172 + Alu SINE Alu 238 299 -11 327 286 28 99 chr1 18817500 18817533 -263376131 - MLT1I LTR MaLR -46 363 329 2248 86 0 10 chr1 18817533 18817666 -263375998 + AluSg SINE Alu 1 134 -176 2128 112 0 3 chr1 18817666 18817970 -263375694 + AluSg SINE Alu 1 303 -7 2248 86 0 10 chr1 18817970 18818137 -263375527 + AluSg SINE Alu 134 298 -12 1983 113 3 36 chr1 18818139 18818448 -263375216 + AluY SINE Alu 3 301 -10 327 286 28 99 chr1 18818448 18818593 -263375071 - MLT1I LTR MaLR -81 328 195 1909 149 3 0 chr1 18818789 18819090 -263374574 - AluSx SINE Alu -10 302 1 581 264 90 12 chr1 18819120 18819325 -263374339 - MIR SINE MIR -1 261 41 2192 82 3 3 chr1 18819325 18819617 -263374047 - AluSp SINE Alu -21 292 1 581 264 90 12 chr1 18819617 18819639 -263374025 - MIR SINE MIR -221 41 22 830 174 0 8 chr1 18819754 18819886 -263373778 + FLAM_C SINE Alu 1 131 -2 36 53 0 0 chr1 18820129 18820186 -263373478 + AT_rich Low_complexity Low_complexity 1 57 0 620 26 0 0 chr1 18820192 18820270 -263373394 - L1PA3 LINE L1 0 6155 6078 502 266 56 0 chr1 18820298 18820441 -263373223 - MIR SINE MIR -107 155 5 1137 200 79 0 chr1 18820851 18821131 -263372533 - AluSq SINE Alu -1 302 1 498 329 31 4 chr1 18821134 18821359 -263372305 + L2 LINE L2 2308 2538 -776 493 108 0 0 chr1 18821359 18821424 -263372240 - AluJ/FLAM SINE Alu -246 66 2 357 299 136 0 chr1 18821434 18821581 -263372083 + MIR SINE MIR 81 247 -15 2136 117 0 0 chr1 18822175 18822465 -263371199 - AluSx SINE Alu -22 290 1 218 305 0 0 chr1 18822539 18822598 -263371066 + C-rich Low_complexity Low_complexity 2 60 0 2160 126 0 0 chr1 18822737 18823047 -263370617 - AluSx SINE Alu -2 310 1 391 325 44 58 chr1 18823784 18823879 -263369785 + MIR SINE MIR 58 153 -109 846 146 0 0 chr1 18823879 18824002 -263369662 + FLAM_C SINE Alu 1 123 -10 391 325 44 58 chr1 18824002 18824112 -263369552 + MIR SINE MIR 153 260 -2 1011 147 0 6 chr1 18824114 18824277 -263369387 - AluSg/x SINE Alu -12 298 137 419 337 35 25 chr1 18824590 18824789 -263368875 - L2 LINE L2 0 3313 3113 514 283 70 6 chr1 18824930 18825111 -263368553 - MIR SINE MIR -47 215 25 481 252 17 8 chr1 18825603 18825722 -263367942 + MIR SINE MIR 15 134 -128 2021 116 7 7 chr1 18825751 18826043 -263367621 - AluSx SINE Alu -20 292 1 1660 173 3 3 chr1 18826052 18826341 -263367323 - AluJo SINE Alu -23 289 1 2060 123 0 0 chr1 18826375 18826681 -263366983 + AluSx SINE Alu 1 306 0 24 0 0 0 chr1 18826681 18826705 -263366959 + AT_rich Low_complexity Low_complexity 1 24 0 605 278 56 39 chr1 18826893 18827177 -263366487 - MARNA DNA Mariner -39 547 259 2209 88 3 55 chr1 18827422 18827752 -263365912 - AluSp SINE Alu 0 313 1 2249 104 10 0 chr1 18827754 18828062 -263365602 - AluSx SINE Alu -1 311 1 469 202 24 24 chr1 18828756 18828880 -263364784 + MER20 DNA MER1_type 1 124 -95 2165 107 0 19 chr1 18828908 18829225 -263364439 - AluSx SINE Alu -1 311 1 1663 195 20 0 chr1 18829260 18829562 -263364102 - AluJb SINE Alu -4 308 1 204 243 0 0 chr1 18830625 18830662 -263363002 - MIR SINE MIR -193 69 33 317 287 68 12 chr1 18830780 18830945 -263362719 + MIR SINE MIR 25 207 -55 1645 139 68 7 chr1 18830948 18831229 -263362435 - AluSx SINE Alu -5 307 10 2051 124 0 7 chr1 18831281 18831588 -263362076 - AluSx SINE Alu -7 305 1 1084 201 18 27 chr1 18831617 18831841 -263361823 - MER58A DNA MER1_type 0 224 3 2218 109 0 34 chr1 18832135 18832457 -263361207 + AluSx SINE Alu 1 311 -1 2176 81 3 20 chr1 18832509 18832806 -263360858 + AluSp SINE Alu 2 293 -20 367 226 0 21 chr1 18832857 18832950 -263360714 - MIR SINE MIR -51 211 121 1813 148 23 7 chr1 18832953 18833256 -263360408 + AluJb SINE Alu 5 312 0 1369 112 9 40 chr1 18833258 18833482 -263360182 + AluSg/x SINE Alu 83 299 -11 199 334 73 11 chr1 18833482 18833585 -263360079 - MIR SINE MIR -84 124 14 294 347 74 17 chr1 18834398 18834574 -263359090 - MIR3 SINE MIR -3 205 20 292 271 233 45 chr1 18834705 18834805 -263358859 - L3 LINE CR1 -16 1561 1428 2168 62 4 4 chr1 18834805 18835103 -263358561 - AluSp SINE Alu 0 312 15 292 271 233 45 chr1 18835103 18835134 -263358530 - L3 LINE CR1 -149 1428 1404 784 269 25 33 chr1 18835155 18835397 -263358267 - MIR SINE MIR -15 247 8 264 274 72 62 chr1 18835962 18836118 -263357546 - MIR SINE MIR -69 139 33 633 170 0 0 chr1 18836579 18836673 -263356991 + FRAM SINE Alu 10 103 -73 2202 114 0 9 chr1 18836694 18837009 -263356655 - AluSx SINE Alu 0 312 1 491 306 166 0 chr1 18837026 18837183 -263356481 - MIR SINE MIR -12 250 68 277 310 30 10 chr1 18837224 18837324 -263356340 - MIR3 SINE MIR -102 106 5 193 358 101 0 chr1 18837337 18837446 -263356218 + MIR SINE MIR 34 153 -55 1898 102 3 99 chr1 18837622 18837945 -263355719 + AluSx SINE Alu 11 302 -10 1254 108 72 0 chr1 18837950 18837985 -263355679 + AluJb SINE Alu 83 114 -198 567 0 0 0 chr1 18837985 18838048 -263355616 + (CA)n Simple_repeat Simple_repeat 2 64 0 1254 108 72 0 chr1 18838048 18838206 -263355458 + AluJb SINE Alu 114 290 -22 270 314 0 48 chr1 18838267 18838372 -263355292 - MIR SINE MIR -131 131 32 352 315 39 0 chr1 18838992 18839119 -263354545 + MIR SINE MIR 22 153 -55 930 129 0 0 chr1 18839148 18839280 -263354384 + FRAM SINE Alu 10 141 -35 222 37 0 0 chr1 18839285 18839312 -263354352 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr1 18839319 18839340 -263354324 + AT_rich Low_complexity Low_complexity 1 21 0 2044 152 3 0 chr1 18839347 18839657 -263354007 + AluSx SINE Alu 1 311 -1 289 297 91 3 chr1 18840016 18840184 -263353480 + MIR SINE MIR 12 248 -14 1768 163 10 7 chr1 18840248 18840554 -263353110 + AluSx SINE Alu 1 307 -5 2000 142 30 0 chr1 18841473 18841775 -263351889 - AluSx SINE Alu -1 311 1 1589 163 52 7 chr1 18841825 18842126 -263351538 - AluJo SINE Alu 0 313 1 518 104 28 9 chr1 18842146 18842252 -263351412 + (TCCA)n Simple_repeat Simple_repeat 2 109 0 336 343 63 14 chr1 18842252 18842395 -263351269 - L2 LINE L2 0 3272 3123 401 277 43 14 chr1 18842422 18842563 -263351101 + MIR SINE MIR 114 258 -4 229 204 0 0 chr1 18842565 18842614 -263351050 + (ATG)n Simple_repeat Simple_repeat 2 50 0 2127 123 3 0 chr1 18842616 18842918 -263350746 - AluSx SINE Alu -9 303 1 2322 100 0 0 chr1 18843438 18843747 -263349917 - AluSq SINE Alu -4 309 1 204 308 64 0 chr1 18843755 18843833 -263349831 + L2 LINE L2 3187 3269 -3 513 268 24 24 chr1 18843882 18844050 -263349614 + MIR SINE MIR 17 184 -78 355 265 55 115 chr1 18844248 18844348 -263349316 + MIR SINE MIR 63 147 -115 2064 103 40 3 chr1 18844348 18844649 -263349015 + AluSx SINE Alu 1 312 0 355 265 55 115 chr1 18844649 18844748 -263348916 + MIR SINE MIR 147 250 -12 458 223 49 3 chr1 18845081 18845222 -263348442 + MIR SINE MIR 36 186 -75 2152 114 0 0 chr1 18846209 18846506 -263347158 - AluSx SINE Alu -11 301 5 704 196 34 0 chr1 18846801 18846949 -263346715 + MIR SINE MIR 110 262 0 831 134 0 0 chr1 18846961 18847080 -263346584 - FLAM_C SINE Alu -19 124 6 2123 121 0 19 chr1 18847568 18847744 -263345920 - AluSx SINE Alu -3 309 140 2281 75 0 3 chr1 18847744 18848038 -263345626 - AluY SINE Alu -18 293 1 2123 121 0 19 chr1 18848038 18848176 -263345488 - AluSx SINE Alu -172 140 1 2186 115 3 0 chr1 18848199 18848504 -263345160 - AluSx SINE Alu -6 306 1 3621 116 19 17 chr1 18848527 18849053 -263344611 - MER1A DNA MER1_type 0 527 1 345 283 0 53 chr1 18849064 18849177 -263344487 + MIR3 SINE MIR 10 116 -92 413 320 73 56 chr1 18849423 18849764 -263343900 - L2 LINE L2 0 3272 2926 1692 181 13 3 chr1 18849813 18850111 -263343553 + AluJb SINE Alu 1 301 -11 821 255 49 45 chr1 18850330 18850486 -263343178 - MER102b DNA MER1_type -1137 291 132 1594 169 41 3 chr1 18850486 18850654 -263343010 - AluJo SINE Alu -11 301 116 261 0 0 0 chr1 18850654 18850683 -263342981 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1594 169 41 3 chr1 18850683 18850804 -263342860 - AluJo SINE Alu -196 116 1 821 255 49 45 chr1 18850804 18850933 -263342731 - MER102b DNA MER1_type -1296 132 5 211 200 0 0 chr1 18851327 18851345 -263342319 + A-rich Low_complexity Low_complexity 1 18 -27 963 112 0 8 chr1 18851345 18851479 -263342185 + FLAM_C SINE Alu 1 133 0 211 200 0 0 chr1 18851479 18851505 -263342159 + A-rich Low_complexity Low_complexity 17 45 0 807 162 88 0 chr1 18851554 18851702 -263341962 + FRAM SINE Alu 14 174 -2 361 264 0 22 chr1 18851926 18852017 -263341647 + L2 LINE L2 3210 3298 -15 202 206 16 48 chr1 18852075 18852138 -263341526 - L2 LINE L2 -106 3207 3147 244 370 16 8 chr1 18852183 18852310 -263341354 + L2 LINE L2 3166 3293 -20 254 236 115 47 chr1 18852614 18852763 -263340901 + MIR SINE MIR 38 202 -60 48 72 0 0 chr1 18853268 18853365 -263340299 + GC_rich Low_complexity Low_complexity 1 97 0 365 237 144 10 chr1 18854964 18855061 -263338603 + L2 LINE L2 3204 3313 0 2121 145 0 16 chr1 18855178 18855315 -263338349 + AluSx SINE Alu 1 139 -173 2166 128 3 0 chr1 18855315 18855619 -263338045 + AluSq SINE Alu 1 305 -8 2121 145 0 16 chr1 18855619 18855798 -263337866 + AluSx SINE Alu 139 312 0 1697 174 4 4 chr1 18855800 18856081 -263337583 + AluJo SINE Alu 5 285 -27 187 268 54 0 chr1 18856124 18856180 -263337484 - L2 LINE L2 -4 3268 3210 392 308 26 51 chr1 18856312 18856507 -263337157 - MIR SINE MIR -52 210 21 2148 102 3 0 chr1 18856760 18857065 -263336599 - AluSq SINE Alu 0 306 1 2018 109 3 24 chr1 18857076 18857370 -263336294 - AluSq SINE Alu -25 288 1 234 91 0 0 chr1 18857378 18857411 -263336253 + (TA)n Simple_repeat Simple_repeat 1 33 0 2214 84 0 17 chr1 18857418 18857715 -263335949 - AluSq SINE Alu -21 292 1 22 94 0 0 chr1 18857717 18857781 -263335883 + AT_rich Low_complexity Low_complexity 1 64 0 2364 113 3 3 chr1 18857854 18858209 -263335455 - THE1B LTR MaLR -9 355 1 186 71 0 0 chr1 18858213 18858241 -263335423 + (TG)n Simple_repeat Simple_repeat 2 29 0 797 157 138 0 chr1 18858245 18858404 -263335260 - MER63B DNA MER1_type -255 181 1 182 231 173 0 chr1 18858404 18858456 -263335208 - L2 LINE L2 -64 3249 3189 218 209 0 0 chr1 18858977 18859020 -263334644 + L2 LINE L2 2919 2961 -311 231 182 0 0 chr1 18859040 18859084 -263334580 - L2 LINE L2 -310 2962 2919 483 272 113 41 chr1 18859583 18859778 -263333886 - MIR SINE MIR -45 217 9 263 302 124 0 chr1 18860885 18861014 -263332650 - L1ME4a LINE L1 0 6121 5977 509 292 77 18 chr1 18861091 18861319 -263332345 + MIR SINE MIR 22 261 -1 978 236 114 84 chr1 18861321 18861818 -263331846 - MER34 LTR ERV1 0 542 27 2133 121 16 0 chr1 18861818 18862123 -263331541 - AluSx SINE Alu -2 310 1 978 236 114 84 chr1 18862123 18862151 -263331513 - MER34 LTR ERV1 -515 27 1 819 249 26 97 chr1 18862153 18862193 -263331471 - L2 LINE L2 -68 3245 3204 2085 132 0 0 chr1 18862193 18862497 -263331167 - AluSx SINE Alu -8 304 1 819 249 26 97 chr1 18862497 18862846 -263330818 - L2 LINE L2 -109 3204 2884 205 366 38 53 chr1 18862991 18863122 -263330542 - L2 LINE L2 -4 3268 3140 789 324 132 16 chr1 18863132 18863535 -263330129 - L2 LINE L2 -568 2746 2242 2135 119 3 3 chr1 18863535 18863845 -263329819 + AluSq SINE Alu 1 310 -3 789 324 132 16 chr1 18863845 18864070 -263329594 - L2 LINE L2 -1072 2242 2045 330 338 44 54 chr1 18864070 18864274 -263329390 - MIR SINE MIR -25 237 36 274 315 0 0 chr1 18864371 18864444 -263329220 - L2 LINE L2 -11 3261 3189 238 260 110 27 chr1 18864936 18865009 -263328655 - MIR SINE MIR -92 116 38 241 308 89 14 chr1 18865349 18865512 -263328152 + MIR SINE MIR 3 180 -68 * 601 317 53 18 chr1 18865507 18865575 -263328089 - MIR SINE MIR 0 262 198 1815 141 3 66 chr1 18865575 18865894 -263327770 - AluSx SINE Alu -13 299 1 601 317 53 18 chr1 18865894 18866052 -263327612 - MIR SINE MIR -64 198 28 207 368 14 21 chr1 18866187 18866331 -263327333 - MIR3 SINE MIR -56 152 10 501 284 46 67 chr1 18866337 18866531 -263327133 + MIR3 SINE MIR 18 207 -1 2017 112 0 24 chr1 18866678 18866973 -263326691 + AluJo SINE Alu 9 296 -16 385 304 85 45 chr1 18866994 18867195 -263326469 - MIR SINE MIR -1 261 53 371 263 127 0 chr1 18867579 18867697 -263325967 - MIR3 SINE MIR -22 186 54 1816 172 6 16 chr1 18867839 18868153 -263325511 - AluJo SINE Alu -1 311 1 260 293 0 24 chr1 18868302 18868400 -263325264 + MIR SINE MIR 48 136 -72 225 283 62 9 chr1 18868401 18868514 -263325150 + MER103 DNA DNA 46 164 -2 1877 136 35 0 chr1 18868631 18868917 -263324747 - AluSx SINE Alu -16 296 1 512 282 35 0 chr1 18869566 18869736 -263323928 + MIR3 SINE MIR 22 197 -11 454 311 5 62 chr1 18869913 18870106 -263323558 - MER5A DNA MER1_type -1 188 7 1043 201 6 0 chr1 18870137 18870311 -263323353 + FAM SINE Alu 1 175 0 2209 121 0 6 chr1 18870322 18870636 -263323028 + AluSx SINE Alu 1 312 0 419 338 0 21 chr1 18870755 18870900 -263322764 - MER5A DNA MER1_type -2 187 46 978 211 0 0 chr1 18871271 18871553 -263322111 + (TCCA)n Simple_repeat Simple_repeat 1 282 0 496 388 67 7 chr1 18871560 18871859 -263321805 - L2 LINE L2 0 3272 2956 814 254 36 9 chr1 18872333 18872553 -263321111 + MIR SINE MIR 12 237 -25 361 303 79 7 chr1 18872640 18872792 -263320872 + MIR SINE MIR 31 193 -69 264 346 74 31 chr1 18873429 18873591 -263320073 - MIR SINE MIR -73 189 21 2238 99 3 0 chr1 18873833 18874125 -263319539 - AluSp SINE Alu -20 293 1 496 297 132 9 chr1 18874222 18874434 -263319230 + MIR SINE MIR 19 256 -6 206 324 63 18 chr1 18874756 18874867 -263318797 - MIR SINE MIR -59 149 34 401 267 69 0 chr1 18875169 18875285 -263318379 + MIR3 SINE MIR 6 129 -79 201 325 13 26 chr1 18875287 18875364 -263318300 - L2 LINE L2 0 3313 3238 1920 157 0 7 chr1 18875393 18875698 -263317966 + AluJb SINE Alu 1 303 -9 268 300 70 0 chr1 18875723 18875823 -263317841 + MIR SINE MIR 156 262 0 197 254 0 68 chr1 18876052 18876111 -263317553 + L2 LINE L2 3255 3309 -4 316 237 9 79 chr1 18876465 18876495 -263317169 + L2 LINE L2 3191 3222 -91 2046 141 0 0 chr1 18876495 18876794 -263316870 - AluJb SINE Alu -11 301 3 316 237 9 79 chr1 18876794 18876877 -263316787 + L2 LINE L2 3222 3296 -17 243 61 0 0 chr1 18876881 18876914 -263316750 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 388 281 109 8 chr1 18876937 18877065 -263316599 - MIR SINE MIR -108 154 14 222 309 31 21 chr1 18877065 18877162 -263316502 + L3 LINE CR1 1475 1572 -5 868 308 8 8 chr1 18877825 18878072 -263315592 + MIR SINE MIR 6 252 -10 1524 192 68 0 chr1 18878258 18878581 -263315083 - MLT1A1 LTR MaLR -12 353 9 196 323 140 11 chr1 18879141 18879234 -263314430 - L2 LINE L2 -29 3243 3139 1247 146 24 14 chr1 18879420 18879632 -263314032 - MER20 DNA MER1_type -2 217 4 2129 119 0 3 chr1 18880632 18880925 -263312739 - AluSx SINE Alu -20 292 1 464 289 7 20 chr1 18881486 18881638 -263312026 - MIR SINE MIR -6 256 107 368 292 59 15 chr1 18882439 18882574 -263311090 + MIR SINE MIR 38 174 -62 181 271 68 17 chr1 18883250 18883309 -263310355 + L3b LINE CR1 1421 1482 -101 2178 258 162 15 chr1 18883529 18884933 -263308731 - L2 LINE L2 -3 3310 1671 2066 148 0 0 chr1 18884933 18885244 -263308420 - AluSx SINE Alu -1 311 1 2178 258 162 15 chr1 18885244 18885282 -263308382 - L2 LINE L2 -1642 1671 1640 266 279 48 39 chr1 18886084 18886188 -263307476 + L2 LINE L2 3202 3306 -7 276 309 73 1 chr1 18886519 18886655 -263307009 + MIR SINE MIR 59 202 -6 197 139 23 0 chr1 18886983 18887026 -263306638 + GA-rich Low_complexity Low_complexity 1 44 0 255 316 51 0 chr1 18887614 18887693 -263305971 + MIR3 SINE MIR 79 161 -47 318 248 0 74 chr1 18888653 18888774 -263304890 + MER5B DNA MER1_type 45 156 -22 271 338 78 47 chr1 18888782 18889141 -263304523 - L2 LINE L2 -218 3054 2675 243 281 0 16 chr1 18890211 18890275 -263303389 - MIR SINE MIR -183 79 17 246 279 96 29 chr1 18890314 18890418 -263303246 + MIR3 SINE MIR 93 203 -5 2128 113 7 7 chr1 18890447 18890756 -263302908 - AluSx SINE Alu -3 309 1 450 199 37 32 chr1 18890756 18890893 -263302771 - MIR SINE MIR -54 154 36 301 222 38 52 chr1 18891125 18891274 -263302390 + MIR SINE MIR 16 160 -48 1554 154 19 8 chr1 18891826 18892085 -263301579 + AluJo SINE Alu 14 275 -37 289 254 75 45 chr1 18892167 18892301 -263301363 + L1MC4a LINE L1 5798 5935 -1873 2189 110 3 0 chr1 18892429 18892730 -263300934 - AluSx SINE Alu -10 302 1 586 248 220 5 chr1 18892788 18893002 -263300662 + MIR SINE MIR 3 262 0 181 324 143 9 chr1 18894118 18894223 -263299441 + MIR SINE MIR 31 149 -113 2213 101 16 0 chr1 18894443 18894750 -263298914 + AluSx SINE Alu 1 312 0 382 118 79 13 chr1 18894763 18894839 -263298825 + MER53 DNA DNA 109 189 0 540 261 56 11 chr1 18894957 18895137 -263298527 + MIR SINE MIR 2 189 -73 258 341 87 31 chr1 18895990 18896219 -263297445 + L2 LINE L2 2934 3175 -97 1466 163 110 25 chr1 18896355 18896637 -263297027 + AluJb SINE Alu 1 306 -6 262 247 14 27 chr1 18896764 18896837 -263296827 + (TAA)n Simple_repeat Simple_repeat 1 72 0 694 269 93 23 chr1 18896856 18897072 -263296592 - MIR SINE MIR -3 259 29 1063 173 0 0 chr1 18897271 18897433 -263296231 - FRAM SINE Alu -21 155 1 1906 179 0 0 chr1 18897448 18897755 -263295909 - AluJo SINE Alu -5 307 1 1172 280 71 26 chr1 18897804 18898229 -263295435 - L2 LINE L2 -13 3300 2857 207 0 0 0 chr1 18898268 18898291 -263295373 + (CA)n Simple_repeat Simple_repeat 1 23 0 220 287 96 0 chr1 18898658 18898752 -263294912 + MIR3 SINE MIR 11 113 -95 228 330 11 11 chr1 18899154 18899242 -263294422 + (TCCA)n Simple_repeat Simple_repeat 1 88 0 495 310 29 47 chr1 18899338 18899377 -263294287 - MIR SINE MIR -25 237 199 1132 168 32 41 chr1 18899377 18899597 -263294067 + MER20 DNA MER1_type 1 218 -1 495 310 29 47 chr1 18899597 18899784 -263293880 - MIR SINE MIR -63 199 14 184 159 23 23 chr1 18900836 18900880 -263292784 + L2 LINE L2 2977 3020 -252 450 0 0 0 chr1 18902260 18902310 -263291354 + (TG)n Simple_repeat Simple_repeat 2 51 0 310 299 122 15 chr1 18902460 18902606 -263291058 + MIR SINE MIR 2 161 -47 269 255 50 113 chr1 18903911 18904052 -263289612 + L2 LINE L2 3180 3311 -2 2017 130 3 3 chr1 18904115 18904423 -263289241 + AluSx SINE Alu 1 308 -4 634 243 40 50 chr1 18904615 18904649 -263289015 - MIR SINE MIR -32 230 197 1903 156 3 13 chr1 18904649 18904819 -263288845 - AluJb SINE Alu -8 304 137 2226 86 10 3 chr1 18904819 18905120 -263288544 - AluSq SINE Alu -10 303 1 1903 156 3 13 chr1 18905120 18905256 -263288408 - AluJb SINE Alu -175 137 1 634 243 40 50 chr1 18905256 18905423 -263288241 - MIR SINE MIR -65 197 31 206 294 92 46 chr1 18906678 18906713 -263286951 - MIR SINE MIR -55 207 175 2162 190 62 56 chr1 18906713 18907214 -263286450 + MLT1D LTR MaLR 1 504 -1 206 294 92 46 chr1 18907214 18907287 -263286377 - MIR SINE MIR -87 175 94 542 330 72 4 chr1 18907548 18907784 -263285880 - MIR SINE MIR -1 261 10 341 301 29 87 chr1 18907809 18907886 -263285778 + MIR SINE MIR 51 131 -131 2096 108 13 23 chr1 18907886 18908193 -263285471 - AluSx SINE Alu -8 304 1 341 301 29 87 chr1 18908193 18908288 -263285376 + MIR SINE MIR 131 213 -49 506 265 181 84 chr1 18908437 18908686 -263284978 - L1ME4a LINE L1 -1 6120 5848 523 266 36 14 chr1 18909173 18909312 -263284352 - MIR SINE MIR -27 235 94 304 285 234 0 chr1 18909298 18909456 -263284208 - MIR SINE MIR -48 214 20 * 311 256 226 15 chr1 18909479 18909612 -263284052 + MER5B DNA MER1_type 4 164 -14 196 158 79 0 chr1 18909612 18909650 -263284014 + MIR3 SINE MIR 155 195 -13 1021 94 0 82 chr1 18910167 18910337 -263283327 + AluSx SINE Alu 1 156 -156 263 274 24 24 chr1 18911029 18911113 -263282551 + MIR SINE MIR 14 97 -165 2277 137 3 62 chr1 18911444 18911511 -263282153 - MLT1A1 LTR MaLR 0 365 296 2076 137 0 0 chr1 18911511 18911804 -263281860 - AluSx SINE Alu -13 299 7 2277 137 3 62 chr1 18911804 18912124 -263281540 - MLT1A1 LTR MaLR -69 296 1 459 284 60 51 chr1 18912299 18912470 -263281194 + MIR SINE MIR 15 190 -72 1968 137 40 0 chr1 18912470 18912770 -263280894 + AluSx SINE Alu 1 312 0 459 284 60 51 chr1 18912770 18912813 -263280851 + MIR SINE MIR 190 231 -31 860 231 16 0 chr1 18913230 18913412 -263280252 - MER3 DNA MER1_type 0 209 25 313 319 11 0 chr1 18913456 18913550 -263280114 + MIR SINE MIR 21 115 -147 1989 238 41 69 chr1 18913834 18914181 -263279483 - L1MD3 LINE L1 -2 7993 7673 2259 114 0 0 chr1 18914181 18914488 -263279176 + AluSx SINE Alu 6 312 0 1989 238 41 69 chr1 18914488 18914824 -263278840 - L1MD3 LINE L1 -322 7673 7329 1953 158 7 0 chr1 18914852 18915155 -263278509 - AluSx SINE Alu -7 305 1 316 321 154 15 chr1 18915940 18916345 -263277319 - L2 LINE L2 -236 3036 2578 238 320 39 12 chr1 18917162 18917290 -263276374 + MIR SINE MIR 15 146 -62 220 258 0 32 chr1 18917624 18917686 -263275978 - MIR SINE MIR -133 75 16 191 364 200 0 chr1 18918619 18918729 -263274935 + MIR SINE MIR 61 192 -70 347 269 48 0 chr1 18918738 18918842 -263274822 + MIR SINE MIR 106 214 -48 220 310 168 0 chr1 18919538 18919651 -263274013 - MIR SINE MIR -20 242 111 2251 115 0 0 chr1 18919691 18920003 -263273661 - AluSx SINE Alu 0 312 1 22 0 0 0 chr1 18920010 18920032 -263273632 + AT_rich Low_complexity Low_complexity 1 22 0 342 304 94 8 chr1 18920083 18920269 -263273395 - MIR3 SINE MIR -50 212 13 2020 144 0 0 chr1 18920602 18920894 -263272770 + AluJo SINE Alu 1 292 -20 198 0 0 0 chr1 18921439 18921461 -263272203 + (GGGA)n Simple_repeat Simple_repeat 4 25 0 402 306 83 0 chr1 18921609 18921789 -263271875 - MER117 DNA MER1_type -2 195 1 1988 138 6 6 chr1 18922181 18922492 -263271172 - AluSx SINE Alu -1 311 1 218 305 53 46 chr1 18922818 18922949 -263270715 - L2 LINE L2 -15 3257 3126 473 263 53 0 chr1 18923536 18923669 -263269995 - MER5A DNA MER1_type 0 189 50 243 242 25 108 chr1 18924784 18924904 -263268760 - MIR SINE MIR -53 209 100 501 62 0 0 chr1 18924943 18925008 -263268656 + (TCCA)n Simple_repeat Simple_repeat 1 65 0 509 252 189 18 chr1 18925039 18925261 -263268403 - MIR SINE MIR 0 262 3 279 0 0 0 chr1 18925387 18925418 -263268246 + (TCCA)n Simple_repeat Simple_repeat 2 32 0 380 299 30 6 chr1 18925440 18925516 -263268148 + (TCCA)n Simple_repeat Simple_repeat 4 77 -97 822 221 96 40 chr1 18925516 18925715 -263267949 - MER63A DNA MER1_type 0 210 1 380 299 30 6 chr1 18925715 18925805 -263267859 + (TCCA)n Simple_repeat Simple_repeat 77 174 0 243 229 0 0 chr1 18925836 18925897 -263267767 + (TCCA)n Simple_repeat Simple_repeat 2 62 0 283 356 22 0 chr1 18925910 18926045 -263267619 + (TCCA)n Simple_repeat Simple_repeat 3 140 0 244 290 129 0 chr1 18926049 18926142 -263267522 - L2 LINE L2 0 3272 3168 470 290 8 15 chr1 18926854 18926985 -263266679 - MER5A DNA MER1_type -4 185 56 575 326 12 6 chr1 18927174 18927346 -263266318 + MIR SINE MIR 15 187 -75 186 308 56 56 chr1 18927481 18927588 -263266076 - MIR SINE MIR -154 108 2 978 221 50 0 chr1 18928435 18928634 -263265030 - MER3 DNA MER1_type 0 209 1 285 290 88 20 chr1 18929064 18929213 -263264451 - MIR SINE MIR -62 146 30 223 353 131 19 chr1 18929966 18930286 -263263378 - L2 LINE L2 0 3272 2917 439 326 53 21 chr1 18930310 18930497 -263263167 - MIR SINE MIR -5 257 65 211 374 23 29 chr1 18930482 18930653 -263263011 - L2 LINE L2 -436 2878 2709 * 347 241 13 0 chr1 18930663 18930742 -263262922 - L2 LINE L2 -2 3311 3232 373 237 82 10 chr1 18931095 18931192 -263262472 + MIR SINE MIR 81 184 -78 201 129 0 0 chr1 18931899 18931930 -263261734 + (TCC)n Simple_repeat Simple_repeat 2 32 0 2055 98 3 57 chr1 18933316 18933633 -263260031 + AluSx SINE Alu 1 300 -12 405 209 23 0 chr1 18933800 18933886 -263259778 + MER20 DNA MER1_type 106 193 -26 399 259 28 56 chr1 18934231 18934374 -263259290 + MER5B DNA MER1_type 8 146 -32 278 278 169 68 chr1 18934446 18934641 -263259023 + L3 LINE CR1 1142 1378 -199 2224 113 0 0 chr1 18934641 18934942 -263258722 - AluSx SINE Alu -11 301 1 278 278 169 68 chr1 18934942 18935041 -263258623 + L3 LINE CR1 1378 1466 -111 330 273 153 7 chr1 18936982 18937132 -263256532 + MIR3 SINE MIR 12 183 -25 192 329 58 15 chr1 18937525 18937662 -263256002 + MIR3 SINE MIR 33 175 -33 2335 158 69 2 chr1 18940056 18940537 -263253127 - L1MB3 LINE L1 -35 6148 5636 464 303 24 36 chr1 18941171 18941336 -263252328 + MIR SINE MIR 15 177 -85 2040 120 27 0 chr1 18941646 18941938 -263251726 + AluSx SINE Alu 12 311 -1 312 294 33 0 chr1 18942259 18942351 -263251313 + L3 LINE CR1 1297 1391 -186 445 262 68 44 chr1 18942545 18942587 -263251077 + Charlie8 DNA MER1_type 25 65 -276 1841 142 0 21 chr1 18942587 18942906 -263250758 - AluJb SINE Alu 0 313 1 445 262 68 44 chr1 18942906 18943068 -263250596 + Charlie8 DNA MER1_type 65 235 -106 336 335 108 0 chr1 18944194 18944361 -263249303 + MIR SINE MIR 46 230 -32 598 252 26 0 chr1 18945257 18945408 -263248256 + MER45A DNA AcHobo 24 178 0 322 294 67 17 chr1 18945454 18945573 -263248091 - MIR SINE MIR -61 147 23 181 292 0 0 chr1 18945783 18945831 -263247833 + MIR SINE MIR 104 151 -57 250 304 63 0 chr1 18946347 18946426 -263247238 - L3b LINE CR1 -197 1386 1303 2155 97 3 29 chr1 18946918 18947227 -263246437 - AluSx SINE Alu -7 305 5 202 194 0 0 chr1 18947671 18947707 -263245957 + (CTCA)n Simple_repeat Simple_repeat 1 36 0 183 310 23 35 chr1 18947815 18947902 -263245762 + MIR SINE MIR 51 136 -72 227 320 117 5 chr1 18949021 18949227 -263244437 + L2 LINE L2 2835 3063 -250 411 348 71 9 chr1 18950592 18950802 -263242862 + L2 LINE L2 3077 3299 -14 2317 63 0 20 chr1 18951080 18951383 -263242281 - AluY SINE Alu -14 297 1 251 283 0 0 chr1 18952410 18952470 -263241194 + L2 LINE L2 3254 3313 0 180 316 26 26 chr1 18952645 18952721 -263240943 + L2 LINE L2 3195 3270 -2 325 315 107 0 chr1 18952765 18952914 -263240750 - MIR SINE MIR -74 188 24 238 255 0 0 chr1 18953328 18953375 -263240289 - L2 LINE L2 -5 3267 3221 368 184 0 138 chr1 18954054 18954126 -263239538 + MIR3 SINE MIR 81 135 -73 1166 177 22 9 chr1 18954126 18954352 -263239312 + L1MB7 LINE L1 5956 6184 0 368 184 0 138 chr1 18954352 18954388 -263239276 + MIR3 SINE MIR 135 174 -34 584 318 27 9 chr1 18954460 18954680 -263238984 - MIR SINE MIR -37 225 2 2009 102 29 0 chr1 18954929 18955203 -263238461 + AluY SINE Alu 1 325 0 315 23 23 0 chr1 18955203 18955246 -263238418 + (CAAAA)n Simple_repeat Simple_repeat 2 75 0 2415 92 0 6 chr1 18955276 18955590 -263238074 + AluSx SINE Alu 1 312 0 218 329 24 0 chr1 18955647 18955732 -263237932 - L2 LINE L2 -47 3266 3180 377 307 176 8 chr1 18955840 18956165 -263237499 - L2 LINE L2 -321 2992 2624 355 265 109 41 chr1 18956945 18957092 -263236572 + MIR3 SINE MIR 20 176 -32 567 328 39 26 chr1 18957127 18957356 -263236308 + MIR SINE MIR 2 233 -29 290 359 55 7 chr1 18958028 18958173 -263235491 + MIR3 SINE MIR 48 199 -9 330 331 90 0 chr1 18958442 18958587 -263235077 - MIR SINE MIR -59 203 46 269 329 94 28 chr1 18960380 18960593 -263233071 - L2 LINE L2 -427 2887 2661 363 348 77 23 chr1 18960768 18960989 -263232675 + MIR SINE MIR 21 253 -9 612 331 95 14 chr1 18961121 18961417 -263232247 - L2 LINE L2 0 3313 2994 547 297 7 7 chr1 18961771 18961919 -263231745 - MIR SINE MIR -56 206 59 181 354 10 40 chr1 18962354 18962453 -263231211 + MIR SINE MIR 52 147 -61 409 318 128 9 chr1 18962667 18962878 -263230786 - MIR SINE MIR -12 250 15 531 322 128 37 chr1 18963121 18963707 -263229957 - L2 LINE L2 0 3313 2640 1959 129 10 22 chr1 18963707 18964018 -263229646 + AluJb SINE Alu 1 307 -5 2162 134 0 0 chr1 18964030 18964335 -263229329 + AluSx SINE Alu 1 305 -7 740 269 78 59 chr1 18964411 18964820 -263228844 - MER96B DNA MER1_type 0 417 1 265 341 23 15 chr1 18965985 18966117 -263227547 + MIR SINE MIR 116 248 -14 256 290 20 40 chr1 18966568 18966668 -263226996 + MIR SINE MIR 162 259 -3 574 294 19 6 chr1 18967290 18967450 -263226214 + MIR3 SINE MIR 15 176 -32 339 253 23 0 chr1 18967832 18967919 -263225745 + MIR SINE MIR 61 149 -59 298 283 17 75 chr1 18968033 18968153 -263225511 - MER5A DNA MER1_type -10 179 67 200 271 34 0 chr1 18968414 18968473 -263225191 - L2 LINE L2 -5 3267 3207 479 148 11 0 chr1 18968820 18968908 -263224756 + (TCCA)n Simple_repeat Simple_repeat 1 89 0 713 158 7 0 chr1 18968925 18969064 -263224600 + (TCCA)n Simple_repeat Simple_repeat 2 141 0 205 294 106 0 chr1 18969064 18969149 -263224515 - L2 LINE L2 0 3313 3220 181 234 106 0 chr1 18970449 18970496 -263223168 - L3 LINE CR1 -99 1478 1427 281 372 115 8 chr1 18970518 18970752 -263222912 + MIR SINE MIR 1 259 -3 1282 246 124 3 chr1 18971541 18971911 -263221753 - MLT1C LTR MaLR -52 415 1 195 307 53 27 chr1 18971962 18972037 -263221627 - MIR3 SINE MIR -20 188 112 831 323 82 15 chr1 18972183 18972585 -263221079 - L2 LINE L2 -12 3301 2873 188 260 156 0 chr1 18973492 18973569 -263220095 - MIR3 SINE MIR -13 195 107 454 304 123 0 chr1 18973857 18974028 -263219636 + MIR SINE MIR 6 197 -65 411 306 33 0 chr1 18974508 18974629 -263219035 - MIR3 SINE MIR 0 208 84 2159 82 28 0 chr1 18974675 18974957 -263218707 - AluSx SINE Alu -22 290 1 224 366 52 6 chr1 18975478 18975672 -263217992 + MIR3 SINE MIR 3 205 -57 414 256 40 0 chr1 18975696 18975821 -263217843 + MIR SINE MIR 78 207 -55 359 269 83 24 chr1 18975855 18976082 -263217582 - MIR SINE MIR -9 253 11 2168 110 0 7 chr1 18976852 18977160 -263216504 + AluSx SINE Alu 4 309 -3 608 259 9 60 chr1 18977262 18977478 -263216186 - MIR3 SINE MIR -1 207 3 391 306 30 101 chr1 18977478 18977738 -263215926 + L2 LINE L2 3032 3272 0 218 239 14 0 chr1 18977738 18977809 -263215855 + GA-rich Low_complexity Low_complexity 1 72 0 184 301 169 0 chr1 18978895 18978978 -263214686 - MIR3 SINE MIR 0 208 112 2021 192 31 94 chr1 18979219 18979771 -263213893 - MLT2B1 LTR ERVL 0 520 4 209 255 47 66 chr1 18980801 18980907 -263212757 - L2 LINE L2 -37 3235 3132 483 364 22 22 chr1 18981462 18981690 -263211974 + MIR SINE MIR 34 261 -1 1076 197 34 4 chr1 18982868 18983102 -263210562 - MIR SINE MIR -6 256 16 220 217 116 0 chr1 18983222 18983291 -263210373 + L2 LINE L2 3170 3246 -26 270 278 32 136 chr1 18983297 18983642 -263210022 - L2 LINE L2 -42 3230 2922 442 300 96 9 chr1 18984344 18984564 -263209100 + L2 LINE L2 2907 3145 -168 288 269 25 67 chr1 18985307 18985426 -263208238 + L2 LINE L2 3149 3262 -10 233 381 0 0 chr1 18987006 18987103 -263206561 + MIR SINE MIR 141 237 -25 277 325 159 8 chr1 18987283 18987409 -263206255 + MIR SINE MIR 117 261 -1 1880 183 35 12 chr1 18988199 18988538 -263205126 + MER7A DNA MER2_type 2 346 0 504 328 0 0 chr1 18988963 18989143 -263204521 + (TG)n Simple_repeat Simple_repeat 1 180 0 238 400 0 0 chr1 18989242 18989412 -263204252 + (TG)n Simple_repeat Simple_repeat 1 170 0 339 374 0 0 chr1 18989475 18989638 -263204026 + (TG)n Simple_repeat Simple_repeat 1 163 0 285 366 6 0 chr1 18989737 18989901 -263203763 + (TG)n Simple_repeat Simple_repeat 1 165 0 * 312 335 6 6 chr1 18989817 18989993 -263203671 + G-rich Low_complexity Low_complexity 3 178 0 344 329 20 40 chr1 18991157 18991306 -263202358 - MIR SINE MIR -10 252 107 243 0 0 0 chr1 18991527 18991554 -263202110 + (AGCTG)n Simple_repeat Simple_repeat 1 27 0 2208 110 3 0 chr1 18991943 18992244 -263201420 - AluSq SINE Alu -11 302 1 190 280 0 0 chr1 18992691 18992741 -263200923 - MIR SINE MIR -118 144 95 240 283 101 29 chr1 18992903 18992940 -263200724 + MIR SINE MIR 6 39 -223 554 248 9 0 chr1 18992940 18993053 -263200611 + MER81 DNA DNA 1 114 0 240 283 101 29 chr1 18993053 18993153 -263200511 + MIR SINE MIR 39 153 -109 330 299 110 32 chr1 18993243 18993397 -263200267 + MIR SINE MIR 47 212 -50 255 74 0 56 chr1 18993582 18993636 -263200028 + (CCCTG)n Simple_repeat Simple_repeat 3 53 0 205 250 38 50 chr1 18994135 18994215 -263199449 - MIR SINE MIR -77 185 107 23 0 0 0 chr1 18994269 18994292 -263199372 + AT_rich Low_complexity Low_complexity 1 23 0 2028 109 42 0 chr1 18994313 18994598 -263199066 - AluSq SINE Alu -16 297 1 1713 303 105 24 chr1 18994607 18995689 -263197975 - L1MC4 LINE L1 0 8042 6873 274 355 135 15 chr1 18995714 18996055 -263197609 - L1MC4a LINE L1 -1150 6658 6277 346 232 12 0 chr1 18996059 18996141 -263197523 - MER58A DNA MER1_type -19 88 6 249 33 0 0 chr1 18997143 18997173 -263196491 + (CTGGGG)n Simple_repeat Simple_repeat 3 32 0 180 111 0 0 chr1 18998349 18998376 -263195288 + (TCCCC)n Simple_repeat Simple_repeat 5 31 0 768 272 197 21 chr1 18998716 18999252 -263194412 + L2 LINE L2 2671 3311 -2 347 262 49 49 chr1 18999576 18999698 -263193966 - L1MDa LINE L1 -4041 2499 2378 231 301 150 0 chr1 18999845 18999958 -263193706 - L2 LINE L2 0 3272 3143 311 256 0 12 chr1 19000512 19000598 -263193066 - HAL1 LINE L1 -178 2329 2245 605 247 109 0 chr1 19000742 19000916 -263192748 - MER63A DNA MER1_type -15 195 3 186 314 0 43 chr1 19001414 19001484 -263192180 - MIR3 SINE MIR -133 75 9 332 343 83 22 chr1 19002521 19002702 -263190962 - MIR SINE MIR -48 214 23 270 287 148 0 chr1 19002725 19002847 -263190817 + MIR SINE MIR 51 190 -72 180 103 35 0 chr1 19003063 19003092 -263190572 + CT-rich Low_complexity Low_complexity 3 32 0 294 374 15 46 chr1 19003417 19003612 -263190052 - MIR SINE MIR -55 207 19 * 338 318 38 38 chr1 19003557 19003689 -263189975 + MIR3 SINE MIR 28 159 -49 218 105 26 0 chr1 19005157 19005195 -263188469 + (TA)n Simple_repeat Simple_repeat 1 39 0 304 309 15 66 chr1 19005195 19005291 -263188373 - L1MDa LINE L1 -4384 2154 2028 237 65 0 0 chr1 19005291 19005322 -263188342 + (TCCA)n Simple_repeat Simple_repeat 4 34 0 440 288 124 6 chr1 19005324 19005501 -263188163 - L2 LINE L2 0 3313 3116 785 316 161 16 chr1 19005792 19006462 -263187202 + L2 LINE L2 2273 3043 -229 648 209 7 0 chr1 19006610 19006749 -263186915 - MER3 DNA MER1_type -56 153 14 249 322 35 0 chr1 19006749 19006836 -263186828 + L2 LINE L2 3194 3283 -30 207 296 99 0 chr1 19007223 19007304 -263186360 + MER5A DNA MER1_type 3 91 -98 523 208 152 0 chr1 19007612 19007737 -263185927 - MER7A DNA MER2_type -204 142 1 513 290 35 0 chr1 19007737 19007882 -263185782 - MIR SINE MIR -105 157 8 197 286 0 0 chr1 19008930 19008979 -263184685 + MIR SINE MIR 107 155 -107 2088 99 3 54 chr1 19009381 19009695 -263183969 + AluSx SINE Alu 1 298 -14 276 371 111 19 chr1 19009749 19010064 -263183600 - L2 LINE L2 -1 3271 2928 235 302 23 0 chr1 19011184 19011270 -263182394 + (TG)n Simple_repeat Simple_repeat 2 89 0 495 253 96 6 chr1 19011485 19011663 -263182001 - MER3 DNA MER1_type 0 209 16 296 341 165 6 chr1 19012222 19012392 -263181272 - L2 LINE L2 0 3272 3076 226 321 14 64 chr1 19012796 19012936 -263180728 + MIR SINE MIR 20 152 -56 406 337 72 10 chr1 19013375 19013568 -263180096 - MIR SINE MIR -51 211 7 747 268 145 25 chr1 19013673 19014031 -263179633 - L2 LINE L2 -2 3311 2911 1532 270 168 22 chr1 19014058 19014902 -263178762 - L2 LINE L2 -550 2764 1798 2158 96 17 0 chr1 19015519 19015811 -263177853 - AluSx SINE Alu -15 297 1 588 263 48 0 chr1 19016516 19016702 -263176962 - LTR16C LTR ERVL -22 469 275 1390 213 52 55 chr1 19016993 19017201 -263176463 - MLT1A1 LTR MaLR 0 365 157 2253 100 0 19 chr1 19017201 19017510 -263176154 - AluSx SINE Alu -9 303 1 1390 213 52 55 chr1 19017510 19017667 -263175997 - MLT1A1 LTR MaLR -208 157 1 1898 158 64 25 chr1 19017759 19017936 -263175728 + THE1C LTR MaLR 1 170 -205 2356 76 0 3 chr1 19017936 19018237 -263175427 - AluY SINE Alu -11 300 1 1898 158 64 25 chr1 19018237 19018420 -263175244 + THE1C LTR MaLR 170 375 0 202 333 178 22 chr1 19018477 19018567 -263175097 - L2 LINE L2 -23 3249 3146 373 277 80 0 chr1 19018646 19018783 -263174881 + MIR SINE MIR 34 181 -81 351 105 0 0 chr1 19018984 19019041 -263174623 + (CTGGGG)n Simple_repeat Simple_repeat 1 57 0 1143 164 25 5 chr1 19019436 19019637 -263174027 - AluJo SINE Alu -107 205 1 227 328 0 0 chr1 19020406 19020473 -263173191 + MIR SINE MIR 36 102 -106 482 247 37 26 chr1 19020548 19020710 -263172954 - MIR SINE MIR -62 146 16 436 317 56 0 chr1 19020837 19020979 -263172685 + MIR SINE MIR 111 260 -2 2134 114 7 0 chr1 19021082 19021379 -263172285 - AluSx SINE Alu -12 300 2 393 302 27 34 chr1 19021645 19021794 -263171870 - L2 LINE L2 -4 3268 3121 1819 170 6 3 chr1 19021796 19022131 -263171533 + AluJo SINE Alu 1 336 0 431 307 50 7 chr1 19022225 19022365 -263171299 + MIR SINE MIR 105 250 -12 2008 71 0 8 chr1 19022372 19022662 -263171002 - AluY SINE Alu 0 311 37 555 345 29 13 chr1 19023540 19023608 -263170056 - MIR SINE MIR -2 260 195 2178 158 162 2 chr1 19023608 19024027 -263169637 - LTR19A LTR ERV1 0 486 1 555 345 29 13 chr1 19024027 19024203 -263169461 - MIR SINE MIR -67 195 13 186 313 0 0 chr1 19024474 19024538 -263169126 + L2 LINE L2 3199 3262 -10 515 286 229 30 chr1 19024556 19024996 -263168668 + MLT1H1 LTR MaLR 4 531 -24 863 279 65 40 chr1 19025094 19025539 -263168125 + MLT1K LTR MaLR 122 577 -11 462 281 22 15 chr1 19026491 19026626 -263167038 - MIR3 SINE MIR -59 149 14 353 287 11 0 chr1 19026808 19026895 -263166769 + MIR SINE MIR 36 123 -85 370 308 111 34 chr1 19027038 19027093 -263166571 - MIR SINE MIR -13 249 200 2288 103 6 0 chr1 19027093 19027404 -263166260 - AluSq SINE Alu 0 313 1 370 308 111 34 chr1 19027404 19027556 -263166108 - MIR SINE MIR -62 200 26 270 81 0 0 chr1 19028440 19028477 -263165187 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 344 289 0 21 chr1 19028510 19028607 -263165057 - L2 LINE L2 -29 3284 3190 474 270 104 13 chr1 19028731 19028914 -263164750 - MIR SINE MIR -60 202 6 650 261 18 0 chr1 19029327 19029492 -263164172 - MIR SINE MIR -80 182 15 1720 167 0 46 chr1 19029571 19029895 -263163769 + AluJo SINE Alu 1 309 -3 750 104 8 22 chr1 19030136 19030270 -263163394 + (TTCC)n Simple_repeat Simple_repeat 2 133 0 1933 136 30 0 chr1 19030270 19030572 -263163092 - AluSx SINE Alu -1 311 1 239 313 42 42 chr1 19030640 19030736 -263162928 + L2 LINE L2 3122 3217 -55 300 209 7 122 chr1 19031462 19031601 -263162063 - LTR16A1 LTR ERVL -70 387 265 489 339 66 16 chr1 19031913 19032096 -263161568 - MIR SINE MIR -19 243 52 235 185 0 56 chr1 19032153 19032207 -263161457 - L2 LINE L2 -192 3080 3030 224 370 0 0 chr1 19032254 19032335 -263161329 - L2 LINE L2 -2 3311 3231 439 65 0 0 chr1 19032532 19032594 -263161070 + L1PB1 LINE L1 6089 6150 -1 180 0 0 0 chr1 19032626 19032646 -263161018 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 224 308 77 8 chr1 19032705 19032822 -263160842 - MIR SINE MIR -78 184 60 292 322 17 26 chr1 19033174 19033289 -263160375 + MIR SINE MIR 30 143 -65 218 345 12 24 chr1 19033512 19033596 -263160068 + MIR SINE MIR 50 132 -76 278 316 55 60 chr1 19034169 19034387 -263159277 + MIR SINE MIR 17 233 -29 623 261 20 64 chr1 19034620 19034881 -263158783 - MIR SINE MIR -2 260 5 849 253 56 51 chr1 19034967 19035391 -263158273 - MLT1K LTR MaLR -17 571 130 238 290 43 0 chr1 19035496 19035565 -263158099 - MIR SINE MIR -92 170 99 182 292 42 42 chr1 19035531 19035603 -263158061 + L3 LINE CR1 1371 1442 -135 * 2187 98 0 0 chr1 19035808 19036129 -263157535 + AluSp SINE Alu 1 321 0 355 332 31 26 chr1 19036190 19036383 -263157281 + L1ME LINE L1 5545 5738 -383 679 303 131 0 chr1 19037095 19037316 -263156348 - MIR SINE MIR 0 262 13 381 316 97 0 chr1 19037731 19037886 -263155778 - MIR SINE MIR -42 220 51 2317 101 3 0 chr1 19038098 19038405 -263155259 + AluSq SINE Alu 1 308 -5 422 333 13 7 chr1 19038429 19038579 -263155085 + MIR SINE MIR 3 153 -109 347 263 171 16 chr1 19038637 19038825 -263154839 - MIR SINE MIR -13 249 19 2015 144 0 0 chr1 19039027 19039319 -263154345 - AluSx SINE Alu -20 292 1 261 286 19 38 chr1 19039630 19039735 -263153929 - LTR16C LTR ERVL -2 489 387 2336 186 57 15 chr1 19040073 19040547 -263153117 + LTR42 LTR ERVL 2 495 0 1986 161 0 0 chr1 19040694 19040999 -263152665 - AluSx SINE Alu -7 305 1 1089 90 11 11 chr1 19041083 19041261 -263152403 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 285 75 0 0 chr1 19041264 19041304 -263152360 + (TCCC)n Simple_repeat Simple_repeat 1 40 0 1285 195 46 23 chr1 19041304 19041359 -263152305 - AluJo SINE Alu -2 310 258 2809 76 3 6 chr1 19041359 19041715 -263151949 - THE1A LTR MaLR 0 355 1 1285 195 46 23 chr1 19041715 19041962 -263151702 - AluJo SINE Alu -54 258 1 404 360 27 0 chr1 19041966 19042113 -263151551 - MIR SINE MIR -64 198 48 319 295 20 86 chr1 19042616 19042780 -263150884 - MIR3 SINE MIR -29 179 28 311 286 57 7 chr1 19043261 19043401 -263150263 + MIR3 SINE MIR 59 205 -3 664 313 17 26 chr1 19043667 19043897 -263149767 + MIR SINE MIR 7 234 -28 858 266 100 31 chr1 19043915 19044376 -263149288 + MLT1H LTR MaLR 1 542 0 263 280 51 13 chr1 19044411 19044500 -263149164 + MIR SINE MIR 64 154 -65 413 335 94 0 chr1 19044541 19044732 -263148932 + MIR SINE MIR 33 241 -21 336 178 44 22 chr1 19044732 19044822 -263148842 - MLT1G3 LTR MaLR 0 595 499 485 204 110 37 chr1 19044971 19045174 -263148490 - MLT1G3 LTR MaLR -169 413 149 1972 98 11 0 chr1 19045182 19045446 -263148218 + AluSx SINE Alu 14 280 -32 279 0 0 0 chr1 19045450 19045481 -263148183 + (CA)n Simple_repeat Simple_repeat 2 32 0 1412 65 0 0 chr1 19045482 19045652 -263148012 + AluY SINE Alu 1 170 -141 1517 71 0 38 chr1 19045652 19045864 -263147800 + AluSg/x SINE Alu 105 308 -2 231 246 0 0 chr1 19045958 19046015 -263147649 - MLT1G3 LTR MaLR -459 83 27 269 230 14 54 chr1 19046078 19046152 -263147512 + MIR3 SINE MIR 130 200 -8 469 258 24 16 chr1 19046491 19046615 -263147049 - MIR SINE MIR -136 126 2 407 293 23 26 chr1 19046763 19046956 -263146708 + MIR SINE MIR 15 247 -15 448 316 58 21 chr1 19047648 19047838 -263145826 - MIR SINE MIR -16 246 50 2055 111 0 20 chr1 19047851 19048157 -263145507 + AluSx SINE Alu 13 312 0 415 279 49 0 chr1 19048175 19048297 -263145367 - MIR3 SINE MIR -15 193 66 632 310 57 62 chr1 19048811 19049217 -263144447 + L2 LINE L2 2856 3259 -13 499 367 31 0 chr1 19049623 19049849 -263143815 - MIR SINE MIR -12 250 18 507 366 42 20 chr1 19050861 19051112 -263142552 + MIR SINE MIR 9 262 0 258 243 43 0 chr1 19051151 19051221 -263142443 - MIR SINE MIR -75 133 61 788 157 8 8 chr1 19051221 19051355 -263142309 - AluJo SINE Alu -178 134 1 430 269 0 10 chr1 19051405 19051509 -263142155 + MIR SINE MIR 41 143 -65 299 357 29 14 chr1 19051548 19051688 -263141976 - MIR3 SINE MIR -13 195 54 2312 85 7 0 chr1 19051903 19052208 -263141456 + AluSc SINE Alu 1 307 -2 847 186 114 0 chr1 19052707 19052874 -263140790 - MER5A DNA MER1_type -3 186 1 506 256 85 43 chr1 19052893 19053057 -263140607 - MER5B DNA MER1_type -4 174 4 217 217 165 61 chr1 19053226 19053341 -263140323 - L2 LINE L2 -1 3271 3145 189 0 0 0 chr1 19053724 19053745 -263139919 + (TC)n Simple_repeat Simple_repeat 2 22 0 1829 156 0 7 chr1 19053745 19054034 -263139630 - AluJo SINE Alu -23 289 3 390 74 0 0 chr1 19054628 19054682 -263138982 + (TTCA)n Simple_repeat Simple_repeat 2 55 0 231 276 92 0 chr1 19054707 19054783 -263138881 - L2 LINE L2 -68 3204 3122 203 203 0 0 chr1 19055553 19055599 -263138065 + L3b LINE CR1 1340 1385 -198 2067 123 19 3 chr1 19055599 19055907 -263137757 + AluSq SINE Alu 1 313 0 872 220 56 33 chr1 19056080 19056294 -263137370 - MER58A DNA MER1_type 0 224 6 258 246 0 0 chr1 19056718 19056779 -263136885 + G-rich Low_complexity Low_complexity 4 64 0 389 295 155 36 chr1 19057478 19057671 -263135993 + MIR SINE MIR 6 221 -41 347 273 41 33 chr1 19057837 19057958 -263135706 + L2 LINE L2 3191 3312 -1 438 250 69 0 chr1 19058667 19058783 -263134881 - MIR SINE MIR -79 183 60 257 391 20 20 chr1 19059007 19059158 -263134506 + MIR3 SINE MIR 58 208 0 506 276 59 13 chr1 19059430 19059582 -263134082 + MIR SINE MIR 8 166 -96 3472 65 32 0 chr1 19059582 19060045 -263133619 + LTR8 LTR ERV1 110 587 -104 231 114 0 0 chr1 19060045 19060089 -263133575 + (A)n Simple_repeat Simple_repeat 1 44 0 209 213 115 0 chr1 19060091 19060152 -263133512 + MIR SINE MIR 151 218 -44 1613 160 42 29 chr1 19060230 19060543 -263133121 - MLT1B LTR MaLR -73 317 1 298 289 0 52 chr1 19060543 19060630 -263133034 + Charlie8 DNA MER1_type 191 272 -2145 390 213 138 0 chr1 19060633 19060727 -263132937 + MER81 DNA DNA 1 107 -7 2092 124 7 0 chr1 19060730 19061029 -263132635 - AluSx SINE Alu -8 304 4 277 322 183 0 chr1 19061647 19061762 -263131902 + MIR SINE MIR 28 163 -99 2392 73 0 6 chr1 19061849 19062162 -263131502 - AluY SINE Alu 0 311 1 356 209 0 0 chr1 19062164 19062231 -263131433 - MER5A DNA MER1_type -115 74 8 349 256 6 11 chr1 19062323 19062503 -263131161 + (CAT)n Simple_repeat Simple_repeat 1 179 0 197 207 52 35 chr1 19062555 19062613 -263131051 - MIR SINE MIR -60 148 90 211 299 0 52 chr1 19062649 19062726 -263130938 + MIR3 SINE MIR 11 83 -125 234 211 123 0 chr1 19062746 19062803 -263130861 - MIR3 SINE MIR -28 180 117 612 292 102 38 chr1 19062820 19062959 -263130705 + MIR SINE MIR 1 163 -99 2063 223 70 49 chr1 19062959 19063488 -263130176 + MLT1F LTR MaLR 1 540 -2 612 292 102 38 chr1 19063488 19063584 -263130080 + MIR SINE MIR 163 251 -11 306 50 0 0 chr1 19063869 19063909 -263129755 + (TG)n Simple_repeat Simple_repeat 2 41 0 431 262 48 8 chr1 19064348 19064474 -263129190 - MIR3 SINE MIR -36 172 42 479 294 8 0 chr1 19065071 19065197 -263128467 - MIR SINE MIR -116 146 20 247 387 54 0 chr1 19065222 19065315 -263128349 - L2 LINE L2 -29 3243 3146 244 193 76 109 chr1 19065331 19065450 -263128214 - MLT1I LTR MaLR -17 392 278 432 254 52 46 chr1 19065544 19065717 -263127947 - MLT1H LTR MaLR -328 221 48 585 175 98 28 chr1 19065807 19065950 -263127714 - HsTC2 DNA Tc2 0 1898 1746 706 250 34 0 chr1 19065961 19066137 -263127527 - HsTC2 DNA Tc2 -1715 183 2 516 298 22 57 chr1 19066138 19066287 -263127377 - MIR SINE MIR -12 250 110 2469 183 34 13 chr1 19066287 19066763 -263126901 + MER66B LTR ERV1 1 486 0 516 298 22 57 chr1 19066763 19066841 -263126823 - MIR SINE MIR -152 110 31 378 220 25 59 chr1 19066875 19066993 -263126671 + MIR SINE MIR 113 226 -36 2534 101 25 6 chr1 19067208 19067565 -263126099 - THE1B LTR MaLR 0 364 1 801 225 62 13 chr1 19067622 19067849 -263125815 - L1ME2 LINE L1 0 6164 5927 457 81 0 0 chr1 19067849 19067911 -263125753 + MER101 LTR ERV1 1 62 -412 655 230 0 7 chr1 19067911 19068050 -263125614 + AluJo SINE Alu 2 139 -173 2195 174 19 2 chr1 19068063 19068482 -263125182 + MER101 LTR ERV1 49 474 0 450 204 38 8 chr1 19068482 19068614 -263125050 - L1ME2 LINE L1 -238 5926 5791 825 256 55 23 chr1 19068614 19068993 -263124671 + LTR41 LTR ERVL 3 483 -290 648 216 13 108 chr1 19069866 19070098 -263123566 + LTR41 LTR ERVL 564 773 0 838 204 6 0 chr1 19070447 19070614 -263123050 + AluJo SINE Alu 139 306 -6 307 374 0 0 chr1 19070700 19070823 -263122841 + ERVL LTR ERVL 416 538 -5226 2461 324 69 30 chr1 19071186 19072311 -263121353 + ERVL LTR ERVL 1028 2196 -3568 794 243 89 19 chr1 19072617 19073076 -263120588 + LTR41 LTR ERVL 8 580 -193 655 215 24 102 chr1 19073223 19073469 -263120195 + LTR41 LTR ERVL 540 766 -7 368 247 107 27 chr1 19073476 19073626 -263120038 - L1ME2 LINE L1 -367 5797 5636 929 92 39 15 chr1 19074602 19074732 -263118932 - FLAM_C SINE Alu 0 133 1 253 235 0 0 chr1 19074764 19074815 -263118849 + L2 LINE L2 3210 3260 -12 2204 100 0 0 chr1 19075032 19075332 -263118332 - AluSx SINE Alu -12 300 1 198 0 0 0 chr1 19077542 19077564 -263116100 + (TGGGGG)n Simple_repeat Simple_repeat 5 26 0 525 218 9 0 chr1 19077673 19077783 -263115881 + MER20 DNA MER1_type 108 218 -1 198 175 0 0 chr1 19077792 19077832 -263115832 + L2 LINE L2 3265 3304 -9 352 212 12 24 chr1 19078724 19078809 -263114855 + L2 LINE L2 3190 3273 -40 505 289 50 0 chr1 19078843 19079002 -263114662 - MIR SINE MIR -6 256 90 232 304 51 0 chr1 19079804 19079883 -263113781 - MIR SINE MIR -92 116 34 785 262 39 9 chr1 19080008 19080241 -263113423 - MIR SINE MIR -18 244 5 189 0 0 0 chr1 19080329 19080350 -263113314 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 747 278 139 24 chr1 19080350 19080732 -263112932 - L2 LINE L2 -32 3281 2856 310 224 0 15 chr1 19081473 19081540 -263112124 - LTR67 LTR ERVL -3 554 489 227 281 0 37 chr1 19081847 19081929 -263111735 - MLT1K LTR MaLR -485 103 25 450 230 158 20 chr1 19082395 19082547 -263111117 - MIR SINE MIR -25 237 65 298 298 24 48 chr1 19082966 19083067 -263110597 + MIR3 SINE MIR 62 161 -47 575 326 31 65 chr1 19083067 19083420 -263110244 - MER102b DNA MER1_type 0 341 1 298 298 24 48 chr1 19083420 19083442 -263110222 + MIR3 SINE MIR 161 182 -26 22 0 0 0 chr1 19083472 19083494 -263110170 + AT_rich Low_complexity Low_complexity 1 22 0 648 310 36 13 chr1 19084320 19084529 -263109135 + MIR SINE MIR 3 217 -45 2208 130 18 12 chr1 19084529 19084867 -263108797 - MER58B DNA MER1_type 0 341 2 648 310 36 13 chr1 19084867 19084912 -263108752 + MIR SINE MIR 217 259 -3 347 338 103 29 chr1 19084944 19085225 -263108439 + L3 LINE CR1 1171 1472 -105 304 218 68 105 chr1 19086719 19086852 -263106812 + MIR SINE MIR 21 148 -60 503 295 153 0 chr1 19087116 19087299 -263106365 + MIR SINE MIR 51 261 -1 243 241 17 0 chr1 19087798 19087856 -263105808 + L2 LINE L2 3238 3296 -17 651 255 15 5 chr1 19087962 19088162 -263105502 - L2 LINE L2 -257 3056 2855 231 321 28 19 chr1 19088580 19088686 -263104978 - MIR3 SINE MIR -36 172 66 295 236 151 100 chr1 19089039 19089298 -263104366 + L2 LINE L2 1870 2141 -1173 * 298 203 63 146 chr1 19089278 19089436 -263104228 - L2 LINE L2 -98 3174 3030 265 313 43 3 chr1 19089426 19089548 -263104116 - MIR SINE MIR -27 181 50 * 1534 154 3 86 chr1 19090252 19090590 -263103074 - AluJb SINE Alu -2 310 1 485 176 32 32 chr1 19090984 19091109 -263102555 + MER117 DNA MER1_type 20 144 -53 1903 135 10 0 chr1 19091171 19091459 -263102205 - AluSx SINE Alu -21 291 1 419 286 29 14 chr1 19092060 19092200 -263101464 + MIR3 SINE MIR 47 188 -20 248 283 43 0 chr1 19092834 19092926 -263100738 + MIR SINE MIR 38 133 -129 497 282 129 57 chr1 19092953 19093286 -263100378 - MLT1J2 LTR MaLR 0 450 94 1907 139 0 19 chr1 19093386 19093695 -263099969 + AluJo SINE Alu 1 303 -9 280 345 101 0 chr1 19093740 19093888 -263099776 - MIR3 SINE MIR -27 181 19 1379 191 85 116 chr1 19094384 19094690 -263098974 - MLT1C LTR MaLR 0 467 180 2121 123 7 0 chr1 19094690 19095000 -263098664 - AluSx SINE Alu 0 312 1 1379 191 85 116 chr1 19095000 19095175 -263098489 - MLT1C LTR MaLR -287 180 1 271 290 65 24 chr1 19096081 19096205 -263097459 - L1MC/D LINE L1 -1992 5816 5688 1186 87 89 2 chr1 19096633 19096824 -263096840 + THE1B LTR MaLR 1 203 -152 204 339 83 9 chr1 19097382 19097491 -263096173 + MIR SINE MIR 31 147 -115 2268 120 128 13 chr1 19097492 19097875 -263095789 - MSTA LTR MaLR -1 427 1 219 307 92 52 chr1 19098081 19098234 -263095430 - MIR SINE MIR -17 245 87 2268 117 47 33 chr1 19098276 19098635 -263095029 - THE1B LTR MaLR 0 364 1 261 237 26 0 chr1 19098916 19098992 -263094672 + MIR SINE MIR 143 220 -42 2016 240 17 74 chr1 19099217 19099801 -263093863 - MLT1E LTR MaLR 0 593 43 1702 155 19 26 chr1 19100153 19100463 -263093201 - AluJo SINE Alu -4 308 1 919 356 34 38 chr1 19100599 19100734 -263092930 - L1MC4a LINE L1 -1852 5956 5822 1874 121 10 24 chr1 19100734 19101032 -263092632 - AluSx SINE Alu -18 294 1 919 356 34 38 chr1 19101032 19101601 -263092063 - L1MC4a LINE L1 -1986 5822 5255 246 254 45 9 chr1 19102491 19102601 -263091063 + Charlie7 DNA MER1_type 2429 2542 -70 482 299 19 13 chr1 19102911 19103065 -263090599 + L2 LINE L2 3159 3313 0 440 229 115 13 chr1 19103067 19103224 -263090440 - MIR SINE MIR -31 231 59 7447 172 172 12 chr1 19103281 19104794 -263088870 - MER52A LTR ERV1 0 1755 1 411 276 16 8 chr1 19104833 19104960 -263088704 - MIR SINE MIR -123 139 12 217 373 30 8 chr1 19105639 19105773 -263087891 - MIR SINE MIR -15 247 111 370 221 77 42 chr1 19107547 19107694 -263085970 - MIR SINE MIR -71 137 27 * 520 195 189 19 chr1 19107691 19107850 -263085814 + MIR SINE MIR 14 199 -63 316 246 141 80 chr1 19108460 19108822 -263084842 - MLT1J LTR MaLR -34 477 94 220 239 211 28 chr1 19108834 19108943 -263084721 + MIR SINE MIR 108 236 -26 207 156 0 0 chr1 19109673 19109705 -263083959 + GA-rich Low_complexity Low_complexity 1 32 0 279 0 0 0 chr1 19109768 19109799 -263083865 + (TG)n Simple_repeat Simple_repeat 2 32 0 305 291 79 23 chr1 19109893 19110071 -263083593 - MIR SINE MIR -58 150 5 239 317 113 30 chr1 19111093 19111323 -263082341 + MIR SINE MIR 2 250 -12 233 255 108 10 chr1 19112692 19112794 -263080870 - L1ME LINE L1 -620 5546 5435 259 314 75 50 chr1 19113094 19113657 -263080007 - L1MC4a LINE L1 -1032 5114 4538 276 276 81 89 chr1 19113866 19114045 -263079619 - L1MC4a LINE L1 -1896 4250 4074 2182 120 3 10 chr1 19114045 19114354 -263079310 - AluSg SINE Alu -3 307 1 276 276 81 89 chr1 19114354 19114533 -263079131 - L1MC4a LINE L1 -2072 4074 3895 661 230 53 13 chr1 19114584 19114736 -263078928 - MIR SINE MIR -29 233 76 2179 228 161 25 chr1 19114736 19115877 -263077787 - Zaphod DNA AcHobo 0 4031 119 291 54 0 0 chr1 19115877 19115914 -263077750 + (TG)n Simple_repeat Simple_repeat 2 38 0 191 283 33 17 chr1 19115989 19116049 -263077615 - MIR SINE MIR -173 89 29 2246 118 7 7 chr1 19116162 19116467 -263077197 + AluSx SINE Alu 1 305 -7 2766 82 3 43 chr1 19116480 19116824 -263076840 + THE1C LTR MaLR 1 329 -46 1794 150 0 11 chr1 19116824 19117090 -263076574 - AluSq SINE Alu -48 265 3 2766 82 3 43 chr1 19117090 19117136 -263076528 + THE1C LTR MaLR 329 375 0 320 335 64 34 chr1 19117258 19117443 -263076221 + MIR SINE MIR 2 191 -34 342 266 13 44 chr1 19117482 19117640 -263076024 - MLT1K LTR MaLR -40 548 396 248 241 48 24 chr1 19117764 19117847 -263075817 - MLT1L LTR MaLR -340 275 191 678 226 164 93 chr1 19118011 19118068 -263075596 + L2 LINE L2 2606 2658 -655 2215 104 7 29 chr1 19118068 19118375 -263075289 - AluSq SINE Alu -12 301 2 678 226 164 93 chr1 19118375 19118835 -263074829 + L2 LINE L2 2658 3155 -158 2305 99 20 0 chr1 19118835 19119139 -263074525 - AluSg SINE Alu 0 310 1 678 226 164 93 chr1 19119139 19119300 -263074364 + L2 LINE L2 3155 3303 -10 1824 207 49 34 chr1 19120269 19120742 -263072922 - MLT1D LTR MaLR 0 505 26 556 297 99 0 chr1 19120791 19120993 -263072671 + MIR SINE MIR 16 237 -25 3650 70 2 0 chr1 19121004 19121461 -263072203 + L1PA7 LINE L1 5691 6148 -6 550 308 30 26 chr1 19121904 19122138 -263071526 + MIR SINE MIR 13 247 -15 443 285 178 43 chr1 19122553 19122929 -263070735 - L2 LINE L2 0 3313 2887 3322 101 20 14 chr1 19122935 19123422 -263070242 + MER1A DNA MER1_type 40 529 0 602 216 70 40 chr1 19123463 19123662 -263070002 + L2 LINE L2 1630 1834 -1480 560 273 99 13 chr1 19123682 19123986 -263069678 - L1MC4 LINE L1 -29 8013 7684 3096 212 19 49 chr1 19124002 19125323 -263068341 - L1ME1 LINE L1 -24 6536 5168 1717 149 64 30 chr1 19125323 19125619 -263068045 - AluJb SINE Alu -6 306 1 3096 212 19 49 chr1 19125619 19125878 -263067786 - L1ME1 LINE L1 -1392 5168 4903 1663 105 4 45 chr1 19125879 19126126 -263067538 - AluSg/x SINE Alu 0 312 76 877 133 8 0 chr1 19126126 19126254 -263067410 - AluSq/x SINE Alu -184 129 1 3649 241 67 17 chr1 19126254 19127548 -263066116 - L1ME1 LINE L1 -1634 4906 3549 646 141 107 0 chr1 19127554 19127675 -263065989 + MER7A DNA MER2_type 1 132 -214 626 239 8 0 chr1 19127677 19127807 -263065857 + FLAM_C SINE Alu 2 132 -11 418 174 35 0 chr1 19127808 19127894 -263065770 + MER7A DNA MER2_type 115 203 -134 362 171 29 0 chr1 19127911 19127981 -263065683 + MER7A DNA MER2_type 115 186 -151 403 167 0 0 chr1 19128012 19128084 -263065580 + MER7A DNA MER2_type 115 186 -151 422 153 0 0 chr1 19128115 19128187 -263065477 + MER7A DNA MER2_type 124 195 -151 504 97 0 0 chr1 19128218 19128290 -263065374 + MER7A DNA MER2_type 114 185 -151 444 125 0 0 chr1 19128321 19128393 -263065271 + MER7A DNA MER2_type 115 186 -151 427 153 0 0 chr1 19128414 19128486 -263065178 + MER7A DNA MER2_type 114 185 -151 795 124 0 0 chr1 19128517 19128638 -263065026 + MER7A DNA MER2_type 124 244 -102 1623 220 94 56 chr1 19128638 19129423 -263064241 - L1ME1 LINE L1 -4382 2158 1344 879 218 26 0 chr1 19129423 19129652 -263064012 - L1MA7 LINE L1 0 6291 6057 1880 158 3 20 chr1 19129662 19129965 -263063699 - AluJb SINE Alu -14 298 1 263 194 122 109 chr1 19130216 19130545 -263063119 - L1ME1 LINE L1 -5681 849 517 266 271 157 7 chr1 19130664 19130804 -263062860 - L1MC4 LINE L1 -364 7678 7518 1911 296 161 13 chr1 19130804 19131152 -263062512 + L2 LINE L2 1822 2117 -1196 2402 106 0 3 chr1 19131152 19131463 -263062201 - AluSx SINE Alu -2 310 1 1911 296 161 13 chr1 19131463 19132333 -263061331 + L2 LINE L2 2117 3219 -94 1564 148 93 4 chr1 19133210 19133480 -263060184 + AluJb SINE Alu 1 294 -18 3146 209 54 51 chr1 19133528 19134030 -263059634 - L1ME1 LINE L1 -68 6098 5599 2003 99 0 33 chr1 19134030 19134303 -263059361 - AluSp SINE Alu -14 299 36 3146 209 54 51 chr1 19134303 19135094 -263058570 - L1ME1 LINE L1 -567 5599 4797 2229 106 10 0 chr1 19135094 19135387 -263058277 - AluSx SINE Alu -16 296 1 3146 209 54 51 chr1 19135387 19135465 -263058199 - L1ME1 LINE L1 -1369 4797 4721 212 194 0 0 chr1 19135492 19135528 -263058136 - MIR SINE MIR -107 155 120 553 336 65 14 chr1 19135631 19135797 -263057867 + MIR SINE MIR 21 202 -60 318 253 13 0 chr1 19135797 19135876 -263057788 + MER116 DNA Mariner 1 80 0 553 336 65 14 chr1 19135876 19135926 -263057738 + MIR SINE MIR 202 248 -14 182 280 140 0 chr1 19136228 19136335 -263057329 - L2 LINE L2 -229 3043 2922 1822 149 56 3 chr1 19136924 19137212 -263056452 + AluJb SINE Alu 3 305 -7 306 292 200 15 chr1 19137402 19137597 -263056067 - L2 LINE L2 -84 3229 2999 522 188 69 0 chr1 19137674 19137775 -263055889 + MER58A DNA MER1_type 1 108 0 23 0 0 0 chr1 19137835 19137858 -263055806 + AT_rich Low_complexity Low_complexity 1 23 0 340 185 0 170 chr1 19137913 19138006 -263055658 + MER58A DNA MER1_type 113 178 -2242 890 201 11 11 chr1 19138006 19138195 -263055469 - MER53 DNA DNA 0 189 1 340 185 0 170 chr1 19138195 19138236 -263055428 + MER58A DNA MER1_type 178 224 0 288 248 8 96 chr1 19138236 19138361 -263055303 - L2 LINE L2 -545 2769 2656 253 107 89 0 chr1 19138701 19138757 -263054907 + T-rich Low_complexity Low_complexity 2 62 0 227 357 125 13 chr1 19140790 19141014 -263052650 - L2 LINE L2 -17 3296 3048 262 308 29 0 chr1 19141021 19141125 -263052539 + MLT1J2 LTR MaLR 15 121 -329 513 198 135 42 chr1 19141184 19141376 -263052288 + MLT1J2 LTR MaLR 241 450 0 196 204 315 0 chr1 19141425 19141479 -263052185 - MIR SINE MIR -186 76 6 350 274 124 20 chr1 19141761 19141914 -263051750 + MIR SINE MIR 27 195 -67 411 324 28 0 chr1 19142041 19142183 -263051481 - MIR SINE MIR -34 228 83 322 250 242 18 chr1 19142212 19142449 -263051215 - MLT1L LTR MaLR -6 581 239 611 249 104 59 chr1 19143642 19143863 -263049801 + MIR SINE MIR 1 231 -31 1329 190 44 96 chr1 19144052 19144437 -263049227 + MLT1A1 LTR MaLR 1 365 0 250 269 0 65 chr1 19144559 19144652 -263049012 + L2 LINE L2 2919 3005 -308 551 272 42 47 chr1 19145337 19145528 -263048136 + MIR SINE MIR 15 204 -58 222 261 15 31 chr1 19145515 19145580 -263048084 - L2 LINE L2 0 3272 3209 * 279 120 40 20 chr1 19145597 19145647 -263048017 + MIR SINE MIR 201 251 -11 431 215 0 0 chr1 19146884 19146963 -263046701 + MIR SINE MIR 65 143 -119 724 288 43 9 chr1 19147460 19147704 -263045960 + MIR SINE MIR 6 256 -6 1162 242 163 38 chr1 19148128 19148826 -263044838 + L2 LINE L2 2512 3309 -4 299 313 109 15 chr1 19148867 19149068 -263044596 + L3b LINE CR1 1272 1491 -92 193 305 281 0 chr1 19149233 19149315 -263044349 - L2 LINE L2 -18 3254 3150 228 143 0 0 chr1 19149539 19149574 -263044090 - MIR SINE MIR -111 151 117 325 331 46 15 chr1 19150023 19150153 -263043511 + MIR SINE MIR 110 243 -19 195 282 39 0 chr1 19150172 19150250 -263043414 + MIR SINE MIR 14 94 -168 280 240 62 42 chr1 19150382 19150478 -263043186 - MIR3 SINE MIR -7 201 104 368 279 55 61 chr1 19151027 19151192 -263042472 + MIR3 SINE MIR 24 187 -21 608 291 140 51 chr1 19151287 19151658 -263042006 - L2 LINE L2 -39 3233 2830 1808 165 73 30 chr1 19151843 19152213 -263041451 - MLT1B LTR MaLR -4 386 1 288 281 60 60 chr1 19152285 19152452 -263041212 - MIR3 SINE MIR -7 201 35 319 319 0 30 chr1 19152526 19152661 -263041003 + MIR SINE MIR 56 186 -76 1839 191 30 19 chr1 19152746 19153107 -263040557 + MLT1A1 LTR MaLR 1 365 0 2193 64 0 36 chr1 19153662 19153942 -263039722 - AluY SINE Alu -1 310 41 208 333 56 40 chr1 19153943 19154069 -263039595 + MIR SINE MIR 58 185 -77 2325 104 0 0 chr1 19155088 19155387 -263038277 - AluSx SINE Alu -15 297 1 335 264 129 103 chr1 19155564 19155943 -263037721 + L2 LINE L2 2900 3288 -25 208 292 0 0 chr1 19156769 19156817 -263036847 - L2 LINE L2 -14 3258 3211 466 238 119 0 chr1 19157081 19157232 -263036432 + LTR16C LTR ERVL 321 489 -2 263 296 20 10 chr1 19157266 19157364 -263036300 - MIR SINE MIR -130 132 34 252 306 20 10 chr1 19158624 19158722 -263034942 + MIR SINE MIR 34 132 -130 384 123 0 0 chr1 19159190 19159263 -263034401 + (TG)n Simple_repeat Simple_repeat 2 74 0 192 77 0 0 chr1 19159375 19159401 -263034263 + (TG)n Simple_repeat Simple_repeat 1 26 0 625 110 0 0 chr1 19159602 19159684 -263033980 - AluS SINE Alu -230 83 2 239 320 105 76 chr1 19159703 19160084 -263033580 + L2 LINE L2 2881 3272 0 825 310 71 10 chr1 19160457 19160674 -263032990 + L2 LINE L2 2545 2747 -566 1286 216 5 0 chr1 19160674 19160896 -263032768 - MER58A DNA MER1_type 0 224 2 825 310 71 10 chr1 19160896 19161265 -263032399 + L2 LINE L2 2747 3175 -138 758 188 0 17 chr1 19161275 19161456 -263032208 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 2389 148 6 6 chr1 19161464 19161829 -263031835 - MLT1A1 LTR MaLR 0 365 1 276 100 0 0 chr1 19161829 19161869 -263031795 + (TCCA)n Simple_repeat Simple_repeat 4 43 0 259 341 14 43 chr1 19161870 19162008 -263031656 + L2 LINE L2 3136 3269 -3 2367 87 0 0 chr1 19162210 19162520 -263031144 + AluY SINE Alu 1 310 -1 21 0 0 0 chr1 19162685 19162706 -263030958 + AT_rich Low_complexity Low_complexity 1 21 0 244 233 27 14 chr1 19163019 19163092 -263030572 + CT-rich Low_complexity Low_complexity 2 75 0 217 345 58 0 chr1 19163099 19163186 -263030478 - L2 LINE L2 -41 3231 3140 714 250 62 54 chr1 19163208 19163362 -263030302 + MIR SINE MIR 36 194 -68 2313 108 42 33 chr1 19163362 19163723 -263029941 + THE1B LTR MaLR 1 364 0 714 250 62 54 chr1 19163723 19163792 -263029872 + MIR SINE MIR 194 261 -1 573 281 12 12 chr1 19163838 19163998 -263029666 - L2 LINE L2 -189 3083 2924 1658 234 47 30 chr1 19164098 19164617 -263029047 + MLT1F1 LTR MaLR 25 567 0 703 286 37 14 chr1 19164740 19164957 -263028707 - MIR SINE MIR 0 262 41 266 190 63 13 chr1 19165167 19165246 -263028418 - L2 LINE L2 -905 2409 2327 962 160 75 21 chr1 19166201 19166345 -263027319 + MER20 DNA MER1_type 22 180 -39 1756 145 9 35 chr1 19166345 19166662 -263027002 - AluJb SINE Alu 0 312 4 962 160 75 21 chr1 19166662 19166704 -263026960 + MER20 DNA MER1_type 180 218 -1 22 0 0 0 chr1 19167041 19167063 -263026601 + AT_rich Low_complexity Low_complexity 1 22 0 330 205 0 27 chr1 19167502 19167614 -263026050 + CT-rich Low_complexity Low_complexity 1 109 0 182 291 51 38 chr1 19167944 19168023 -263025641 - MIR SINE MIR -67 141 62 381 277 84 0 chr1 19168205 19168324 -263025340 - MIR SINE MIR -75 187 59 2208 104 3 0 chr1 19168340 19168638 -263025026 - AluSq SINE Alu -10 303 5 315 303 106 29 chr1 19168910 19169184 -263024480 - L1MC4a LINE L1 -1929 5879 5585 2130 126 0 13 chr1 19169245 19169562 -263024102 + AluSq SINE Alu 1 313 0 212 320 29 3 chr1 19169877 19169982 -263023682 - MIR SINE MIR -77 131 23 191 305 34 0 chr1 19170451 19170510 -263023154 - L2 LINE L2 -79 3193 3133 378 313 189 5 chr1 19170648 19170865 -263022799 + MIR SINE MIR 3 259 -3 2411 69 0 0 chr1 19170943 19171246 -263022418 - AluY SINE Alu -8 303 1 786 290 32 0 chr1 19172072 19172293 -263021371 - MIR SINE MIR -13 249 22 721 137 16 33 chr1 19172977 19173160 -263020504 + GA-rich Low_complexity Low_complexity 1 180 0 227 245 0 0 chr1 19173389 19173442 -263020222 + G-rich Low_complexity Low_complexity 5 57 0 270 116 0 0 chr1 19173761 19173804 -263019860 + (CCCA)n Simple_repeat Simple_repeat 4 46 0 307 341 35 0 chr1 19173985 19174158 -263019506 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 693 249 0 0 chr1 19174173 19174571 -263019093 + (TCCA)n Simple_repeat Simple_repeat 1 398 0 605 310 51 14 chr1 19174836 19175052 -263018612 + MIR SINE MIR 29 252 -10 1497 194 15 15 chr1 19175676 19176001 -263017663 + MER63B DNA MER1_type 9 333 -103 23 0 0 0 chr1 19176222 19176245 -263017419 + AT_rich Low_complexity Low_complexity 1 23 0 2187 116 0 0 chr1 19176492 19176793 -263016871 + AluSx SINE Alu 1 301 -11 633 188 0 8 chr1 19176886 19177003 -263016661 + MER63B DNA MER1_type 320 435 -1 374 55 14 41 chr1 19177713 19177786 -263015878 + (TCCA)n Simple_repeat Simple_repeat 3 73 0 475 172 13 10 chr1 19177985 19178081 -263015583 + MER33 DNA MER1_type 1 88 -93 794 144 0 0 chr1 19178082 19178200 -263015464 + AluJb SINE Alu 174 291 -21 1077 138 42 8 chr1 19178200 19178439 -263015225 + MER33 DNA MER1_type 78 324 0 2003 113 16 29 chr1 19178945 19179255 -263014409 + AluJb SINE Alu 1 306 -6 942 215 27 27 chr1 19179269 19179488 -263014176 - MER20 DNA MER1_type 0 219 1 219 292 97 0 chr1 19179552 19179624 -263014040 + L2 LINE L2 3153 3231 -41 386 309 39 28 chr1 19180191 19180372 -263013292 + MIR3 SINE MIR 16 198 -10 335 244 0 12 chr1 19180595 19180677 -263012987 + MIR SINE MIR 100 180 -82 * 399 259 30 46 chr1 19180657 19180788 -263012876 - MIR SINE MIR -90 172 44 205 280 0 0 chr1 19180923 19180973 -263012691 - L2 LINE L2 -3 3310 3261 830 184 0 47 chr1 19181062 19181176 -263012488 + L1ME2 LINE L1 5714 5817 -347 1683 98 0 0 chr1 19181176 19181401 -263012263 - AluSq SINE Alu -16 297 73 830 184 0 47 chr1 19181401 19181476 -263012188 + L1ME2 LINE L1 5817 5894 -270 766 262 29 81 chr1 19181482 19181636 -263012028 - L2 LINE L2 -124 3189 3029 2542 174 12 21 chr1 19181636 19182066 -263011598 + MSTB LTR MaLR 1 426 0 766 262 29 81 chr1 19182066 19182373 -263011291 - L2 LINE L2 -284 3029 2768 356 291 131 29 chr1 19183106 19183281 -263010383 + MIR SINE MIR 8 200 -62 1415 194 39 22 chr1 19183281 19183664 -263010000 - MLT1F1 LTR MaLR -2 565 155 3288 216 31 27 chr1 19183677 19183822 -263009842 - L1ME1 LINE L1 -66 6100 5957 1835 152 3 16 chr1 19183822 19184137 -263009527 - AluJb SINE Alu -1 311 1 3288 216 31 27 chr1 19184137 19184805 -263008859 - L1ME1 LINE L1 -209 5957 5293 2228 109 0 0 chr1 19184805 19185118 -263008546 - AluSq SINE Alu 0 313 1 3288 216 31 27 chr1 19185118 19185814 -263007850 - L1ME1 LINE L1 -873 5293 4584 419 202 29 19 chr1 19185922 19186026 -263007638 - MLT1F1 LTR MaLR -436 106 2 369 286 37 65 chr1 19186600 19186890 -263006774 - MLT1H LTR MaLR -109 300 51 463 277 108 12 chr1 19187455 19187621 -263006043 - MIR SINE MIR -4 258 77 507 355 12 36 chr1 19187680 19187931 -263005733 + L3 LINE CR1 1331 1575 -2 360 262 116 29 chr1 19188008 19188180 -263005484 - MIR3 SINE MIR -6 202 16 488 136 0 12 chr1 19188905 19188986 -263004678 - MER116 DNA Mariner 0 80 1 350 262 8 49 chr1 19189289 19189411 -263004253 - MLT1K LTR MaLR -2 586 470 682 273 136 23 chr1 19189519 19189790 -263003874 + MLT1J2 LTR MaLR 59 380 -70 1665 155 0 54 chr1 19189790 19190086 -263003578 - AluJb SINE Alu -22 290 11 682 273 136 23 chr1 19190086 19190166 -263003498 + MLT1J2 LTR MaLR 380 450 0 593 330 65 40 chr1 19190166 19190487 -263003177 - MLT1K LTR MaLR -144 444 116 292 323 50 34 chr1 19191336 19191520 -263002144 - MIR SINE MIR -13 249 63 216 406 0 0 chr1 19191539 19191635 -263002029 - L2 LINE L2 -5 3308 3213 847 226 73 57 chr1 19191849 19191902 -263001762 - MIR SINE MIR -10 252 201 2055 116 7 3 chr1 19191902 19192196 -263001468 - AluSx SINE Alu -17 295 1 847 226 73 57 chr1 19192196 19192390 -263001274 - MIR SINE MIR -61 201 1 372 226 0 24 chr1 19193471 19193555 -263000109 - MIR SINE MIR -61 147 66 1751 213 71 42 chr1 19193830 19194132 -262999532 - MLT1C LTR MaLR 0 467 175 2184 112 3 0 chr1 19194132 19194435 -262999229 + AluSg SINE Alu 1 304 -6 2089 138 3 0 chr1 19194439 19194744 -262998920 + AluSx SINE Alu 1 306 -6 1751 213 71 42 chr1 19194744 19194887 -262998777 - MLT1C LTR MaLR -294 173 4 208 319 96 30 chr1 19194887 19195012 -262998652 + MIR SINE MIR 54 190 -72 811 258 10 0 chr1 19195633 19195831 -262997833 + MIR SINE MIR 57 256 -6 2350 57 9 31 chr1 19195834 19196152 -262997512 - AluY SINE Alu 0 311 1 379 245 152 40 chr1 19197087 19197238 -262996426 + MIR SINE MIR 91 258 -4 439 208 17 0 chr1 19197249 19197369 -262996295 + (TGG)n Simple_repeat Simple_repeat 1 122 0 198 276 83 50 chr1 19197559 19197740 -262995924 - L2 LINE L2 -383 2931 2745 213 39 0 0 chr1 19198114 19198140 -262995524 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 279 283 111 10 chr1 19198145 19198244 -262995420 - L2 LINE L2 -18 3295 3187 647 340 80 28 chr1 19198833 19199318 -262994346 + L2 LINE L2 2764 3272 0 315 203 0 0 chr1 19199318 19199392 -262994272 + (TGGA)n Simple_repeat Simple_repeat 2 75 0 214 293 162 0 chr1 19199967 19200066 -262993598 - MIR SINE MIR -116 146 32 239 280 217 7 chr1 19201200 19201343 -262992321 + MIR3 SINE MIR 27 199 -9 190 235 42 109 chr1 19201833 19201952 -262991712 + MIR SINE MIR 37 147 -115 423 231 109 34 chr1 19202056 19202107 -262991557 - MIR SINE MIR 0 262 216 2552 81 5 51 chr1 19202107 19202149 -262991515 - THE1A LTR MaLR 0 355 313 2221 112 0 0 chr1 19202149 19202452 -262991212 + AluSx SINE Alu 1 303 -9 2552 81 5 51 chr1 19202452 19202781 -262990883 - THE1A LTR MaLR -42 313 1 423 231 109 34 chr1 19202781 19202876 -262990788 - MIR SINE MIR -46 216 105 300 237 145 40 chr1 19202995 19203147 -262990517 - L2 LINE L2 -215 3057 2890 323 254 40 92 chr1 19203690 19203863 -262989801 - MIR3 SINE MIR -35 173 10 225 339 0 0 chr1 19203902 19203967 -262989697 + CT-rich Low_complexity Low_complexity 3 67 0 427 255 99 14 chr1 19204613 19204754 -262988910 + MIR SINE MIR 31 183 -79 180 200 0 0 chr1 19204808 19204848 -262988816 + (CTG)n Simple_repeat Simple_repeat 2 41 0 258 356 48 0 chr1 19204880 19204984 -262988680 + L2 LINE L2 3205 3313 0 416 223 58 0 chr1 19205568 19205695 -262987969 - MIR SINE MIR -62 146 48 204 210 32 32 chr1 19206132 19206194 -262987470 + MIR SINE MIR 85 146 -62 1398 256 85 24 chr1 19206206 19206667 -262986997 + MLT1D LTR MaLR 16 504 -1 275 200 0 12 chr1 19206872 19206952 -262986712 + C-rich Low_complexity Low_complexity 4 82 0 461 273 25 0 chr1 19206978 19207099 -262986565 + MER5B DNA MER1_type 1 124 -54 908 232 189 12 chr1 19207100 19207359 -262986305 - AluSp SINE Alu -8 305 1 244 255 0 0 chr1 19207368 19207419 -262986245 + MER5B DNA MER1_type 124 174 -4 1717 266 37 19 chr1 19207496 19208063 -262985601 + MLT1K LTR MaLR 12 588 0 196 256 68 86 chr1 19208063 19208125 -262985539 + MIR3 SINE MIR 82 143 -65 2283 89 0 17 chr1 19208125 19208453 -262985211 + AluSc SINE Alu 1 309 0 196 256 68 86 chr1 19208453 19208507 -262985157 + MIR3 SINE MIR 143 196 -12 278 211 144 58 chr1 19208916 19209020 -262984644 + MIR SINE MIR 13 125 -137 436 254 175 17 chr1 19209039 19209216 -262984448 - MLT1K LTR MaLR -371 217 13 318 50 0 0 chr1 19209308 19209348 -262984316 + (TG)n Simple_repeat Simple_repeat 1 40 0 473 310 28 42 chr1 19209852 19210068 -262983596 + MIR SINE MIR 2 214 -48 499 283 26 46 chr1 19210732 19210884 -262982780 - MIR3 SINE MIR -59 149 1 1377 52 0 0 chr1 19210923 19211097 -262982567 + (TTTC)n Simple_repeat Simple_repeat 1 174 0 12487 194 24 13 chr1 19211137 19214964 -262978700 + L1PA16 LINE L1 2300 6161 -5 2566 125 14 16 chr1 19214972 19215404 -262978260 - L1MB2 LINE L1 -7 6164 5734 557 234 39 0 chr1 19215414 19215542 -262978122 + MIR SINE MIR 53 185 -77 1054 242 33 102 chr1 19215547 19216027 -262977637 + LTR16A1 LTR ERVL 7 453 -4 291 204 31 71 chr1 19216027 19216125 -262977539 - MIR SINE MIR -5 257 164 662 204 84 7 chr1 19216205 19216347 -262977317 + MLT1A2 LTR MaLR 180 332 -42 237 257 162 0 chr1 19216555 19216629 -262977035 + MIR3 SINE MIR 77 162 -46 655 295 5 0 chr1 19216629 19216819 -262976845 + MER117 DNA MER1_type 2 192 -5 892 283 135 21 chr1 19217042 19217463 -262976201 + MLT1K LTR MaLR 76 544 -44 213 303 151 8 chr1 19217830 19217949 -262975715 - MIR3 SINE MIR -69 139 4 196 240 60 0 chr1 19218032 19218082 -262975582 + MIR SINE MIR 201 253 -9 235 330 59 17 chr1 19218105 19218223 -262975441 - LTR16C LTR ERVL 0 491 369 2289 205 14 27 chr1 19218243 19218755 -262974909 + MLT1F LTR MaLR 9 513 -29 228 313 20 0 chr1 19219179 19219278 -262974386 + (TGAG)n Simple_repeat Simple_repeat 1 101 0 756 142 0 8 chr1 19219387 19219514 -262974150 + MLT1F1 LTR MaLR 334 459 -108 281 308 9 28 chr1 19220059 19220166 -262973498 - MIR SINE MIR -105 157 53 249 309 73 9 chr1 19220298 19220408 -262973256 + MIR3 SINE MIR 45 161 -47 312 281 52 30 chr1 19220522 19220657 -262973007 - MIR SINE MIR -87 175 38 723 303 107 29 chr1 19220803 19221216 -262972448 - MLT1K LTR MaLR -3 585 141 443 211 41 32 chr1 19221300 19221423 -262972241 - MIR SINE MIR -70 192 69 183 320 40 32 chr1 19221702 19221827 -262971837 - L2 LINE L2 -182 3090 2965 715 215 5 70 chr1 19221933 19222133 -262971531 + MIR SINE MIR 52 238 -24 217 268 70 14 chr1 19222250 19222321 -262971343 + MIR SINE MIR 3 77 -185 230 270 16 0 chr1 19222358 19222421 -262971243 + MIR SINE MIR 176 239 -23 306 256 17 34 chr1 19222495 19222612 -262971052 - MLT1K LTR MaLR -392 196 82 807 210 87 10 chr1 19222635 19222830 -262970834 + MER58C DNA MER1_type 6 215 0 817 206 178 52 chr1 19222955 19223343 -262970321 - LTR33A LTR ERVL 0 523 87 857 236 139 27 chr1 19223826 19224199 -262969465 + MER113 DNA MER1_type? 38 452 -69 451 122 100 11 chr1 19224228 19224318 -262969346 + MER4A LTR ERV1 1 98 -566 2236 110 10 3 chr1 19224413 19224714 -262968950 + AluSq SINE Alu 7 309 -4 1201 134 10 29 chr1 19224716 19224971 -262968693 + MER4B LTR ERV1 381 620 -44 1373 95 0 0 chr1 19224971 19225140 -262968524 - AluSc SINE Alu -17 292 124 354 127 0 0 chr1 19225140 19225195 -262968469 + MER4A LTR ERV1 610 664 0 733 292 55 8 chr1 19225797 19226033 -262967631 - MIR SINE MIR -14 248 2 233 250 21 0 chr1 19226645 19226741 -262966923 + CT-rich Low_complexity Low_complexity 4 101 0 975 95 34 14 chr1 19226806 19226953 -262966711 + THE1B LTR MaLR 1 150 -214 753 233 27 0 chr1 19227568 19227718 -262965946 + MIR SINE MIR 88 241 -21 570 305 17 11 chr1 19227950 19228124 -262965540 + MIR SINE MIR 79 253 -9 372 219 146 41 chr1 19228492 19228615 -262965049 - MIR SINE MIR -118 144 9 518 113 31 21 chr1 19228819 19228916 -262964748 + MER4A LTR ERV1 1 98 -566 1747 153 6 10 chr1 19228916 19229263 -262964401 + MER4A LTR ERV1 261 664 0 194 298 0 0 chr1 19229525 19229572 -262964092 - L2 LINE L2 -2885 429 383 495 288 124 26 chr1 19229903 19230136 -262963528 + MIR SINE MIR 7 262 0 1056 277 93 27 chr1 19231512 19231920 -262961744 - LTR16A LTR ERVL 0 450 16 1013 243 33 16 chr1 19232332 19232575 -262961089 + MIR SINE MIR 6 252 -10 1829 155 3 44 chr1 19232616 19232932 -262960732 - AluJo SINE Alu -9 303 1 181 282 118 24 chr1 19233387 19233472 -262960192 + MIR3 SINE MIR 112 204 -4 317 272 22 11 chr1 19234148 19234240 -262959424 - MIR SINE MIR -139 123 31 513 256 105 23 chr1 19234259 19234431 -262959233 + MIR3 SINE MIR 12 197 -11 189 162 81 0 chr1 19235598 19235635 -262958029 + L2 LINE L2 3220 3259 -13 * 1164 254 151 40 chr1 19235622 19236027 -262957637 + L2 LINE L2 2742 3216 -97 2440 64 0 3 chr1 19236027 19236323 -262957341 - AluY SINE Alu -16 295 1 1164 254 151 40 chr1 19236323 19236434 -262957230 + L2 LINE L2 3216 3313 0 450 339 8 0 chr1 19236613 19236740 -262956924 - L2 LINE L2 -3 3269 3142 188 337 65 11 chr1 19236866 19236958 -262956706 + MIR3 SINE MIR 104 200 -8 187 354 110 0 chr1 19237622 19237704 -262955960 + L3b LINE CR1 1345 1435 -148 444 118 0 0 chr1 19237757 19237825 -262955839 + (TCCA)n Simple_repeat Simple_repeat 2 69 0 413 285 103 89 chr1 19237825 19238194 -262955470 - L2 LINE L2 0 3272 2899 597 228 13 7 chr1 19238225 19238374 -262955290 + MLT1K LTR MaLR 122 271 -317 379 417 25 0 chr1 19238436 19238599 -262955065 + MIR3 SINE MIR 19 185 -23 340 270 90 0 chr1 19239462 19239551 -262954113 - MIR SINE MIR -83 125 29 188 298 107 24 chr1 19240030 19240114 -262953550 + MIR SINE MIR 122 212 -50 195 100 0 33 chr1 19240185 19240215 -262953449 + L2 LINE L2 3224 3252 -20 824 235 3 21 chr1 19240430 19240651 -262953013 - MIR SINE MIR 0 262 49 1040 178 0 0 chr1 19241899 19242062 -262951602 - AluJb SINE Alu -1 311 149 295 250 15 0 chr1 19242062 19242130 -262951534 + MIR SINE MIR 160 228 -34 184 354 24 0 chr1 19242174 19242256 -262951408 + MIR SINE MIR 38 121 -87 393 326 124 23 chr1 19242299 19242517 -262951147 + MIR SINE MIR 20 259 -3 241 298 43 11 chr1 19242694 19242788 -262950876 + MIR SINE MIR 110 206 -56 221 322 44 11 chr1 19242879 19242969 -262950695 - L2 LINE L2 -19 3294 3202 327 277 27 0 chr1 19243288 19243400 -262950264 - MARNA DNA Mariner -337 249 135 491 255 143 25 chr1 19244052 19244213 -262949451 + MIR SINE MIR 83 262 0 273 309 10 10 chr1 19244368 19244465 -262949199 - L2 LINE L2 -57 3256 3160 613 268 45 17 chr1 19244494 19244673 -262948991 + L2 LINE L2 3130 3313 0 453 273 83 0 chr1 19245066 19245198 -262948466 + MIR SINE MIR 47 189 -73 413 297 52 78 chr1 19245204 19245415 -262948249 + MIR SINE MIR 1 205 -57 2786 89 6 3 chr1 19245415 19245776 -262947888 - THE1B LTR MaLR -2 362 1 413 297 52 78 chr1 19245776 19245833 -262947831 + MIR SINE MIR 205 262 0 180 0 0 0 chr1 19245912 19245932 -262947732 + (TTG)n Simple_repeat Simple_repeat 2 21 0 314 301 0 0 chr1 19246120 19246193 -262947471 - MIR SINE MIR -110 152 80 258 218 45 113 chr1 19246332 19246465 -262947199 - MIR SINE MIR -70 192 69 325 232 30 61 chr1 19247084 19247183 -262946481 + MIR SINE MIR 167 262 0 211 93 0 56 chr1 19247340 19247394 -262946270 + (CAAAA)n Simple_repeat Simple_repeat 2 52 0 681 275 135 5 chr1 19248058 19248265 -262945399 - MIR SINE MIR -21 241 8 977 182 0 0 chr1 19248293 19248447 -262945217 + FRAM SINE Alu 5 158 -18 266 232 51 0 chr1 19248562 19248650 -262945014 - MIR SINE MIR -59 149 100 380 219 8 0 chr1 19249157 19249280 -262944384 + CT-rich Low_complexity Low_complexity 3 126 0 618 89 0 0 chr1 19249285 19249375 -262944289 + (TCCA)n Simple_repeat Simple_repeat 3 92 0 319 240 93 156 chr1 19249415 19249488 -262944176 + L2 LINE L2 3103 3179 -134 2202 100 53 47 chr1 19249488 19249672 -262943992 + THE1B LTR MaLR 1 192 -172 2245 108 7 3 chr1 19249672 19250030 -262943634 + AluSp SINE Alu 1 359 0 2202 100 53 47 chr1 19250030 19250201 -262943463 + THE1B LTR MaLR 192 361 -3 455 0 18 0 chr1 19250201 19250256 -262943408 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 319 240 93 156 chr1 19250256 19250406 -262943258 + L2 LINE L2 3177 3313 0 264 300 78 88 chr1 19250690 19250997 -262942667 + L2 LINE L2 2895 3198 -74 2359 110 0 0 chr1 19251041 19251350 -262942314 - AluY SINE Alu -2 309 1 745 276 77 10 chr1 19251402 19251598 -262942066 - MIR SINE MIR -25 237 29 294 355 0 8 chr1 19251612 19251733 -262941931 + MIR3 SINE MIR 82 201 -7 389 241 37 19 chr1 19251993 19252101 -262941563 + MLT1H LTR MaLR 97 206 -343 2282 111 10 0 chr1 19252556 19252853 -262940811 - AluSx SINE Alu -12 300 1 1884 205 101 5 chr1 19253487 19253902 -262939762 - MLT1D LTR MaLR -48 457 3 207 233 17 55 chr1 19253936 19254033 -262939631 - MIR SINE MIR -102 160 32 316 308 99 9 chr1 19254169 19254283 -262939381 - MIR SINE MIR -61 147 40 1767 204 44 42 chr1 19254291 19254747 -262938917 + LTR16A1 LTR ERVL 1 457 0 1883 272 54 33 chr1 19254750 19255394 -262938270 - MLT2F LTR ERVL -2 661 4 6399 270 56 48 chr1 19255396 19258003 -262935661 - ERVL-F LTR ERVL -7 5757 3132 718 337 4 4 chr1 19258008 19258257 -262935407 - ERVL LTR ERVL -4430 1334 1086 281 200 14 0 chr1 19258277 19258348 -262935316 - MLT2E LTR ERVL -548 80 8 588 148 0 0 chr1 19258564 19258652 -262935012 + AluJ/FLAM SINE Alu 6 93 -219 185 0 40 0 chr1 19258655 19258680 -262934984 + (TAA)n Simple_repeat Simple_repeat 2 27 0 377 271 158 0 chr1 19258727 19258888 -262934776 - MIR SINE MIR -44 218 37 1478 223 82 75 chr1 19259750 19260287 -262933377 - L2 LINE L2 0 3313 2781 1853 176 40 0 chr1 19260287 19260583 -262933081 - AluJb SINE Alu -2 310 3 1523 135 0 5 chr1 19260585 19260807 -262932857 - AluJb SINE Alu -11 301 81 1478 223 82 75 chr1 19260807 19261142 -262932522 - L2 LINE L2 -532 2781 2421 462 234 23 99 chr1 19261162 19261333 -262932331 + MIR SINE MIR 61 218 -44 209 32 0 32 chr1 19261342 19261373 -262932291 + (TTA)n Simple_repeat Simple_repeat 2 31 0 306 250 284 23 chr1 19261400 19261451 -262932213 + MER58A DNA MER1_type 3 39 -2381 2624 71 0 0 chr1 19261451 19261759 -262931905 + AluY SINE Alu 1 308 -3 306 250 284 23 chr1 19261759 19261883 -262931781 + MER58A DNA MER1_type 39 224 0 202 323 0 0 chr1 19262563 19262625 -262931039 + L2 LINE L2 3210 3271 -1 296 303 10 0 chr1 19262958 19263057 -262930607 + (TAGA)n Simple_repeat Simple_repeat 3 102 0 1301 115 0 0 chr1 19263362 19263527 -262930137 - AluSc SINE Alu -21 288 124 2266 85 7 3 chr1 19263527 19263820 -262929844 - AluY SINE Alu -17 294 1 244 183 0 28 chr1 19263837 19263908 -262929756 + CT-rich Low_complexity Low_complexity 5 73 0 697 156 0 64 chr1 19263915 19264056 -262929608 - FLAM_C SINE Alu -1 132 1 221 218 41 3 chr1 19264073 19264134 -262929530 + MIR SINE MIR 74 137 -71 600 214 162 7 chr1 19264514 19264668 -262928996 - MER45A DNA AcHobo 0 178 1 694 239 58 5 chr1 19264688 19264925 -262928739 + MIR SINE MIR 14 261 -1 469 337 146 5 chr1 19265866 19266276 -262927388 - L2 LINE L2 -531 2783 2316 839 281 126 17 chr1 19266729 19267198 -262926466 - LTR33 LTR ERVL -1 520 1 2168 108 10 0 chr1 19267245 19267578 -262926086 + AluSx SINE Alu 1 336 0 2343 119 0 0 chr1 19268401 19268711 -262924953 - AluSg SINE Alu 0 310 1 406 273 26 12 chr1 19268923 19269111 -262924553 + MIR SINE MIR 29 259 -3 384 227 62 32 chr1 19269140 19269295 -262924369 - MIR SINE MIR -62 146 16 2152 65 0 129 chr1 19269924 19270264 -262923400 - AluY SINE Alu -15 296 1 473 302 0 44 chr1 19270277 19270459 -262923205 - MIR3 SINE MIR -17 191 18 951 219 68 0 chr1 19270534 19270753 -262922911 - MIR SINE MIR 0 262 29 263 280 83 51 chr1 19271050 19271207 -262922457 + MIR3 SINE MIR 30 191 -17 245 376 30 8 chr1 19271962 19272095 -262921569 + MIR SINE MIR 47 182 -80 1860 148 133 21 chr1 19272283 19272668 -262920996 + MSTA LTR MaLR 1 428 0 302 95 111 32 chr1 19273256 19273319 -262920345 + MADE1 DNA Mariner 9 76 -4 369 344 6 12 chr1 19273348 19273511 -262920153 - MIR3 SINE MIR -7 201 40 198 286 0 0 chr1 19273563 19273612 -262920052 + L2 LINE L2 3186 3234 -38 265 223 32 21 chr1 19274072 19274166 -262919498 + L2 LINE L2 2965 3059 -213 229 315 0 0 chr1 19274751 19274816 -262918848 + MIR SINE MIR 85 143 -65 347 318 68 26 chr1 19274914 19275178 -262918486 + L2 LINE L2 2630 2904 -410 833 284 61 37 chr1 19275339 19275667 -262917997 + MLT1H1 LTR MaLR 37 375 -215 663 230 153 89 chr1 19275858 19276275 -262917389 + MLT1J1 LTR MaLR 3 446 0 410 304 24 8 chr1 19276536 19276661 -262917003 + L2 LINE L2 3143 3269 -3 306 240 53 13 chr1 19277495 19277570 -262916094 - MIR SINE MIR -72 190 113 227 293 146 0 chr1 19277935 19278017 -262915647 + MLT1H1 LTR MaLR 454 547 -2 2323 102 0 3 chr1 19278307 19278602 -262915062 + AluSg1 SINE Alu 1 294 -15 419 216 18 13 chr1 19278617 19278726 -262914938 - MIR3 SINE MIR -48 160 57 1778 141 92 0 chr1 19278764 19279048 -262914616 + AluSg SINE Alu 1 310 0 424 285 20 40 chr1 19279236 19279436 -262914228 + MLT1K LTR MaLR 359 554 -34 268 264 118 27 chr1 19279718 19279828 -262913836 + MIR3 SINE MIR 65 184 -24 296 262 83 60 chr1 19279862 19280030 -262913634 + L2 LINE L2 2920 3091 -181 216 67 0 0 chr1 19280687 19280717 -262912947 + (TTCA)n Simple_repeat Simple_repeat 2 31 0 296 234 31 0 chr1 19280717 19280781 -262912883 - L2 LINE L2 0 3313 3248 329 298 32 16 chr1 19280809 19280933 -262912731 - MIR SINE MIR -135 127 2 189 232 0 0 chr1 19281038 19281107 -262912557 + (TTCA)n Simple_repeat Simple_repeat 1 69 0 660 283 95 68 chr1 19281945 19282280 -262911384 - Charlie8 DNA MER1_type -1925 492 141 2006 156 0 0 chr1 19282280 19282300 -262911364 - AluJb SINE Alu -5 307 288 665 24 12 0 chr1 19282300 19282383 -262911281 + (TTATA)n Simple_repeat Simple_repeat 4 87 0 2006 156 0 0 chr1 19282383 19282669 -262910995 - AluJb SINE Alu -23 289 1 660 283 95 68 chr1 19282669 19282774 -262910890 - Charlie8 DNA MER1_type -2276 141 40 841 283 74 14 chr1 19282935 19283285 -262910379 - MLT1H LTR MaLR -178 371 1 239 291 25 25 chr1 19283291 19283370 -262910294 + MIR3 SINE MIR 90 168 -40 698 103 16 0 chr1 19283816 19283942 -262909722 + (TCCA)n Simple_repeat Simple_repeat 3 130 0 2509 80 0 0 chr1 19283946 19284247 -262909417 - AluY SINE Alu -10 301 1 181 301 72 78 chr1 19286079 19286169 -262907495 + MIR SINE MIR 27 117 -145 1634 161 45 0 chr1 19286169 19286336 -262907328 - AluJo SINE Alu -13 299 112 288 0 0 0 chr1 19286336 19286368 -262907296 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1634 161 45 0 chr1 19286368 19286486 -262907178 - AluJo SINE Alu -200 112 1 181 301 72 78 chr1 19286486 19286548 -262907116 + MIR SINE MIR 117 178 -84 358 299 41 0 chr1 19286560 19286657 -262907007 + MER91C DNA MER1_type 40 140 0 522 263 18 23 chr1 19286810 19286981 -262906683 + MIR SINE MIR 87 256 -6 390 74 0 0 chr1 19288227 19288281 -262905383 + (TTCA)n Simple_repeat Simple_repeat 2 55 0 222 276 92 0 chr1 19288306 19288382 -262905282 - L2 LINE L2 -68 3204 3122 205 189 0 0 chr1 19289161 19289198 -262904466 + L3b LINE CR1 1349 1385 -198 2057 133 20 3 chr1 19289198 19289499 -262904165 + AluSx SINE Alu 1 306 -6 2200 141 3 0 chr1 19289503 19289808 -262903856 + AluSx SINE Alu 1 306 -6 600 183 127 0 chr1 19289809 19289951 -262903713 - MLT1C LTR MaLR -304 163 4 189 328 104 16 chr1 19289951 19290076 -262903588 + MIR SINE MIR 55 190 -72 225 355 10 0 chr1 19290696 19290893 -262902771 + MIR SINE MIR 57 255 -7 1672 133 0 35 chr1 19291079 19291334 -262902330 - AluSx SINE Alu -66 246 1 710 259 101 20 chr1 19291987 19292234 -262901430 + L2 LINE L2 3046 3312 -1 500 274 101 6 chr1 19292201 19292369 -262901295 - MIR SINE MIR -50 212 29 * 21 0 0 0 chr1 19292673 19292694 -262900970 + AT_rich Low_complexity Low_complexity 1 21 0 369 345 17 17 chr1 19292757 19292876 -262900788 + MIR SINE MIR 24 142 -120 949 271 155 8 chr1 19292895 19293257 -262900407 + MLT1J LTR MaLR 19 433 -78 344 274 43 34 chr1 19294096 19294213 -262899451 - MIR3 SINE MIR -20 188 71 2160 116 10 26 chr1 19294346 19294649 -262899015 + AluSq SINE Alu 3 300 -13 750 268 106 0 chr1 19294793 19294991 -262898673 + MIR SINE MIR 43 261 -1 521 172 124 2 chr1 19295137 19295285 -262898379 - MLT1J2 LTR MaLR -239 211 38 252 292 163 11 chr1 19295313 19295491 -262898173 + MIR SINE MIR 48 252 -10 271 250 22 22 chr1 19295492 19295584 -262898080 + CT-rich Low_complexity Low_complexity 5 96 0 590 308 54 13 chr1 19296109 19296333 -262897331 - MIR SINE MIR -2 260 28 238 252 26 35 chr1 19296375 19296490 -262897174 + L2 LINE L2 2917 3030 -242 757 171 11 0 chr1 19296766 19296941 -262896723 + (TCCA)n Simple_repeat Simple_repeat 4 180 0 1946 133 35 11 chr1 19296981 19297328 -262896336 + L1MB3 LINE L1 5827 6181 -2 702 261 55 10 chr1 19297578 19297777 -262895887 - MIR SINE MIR -45 217 10 695 172 71 12 chr1 19297952 19298121 -262895543 + MER96B DNA MER1_type? 1 179 -238 539 309 20 20 chr1 19298294 19298498 -262895166 + MIR SINE MIR 21 224 -38 216 309 30 53 chr1 19299378 19299534 -262894130 - MIR SINE MIR -72 190 40 307 365 30 12 chr1 19299751 19299918 -262893746 - MIR3 SINE MIR -3 205 36 211 264 72 50 chr1 19299941 19300110 -262893554 + MIR SINE MIR 33 206 -56 531 292 57 83 chr1 19300249 19300550 -262893114 + L2 LINE L2 2966 3258 -14 259 293 136 14 chr1 19301611 19301758 -262891906 + MLT1H LTR MaLR 372 536 -13 181 267 67 0 chr1 19301831 19301891 -262891773 + MIR SINE MIR 29 92 -116 187 311 22 11 chr1 19302093 19302183 -262891481 - MIR SINE MIR -2 260 170 482 177 53 18 chr1 19302190 19302303 -262891361 + L2 LINE L2 3192 3308 -5 1052 172 49 5 chr1 19302414 19302617 -262891047 + MER20 DNA MER1_type 8 219 0 1144 237 108 45 chr1 19302693 19302900 -262890764 - MLT1D LTR MaLR 0 505 313 2119 118 36 36 chr1 19302900 19303264 -262890400 - THE1B LTR MaLR 0 364 1 1144 237 108 45 chr1 19303264 19303528 -262890136 - MLT1D LTR MaLR -192 313 4 234 289 67 0 chr1 19303583 19303673 -262889991 - MIR SINE MIR -77 185 90 448 213 5 122 chr1 19304283 19304302 -262889362 - L1MA10 LINE L1 0 6334 6316 3283 221 21 53 chr1 19304302 19304903 -262888761 - L1ME1 LINE L1 -10 6225 5679 1718 159 63 30 chr1 19304903 19305204 -262888460 + AluJo SINE Alu 2 312 0 3283 221 21 53 chr1 19305204 19305744 -262887920 - L1ME1 LINE L1 -556 5679 5123 866 248 10 0 chr1 19305728 19305926 -262887738 - L1ME1 LINE L1 -6153 243 44 * 301 331 12 60 chr1 19306028 19306194 -262887470 - MIR SINE MIR -82 180 23 376 147 15 0 chr1 19306727 19306795 -262886869 + L1MA5A LINE L1 5883 5951 -346 233 163 23 0 chr1 19306826 19306869 -262886795 - MER117 DNA MER1_type -144 53 10 732 374 108 18 chr1 19306894 19307522 -262886142 - L3 LINE CR1 -96 1481 797 712 262 144 0 chr1 19307604 19307833 -262885831 - MIR SINE MIR 0 262 1 705 249 226 24 chr1 19308278 19308699 -262884965 + MLT1K LTR MaLR 76 581 -7 269 278 69 0 chr1 19308806 19308878 -262884786 - L2 LINE L2 -47 3225 3149 578 192 54 129 chr1 19309085 19309309 -262884355 + MIR SINE MIR 43 249 -13 318 280 9 9 chr1 19310202 19310309 -262883355 + (CTCA)n Simple_repeat Simple_repeat 2 108 0 1625 141 65 73 chr1 19310770 19311111 -262882553 + THE1C LTR MaLR 3 340 -35 1808 157 64 0 chr1 19311117 19311398 -262882266 - AluSx SINE Alu -13 299 1 1653 177 63 46 chr1 19311762 19312219 -262881445 - MLT1C LTR MaLR -2 465 1 2671 88 8 8 chr1 19312911 19313285 -262880379 - THE1C LTR MaLR 0 375 2 213 336 55 31 chr1 19313759 19313887 -262879777 + L2 LINE L2 3138 3268 -4 1878 149 0 3 chr1 19313906 19314218 -262879446 + AluSx SINE Alu 3 313 0 1401 139 48 0 chr1 19314561 19314769 -262878895 - AluJo SINE Alu -10 302 85 206 297 0 31 chr1 19314874 19314938 -262878726 - L2 LINE L2 -4 3309 3248 327 259 53 46 chr1 19314976 19315107 -262878557 - L1ME4a LINE L1 -130 5991 5860 311 314 57 8 chr1 19315108 19315232 -262878432 - MIR SINE MIR -62 200 71 230 359 69 0 chr1 19315322 19315453 -262878211 + MIR SINE MIR 108 247 -15 524 241 183 0 chr1 19315710 19315901 -262877763 + MIR SINE MIR 16 241 -21 1279 140 30 47 chr1 19316289 19316602 -262877062 - L1MB8 LINE L1 -13 6167 5858 274 239 172 30 chr1 19316629 19316763 -262876901 - MIR3 SINE MIR -37 171 19 201 163 0 0 chr1 19316857 19316906 -262876758 + CT-rich Low_complexity Low_complexity 2 50 0 368 295 192 29 chr1 19316920 19317300 -262876364 - L2 LINE L2 -37 3276 2835 2130 114 0 0 chr1 19317503 19317820 -262875844 + AluSx SINE Alu 1 317 0 609 337 36 4 chr1 19318485 19318734 -262874930 - MIR SINE MIR 0 262 6 2061 124 3 51 chr1 19318845 19319160 -262874504 + AluSx SINE Alu 1 300 -12 496 315 27 0 chr1 19320188 19320337 -262873327 - MIR SINE MIR -98 164 12 236 378 66 20 chr1 19320572 19320723 -262872941 - L2 LINE L2 0 3272 3115 246 231 0 0 chr1 19321431 19321483 -262872181 - L2 LINE L2 -344 2969 2918 277 284 39 0 chr1 19321523 19321625 -262872039 + MLT1I LTR MaLR 16 121 -288 350 255 3 24 chr1 19321756 19321853 -262871811 + MLT1H LTR MaLR 454 538 -11 199 371 19 9 chr1 19321907 19322012 -262871652 - L2 LINE L2 -433 2881 2776 243 257 86 19 chr1 19322019 19322124 -262871540 - MIR SINE MIR -63 145 34 224 318 35 0 chr1 19322231 19322316 -262871348 - MIR3 SINE MIR -48 160 73 496 320 115 35 chr1 19322915 19323281 -262870383 + MLT1I LTR MaLR 13 407 -2 230 250 42 0 chr1 19323298 19323370 -262870294 - MER103 DNA DNA -21 145 71 300 357 24 8 chr1 19323382 19323508 -262870156 + L1M4 LINE L1 3073 3200 -2946 264 115 16 33 chr1 19323509 19323570 -262870094 + (GAAAA)n Simple_repeat Simple_repeat 4 63 0 182 356 93 0 chr1 19323802 19323920 -262869744 + MIR3 SINE MIR 2 130 -78 1980 107 6 89 chr1 19324789 19325207 -262868457 + AluJb SINE Alu 1 390 0 402 140 11 32 chr1 19325639 19325732 -262867932 + GA-rich Low_complexity Low_complexity 2 92 0 286 274 39 78 chr1 19326873 19327026 -262866638 - MLT1K LTR MaLR -10 578 432 1088 280 68 38 chr1 19327079 19327479 -262866185 - MLT1K LTR MaLR -157 431 20 294 314 12 0 chr1 19327776 19327862 -262865802 + L2 LINE L2 3187 3273 -40 2550 61 0 0 chr1 19327919 19328246 -262865418 + L1PA6 LINE L1 5821 6147 -7 598 350 74 24 chr1 19328320 19328740 -262864924 - L3 LINE CR1 -295 1282 842 589 242 52 69 chr1 19328815 19328877 -262864787 - MIR SINE MIR -16 246 184 2058 120 76 3 chr1 19328877 19329168 -262864496 - AluSp SINE Alu -1 312 1 589 242 52 69 chr1 19329168 19329336 -262864328 - MIR SINE MIR -78 184 20 345 280 87 0 chr1 19330302 19330479 -262863185 + MIR SINE MIR 31 225 -37 324 261 54 9 chr1 19330533 19330644 -262863020 - MIR SINE MIR -119 143 28 458 324 54 51 chr1 19331227 19331497 -262862167 + L2 LINE L2 2952 3225 -88 2644 88 0 24 chr1 19331497 19331870 -262861794 - THE1B LTR MaLR 0 364 1 458 324 54 51 chr1 19331870 19331951 -262861713 + L2 LINE L2 3225 3304 -9 282 282 8 26 chr1 19333353 19333470 -262860194 + (ATGGTG)n Simple_repeat Simple_repeat 1 115 0 327 301 80 88 chr1 19333919 19334168 -262859496 + L2 LINE L2 3008 3254 -18 1675 176 24 40 chr1 19334216 19334592 -262859072 - MLT1A2 LTR MaLR -1 373 4 407 279 91 19 chr1 19335108 19335262 -262858402 - L2 LINE L2 0 3272 3108 333 259 288 0 chr1 19335336 19335475 -262858189 + MIR SINE MIR 7 185 -77 2192 136 0 25 chr1 19335493 19335809 -262857855 + AluSx SINE Alu 1 308 -4 186 219 0 24 chr1 19336091 19336132 -262857532 + L2 LINE L2 3136 3175 -97 255 182 18 0 chr1 19336682 19336737 -262856927 + MIR SINE MIR 82 137 -71 238 36 0 0 chr1 19337231 19337259 -262856405 + (TC)n Simple_repeat Simple_repeat 1 28 0 885 173 3 10 chr1 19337259 19337548 -262856116 + CT-rich Low_complexity Low_complexity 1 287 0 360 0 0 0 chr1 19337551 19337591 -262856073 + (CA)n Simple_repeat Simple_repeat 2 41 0 480 274 76 83 chr1 19337704 19338113 -262855551 + MLT1I LTR MaLR 3 408 -1 544 332 58 5 chr1 19339212 19339435 -262854229 - MIR SINE MIR -21 241 7 256 355 99 0 chr1 19339444 19339585 -262854079 - MIR3 SINE MIR -27 181 27 180 0 0 0 chr1 19340086 19340106 -262853558 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 1391 102 4 59 chr1 19340106 19340152 -262853512 + L1PB1 LINE L1 5928 5975 -176 1924 84 114 0 chr1 19340152 19340415 -262853249 + AluSg SINE Alu 1 293 -17 1391 102 4 59 chr1 19340415 19340604 -262853060 + L1PB1 LINE L1 5975 6150 -1 2205 145 80 10 chr1 19341073 19341473 -262852191 - MSTA LTR MaLR 0 428 1 477 256 267 11 chr1 19341842 19342033 -262851631 - MIR SINE MIR -1 261 22 699 323 15 37 chr1 19342108 19342436 -262851228 - L3 LINE CR1 -79 1498 1178 321 343 42 55 chr1 19342446 19342682 -262850982 - L1ME3 LINE L1 -2 6160 5928 1060 276 49 38 chr1 19342697 19343142 -262850522 - L1ME3A LINE L1 -208 5962 5513 2195 99 7 40 chr1 19343174 19343476 -262850188 - AluSq SINE Alu -21 292 1 231 286 40 56 chr1 19343823 19343949 -262849715 + MLT1H LTR MaLR 51 174 -375 230 321 64 21 chr1 19344022 19344162 -262849502 + MLT1H LTR MaLR 403 548 -1 484 310 13 7 chr1 19344223 19344378 -262849286 - MIR SINE MIR -85 177 22 381 319 42 24 chr1 19344660 19344889 -262848775 + MIR SINE MIR 27 261 -1 2451 84 7 0 chr1 19346789 19347088 -262846576 + AluSq SINE Alu 3 303 -10 284 295 58 87 chr1 19347451 19347658 -262846006 - MIR SINE MIR -60 202 2 293 292 18 35 chr1 19348276 19348389 -262845275 - MIR SINE MIR -63 145 35 245 246 0 0 chr1 19348668 19348725 -262844939 - MIR SINE MIR -7 255 199 295 370 46 27 chr1 19349805 19350024 -262843640 + L2 LINE L2 2866 3088 -184 186 333 36 24 chr1 19350105 19350189 -262843475 - L2 LINE L2 -27 3245 3161 195 194 0 0 chr1 19350555 19350591 -262843073 + MIR SINE MIR 111 146 -116 698 314 30 11 chr1 19350919 19351054 -262842610 - L2 LINE L2 0 3313 3182 948 63 14 7 chr1 19351054 19351196 -262842468 + (TCTA)n Simple_repeat Simple_repeat 1 143 0 698 314 30 11 chr1 19351196 19351331 -262842333 - L2 LINE L2 -131 3182 3038 456 182 10 10 chr1 19351330 19351429 -262842235 - MIR SINE MIR -62 200 102 * 251 305 0 12 chr1 19352094 19352176 -262841488 - MIR SINE MIR 0 262 182 679 229 179 15 chr1 19352207 19352408 -262841256 + MIR SINE MIR 29 262 0 746 283 118 25 chr1 19352464 19352870 -262840794 - L2 LINE L2 -3 3310 2867 241 340 132 6 chr1 19353366 19353525 -262840139 - MIR SINE MIR -14 248 70 294 290 56 19 chr1 19353960 19354067 -262839597 + L2 LINE L2 3197 3307 -6 711 282 57 40 chr1 19354068 19354133 -262839531 - MIR SINE MIR 0 262 200 486 281 11 28 chr1 19354133 19354311 -262839353 - MER5B DNA MER1_type -2 176 2 711 282 57 40 chr1 19354311 19354472 -262839192 - MIR SINE MIR -62 200 32 381 43 0 0 chr1 19354925 19354972 -262838692 + (TTCA)n Simple_repeat Simple_repeat 2 48 0 293 310 50 0 chr1 19355698 19355798 -262837866 + MIR SINE MIR 30 134 -128 221 239 0 45 chr1 19355965 19356032 -262837632 + (CATATA)n Simple_repeat Simple_repeat 2 65 0 351 296 96 0 chr1 19456169 19456284 -262737380 - L1MC4a LINE L1 -1882 5926 5801 2222 99 3 10 chr1 19456302 19456605 -262737059 + AluSq SINE Alu 1 301 -12 758 250 31 0 chr1 19456638 19456830 -262736834 - MIR SINE MIR -46 216 19 668 258 70 55 chr1 19456854 19457125 -262736539 - L1MC4a LINE L1 -2011 5797 5523 543 274 38 6 chr1 19457494 19457651 -262736013 + MIR3 SINE MIR 47 208 0 482 349 85 13 chr1 19457712 19457947 -262735717 + MIR SINE MIR 3 254 -8 268 305 160 14 chr1 19458348 19458561 -262735103 + MIR SINE MIR 13 256 -6 412 269 208 0 chr1 19458776 19458925 -262734739 + MER5A DNA MER1_type 4 183 -6 345 24 0 0 chr1 19459816 19459858 -262733806 + (CA)n Simple_repeat Simple_repeat 2 43 0 230 140 40 20 chr1 19460126 19460176 -262733488 + G-rich Low_complexity Low_complexity 3 53 0 353 382 29 0 chr1 19460305 19460475 -262733189 - MIR SINE MIR -3 259 85 255 344 33 33 chr1 19460889 19461011 -262732653 - L3b LINE CR1 -253 1330 1209 570 341 29 0 chr1 19462105 19462310 -262731354 - MIR SINE MIR -32 230 20 348 258 71 88 chr1 19462903 19463085 -262730579 + MIR SINE MIR 22 200 -62 326 282 81 40 chr1 19463233 19463382 -262730282 + L3 LINE CR1 1417 1571 -6 237 270 107 71 chr1 19463653 19463849 -262729815 - L2 LINE L2 -19 3253 3051 213 178 0 0 chr1 19463934 19463979 -262729685 + A-rich Low_complexity Low_complexity 1 45 0 333 289 24 0 chr1 19464002 19464085 -262729579 + L2 LINE L2 3227 3311 -2 613 295 14 48 chr1 19464101 19464311 -262729353 - MIR SINE MIR -59 203 1 2280 167 10 13 chr1 19464372 19464761 -262728903 - MLT1B LTR MaLR 0 390 3 297 247 0 14 chr1 19465806 19465879 -262727785 + MIR SINE MIR 16 87 -121 1862 246 80 29 chr1 19465984 19466538 -262727126 - MLT1E LTR MaLR 0 593 15 306 0 0 0 chr1 19467557 19467591 -262726073 + (CAAT)n Simple_repeat Simple_repeat 2 35 0 711 301 61 24 chr1 19467763 19467844 -262725820 + MIR SINE MIR 5 82 -180 2322 127 19 24 chr1 19467844 19468221 -262725443 + THE1C LTR MaLR 1 375 0 711 301 61 24 chr1 19468221 19468385 -262725279 + MIR SINE MIR 82 259 -3 207 0 0 0 chr1 19469333 19469356 -262724308 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 446 230 77 20 chr1 19469356 19469503 -262724161 - MER31B LTR ERV1 -10 651 302 942 149 106 5 chr1 19469622 19469810 -262723854 - MER2 DNA MER2_type -135 210 4 * 952 149 108 15 chr1 19469810 19469994 -262723670 - MER31A LTR ERV1 -283 202 1 252 167 21 0 chr1 19470193 19470241 -262723423 - L2 LINE L2 -1 3312 3264 294 208 115 25 chr1 19470418 19470543 -262723121 + MIR SINE MIR 8 145 -63 641 274 6 0 chr1 19470928 19471092 -262722572 + MIR SINE MIR 8 172 -90 758 190 127 19 chr1 19471133 19471291 -262722373 - FAM SINE Alu 0 175 1 1255 276 119 17 chr1 19471340 19471862 -262721802 - MLT1E LTR MaLR -18 575 1 396 248 9 28 chr1 19471891 19472000 -262721664 + L2 LINE L2 3207 3313 0 597 294 105 10 chr1 19472369 19472824 -262720840 + L2 LINE L2 2560 3055 -217 402 304 105 25 chr1 19472991 19473401 -262720263 + L2 LINE L2 2600 3058 -214 1073 173 62 13 chr1 19474384 19474610 -262719054 + L1MB2 LINE L1 5619 5855 -316 2139 181 55 0 chr1 19474610 19475011 -262718653 + L1MB2 LINE L1 5743 6167 -4 2387 114 26 63 chr1 19475547 19475925 -262717739 - THE1B LTR MaLR 0 364 1 252 0 0 0 chr1 19476356 19476384 -262717280 + (TC)n Simple_repeat Simple_repeat 2 29 0 357 316 45 7 chr1 19476686 19476841 -262716823 + MIR SINE MIR 54 214 -48 375 304 0 0 chr1 19477107 19477209 -262716455 - MIR SINE MIR -113 149 48 830 201 5 10 chr1 19478139 19478520 -262715144 + CT-rich Low_complexity Low_complexity 1 379 0 759 185 6 20 chr1 19478899 19479209 -262714455 + CT-rich Low_complexity Low_complexity 1 399 -11 687 84 0 0 chr1 19479209 19479304 -262714360 + (TTTC)n Simple_repeat Simple_repeat 4 98 0 759 185 6 20 chr1 19479304 19479316 -262714348 + CT-rich Low_complexity Low_complexity 399 410 0 1908 193 112 0 chr1 19479333 19479716 -262713948 + MSTB LTR MaLR 1 426 0 215 275 29 14 chr1 19479808 19479877 -262713787 - L2 LINE L2 -226 3046 2977 208 345 53 9 chr1 19480030 19480143 -262713521 - L2 LINE L2 -482 2832 2715 287 278 93 0 chr1 19480471 19480568 -262713096 + L2 LINE L2 3154 3259 -13 280 290 138 22 chr1 19481239 19481463 -262712201 + L2 LINE L2 2827 3076 -196 252 272 62 25 chr1 19481560 19481641 -262712023 - MIR3 SINE MIR -32 176 93 408 252 168 19 chr1 19482624 19482779 -262710885 - MIR SINE MIR -4 258 81 733 149 22 28 chr1 19482790 19482971 -262710693 + CT-rich Low_complexity Low_complexity 1 180 0 243 326 0 0 chr1 19483178 19483264 -262710400 + (TCCA)n Simple_repeat Simple_repeat 3 88 0 313 182 20 20 chr1 19483277 19483376 -262710288 + (TCCA)n Simple_repeat Simple_repeat 1 99 0 465 369 137 10 chr1 19483405 19483798 -262709866 - L2 LINE L2 -3 3269 2827 512 333 49 11 chr1 19483955 19484187 -262709477 + MIR SINE MIR 11 250 -12 384 262 0 19 chr1 19484424 19484531 -262709133 + MER103 DNA DNA 62 166 0 207 194 0 0 chr1 19484962 19484998 -262708666 + GA-rich Low_complexity Low_complexity 1 36 0 356 275 33 8 chr1 19485080 19485200 -262708464 + MIR SINE MIR 88 210 -52 269 235 0 10 chr1 19485243 19485345 -262708319 + (TG)n Simple_repeat Simple_repeat 2 102 0 528 255 6 0 chr1 19485400 19485763 -262707901 + (TG)n Simple_repeat Simple_repeat 1 365 0 279 245 0 0 chr1 19485812 19485906 -262707758 + (TG)n Simple_repeat Simple_repeat 1 94 0 664 298 45 16 chr1 19485926 19486168 -262707496 + MIR SINE MIR 14 262 0 206 238 48 0 chr1 19486918 19486981 -262706683 - L2 LINE L2 -23 3249 3184 312 70 0 0 chr1 19486992 19487035 -262706629 + (TTCA)n Simple_repeat Simple_repeat 1 43 0 199 256 0 0 chr1 19487035 19487074 -262706590 - MIR SINE MIR -7 255 217 * 242 146 24 0 chr1 19487040 19487081 -262706583 - L2 LINE L2 -18 3295 3254 261 0 0 0 chr1 19487889 19487918 -262705746 + (A)n Simple_repeat Simple_repeat 1 29 0 336 83 0 0 chr1 19488571 19488619 -262705045 + (TG)n Simple_repeat Simple_repeat 2 49 0 220 169 0 31 chr1 19489276 19489341 -262704323 + GA-rich Low_complexity Low_complexity 1 63 0 218 116 23 0 chr1 19489659 19489702 -262703962 + (CCG)n Simple_repeat Simple_repeat 2 45 0 213 167 37 0 chr1 19489981 19490035 -262703629 + (TG)n Simple_repeat Simple_repeat 2 57 0 186 43 0 0 chr1 19490087 19490110 -262703554 + (TG)n Simple_repeat Simple_repeat 1 23 0 270 0 0 0 chr1 19490573 19490603 -262703061 + (TG)n Simple_repeat Simple_repeat 2 31 0 194 284 111 0 chr1 19493058 19493139 -262700525 - MIR SINE MIR -77 185 96 405 328 33 0 chr1 19493603 19493725 -262699939 - L2 LINE L2 0 3313 3188 642 332 36 5 chr1 19493782 19494005 -262699659 - MIR SINE MIR -32 230 1 220 305 12 24 chr1 19494298 19494380 -262699284 + CT-rich Low_complexity Low_complexity 3 83 0 275 245 157 29 chr1 19495640 19495742 -262697922 + L2 LINE L2 3146 3260 -12 184 324 14 14 chr1 19495844 19495915 -262697749 + L3b LINE CR1 1341 1411 -172 237 296 135 27 chr1 19496012 19496196 -262697468 - MIR SINE MIR -42 166 11 241 312 210 7 chr1 19496280 19496418 -262697246 - MIR SINE MIR -18 244 79 247 259 12 49 chr1 19496767 19496848 -262696816 + L2 LINE L2 3195 3272 0 716 217 0 6 chr1 19497110 19497290 -262696374 + GA-rich Low_complexity Low_complexity 1 179 0 498 300 105 11 chr1 19497293 19497483 -262696181 - MIR SINE MIR -10 252 45 577 247 87 0 chr1 19497489 19497639 -262696025 - MER63 DNA MER1_type -273 789 1 239 297 25 22 chr1 19497733 19497825 -262695839 + MIR SINE MIR 66 160 -48 189 329 118 0 chr1 19498164 19498249 -262695415 - L2 LINE L2 -258 3014 2920 236 415 36 13 chr1 19498765 19498989 -262694675 + MIR SINE MIR 22 250 -12 362 252 10 58 chr1 19499140 19499243 -262694421 - MIR3 SINE MIR -6 202 105 180 0 0 0 chr1 19499692 19499712 -262693952 + (GGCTG)n Simple_repeat Simple_repeat 4 23 0 419 150 0 12 chr1 19500228 19500308 -262693356 + (TTCC)n Simple_repeat Simple_repeat 3 81 0 351 113 0 0 chr1 19500469 19500522 -262693142 + (TTCC)n Simple_repeat Simple_repeat 2 54 0 427 308 17 0 chr1 19500533 19500653 -262693011 - L2 LINE L2 -1 3312 3191 503 216 123 98 chr1 19500655 19500859 -262692805 - MER3 DNA MER1_type 0 209 1 1253 242 43 39 chr1 19500909 19501347 -262692317 - MER113 DNA MER1_type? -77 444 5 425 268 116 6 chr1 19501432 19501596 -262692068 - LTR33 LTR ERVL -2 519 338 503 291 183 8 chr1 19501628 19501869 -262691795 - LTR33 LTR ERVL -238 283 1 288 271 42 42 chr1 19501875 19501971 -262691693 + MIR SINE MIR 113 208 -54 2137 112 30 0 chr1 19503545 19503848 -262689816 - AluSx SINE Alu 0 312 1 2212 103 0 19 chr1 19503972 19504284 -262689380 - AluSx SINE Alu -6 306 1 251 338 184 37 chr1 19504399 19504535 -262689129 + MIR3 SINE MIR 17 172 -36 649 317 51 68 chr1 19504733 19505203 -262688461 - L2 LINE L2 -5 3267 2806 684 307 39 22 chr1 19505603 19505860 -262687804 - MIR SINE MIR 0 262 4 240 294 106 25 chr1 19506479 19506639 -262687025 + L2 LINE L2 2866 3038 -234 212 297 54 0 chr1 19506631 19506705 -262686959 - L2 LINE L2 -1 3271 3194 * 208 295 16 0 chr1 19506715 19506776 -262686888 + L2 LINE L2 3203 3264 -8 645 292 28 14 chr1 19506958 19507174 -262686490 - L2 LINE L2 0 3313 3095 255 355 13 39 chr1 19507696 19507851 -262685813 - MIR3 SINE MIR -21 187 37 350 264 33 0 chr1 19508449 19508540 -262685124 + MIR SINE MIR 60 153 -55 411 289 48 66 chr1 19508546 19508819 -262684845 - L2 LINE L2 -85 3228 2961 377 302 22 14 chr1 19508874 19508978 -262684686 + MIR SINE MIR 44 152 -56 1785 157 0 20 chr1 19508978 19509277 -262684387 + AluJb SINE Alu 1 293 -19 377 302 22 14 chr1 19509277 19509335 -262684329 + MIR SINE MIR 152 208 0 473 286 128 19 chr1 19509459 19509725 -262683939 - L2 LINE L2 -4 3309 3015 352 258 158 0 chr1 19509982 19510141 -262683523 - MIR SINE MIR -63 145 14 246 81 0 0 chr1 19510146 19510183 -262683481 + (TG)n Simple_repeat Simple_repeat 2 38 0 999 231 144 48 chr1 19511073 19511406 -262682258 + MLT1A1 LTR MaLR 1 365 0 215 265 255 0 chr1 19511748 19511846 -262681818 + MIR3 SINE MIR 82 204 -4 668 221 17 33 chr1 19511881 19512062 -262681602 - MIR SINE MIR -71 191 14 316 236 21 4 chr1 19512723 19512817 -262680847 + MIR SINE MIR 21 116 -92 821 243 81 22 chr1 19512916 19513256 -262680408 - MLT1J2 LTR MaLR 0 450 67 229 300 80 93 chr1 19513367 19513517 -262680147 + L2 LINE L2 3149 3296 -17 375 23 0 0 chr1 19513518 19513562 -262680102 + (TGGA)n Simple_repeat Simple_repeat 1 44 0 285 325 42 33 chr1 19513675 19513795 -262679869 + L2 LINE L2 3147 3267 -5 406 274 36 42 chr1 19514724 19514892 -262678772 + MIR SINE MIR 40 206 -56 241 259 136 0 chr1 19515245 19515326 -262678338 + MIR SINE MIR 105 196 -66 218 348 134 0 chr1 19515327 19515439 -262678225 - L2 LINE L2 -2 3311 3185 207 162 0 0 chr1 19515495 19515532 -262678132 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 2473 137 32 7 chr1 19516533 19516583 -262677081 - MSTA LTR MaLR 0 428 381 245 73 0 24 chr1 19516583 19516624 -262677040 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 8544 33 6 1 chr1 19516624 19518393 -262675271 - L1PA4 LINE L1 -8 6147 4374 2473 137 32 7 chr1 19518393 19518749 -262674915 - MSTA LTR MaLR -46 382 11 530 299 12 12 chr1 19518786 19518953 -262674711 - MIR SINE MIR -75 187 21 912 243 5 14 chr1 19519131 19519353 -262674311 - MIR SINE MIR -5 257 38 333 292 58 8 chr1 19519795 19519915 -262673749 - LTR16C LTR ERVL -8 483 358 313 271 52 10 chr1 19519943 19520039 -262673625 - LTR16C LTR ERVL -191 300 201 425 262 213 0 chr1 19520130 19520313 -262673351 - MIR SINE MIR -7 255 34 222 263 0 0 chr1 19520299 19520356 -262673308 - L2 LINE L2 -2 3270 3214 * 486 323 35 31 chr1 19520935 19521084 -262672580 + MIR SINE MIR 2 154 -108 1125 220 134 80 chr1 19521084 19521314 -262672350 + LTR16C LTR ERVL 1 217 -274 1606 154 8 11 chr1 19521314 19521580 -262672084 - AluJb SINE Alu -23 289 25 1125 220 134 80 chr1 19521580 19521812 -262671852 + LTR16C LTR ERVL 217 488 -3 486 323 35 31 chr1 19521812 19521891 -262671773 + MIR SINE MIR 154 231 -31 398 288 46 0 chr1 19521932 19522085 -262671579 + L2 LINE L2 2896 3055 -217 547 213 22 29 chr1 19522918 19523054 -262670610 + MIR3 SINE MIR 15 149 -59 1711 167 7 3 chr1 19523142 19523430 -262670234 + AluJo SINE Alu 1 289 -23 430 199 145 7 chr1 19523618 19523766 -262669898 - MIR SINE MIR -62 146 9 256 275 159 24 chr1 19524632 19524839 -262668825 + L2 LINE L2 2550 2784 -530 293 269 111 0 chr1 19526117 19526225 -262667439 + MIR SINE MIR 16 135 -127 257 293 192 12 chr1 19527367 19527534 -262666130 + MIR SINE MIR 60 256 -6 414 272 55 0 chr1 19528146 19528283 -262665381 - MIR SINE MIR -56 206 45 725 335 95 16 chr1 19528302 19529006 -262664658 + L2 LINE L2 2445 3201 -112 944 243 33 25 chr1 19529033 19529149 -262664515 - MIR SINE MIR -17 245 131 2674 92 0 42 chr1 19529149 19529486 -262664178 + THE1B LTR MaLR 1 322 -42 2414 56 0 7 chr1 19529486 19529788 -262663876 - AluY SINE Alu -11 300 1 2674 92 0 42 chr1 19529788 19529830 -262663834 + THE1B LTR MaLR 322 364 0 944 243 33 25 chr1 19529830 19529956 -262663708 - MIR SINE MIR -131 131 1 495 288 0 0 chr1 19529956 19530070 -262663594 + L2 LINE L2 3200 3313 0 350 356 90 0 chr1 19531090 19531278 -262662386 + MIR SINE MIR 58 262 0 1678 147 11 11 chr1 19531326 19531599 -262662065 + AluJo SINE Alu 1 273 -39 195 256 144 11 chr1 19531670 19531760 -262661904 + MIR SINE MIR 127 228 -34 202 220 20 0 chr1 19531802 19531852 -262661812 - L2 LINE L2 -20 3252 3202 255 303 229 0 chr1 19532443 19532552 -262661112 + L2 LINE L2 2925 3058 -255 1032 260 43 54 chr1 19532559 19532943 -262660721 - MLT1J2 LTR MaLR -6 444 80 263 314 134 0 chr1 19532985 19533157 -262660507 - MLT1J2 LTR MaLR -255 195 1 435 238 56 8 chr1 19533201 19533327 -262660337 + MER94 DNA DNA 3 134 0 444 288 42 0 chr1 19533386 19533504 -262660160 + L2 LINE L2 3191 3313 0 201 209 15 90 chr1 19533725 19533792 -262659872 - L2 LINE L2 -241 3072 3011 372 354 25 13 chr1 19533803 19533961 -262659703 + MIR SINE MIR 21 180 -82 402 302 94 0 chr1 19534189 19534348 -262659316 + MIR SINE MIR 60 233 -29 314 326 61 0 chr1 19534948 19535080 -262658584 - MIR SINE MIR -62 200 61 278 303 30 10 chr1 19535273 19535372 -262658292 - MIR SINE MIR -64 144 44 257 171 45 23 chr1 19536118 19536206 -262657458 + CT-rich Low_complexity Low_complexity 5 94 0 349 238 107 0 chr1 19536665 19536780 -262656884 + MIR SINE MIR 49 187 -32 289 281 167 18 chr1 19537738 19537852 -262655812 - MIR SINE MIR -59 149 19 1826 128 3 14 chr1 19538226 19538508 -262655156 + AluSx SINE Alu 29 307 -5 338 232 0 0 chr1 19539044 19539113 -262654551 - MIR SINE MIR -118 144 76 279 301 39 39 chr1 19539203 19539306 -262654358 + L2 LINE L2 3080 3182 -90 267 264 22 33 chr1 19539410 19539501 -262654163 + L2 LINE L2 3098 3187 -85 324 200 75 0 chr1 19540044 19540124 -262653540 + MIR SINE MIR 46 131 -131 269 286 110 53 chr1 19540321 19540566 -262653098 + L2 LINE L2 2994 3252 -20 1932 100 129 62 chr1 19540741 19541039 -262652625 + THE1B LTR MaLR 1 326 -38 2064 101 7 7 chr1 19541039 19541335 -262652329 - AluSg1 SINE Alu -13 296 1 1932 100 129 62 chr1 19541335 19541377 -262652287 + THE1B LTR MaLR 326 364 0 302 290 155 21 chr1 19541584 19541777 -262651887 + MIR SINE MIR 44 262 0 199 301 97 0 chr1 19541864 19541967 -262651697 + MIR SINE MIR 60 172 -90 188 250 0 0 chr1 19542648 19542692 -262650972 - MIR SINE MIR -101 161 118 629 218 78 58 chr1 19543146 19543335 -262650329 + MIR SINE MIR 3 202 -60 1906 188 55 60 chr1 19543335 19543381 -262650283 + MER47B DNA MER2_type 1 46 -2277 1707 172 3 28 chr1 19543381 19543700 -262649964 - AluJb SINE Alu -1 311 1 1906 188 55 60 chr1 19543700 19544073 -262649591 + MER47B DNA MER2_type 46 418 0 629 218 78 58 chr1 19544073 19544136 -262649528 + MIR SINE MIR 202 262 0 287 297 142 7 chr1 19544496 19544651 -262649013 + MIR SINE MIR 87 262 0 377 217 19 4 chr1 19545927 19546025 -262647639 + MIR SINE MIR 63 146 -62 436 308 94 9 chr1 19546602 19546826 -262646838 - MIR SINE MIR 0 262 20 530 255 141 44 chr1 19547217 19547515 -262646149 + L2 LINE L2 2945 3271 -1 371 306 82 31 chr1 19549168 19549364 -262644300 - MIR SINE MIR -6 256 51 1665 161 54 0 chr1 19549562 19549842 -262643822 - AluSx SINE Alu -17 295 1 500 344 156 26 chr1 19549853 19550513 -262643151 + L2 LINE L2 2013 2758 -556 192 211 0 0 chr1 19550563 19550601 -262643063 + L2 LINE L2 3231 3268 -4 256 245 47 57 chr1 19551203 19551309 -262642355 - MIR SINE MIR -69 193 89 243 0 0 0 chr1 19551416 19551443 -262642221 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 228 319 39 58 chr1 19551740 19551947 -262641717 + MIR SINE MIR 33 235 -27 454 222 34 8 chr1 19551950 19552067 -262641597 - MIR SINE MIR -87 175 56 377 350 45 5 chr1 19553119 19553339 -262640325 - L3 LINE CR1 -103 1474 1246 518 345 36 14 chr1 19553922 19554142 -262639522 + MIR SINE MIR 20 244 -18 411 311 17 28 chr1 19554743 19554767 -262638897 + MIR SINE MIR 57 80 -182 1935 202 58 22 chr1 19554767 19555218 -262638446 - MLT1C LTR MaLR 0 467 1 411 311 17 28 chr1 19555218 19555373 -262638291 + MIR SINE MIR 80 234 -28 328 336 54 13 chr1 19555585 19555628 -262638036 - MIR SINE MIR -50 212 172 485 115 26 0 chr1 19555628 19555706 -262637958 - MADE1 DNA Mariner 0 80 1 328 336 54 13 chr1 19555706 19555811 -262637853 - MIR SINE MIR -90 172 58 2034 142 13 0 chr1 19556682 19556985 -262636679 + AluSg SINE Alu 1 307 -3 907 314 80 32 chr1 19557106 19557568 -262636096 + LTR16C LTR ERVL 8 491 0 372 269 103 45 chr1 19557571 19557727 -262635937 + MIR SINE MIR 7 171 -91 197 274 9 127 chr1 19557757 19557969 -262635695 + L2 LINE L2 3089 3275 -38 2695 42 0 6 chr1 19558104 19558417 -262635247 - AluY SINE Alu 0 311 1 409 320 146 19 chr1 19558571 19558777 -262634887 - MIR SINE MIR 0 262 31 333 68 0 0 chr1 19558884 19558928 -262634736 + (TG)n Simple_repeat Simple_repeat 1 44 0 504 202 53 9 chr1 19559459 19559573 -262634091 - L2 LINE L2 -1 3312 3194 377 292 153 38 chr1 19560799 19561008 -262632656 + MIR SINE MIR 18 250 -12 1539 221 40 42 chr1 19561016 19561519 -262632145 + MLT1D LTR MaLR 1 502 -3 206 231 31 15 chr1 19561985 19562050 -262631614 - L2 LINE L2 -191 3081 3016 291 215 69 132 chr1 19562541 19562685 -262630979 - MER5A DNA MER1_type -1 188 54 385 260 110 13 chr1 19562844 19562998 -262630666 - MIR SINE MIR -18 244 76 202 161 0 32 chr1 19563768 19563830 -262629834 + GA-rich Low_complexity Low_complexity 2 61 0 840 172 32 6 chr1 19563957 19564114 -262629550 - MER20 DNA MER1_type -25 194 34 499 304 52 59 chr1 19564188 19564494 -262629170 + MLT1H LTR MaLR 51 354 -195 214 282 27 27 chr1 19564694 19564804 -262628860 - L2 LINE L2 -339 2975 2866 2068 153 0 31 chr1 19564950 19565271 -262628393 + AluJb SINE Alu 1 311 -1 518 319 83 13 chr1 19565276 19565505 -262628159 - MIR SINE MIR 0 262 18 247 297 36 65 chr1 19565931 19566000 -262627664 - MER5B DNA MER1_type -38 140 75 1942 175 0 3 chr1 19566000 19566303 -262627361 - AluSx SINE Alu -10 302 1 247 297 36 65 chr1 19566303 19566371 -262627293 - MER5B DNA MER1_type -103 75 7 194 254 146 62 chr1 19566539 19566669 -262626995 + L2 LINE L2 2309 2449 -865 774 261 38 38 chr1 19566682 19566920 -262626744 + MIR SINE MIR 15 252 -10 493 271 52 102 chr1 19566923 19567237 -262626427 + L2 LINE L2 2453 2742 -572 2517 49 3 16 chr1 19567237 19567543 -262626121 + AluYb8 SINE Alu 1 302 -16 493 271 52 102 chr1 19567543 19567649 -262626015 + L2 LINE L2 2742 2852 -462 201 94 0 0 chr1 19567651 19567683 -262625981 + (TCTCTG)n Simple_repeat Simple_repeat 3 34 0 1251 238 127 57 chr1 19568049 19568562 -262625102 + MLT1H LTR MaLR 1 549 0 222 37 0 0 chr1 19569209 19569236 -262624428 + (GA)n Simple_repeat Simple_repeat 1 27 0 2818 171 19 7 chr1 19569693 19570232 -262623432 + L1MB2 LINE L1 5625 6169 -2 2330 101 0 3 chr1 19570241 19570539 -262623125 + AluSx SINE Alu 1 297 -15 1110 126 0 19 chr1 19570550 19570709 -262622955 + FRAM SINE Alu 1 152 -24 684 191 0 0 chr1 19571482 19571655 -262622009 + (CCA)n Simple_repeat Simple_repeat 1 173 0 181 237 0 21 chr1 19571682 19571775 -262621889 + (CCA)n Simple_repeat Simple_repeat 1 91 0 406 252 81 0 chr1 19571818 19571929 -262621735 - MIR SINE MIR -26 236 117 450 157 0 0 chr1 19573645 19573728 -262619936 + (CACCAT)n Simple_repeat Simple_repeat 4 86 0 688 139 23 17 chr1 19573743 19573916 -262619748 + (CACCAT)n Simple_repeat Simple_repeat 3 176 0 860 127 7 45 chr1 19573931 19574504 -262619160 + (CACCAT)n Simple_repeat Simple_repeat 1 551 0 870 182 0 0 chr1 19574528 19574886 -262618778 + (CCA)n Simple_repeat Simple_repeat 1 358 0 954 101 0 43 chr1 19574894 19575082 -262618582 + (CACCAT)n Simple_repeat Simple_repeat 1 180 0 857 145 17 0 chr1 19575116 19575288 -262618376 + (CACCAT)n Simple_repeat Simple_repeat 5 179 0 227 364 18 9 chr1 19575805 19575915 -262617749 + MIR SINE MIR 74 184 -78 681 328 21 12 chr1 19576038 19576279 -262617385 - MIR SINE MIR 0 262 20 206 267 13 13 chr1 19577397 19577472 -262616192 + (CCCA)n Simple_repeat Simple_repeat 2 76 0 198 233 0 0 chr1 19577529 19577589 -262616075 + (TCCA)n Simple_repeat Simple_repeat 1 60 0 495 48 0 0 chr1 19577666 19577728 -262615936 + (TCCA)n Simple_repeat Simple_repeat 4 65 0 190 238 0 131 chr1 19577867 19577951 -262615713 - L2 LINE L2 -184 3088 3016 196 365 14 0 chr1 19578029 19578103 -262615561 - L2 LINE L2 -64 3208 3134 194 276 171 16 chr1 19578424 19578547 -262615117 + MIR3 SINE MIR 7 148 -60 1131 151 33 5 chr1 19579311 19579523 -262614141 + MER20 DNA MER1_type 1 218 -1 325 332 112 31 chr1 19580416 19580702 -262612962 - L2 LINE L2 0 3313 3005 2452 68 3 16 chr1 19581812 19582122 -262611542 + AluY SINE Alu 1 306 -5 186 327 0 37 chr1 19583227 19583334 -262610330 - MIR SINE MIR -54 208 106 387 133 214 127 chr1 19584095 19584268 -262609396 + MER53 DNA DNA 2 189 0 1992 127 25 32 chr1 19584324 19584638 -262609026 + AluSx SINE Alu 1 312 0 264 154 15 31 chr1 19584647 19584712 -262608952 + T-rich Low_complexity Low_complexity 2 65 0 246 164 0 0 chr1 19584914 19584969 -262608695 + CT-rich Low_complexity Low_complexity 1 55 0 276 273 0 39 chr1 19585006 19585083 -262608581 - L2 LINE L2 -6 3307 3234 528 329 12 6 chr1 19585231 19585395 -262608269 - MIR SINE MIR -78 184 20 324 195 13 52 chr1 19585396 19585550 -262608114 + CT-rich Low_complexity Low_complexity 3 150 0 681 218 131 51 chr1 19585580 19585855 -262607809 - L1MC/D LINE L1 -2221 5587 5291 3013 43 0 0 chr1 19585870 19586244 -262607420 - L1PA5 LINE L1 -11 6143 5770 2055 168 2 45 chr1 19586297 19586697 -262606967 - MLT1B LTR MaLR 0 390 8 4556 63 3 2 chr1 19586697 19587287 -262606377 + LTR10C LTR ERV1 1 591 0 471 298 46 32 chr1 19587505 19587723 -262605941 + MIR SINE MIR 26 246 -16 446 305 39 26 chr1 19588428 19588582 -262605082 - MIR SINE MIR -66 196 41 215 305 153 8 chr1 19589286 19589404 -262604260 - L3b LINE CR1 -228 1355 1221 437 252 161 7 chr1 19589826 19589969 -262603695 - MIR SINE MIR -48 214 50 219 343 0 0 chr1 19591535 19591602 -262602062 - MER5A DNA MER1_type -32 157 91 838 259 11 34 chr1 19591602 19591865 -262601799 - MIR SINE MIR 0 262 6 378 320 193 0 chr1 19592604 19592801 -262600863 + MIR SINE MIR 4 238 -24 670 277 106 39 chr1 19592827 19593347 -262600317 + MLT1L LTR MaLR 6 584 -31 393 272 103 46 chr1 19593430 19593496 -262600168 - MIR SINE MIR -50 212 151 1683 174 41 46 chr1 19593496 19593888 -262599776 - MLT1B LTR MaLR 0 390 1 393 272 103 46 chr1 19593888 19594016 -262599648 - MIR SINE MIR -111 151 7 21 57 0 0 chr1 19594087 19594122 -262599542 + AT_rich Low_complexity Low_complexity 1 35 0 2433 94 3 0 chr1 19594130 19594438 -262599226 + AluY SINE Alu 1 309 -2 1642 218 21 5 chr1 19594443 19594824 -262598840 - L1ME1 LINE L1 -4 6162 5776 192 77 0 0 chr1 19594838 19594864 -262598800 + (TTTTA)n Simple_repeat Simple_repeat 5 30 0 2258 105 0 3 chr1 19594883 19595178 -262598486 - AluSx SINE Alu -18 294 1 203 311 48 39 chr1 19595405 19595508 -262598156 - L3b LINE CR1 -138 1445 1342 584 201 137 26 chr1 19595792 19596026 -262597638 + LTR16C LTR ERVL 232 491 0 219 333 0 0 chr1 19596134 19596197 -262597467 - MIR SINE MIR -150 112 50 499 294 19 6 chr1 19596285 19596445 -262597219 + MIR3 SINE MIR 30 191 -17 293 320 75 33 chr1 19597466 19597681 -262595983 + MIR SINE MIR 2 235 -27 197 170 170 0 chr1 19598109 19598162 -262595502 - MIR SINE MIR -99 163 102 396 0 0 0 chr1 19598518 19598562 -262595102 + (TG)n Simple_repeat Simple_repeat 2 45 0 238 300 0 14 chr1 19599199 19599269 -262594395 + GA-rich Low_complexity Low_complexity 3 71 0 784 246 27 32 chr1 19599501 19599721 -262593943 + MIR SINE MIR 44 262 0 764 186 113 65 chr1 19600502 19600749 -262592915 + ORSL DNA AcHobo 4 262 -13 413 332 89 51 chr1 19601056 19601426 -262592238 + L2 LINE L2 2910 3293 -20 180 0 0 0 chr1 19601429 19601449 -262592215 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 711 266 19 24 chr1 19601827 19602034 -262591630 - MIR SINE MIR -13 249 44 209 299 45 0 chr1 19602079 19602146 -262591518 + MIR3 SINE MIR 88 157 -51 198 196 36 0 chr1 19602558 19602614 -262591050 + MIR SINE MIR 145 202 -60 294 294 43 0 chr1 19603044 19603136 -262590528 - MIR SINE MIR -128 134 39 2254 128 0 7 chr1 19603295 19603600 -262590064 - AluSx SINE Alu -9 303 1 273 75 0 0 chr1 19603770 19603810 -262589854 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 406 145 48 124 chr1 19604696 19604841 -262588823 - MLT1H LTR MaLR -10 539 406 396 279 132 0 chr1 19605145 19605274 -262588390 + MIR SINE MIR 3 148 -114 243 355 8 24 chr1 19605483 19605607 -262588057 - L3b LINE CR1 -316 1267 1146 560 225 150 25 chr1 19605980 19606180 -262587484 + MIR SINE MIR 37 261 -1 225 235 235 0 chr1 19606203 19606305 -262587359 - MIR3 SINE MIR -72 136 11 873 227 36 23 chr1 19606720 19606940 -262586724 + MIR SINE MIR 8 230 -32 256 279 68 60 chr1 19606938 19607123 -262586541 + MIR SINE MIR 41 223 -39 * 256 361 129 13 chr1 19607511 19607821 -262585843 + L2 LINE L2 2440 2785 -529 781 229 5 32 chr1 19608146 19608334 -262585330 - MLT1A2 LTR MaLR -11 363 181 237 83 0 0 chr1 19608340 19608376 -262585288 + (GA)n Simple_repeat Simple_repeat 2 37 0 724 135 5 135 chr1 19608399 19608436 -262585228 - MLT1A2 LTR MaLR -213 161 121 1939 160 33 30 chr1 19608436 19608799 -262584865 - THE1B LTR MaLR 0 364 1 724 135 5 135 chr1 19608799 19608946 -262584718 - MLT1A2 LTR MaLR -253 121 1 280 301 24 0 chr1 19608950 19609033 -262584631 + L2 LINE L2 3187 3271 -1 213 196 0 0 chr1 19609035 19609081 -262584583 + (TGAA)n Simple_repeat Simple_repeat 3 48 0 621 267 78 14 chr1 19609778 19609995 -262583669 - MIR SINE MIR -19 243 13 191 299 89 25 chr1 19610157 19610314 -262583350 - MIR3 SINE MIR -4 204 38 3318 118 22 2 chr1 19610482 19610973 -262582691 - MER1A DNA MER1_type 0 529 29 237 150 0 0 chr1 19611100 19611140 -262582524 - MER1A DNA MER1_type -486 41 2 288 285 139 0 chr1 19611206 19611350 -262582314 + LTR16A LTR ERVL 113 276 -174 243 261 104 30 chr1 19611469 19611603 -262582061 + MIR SINE MIR 109 252 -10 363 270 113 9 chr1 19612326 19612441 -262581223 + MIR SINE MIR 80 206 -56 307 284 116 19 chr1 19613207 19613362 -262580302 + MIR SINE MIR 23 192 -70 416 293 168 21 chr1 19613411 19613602 -262580062 + MIR SINE MIR 22 240 -22 251 315 61 48 chr1 19613800 19613965 -262579699 + MIR SINE MIR 40 206 -56 357 309 158 19 chr1 19614003 19614474 -262579190 - L2 LINE L2 0 3313 2743 3089 76 25 5 chr1 19614477 19614912 -262578752 - MLT2A1 LTR ERVL 0 444 1 184 316 51 25 chr1 19615066 19615145 -262578519 + L3 LINE CR1 1496 1576 -1 1599 226 68 14 chr1 19615450 19615888 -262577776 - MLT1C LTR MaLR 0 467 6 2176 147 23 0 chr1 19615925 19616273 -262577391 - THE1B LTR MaLR -8 356 1 280 278 35 35 chr1 19616294 19616409 -262577255 - MIR3 SINE MIR -91 117 3 202 300 93 52 chr1 19616565 19616835 -262576829 + L2 LINE L2 2960 3240 -32 199 316 36 72 chr1 19616923 19617062 -262576602 - L2 LINE L2 -114 3158 3025 686 248 32 12 chr1 19617702 19617946 -262575718 - MIR SINE MIR -8 254 5 272 225 25 38 chr1 19618484 19618564 -262575100 + MIR SINE MIR 46 124 -84 732 249 101 18 chr1 19618767 19618984 -262574680 + MIR SINE MIR 22 256 -6 202 293 0 0 chr1 19619052 19619110 -262574554 + MIR SINE MIR 90 147 -115 371 344 46 0 chr1 19620344 19620495 -262573169 + MIR SINE MIR 47 204 -58 246 360 96 28 chr1 19621235 19621413 -262572251 + MIR SINE MIR 48 237 -25 1363 217 104 30 chr1 19621441 19621874 -262571790 - MLT1C LTR MaLR 0 467 3 1913 145 82 20 chr1 19623523 19623691 -262569973 - THE1C LTR MaLR -1 374 218 222 37 0 0 chr1 19623691 19623718 -262569946 + (GA)n Simple_repeat Simple_repeat 1 27 0 1913 145 82 20 chr1 19623718 19623901 -262569763 - THE1C LTR MaLR -157 218 1 2078 128 0 0 chr1 19624417 19624727 -262568937 - AluSx SINE Alu 0 310 1 574 239 75 45 chr1 19624899 19625100 -262568564 - MER58C DNA MER1_type -2 213 7 208 368 97 0 chr1 19625107 19625221 -262568443 + MIR SINE MIR 112 236 -26 737 251 90 5 chr1 19625247 19625458 -262568206 - MIR SINE MIR -17 245 17 374 149 21 21 chr1 19626220 19626314 -262567350 + GA-rich Low_complexity Low_complexity 1 94 0 250 224 60 26 chr1 19626321 19626437 -262567227 + L1ME4a LINE L1 5993 6112 -9 993 272 72 44 chr1 19627071 19627385 -262566279 - L2 LINE L2 -21 3292 2988 2013 157 3 3 chr1 19627385 19627684 -262565980 + AluJo SINE Alu 1 299 -13 993 272 72 44 chr1 19627684 19627964 -262565700 - L2 LINE L2 -325 2988 2679 2104 204 132 26 chr1 19627979 19628558 -262565106 - MLT1E2 LTR MaLR 0 626 1 180 0 0 0 chr1 19629494 19629514 -262564150 + (TA)n Simple_repeat Simple_repeat 2 21 0 2233 60 7 53 chr1 19629514 19629814 -262563850 - AluY SINE Alu -25 286 1 1254 225 80 46 chr1 19629841 19630277 -262563387 + L1ME3 LINE L1 5701 6151 -11 195 309 55 0 chr1 19630360 19630415 -262563249 - MIR SINE MIR -88 174 117 2157 124 0 22 chr1 19630562 19630877 -262562787 - AluSg SINE Alu -2 308 1 1035 204 14 5 chr1 19631739 19631955 -262561709 - MER20 DNA MER1_type 0 219 2 1960 149 0 14 chr1 19631975 19632287 -262561377 - AluSx SINE Alu 0 308 1 439 370 19 14 chr1 19633266 19633482 -262560182 - MIR SINE MIR -33 229 13 277 263 79 56 chr1 19633544 19633737 -262559927 - MIR SINE MIR -46 216 16 396 343 23 11 chr1 19634070 19634245 -262559419 + MIR3 SINE MIR 17 193 -15 710 256 189 36 chr1 19634413 19634714 -262558950 - MLT1J2 LTR MaLR -19 431 85 203 264 78 39 chr1 19635028 19635157 -262558507 + MIR SINE MIR 86 219 -43 1752 130 173 35 chr1 19635636 19635838 -262557826 - MSTA LTR MaLR 0 428 255 2133 96 13 32 chr1 19635838 19636152 -262557512 - AluSc SINE Alu -1 308 1 1752 130 173 35 chr1 19636152 19636325 -262557339 - MSTA LTR MaLR -173 255 1 510 313 52 74 chr1 19636373 19636938 -262556726 - L2 LINE L2 0 3272 2717 187 327 39 0 chr1 19637034 19637086 -262556578 - L2 LINE L2 -1 3271 3218 267 328 104 52 chr1 19637311 19637713 -262555951 - L2 LINE L2 -338 2976 2554 382 350 95 16 chr1 19638692 19639061 -262554603 - L2 LINE L2 -20 3252 2855 380 319 14 7 chr1 19639565 19639709 -262553955 - MIR3 SINE MIR -48 160 16 308 155 0 17 chr1 19641228 19641286 -262552378 + MIR SINE MIR 76 132 -76 429 339 18 12 chr1 19642536 19642704 -262550960 - L3 LINE CR1 -114 1463 1295 365 321 0 0 chr1 19642787 19642896 -262550768 - MER81 DNA DNA -5 109 1 209 231 15 46 chr1 19643083 19643148 -262550516 + MIR SINE MIR 36 98 -164 560 264 71 30 chr1 19643325 19643344 -262550320 + MIR SINE MIR 46 63 -199 1930 124 16 72 chr1 19643344 19643730 -262549934 - THE1B LTR MaLR 0 364 1 560 264 71 30 chr1 19643730 19643907 -262549757 + MIR SINE MIR 63 250 -12 2229 107 17 0 chr1 19644417 19644708 -262548956 - AluSx SINE Alu -6 306 11 576 0 0 0 chr1 19644709 19644773 -262548891 + (TTTCC)n Simple_repeat Simple_repeat 1 64 0 859 54 20 34 chr1 19644774 19644923 -262548741 + (TTTC)n Simple_repeat Simple_repeat 2 148 0 216 260 0 65 chr1 19645305 19645382 -262548282 + MIR SINE MIR 46 117 -91 214 320 27 27 chr1 19645501 19645576 -262548088 - L2 LINE L2 -48 3224 3150 945 204 87 0 chr1 19645841 19646047 -262547617 + MER58A DNA MER1_type 1 224 0 2150 139 13 3 chr1 19646123 19646432 -262547232 + AluSx SINE Alu 1 312 0 506 285 15 0 chr1 19646434 19646571 -262547093 - MER45A DNA AcHobo -7 171 33 322 304 43 43 chr1 19647227 19647457 -262546207 + LTR33 LTR ERVL 292 521 0 910 272 104 39 chr1 19647569 19648003 -262545661 - MLT1H1 LTR MaLR -93 462 1 229 298 113 24 chr1 19648403 19648527 -262545137 + MIR3 SINE MIR 12 146 -62 198 271 168 9 chr1 19648552 19648659 -262545005 + MIR SINE MIR 23 146 -62 272 254 0 0 chr1 19648813 19648872 -262544792 + L2 LINE L2 3206 3264 -8 1493 255 33 43 chr1 19648903 19649412 -262544252 + L1ME2 LINE L1 5651 6154 -10 360 0 0 0 chr1 19649582 19649622 -262544042 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 2286 94 0 3 chr1 19649624 19649911 -262543753 - AluSx SINE Alu -26 286 1 21 57 0 0 chr1 19649919 19649954 -262543710 + AT_rich Low_complexity Low_complexity 1 35 0 393 272 103 46 chr1 19650025 19650153 -262543511 + MIR SINE MIR 7 151 -111 1643 174 43 46 chr1 19650153 19650544 -262543120 + MLT1B LTR MaLR 1 390 0 393 272 103 46 chr1 19650544 19650610 -262543054 + MIR SINE MIR 151 212 -50 670 277 106 39 chr1 19650693 19651213 -262542451 - MLT1L LTR MaLR -31 584 6 378 320 193 0 chr1 19651239 19651436 -262542228 - MIR SINE MIR -24 238 4 977 270 8 15 chr1 19652178 19652437 -262541227 + MIR SINE MIR 6 262 0 281 299 0 0 chr1 19652437 19652504 -262541160 + MER5A DNA MER1_type 91 157 -32 382 306 140 11 chr1 19654463 19654649 -262539015 + MIR SINE MIR 20 229 -33 436 168 0 59 chr1 19654667 19654741 -262538923 - L2 LINE L2 -1 3312 3244 2017 130 144 8 chr1 19654741 19655117 -262538547 - MSTA LTR MaLR -1 427 1 436 168 0 59 chr1 19655117 19655143 -262538521 - L2 LINE L2 -69 3244 3218 1540 214 58 16 chr1 19655320 19655749 -262537915 + L1MDa LINE L1 1011 1457 -5083 834 279 67 13 chr1 19655772 19656148 -262537516 - L2 LINE L2 -102 3211 2816 474 289 53 0 chr1 19656157 19656344 -262537320 - L2 LINE L2 -657 2657 2461 383 341 93 20 chr1 19656827 19657170 -262536494 - L2 LINE L2 -20 3252 2885 180 0 0 0 chr1 19657375 19657395 -262536269 + (CCA)n Simple_repeat Simple_repeat 1 20 0 445 237 9 18 chr1 19657564 19657678 -262535986 - MER81 DNA DNA -1 113 1 474 219 124 23 chr1 19658250 19658409 -262535255 - MIR3 SINE MIR -20 188 8 237 325 81 24 chr1 19658880 19659003 -262534661 - MIR SINE MIR -106 156 27 239 372 14 28 chr1 19659736 19659881 -262533783 + MIR SINE MIR 13 155 -107 264 306 0 0 chr1 19659972 19660034 -262533630 - L2 LINE L2 -107 3165 3104 424 200 229 43 chr1 19660355 19660495 -262533169 + MER96 DNA MER1_type? 1 166 -9 1053 273 102 8 chr1 19660617 19660980 -262532684 + L2 LINE L2 2916 3312 -1 2155 122 0 0 chr1 19661100 19661378 -262532286 + AluSx SINE Alu 2 279 -33 216 0 0 0 chr1 19661379 19661403 -262532261 + (TC)n Simple_repeat Simple_repeat 1 24 0 * 396 0 0 0 chr1 19661402 19661446 -262532218 + (CA)n Simple_repeat Simple_repeat 1 44 0 663 227 109 27 chr1 19662168 19662388 -262531276 + MIR SINE MIR 6 243 -19 1219 269 18 0 chr1 19665097 19665432 -262528232 - MER58B DNA MER1_type 0 341 1 974 205 25 0 chr1 19667872 19668072 -262525592 - MER3 DNA MER1_type 0 209 5 351 0 0 0 chr1 19668238 19668277 -262525387 + (TG)n Simple_repeat Simple_repeat 1 39 0 464 269 36 5 chr1 19668723 19668891 -262524773 - MIR SINE MIR -3 259 87 207 303 173 67 chr1 19668895 19669103 -262524561 + L2 LINE L2 3043 3272 0 188 311 149 37 chr1 19669783 19669944 -262523720 + MIR SINE MIR 83 261 -1 2170 109 62 11 chr1 19670786 19671143 -262522521 - THE1C LTR MaLR 0 375 1 319 342 13 34 chr1 19671348 19671497 -262522167 + MER5B DNA MER1_type 1 146 -32 1634 300 135 36 chr1 19671565 19672419 -262521245 - L2 LINE L2 -1 3312 2263 2231 124 28 3 chr1 19672419 19672774 -262520890 + THE1B LTR MaLR 1 364 0 1634 300 135 36 chr1 19672774 19673262 -262520402 - L2 LINE L2 -1050 2263 1825 351 320 0 0 chr1 19675127 19675227 -262518437 + MIR3 SINE MIR 72 171 -37 510 344 25 27 chr1 19675713 19676074 -262517590 + L2 LINE L2 2683 3036 -236 245 246 36 138 chr1 19676225 19676318 -262517346 - L2 LINE L2 -1 3312 3254 1804 166 0 19 chr1 19676318 19676625 -262517039 + AluJb SINE Alu 9 309 -3 245 246 36 138 chr1 19676625 19676755 -262516909 - L2 LINE L2 -59 3254 3112 234 363 29 0 chr1 19676799 19676901 -262516763 + L2 LINE L2 3174 3278 -35 276 91 0 0 chr1 19676907 19676951 -262516713 + (TGGA)n Simple_repeat Simple_repeat 2 45 0 474 330 67 18 chr1 19676965 19677189 -262516475 + L3 LINE CR1 1335 1569 -8 194 346 33 33 chr1 19677505 19677658 -262516006 + L2 LINE L2 2696 2848 -466 367 315 9 0 chr1 19677741 19677849 -262515815 - MIR SINE MIR -134 128 20 422 329 55 0 chr1 19678048 19678212 -262515452 - MIR SINE MIR -35 227 55 23 0 0 0 chr1 19678769 19678792 -262514872 + AT_rich Low_complexity Low_complexity 1 23 0 758 281 61 38 chr1 19679498 19679925 -262513739 + L2 LINE L2 2298 2734 -580 191 291 0 36 chr1 19680246 19680301 -262513363 + MIR SINE MIR 119 171 -91 355 288 18 9 chr1 19680314 19680425 -262513239 - MER94 DNA DNA -7 127 16 237 258 16 0 chr1 19680914 19680976 -262512688 - L2 LINE L2 -1 3312 3250 326 288 68 41 chr1 19681009 19681155 -262512509 - L1M4 LINE L1 -1820 4326 4177 607 279 6 13 chr1 19681192 19681350 -262512314 + MIR SINE MIR 30 186 -76 550 306 70 12 chr1 19681371 19681701 -262511963 - L1M4 LINE L1 -1990 4156 3808 458 305 123 13 chr1 19681740 19681976 -262511688 - L1M4 LINE L1 -1727 4419 4158 279 192 0 0 chr1 19681992 19682044 -262511620 - L2 LINE L2 -12 3260 3209 300 292 0 0 chr1 19683269 19683358 -262510306 - MIR SINE MIR -97 165 77 565 75 0 0 chr1 19683360 19683440 -262510224 - Alu SINE Alu -7 302 223 222 256 19 0 chr1 19683867 19683925 -262509739 + MIR SINE MIR 94 147 -61 931 259 56 4 chr1 19683997 19684229 -262509435 - MIR SINE MIR 0 262 19 469 330 53 42 chr1 19685024 19685309 -262508355 - L2 LINE L2 0 3272 2985 243 356 90 31 chr1 19685391 19685680 -262507984 - L2 LINE L2 -449 2865 2560 545 124 10 0 chr1 19686351 19686448 -262507216 + (TCCC)n Simple_repeat Simple_repeat 3 100 0 361 210 248 34 chr1 19686914 19687088 -262506576 + MIR SINE MIR 19 225 -37 * 711 320 151 3 chr1 19687060 19687625 -262506039 - L2 LINE L2 -7 3306 2656 847 254 108 21 chr1 19687625 19688034 -262505630 - MLT1J2 LTR MaLR 0 421 3 254 321 0 0 chr1 19688083 19688167 -262505497 - L2 LINE L2 -681 2633 2550 2539 73 3 0 chr1 19688360 19688663 -262505001 - AluY SINE Alu -7 304 1 250 319 43 55 chr1 19688689 19688852 -262504812 - MIR3 SINE MIR -3 205 45 509 341 19 12 chr1 19689051 19689288 -262504376 + MIR SINE MIR 9 244 -18 184 352 56 16 chr1 19690156 19690281 -262503383 - L2 LINE L2 -219 3053 2924 506 328 74 4 chr1 19690289 19690518 -262503146 - MIR SINE MIR -2 260 16 312 27 0 0 chr1 19690672 19690709 -262502955 + (CCCTAA)n Simple_repeat Simple_repeat 5 41 0 210 234 0 31 chr1 19690742 19690806 -262502858 + (CCCTAA)n Simple_repeat Simple_repeat 4 65 0 489 84 0 0 chr1 19691148 19691219 -262502445 + (TCCA)n Simple_repeat Simple_repeat 1 71 0 621 311 40 63 chr1 19691967 19692572 -262501092 + L2 LINE L2 2420 3015 -257 409 250 100 17 chr1 19694772 19694892 -262498772 + MIR SINE MIR 17 146 -62 534 254 88 29 chr1 19694954 19695159 -262498505 + MIR SINE MIR 36 252 -10 331 340 102 7 chr1 19695511 19695658 -262498006 + MIR SINE MIR 28 188 -74 513 273 77 10 chr1 19696230 19696439 -262497225 + MIR SINE MIR 34 256 -6 2636 163 2 47 chr1 19696646 19697155 -262496509 - MER66B LTR ERV1 0 486 1 219 367 0 10 chr1 19697476 19697574 -262496090 + MIR SINE MIR 155 251 -11 1970 181 3 6 chr1 19697626 19697964 -262495700 + MER66B LTR ERV1 3 339 -147 597 256 89 25 chr1 19698096 19698299 -262495365 - LTR16C LTR ERVL 0 491 276 628 242 46 7 chr1 19698307 19698460 -262495204 - MER5A DNA MER1_type -8 181 23 477 192 31 54 chr1 19698465 19698595 -262495069 - LTR16C LTR ERVL -195 296 170 543 285 90 5 chr1 19698705 19698905 -262494759 + MIR SINE MIR 40 256 -6 223 319 21 21 chr1 19699973 19700067 -262493597 + MER5A DNA MER1_type 39 132 -57 325 275 0 0 chr1 19700635 19700715 -262492949 + MIR SINE MIR 183 262 0 235 290 48 0 chr1 19700761 19700823 -262492841 + MIR SINE MIR 85 149 -59 313 223 23 115 chr1 19701321 19701451 -262492213 + MER46C DNA MER2_type 1 118 -220 * 796 294 19 8 chr1 19701443 19701705 -262491959 + MER46C DNA MER2_type 73 337 -1 1068 249 19 4 chr1 19702410 19702667 -262490997 - MIR SINE MIR -1 261 1 668 275 70 39 chr1 19702808 19703066 -262490598 - MLT1H LTR MaLR -207 342 77 857 233 98 0 chr1 19704107 19704300 -262489364 + MER58A DNA MER1_type 13 224 0 593 231 0 15 chr1 19704300 19704430 -262489234 + L2 LINE L2 3186 3313 0 380 319 14 7 chr1 19704501 19704645 -262489019 - MIR3 SINE MIR -48 160 16 310 155 0 17 chr1 19706164 19706222 -262487442 + MIR SINE MIR 76 132 -76 441 348 17 11 chr1 19707473 19707651 -262486013 - L3 LINE CR1 -114 1463 1285 366 321 0 0 chr1 19707724 19707833 -262485831 - MER81 DNA DNA -5 109 1 214 231 15 46 chr1 19708020 19708085 -262485579 + MIR SINE MIR 36 98 -164 580 264 71 30 chr1 19708262 19708281 -262485383 + MIR SINE MIR 46 63 -199 2089 124 16 72 chr1 19708281 19708667 -262484997 - THE1B LTR MaLR 0 364 1 580 264 71 30 chr1 19708667 19708844 -262484820 + MIR SINE MIR 63 250 -12 2100 109 17 0 chr1 19709352 19709645 -262484019 - AluSx SINE Alu -4 308 11 918 103 0 0 chr1 19709646 19709782 -262483882 + (TTTCC)n Simple_repeat Simple_repeat 4 139 0 520 40 13 13 chr1 19709782 19709858 -262483806 + (TTTC)n Simple_repeat Simple_repeat 2 77 0 224 260 0 65 chr1 19710240 19710317 -262483347 + MIR SINE MIR 46 117 -91 215 320 27 27 chr1 19710436 19710511 -262483153 - L2 LINE L2 -48 3224 3150 1033 204 87 0 chr1 19710776 19710982 -262482682 + MER58A DNA MER1_type 1 224 0 2018 139 13 3 chr1 19711058 19711367 -262482297 + AluSx SINE Alu 1 312 0 523 277 15 0 chr1 19711369 19711506 -262482158 - MER45A DNA AcHobo -7 171 33 344 304 43 43 chr1 19712162 19712392 -262481272 + LTR33 LTR ERVL 292 521 0 965 272 104 39 chr1 19712504 19712938 -262480726 - MLT1H1 LTR MaLR -93 462 1 242 298 113 24 chr1 19713338 19713462 -262480202 + MIR3 SINE MIR 12 146 -62 214 271 168 9 chr1 19713487 19713594 -262480070 + MIR SINE MIR 23 146 -62 278 254 0 0 chr1 19713750 19713809 -262479855 + L2 LINE L2 3206 3264 -8 1517 258 31 39 chr1 19713840 19714348 -262479316 + L1ME2 LINE L1 5651 6154 -10 411 21 0 0 chr1 19714518 19714566 -262479098 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 2020 99 0 4 chr1 19714568 19714840 -262478824 - AluSx SINE Alu -26 286 16 354 23 0 0 chr1 19714842 19714885 -262478779 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1783 158 0 7 chr1 19714885 19715170 -262478494 - AluJb SINE Alu -29 283 1 436 302 205 15 chr1 19715452 19715720 -262477944 + L2 LINE L2 2994 3312 -1 523 268 56 22 chr1 19715809 19715988 -262477676 - MIR3 SINE MIR -12 196 12 245 316 33 79 chr1 19716622 19716774 -262476890 + L2 LINE L2 2630 2774 -540 491 261 52 0 chr1 19716823 19716957 -262476707 - MIR SINE MIR -12 250 110 534 189 0 0 chr1 19717417 19717528 -262476136 + (TGAA)n Simple_repeat Simple_repeat 4 114 0 2040 108 3 23 chr1 19717593 19717899 -262475765 + AluSx SINE Alu 2 301 -11 324 294 100 6 chr1 19718229 19718399 -262475265 + MIR3 SINE MIR 2 187 -21 262 303 34 107 chr1 19718506 19718684 -262474980 + MER5A DNA MER1_type 16 180 -9 396 40 0 0 chr1 19718946 19718996 -262474668 + (CA)n Simple_repeat Simple_repeat 2 51 0 192 380 54 16 chr1 19720087 19720216 -262473448 + MIR SINE MIR 28 161 -101 * 241 292 80 36 chr1 19720206 19720343 -262473321 - L2 LINE L2 -1 3312 3170 200 294 0 0 chr1 19720384 19720435 -262473229 + L2 LINE L2 3220 3270 -43 268 276 40 0 chr1 19720627 19720703 -262472961 - L2 LINE L2 0 3313 3235 389 324 30 8 chr1 19720823 19721025 -262472639 - MIR SINE MIR -40 222 19 183 80 0 0 chr1 19721499 19721524 -262472140 + (T)n Simple_repeat Simple_repeat 1 25 0 184 298 21 0 chr1 19722160 19722207 -262471457 + MIR SINE MIR 215 262 0 390 255 93 69 chr1 19722225 19722429 -262471235 - MIR SINE MIR -26 236 28 219 225 42 14 chr1 19722540 19722611 -262471053 + MIR SINE MIR 82 154 -108 237 218 18 18 chr1 19722630 19722685 -262470979 - L2 LINE L2 -18 3254 3200 188 194 242 0 chr1 19723044 19723106 -262470558 + L2 LINE L2 3213 3289 -24 304 290 129 0 chr1 19723121 19723214 -262470450 - L2 LINE L2 0 3313 3209 2651 29 0 0 chr1 19723214 19723524 -262470140 + AluYa5 SINE Alu 1 310 -1 22 0 0 0 chr1 19723524 19723546 -262470118 + AT_rich Low_complexity Low_complexity 1 22 0 1268 91 6 11 chr1 19723546 19723744 -262469920 + AluY SINE Alu 118 311 0 339 234 131 19 chr1 19724365 19724472 -262469192 - MIR SINE MIR -70 192 74 309 325 0 0 chr1 19725780 19725857 -262467807 + MIR SINE MIR 69 145 -63 881 163 4 114 chr1 19725927 19726154 -262467510 - MER20 DNA MER1_type -2 217 16 432 296 127 31 chr1 19727663 19728093 -262465571 + L2 LINE L2 2608 3091 -181 334 326 81 17 chr1 19728538 19728710 -262464954 - MIR SINE MIR -79 183 1 211 368 9 0 chr1 19728962 19729068 -262464596 + L2 LINE L2 2915 3021 -251 375 296 35 0 chr1 19729462 19729577 -262464087 + L2 LINE L2 3153 3271 -1 296 304 24 48 chr1 19730242 19730367 -262463297 + MIR SINE MIR 18 139 -123 250 286 89 54 chr1 19730420 19730588 -262463076 + MIR SINE MIR 38 211 -51 190 153 0 119 chr1 19730722 19730781 -262462883 - MIR SINE MIR -74 188 137 339 267 0 0 chr1 19730847 19730933 -262462731 - MIR3 SINE MIR -42 166 81 195 184 53 0 chr1 19731501 19731539 -262462125 + MIR SINE MIR 78 117 -91 253 304 83 58 chr1 19731625 19731937 -262461727 - L2 LINE L2 0 3313 2994 583 272 42 26 chr1 19732013 19732204 -262461460 + LTR16C LTR ERVL 80 273 -218 262 264 28 0 chr1 19732232 19732304 -262461360 + L2 LINE L2 3234 3307 -6 364 235 144 0 chr1 19732436 19732568 -262461096 + LTR16C LTR ERVL 317 467 -24 665 289 67 18 chr1 19732585 19733024 -262460640 - MER39 LTR ERV1 -41 666 2 516 290 166 54 chr1 19733309 19733568 -262460096 + L2 LINE L2 2985 3272 0 641 323 36 66 chr1 19733684 19733889 -262459775 - L2 LINE L2 -2 3311 3101 1529 184 87 16 chr1 19733889 19734210 -262459454 + MER2 DNA MER2_type 1 344 0 641 323 36 66 chr1 19734210 19734475 -262459189 - L2 LINE L2 -212 3101 2855 272 194 14 56 chr1 19734628 19734700 -262458964 - MER39 LTR ERV1 -634 73 5 268 311 119 13 chr1 19735115 19735266 -262458398 + L2 LINE L2 3101 3267 -5 755 178 8 0 chr1 19736267 19736396 -262457268 + FLAM_C SINE Alu 10 139 -4 339 206 54 99 chr1 19736457 19736620 -262457044 - MER5A DNA MER1_type -16 170 7 234 298 0 36 chr1 19737246 19737330 -262456334 + L2 LINE L2 3189 3269 -3 236 330 17 8 chr1 19737443 19737561 -262456103 - MIR SINE MIR -118 144 26 2041 106 3 3 chr1 19737635 19737954 -262455710 - AluSx SINE Alu 0 319 1 181 318 239 0 chr1 19739420 19739508 -262454156 + L2 LINE L2 3161 3269 -3 252 268 0 0 chr1 19740011 19740067 -262453597 - L2 LINE L2 -64 3249 3194 192 200 200 0 chr1 19740146 19740211 -262453453 + MER5B DNA MER1_type 101 178 0 486 340 64 31 chr1 19740321 19740712 -262452952 - L2 LINE L2 -710 2604 2201 434 225 94 14 chr1 19740740 19740878 -262452786 - MIR3 SINE MIR -26 182 34 417 39 0 0 chr1 19741011 19741062 -262452602 + (CA)n Simple_repeat Simple_repeat 2 52 0 1101 60 21 20 chr1 19741496 19741937 -262451727 + (TGGA)n Simple_repeat Simple_repeat 1 441 0 314 348 18 0 chr1 19742157 19742269 -262451395 - MIR SINE MIR -62 146 33 664 301 99 32 chr1 19742331 19742914 -262450750 + L2 LINE L2 2652 3273 -40 300 310 23 39 chr1 19743007 19743136 -262450528 + MIR3 SINE MIR 37 163 -45 855 265 15 0 chr1 19743682 19743882 -262449782 - MIR SINE MIR -10 252 50 206 370 110 7 chr1 19744022 19744176 -262449488 + MIR SINE MIR 65 234 -28 206 261 0 0 chr1 19744664 19744710 -262448954 - L2 LINE L2 0 3272 3227 311 295 27 9 chr1 19744799 19744911 -262448753 - MIR SINE MIR -40 222 109 697 277 115 13 chr1 19745597 19745832 -262447832 - MIR SINE MIR 0 262 4 232 244 219 42 chr1 19746559 19746678 -262446986 - L1ME3 LINE L1 -83 6079 5940 958 264 96 38 chr1 19746700 19746963 -262446701 - L1ME3 LINE L1 -294 5868 5579 2317 176 28 26 chr1 19746963 19747429 -262446235 - MLT1C LTR MaLR 0 467 1 958 264 96 38 chr1 19747429 19747509 -262446155 - L1ME3 LINE L1 -583 5579 5505 650 264 131 48 chr1 19747878 19747898 -262445766 + L2 LINE L2 2974 2991 -322 2450 108 30 25 chr1 19747898 19748260 -262445404 - THE1B LTR MaLR 0 364 1 650 264 131 48 chr1 19748260 19748553 -262445111 + L2 LINE L2 2991 3313 0 2483 175 59 2 chr1 19748686 19749143 -262444521 - MLT1D LTR MaLR 0 505 23 280 346 53 15 chr1 19749188 19749321 -262444343 + L2 LINE L2 3118 3255 -17 813 214 71 20 chr1 19749670 19749866 -262443798 + MIR SINE MIR 33 238 -24 332 254 0 0 chr1 19749896 19749963 -262443701 - L2 LINE L2 -16 3256 3190 410 304 36 10 chr1 19750002 19750144 -262443520 - MIR SINE MIR -61 147 19 578 320 40 18 chr1 19750810 19751038 -262442626 - MIR SINE MIR -27 235 3 373 366 39 32 chr1 19751549 19751858 -262441806 + L2 LINE L2 3003 3313 0 713 171 33 8 chr1 19751862 19752234 -262441430 + (TGGA)n Simple_repeat Simple_repeat 1 381 0 704 179 20 119 chr1 19752993 19753194 -262440470 + MIR SINE MIR 82 262 0 209 320 40 0 chr1 19753192 19753267 -262440397 - L2 LINE L2 -6 3307 3230 * 314 307 199 6 chr1 19753339 19753505 -262440159 + MIR SINE MIR 65 262 0 609 317 20 5 chr1 19753580 19753782 -262439882 - MIR SINE MIR -55 207 3 885 232 68 5 chr1 19754097 19754325 -262439339 - MIR SINE MIR -22 240 6 309 109 0 0 chr1 19754766 19754812 -262438852 + (TG)n Simple_repeat Simple_repeat 2 47 0 345 322 0 78 chr1 19755021 19755201 -262438463 + Charlie8 DNA MER1_type 7 172 -2245 1551 236 52 33 chr1 19755322 19755780 -262437884 - MLT1J LTR MaLR -2 509 43 835 221 20 74 chr1 19756053 19756351 -262437313 + L2 LINE L2 3032 3313 0 448 277 26 39 chr1 19757040 19757195 -262436469 + MIR SINE MIR 47 199 -63 218 306 47 0 chr1 19757635 19757720 -262435944 + MIR SINE MIR 29 117 -145 551 216 34 83 chr1 19757737 19757766 -262435898 + MIR SINE MIR 1 30 -232 1336 202 94 57 chr1 19757766 19758118 -262435546 - MLT1A1 LTR MaLR 0 365 1 551 216 34 83 chr1 19758118 19758292 -262435372 + MIR SINE MIR 30 194 -68 253 237 184 44 chr1 19758290 19758404 -262435260 - MIR SINE MIR -122 140 11 * 227 250 0 0 chr1 19758449 19758497 -262435167 + L2 LINE L2 3205 3252 -20 188 220 80 0 chr1 19759635 19759685 -262433979 - MIR SINE MIR -73 135 82 209 250 167 10 chr1 19760832 19760928 -262432736 + MIR3 SINE MIR 54 164 -44 268 216 0 0 chr1 19763638 19763689 -262429975 + L1ME1 LINE L1 5558 5608 -2177 1191 273 63 8 chr1 19763771 19764205 -262429459 + L1ME1 LINE L1 5702 6161 -5 2001 172 3 6 chr1 19764453 19764819 -262428845 - MER47A DNA MER2_type -1 365 1 277 295 39 0 chr1 19764825 19764903 -262428761 + L2 LINE L2 3221 3301 -12 195 323 0 15 chr1 19764947 19765012 -262428652 - MIR SINE MIR -21 241 178 434 306 8 8 chr1 19765660 19765781 -262427883 - MIR SINE MIR -72 136 16 184 178 0 0 chr1 19765950 19765995 -262427669 - L2 LINE L2 -208 3064 3020 458 200 61 0 chr1 19766645 19766760 -262426904 + L1MD3 LINE L1 7869 7990 -5 318 389 0 0 chr1 19766813 19766980 -262426684 + G-rich Low_complexity Low_complexity 2 168 0 1189 203 8 8 chr1 19767077 19767328 -262426336 - L1MC1 LINE L1 0 6333 6083 3320 86 12 4 chr1 19767432 19767918 -262425746 - L1PB1 LINE L1 0 6151 5662 318 352 98 27 chr1 19767933 19768268 -262425396 - L2 LINE L2 -559 2755 2397 295 368 68 18 chr1 19769826 19769989 -262423675 - MIR SINE MIR -72 190 20 1302 256 35 0 chr1 19770107 19770423 -262423241 + MER58B DNA MER1_type 1 327 -14 209 194 6 3 chr1 19770739 19770780 -262422884 + MIR SINE MIR 113 155 -53 335 290 49 15 chr1 19771807 19771940 -262421724 + MIR3 SINE MIR 57 193 -15 611 240 20 7 chr1 19772653 19772799 -262420865 - MIR SINE MIR -37 225 78 275 164 36 82 chr1 19773005 19773056 -262420608 + MIR3 SINE MIR 89 141 -67 2304 138 28 3 chr1 19773056 19773411 -262420253 - THE1B LTR MaLR 0 364 1 275 164 36 82 chr1 19773411 19773469 -262420195 + MIR3 SINE MIR 141 193 -15 226 286 14 29 chr1 19773479 19773549 -262420115 - MIR SINE MIR -117 145 77 399 294 25 0 chr1 19773564 19773683 -262419981 + MIR SINE MIR 92 213 -49 344 351 0 0 chr1 19774112 19774223 -262419441 - MIR SINE MIR -71 191 81 341 279 35 35 chr1 19775437 19775609 -262418055 - MIR SINE MIR -72 190 19 1768 169 33 3 chr1 19775766 19776067 -262417597 + AluJb SINE Alu 3 312 0 192 204 0 41 chr1 19776245 19776294 -262417370 + MIR SINE MIR 21 67 -141 397 243 156 98 chr1 19776444 19776720 -262416944 - L2 LINE L2 -1 3312 3021 380 208 58 50 chr1 19776743 19776863 -262416801 - L2 LINE L2 0 3313 3193 1045 213 35 42 chr1 19776897 19777184 -262416480 - MLT1C LTR MaLR -3 464 180 998 146 20 4 chr1 19777199 19777454 -262416210 + CT-rich Low_complexity Low_complexity 1 259 0 506 192 77 0 chr1 19777465 19777569 -262416095 - FLAM_C SINE Alu -27 116 5 791 194 39 6 chr1 19777576 19777756 -262415908 - MLT1C LTR MaLR -281 186 1 600 257 77 6 chr1 19777836 19778019 -262415645 - MIR SINE MIR -9 253 58 238 65 22 22 chr1 19778366 19778412 -262415252 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 2108 129 7 0 chr1 19778414 19778708 -262414956 - AluSx SINE Alu -16 296 1 4607 201 7 16 chr1 19778726 19780132 -262413532 - L1MB8 LINE L1 -7 6171 4779 1302 139 0 5 chr1 19780513 19780700 -262412964 - AluJo SINE Alu -42 270 85 2092 149 3 0 chr1 19781690 19781998 -262411666 - AluSx SINE Alu -3 309 1 641 260 160 14 chr1 19781998 19782217 -262411447 - MIR SINE MIR -4 258 8 257 286 155 43 chr1 19782214 19782375 -262411289 + MIR SINE MIR 64 242 -20 * 347 320 124 5 chr1 19782547 19782741 -262410923 + MIR SINE MIR 14 230 -32 307 196 49 12 chr1 19783624 19783719 -262409945 - MIR SINE MIR -85 123 25 204 100 0 0 chr1 19783855 19783885 -262409779 - MIR SINE MIR -114 148 119 849 267 27 4 chr1 19784309 19784534 -262409130 - MIR SINE MIR -2 260 31 685 321 8 12 chr1 19785322 19785565 -262408099 - MIR SINE MIR 0 262 21 347 303 123 0 chr1 19785967 19786089 -262407575 - MIR SINE MIR -4 258 122 758 147 0 16 chr1 19786090 19786219 -262407445 + FLAM_C SINE Alu 2 128 -5 271 280 47 9 chr1 19786244 19786351 -262407313 - MIR SINE MIR -127 135 25 316 342 40 13 chr1 19787345 19787497 -262406167 - MIR3 SINE MIR -33 175 20 710 220 43 38 chr1 19788649 19788835 -262404829 - MER5A DNA MER1_type 0 189 3 399 303 122 64 chr1 19789705 19790192 -262403472 - L2 LINE L2 0 3313 2799 467 294 129 51 chr1 19790254 19790625 -262403039 - L2 LINE L2 -12 3260 2861 197 259 24 12 chr1 19790615 19790700 -262402964 - L2 LINE L2 -260 3053 2968 * 372 292 22 87 chr1 19791247 19791432 -262402232 - MIR SINE MIR -56 206 34 2168 131 3 0 chr1 19792144 19792449 -262401215 - AluSp SINE Alu -7 306 1 390 393 12 0 chr1 19793017 19793190 -262400474 + G-rich Low_complexity Low_complexity 5 179 0 297 388 10 0 chr1 19793204 19793355 -262400309 + G-rich Low_complexity Low_complexity 1 152 0 * 316 416 17 0 chr1 19793283 19793456 -262400208 + (CAGAGA)n Simple_repeat Simple_repeat 5 180 0 243 286 0 0 chr1 19793467 19793572 -262400092 + G-rich Low_complexity Low_complexity 1 105 0 337 356 10 0 chr1 19793583 19793684 -262399980 + G-rich Low_complexity Low_complexity 3 104 0 333 267 0 0 chr1 19793695 19793811 -262399853 + G-rich Low_complexity Low_complexity 3 118 0 310 371 29 0 chr1 19794413 19794553 -262399111 + MIR3 SINE MIR 12 155 -53 1135 186 114 10 chr1 19794553 19794843 -262398821 - MER33 DNA MER1_type 0 324 5 740 236 99 14 chr1 19794982 19795194 -262398470 - MIR SINE MIR -30 232 3 1877 159 0 43 chr1 19795296 19795622 -262398042 + AluJo SINE Alu 1 312 0 186 133 0 0 chr1 19795622 19795652 -262398012 + (GA)n Simple_repeat Simple_repeat 1 30 0 1148 103 0 6 chr1 19795654 19795829 -262397835 + (GGAA)n Simple_repeat Simple_repeat 3 176 0 718 246 50 20 chr1 19796223 19796422 -262397242 + MIR SINE MIR 21 225 -37 364 258 91 45 chr1 19796732 19796864 -262396800 + L2 LINE L2 3127 3264 -8 483 320 36 10 chr1 19797083 19797277 -262396387 - MIR SINE MIR -44 218 20 333 228 13 13 chr1 19797503 19797582 -262396082 + L2 LINE L2 2695 2773 -541 233 216 0 91 chr1 19797724 19797812 -262395852 + MER63 DNA MER1_type 979 1058 -2 370 183 0 0 chr1 19797909 19797969 -262395695 + AluSc SINE Alu 125 184 -115 261 248 0 89 chr1 19798148 19798249 -262395415 + L2 LINE L2 3141 3232 -81 227 281 67 11 chr1 19798864 19798953 -262394711 - MIR SINE MIR -71 137 44 238 226 0 32 chr1 19799010 19799072 -262394592 + GA-rich Low_complexity Low_complexity 1 60 0 265 246 46 0 chr1 19801221 19801286 -262392378 - MIR SINE MIR -85 177 110 313 327 103 10 chr1 19803594 19803814 -262389850 - MIR SINE MIR -13 249 2 2113 110 20 7 chr1 19803917 19804216 -262389448 - AluSx SINE Alu -8 304 2 529 202 330 0 chr1 19804260 19804448 -262389216 - MIR SINE MIR 0 262 13 2214 125 0 23 chr1 19804537 19804841 -262388823 + AluSg SINE Alu 1 297 -13 232 222 103 43 chr1 19805480 19805596 -262388068 + MIR SINE MIR 37 154 -59 * 362 262 172 60 chr1 19805589 19805822 -262387842 - MIR SINE MIR 0 262 4 215 163 23 0 chr1 19806092 19806135 -262387529 + L2 LINE L2 3016 3059 -213 962 253 72 15 chr1 19806234 19806566 -262387098 + L2 LINE L2 2400 2750 -564 * 2460 227 65 28 chr1 19806564 19807603 -262386061 + L1ME2 LINE L1 4786 5879 -285 2181 141 0 0 chr1 19807603 19807900 -262385764 + AluSx SINE Alu 1 297 -15 2460 227 65 28 chr1 19807900 19808042 -262385622 + L1ME2 LINE L1 5879 6014 -150 309 284 74 7 chr1 19808042 19808190 -262385474 + L2 LINE L2 3015 3172 -141 455 266 31 0 chr1 19808283 19808411 -262385253 - L1ME2 LINE L1 -2 6162 6031 196 281 114 26 chr1 19808411 19808525 -262385139 + L2 LINE L2 3190 3313 0 233 318 57 0 chr1 19808542 19808630 -262385034 + MIR SINE MIR 170 262 0 190 315 34 56 chr1 19808625 19808714 -262384950 + L2 LINE L2 3226 3312 -1 * 1053 207 0 12 chr1 19808718 19809226 -262384438 + (TGGA)n Simple_repeat Simple_repeat 4 327 0 420 287 78 0 chr1 19809456 19809585 -262384079 - MIR3 SINE MIR -51 157 19 286 378 86 5 chr1 19810026 19810235 -262383429 + MIR SINE MIR 31 256 -6 259 301 206 0 chr1 19810548 19810684 -262382980 + MIR SINE MIR 97 260 -2 468 226 188 31 chr1 19811291 19811578 -262382086 + L2 LINE L2 2922 3253 -60 201 74 0 0 chr1 19811611 19811638 -262382026 + (TGAG)n Simple_repeat Simple_repeat 1 27 0 336 301 128 13 chr1 19811646 19811802 -262381862 + MIR3 SINE MIR 20 193 -15 390 244 65 24 chr1 19812010 19812133 -262381531 + MIR SINE MIR 19 146 -62 479 291 42 26 chr1 19812278 19812467 -262381197 + L2 LINE L2 3078 3269 -3 186 43 0 0 chr1 19812473 19812496 -262381168 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 323 303 76 8 chr1 19813504 19813636 -262380028 + MIR SINE MIR 88 228 -34 199 236 0 111 chr1 19814408 19814480 -262379184 - MIR SINE MIR -171 91 28 382 234 6 77 chr1 19815048 19815214 -262378450 - MLT1H LTR MaLR -13 536 404 245 306 122 51 chr1 19815235 19815431 -262378233 - MLT1I LTR MaLR -114 295 86 634 261 67 62 chr1 19815623 19815691 -262377973 - MLT1J2 LTR MaLR -5 404 338 2400 142 26 21 chr1 19815691 19816113 -262377551 + MSTA LTR MaLR 1 424 -4 634 261 67 62 chr1 19816113 19816252 -262377412 - MLT1J2 LTR MaLR -71 338 201 2367 149 66 23 chr1 19816252 19816734 -262376930 + MLT1D LTR MaLR 1 503 -2 634 261 67 62 chr1 19816734 19816889 -262376775 - MLT1J2 LTR MaLR -208 201 33 1415 292 97 17 chr1 19817334 19818321 -262375343 + L2 LINE L2 2228 3292 -21 206 62 31 0 chr1 19818329 19818361 -262375303 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 258 319 121 17 chr1 19818370 19818486 -262375178 - L2 LINE L2 -24 3248 3121 366 310 48 86 chr1 19819246 19819536 -262374128 - L2 LINE L2 0 3272 2994 383 283 9 9 chr1 19820876 19821027 -262372637 + G-rich Low_complexity Low_complexity 1 151 0 216 318 9 9 chr1 19821174 19821281 -262372383 + GA-rich Low_complexity Low_complexity 1 107 0 * 473 126 43 44 chr1 19821208 19821616 -262372048 + (CAGAGA)n Simple_repeat Simple_repeat 1 407 0 278 240 16 32 chr1 19821617 19821742 -262371922 + GA-rich Low_complexity Low_complexity 2 124 0 599 266 82 20 chr1 19822318 19822562 -262371102 + MIR SINE MIR 3 261 -1 458 258 159 0 chr1 19822660 19822811 -262370853 + MER5A DNA MER1_type 9 183 -6 2306 113 7 0 chr1 19823225 19823535 -262370129 + AluSx SINE Alu 1 312 0 243 309 43 11 chr1 19823758 19823852 -262369812 - MIR SINE MIR -60 148 52 722 275 107 0 chr1 19823932 19824165 -262369499 - LTR16C LTR ERVL -1 490 233 1756 166 65 3 chr1 19824433 19824741 -262368923 + MLT1A1 LTR MaLR 31 357 -8 369 282 57 8 chr1 19825038 19825162 -262368502 + MIR SINE MIR 19 148 -114 764 296 15 0 chr1 19825216 19825415 -262368249 - MIR SINE MIR -9 253 52 216 229 0 0 chr1 19825457 19825505 -262368159 + L2 LINE L2 3213 3260 -12 778 247 31 51 chr1 19825604 19825859 -262367805 + MIR SINE MIR 13 262 0 258 320 80 27 chr1 19826047 19826197 -262367467 - MIR SINE MIR -55 207 50 205 269 15 112 chr1 19826537 19826671 -262366993 - MIR SINE MIR -65 143 23 420 297 103 0 chr1 19827795 19827970 -262365694 - MIR SINE MIR 0 262 70 1882 184 17 0 chr1 19827975 19828333 -262365331 - MLT1B LTR MaLR -3 387 24 222 294 12 0 chr1 19828346 19828431 -262365233 + L2 LINE L2 2177 2262 -1052 255 167 0 0 chr1 19828583 19828625 -262365039 - MLT1C LTR MaLR -386 81 40 644 184 0 32 chr1 19828631 19828756 -262364908 + FLAM_C SINE Alu 7 127 -16 4455 22 9 0 chr1 19828756 19829293 -262364371 - L1PA3 LINE L1 -1 6154 5613 287 150 0 19 chr1 19829293 19829346 -262364318 + FLAM SINE Alu 79 118 -15 465 311 173 11 chr1 19829531 19829814 -262363850 + L1ME3A LINE L1 5809 6137 -33 * 470 223 134 0 chr1 19829813 19829970 -262363694 + L1MD3 LINE L1 7818 7995 0 23 33 0 0 chr1 19830052 19830082 -262363582 + AT_rich Low_complexity Low_complexity 1 30 0 291 106 0 0 chr1 19830086 19830133 -262363531 + L1ME3A LINE L1 6124 6170 0 393 312 79 42 chr1 19830202 19830417 -262363247 - MIR SINE MIR -20 242 20 397 238 0 0 chr1 19831209 19831293 -262362371 + MER103 DNA DNA 38 121 -45 311 250 37 19 chr1 19831436 19831549 -262362115 - MIR SINE MIR -65 143 51 2652 114 46 2 chr1 19831571 19831983 -262361681 + MSTB1 LTR MaLR 1 430 -2 253 301 27 62 chr1 19832161 19832307 -262361357 - MIR SINE MIR -65 197 57 2932 177 26 0 chr1 19832845 19833392 -262360272 + MER68 LTR ERV1 2 562 0 1695 185 84 15 chr1 19833434 19833769 -262359895 + MLT1A1 LTR MaLR 8 365 0 330 300 17 17 chr1 19833769 19833889 -262359775 - MER5A DNA MER1_type -69 120 1 623 283 64 34 chr1 19834590 19834855 -262358809 - L2 LINE L2 0 3313 3041 280 313 75 0 chr1 19835812 19835946 -262357718 - MIR3 SINE MIR -57 151 8 244 262 173 47 chr1 19836020 19836211 -262357453 + MIR SINE MIR 47 261 -1 180 0 0 0 chr1 19836346 19836366 -262357298 + (A)n Simple_repeat Simple_repeat 1 20 0 328 355 7 26 chr1 19836575 19836619 -262357045 - MER5A DNA MER1_type -15 174 131 1749 157 9 53 chr1 19836619 19836937 -262356727 + AluJo SINE Alu 1 304 -8 328 355 7 26 chr1 19836937 19837044 -262356620 - MER5A DNA MER1_type -58 131 26 460 336 51 25 chr1 19837266 19837501 -262356163 + MIR SINE MIR 20 260 -2 186 118 0 0 chr1 19837697 19837731 -262355933 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 1912 182 3 0 chr1 19837881 19838177 -262355487 - AluJb SINE Alu -15 297 1 816 275 90 24 chr1 19838203 19838537 -262355127 - MLT1H LTR MaLR -162 387 32 265 302 28 38 chr1 19838646 19838752 -262354912 - L2 LINE L2 0 3313 3209 237 233 0 0 chr1 19838780 19838840 -262354824 + MIR SINE MIR 60 119 -89 21 36 0 0 chr1 19839236 19839264 -262354400 + AT_rich Low_complexity Low_complexity 1 28 0 205 369 114 13 chr1 19839520 19839669 -262353995 - MIR SINE MIR -79 183 20 236 197 0 15 chr1 19839751 19839817 -262353847 + GA-rich Low_complexity Low_complexity 3 67 0 418 302 131 34 chr1 19840040 19840490 -262353174 + L2 LINE L2 2499 3038 -234 185 259 353 0 chr1 19840489 19840574 -262353090 - L2 LINE L2 0 3313 3199 * 372 299 103 0 chr1 19840750 19840867 -262352797 + LTR16C LTR ERVL 94 222 -269 615 297 75 30 chr1 19840869 19841314 -262352350 - MLT1H LTR MaLR 0 549 39 909 252 35 8 chr1 19841335 19841593 -262352071 + LTR16C LTR ERVL 220 484 -7 449 196 11 0 chr1 19842446 19842538 -262351126 - MIR SINE MIR 0 262 170 886 113 0 0 chr1 19842538 19842653 -262351011 + AluSp SINE Alu 1 115 -198 278 98 0 0 chr1 19842654 19842695 -262350969 + AluSp/q SINE Alu 252 292 -11 235 60 200 0 chr1 19842697 19842747 -262350917 - MIR SINE MIR -82 180 121 219 130 0 87 chr1 19842799 19842845 -262350819 - L2 LINE L2 -4 3268 3227 249 360 0 12 chr1 19842850 19842936 -262350728 - MIR SINE MIR -174 88 4 338 369 58 36 chr1 19843035 19843344 -262350320 - L2 LINE L2 -86 3186 2871 355 247 0 0 chr1 19843574 19843651 -262350013 - MER103 DNA DNA -87 79 3 496 255 107 29 chr1 19843818 19844061 -262349603 - MIR SINE MIR 0 262 1 1862 175 13 7 chr1 19844624 19844927 -262348737 - AluJb SINE Alu -7 305 1 305 296 88 49 chr1 19845780 19846006 -262347658 + MIR SINE MIR 28 262 0 448 246 77 8 chr1 19846398 19846528 -262347136 - MIR SINE MIR -111 151 13 310 319 191 9 chr1 19847392 19847602 -262346062 - MIR SINE MIR 0 262 15 327 250 24 0 chr1 19847606 19847690 -262345974 + MIR SINE MIR 60 145 -63 1331 195 29 20 chr1 19848160 19848455 -262345209 + LTR10B LTR ERV1 221 547 0 191 337 69 0 chr1 19848456 19848557 -262345107 - MIR SINE MIR -108 154 47 325 276 26 43 chr1 19848642 19848758 -262344906 - MER81 DNA DNA 0 114 1 571 241 15 8 chr1 19849510 19849643 -262344021 + MIR3 SINE MIR 14 147 -61 213 128 26 0 chr1 19849901 19849940 -262343724 + C-rich Low_complexity Low_complexity 1 40 0 532 289 134 47 chr1 19850386 19850850 -262342814 + L2 LINE L2 2159 2662 -652 293 250 104 0 chr1 19851190 19851286 -262342378 + LTR16C LTR ERVL 386 491 0 257 308 60 0 chr1 19851287 19851420 -262342244 + L2 LINE L2 2640 2780 -534 259 256 22 56 chr1 19851432 19851522 -262342142 + LTR29 LTR ERV1 1 87 -535 248 220 37 83 chr1 19851496 19851605 -262342059 + MER39 LTR ERV1 249 352 -355 * 1200 215 4 9 chr1 19851607 19851835 -262341829 + AluJo SINE Alu 1 227 -85 3982 123 13 19 chr1 19851835 19852463 -262341201 + MER41B LTR ERV1 3 626 -9 395 134 0 0 chr1 19852470 19852537 -262341127 + AluJo SINE Alu 235 301 -1 * 655 219 144 88 chr1 19852533 19852642 -262341022 + MER39 LTR ERV1 340 441 -266 2183 108 0 0 chr1 19852642 19852954 -262340710 + AluSc SINE Alu 3 314 0 655 219 144 88 chr1 19852954 19853163 -262340501 + MER39 LTR ERV1 441 677 -30 390 86 0 0 chr1 19853163 19853221 -262340443 - MER4B LTR ERV1 0 610 553 415 145 29 0 chr1 19853221 19853313 -262340351 + AluSp/q SINE Alu 217 310 0 2339 112 14 6 chr1 19853314 19853663 -262340001 - MER4B LTR ERV1 -258 352 1 2568 181 45 38 chr1 19853752 19854327 -262339337 - MER34C LTR ERV1 -6 579 1 253 294 92 16 chr1 19854327 19854511 -262339153 + L2 LINE L2 2886 3083 -189 180 152 0 0 chr1 19854693 19854726 -262338938 + GA-rich Low_complexity Low_complexity 2 34 0 3594 151 62 30 chr1 19854726 19855050 -262338614 - LTR8A LTR ERV1 0 727 415 2207 140 3 0 chr1 19855050 19855358 -262338306 + AluSx SINE Alu 1 309 -3 3594 151 62 30 chr1 19855358 19855727 -262337937 - LTR8A LTR ERV1 -312 415 12 278 282 24 12 chr1 19856163 19856248 -262337416 - MIR SINE MIR -116 146 61 3112 172 121 26 chr1 19856305 19856969 -262336695 - LTR8A LTR ERV1 0 727 1 274 135 0 0 chr1 19857021 19857058 -262336606 + LTR29 LTR ERV1 1 37 -585 883 171 0 0 chr1 19857059 19857234 -262336430 - AluSg/x SINE Alu 0 308 134 2011 108 27 7 chr1 19857234 19857529 -262336135 - AluSx SINE Alu -11 301 1 2140 219 95 9 chr1 19857530 19858088 -262335576 + LTR48B LTR ERV1 22 627 -17 3066 146 34 54 chr1 19858093 19858497 -262335167 + LTR48B-int LTR ERV1 1 412 -5534 2800 135 61 122 chr1 19858497 19859172 -262334492 + MER41B LTR ERV1 2 635 0 3066 146 34 54 chr1 19859172 19859739 -262333925 + LTR48B-int LTR ERV1 412 1481 -4465 3579 120 19 53 chr1 19859740 19859825 -262333839 + MER4B LTR ERV1 1 87 -523 2087 129 0 0 chr1 19859825 19860127 -262333537 + AluSx SINE Alu 1 302 -10 3579 120 19 53 chr1 19860127 19860664 -262333000 + MER4B LTR ERV1 87 602 -8 726 68 0 0 chr1 19860707 19860795 -262332869 + LTR48B-int LTR ERV1 842 929 -5402 546 118 0 11 chr1 19860794 19860887 -262332777 + LTR48B-int LTR ERV1 1299 1390 -4941 * 16828 168 86 84 chr1 19861002 19862283 -262331381 + LTR48B-int LTR ERV1 1372 2650 -3681 1650 183 0 10 chr1 19862283 19862573 -262331091 + AluJb SINE Alu 6 292 -20 16828 168 86 84 chr1 19862573 19862714 -262330950 + LTR48B-int LTR ERV1 2650 2789 -3542 185 220 34 51 chr1 19862714 19862773 -262330891 + L3 LINE CR1 1244 1301 -276 16828 168 86 84 chr1 19862773 19863861 -262329803 + LTR48B-int LTR ERV1 2789 3874 -2457 1563 194 3 3 chr1 19863861 19864149 -262329515 - AluJo SINE Alu -24 288 1 16828 168 86 84 chr1 19864149 19864688 -262328976 + LTR48B-int LTR ERV1 3874 4411 -1920 946 48 96 0 chr1 19864688 19864813 -262328851 + MER85 DNA T2_type 1 137 -2 16828 168 86 84 chr1 19864813 19866336 -262327328 + LTR48B-int LTR ERV1 4411 6012 -319 2128 231 89 8 chr1 19866501 19867097 -262326567 + LTR48B LTR ERV1 1 644 0 319 214 0 14 chr1 19867206 19867276 -262326388 - L1MB7 LINE L1 -9 6175 6107 1967 135 0 3 chr1 19867287 19867584 -262326080 - AluSg SINE Alu -6 304 9 1333 132 0 64 chr1 19867593 19867853 -262325811 - AluJb SINE Alu 0 309 65 716 271 47 20 chr1 19868102 19868357 -262325307 - MIR SINE MIR 0 262 1 351 230 86 115 chr1 19868604 19868778 -262324886 - MIR SINE MIR -81 181 13 216 200 0 0 chr1 19869473 19869513 -262324151 - MER5A DNA MER1_type -103 86 47 2572 80 20 6 chr1 19869563 19869913 -262323751 + THE1A LTR MaLR 1 355 0 1992 126 7 10 chr1 19869936 19870237 -262323427 + AluSx SINE Alu 1 300 -12 503 262 9 0 chr1 19870945 19871052 -262322612 - MIR SINE MIR 0 262 155 844 188 6 24 chr1 19871081 19871246 -262322418 + AluJb SINE Alu 138 299 -13 1229 247 48 24 chr1 19871246 19871538 -262322126 + MLT1G LTR MaLR 18 316 -274 748 241 6 6 chr1 19871537 19871699 -262321965 + MLT1G LTR MaLR 429 590 0 * 207 250 0 0 chr1 19871699 19871743 -262321921 - MIR SINE MIR -104 158 115 2021 126 10 0 chr1 19872343 19872637 -262321027 + AluSx SINE Alu 1 297 -15 215 217 116 78 chr1 19872715 19872844 -262320820 + L2 LINE L2 2301 2434 -880 1545 189 3 20 chr1 19873641 19873973 -262319691 - AluJo SINE Alu 0 312 3 264 296 61 8 chr1 19873990 19874122 -262319542 - MIR SINE MIR -5 257 119 2274 93 0 0 chr1 19874277 19874579 -262319085 - AluSg SINE Alu -6 304 3 377 311 34 34 chr1 19874583 19874731 -262318933 + MIR SINE MIR 13 160 -102 232 326 61 34 chr1 19874862 19875009 -262318655 + L1MC4a LINE L1 5447 5595 -526 223 347 0 0 chr1 19875062 19875134 -262318530 + L2 LINE L2 3226 3297 -16 234 0 0 0 chr1 19875136 19875162 -262318502 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 335 343 107 21 chr1 19875169 19875458 -262318206 + L1MC4a LINE L1 5615 5928 -1880 207 188 0 0 chr1 19875458 19875506 -262318158 + (TG)n Simple_repeat Simple_repeat 2 49 0 796 274 34 0 chr1 19876273 19876477 -262317187 - MIR SINE MIR -50 212 2 721 142 122 40 chr1 19876761 19876909 -262316755 + MER74B LTR ERVL 56 215 -407 193 171 98 0 chr1 19876945 19876986 -262316678 + MIR SINE MIR 212 256 -6 1850 190 52 24 chr1 19877060 19877429 -262316235 + MER74A LTR ERVL 171 549 -9 518 221 10 0 chr1 19877612 19877716 -262315948 + MIR SINE MIR 49 153 -109 208 346 37 37 chr1 19877759 19877840 -262315824 - MIR SINE MIR -75 187 107 430 276 151 0 chr1 19877924 19878076 -262315588 - MER96 DNA MER1_type? 0 175 1 396 0 0 0 chr1 19878228 19878272 -262315392 + (TG)n Simple_repeat Simple_repeat 2 45 0 1478 166 0 68 chr1 19878831 19879139 -262314525 + AluJb SINE Alu 1 287 -25 763 298 48 65 chr1 19879260 19879510 -262314154 + L2 LINE L2 2375 2628 -686 3345 178 2 2 chr1 19879510 19880067 -262313597 - MER41D LTR ERV1 0 557 1 763 298 48 65 chr1 19880067 19880181 -262313483 + L2 LINE L2 2628 2742 -572 1817 166 3 0 chr1 19880181 19880483 -262313181 + AluSx SINE Alu 1 303 -9 763 298 48 65 chr1 19880483 19880613 -262313051 + L2 LINE L2 2742 2862 -452 200 317 138 41 chr1 19880752 19880875 -262312789 + L2 LINE L2 3138 3272 0 292 274 114 36 chr1 19880918 19881137 -262312527 - MLT1K LTR MaLR -18 570 335 335 308 15 53 chr1 19881460 19881520 -262312144 - MIR SINE MIR -109 153 92 2211 116 99 42 chr1 19881520 19881925 -262311739 + MSTA LTR MaLR 1 428 0 335 308 15 53 chr1 19881925 19881997 -262311667 - MIR SINE MIR -170 92 26 514 265 129 6 chr1 19882547 19882717 -262310947 + MIR SINE MIR 71 261 -1 468 302 65 52 chr1 19882733 19882965 -262310699 + L2 LINE L2 3000 3234 -38 213 39 0 0 chr1 19883624 19883650 -262310014 + (TG)n Simple_repeat Simple_repeat 1 26 0 683 224 6 0 chr1 19883948 19884122 -262309542 + (CA)n Simple_repeat Simple_repeat 2 176 0 361 322 106 28 chr1 19884585 19884765 -262308899 - MIR SINE MIR -19 243 50 231 246 15 15 chr1 19885074 19885139 -262308525 - L2 LINE L2 -1 3312 3248 321 258 73 73 chr1 19885597 19885721 -262307943 + MIR SINE MIR 22 145 -63 387 312 8 48 chr1 19885776 19885901 -262307763 - L2 LINE L2 0 3313 3194 376 208 0 14 chr1 19885915 19885987 -262307677 - MER117 DNA MER1_type -89 108 38 796 142 55 119 chr1 19886045 19886220 -262307444 - MLT2C1 LTR ERVL -10 387 227 2090 131 3 0 chr1 19886220 19886526 -262307138 - AluSx SINE Alu -5 307 1 796 142 55 119 chr1 19886526 19886569 -262307095 - MLT2C1 LTR ERVL -170 227 183 318 241 111 9 chr1 19886566 19886674 -262306990 - MLT1J2 LTR MaLR -38 412 294 * 1090 115 21 57 chr1 19886762 19886954 -262306710 - MLT2C2 LTR ERVL -279 185 1 7015 57 10 14 chr1 19887248 19888546 -262305118 + L1PA8 LINE L1 4863 6156 -16 756 281 70 62 chr1 19888773 19889161 -262304503 - MLT1I LTR MaLR 0 409 19 230 0 33 0 chr1 19889473 19889503 -262304161 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 292 284 90 47 chr1 19889885 19890100 -262303564 + MIR SINE MIR 4 227 -35 385 317 37 12 chr1 19890720 19890884 -262302780 + MIR SINE MIR 4 171 -91 216 259 17 17 chr1 19891304 19891362 -262302302 + L3 LINE CR1 1517 1574 -3 408 325 72 46 chr1 19891485 19891722 -262301942 + L2 LINE L2 3030 3272 0 590 261 128 15 chr1 19891787 19891990 -262301674 - MIR SINE MIR -6 256 31 1774 150 10 19 chr1 19891997 19892310 -262301354 - AluJo SINE Alu -2 310 1 1174 193 30 47 chr1 19892432 19892837 -262300827 - L1MB7 LINE L1 -9 6175 5764 2215 100 6 3 chr1 19892837 19893148 -262300516 - AluSp SINE Alu -1 312 1 1174 193 30 47 chr1 19893148 19893493 -262300171 - L1MB7 LINE L1 -420 5764 5333 1770 164 3 0 chr1 19893493 19893786 -262299878 - AluJb SINE Alu -18 294 1 1174 193 30 47 chr1 19893786 19893834 -262299830 - L1MB7 LINE L1 -851 5333 5286 233 311 131 16 chr1 19894038 19894160 -262299504 + MIR SINE MIR 108 243 -19 1014 244 45 70 chr1 19894163 19894428 -262299236 - L2 LINE L2 -1 3312 3061 1214 220 128 43 chr1 19894428 19894897 -262298767 - MLT1J LTR MaLR 0 511 3 1014 244 45 70 chr1 19894897 19895074 -262298590 - L2 LINE L2 -252 3061 2881 491 269 88 96 chr1 19895654 19895914 -262297750 + MIR SINE MIR 4 261 -1 302 260 127 13 chr1 19896021 19896190 -262297474 + L2 LINE L2 2798 2977 -336 857 321 53 25 chr1 19896390 19896745 -262296919 + LTR16A LTR ERVL 28 392 -58 277 293 0 66 chr1 19896772 19896878 -262296786 - MIR SINE MIR -133 129 31 300 225 100 12 chr1 19896989 19897069 -262296595 + L2 LINE L2 3134 3220 -52 342 0 0 0 chr1 19897088 19897126 -262296538 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 193 345 115 11 chr1 19897126 19897213 -262296451 + L2 LINE L2 3137 3232 -40 310 343 95 36 chr1 19897316 19897675 -262295989 + L2 LINE L2 2893 3272 0 381 264 171 0 chr1 19897702 19897831 -262295833 - MIR SINE MIR -18 244 94 7084 57 1 2 chr1 19898506 19899474 -262294190 + L1PA6 LINE L1 5201 6167 0 1419 236 53 61 chr1 19899707 19900215 -262293449 - MLT1D LTR MaLR -1 504 1 500 205 293 5 chr1 19900341 19900546 -262293118 + ORSL DNA AcHobo 12 275 0 484 273 23 41 chr1 19900695 19900867 -262292797 - MIR3 SINE MIR -33 175 7 186 43 0 0 chr1 19900879 19900902 -262292762 + (CA)n Simple_repeat Simple_repeat 1 23 0 294 281 68 27 chr1 19900987 19901133 -262292531 - MIR3 SINE MIR -48 160 9 482 173 87 139 chr1 19901504 19901565 -262292099 + MIR SINE MIR 99 162 -100 1483 152 9 111 chr1 19901565 19901881 -262291783 + AluJo SINE Alu 3 286 -16 482 173 87 139 chr1 19901881 19901992 -262291672 + MIR SINE MIR 162 262 0 355 237 79 26 chr1 19902316 19902430 -262291234 - MIR3 SINE MIR -54 154 35 244 61 0 0 chr1 19902668 19902701 -262290963 - L1PA10 LINE L1 -194 5974 5942 1144 76 19 19 chr1 19902701 19902859 -262290805 + L1PA10 LINE L1 6003 6160 -8 216 283 0 0 chr1 19903247 19903300 -262290364 - L2 LINE L2 0 3313 3261 462 234 32 24 chr1 19903537 19903678 -262289986 + MIR SINE MIR 2 144 -64 2036 134 0 0 chr1 19903812 19904102 -262289562 - AluSx SINE Alu -22 290 1 259 313 12 0 chr1 19904137 19904217 -262289447 + MIR3 SINE MIR 119 199 -9 2385 169 21 7 chr1 19904315 19904735 -262288929 - MSTB LTR MaLR 0 426 1 214 293 35 0 chr1 19905558 19905616 -262288048 + MIR SINE MIR 91 150 -112 344 181 0 60 chr1 19905636 19905719 -262287945 - MLT1J2 LTR MaLR 0 450 373 553 251 25 52 chr1 19905752 19905997 -262287667 - MLT1J2 LTR MaLR -172 237 1 227 329 35 0 chr1 19906000 19906085 -262287579 + MIR SINE MIR 172 259 -3 284 215 38 25 chr1 19906719 19906798 -262286866 - MIR SINE MIR -66 196 117 579 273 40 67 chr1 19907617 19907870 -262285794 + MIR SINE MIR 16 261 -1 362 326 121 8 chr1 19907891 19908023 -262285641 - MIR SINE MIR -10 252 106 255 274 16 0 chr1 19908267 19908329 -262285335 - MER5A DNA MER1_type -83 106 44 2097 126 10 0 chr1 19908429 19908723 -262284941 - AluSx SINE Alu -15 297 1 354 269 91 91 chr1 19908781 19908956 -262284708 + MIR SINE MIR 86 260 -2 380 191 0 56 chr1 19909883 19909972 -262283692 + MIR SINE MIR 68 151 -111 2077 104 0 0 chr1 19910616 19910894 -262282770 + AluSx SINE Alu 26 303 -9 417 90 0 0 chr1 19911009 19911076 -262282588 + (TC)n Simple_repeat Simple_repeat 1 67 0 255 264 0 0 chr1 19911146 19911237 -262282427 + (TG)n Simple_repeat Simple_repeat 2 92 0 2995 171 16 35 chr1 19911891 19911904 -262281760 + MER74A LTR ERVL 1 13 -545 1877 159 3 13 chr1 19911904 19912206 -262281458 - AluJo SINE Alu -13 299 1 2995 171 16 35 chr1 19912206 19912761 -262280903 + MER74A LTR ERVL 13 558 0 283 351 67 15 chr1 19913141 19913275 -262280389 + L2 LINE L2 3173 3313 0 280 288 31 69 chr1 19913901 19914061 -262279603 + MIR SINE MIR 95 248 -14 427 294 0 0 chr1 19914196 19914305 -262279359 + MIR SINE MIR 109 217 -45 267 294 20 29 chr1 19914454 19914556 -262279108 + MER5A DNA MER1_type 36 136 -53 2176 130 0 0 chr1 19914560 19914859 -262278805 + AluSx SINE Alu 1 299 -13 1590 102 37 0 chr1 19914861 19915077 -262278587 + AluSg/x SINE Alu 83 306 -4 766 114 0 21 chr1 19915106 19915246 -262278418 + (GGAA)n Simple_repeat Simple_repeat 2 138 0 204 40 0 0 chr1 19915246 19915271 -262278393 + (CAGG)n Simple_repeat Simple_repeat 1 25 0 275 290 40 10 chr1 19915493 19915593 -262278071 + MIR SINE MIR 94 196 -66 304 316 22 22 chr1 19916098 19916237 -262277427 + Charlie8 DNA MER1_type 36 174 -2243 631 289 137 0 chr1 19916472 19916676 -262276988 - MIR SINE MIR -3 259 28 199 274 0 71 chr1 19921108 19921192 -262272472 + MIR SINE MIR 111 188 -74 258 300 23 39 chr1 19922036 19922166 -262271498 - MER117 DNA MER1_type -38 159 32 689 262 129 52 chr1 19922554 19922840 -262270824 - L2 LINE L2 0 3313 3006 348 266 55 18 chr1 19973360 19973469 -262220195 + MIR SINE MIR 91 203 -59 2832 90 3 0 chr1 19973630 19973984 -262219680 - THE1A LTR MaLR 0 355 1 832 249 119 57 chr1 19974130 19974608 -262219056 - MER34 LTR ERV1 -4 538 26 1799 134 49 14 chr1 19974608 19974892 -262218772 - AluJo SINE Alu -18 294 1 832 249 119 57 chr1 19974892 19974919 -262218745 - MER34 LTR ERV1 -516 26 2 280 227 47 47 chr1 19975227 19975355 -262218309 - LTR16C LTR ERVL -1 490 363 * 3908 174 96 1 chr1 19975318 19976066 -262217598 + LTR1B LTR ERV1 8 826 0 689 225 86 44 chr1 19976066 19976347 -262217317 - LTR16C LTR ERVL -74 417 98 248 232 0 0 chr1 19976525 19976581 -262217083 - L1MC4 LINE L1 0 8042 7987 3821 209 66 15 chr1 19976583 19977497 -262216167 - L1MC4 LINE L1 -142 7900 6941 271 250 0 0 chr1 19977542 19977556 -262216108 - LTR16A1 LTR ERVL -135 322 309 2369 83 0 3 chr1 19977556 19977856 -262215808 + AluY SINE Alu 1 299 -12 271 250 0 0 chr1 19977856 19977901 -262215763 - LTR16A1 LTR ERVL -147 310 263 1075 229 19 0 chr1 19978105 19978319 -262215345 - MER58A DNA MER1_type -6 218 1 1032 199 4 61 chr1 19978625 19978784 -262214880 + L1MB7 LINE L1 4935 5102 -1044 2268 64 0 3 chr1 19978784 19979229 -262214435 + AluY SINE Alu 1 444 0 1032 199 4 61 chr1 19979229 19979327 -262214337 + L1MB7 LINE L1 5102 5179 -967 2158 172 42 8 chr1 19979327 19979711 -262213953 + MLT2C1 LTR ERVL 1 397 0 1032 199 4 61 chr1 19979711 19979728 -262213936 + L1MB7 LINE L1 5179 5195 -951 2048 132 6 13 chr1 19979729 19980040 -262213624 + AluSc SINE Alu 1 309 0 410 125 0 14 chr1 19980057 19980129 -262213535 + (GGGA)n Simple_repeat Simple_repeat 3 73 0 4599 164 65 13 chr1 19980129 19981058 -262212606 + L1MB7 LINE L1 5176 6155 -29 2109 157 29 35 chr1 19981058 19981435 -262212229 - THE1C LTR MaLR 0 375 1 4599 164 65 13 chr1 19981435 19981467 -262212197 + L1MB7 LINE L1 6155 6184 0 873 247 160 34 chr1 19981540 19981896 -262211768 + MLT1J LTR MaLR 53 453 -58 679 226 89 104 chr1 19981921 19982158 -262211506 - MLT1G3 LTR MaLR -70 525 210 1439 161 24 134 chr1 19982158 19982493 -262211171 - AluJb SINE Alu -1 301 4 679 226 89 104 chr1 19982493 19982625 -262211039 - MLT1G3 LTR MaLR -385 210 78 315 194 0 0 chr1 19982625 19982697 -262210967 - L1MEc LINE L1 -3515 2700 2629 1468 218 49 137 chr1 19982708 19983279 -262210385 - MLT1D LTR MaLR -2 503 1 1077 226 84 10 chr1 19983279 19983576 -262210088 - L1MEc LINE L1 -3591 2624 2306 796 112 7 132 chr1 19983578 19983730 -262209934 + AluJo SINE Alu 2 134 -178 4082 147 63 6 chr1 19983739 19984418 -262209246 + L1PA16 LINE L1 5433 6150 -16 2485 260 53 31 chr1 19984418 19985431 -262208233 - L1MEc LINE L1 -4044 2352 1317 1842 145 7 3 chr1 19985431 19985714 -262207950 + AluJb SINE Alu 11 294 -18 389 290 126 33 chr1 19985759 19985942 -262207722 + MIR SINE MIR 57 256 -6 216 0 0 0 chr1 19986639 19986663 -262207001 + (A)n Simple_repeat Simple_repeat 1 24 0 2249 39 0 0 chr1 19986721 19987021 -262206643 - AluY SINE Alu 0 328 29 474 39 39 0 chr1 19987583 19987660 -262206004 + (TG)n Simple_repeat Simple_repeat 2 81 0 339 224 31 20 chr1 19988602 19988700 -262204964 + MIR SINE MIR 81 179 -83 206 239 14 0 chr1 19988748 19988819 -262204845 + (ATG)n Simple_repeat Simple_repeat 1 72 0 482 343 5 25 chr1 19988990 19989191 -262204473 - MIR SINE MIR -46 216 20 1850 132 10 51 chr1 19989604 19989899 -262203765 + AluSc SINE Alu 1 283 -26 285 230 59 20 chr1 19990245 19990451 -262203213 - MLT1G LTR MaLR -249 300 22 4243 234 94 39 chr1 19991167 19992468 -262201196 + L1MB7 LINE L1 307 1536 -5289 2180 128 0 3 chr1 19992468 19992772 -262200892 + AluSc SINE Alu 1 303 -6 4243 234 94 39 chr1 19992772 19993310 -262200354 + L1MB7 LINE L1 1536 2043 -4782 487 145 0 0 chr1 19993310 19993386 -262200278 + MADE1 DNA Mariner 4 79 -1 4243 234 94 39 chr1 19993386 19993418 -262200246 + L1MB7 LINE L1 2043 2072 -4753 7212 132 54 20 chr1 19993418 19994609 -262199055 - Tigger3b DNA MER2_type 0 1231 1 4243 234 94 39 chr1 19994609 19994980 -262198684 + L1MB7 LINE L1 2072 2802 -4023 * 4769 169 56 15 chr1 19994977 19996726 -262196938 + L1MB7 LINE L1 4857 6682 0 1846 296 91 43 chr1 19996730 19996879 -262196785 + L1ME3A LINE L1 3961 4101 -2069 779 31 0 31 chr1 19996879 19996976 -262196688 - L1PA8 LINE L1 -1 6171 6078 1846 296 91 43 chr1 19996976 19997773 -262195891 + L1ME3A LINE L1 4101 4858 -1312 4143 90 19 5 chr1 19997773 19998337 -262195327 - L1PB2 LINE L1 0 6151 5580 1846 296 91 43 chr1 19998337 19998677 -262194987 + L1ME3A LINE L1 4858 5180 -990 2091 134 13 0 chr1 19998677 19998984 -262194680 + AluSx SINE Alu 1 311 -1 1846 296 91 43 chr1 19998984 19999569 -262194095 + L1ME3A LINE L1 5180 5947 -223 426 195 0 0 chr1 19999811 19999898 -262193766 + CT-rich Low_complexity Low_complexity 1 87 0 399 277 132 60 chr1 20000032 20000267 -262193397 - L2 LINE L2 -217 3055 2804 585 174 35 9 chr1 20000867 20000982 -262192682 + ORSL DNA AcHobo 1 118 -157 864 131 69 14 chr1 20001107 20001252 -262192412 + ORSL DNA AcHobo 119 271 -4 429 20 0 0 chr1 20001953 20002003 -262191661 + (CA)n Simple_repeat Simple_repeat 2 51 0 1061 178 27 5 chr1 20002281 20002466 -262191198 - MER5A DNA MER1_type 0 189 1 889 113 21 103 chr1 20002563 20002757 -262190907 - L1PA6 LINE L1 0 6154 5977 260 304 43 29 chr1 20003015 20003153 -262190511 - MIR SINE MIR -117 145 6 334 261 162 81 chr1 20003160 20003531 -262190133 - MLT1L LTR MaLR 0 615 215 196 261 0 108 chr1 20003750 20003815 -262189849 - L2 LINE L2 -7 3265 3208 503 267 59 7 chr1 20003817 20003952 -262189712 + MIR SINE MIR 2 143 -119 21 0 0 0 chr1 20004261 20004282 -262189382 + GC_rich Low_complexity Low_complexity 1 21 0 1736 173 3 7 chr1 20004361 20004656 -262189008 + AluJb SINE Alu 1 294 -18 291 209 35 35 chr1 20004657 20004743 -262188921 - MIR SINE MIR -93 169 84 612 236 116 33 chr1 20005387 20005482 -262188182 - MIR SINE MIR 0 262 176 2155 157 36 33 chr1 20005482 20005845 -262187819 + THE1B LTR MaLR 1 364 0 612 236 116 33 chr1 20005845 20005990 -262187674 - MIR SINE MIR -86 176 2 282 264 81 0 chr1 20007069 20007156 -262186508 - MIR SINE MIR -8 254 161 * 638 352 97 26 chr1 20007155 20007797 -262185867 + L2 LINE L2 2239 2925 -389 2071 214 30 28 chr1 20008058 20008558 -262185106 + MLT1D LTR MaLR 1 501 -4 336 206 0 0 chr1 20008566 20008629 -262185035 - MIR SINE MIR -124 138 76 393 314 118 10 chr1 20009162 20009366 -262184298 - MIR SINE MIR -17 245 20 307 210 3 38 chr1 20009937 20010022 -262183642 + MLT1F LTR MaLR 472 542 0 2466 65 0 0 chr1 20010328 20010634 -262183030 + AluY SINE Alu 1 306 -5 629 315 110 27 chr1 20010965 20011374 -262182290 + MLT1J LTR MaLR 8 450 -61 415 305 80 33 chr1 20011858 20012071 -262181593 + MIR SINE MIR 28 250 -12 213 273 45 80 chr1 20012320 20012408 -262181256 + L2 LINE L2 3182 3266 -6 374 320 74 11 chr1 20012700 20012875 -262180789 + MIR3 SINE MIR 20 205 -3 263 298 126 7 chr1 20013144 20013295 -262180369 - L2 LINE L2 -3 3269 3101 305 176 0 0 chr1 20013380 20013431 -262180233 - MER81 DNA DNA -62 52 2 273 180 0 49 chr1 20014559 20014620 -262179044 - L2 LINE L2 -2 3311 3254 211 211 0 19 chr1 20014720 20014772 -262178892 + CT-rich Low_complexity Low_complexity 2 52 0 792 333 20 4 chr1 20014782 20015034 -262178630 - MIR SINE MIR -5 257 2 466 326 27 11 chr1 20015188 20015372 -262178292 + MIR SINE MIR 47 233 -29 795 231 74 0 chr1 20015407 20015610 -262178054 + LTR16A1 LTR ERVL 207 424 -33 1955 130 0 0 chr1 20015743 20016020 -262177644 + AluSq SINE Alu 1 277 -36 756 61 0 0 chr1 20016021 20016119 -262177545 + (GAAA)n Simple_repeat Simple_repeat 2 99 0 1224 59 0 32 chr1 20016119 20016305 -262177359 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 255 224 17 0 chr1 20016829 20016887 -262176777 - L2 LINE L2 0 3313 3255 492 291 63 26 chr1 20016957 20017182 -262176482 + MIR SINE MIR 22 259 -3 193 348 95 40 chr1 20017262 20017558 -262176106 + L2 LINE L2 2553 2864 -450 1049 244 62 12 chr1 20017734 20018054 -262175610 - MLT1C LTR MaLR -128 339 4 406 259 82 10 chr1 20018060 20018204 -262175460 - MIR SINE MIR -58 150 6 495 323 69 11 chr1 20018248 20018437 -262175227 - MIR SINE MIR -53 209 10 222 200 0 0 chr1 20018624 20018669 -262174995 + (CA)n Simple_repeat Simple_repeat 1 45 0 232 281 0 0 chr1 20019286 20019343 -262174321 + MIR SINE MIR 87 143 -65 226 320 130 0 chr1 20019362 20019462 -262174202 + MIR SINE MIR 2 114 -148 1933 202 47 55 chr1 20019488 20019997 -262173667 + MLT1D LTR MaLR 1 505 0 1314 168 86 57 chr1 20020201 20020481 -262173183 - AluJo SINE Alu -24 288 1 540 223 85 8 chr1 20020495 20020625 -262173039 + L2 LINE L2 3168 3307 -6 217 139 0 0 chr1 20020721 20020757 -262172907 + MIR SINE MIR 109 144 -64 752 235 92 41 chr1 20021314 20021510 -262172154 - MER63A DNA MER1_type -4 206 1 242 361 92 0 chr1 20022145 20022275 -262171389 - MIR SINE MIR -102 160 19 827 117 0 8 chr1 20022797 20022917 -262170747 + AluSg/x SINE Alu 186 304 -6 219 139 0 0 chr1 20023209 20023245 -262170419 + (CCCA)n Simple_repeat Simple_repeat 1 36 0 522 294 31 6 chr1 20023262 20023425 -262170239 + L2 LINE L2 2918 3084 -229 408 338 108 7 chr1 20023619 20023924 -262169740 - L2 LINE L2 -18 3254 2919 183 301 188 25 chr1 20023944 20024306 -262169358 - L2 LINE L2 -568 2746 2326 225 196 29 69 chr1 20024391 20024493 -262169171 + (CAGGG)n Simple_repeat Simple_repeat 3 100 0 266 263 32 63 chr1 20024544 20024639 -262169025 - MIR3 SINE MIR -24 184 93 322 270 87 16 chr1 20024860 20024986 -262168678 - MLT1I LTR MaLR -266 143 9 328 335 95 6 chr1 20025008 20025187 -262168477 - MIR SINE MIR -21 241 47 326 188 113 0 chr1 20025758 20025838 -262167826 + L2 LINE L2 3225 3313 0 615 286 12 7 chr1 20026621 20026813 -262166851 - MIR SINE MIR -65 143 3 353 325 204 5 chr1 20026965 20027156 -262166508 - MIR SINE MIR -11 251 23 2002 141 20 0 chr1 20027636 20028001 -262165663 + AluSx SINE Alu 1 371 0 265 189 156 0 chr1 20028084 20028174 -262165490 - MIR SINE MIR -49 159 42 523 298 259 18 chr1 20028521 20029837 -262163827 + L2 LINE L2 1329 2962 -352 246 359 28 69 chr1 20029968 20030113 -262163551 + L2 LINE L2 3134 3272 0 318 311 10 0 chr1 20030184 20030287 -262163377 - MIR SINE MIR -112 150 47 455 245 19 0 chr1 20030623 20030729 -262162935 - MIR SINE MIR -71 137 30 194 167 0 48 chr1 20030957 20030999 -262162665 + L2 LINE L2 3153 3192 -80 283 374 25 10 chr1 20031116 20031314 -262162350 + L1MC5 LINE L1 7727 7927 -34 250 329 24 0 chr1 20031389 20031474 -262162190 - MIR SINE MIR -12 250 164 313 332 80 30 chr1 20031599 20031798 -262161866 - MARNA DNA Mariner -133 453 245 639 290 54 84 chr1 20032140 20032582 -262161082 + L2 LINE L2 2824 3252 -20 327 243 43 0 chr1 20032609 20032679 -262160985 + MIR SINE MIR 102 174 -88 751 278 50 73 chr1 20032679 20032835 -262160829 - L2 LINE L2 -1 3312 3154 3018 116 118 27 chr1 20032835 20033318 -262160346 - MER1A DNA MER1_type 0 527 1 751 278 50 73 chr1 20033318 20033406 -262160258 - L2 LINE L2 -159 3154 3066 2240 92 3 0 chr1 20033406 20033700 -262159964 - AluSp SINE Alu -18 295 1 751 278 50 73 chr1 20033700 20033890 -262159774 - L2 LINE L2 -247 3066 2887 236 250 0 17 chr1 20034670 20034730 -262158934 + GA-rich Low_complexity Low_complexity 1 59 0 26 0 0 0 chr1 20034886 20034912 -262158752 + GC_rich Low_complexity Low_complexity 1 26 0 979 319 72 12 chr1 20035311 20035588 -262158076 - L2 LINE L2 0 3313 3001 1615 106 18 0 chr1 20035588 20035814 -262157850 - AluSp SINE Alu -19 294 65 979 319 72 12 chr1 20035814 20035953 -262157711 - L2 LINE L2 -312 3001 2872 428 309 22 0 chr1 20036429 20036565 -262157099 - MIR SINE MIR -34 228 90 1988 104 3 31 chr1 20036565 20036854 -262156810 + AluSq SINE Alu 1 281 -32 647 241 30 12 chr1 20037449 20037615 -262156049 - MER63A DNA MER1_type 0 210 42 195 114 0 0 chr1 20037768 20037803 -262155861 + (TA)n Simple_repeat Simple_repeat 2 36 0 244 259 0 25 chr1 20037810 20037891 -262155773 + MER116 DNA Mariner 1 79 -1 342 308 7 86 chr1 20037935 20038122 -262155542 + MIR3 SINE MIR 21 192 -32 220 240 124 33 chr1 20038538 20038659 -262155005 + MIR SINE MIR 23 154 -108 1608 177 3 20 chr1 20038659 20038953 -262154711 - AluJo SINE Alu -23 289 1 697 219 33 0 chr1 20039128 20039279 -262154385 + MIR SINE MIR 51 206 -56 1671 137 7 75 chr1 20039292 20039621 -262154043 + AluSx SINE Alu 1 308 0 946 226 24 32 chr1 20039629 20039877 -262153787 - MIR SINE MIR -12 250 5 2104 134 0 0 chr1 20040368 20040673 -262152991 + AluSx SINE Alu 1 305 -7 334 275 207 42 chr1 20040690 20040883 -262152781 + MIR SINE MIR 36 260 -2 239 298 106 10 chr1 20041652 20041756 -262151908 + MIR3 SINE MIR 9 122 -86 330 294 11 0 chr1 20041775 20041886 -262151778 + L2 LINE L2 3153 3308 -5 650 290 73 30 chr1 20042168 20042468 -262151196 - MER102b DNA MER1_type -3 338 26 223 400 27 0 chr1 20042897 20043047 -262150617 - MIR3 SINE MIR -9 199 46 237 293 198 0 chr1 20043470 20043576 -262150088 - MIR SINE MIR -79 183 57 699 293 43 12 chr1 20043930 20044183 -262149481 - L1ME3 LINE L1 0 6162 5902 1770 264 94 4 chr1 20044187 20044707 -262148957 + MLT1G1 LTR MaLR 1 567 -28 780 154 12 6 chr1 20044799 20044961 -262148703 + GA-rich Low_complexity Low_complexity 3 165 0 508 217 179 43 chr1 20044990 20045034 -262148630 - MLT1K LTR MaLR -66 522 485 2132 166 121 16 chr1 20045034 20045457 -262148207 - MLT1C LTR MaLR 0 467 1 508 217 179 43 chr1 20045457 20045596 -262148068 - MLT1K LTR MaLR -103 485 314 463 306 53 29 chr1 20046205 20046414 -262147250 - L2 LINE L2 -2 3311 3098 1917 144 17 3 chr1 20046732 20047030 -262146634 + AluJb SINE Alu 1 302 -10 389 234 0 54 chr1 20047067 20047178 -262146486 + L1ME3A LINE L1 6060 6164 -6 703 137 0 24 chr1 20047201 20047325 -262146339 + L1MA5A LINE L1 6177 6297 0 637 175 10 0 chr1 20047629 20047732 -262145932 + FLAM_A SINE Alu 4 107 -35 356 287 42 21 chr1 20048520 20048663 -262145001 + L2 LINE L2 3162 3307 -6 488 291 30 0 chr1 20049210 20049344 -262144320 - MIR SINE MIR -54 208 71 182 237 17 0 chr1 20049646 20049705 -262143959 + L2 LINE L2 2551 2610 -704 595 302 150 18 chr1 20049709 20050090 -262143574 + L2 LINE L2 2842 3272 0 531 291 51 7 chr1 20050508 20050708 -262142956 + MIR SINE MIR 31 241 -21 180 0 0 0 chr1 20050954 20050974 -262142690 + (A)n Simple_repeat Simple_repeat 1 20 0 1793 165 0 7 chr1 20050978 20051275 -262142389 + AluJo SINE Alu 1 295 -17 286 252 126 39 chr1 20051675 20051802 -262141862 - MIR3 SINE MIR -37 171 34 423 223 22 86 chr1 20052295 20052434 -262141230 + MLT1H LTR MaLR 81 210 -339 1822 153 3 20 chr1 20052443 20052744 -262140920 + AluJb SINE Alu 3 298 -14 294 241 0 0 chr1 20052791 20052878 -262140786 + (CACCAT)n Simple_repeat Simple_repeat 4 90 0 209 404 20 10 chr1 20053346 20053445 -262140219 + MIR SINE MIR 22 121 -141 1372 147 34 0 chr1 20053867 20054105 -262139559 + AluSx SINE Alu 58 303 -9 976 232 160 71 chr1 20054193 20054724 -262138940 - L2 LINE L2 -10 3303 2820 1661 159 24 14 chr1 20054724 20055013 -262138651 + AluJo SINE Alu 6 297 -15 2258 69 14 3 chr1 20055015 20055305 -262138359 + AluY SINE Alu 3 295 -16 976 232 160 71 chr1 20055305 20055477 -262138187 - L2 LINE L2 -493 2820 2665 2908 86 5 0 chr1 20055477 20055850 -262137814 - THE1C LTR MaLR 0 375 1 976 232 160 71 chr1 20055850 20055885 -262137779 - L2 LINE L2 -648 2665 2490 2167 147 0 0 chr1 20055935 20056270 -262137394 - AluJb SINE Alu 0 335 1 337 350 102 0 chr1 20056847 20057004 -262136660 - MIR SINE MIR -74 188 16 612 290 70 0 chr1 20057273 20057459 -262136205 - MIR SINE MIR -15 247 49 254 172 16 139 chr1 20057898 20057963 -262135701 + MER113 DNA MER1_type? 12 58 -463 2068 123 3 3 chr1 20057963 20058290 -262135374 - AluSx SINE Alu 0 327 1 254 172 16 139 chr1 20058290 20058345 -262135319 + MER113 DNA MER1_type? 58 118 -403 554 304 11 11 chr1 20058718 20058902 -262134762 - L2 LINE L2 -176 3096 2913 303 264 153 35 chr1 20059090 20059234 -262134430 - MIR SINE MIR -47 161 1 492 289 16 8 chr1 20059255 20059383 -262134281 + MIR3 SINE MIR 27 155 -53 513 248 45 46 chr1 20059410 20059582 -262134082 - MIR SINE MIR -62 146 18 969 182 12 24 chr1 20060649 20060854 -262132810 - MIR SINE MIR -14 248 46 336 348 43 14 chr1 20060826 20060967 -262132697 - MIR3 SINE MIR -17 191 47 * 2829 214 89 48 chr1 20061187 20061386 -262132278 + L1ME1 LINE L1 5318 5507 -659 2468 91 7 0 chr1 20061386 20061695 -262131969 + AluSx SINE Alu 1 311 -1 2829 214 89 48 chr1 20061695 20062243 -262131421 + L1ME1 LINE L1 5507 6103 -63 2286 131 0 3 chr1 20062243 20062556 -262131108 + AluSx SINE Alu 1 312 0 2829 214 89 48 chr1 20062556 20062618 -262131046 + L1ME1 LINE L1 6103 6161 -5 195 259 86 0 chr1 20062816 20062874 -262130790 - MIR3 SINE MIR -30 178 116 410 296 16 8 chr1 20063077 20063202 -262130462 + MIR SINE MIR 29 154 -108 465 327 16 28 chr1 20063218 20063469 -262130195 - MLT1L LTR MaLR -8 607 360 320 338 108 10 chr1 20063971 20064175 -262129489 - L1MC4a LINE L1 -1690 6118 5895 1172 301 63 12 chr1 20064180 20064688 -262128976 - L1MC4a LINE L1 -1979 5829 5296 2221 88 7 33 chr1 20064800 20065147 -262128517 - AluSx SINE Alu 0 312 1 1161 182 53 0 chr1 20065171 20065290 -262128374 + AluJo SINE Alu 1 137 -175 192 77 0 0 chr1 20065290 20065316 -262128348 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1161 182 53 0 chr1 20065316 20065405 -262128259 + AluJo SINE Alu 137 220 -92 430 336 91 5 chr1 20065454 20065829 -262127835 - L1MC4a LINE L1 -999 5147 4741 663 261 53 13 chr1 20066106 20066304 -262127360 - L1ME3A LINE L1 -11 6159 5949 393 45 0 286 chr1 20066304 20066416 -262127248 + MADE1 DNA Mariner 1 80 0 663 261 53 13 chr1 20066416 20066443 -262127221 - L1ME3A LINE L1 -221 5949 5925 * 6230 33 1 10 chr1 20066442 20067223 -262126441 - L1PA5 LINE L1 0 6154 5381 1385 93 0 271 chr1 20067300 20067558 -262126106 - AluJb SINE Alu -12 300 186 2243 87 28 3 chr1 20067558 20067847 -262125817 - AluY SINE Alu -15 296 1 1385 93 0 271 chr1 20067847 20067987 -262125677 - AluJb SINE Alu -126 186 10 670 264 24 0 chr1 20067999 20068166 -262125498 - L1ME3A LINE L1 -265 5905 5735 1800 178 0 7 chr1 20068219 20068512 -262125152 + AluJo SINE Alu 1 291 -21 530 286 19 0 chr1 20068543 20068697 -262124967 - L1ME3A LINE L1 -462 5700 5544 436 322 50 52 chr1 20068698 20069130 -262124534 + MLT1J1 LTR MaLR 16 450 0 259 295 93 20 chr1 20069314 20069616 -262124048 - L1M4 LINE L1 -3676 2470 2147 266 56 0 0 chr1 20069962 20069998 -262123666 + tRNA-Gln-CAG tRNA tRNA 3 38 -37 225 341 9 24 chr1 20070007 20070218 -262123446 - HAL1b LINE L1 -457 891 684 395 311 15 29 chr1 20070229 20070435 -262123229 - HAL1b LINE L1 -716 632 430 2194 83 0 4 chr1 20071101 20071377 -262122287 + AluY SINE Alu 36 310 -1 510 118 35 0 chr1 20071423 20071508 -262122156 - MER2 DNA MER2_type -139 206 119 696 167 0 0 chr1 20071510 20071618 -262122046 + AluSx SINE Alu 2 109 -204 1255 150 0 34 chr1 20071831 20072038 -262121626 + AluSx SINE Alu 108 307 -5 489 179 0 0 chr1 20072038 20072122 -262121542 - MER2 DNA MER2_type -213 132 49 355 347 114 0 chr1 20072153 20072346 -262121318 - L2 LINE L2 -178 3135 2921 2254 122 3 3 chr1 20072401 20072713 -262120951 + AluSx SINE Alu 1 312 0 1222 122 6 22 chr1 20072737 20072918 -262120746 + AluJb SINE Alu 118 295 -17 2065 138 6 31 chr1 20072918 20073268 -262120396 + AluSx SINE Alu 1 312 0 554 196 65 7 chr1 20073311 20073449 -262120215 - L2 LINE L2 -533 2781 2636 187 239 55 92 chr1 20073976 20074085 -262119579 - MIR SINE MIR -49 213 109 1724 166 40 3 chr1 20074797 20075093 -262118571 - AluJo SINE Alu -5 307 1 350 292 62 15 chr1 20075121 20075251 -262118413 + L2 LINE L2 3134 3269 -3 327 154 11 33 chr1 20075670 20075761 -262117903 + GA-rich Low_complexity Low_complexity 3 91 0 198 0 0 0 chr1 20075762 20075784 -262117880 + (A)n Simple_repeat Simple_repeat 1 22 0 190 282 0 28 chr1 20076057 20076128 -262117536 - MIR SINE MIR -82 126 58 21 0 0 0 chr1 20076324 20076345 -262117319 + AT_rich Low_complexity Low_complexity 1 21 0 443 309 40 7 chr1 20076419 20076571 -262117093 + MIR3 SINE MIR 29 185 -23 2398 86 3 0 chr1 20076739 20077041 -262116623 + AluSq SINE Alu 1 303 -10 322 333 25 0 chr1 20077069 20077189 -262116475 - MIR SINE MIR -74 188 66 380 116 128 0 chr1 20077487 20077573 -262116091 - MER53 DNA DNA -86 103 7 364 214 0 0 chr1 20077867 20077937 -262115727 + MIR SINE MIR 78 147 -61 400 306 22 0 chr1 20078347 20078481 -262115183 + L2 LINE L2 3136 3272 0 511 260 117 0 chr1 20078483 20078637 -262115027 - MIR SINE MIR -87 175 4 1105 113 11 8 chr1 20078651 20079003 -262114661 + (TGAA)n Simple_repeat Simple_repeat 3 354 0 342 299 88 7 chr1 20079281 20079428 -262114236 + MIR SINE MIR 40 198 -64 183 320 50 10 chr1 20079833 20079933 -262113731 + MIR SINE MIR 30 133 -75 469 253 70 38 chr1 20080184 20080342 -262113322 - MIR SINE MIR -68 194 32 320 227 53 0 chr1 20080548 20080623 -262113041 - MIR SINE MIR -115 147 69 1796 156 58 14 chr1 20080655 20080950 -262112714 - AluJb SINE Alu -4 308 1 287 280 27 0 chr1 20081404 20081479 -262112185 + L2 LINE L2 3234 3310 -3 266 301 12 12 chr1 20083628 20083711 -262109953 + MIR3 SINE MIR 107 189 -19 373 245 9 19 chr1 20083724 20083830 -262109834 - MIR SINE MIR -49 213 109 320 222 101 0 chr1 20084303 20084402 -262109262 - MER20 DNA MER1_type -82 137 29 404 306 82 0 chr1 20084456 20084590 -262109074 + MIR SINE MIR 12 156 -106 954 209 9 41 chr1 20084933 20085153 -262108511 + MER20 DNA MER1_type 6 218 -1 254 287 57 41 chr1 20085611 20085733 -262107931 - MIR SINE MIR -16 246 123 1409 219 52 21 chr1 20085936 20086062 -262107602 + L1MB5 LINE L1 5780 5901 -273 2273 118 0 0 chr1 20086062 20086358 -262107306 + AluSx SINE Alu 1 296 -16 1409 219 52 21 chr1 20086358 20086614 -262107050 + L1MB5 LINE L1 5901 6174 0 227 185 0 37 chr1 20086618 20086646 -262107018 + A-rich Low_complexity Low_complexity 1 28 -24 1593 134 0 119 chr1 20086646 20086778 -262106886 + AluJo SINE Alu 1 147 -155 1834 150 55 4 chr1 20086778 20087051 -262106613 + AluSx SINE Alu 1 287 -25 1593 134 0 119 chr1 20087051 20087261 -262106403 + AluJo SINE Alu 147 302 0 227 185 0 37 chr1 20087261 20087286 -262106378 + A-rich Low_complexity Low_complexity 28 52 0 1001 131 0 6 chr1 20087395 20087563 -262106101 + (GGAA)n Simple_repeat Simple_repeat 2 168 0 305 303 45 65 chr1 20088042 20088197 -262105467 + L1ME4a LINE L1 5759 5910 -211 1982 128 57 0 chr1 20088773 20089055 -262104609 + AluSx SINE Alu 1 298 -14 2174 115 0 11 chr1 20089057 20089364 -262104300 + AluSq SINE Alu 1 304 0 420 248 26 0 chr1 20089511 20089628 -262104036 - MIR SINE MIR -123 139 20 1920 114 85 0 chr1 20089764 20090067 -262103597 + AluSg SINE Alu 3 310 0 622 274 34 6 chr1 20090076 20090255 -262103409 - MIR SINE MIR -32 230 47 1873 156 30 7 chr1 20091110 20091405 -262102259 + AluJb SINE Alu 1 302 -10 451 274 48 20 chr1 20091648 20091794 -262101870 - MIR3 SINE MIR -29 179 30 942 133 5 109 chr1 20092177 20092239 -262101425 - MER5A DNA MER1_type -1 188 121 2049 151 0 0 chr1 20092239 20092538 -262101126 + AluJb SINE Alu 1 299 -13 942 133 5 109 chr1 20092538 20092685 -262100979 - MER5A DNA MER1_type -68 121 1 218 290 14 0 chr1 20092843 20092912 -262100752 + L2 LINE L2 3232 3301 -12 257 338 35 0 chr1 20093164 20093306 -262100358 - L1ME4a LINE L1 -31 6090 5944 2443 62 13 16 chr1 20093443 20093750 -262099914 + AluSp SINE Alu 1 306 -7 2020 148 0 7 chr1 20093759 20094069 -262099595 + AluJb SINE Alu 1 308 -4 2373 77 0 10 chr1 20094078 20094377 -262099287 + AluY SINE Alu 1 296 -15 816 269 8 26 chr1 20094387 20094621 -262099043 + MIR SINE MIR 29 258 -4 699 286 115 34 chr1 20094677 20095174 -262098490 - L1ME4a LINE L1 -318 5803 5267 471 325 102 15 chr1 20095727 20095954 -262097710 - MIR SINE MIR -15 247 1 239 298 91 16 chr1 20095954 20096059 -262097605 + MIR SINE MIR 52 165 -97 2122 132 10 0 chr1 20096449 20096745 -262096919 - AluSx SINE Alu -13 299 1 2123 153 0 0 chr1 20096949 20097257 -262096407 + AluSx SINE Alu 1 308 -4 1746 167 17 3 chr1 20097518 20097805 -262095859 + AluJb SINE Alu 1 291 -21 1702 196 81 37 chr1 20097818 20098302 -262095362 - MLT1D LTR MaLR 0 505 1 28 48 0 0 chr1 20098429 20098471 -262095193 + AT_rich Low_complexity Low_complexity 1 42 0 535 328 23 0 chr1 20098474 20098645 -262095019 + MIR SINE MIR 67 241 -21 1855 133 0 81 chr1 20098660 20098890 -262094774 - AluSq SINE Alu -17 296 98 2377 100 3 0 chr1 20098890 20099191 -262094473 - AluSx SINE Alu -10 302 1 1855 133 0 81 chr1 20099191 20099282 -262094382 - AluSq SINE Alu -215 98 1 219 36 0 0 chr1 20099374 20099402 -262094262 + (CA)n Simple_repeat Simple_repeat 1 28 0 263 289 33 11 chr1 20100140 20100230 -262093434 - L2 LINE L2 0 3272 3181 1123 158 0 0 chr1 20100306 20100483 -262093181 + AluSp SINE Alu 137 313 0 344 306 122 0 chr1 20100502 20100682 -262092982 + MIR SINE MIR 57 258 -4 267 230 200 20 chr1 20101111 20101211 -262092453 - L2 LINE L2 0 3313 3196 298 185 22 51 chr1 20102333 20102511 -262091153 + GA-rich Low_complexity Low_complexity 2 174 0 2186 123 0 3 chr1 20102541 20102842 -262090822 + AluSx SINE Alu 12 311 -1 356 274 11 11 chr1 20102850 20103029 -262090635 + GA-rich Low_complexity Low_complexity 2 180 0 209 183 17 0 chr1 20104364 20104424 -262089240 + GA-rich Low_complexity Low_complexity 1 61 0 252 266 32 11 chr1 20105357 20105451 -262088213 + (TA)n Simple_repeat Simple_repeat 2 97 0 279 0 0 0 chr1 20107014 20107045 -262086619 + (TCC)n Simple_repeat Simple_repeat 2 32 0 497 124 10 0 chr1 20111690 20111787 -262081877 + (GGAA)n Simple_repeat Simple_repeat 3 100 0 276 30 0 0 chr1 20112015 20112048 -262081616 + (TG)n Simple_repeat Simple_repeat 2 34 0 214 293 0 0 chr1 20112488 20112546 -262081118 + GA-rich Low_complexity Low_complexity 2 59 0 200 196 65 0 chr1 20112958 20113004 -262080660 + G-rich Low_complexity Low_complexity 2 50 0 213 225 0 0 chr1 20114446 20114486 -262079178 + GA-rich Low_complexity Low_complexity 2 41 0 230 190 35 52 chr1 20116683 20116741 -262076923 + G-rich Low_complexity Low_complexity 3 59 0 22 35 0 0 chr1 20117036 20117065 -262076599 + GC_rich Low_complexity Low_complexity 1 29 0 34 24 0 0 chr1 20118339 20118380 -262075284 + AT_rich Low_complexity Low_complexity 1 41 0 266 260 10 20 chr1 20119123 20119223 -262074441 + G-rich Low_complexity Low_complexity 1 99 0 283 310 35 53 chr1 20120512 20120625 -262073039 + MIR3 SINE MIR 52 162 -46 475 252 150 7 chr1 20121099 20121246 -262072418 - L2 LINE L2 -1 3312 3145 229 237 17 0 chr1 20121312 20121371 -262072293 + (TG)n Simple_repeat Simple_repeat 1 60 0 186 278 0 19 chr1 20122641 20122695 -262070969 + MIR SINE MIR 113 165 -97 183 42 0 0 chr1 20123083 20123107 -262070557 + (CGCGG)n Simple_repeat Simple_repeat 1 24 0 21 0 0 0 chr1 20123112 20123133 -262070531 + GC_rich Low_complexity Low_complexity 1 21 0 232 252 9 56 chr1 20123177 20123284 -262070380 + G-rich Low_complexity Low_complexity 1 102 0 214 372 36 15 chr1 20123517 20123654 -262070010 + MIR3 SINE MIR 67 206 -2 1974 160 0 3 chr1 20124540 20124853 -262068811 - AluJb SINE Alu 0 312 1 289 241 172 0 chr1 20125291 20125378 -262068286 - MIR3 SINE MIR -20 188 87 210 130 109 0 chr1 20125568 20125614 -262068050 - MIR SINE MIR -123 139 89 288 359 42 35 chr1 20126036 20126178 -262067486 + MIR3 SINE MIR 59 201 -7 183 272 97 39 chr1 20126514 20126617 -262067047 + MIR SINE MIR 19 127 -81 265 363 35 0 chr1 20126872 20126985 -262066679 - MIR3 SINE MIR -49 159 43 314 316 59 26 chr1 20127230 20127382 -262066282 + MIR3 SINE MIR 3 159 -49 228 213 0 0 chr1 20128006 20128053 -262065611 + C-rich Low_complexity Low_complexity 1 47 0 584 297 96 23 chr1 20128501 20128804 -262064860 - L2 LINE L2 -1 3312 2988 297 289 67 44 chr1 20128841 20128976 -262064688 - MIR SINE MIR -18 244 107 457 337 86 0 chr1 20129046 20129221 -262064443 - MIR SINE MIR -25 237 48 195 139 0 0 chr1 20129389 20129425 -262064239 + (T)n Simple_repeat Simple_repeat 1 36 0 458 282 40 0 chr1 20129911 20130035 -262063629 - MIR SINE MIR -114 148 20 559 193 40 47 chr1 20130961 20131111 -262062553 - MIR SINE MIR -68 194 46 378 57 0 0 chr1 20131981 20132034 -262061630 + (TG)n Simple_repeat Simple_repeat 1 53 0 451 273 65 26 chr1 20132229 20132383 -262061281 + MIR SINE MIR 103 262 0 2059 102 7 20 chr1 20132424 20132728 -262060936 + AluSx SINE Alu 3 302 -10 1916 137 13 3 chr1 20132923 20133223 -262060441 + AluJb SINE Alu 1 303 -9 277 222 0 16 chr1 20134409 20134472 -262059192 + C-rich Low_complexity Low_complexity 3 64 0 311 306 106 25 chr1 20134602 20134762 -262058902 - MIR SINE MIR -1 261 89 422 241 0 37 chr1 20135149 20135336 -262058328 + (TG)n Simple_repeat Simple_repeat 1 180 0 212 287 35 91 chr1 20135363 20135506 -262058158 + L2 LINE L2 3163 3297 -16 485 221 10 0 chr1 20135918 20136022 -262057642 - MER81 DNA DNA -9 105 1 301 320 10 10 chr1 20136380 20136480 -262057184 + MIR SINE MIR 18 117 -145 278 297 54 18 chr1 20137088 20137199 -262056465 + MIR SINE MIR 98 212 -50 393 285 204 16 chr1 20137698 20137884 -262055780 + MIR SINE MIR 23 243 -19 224 337 20 50 chr1 20138423 20138524 -262055140 + MIR SINE MIR 68 165 -97 294 29 0 0 chr1 20138627 20138662 -262055002 + (TTCA)n Simple_repeat Simple_repeat 2 36 0 1999 144 3 10 chr1 20138771 20139083 -262054581 - AluSx SINE Alu -2 310 1 469 313 44 62 chr1 20139089 20139361 -262054303 - L1ME4a LINE L1 -6 6115 5849 351 277 2 126 chr1 20139473 20139582 -262054082 - MIR SINE MIR -62 146 73 1960 138 3 0 chr1 20139582 20139892 -262053772 - AluSx SINE Alu 0 311 1 351 277 2 126 chr1 20139892 20139932 -262053732 - MIR SINE MIR -135 73 30 592 204 99 14 chr1 20140333 20140475 -262053189 - MIR3 SINE MIR -4 204 51 348 250 37 98 chr1 20140734 20140898 -262052766 - MIR SINE MIR -51 211 58 * 383 183 10 87 chr1 20140873 20140977 -262052687 - MIR3 SINE MIR -9 199 104 595 276 162 18 chr1 20141158 20141386 -262052278 + MIR SINE MIR 2 262 0 2301 101 3 0 chr1 20141575 20141883 -262051781 - AluSc SINE Alu 0 309 1 1980 137 3 7 chr1 20141883 20142182 -262051482 - AluSx SINE Alu -14 298 1 715 187 41 0 chr1 20142237 20142360 -262051304 + FLAM_C SINE Alu 1 128 -5 181 357 18 27 chr1 20143227 20143339 -262050325 - L3b LINE CR1 -155 1428 1318 389 211 128 28 chr1 20143360 20143469 -262050195 + MIR SINE MIR 51 170 -92 760 48 19 0 chr1 20143558 20143663 -262050001 + (GGAA)n Simple_repeat Simple_repeat 1 107 0 789 188 55 12 chr1 20144251 20144416 -262049248 + MER5B DNA MER1_type 1 172 -6 318 362 64 7 chr1 20144474 20144615 -262049049 + MIR SINE MIR 109 257 -5 1740 173 0 10 chr1 20144629 20144918 -262048746 + AluJb SINE Alu 1 286 -26 578 254 14 0 chr1 20145661 20145799 -262047865 + MIR3 SINE MIR 49 188 -20 492 259 81 51 chr1 20145891 20146054 -262047610 + MIR SINE MIR 39 210 -52 2062 77 4 0 chr1 20146054 20146315 -262047349 + AluSg SINE Alu 41 302 -8 492 259 81 51 chr1 20146315 20146348 -262047316 + MIR SINE MIR 210 241 -21 200 374 157 0 chr1 20146378 20146461 -262047203 + MIR SINE MIR 107 202 -60 293 283 107 78 chr1 20147817 20147912 -262045752 + MIR SINE MIR 46 137 -125 1564 166 57 33 chr1 20147912 20148213 -262045451 + AluJo SINE Alu 1 308 -4 293 283 107 78 chr1 20148213 20148322 -262045342 + MIR SINE MIR 137 256 -6 2052 114 10 16 chr1 20148807 20149114 -262044550 - AluSx SINE Alu -7 305 1 488 330 93 8 chr1 20149286 20149522 -262044142 + MIR SINE MIR 7 262 0 547 252 0 0 chr1 20150332 20150443 -262043221 - L2 LINE L2 -1 3312 3202 536 189 195 38 chr1 20151031 20151190 -262042474 + MER5A DNA MER1_type 1 184 -5 384 248 73 51 chr1 20151560 20151697 -262041967 - MIR3 SINE MIR 0 208 69 183 369 15 0 chr1 20151714 20151779 -262041885 - L2 LINE L2 -31 3282 3217 285 151 0 0 chr1 20152701 20152754 -262040910 + G-rich Low_complexity Low_complexity 1 53 0 192 287 46 58 chr1 20152987 20153074 -262040590 - L2 LINE L2 -11 3261 3176 2223 116 0 0 chr1 20154012 20154322 -262039342 + AluSg SINE Alu 1 310 0 2057 105 45 0 chr1 20154340 20154626 -262039038 + AluSp SINE Alu 1 299 -14 454 230 206 6 chr1 20155111 20155276 -262038388 + MIR SINE MIR 15 212 -50 180 125 0 0 chr1 20155994 20156026 -262037638 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 242 209 0 81 chr1 20156034 20156120 -262037544 - L2 LINE L2 -1 3271 3193 703 181 102 14 chr1 20156167 20156355 -262037309 - MIR SINE MIR 0 262 59 200 260 11 97 chr1 20156420 20156547 -262037117 - MIR SINE MIR -71 137 59 280 315 75 27 chr1 20156711 20156857 -262036807 - MIR SINE MIR -55 155 1 2288 72 13 31 chr1 20157086 20157404 -262036260 + AluSp SINE Alu 1 312 -1 1849 118 52 0 chr1 20157902 20158248 -262035416 - AluSq SINE Alu 0 360 1 183 336 48 10 chr1 20158776 20158880 -262034784 + MIR SINE MIR 28 135 -127 244 184 61 0 chr1 20159633 20159682 -262033982 - L2 LINE L2 0 3313 3262 1902 147 7 0 chr1 20159768 20160068 -262033596 + AluSx SINE Alu 1 302 -10 387 356 75 16 chr1 20161564 20161906 -262031758 - L2 LINE L2 -1 3312 2866 363 44 0 0 chr1 20162109 20162154 -262031510 + (CACCAT)n Simple_repeat Simple_repeat 3 47 0 2073 122 0 0 chr1 20163085 20163401 -262030263 - AluSx SINE Alu 0 316 1 461 257 31 32 chr1 20163410 20163569 -262030095 - MIR SINE MIR -62 146 44 338 269 56 9 chr1 20163653 20163761 -262029903 + MIR SINE MIR 57 169 -93 762 253 72 16 chr1 20164271 20164575 -262029089 + MER113 DNA MER1_type? 11 331 -190 966 233 30 0 chr1 20164586 20164788 -262028876 - MER3 DNA MER1_type -1 208 1 2039 126 0 40 chr1 20164829 20165154 -262028510 + AluSx SINE Alu 1 312 0 263 295 42 21 chr1 20165175 20165270 -262028394 + L2 LINE L2 3133 3229 -43 198 268 0 0 chr1 20165988 20166044 -262027620 + L2 LINE L2 2928 2983 -289 232 303 128 28 chr1 20166302 20166411 -262027253 + L2 LINE L2 3153 3272 0 288 299 0 13 chr1 20166451 20166528 -262027136 + GA-rich Low_complexity Low_complexity 2 77 0 542 276 16 0 chr1 20167045 20167172 -262026492 - MIR3 SINE MIR -40 168 40 1689 176 7 3 chr1 20167195 20167479 -262026185 - AluJo SINE Alu -17 295 11 313 247 0 41 chr1 20167510 20167607 -262026057 - L1ME1 LINE L1 -6 6160 6068 227 337 0 0 chr1 20167735 20167818 -262025846 - L1ME1 LINE L1 -2037 5771 5689 254 278 0 9 chr1 20168371 20168470 -262025194 + GA-rich Low_complexity Low_complexity 2 101 -14 2225 109 0 0 chr1 20168470 20168774 -262024890 + AluSx SINE Alu 1 304 -8 254 278 0 9 chr1 20168774 20168789 -262024875 + GA-rich Low_complexity Low_complexity 101 115 0 253 404 40 15 chr1 20169456 20169654 -262024010 - MIR SINE MIR 0 262 60 2103 90 11 0 chr1 20170395 20170736 -262022928 + AluSp SINE Alu 6 349 0 387 288 144 13 chr1 20170860 20171013 -262022651 + MIR3 SINE MIR 20 192 -16 272 312 0 13 chr1 20171030 20171107 -262022557 + L3 LINE CR1 1413 1488 -89 232 299 217 37 chr1 20171269 20171486 -262022178 + MIR SINE MIR 7 262 0 421 277 189 0 chr1 20171545 20171693 -262021971 - L2 LINE L2 -3 3310 3135 2319 97 7 3 chr1 20172267 20172577 -262021087 - AluSq SINE Alu -2 311 1 579 272 47 87 chr1 20172577 20172745 -262020919 - MIR SINE MIR -14 248 92 3587 94 17 13 chr1 20172745 20173266 -262020398 + L1MA3 LINE L1 5782 6304 -1 579 272 47 87 chr1 20173266 20173351 -262020313 - MIR SINE MIR -170 92 5 192 361 31 0 chr1 20173513 20173610 -262020054 + MIR3 SINE MIR 91 190 -18 607 240 157 5 chr1 20173636 20173840 -262019824 - MIR SINE MIR -25 237 3 290 297 82 69 chr1 20173932 20174164 -262019500 + L2 LINE L2 3024 3258 -14 234 176 0 0 chr1 20174188 20174239 -262019425 + GA-rich Low_complexity Low_complexity 2 52 0 494 278 96 33 chr1 20174435 20174483 -262019181 + MER113 DNA MER1_type? 161 205 -316 293 0 0 26 chr1 20174483 20174521 -262019143 + (CA)n Simple_repeat Simple_repeat 2 38 0 494 278 96 33 chr1 20174521 20174742 -262018922 + MER113 DNA MER1_type? 205 447 -74 236 77 26 0 chr1 20175300 20175339 -262018325 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 341 208 160 0 chr1 20175567 20175673 -262017991 - L2 LINE L2 -237 3035 2913 571 226 24 71 chr1 20175753 20175775 -262017889 + MIR SINE MIR 28 49 -213 2406 51 3 3 chr1 20175775 20176071 -262017593 - AluY SINE Alu -15 296 1 571 226 24 71 chr1 20176071 20176216 -262017448 + MIR SINE MIR 49 187 -75 360 0 0 0 chr1 20176288 20176328 -262017336 + (TG)n Simple_repeat Simple_repeat 2 41 0 544 264 104 21 chr1 20176515 20176720 -262016944 + MIR SINE MIR 7 223 -39 194 331 8 79 chr1 20177224 20177351 -262016313 + MER5A DNA MER1_type 41 158 -31 * 332 272 37 7 chr1 20177251 20177385 -262016279 - MER5A DNA MER1_type -41 137 9 495 230 0 0 chr1 20177519 20177684 -262015980 + (TG)n Simple_repeat Simple_repeat 2 166 0 2150 89 3 35 chr1 20178261 20178576 -262015088 + AluSx SINE Alu 1 305 -7 436 314 64 19 chr1 20178751 20178907 -262014757 + MIR SINE MIR 6 168 -94 258 175 0 0 chr1 20179013 20179053 -262014611 - MIR SINE MIR -6 256 217 370 317 75 30 chr1 20180118 20180317 -262013347 + MIR SINE MIR 49 256 -6 806 176 59 59 chr1 20180399 20180549 -262013115 + MER58A DNA MER1_type 5 157 -2263 2173 132 3 0 chr1 20180549 20180859 -262012805 + AluSx SINE Alu 1 311 -1 806 176 59 59 chr1 20180859 20180912 -262012752 + MER58A DNA MER1_type 156 208 -16 662 299 31 21 chr1 20181026 20181220 -262012444 + MIR SINE MIR 59 254 -8 2029 114 0 63 chr1 20182661 20182993 -262010671 - AluSx SINE Alu -1 311 1 493 230 86 20 chr1 20183280 20183432 -262010232 - L2 LINE L2 -2 3311 3150 188 372 13 0 chr1 20183470 20183548 -262010116 - MIR SINE MIR 0 262 184 181 260 140 0 chr1 20183545 20183595 -262010069 - MIR SINE MIR -186 76 20 * 2291 107 0 16 chr1 20183618 20183935 -262009729 - AluSx SINE Alu 0 312 1 1801 149 4 0 chr1 20184488 20184769 -262008895 + AluJb SINE Alu 5 286 -26 229 265 20 0 chr1 20184981 20185030 -262008634 - L2 LINE L2 -86 3186 3137 189 248 19 124 chr1 20185354 20185459 -262008205 - MIR SINE MIR -74 134 41 191 111 0 0 chr1 20185840 20185870 -262007794 - MIR SINE MIR -110 152 124 249 292 0 0 chr1 20185895 20185960 -262007704 - L2 LINE L2 0 3272 3208 212 250 188 0 chr1 20185956 20186020 -262007644 - MIR SINE MIR -182 80 5 * 462 310 185 0 chr1 20186294 20186478 -262007186 - MIR SINE MIR -12 250 33 674 205 95 35 chr1 20187366 20187566 -262006098 + MIR SINE MIR 40 251 -11 2072 126 0 0 chr1 20189010 20189303 -262004361 + AluSx SINE Alu 1 293 -19 612 308 27 7 chr1 20190095 20190139 -262003525 + MIR SINE MIR 16 58 -204 2088 103 14 7 chr1 20190139 20190462 -262003202 + AluSx SINE Alu 1 312 0 612 308 27 7 chr1 20190462 20190651 -262003013 + MIR SINE MIR 58 252 -10 450 347 35 6 chr1 20190738 20190911 -262002753 + MIR3 SINE MIR 27 204 -4 299 253 62 84 chr1 20191324 20191502 -262002162 + L2 LINE L2 2914 3087 -185 556 303 6 22 chr1 20191589 20191767 -262001897 - MIR SINE MIR 0 262 88 648 322 75 5 chr1 20191783 20191997 -262001667 + MIR SINE MIR 2 230 -32 230 321 110 0 chr1 20192011 20192120 -262001544 - MIR SINE MIR -68 140 20 207 263 0 92 chr1 20192946 20193098 -262000566 + C-rich Low_complexity Low_complexity 4 141 0 204 40 0 0 chr1 20193247 20193272 -262000392 + (CCG)n Simple_repeat Simple_repeat 3 27 0 381 284 149 55 chr1 20193642 20193931 -261999733 + L2 LINE L2 2937 3252 -20 185 309 182 9 chr1 20193958 20194068 -261999596 - L2 LINE L2 -25 3288 3160 286 333 90 40 chr1 20194389 20194566 -261999098 + L3 LINE CR1 1347 1532 -45 261 311 66 25 chr1 20194585 20194707 -261998957 - MER5A DNA MER1_type -41 148 22 2229 81 7 3 chr1 20194854 20195150 -261998514 - AluSg SINE Alu -13 297 1 193 303 45 0 chr1 20195223 20195289 -261998375 - MIR3 SINE MIR -17 191 123 198 233 33 50 chr1 20196344 20196404 -261997260 + MER5A DNA MER1_type 130 188 -1 198 71 0 0 chr1 20196927 20196955 -261996709 + (GA)n Simple_repeat Simple_repeat 1 28 0 796 238 5 26 chr1 20198175 20198368 -261995296 + MIR SINE MIR 74 262 0 219 355 50 16 chr1 20199177 20199298 -261994366 - L2 LINE L2 -45 3227 3103 334 336 16 0 chr1 20200856 20200978 -261992686 + MIR SINE MIR 20 143 -119 244 270 0 0 chr1 20201024 20201087 -261992577 - HsTC2 DNA Tc2 -609 1289 1227 201 74 0 0 chr1 20201281 20201308 -261992356 - MIR SINE MIR -119 143 117 205 298 0 0 chr1 20201610 20201657 -261992007 + C-rich Low_complexity Low_complexity 1 47 0 351 167 0 0 chr1 20202190 20202256 -261991408 + (TG)n Simple_repeat Simple_repeat 2 67 0 327 25 0 0 chr1 20202350 20202390 -261991274 + (TG)n Simple_repeat Simple_repeat 2 41 0 258 196 20 0 chr1 20202633 20202684 -261990980 - L2 LINE L2 0 3313 3262 182 393 22 15 chr1 20202872 20203007 -261990657 - L3b LINE CR1 -150 1433 1298 420 271 28 11 chr1 20203300 20203477 -261990187 + (CA)n Simple_repeat Simple_repeat 1 180 0 357 24 0 0 chr1 20203579 20203621 -261990043 + (CA)n Simple_repeat Simple_repeat 1 42 0 383 296 115 35 chr1 20203703 20203880 -261989784 + MIR SINE MIR 25 211 -51 207 264 0 23 chr1 20204525 20204612 -261989052 + (TG)n Simple_repeat Simple_repeat 2 86 0 324 176 11 77 chr1 20204728 20204789 -261988875 - MER5B DNA MER1_type -1 177 122 2201 88 3 16 chr1 20204789 20205094 -261988570 + AluSp SINE Alu 1 301 -12 324 176 11 77 chr1 20205094 20205123 -261988541 - MER5B DNA MER1_type -56 122 93 216 239 0 0 chr1 20205106 20205152 -261988512 + MER5B DNA MER1_type 133 178 0 * 231 266 22 11 chr1 20205578 20205686 -261987978 + MIR SINE MIR 96 205 -57 663 237 54 16 chr1 20206302 20206488 -261987176 - MIR SINE MIR -4 258 66 248 238 12 48 chr1 20207092 20207176 -261986488 + G-rich Low_complexity Low_complexity 2 82 0 560 270 75 23 chr1 20207599 20207773 -261985891 + MIR SINE MIR 20 202 -60 869 237 197 15 chr1 20208244 20208569 -261985095 + L2 LINE L2 2926 3309 -4 347 303 25 17 chr1 20208572 20208691 -261984973 - L2 LINE L2 -3 3269 3150 200 203 51 17 chr1 20208687 20208746 -261984918 + L2 LINE L2 3249 3309 -4 * 245 240 32 96 chr1 20210069 20210194 -261983470 + MIR SINE MIR 80 196 -66 189 250 78 0 chr1 20210802 20210866 -261982798 + L2 LINE L2 3021 3089 -183 252 100 0 0 chr1 20211491 20211531 -261982133 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 239 333 140 0 chr1 20212198 20212291 -261981373 - MIR SINE MIR -65 143 38 1413 185 32 42 chr1 20212315 20212393 -261981271 - Charlie5 DNA MER1_type -8 2616 2539 2329 117 0 0 chr1 20212393 20212693 -261980971 + AluSx SINE Alu 1 300 -12 1413 185 32 42 chr1 20212693 20212992 -261980672 - Charlie5 DNA MER1_type -85 2539 2243 606 213 8 8 chr1 20213007 20213134 -261980530 - MER3 DNA MER1_type -82 127 48 243 365 0 0 chr1 20213658 20213762 -261979902 + (TG)n Simple_repeat Simple_repeat 1 104 0 204 380 23 12 chr1 20213817 20213988 -261979676 + (TATATG)n Simple_repeat Simple_repeat 2 174 0 285 235 0 51 chr1 20214046 20214144 -261979520 + (TATATG)n Simple_repeat Simple_repeat 2 94 0 294 290 5 10 chr1 20214173 20214383 -261979281 + (TG)n Simple_repeat Simple_repeat 1 208 0 278 316 0 10 chr1 20214739 20214837 -261978827 + CT-rich Low_complexity Low_complexity 2 98 0 256 246 18 0 chr1 20215017 20215074 -261978590 + MIR3 SINE MIR 102 159 -49 294 276 133 0 chr1 20215367 20215465 -261978199 - MIR SINE MIR -62 146 36 186 256 0 0 chr1 20215668 20215707 -261977957 - L2 LINE L2 -12 3301 3263 * 311 255 88 0 chr1 20215703 20215805 -261977859 - MIR SINE MIR -72 190 80 369 286 87 32 chr1 20216645 20216830 -261976834 + MIR SINE MIR 68 262 0 3819 103 37 35 chr1 20216857 20217377 -261976287 + L1MA4A LINE L1 5643 6166 -137 2323 122 0 3 chr1 20217377 20217689 -261975975 + AluSx SINE Alu 1 311 -1 3819 103 37 35 chr1 20217689 20217817 -261975847 + L1MA4A LINE L1 6166 6292 -11 834 272 19 3 chr1 20218087 20218316 -261975348 + MIR SINE MIR 31 256 -6 2538 75 3 0 chr1 20218356 20218664 -261975000 - AluY SINE Alu 0 311 3 367 265 36 36 chr1 20219086 20219224 -261974440 - MIR SINE MIR -61 147 52 625 288 24 19 chr1 20219311 20219516 -261974148 - MIR SINE MIR -6 256 51 981 108 12 6 chr1 20220625 20220955 -261972709 + (TGGA)n Simple_repeat Simple_repeat 1 332 0 181 295 39 39 chr1 20223218 20223296 -261970368 - L3b LINE CR1 -135 1448 1371 23 33 0 0 chr1 20224006 20224036 -261969628 + AT_rich Low_complexity Low_complexity 1 30 0 221 212 30 0 chr1 20224863 20224929 -261968735 + (TG)n Simple_repeat Simple_repeat 2 69 0 299 327 10 10 chr1 20225178 20225279 -261968385 + L2 LINE L2 3169 3269 -3 944 146 21 0 chr1 20225497 20225641 -261968023 - FAM SINE Alu -15 170 24 997 194 44 9 chr1 20225668 20225895 -261967769 - LTR16A1 LTR ERVL -55 402 168 523 280 21 0 chr1 20225956 20226099 -261967565 - LTR16A1 LTR ERVL -311 146 1 293 290 80 14 chr1 20226502 20226640 -261967024 + MIR3 SINE MIR 38 184 -24 276 221 38 76 chr1 20226867 20226998 -261966666 - MLT1L LTR MaLR -385 126 1 209 187 69 0 chr1 20227475 20227540 -261966124 + MIR SINE MIR 75 112 -96 748 237 45 15 chr1 20227567 20227873 -261965791 - MLT1I LTR MaLR -29 380 38 249 264 150 36 chr1 20228053 20228220 -261965444 - MIR SINE MIR -12 250 65 389 341 63 10 chr1 20228542 20228747 -261964917 - MIR SINE MIR -45 217 2 457 219 0 44 chr1 20228832 20228946 -261964718 - MLT1H LTR MaLR -13 536 428 1555 259 56 52 chr1 20228946 20229537 -261964127 + MLT1E LTR MaLR 1 593 0 294 200 0 43 chr1 20229708 20229778 -261963886 - MLT1H LTR MaLR -396 153 87 595 228 60 27 chr1 20230316 20230500 -261963164 + MIR SINE MIR 18 207 -55 1166 220 152 28 chr1 20231097 20231696 -261961968 - L1MDb LINE L1 -3900 2640 1968 1419 187 15 18 chr1 20231703 20231976 -261961688 + MSTB LTR MaLR 155 426 0 258 294 0 0 chr1 20232156 20232241 -261961423 + MLT1I LTR MaLR 323 407 -2 623 152 19 0 chr1 20232317 20232422 -261961242 + L1MC1 LINE L1 6056 6162 -171 2494 140 29 14 chr1 20232422 20232837 -261960827 + MSTA LTR MaLR 1 421 -7 820 201 5 11 chr1 20232837 20233021 -261960643 + L1MC1 LINE L1 6151 6333 0 2159 72 19 0 chr1 20233022 20233285 -261960379 + AluY SINE Alu 36 303 -8 450 252 68 38 chr1 20233289 20233555 -261960109 - HAL1b LINE L1 -404 944 671 1122 220 51 57 chr1 20233574 20234065 -261959599 - L1M3b LINE L1 -4520 1951 1506 861 268 38 90 chr1 20234060 20234561 -261959103 - L1MDb LINE L1 -5160 1383 909 * 332 308 135 24 chr1 20234617 20234825 -261958839 - L1MDb LINE L1 -5598 932 702 2058 133 7 0 chr1 20235146 20235432 -261958232 + AluSx SINE Alu 1 288 -24 509 80 13 0 chr1 20235432 20235507 -261958157 + (GGA)n Simple_repeat Simple_repeat 1 76 0 2205 110 0 3 chr1 20235718 20236010 -261957654 - AluSg SINE Alu -12 298 8 2010 91 0 4 chr1 20236017 20236269 -261957395 - AluSg SINE Alu -10 300 50 435 253 58 58 chr1 20236621 20236733 -261956931 + MER5B DNA MER1_type 1 115 -63 1543 145 65 36 chr1 20236733 20237009 -261956655 - AluJb SINE Alu -25 287 4 435 253 58 58 chr1 20237009 20237070 -261956594 + MER5B DNA MER1_type 114 174 -4 1222 228 75 19 chr1 20237961 20238321 -261955343 - MER77 LTR ERV1 -11 594 215 354 271 0 0 chr1 20238338 20238423 -261955241 - MLT1I LTR MaLR -2 407 323 328 287 9 32 chr1 20238503 20238620 -261955044 - MLT1J LTR MaLR -231 199 73 453 332 73 0 chr1 20239295 20239500 -261954164 - MIR SINE MIR -25 237 18 475 245 44 25 chr1 20239537 20239696 -261953968 - L1MC5 LINE L1 -97 7864 7703 363 314 54 22 chr1 20239845 20240030 -261953634 + MIR SINE MIR 12 202 -60 680 254 42 0 chr1 20240071 20240236 -261953428 + MIR SINE MIR 74 245 -17 1167 152 18 42 chr1 20240381 20240598 -261953066 + MER20 DNA MER1_type 8 219 0 253 313 21 10 chr1 20241021 20241117 -261952547 + MIR SINE MIR 25 121 -141 192 158 0 0 chr1 20241206 20241244 -261952420 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 972 299 154 28 chr1 20241255 20241958 -261951706 - L2 LINE L2 -462 2852 2062 260 313 10 0 chr1 20242266 20242362 -261951302 + MIR SINE MIR 59 155 -107 392 280 48 8 chr1 20242630 20242706 -261950958 + MER5B DNA MER1_type 49 133 -45 333 68 0 0 chr1 20242706 20242750 -261950914 + (CAT)n Simple_repeat Simple_repeat 2 45 0 392 280 48 8 chr1 20242750 20242798 -261950866 + MER5B DNA MER1_type 133 178 0 341 294 15 22 chr1 20243060 20243196 -261950468 - MIR SINE MIR -50 212 78 197 196 71 0 chr1 20243268 20243324 -261950340 + L2 LINE L2 3213 3272 0 575 242 78 7 chr1 20243834 20243987 -261949677 - MER58B DNA MER1_type 0 341 178 2046 85 15 8 chr1 20243992 20244251 -261949413 - AluSx SINE Alu -51 261 1 274 314 48 24 chr1 20244644 20244768 -261948896 + MIR SINE MIR 20 146 -62 2487 137 23 30 chr1 20244872 20245256 -261948408 + MSTA LTR MaLR 1 383 -45 1948 162 0 3 chr1 20245256 20245552 -261948112 - AluSx SINE Alu -17 295 1 2487 137 23 30 chr1 20245552 20245597 -261948067 + MSTA LTR MaLR 383 427 -1 216 316 44 26 chr1 20246097 20246211 -261947453 + MIR SINE MIR 106 221 -41 184 197 0 106 chr1 20247032 20247098 -261946566 + MIR SINE MIR 78 136 -72 407 237 32 0 chr1 20247199 20247292 -261946372 + MIR SINE MIR 90 185 -77 337 272 136 0 chr1 20247444 20247547 -261946117 + MIR SINE MIR 30 146 -62 238 338 123 46 chr1 20248251 20248618 -261945046 - L2 LINE L2 -5 3267 2873 566 279 73 0 chr1 20248719 20248884 -261944780 - MIR SINE MIR -34 228 52 372 22 0 0 chr1 20248888 20248933 -261944731 + (TG)n Simple_repeat Simple_repeat 2 46 0 2243 123 0 0 chr1 20248934 20249235 -261944429 - AluSx SINE Alu -11 301 1 696 220 57 6 chr1 20249513 20249690 -261943974 - MER5A DNA MER1_type -3 186 1 190 250 100 0 chr1 20249764 20249824 -261943840 - MIR SINE MIR -102 160 95 463 284 130 25 chr1 20249887 20250242 -261943422 + L2 LINE L2 2921 3312 -1 327 306 83 23 chr1 20250667 20250883 -261942781 - L1MC4a LINE L1 -1777 6031 5803 298 341 81 0 chr1 20250967 20251172 -261942492 + MIR SINE MIR 34 256 -6 315 331 59 49 chr1 20251722 20252027 -261941637 - L1ME4a LINE L1 -221 5900 5593 629 241 74 5 chr1 20252602 20252824 -261940840 + MIR SINE MIR 10 248 -14 231 278 0 28 chr1 20253517 20253589 -261940075 + C-rich Low_complexity Low_complexity 5 74 0 404 310 47 18 chr1 20254780 20254951 -261938713 + MIR SINE MIR 12 187 -75 810 236 65 8 chr1 20255228 20255469 -261938195 - MIR SINE MIR -1 261 5 229 361 38 44 chr1 20255731 20255889 -261937775 + MIR3 SINE MIR 9 165 -43 195 42 0 0 chr1 20455971 20455995 -261737669 + (G)n Simple_repeat Simple_repeat 1 24 0 1328 53 0 25 chr1 20456152 20456686 -261736978 + (TCCA)n Simple_repeat Simple_repeat 1 520 0 202 338 54 0 chr1 20456690 20456764 -261736900 - L2 LINE L2 -4 3309 3232 270 162 126 18 chr1 20457775 20457860 -261735804 + MIR SINE MIR 21 106 -102 198 329 14 0 chr1 20458665 20458735 -261734929 + MER5A DNA MER1_type 119 189 0 * 519 244 16 19 chr1 20458735 20458876 -261734788 + MIR SINE MIR 31 173 -41 229 281 135 0 chr1 20458989 20459085 -261734579 + MIR SINE MIR 33 141 -67 434 317 217 7 chr1 20459480 20459780 -261733884 - L2 LINE L2 -1 3312 2950 353 248 117 29 chr1 20459942 20460079 -261733585 + MIR SINE MIR 58 206 -56 243 213 40 40 chr1 20460432 20460507 -261733157 + MIR SINE MIR 80 154 -108 1094 127 33 6 chr1 20460509 20460690 -261732974 + LTR23 LTR ERV1 4 189 -248 312 277 28 37 chr1 20461138 20461259 -261732405 + MIR3 SINE MIR 45 164 -44 499 286 132 5 chr1 20461833 20462053 -261731611 + MIR SINE MIR 9 256 -6 219 163 0 61 chr1 20462208 20462257 -261731407 + MIR SINE MIR 205 250 -12 409 186 39 49 chr1 20462296 20462398 -261731266 + MIR SINE MIR 62 162 -100 211 315 111 31 chr1 20463145 20463307 -261730357 + MIR3 SINE MIR 1 175 -33 235 261 54 45 chr1 20463452 20463563 -261730101 + MIR SINE MIR 59 170 -92 306 273 13 0 chr1 20463880 20463957 -261729707 - MER116 DNA Mariner 0 80 3 222 118 0 0 chr1 20465738 20465772 -261727892 + (TTC)n Simple_repeat Simple_repeat 3 36 0 684 225 9 99 chr1 20465865 20466087 -261727577 - MER20 DNA MER1_type -17 202 1 367 276 181 0 chr1 20466356 20466566 -261727098 - L1ME4a LINE L1 -1 6120 5873 309 279 58 0 chr1 20466571 20466657 -261727007 + L2 LINE L2 3222 3312 -1 399 273 43 29 chr1 20466782 20466921 -261726743 - MIR SINE MIR -55 207 67 324 223 68 29 chr1 20467426 20467529 -261726135 + MIR SINE MIR 80 186 -76 727 275 24 24 chr1 20467769 20467980 -261725684 + MIR SINE MIR 51 261 -1 201 39 0 0 chr1 20468162 20468188 -261725476 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1867 128 3 24 chr1 20468190 20468478 -261725186 - AluJb SINE Alu -30 282 1 271 254 49 16 chr1 20468574 20468696 -261724968 + MIR SINE MIR 21 146 -62 374 264 87 34 chr1 20468797 20468902 -261724762 + MIR SINE MIR 37 135 -127 1341 162 25 30 chr1 20468902 20468942 -261724722 - MER46A DNA MER2_type -2497 234 195 2061 129 0 10 chr1 20468942 20469251 -261724413 - AluSx SINE Alu -6 306 1 1341 162 25 30 chr1 20469251 20469445 -261724219 - MER46A DNA MER2_type -2536 195 1 374 264 87 34 chr1 20469445 20469546 -261724118 + MIR SINE MIR 135 253 -9 2224 111 0 0 chr1 20469595 20469901 -261723763 - AluSx SINE Alu -6 306 1 811 219 33 14 chr1 20469903 20470113 -261723551 + LTR23 LTR ERV1 224 437 0 2054 117 0 7 chr1 20470356 20470656 -261723008 + AluSx SINE Alu 1 298 -14 291 114 0 0 chr1 20470940 20470984 -261722680 + (T)n Simple_repeat Simple_repeat 1 44 0 218 291 65 83 chr1 20471855 20472085 -261721579 + L2 LINE L2 2575 2800 -514 431 276 17 0 chr1 20472805 20472921 -261720743 - MIR SINE MIR -105 157 40 199 266 101 13 chr1 20473633 20473712 -261719952 - MIR SINE MIR -88 174 89 373 245 9 28 chr1 20473941 20474047 -261719617 - MER53 DNA DNA -85 104 1 410 264 50 0 chr1 20474684 20474805 -261718859 + L3 LINE CR1 1344 1470 -107 297 279 165 14 chr1 20474873 20475030 -261718634 + MIR SINE MIR 3 180 -67 206 215 139 13 chr1 20475543 20475622 -261718042 - MIR3 SINE MIR -33 175 87 286 221 59 0 chr1 20475766 20475834 -261717830 - MIR SINE MIR -74 188 117 549 217 196 0 chr1 20476062 20476205 -261717459 + MER58C DNA MER1_type 45 215 0 633 238 20 7 chr1 20476353 20476504 -261717160 + MIR SINE MIR 21 173 -89 2132 110 7 3 chr1 20476504 20476813 -261716851 + AluSp SINE Alu 1 310 -3 1661 141 4 0 chr1 20476844 20477092 -261716572 + AluJo SINE Alu 1 249 -63 2301 94 3 0 chr1 20477412 20477720 -261715944 + AluSx SINE Alu 1 309 -3 2057 128 0 3 chr1 20478204 20478500 -261715164 - AluSx SINE Alu -17 295 1 203 79 26 0 chr1 20478728 20478766 -261714898 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 215 357 12 12 chr1 20479309 20479393 -261714271 - MIR SINE MIR -102 106 23 2314 71 0 0 chr1 20479974 20480268 -261713396 - AluY SINE Alu -17 294 1 2391 80 0 3 chr1 20480652 20480966 -261712698 - AluSq SINE Alu 0 313 1 2316 91 0 3 chr1 20481995 20482304 -261711360 - AluSc SINE Alu -1 308 1 492 288 92 38 chr1 20482494 20482841 -261710823 - L1ME LINE L1 -333 5788 5423 274 262 5 64 chr1 20483595 20483782 -261709882 + G-rich Low_complexity Low_complexity 5 180 0 187 263 66 53 chr1 20484682 20484758 -261708906 - MIR SINE MIR -55 153 77 287 167 15 0 chr1 20485738 20485804 -261707860 + C-rich Low_complexity Low_complexity 3 69 0 292 283 148 67 chr1 20486347 20486630 -261707034 + L2 LINE L2 2871 3176 -137 2325 90 3 0 chr1 20486701 20487012 -261706652 - AluSx SINE Alu 0 312 1 1730 147 39 7 chr1 20487012 20487298 -261706366 - AluJb SINE Alu -17 295 1 794 157 72 12 chr1 20487304 20487470 -261706194 - L1MA8 LINE L1 -1 6290 6115 1441 139 52 38 chr1 20487470 20487737 -261705927 - AluJo SINE Alu -3 309 39 2695 183 19 4 chr1 20487740 20488275 -261705389 - L1MA8 LINE L1 -161 6130 5588 210 270 11 67 chr1 20490131 20490220 -261703444 + MIR SINE MIR 60 143 -65 215 239 11 125 chr1 20490589 20490614 -261703050 + MIR SINE MIR 8 34 -228 1959 119 34 3 chr1 20490614 20490907 -261702757 + AluSx SINE Alu 1 302 -10 215 239 11 125 chr1 20490907 20490969 -261702695 + MIR SINE MIR 34 85 -177 2488 214 114 72 chr1 20491383 20491473 -261702191 + L1MC4a LINE L1 6523 6608 -1200 2322 100 0 0 chr1 20491473 20491782 -261701882 - AluSg SINE Alu -1 309 1 2488 214 114 72 chr1 20491782 20491905 -261701759 + L1MC4a LINE L1 6608 6724 -1084 232 162 0 0 chr1 20491905 20491942 -261701722 - Tigger2 DNA MER2_type 0 2718 2682 2488 214 114 72 chr1 20491942 20492245 -261701419 + L1MC4a LINE L1 6724 7013 -795 2244 92 0 29 chr1 20492245 20492560 -261701104 + AluSc SINE Alu 1 306 -3 2488 214 114 72 chr1 20492560 20493136 -261700528 + L1MC4a LINE L1 7013 7712 -96 2229 101 0 3 chr1 20493203 20493511 -261700153 + AluSg SINE Alu 1 307 -3 1772 164 3 20 chr1 20493586 20493884 -261699780 + AluJb SINE Alu 3 295 -17 187 402 27 36 chr1 20494373 20494485 -261699179 - L3b LINE CR1 -44 1539 1429 527 331 12 0 chr1 20494626 20494795 -261698869 - MIR SINE MIR -3 259 89 809 228 6 0 chr1 20494908 20495070 -261698594 - AluSg/x SINE Alu -20 290 128 2200 105 7 0 chr1 20495072 20495376 -261698288 - AluSq SINE Alu -7 306 1 250 118 0 118 chr1 20495386 20495454 -261698210 - MER69 DNA AcHobo -16 2510 2451 1578 142 91 11 chr1 20495465 20495485 -261698179 - AluSg SINE Alu -4 306 289 686 53 11 0 chr1 20495485 20495580 -261698084 + (TTCC)n Simple_repeat Simple_repeat 3 98 0 1578 142 91 11 chr1 20495580 20495833 -261697831 - AluSg SINE Alu -21 289 11 467 246 26 0 chr1 20495842 20495956 -261697708 - MER69 DNA AcHobo -1075 151 35 406 301 6 26 chr1 20496191 20496347 -261697317 - MER5A DNA MER1_type -23 166 14 215 314 24 32 chr1 20496632 20496756 -261696908 - L2 LINE L2 -165 3107 2985 * 592 277 50 84 chr1 20496742 20497063 -261696601 - L2 LINE L2 -45 3227 2918 1545 231 124 45 chr1 20497131 20497680 -261695984 + MLT1G1 LTR MaLR 4 595 0 580 352 120 6 chr1 20497815 20498156 -261695508 - L3 LINE CR1 -2 1575 1196 352 309 161 0 chr1 20498197 20498365 -261695299 + MIR SINE MIR 67 261 -1 851 54 9 0 chr1 20499018 20499129 -261694535 - L1PA4 LINE L1 0 6155 6044 297 304 109 27 chr1 20499642 20499826 -261693838 + MLT1K LTR MaLR 150 348 -240 1451 178 4 11 chr1 20499908 20500183 -261693481 - AluJo SINE Alu 0 312 40 229 294 15 0 chr1 20500330 20500398 -261693266 - MIR3 SINE MIR -50 158 90 1814 157 3 26 chr1 20501714 20502019 -261691645 - AluJo SINE Alu -14 298 1 319 297 169 7 chr1 20502027 20502175 -261691489 + Charlie8 DNA MER1_type 83 254 -2163 1923 138 7 0 chr1 20502369 20502660 -261691004 - AluSx SINE Alu -19 293 1 508 325 31 0 chr1 20502777 20502940 -261690724 - MIR SINE MIR -54 208 41 291 287 139 0 chr1 20503008 20503109 -261690555 - MER63A DNA MER1_type 0 210 96 204 298 35 0 chr1 20503284 20503341 -261690323 - MIR3 SINE MIR -41 167 109 1967 137 0 20 chr1 20503792 20504098 -261689566 - AluSx SINE Alu -12 300 1 2302 50 7 7 chr1 20504502 20504833 -261688831 + AluY SINE Alu 1 311 0 253 270 125 46 chr1 20505547 20505699 -261687965 + MIR3 SINE MIR 20 183 -25 272 176 20 0 chr1 20505712 20505763 -261687901 - MER81 DNA DNA -62 52 1 469 307 55 78 chr1 20505800 20506018 -261687646 + MIR SINE MIR 39 251 -11 386 313 39 12 chr1 20506040 20506247 -261687417 + MIR SINE MIR 34 250 -12 2179 99 0 0 chr1 20506794 20507078 -261686586 + AluSx SINE Alu 1 284 -28 1130 100 0 0 chr1 20506938 20507079 -261686585 + AluSg/x SINE Alu 145 331 0 415 0 0 0 chr1 20507079 20507125 -261686539 + (TAAA)n Simple_repeat Simple_repeat 3 72 0 259 235 37 37 chr1 20507391 20507472 -261686192 + MIR SINE MIR 93 173 -89 394 285 109 18 chr1 20507566 20507731 -261685933 - MIR SINE MIR -78 184 5 342 115 0 0 chr1 20508393 20508445 -261685219 + (TCCA)n Simple_repeat Simple_repeat 1 52 0 216 247 290 0 chr1 20508519 20508612 -261685052 - L2 LINE L2 -1 3271 3152 964 115 0 8 chr1 20508735 20508865 -261684799 + FLAM_C SINE Alu 1 129 -14 2030 122 43 9 chr1 20508865 20509194 -261684470 - THE1C LTR MaLR -35 340 1 213 338 0 0 chr1 20509491 20509559 -261684105 - MIR SINE MIR -113 149 82 237 314 73 16 chr1 20509652 20509776 -261683888 - L2 LINE L2 -20 3293 3163 216 0 0 0 chr1 20512554 20512578 -261681086 + (CCTG)n Simple_repeat Simple_repeat 2 25 0 288 0 0 0 chr1 20512913 20512945 -261680719 + (CA)n Simple_repeat Simple_repeat 2 33 0 367 256 35 0 chr1 20514961 20515047 -261678617 - MIR SINE MIR -82 180 92 1458 204 20 0 chr1 20516287 20516581 -261677083 - AluSq SINE Alu -13 300 1 689 242 112 0 chr1 20516673 20516896 -261676768 + MER90 LTR ERV1 328 575 0 265 304 152 8 chr1 20517094 20517219 -261676445 - MIR SINE MIR -106 156 14 2157 111 0 26 chr1 20517762 20518068 -261675596 - AluSx SINE Alu -14 298 1 397 221 143 55 chr1 20518566 20518783 -261674881 + MER102a DNA MER1_type 64 299 -31 356 159 0 79 chr1 20519844 20519907 -261673757 - AluSg/x SINE Alu -111 189 135 306 261 99 18 chr1 20519908 20520019 -261673645 + MLT1K LTR MaLR 433 552 -36 830 216 111 11 chr1 20520554 20520795 -261672869 + MIR SINE MIR 1 262 0 317 209 76 38 chr1 20520787 20520892 -261672772 - MIR SINE MIR -107 155 47 * 228 250 0 115 chr1 20521039 20521069 -261672595 - MIR3 SINE MIR -28 180 148 1128 197 99 3 chr1 20521069 20521363 -261672301 + MER33 DNA MER1_type 3 324 0 228 250 0 115 chr1 20521363 20521436 -261672228 - MIR3 SINE MIR -60 148 89 2433 98 0 0 chr1 20521836 20522143 -261671521 + AluSq SINE Alu 1 307 -6 182 118 29 0 chr1 20522167 20522201 -261671463 + (CA)n Simple_repeat Simple_repeat 1 35 0 628 273 49 0 chr1 20522201 20522384 -261671280 + MER112 DNA MER1_type 67 258 -2 210 313 195 0 chr1 20522420 20522548 -261671116 + MIR SINE MIR 110 262 0 1449 167 0 13 chr1 20522854 20523081 -261670583 + AluJo SINE Alu 34 257 -55 445 305 33 33 chr1 20523191 20523401 -261670263 + MIR SINE MIR 47 256 -6 244 290 0 0 chr1 20523463 20523525 -261670139 + L3 LINE CR1 1416 1477 -100 203 204 0 0 chr1 20523556 20523600 -261670064 + L2 LINE L2 3270 3313 0 1889 156 14 7 chr1 20523682 20523971 -261669693 - AluJb SINE Alu -14 298 8 585 214 84 8 chr1 20523971 20524102 -261669562 - MER5B DNA MER1_type -34 144 4 1116 154 42 0 chr1 20524145 20524359 -261669305 + L1MA8 LINE L1 6067 6289 -2 182 256 0 0 chr1 20524659 20524698 -261668966 - L2 LINE L2 -86 3186 3148 227 209 93 23 chr1 20525077 20525163 -261668501 + L2 LINE L2 3161 3252 -61 207 264 157 25 chr1 20526164 20526285 -261667379 + L2 LINE L2 2533 2669 -645 1761 140 0 51 chr1 20526420 20526713 -261666951 - AluJo SINE Alu -14 298 21 622 228 74 0 chr1 20527360 20527522 -261666142 - MER45A DNA AcHobo 0 178 5 1326 217 101 42 chr1 20527526 20527960 -261665704 - MLT1C LTR MaLR -6 461 2 227 257 87 55 chr1 20529355 20529573 -261664091 - L2 LINE L2 -182 3090 2866 231 311 51 20 chr1 20529610 20529806 -261663858 - L2 LINE L2 -557 2757 2556 371 289 31 8 chr1 20530322 20530450 -261663214 + MIR SINE MIR 15 145 -117 2117 129 7 0 chr1 20530981 20531268 -261662396 + AluSx SINE Alu 2 290 -22 263 321 0 0 chr1 20531597 20531678 -261661986 + L1ME4a LINE L1 5967 6047 -74 785 227 64 10 chr1 20531707 20531910 -261661754 + MER58C DNA MER1_type 2 215 0 927 174 14 7 chr1 20532016 20532424 -261661240 + CT-rich Low_complexity Low_complexity 1 410 0 1904 131 7 4 chr1 20532447 20532722 -261660942 - AluSx SINE Alu -23 289 14 439 188 19 32 chr1 20532782 20532936 -261660728 + CT-rich Low_complexity Low_complexity 4 155 0 202 180 67 11 chr1 20533403 20533492 -261660172 + (CAGG)n Simple_repeat Simple_repeat 3 96 0 550 221 210 10 chr1 20533892 20534087 -261659577 + MIR SINE MIR 23 256 -6 3305 210 17 31 chr1 20535109 20535243 -261658421 - L1ME LINE L1 -2023 4621 4487 2058 126 10 26 chr1 20535243 20535553 -261658111 - AluSx SINE Alu -7 305 1 3305 210 17 31 chr1 20535553 20536231 -261657433 - L1ME LINE L1 -2157 4487 3820 446 199 68 7 chr1 20536230 20536376 -261657288 - L1MA10 LINE L1 0 6334 6180 * 2426 100 10 0 chr1 20536427 20536737 -261656927 + AluSp SINE Alu 1 313 0 426 251 72 0 chr1 20536749 20536916 -261656748 - L1MEc LINE L1 -5410 986 808 1862 107 23 8 chr1 20536929 20537192 -261656472 + AluSq SINE Alu 21 287 -26 319 26 0 0 chr1 20537220 20537259 -261656405 - MER4D LTR ERV1 -74 798 760 2915 238 59 31 chr1 20537260 20537872 -261655792 - L1MEc LINE L1 -5571 825 185 2194 138 3 0 chr1 20537872 20538176 -261655488 - AluSx SINE Alu -7 305 1 2915 238 59 31 chr1 20538176 20538339 -261655325 - L1MEc LINE L1 -6211 185 28 1503 217 43 20 chr1 20538328 20538835 -261654829 - L1ME LINE L1 -2806 3838 3320 * 414 250 74 0 chr1 20538836 20538984 -261654680 - L1ME LINE L1 -3446 3198 3040 1284 258 82 59 chr1 20538985 20539863 -261653801 - L1ME LINE L1 -3661 2983 2127 2030 122 0 25 chr1 20539863 20540142 -261653522 - AluSx SINE Alu -40 272 1 1284 258 82 59 chr1 20540142 20540325 -261653339 - L1ME LINE L1 -4517 2127 1950 1772 95 4 0 chr1 20540325 20540556 -261653108 - AluSg/x SINE Alu 0 310 79 1284 258 82 59 chr1 20540556 20540805 -261652859 - L1ME LINE L1 -4694 1950 1679 293 214 30 42 chr1 20541149 20541278 -261652386 - L1ME LINE L1 -5931 703 40 22 0 0 0 chr1 20541330 20541352 -261652312 + AT_rich Low_complexity Low_complexity 1 22 0 924 105 8 0 chr1 20541524 20541648 -261652016 + AluY SINE Alu 1 125 -186 741 143 8 8 chr1 20541685 20541804 -261651860 - L1MB3 LINE L1 -165 6018 5897 1900 152 40 0 chr1 20541804 20542100 -261651564 - AluJb SINE Alu -4 308 1 351 55 36 0 chr1 20542114 20542169 -261651495 - L1PA8 LINE L1 -2 6170 6114 2292 110 0 0 chr1 20542172 20542599 -261651065 - AluSg SINE Alu 0 427 1 1886 220 23 25 chr1 20542602 20543083 -261650581 - L1M4 LINE L1 -816 5330 4851 * 6206 73 25 3 chr1 20543081 20543948 -261649716 + L1PA13 LINE L1 5259 6144 -19 1318 216 18 0 chr1 20543967 20544250 -261649414 - L1M4 LINE L1 -1286 4860 4573 421 253 34 28 chr1 20544306 20544441 -261649223 - L1ME4a LINE L1 -254 5867 5729 2145 120 0 41 chr1 20544441 20544757 -261648907 - AluSx SINE Alu -9 303 1 421 253 34 28 chr1 20544757 20544799 -261648865 - L1ME4a LINE L1 -392 5729 5689 186 343 79 21 chr1 20544879 20544897 -261648767 - MIR3 SINE MIR -30 178 162 323 127 155 28 chr1 20544897 20544968 -261648696 + MADE1 DNA Mariner 1 80 0 186 343 79 21 chr1 20544968 20545089 -261648575 - MIR3 SINE MIR -46 162 31 * 271 254 0 14 chr1 20545055 20545126 -261648538 + MIR SINE MIR 45 114 -148 1632 128 110 11 chr1 20545259 20545541 -261648123 - AluJb SINE Alu -2 310 1 25 90 0 0 chr1 20545576 20545643 -261648021 + AT_rich Low_complexity Low_complexity 1 67 0 2716 180 64 46 chr1 20545768 20546423 -261647241 + LTR65 LTR ERV1 2 668 -1 2472 74 0 3 chr1 20546428 20546726 -261646938 - AluSc SINE Alu -12 297 1 1005 164 11 11 chr1 20546802 20546985 -261646679 - MER5A DNA MER1_type -6 183 1 194 337 71 0 chr1 20547004 20547102 -261646562 + MIR SINE MIR 158 262 0 1942 167 3 3 chr1 20547314 20547619 -261646045 + AluJb SINE Alu 1 305 -7 719 109 0 0 chr1 20547714 20547815 -261645849 - AluSq/x SINE Alu -176 137 37 575 141 0 8 chr1 20547957 20548181 -261645483 - AluJb SINE Alu -15 297 1 332 329 100 0 chr1 20548972 20549142 -261644522 - MIR SINE MIR -45 217 31 2351 104 0 0 chr1 20549502 20549801 -261643863 - AluSc SINE Alu -10 299 1 256 339 118 0 chr1 20550019 20550146 -261643518 - L2 LINE L2 -19 3253 3112 2172 101 3 14 chr1 20550162 20550459 -261643205 + AluSq SINE Alu 1 294 -19 255 250 0 0 chr1 20551395 20551463 -261642201 + (TG)n Simple_repeat Simple_repeat 1 68 0 188 366 11 11 chr1 20551463 20551556 -261642108 + L2 LINE L2 3180 3272 0 319 274 17 34 chr1 20551598 20551715 -261641949 - MIR SINE MIR -62 146 32 345 244 56 16 chr1 20552766 20552911 -261640753 - MIR SINE MIR -58 150 31 558 284 88 0 chr1 20553339 20553543 -261640121 + MIR SINE MIR 35 256 -6 374 325 48 18 chr1 20553586 20553752 -261639912 + MIR SINE MIR 31 201 -61 343 207 37 0 chr1 20553795 20553877 -261639787 - MER5A DNA MER1_type -96 93 9 2382 98 3 0 chr1 20554122 20554417 -261639247 + AluSg SINE Alu 1 296 -14 309 93 19 0 chr1 20554445 20554499 -261639165 + MADE1 DNA Mariner 26 80 0 506 243 9 9 chr1 20555638 20555749 -261637915 + MER81 DNA DNA 3 113 -1 294 256 225 16 chr1 20555750 20555879 -261637785 + MIR SINE MIR 104 259 -3 805 237 27 5 chr1 20556041 20556227 -261637437 + MIR3 SINE MIR 12 201 -7 225 210 0 0 chr1 20556485 20556547 -261637117 + (TTCA)n Simple_repeat Simple_repeat 2 63 0 644 209 30 0 chr1 20556559 20556693 -261636971 + MIR SINE MIR 1 138 -124 183 268 71 0 chr1 20556745 20556801 -261636863 - L2 LINE L2 -1 3271 3212 2158 133 33 25 chr1 20557147 20557508 -261636156 - THE1B LTR MaLR 0 364 1 337 194 24 40 chr1 20557644 20557768 -261635896 - Charlie7 DNA MER1_type -60 2552 2431 1544 148 0 29 chr1 20557774 20558017 -261635647 + AluJo SINE Alu 1 236 -76 563 191 86 0 chr1 20558300 20558405 -261635259 + MER81 DNA DNA 1 114 0 2055 99 67 3 chr1 20558456 20558740 -261634924 + AluSg SINE Alu 9 310 0 2585 233 23 11 chr1 20559661 20560490 -261633174 - L1MEc LINE L1 -3372 2843 2038 867 166 0 0 chr1 20560502 20560673 -261632991 + AluJb SINE Alu 147 317 0 1679 252 94 59 chr1 20560724 20561354 -261632310 - MLT2F LTR ERVL -2 661 10 2747 274 65 24 chr1 20561373 20561913 -261631751 - L1MEc LINE L1 -4407 1989 1472 1868 68 0 0 chr1 20561913 20562134 -261631530 + AluY SINE Alu 1 221 -90 2747 274 65 24 chr1 20562134 20562722 -261630942 - L1MEc LINE L1 -4924 1472 815 461 217 0 58 chr1 20563215 20563335 -261630329 + MER3 DNA MER1_type 1 113 -96 2818 119 24 32 chr1 20563498 20563803 -261629861 - LTR46 LTR ERV1 -2 458 157 2561 54 0 0 chr1 20563803 20564097 -261629567 - AluY SINE Alu -17 294 1 2818 119 24 32 chr1 20564097 20564253 -261629411 - LTR46 LTR ERV1 -303 157 1 520 189 57 25 chr1 20564507 20564629 -261629035 - MIR SINE MIR -116 146 21 267 244 88 44 chr1 20566503 20566663 -261627001 + L2 LINE L2 2925 3091 -181 1002 73 0 0 chr1 20567107 20567243 -261626421 + (TTC)n Simple_repeat Simple_repeat 2 137 0 864 144 0 0 chr1 20567245 20567363 -261626301 - FLAM_C SINE Alu -15 118 1 961 299 34 44 chr1 20567412 20567828 -261625836 - L1MEc LINE L1 -5867 529 117 2185 127 3 13 chr1 20567828 20568142 -261625522 - AluSq SINE Alu -2 311 1 961 299 34 44 chr1 20568142 20568224 -261625440 - L1MEc LINE L1 -6279 117 36 268 288 250 8 chr1 20568870 20569002 -261624662 + MIR3 SINE MIR 24 187 -21 457 232 36 11 chr1 20569980 20570108 -261623556 + MIR SINE MIR 35 166 -58 231 203 0 0 chr1 20570356 20570420 -261623244 + (TTCA)n Simple_repeat Simple_repeat 2 65 0 251 242 16 0 chr1 20570420 20570482 -261623182 - L2 LINE L2 0 3313 3251 447 240 32 32 chr1 20570639 20570764 -261622900 + MIR SINE MIR 65 189 -73 715 239 143 0 chr1 20570826 20571035 -261622629 + MIR SINE MIR 16 254 -8 180 0 0 0 chr1 20571648 20571668 -261621996 + (GGA)n Simple_repeat Simple_repeat 1 20 0 180 125 0 0 chr1 20571900 20571932 -261621732 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 311 288 163 20 chr1 20571934 20572087 -261621577 - L2 LINE L2 -2 3270 3096 2105 135 0 0 chr1 20572274 20572563 -261621101 + AluSx SINE Alu 1 289 -23 235 261 0 0 chr1 20572643 20572689 -261620975 - L2 LINE L2 -205 3067 3022 * 405 291 69 46 chr1 20572685 20572860 -261620804 - L2 LINE L2 0 3313 3135 204 265 166 81 chr1 20572871 20573082 -261620582 - L2 LINE L2 -338 2976 2748 2181 143 10 0 chr1 20573082 20573389 -261620275 - AluSx SINE Alu -2 310 1 402 318 82 64 chr1 20573405 20573625 -261620039 - L1ME2 LINE L1 -227 5937 5714 930 265 41 18 chr1 20573633 20574039 -261619625 - L1ME2 LINE L1 -526 5638 5225 2174 222 26 129 chr1 20574052 20575044 -261618620 - L2 LINE L2 -566 2748 1859 853 248 59 21 chr1 20575127 20575413 -261618251 - MLT1K LTR MaLR -160 428 132 2290 90 3 19 chr1 20575651 20575962 -261617702 - AluSg SINE Alu -4 306 1 836 171 131 9 chr1 20575963 20576185 -261617479 - Charlie5 DNA MER1_type -19 2593 2345 1264 162 25 0 chr1 20576189 20576393 -261617271 - AluJo SINE Alu -18 294 86 417 204 0 11 chr1 20576394 20576487 -261617177 - Charlie5 DNA MER1_type -264 2348 2257 2265 118 0 3 chr1 20576487 20576783 -261616881 + AluSx SINE Alu 1 295 -17 420 178 198 0 chr1 20576810 20576911 -261616753 - MER3 DNA MER1_type -41 168 48 300 269 134 0 chr1 20576918 20577052 -261616612 - MIR3 SINE MIR -54 154 3 369 300 33 33 chr1 20577252 20577372 -261616292 - L2 LINE L2 -9 3263 3144 686 229 45 0 chr1 20577853 20578010 -261615654 - MER45A DNA AcHobo -14 164 1 192 275 66 33 chr1 20578106 20578197 -261615467 - MIR SINE MIR -51 211 118 2214 130 3 3 chr1 20578331 20578797 -261614867 - AluSx SINE Alu 0 466 1 510 57 0 0 chr1 20579316 20579386 -261614278 + (TTCC)n Simple_repeat Simple_repeat 2 71 0 764 290 69 54 chr1 20579394 20579801 -261613863 - L2 LINE L2 -21 3251 2839 314 305 122 46 chr1 20579987 20580089 -261613575 - L1ME4a LINE L1 -21 6100 6007 1879 146 7 40 chr1 20580089 20580229 -261613435 + AluJb SINE Alu 1 144 -168 2027 115 4 4 chr1 20580229 20580532 -261613132 + AluSx SINE Alu 6 308 0 1879 146 7 40 chr1 20580532 20580691 -261612973 + AluJb SINE Alu 144 291 -21 314 305 122 46 chr1 20580691 20581089 -261612575 - L1ME4a LINE L1 -114 6007 5562 243 0 0 0 chr1 20581485 20581512 -261612152 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1765 118 11 63 chr1 20581515 20581802 -261611862 - AluJb SINE Alu -32 280 9 423 0 0 0 chr1 20582284 20582331 -261611333 + (TAA)n Simple_repeat Simple_repeat 2 48 0 1005 271 67 59 chr1 20582525 20582713 -261610951 - L1ME2 LINE L1 -220 5933 5748 1931 171 0 3 chr1 20582713 20583018 -261610646 - AluJo SINE Alu -8 304 1 1005 271 67 59 chr1 20583018 20583644 -261610020 - L1ME2 LINE L1 -405 5748 5139 2066 129 0 4 chr1 20583644 20583922 -261609742 - AluSc SINE Alu -32 277 1 1005 271 67 59 chr1 20583922 20584518 -261609146 - L1ME2 LINE L1 -1014 5139 4549 432 304 50 9 chr1 20584551 20584905 -261608759 - L1ME2 LINE L1 -877 1613 1356 657 159 8 0 chr1 20584907 20585212 -261608452 + CT-rich Low_complexity Low_complexity 1 180 0 1788 186 3 3 chr1 20585212 20585523 -261608141 - AluJb SINE Alu 0 616 1 328 243 0 47 chr1 20585600 20585694 -261607970 - L1ME2 LINE L1 -4875 1244 1154 1731 243 25 45 chr1 20585694 20586209 -261607455 - MLT1D LTR MaLR 0 505 1 328 243 0 47 chr1 20586209 20586221 -261607443 - L1ME2 LINE L1 -4965 1154 1143 711 263 31 8 chr1 20586242 20586497 -261607167 - L1ME2 LINE L1 -4962 1157 897 1211 242 134 40 chr1 20586497 20586591 -261607073 - L2 LINE L2 -1548 1766 1682 2741 110 3 0 chr1 20586591 20586964 -261606700 - THE1C LTR MaLR -1 374 1 1211 242 134 40 chr1 20586964 20587348 -261606316 - L2 LINE L2 -1632 1682 1243 1391 94 0 0 chr1 20587386 20587556 -261606108 + AluSq SINE Alu 2 171 -142 437 153 0 0 chr1 20587556 20587645 -261606019 + AluS SINE Alu 223 311 0 322 290 164 45 chr1 20587760 20588157 -261605507 + L2 LINE L2 2827 3270 -2 3320 172 72 61 chr1 20588706 20589305 -261604359 + L1MB7 LINE L1 5295 5907 -277 2563 125 28 39 chr1 20589305 20589736 -261603928 + MSTB LTR MaLR 1 426 0 3320 172 72 61 chr1 20589736 20589986 -261603678 + L1MB7 LINE L1 5907 6153 -31 2339 100 7 0 chr1 20590111 20590410 -261603254 - AluSx SINE Alu -11 301 1 213 240 0 0 chr1 20590424 20590474 -261603190 + A-rich Low_complexity Low_complexity 1 50 0 260 255 92 20 chr1 20590474 20590572 -261603092 + MIR SINE MIR 137 241 -21 420 232 286 69 chr1 20590572 20590921 -261602743 + LTR16C LTR ERVL 1 425 -66 370 106 16 0 chr1 20590938 20590999 -261602665 - AluSq/x SINE Alu -191 111 66 2020 136 0 0 chr1 20591315 20591595 -261602069 + AluJb SINE Alu 1 280 -32 213 39 0 0 chr1 20591597 20591623 -261602041 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1862 152 12 24 chr1 20591654 20591983 -261601681 - MER44D DNA MER2_type -8 601 7 585 234 123 18 chr1 20591989 20592160 -261601504 - MIR SINE MIR -27 235 47 198 167 0 0 chr1 20592547 20592583 -261601081 + CT-rich Low_complexity Low_complexity 2 37 0 2014 137 3 37 chr1 20592585 20592906 -261600758 - AluSx SINE Alu -2 310 1 214 357 0 0 chr1 20593091 20593147 -261600517 - L2 LINE L2 -12 3260 3205 755 275 90 5 chr1 20593256 20593478 -261600186 - MIR SINE MIR -1 261 21 273 261 65 11 chr1 20593585 20593677 -261599987 - L2 LINE L2 -243 3029 2933 666 174 0 0 chr1 20593989 20594110 -261599554 + FLAM_A SINE Alu 22 142 0 539 234 7 35 chr1 20594241 20594382 -261599282 + MIR SINE MIR 47 183 -79 805 240 132 36 chr1 20594394 20594441 -261599223 + MER113 DNA MER1_type? 24 65 -456 1491 184 20 65 chr1 20594441 20594653 -261599011 - MER58B DNA MER1_type -2079 341 121 1755 194 3 0 chr1 20594653 20594946 -261598718 - AluJo SINE Alu -18 294 1 1491 184 20 65 chr1 20594946 20595006 -261598658 - MER58B DNA MER1_type -2299 121 86 2308 109 0 0 chr1 20595006 20595299 -261598365 - AluSc SINE Alu -16 293 1 1491 184 20 65 chr1 20595299 20595378 -261598286 - MER58B DNA MER1_type -2334 86 5 805 240 132 36 chr1 20595378 20595506 -261598158 + MER113 DNA MER1_type? 65 179 -342 2374 92 0 0 chr1 20595506 20595799 -261597865 + AluSx SINE Alu 1 293 -19 805 240 132 36 chr1 20595799 20596038 -261597626 + MER113 DNA MER1_type? 179 479 -42 254 198 5 95 chr1 20596559 20596669 -261596995 + MIR SINE MIR 112 205 -3 239 321 60 0 chr1 20596740 20596824 -261596840 + MER102b DNA MER1_type 1 89 -252 1936 169 10 0 chr1 20597005 20597300 -261596364 - AluJo SINE Alu -14 298 1 24 0 0 0 chr1 20597305 20597329 -261596335 + AT_rich Low_complexity Low_complexity 1 24 0 2253 225 96 20 chr1 20597404 20598017 -261595647 - MER21B LTR ERV1 -111 752 93 26 0 0 0 chr1 20598075 20598101 -261595563 + AT_rich Low_complexity Low_complexity 1 26 0 354 186 0 147 chr1 20598110 20598239 -261595425 + MER102b DNA MER1_type 232 341 0 2052 122 148 16 chr1 20598305 20598683 -261594981 - MSTA LTR MaLR 0 428 1 341 254 15 181 chr1 20598691 20598791 -261594873 - MIR3 SINE MIR -3 259 227 2523 59 0 40 chr1 20598791 20599114 -261594550 + AluY SINE Alu 1 310 -1 341 254 15 181 chr1 20599114 20599273 -261594391 - MIR3 SINE MIR -35 227 43 340 314 38 0 chr1 20599394 20599499 -261594165 + MIR SINE MIR 88 196 -66 223 218 36 0 chr1 20599601 20599656 -261594008 + L2 LINE L2 3005 3061 -211 444 181 35 0 chr1 20599789 20599881 -261593783 - MIR SINE MIR -61 147 98 417 291 179 0 chr1 20600002 20600198 -261593466 + MIR SINE MIR 32 262 0 283 279 36 9 chr1 20600454 20600565 -261593099 + MIR SINE MIR 120 233 -29 267 243 6 0 chr1 20600830 20600901 -261592763 - L1ME LINE L1 -367 5803 5731 338 331 37 0 chr1 20601590 20601726 -261591938 + MIR SINE MIR 89 229 -33 444 228 79 24 chr1 20602013 20602140 -261591524 - MIR SINE MIR -21 241 108 1840 121 26 0 chr1 20602189 20602454 -261591210 + AluSx SINE Alu 1 272 -40 183 42 0 0 chr1 20602466 20602490 -261591174 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1746 236 87 45 chr1 20602791 20603457 -261590207 + L1ME3 LINE L1 5448 6141 -21 429 279 49 8 chr1 20603808 20603930 -261589734 + MIR3 SINE MIR 15 141 -67 214 273 0 18 chr1 20604138 20604193 -261589471 + MIR SINE MIR 208 261 -1 622 278 51 17 chr1 20604197 20604373 -261589291 - MIR SINE MIR -21 241 60 352 247 31 80 chr1 20605109 20605208 -261588456 - MIR SINE MIR -1 261 159 1973 144 7 23 chr1 20605208 20605514 -261588150 - AluJo SINE Alu -11 301 1 1524 157 68 25 chr1 20605519 20605799 -261587865 - AluSx SINE Alu -20 292 1 352 247 31 80 chr1 20605799 20605855 -261587809 - MIR SINE MIR -107 155 108 1144 189 183 6 chr1 20605894 20606206 -261587458 + L1MB8 LINE L1 5812 6178 0 311 241 54 62 chr1 20606293 20606405 -261587259 - L2 LINE L2 0 3313 3203 277 190 47 36 chr1 20606699 20606803 -261586861 - MIR SINE MIR -60 202 97 305 317 49 16 chr1 20607152 20607275 -261586389 + MIR3 SINE MIR 35 161 -47 393 194 130 74 chr1 20607333 20607441 -261586223 - MER81 DNA DNA 0 114 1 1518 199 87 22 chr1 20607941 20608313 -261585351 - Charlie4a DNA MER1_type -1459 502 95 2162 107 0 14 chr1 20608313 20608629 -261585035 + AluSp SINE Alu 1 313 0 1518 199 87 22 chr1 20608629 20608704 -261584960 - Charlie4a DNA MER1_type -1866 95 26 181 203 156 0 chr1 20609060 20609124 -261584540 - L2 LINE L2 -86 3227 3154 251 145 129 81 chr1 20609337 20609399 -261584265 + MIR SINE MIR 88 152 -110 234 0 0 0 chr1 20609499 20609525 -261584139 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 27 0 0 0 chr1 20610385 20610412 -261583252 + GC_rich Low_complexity Low_complexity 1 27 0 26 74 0 0 chr1 20610671 20610725 -261582939 + GC_rich Low_complexity Low_complexity 1 54 0 237 128 0 0 chr1 20610847 20610894 -261582770 + (CGG)n Simple_repeat Simple_repeat 2 48 0 554 266 54 49 chr1 20611704 20611907 -261581757 - MIR SINE MIR -42 220 17 196 261 207 0 chr1 20612700 20612811 -261580853 + MIR SINE MIR 50 183 -79 225 235 0 59 chr1 20613487 20613555 -261580109 + MIR3 SINE MIR 96 159 -49 238 255 0 0 chr1 20613820 20613871 -261579793 + MIR3 SINE MIR 151 201 -7 1397 235 37 10 chr1 20614238 20614646 -261579018 - L1MB8 LINE L1 -2 6176 5758 514 267 20 7 chr1 20615015 20615165 -261578499 + MIR3 SINE MIR 16 167 -41 225 0 0 0 chr1 20615802 20615827 -261577837 + (C)n Simple_repeat Simple_repeat 1 25 0 214 318 76 0 chr1 20616452 20616518 -261577146 - MIR3 SINE MIR -29 179 109 364 223 61 95 chr1 20617013 20617161 -261576503 + MIR SINE MIR 50 192 -70 219 239 0 0 chr1 20617763 20617830 -261575834 + (CA)n Simple_repeat Simple_repeat 1 67 0 272 309 87 53 chr1 20618155 20618362 -261575302 + L2 LINE L2 3046 3259 -13 364 184 40 0 chr1 20618574 20618650 -261575014 + MIR SINE MIR 74 152 -110 244 341 15 68 chr1 20619256 20619388 -261574276 + MIR SINE MIR 88 212 -50 373 252 134 35 chr1 20619430 20619630 -261574034 - MIR SINE MIR -12 250 33 230 309 20 81 chr1 20620013 20620162 -261573502 + MIR3 SINE MIR 4 143 -65 213 239 28 42 chr1 20620602 20620673 -261572991 + L2 LINE L2 3244 3313 0 632 251 35 66 chr1 20620680 20620866 -261572798 - MIR SINE MIR -10 252 73 2234 97 0 13 chr1 20620866 20621177 -261572487 + AluSg SINE Alu 1 307 -3 632 251 35 66 chr1 20621177 20621217 -261572447 - MIR SINE MIR -189 73 33 356 307 44 9 chr1 20621262 20621376 -261572288 + MIR SINE MIR 95 212 -50 339 262 35 5 chr1 20621615 20621731 -261571933 + MIR SINE MIR 33 153 -68 457 328 82 11 chr1 20622350 20622533 -261571131 - L2 LINE L2 -151 3121 2926 246 343 0 9 chr1 20622632 20622737 -261570927 + CT-rich Low_complexity Low_complexity 4 107 0 372 257 129 0 chr1 20623437 20623538 -261570126 - MIR SINE MIR -65 143 30 1579 168 0 43 chr1 20624195 20624498 -261569166 - AluJo SINE Alu -22 290 1 1256 115 0 0 chr1 20624574 20624756 -261568908 + AluSg/x SINE Alu 131 312 0 361 220 199 28 chr1 20624978 20625119 -261568545 + MIR SINE MIR 47 211 -51 263 391 19 26 chr1 20625746 20625902 -261567762 - MIR3 SINE MIR -37 171 17 424 312 58 24 chr1 20626369 20626574 -261567090 - MIR SINE MIR -20 242 31 600 146 0 0 chr1 20626949 20627052 -261566612 + (TCCA)n Simple_repeat Simple_repeat 2 104 0 426 268 134 38 chr1 20627156 20627313 -261566351 - MIR3 SINE MIR -21 187 16 287 328 181 29 chr1 20627610 20627848 -261565816 - L3b LINE CR1 -27 1556 1283 393 240 72 56 chr1 20628062 20628187 -261565477 - MIR3 SINE MIR -21 187 61 271 241 12 36 chr1 20628926 20629009 -261564655 - MIR SINE MIR -87 121 41 215 292 62 0 chr1 20629041 20629106 -261564558 - L2 LINE L2 -2 3311 3243 556 246 42 30 chr1 20629304 20629471 -261564193 - MIR SINE MIR -64 198 30 339 231 0 0 chr1 20629860 20629925 -261563739 + MIR SINE MIR 83 147 -61 259 284 0 6 chr1 20630492 20630565 -261563099 + MIR SINE MIR 69 140 -68 306 224 229 23 chr1 20630657 20630813 -261562851 - MIR3 SINE MIR -59 149 7 351 331 53 103 chr1 20631471 20631576 -261562088 - L2 LINE L2 -5 3267 3158 1803 134 26 54 chr1 20631576 20631889 -261561775 + AluJo SINE Alu 1 304 -8 351 331 53 103 chr1 20631889 20632161 -261561503 - L2 LINE L2 -114 3158 2909 472 316 53 18 chr1 20632769 20632997 -261560667 + L1ME4a LINE L1 5849 6084 -37 1710 128 40 75 chr1 20633111 20633211 -261560453 + L1MB3 LINE L1 5799 5901 -282 2063 123 6 22 chr1 20633211 20633528 -261560136 + AluJb SINE Alu 1 312 0 1710 128 40 75 chr1 20633528 20633802 -261559862 + L1MB3 LINE L1 5901 6160 -23 1928 105 59 0 chr1 20633804 20634090 -261559574 - AluJb SINE Alu -9 303 1 192 246 169 15 chr1 20634475 20634540 -261559124 + L2 LINE L2 3188 3262 -10 206 359 26 0 chr1 20634639 20634717 -261558947 - L2 LINE L2 -7 3265 3186 661 288 79 5 chr1 20634918 20635137 -261558527 - MIR SINE MIR 0 262 29 191 326 62 54 chr1 20635405 20635534 -261558130 - MIR SINE MIR -123 139 10 204 319 255 21 chr1 20635831 20635972 -261557692 + MIR SINE MIR 86 259 -3 205 247 41 41 chr1 20636061 20636134 -261557530 - L2 LINE L2 -173 3099 3027 1936 154 0 3 chr1 20636395 20636694 -261556970 - AluJo SINE Alu -14 298 1 198 342 44 26 chr1 20637189 20637303 -261556361 + MIR SINE MIR 6 121 -141 553 290 129 13 chr1 20637343 20637567 -261556097 - MIR SINE MIR -11 251 2 458 292 22 0 chr1 20637684 20637821 -261555843 - MIR3 SINE MIR -26 182 43 301 326 42 0 chr1 20638294 20638389 -261555275 - MIR SINE MIR -47 215 117 215 245 0 0 chr1 20638502 20638551 -261555113 + L2 LINE L2 3224 3272 0 512 291 0 8 chr1 20638788 20638915 -261554749 - MIR SINE MIR -64 144 19 554 250 70 17 chr1 20641375 20641547 -261552117 + MIR SINE MIR 64 244 -18 640 199 6 6 chr1 20641568 20641739 -261551925 + (CACCAT)n Simple_repeat Simple_repeat 1 171 0 * 689 212 6 0 chr1 20641706 20641885 -261551779 + (CAT)n Simple_repeat Simple_repeat 1 180 0 215 308 0 0 chr1 20642007 20642059 -261551605 + L2 LINE L2 3213 3264 -8 542 244 100 14 chr1 20642835 20643033 -261550631 - MIR SINE MIR -36 226 15 425 221 58 0 chr1 20643140 20643244 -261550420 + LTR67 LTR ERVL 113 222 -335 195 320 112 0 chr1 20643864 20643966 -261549698 + MIR SINE MIR 96 219 -43 675 226 27 38 chr1 20644002 20644024 -261549640 - MIR SINE MIR -71 191 170 2222 99 0 7 chr1 20644024 20644342 -261549322 - AluSx SINE Alu 0 312 1 675 226 27 38 chr1 20644342 20644505 -261549159 - MIR SINE MIR -92 170 8 502 217 196 0 chr1 20644641 20644784 -261548880 - MER58C DNA MER1_type 0 215 45 305 265 118 0 chr1 20645012 20645114 -261548550 + MIR SINE MIR 117 230 -32 220 215 139 13 chr1 20645224 20645303 -261548361 + MIR3 SINE MIR 87 175 -33 319 278 167 16 chr1 20645817 20645974 -261547690 - MIR SINE MIR -67 141 3 432 264 50 0 chr1 20646042 20646163 -261547501 - L3 LINE CR1 -107 1470 1344 355 245 9 28 chr1 20646800 20646906 -261546758 + MER53 DNA DNA 1 104 -85 216 266 101 13 chr1 20647135 20647214 -261546450 + MIR SINE MIR 89 174 -88 450 276 17 0 chr1 20647926 20648042 -261545622 + MIR SINE MIR 40 157 -105 2121 135 0 3 chr1 20649553 20649864 -261543800 - AluSx SINE Alu -2 310 1 218 108 27 0 chr1 20649982 20650019 -261543645 - MIR SINE MIR -145 117 80 410 329 82 6 chr1 20650325 20650495 -261543169 + MIR SINE MIR 28 210 -52 372 307 234 13 chr1 20651121 20651518 -261542146 - L2 LINE L2 -2 3311 2827 276 294 78 10 chr1 20652028 20652130 -261541534 + L2 LINE L2 3204 3312 -1 205 398 29 10 chr1 20652179 20652282 -261541382 + MIR SINE MIR 86 190 -72 212 314 117 7 chr1 20653598 20653735 -261539929 - MIR SINE MIR -65 197 46 506 291 62 11 chr1 20656698 20656877 -261536787 + MIR SINE MIR 67 254 -8 2130 98 3 0 chr1 20657775 20658061 -261535603 + AluSq SINE Alu 1 287 -26 285 51 0 0 chr1 20658061 20658100 -261535564 + (CAAAC)n Simple_repeat Simple_repeat 2 40 0 370 239 18 62 chr1 20662242 20662355 -261531309 - MIR3 SINE MIR -86 122 15 668 251 59 14 chr1 20662556 20662768 -261530896 - MIR SINE MIR -28 234 19 1613 147 82 25 chr1 20663863 20664142 -261529522 - AluJo SINE Alu -17 295 1 186 43 0 0 chr1 20665422 20665445 -261528219 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 339 226 118 11 chr1 20665470 20665563 -261528101 + MIR SINE MIR 58 160 -102 2345 98 0 0 chr1 20665563 20665858 -261527806 + AluSq SINE Alu 1 295 -18 186 43 0 0 chr1 20666661 20666684 -261526980 + (TGGGGG)n Simple_repeat Simple_repeat 2 24 0 264 206 196 22 chr1 20667733 20667825 -261525839 + MIR SINE MIR 2 109 -153 482 213 57 8 chr1 20668709 20668831 -261524833 + MIR SINE MIR 66 193 -69 273 242 242 16 chr1 20669477 20669605 -261524059 + MIR SINE MIR 63 219 -43 203 184 0 0 chr1 20670303 20670341 -261523323 - L2 LINE L2 -86 3227 3190 361 348 133 11 chr1 20670367 20670720 -261522944 + L2 LINE L2 2339 2734 -580 190 314 59 39 chr1 20670765 20670867 -261522797 + L2 LINE L2 2856 2959 -313 2321 105 0 3 chr1 20671136 20671440 -261522224 + AluSq SINE Alu 1 303 -10 1944 163 42 15 chr1 20671790 20672665 -261520999 + L1MD1 LINE L1 5274 6242 0 198 313 136 20 chr1 20673850 20673997 -261519667 + L2 LINE L2 2705 2868 -446 356 259 63 81 chr1 20674821 20674995 -261518669 + MIR3 SINE MIR 33 203 -5 220 227 0 0 chr1 20675455 20675499 -261518165 + (TATG)n Simple_repeat Simple_repeat 4 47 0 249 220 0 20 chr1 20677873 20677923 -261515741 - L2 LINE L2 -8 3305 3257 204 263 195 51 chr1 20678332 20678450 -261515214 - MIR SINE MIR -105 157 23 308 250 36 36 chr1 20679234 20679346 -261514318 + GA-rich Low_complexity Low_complexity 4 115 0 356 246 141 75 chr1 20680451 20680650 -261513014 - MIR SINE MIR -4 258 47 309 288 192 0 chr1 20682182 20682307 -261511357 + L2 LINE L2 3107 3255 -17 1352 181 26 0 chr1 20682471 20682697 -261510967 + AluJb SINE Alu 65 296 -16 650 322 97 11 chr1 20683218 20683578 -261510086 + L1MEd LINE L1 443 833 -5286 2273 87 3 3 chr1 20683621 20683909 -261509755 + AluSp SINE Alu 16 303 -10 270 256 67 0 chr1 20684070 20684160 -261509504 + L1MEd LINE L1 1012 1107 -5024 211 184 0 0 chr1 20685870 20685908 -261507756 + (CCA)n Simple_repeat Simple_repeat 1 38 0 2500 200 93 12 chr1 20687697 20687822 -261505842 - Charlie1a DNA MER1_type -1306 1455 1342 1944 162 0 13 chr1 20687822 20688130 -261505534 + AluJb SINE Alu 1 304 -8 2500 200 93 12 chr1 20688130 20688648 -261505016 - Charlie1a DNA MER1_type -1419 1342 760 1766 237 133 6 chr1 20688619 20689151 -261504513 - Charlie1a DNA MER1_type -855 600 1 * 221 351 22 52 chr1 20689662 20689796 -261503868 - L2 LINE L2 0 3272 3143 759 279 104 0 chr1 20689864 20690086 -261503578 - MIR SINE MIR -4 258 14 205 354 24 0 chr1 20690094 20690176 -261503488 - L2 LINE L2 -324 2948 2865 496 230 55 25 chr1 20691619 20691819 -261501845 + L2 LINE L2 2750 2955 -359 1076 176 25 25 chr1 20691876 20691939 -261501725 - AluSx SINE Alu -113 199 137 2367 99 10 0 chr1 20691939 20692243 -261501421 - AluSp SINE Alu -6 307 1 1076 176 25 25 chr1 20692243 20692378 -261501286 - AluSx SINE Alu -174 138 1 355 308 63 14 chr1 20692378 20692521 -261501143 - MIR SINE MIR -111 151 2 601 253 167 0 chr1 20693275 20693449 -261500215 - MIR SINE MIR -50 212 10 320 270 82 99 chr1 20694469 20694714 -261498950 - MIR SINE MIR -12 250 11 225 108 0 0 chr1 20695517 20695554 -261498110 + (CA)n Simple_repeat Simple_repeat 1 37 0 878 226 116 0 chr1 20696444 20696643 -261497021 - MIR SINE MIR 0 262 41 878 150 0 29 chr1 20697845 20697985 -261495679 - AluJb SINE Alu -176 136 1 357 179 179 0 chr1 20698507 20698585 -261495079 + L1MB8 LINE L1 6081 6172 -6 1502 114 0 23 chr1 20698742 20698962 -261494702 - AluJo SINE Alu -11 301 87 193 312 57 50 chr1 20699000 20699141 -261494523 - L2 LINE L2 -8 3305 3164 239 175 0 0 chr1 20700871 20700911 -261492753 + tRNA-Gly-GGA tRNA tRNA 2 41 -34 425 231 157 8 chr1 20702105 20702226 -261491438 + L2 LINE L2 3175 3313 0 2244 112 3 3 chr1 20703493 20703796 -261489868 + AluSx SINE Alu 1 303 -9 668 168 140 11 chr1 20704161 20704340 -261489324 + LTR50 LTR ERVL 8 209 -586 282 233 14 0 chr1 20704454 20704527 -261489137 + LTR50 LTR ERVL 611 684 -111 611 323 19 49 chr1 20706155 20706418 -261487246 - MIR SINE MIR -1 261 7 297 312 36 29 chr1 20708274 20708412 -261485252 + L2 LINE L2 3175 3313 0 350 323 39 15 chr1 20709023 20709153 -261484511 + MIR SINE MIR 16 148 -60 746 225 14 0 chr1 20710384 20710526 -261483138 + AluJo SINE Alu 126 269 -43 1348 182 159 0 chr1 20710599 20710863 -261482801 + AluJo SINE Alu 1 306 -6 1917 164 7 0 chr1 20711234 20711532 -261482132 - AluJo SINE Alu -12 300 1 237 33 0 0 chr1 20711567 20711597 -261482067 + (A)n Simple_repeat Simple_repeat 1 30 0 1156 277 92 70 chr1 20711882 20711917 -261481747 + L1 LINE L1 2746 2779 -3367 2258 113 3 0 chr1 20711917 20712219 -261481445 + AluSp SINE Alu 3 305 -8 1156 277 92 70 chr1 20712219 20712501 -261481163 + L1 LINE L1 2779 3053 -3093 2171 135 0 0 chr1 20712501 20712805 -261480859 - AluSx SINE Alu -8 304 1 1156 277 92 70 chr1 20712805 20713990 -261479674 + L1 LINE L1 3053 4282 -1864 1414 159 78 30 chr1 20713991 20714120 -261479544 + AluJo SINE Alu 1 122 -191 2164 135 0 22 chr1 20714120 20714438 -261479226 + AluSx SINE Alu 1 311 -1 1414 159 78 30 chr1 20714438 20714608 -261479056 + AluJo SINE Alu 122 313 0 768 184 127 0 chr1 20714610 20714768 -261478896 + FRAM SINE Alu 1 176 0 1595 263 105 10 chr1 20715264 20715964 -261477700 - L1 LINE L1 -996 5150 4381 833 312 71 20 chr1 20716045 20716607 -261477057 + L1MEc LINE L1 1270 1811 -851 432 320 43 49 chr1 20716686 20717036 -261476628 + L1MEc LINE L1 1963 2310 -4086 1944 138 7 3 chr1 20717340 20717638 -261476026 + AluJb SINE Alu 1 299 -13 180 125 0 0 chr1 20718348 20718380 -261475284 + (TTCTCC)n Simple_repeat Simple_repeat 4 35 0 269 26 26 0 chr1 20719577 20719615 -261474049 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 967 178 128 6 chr1 20722902 20723165 -261470499 + MER33 DNA MER1_type 1 287 -37 1573 104 148 8 chr1 20723165 20723415 -261470249 + AluSg1 SINE Alu 1 285 -24 242 116 23 0 chr1 20723418 20723461 -261470203 + GA-rich Low_complexity Low_complexity 1 44 0 993 122 6 17 chr1 20723464 20723645 -261470019 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 258 305 12 0 chr1 20724852 20724934 -261468730 - L2 LINE L2 -21 3251 3169 315 0 0 0 chr1 20725832 20725867 -261467797 + (CA)n Simple_repeat Simple_repeat 2 36 0 309 250 75 33 chr1 20730126 20730246 -261463418 + L1M4 LINE L1 1443 1567 -4975 867 200 18 30 chr1 20736342 20736507 -261457157 - AluJo SINE Alu -24 288 126 1296 138 0 74 chr1 20738776 20739007 -261454657 - AluJb SINE Alu -19 293 80 600 118 17 84 chr1 20739107 20739226 -261454438 - AluJb SINE Alu -200 112 2 1850 165 0 14 chr1 20739324 20739621 -261454043 + AluSx SINE Alu 1 293 -19 208 305 17 0 chr1 20739736 20739795 -261453869 + L3 LINE CR1 1056 1115 -462 1617 148 21 32 chr1 20740068 20740351 -261453313 - AluJb SINE Alu -13 299 20 944 206 31 0 chr1 20740946 20741140 -261452524 + MER105 DNA DNA 1 200 -4 196 256 0 0 chr1 20741848 20741891 -261451773 + MIR3 SINE MIR 152 194 -14 1648 127 35 92 chr1 20746285 20746600 -261447064 + AluJb SINE Alu 1 297 -15 2503 60 0 3 chr1 20748385 20748685 -261444979 + AluY SINE Alu 1 299 -12 223 294 262 0 chr1 20748788 20748914 -261444750 - MIR SINE MIR -10 252 94 1072 194 0 5 chr1 20749888 20750084 -261443580 + AluJo SINE Alu 84 278 -34 225 196 22 0 chr1 20750086 20750132 -261443532 + GA-rich Low_complexity Low_complexity 5 51 0 414 277 144 20 chr1 20750161 20750356 -261443308 + MIR SINE MIR 31 249 -13 248 221 61 117 chr1 20750793 20750956 -261442708 - MER103 DNA DNA -11 155 2 470 229 46 18 chr1 20750997 20751106 -261442558 + L2 LINE L2 3190 3301 -12 2013 121 14 27 chr1 20751248 20751545 -261442119 + AluSx SINE Alu 1 293 -19 578 232 89 12 chr1 20751631 20751799 -261441865 - Charlie8 DNA MER1_type -2192 225 45 2278 107 0 0 chr1 20751924 20752215 -261441449 + AluSx SINE Alu 1 291 -21 23 0 0 0 chr1 20752215 20752238 -261441426 + AT_rich Low_complexity Low_complexity 1 23 0 1139 175 57 24 chr1 20754813 20755024 -261438640 - MER20 DNA MER1_type -1 218 1 1754 158 36 16 chr1 20755471 20755775 -261437889 - AluJb SINE Alu -2 310 1 2078 119 3 20 chr1 20755779 20756082 -261437582 - AluSx SINE Alu -14 298 1 21 0 0 0 chr1 20756084 20756105 -261437559 + AT_rich Low_complexity Low_complexity 1 21 0 435 155 42 0 chr1 20757622 20757693 -261435971 + AluJ/FLAM SINE Alu 1 74 -238 21 0 0 0 chr1 20759615 20759636 -261434028 + AT_rich Low_complexity Low_complexity 1 21 0 1884 124 0 0 chr1 20759869 20760128 -261433536 - AluSx SINE Alu -5 307 49 209 340 113 43 chr1 20760690 20760785 -261432879 + L2 LINE L2 2251 2338 -976 688 211 151 91 chr1 20760785 20761070 -261432594 + AluJo SINE Alu 1 302 0 209 340 113 43 chr1 20761070 20761303 -261432361 + L2 LINE L2 2338 2602 -712 * 414 194 0 0 chr1 20761301 20761368 -261432296 + L2 LINE L2 3246 3312 -1 3382 138 42 11 chr1 20761470 20762043 -261431621 - L1MB3 LINE L1 0 6183 5593 1132 136 6 6 chr1 20762032 20762194 -261431470 - FAM SINE Alu -14 171 10 1009 153 46 25 chr1 20762194 20762390 -261431274 - L1MB3 LINE L1 -564 5619 5420 331 278 13 85 chr1 20762391 20762565 -261431099 + L1ME1 LINE L1 5786 5949 -213 183 156 0 0 chr1 20762590 20762622 -261431042 + (CATATA)n Simple_repeat Simple_repeat 5 36 0 346 223 45 27 chr1 20762811 20762923 -261430741 - L1P5 LINE L1 -725 5431 5318 2455 83 0 0 chr1 20763127 20763428 -261430236 + AluSx SINE Alu 1 301 -11 375 325 30 0 chr1 20764419 20764585 -261429079 - MIR SINE MIR -21 241 71 284 269 0 0 chr1 20765072 20765151 -261428513 + L1ME1 LINE L1 6052 6289 -44 2171 92 30 16 chr1 20765249 20765553 -261428111 - AluSg SINE Alu -2 308 1 299 24 0 24 chr1 20766760 20766801 -261426863 + (TA)n Simple_repeat Simple_repeat 1 40 0 354 151 7 26 chr1 20767464 20767754 -261425910 + AluJo SINE Alu 1 334 0 1761 197 0 0 chr1 20767955 20768259 -261425405 + AluJb SINE Alu 1 304 -8 703 267 102 68 chr1 20768314 20768369 -261425295 + L1ME LINE L1 5255 5307 -814 1794 175 6 19 chr1 20768369 20768684 -261424980 + AluJo SINE Alu 1 311 -1 703 267 102 68 chr1 20768684 20769170 -261424494 + L1ME LINE L1 5307 5819 -302 378 257 143 7 chr1 20769249 20769389 -261424275 + HAL1b LINE L1 1187 1345 -3 276 331 81 75 chr1 20769516 20769688 -261423976 + L2 LINE L2 2953 3129 -143 2031 139 3 23 chr1 20769688 20769997 -261423667 + AluSx SINE Alu 1 303 -9 276 331 81 75 chr1 20769997 20770132 -261423532 + L2 LINE L2 3129 3262 -10 1256 276 141 35 chr1 20770137 20770871 -261422793 + L2 LINE L2 2247 3110 -203 2186 125 0 3 chr1 20770871 20771175 -261422489 + AluSx SINE Alu 1 303 -9 1256 276 141 35 chr1 20771175 20771381 -261422283 + L2 LINE L2 3110 3293 -20 247 247 27 14 chr1 20771636 20771709 -261421955 - MIR SINE MIR -111 151 78 213 299 103 17 chr1 20772348 20772465 -261421199 + L2 LINE L2 2965 3091 -222 2181 114 21 0 chr1 20772471 20772760 -261420904 - AluSq SINE Alu -18 295 1 228 174 159 14 chr1 20772821 20772890 -261420774 + L2 LINE L2 3232 3310 -3 1852 171 127 76 chr1 20773371 20774092 -261419572 + L1MC2 LINE L1 5594 6275 -58 817 220 5 27 chr1 20774103 20774289 -261419375 + AluJo SINE Alu 121 302 -10 2202 111 3 0 chr1 20774296 20774585 -261419079 + AluSq SINE Alu 1 290 -23 448 235 0 0 chr1 20774643 20774747 -261418917 + FLAM_A SINE Alu 36 139 0 2227 83 0 17 chr1 20774755 20775072 -261418592 + AluY SINE Alu 1 312 0 29 60 0 0 chr1 20775076 20775126 -261418538 + AT_rich Low_complexity Low_complexity 1 50 0 314 360 35 15 chr1 20775443 20775640 -261418024 + L2 LINE L2 2560 2760 -554 441 0 0 0 chr1 20775746 20775795 -261417869 + (CA)n Simple_repeat Simple_repeat 2 50 0 197 327 101 31 chr1 20776524 20776683 -261416981 + L2 LINE L2 3122 3291 -22 1893 157 7 0 chr1 20777123 20777416 -261416248 + AluJb SINE Alu 1 295 -17 630 325 142 13 chr1 20778826 20779128 -261414536 + MER102b DNA MER1_type 1 341 0 946 198 82 5 chr1 20779152 20779359 -261414305 + MER58A DNA MER1_type 1 223 -1 597 196 184 34 chr1 20779764 20779943 -261413721 - MIR SINE MIR -45 217 12 1339 93 88 19 chr1 20779946 20780161 -261413503 + MER30 DNA MER1_type 1 230 0 766 102 0 169 chr1 20780218 20780384 -261413280 + AluJb SINE Alu 2 139 -173 26 74 0 0 chr1 20780399 20780453 -261413211 + AT_rich Low_complexity Low_complexity 1 54 0 273 56 0 0 chr1 20780556 20780592 -261413072 + MER30B DNA MER1_type 43 78 -112 1780 135 29 11 chr1 20780648 20780922 -261412742 + AluJo SINE Alu 11 289 -23 395 242 86 86 chr1 20781605 20781727 -261411937 - MIR SINE MIR 0 262 138 1782 141 0 0 chr1 20781727 20781976 -261411688 + AluSx SINE Alu 41 289 -23 395 242 86 86 chr1 20781976 20782051 -261411613 - MIR SINE MIR -123 139 65 2162 111 17 0 chr1 20782581 20782878 -261410786 + AluSg1 SINE Alu 1 302 -7 2094 115 3 0 chr1 20783005 20783291 -261410373 + AluSx SINE Alu 11 297 -15 2293 85 3 17 chr1 20783782 20784077 -261409587 - AluSg SINE Alu -19 291 1 31 0 0 0 chr1 20784296 20784327 -261409337 + AT_rich Low_complexity Low_complexity 1 31 0 760 164 0 75 chr1 20785954 20786113 -261407551 + FRAM SINE Alu 1 146 -30 2164 81 27 34 chr1 20786115 20786412 -261407252 - AluSq SINE Alu -18 295 1 2255 121 0 0 chr1 20787123 20787429 -261406235 + AluSx SINE Alu 1 306 -6 1368 182 149 0 chr1 20787481 20787777 -261405887 + MER58B DNA MER1_type 2 341 0 2417 99 0 0 chr1 20787962 20788266 -261405398 + AluY SINE Alu 1 304 -7 1610 139 36 7 chr1 20789269 20789550 -261404114 + MSTB-int LTR MaLR 1349 1637 -14 2382 154 24 14 chr1 20789568 20789990 -261403674 + MSTB LTR MaLR 1 426 0 268 323 0 10 chr1 20790513 20790612 -261403052 + MIR SINE MIR 39 136 -126 207 125 38 188 chr1 20790661 20790741 -261402923 - L2 LINE L2 -19 3294 3227 2013 141 0 13 chr1 20790973 20791279 -261402385 + AluSx SINE Alu 1 302 -10 207 178 67 0 chr1 20792859 20792904 -261400760 + L2 LINE L2 3221 3268 -4 1805 142 16 39 chr1 20793803 20794008 -261399656 + AluSx SINE Alu 1 198 -114 2596 66 0 0 chr1 20794008 20794313 -261399351 + AluY SINE Alu 1 305 -6 1805 142 16 39 chr1 20794313 20794416 -261399248 + AluSx SINE Alu 198 302 -10 2155 118 3 10 chr1 20794789 20795093 -261398571 - AluSg SINE Alu -8 302 1 265 288 0 14 chr1 20795419 20795492 -261398172 - MIR SINE MIR -182 80 9 566 272 118 64 chr1 20796219 20796242 -261397422 - MER102a DNA MER1_type -1087 330 310 1961 125 34 7 chr1 20796242 20796538 -261397126 + AluJb SINE Alu 1 304 -8 566 272 118 64 chr1 20796538 20796827 -261396837 - MER102a DNA MER1_type -1107 310 1 422 350 46 9 chr1 20800215 20800432 -261393232 - MIR SINE MIR -26 236 12 2463 92 0 0 chr1 20801057 20801361 -261392303 - AluSx SINE Alu -8 304 1 2358 87 3 10 chr1 20801371 20801669 -261391995 - AluSq SINE Alu -17 296 1 1967 91 80 0 chr1 20801670 20801945 -261391719 - AluSq SINE Alu -16 297 1 31 0 0 0 chr1 20802164 20802195 -261391469 + AT_rich Low_complexity Low_complexity 1 31 0 235 191 0 44 chr1 20804279 20804347 -261389317 + (CCG)n Simple_repeat Simple_repeat 2 66 0 1368 160 45 45 chr1 20805371 20805659 -261388005 - AluJb SINE Alu -24 288 1 21 36 0 0 chr1 20806079 20806107 -261387557 + AT_rich Low_complexity Low_complexity 1 28 0 375 243 34 40 chr1 20806516 20806664 -261387000 + L1ME3 LINE L1 6015 6161 -1 686 138 26 17 chr1 20807253 20807396 -261386268 + L1MC4 LINE L1 7880 7988 -7 1498 74 5 0 chr1 20808923 20809112 -261384552 + AluSg/x SINE Alu 118 307 -3 2106 135 3 0 chr1 20809119 20809416 -261384248 + AluSx SINE Alu 1 298 -14 1979 132 13 32 chr1 20809779 20810089 -261383575 - AluSx SINE Alu -8 304 1 891 171 26 0 chr1 20810191 20810343 -261383321 + FRAM SINE Alu 1 156 -10 415 87 0 29 chr1 20810577 20810646 -261383018 + L1MA2 LINE L1 6237 6303 -1 2026 128 10 7 chr1 20810792 20811090 -261382574 - AluJo SINE Alu -13 299 1 1749 106 121 11 chr1 20811366 20811630 -261382034 + AluSg SINE Alu 1 293 -17 25 31 0 0 chr1 20812501 20812533 -261381131 + AT_rich Low_complexity Low_complexity 1 32 0 1214 226 42 36 chr1 20814355 20814786 -261378878 + L2 LINE L2 2804 3278 -35 2238 107 0 10 chr1 20815454 20815754 -261377910 + AluSc SINE Alu 1 297 -12 2041 90 23 0 chr1 20815890 20816146 -261377518 + AluSx SINE Alu 6 267 -45 663 131 16 31 chr1 20816278 20816522 -261377142 + AluJb SINE Alu 1 299 -13 508 255 55 12 chr1 20817167 20817379 -261376285 - MIR SINE MIR 0 262 2 290 358 140 0 chr1 20817822 20818001 -261375663 - MIR SINE MIR -12 250 47 2577 258 114 18 chr1 20818031 20819333 -261374331 + L2 LINE L2 1868 3302 -11 1902 161 13 17 chr1 20819335 20819472 -261374192 + AluJo SINE Alu 1 137 -175 2379 93 10 0 chr1 20819472 20819774 -261373890 + AluSc SINE Alu 3 307 -2 1902 161 13 17 chr1 20819774 20819934 -261373730 + AluJo SINE Alu 137 297 -15 517 225 138 0 chr1 20819954 20820114 -261373550 - MIR SINE MIR -21 241 60 687 213 0 0 chr1 20820436 20820577 -261373087 + FLAM_C SINE Alu 2 142 -1 23 0 0 0 chr1 20820633 20820656 -261373008 + AT_rich Low_complexity Low_complexity 1 23 0 1937 135 0 60 chr1 20820656 20820974 -261372690 - AluJb SINE Alu -13 299 1 922 196 45 17 chr1 20820981 20821160 -261372504 + AluJb SINE Alu 129 312 0 677 303 60 4 chr1 20821160 20821394 -261372270 - MIR SINE MIR -1 261 15 1756 124 116 4 chr1 20821685 20821960 -261371704 + AluSx SINE Alu 1 306 -6 2413 97 3 0 chr1 20822024 20822332 -261371332 + AluSp SINE Alu 1 309 -4 501 298 60 0 chr1 20822598 20822766 -261370898 + L1ME3A LINE L1 5991 6168 -2 2226 99 27 0 chr1 20822870 20823162 -261370502 + AluSx SINE Alu 1 300 -12 21 57 0 0 chr1 20823378 20823413 -261370251 + AT_rich Low_complexity Low_complexity 1 35 0 631 230 173 5 chr1 20823854 20824045 -261369619 - MIR SINE MIR -22 240 18 2362 93 0 3 chr1 20824389 20824690 -261368974 + AluSg SINE Alu 1 300 -10 434 266 62 0 chr1 20824692 20824805 -261368859 + L2 LINE L2 3192 3311 -2 2039 131 3 13 chr1 20825725 20826023 -261367641 - AluJb SINE Alu -17 295 1 1990 95 0 0 chr1 20826080 20826323 -261367341 + AluSx SINE Alu 1 243 -69 541 330 73 5 chr1 20827842 20828060 -261365604 + MIR SINE MIR 16 248 -14 248 235 0 59 chr1 20828351 20828419 -261365245 + L2 LINE L2 3209 3272 0 2314 100 0 7 chr1 20828667 20828966 -261364698 + AluSg SINE Alu 3 299 -11 1892 143 14 18 chr1 20829386 20829521 -261364143 + AluJb SINE Alu 1 135 -173 2411 58 3 20 chr1 20829521 20829844 -261363820 + AluY SINE Alu 1 311 0 1892 143 14 18 chr1 20829844 20830017 -261363647 + AluJb SINE Alu 135 308 0 2027 93 68 7 chr1 20830194 20830474 -261363190 + AluSq SINE Alu 1 297 -16 2417 83 3 10 chr1 20830475 20830776 -261362888 + AluSq SINE Alu 1 299 -14 2521 88 0 0 chr1 20830786 20831092 -261362572 + AluSx SINE Alu 1 306 -6 496 347 41 16 chr1 20831707 20831949 -261361715 + MIR SINE MIR 2 249 -13 526 262 134 80 chr1 20835322 20835611 -261358053 + MER102a DNA MER1_type 1 310 -1107 2001 125 34 7 chr1 20835611 20835907 -261357757 - AluJb SINE Alu -8 304 1 526 262 134 80 chr1 20835907 20835930 -261357734 + MER102a DNA MER1_type 310 330 0 281 300 0 12 chr1 20836650 20836730 -261356934 + MIR SINE MIR 2 80 -182 2186 121 3 10 chr1 20837056 20837363 -261356301 + AluSg SINE Alu 1 305 -5 1521 158 29 0 chr1 20838521 20838762 -261354902 - AluJb SINE Alu -21 291 44 2375 81 3 14 chr1 20839256 20839553 -261354111 + AluSp SINE Alu 1 294 -19 2427 89 0 7 chr1 20839724 20840027 -261353637 - AluSq SINE Alu -12 301 1 597 86 97 0 chr1 20840114 20840207 -261353457 + AluJb SINE Alu 192 293 -19 2148 136 3 0 chr1 20840209 20840510 -261353154 + AluSx SINE Alu 1 302 -10 2081 147 10 0 chr1 20840603 20840910 -261352754 + AluSx SINE Alu 3 312 0 1521 212 89 8 chr1 20840934 20841293 -261352371 + MLT1B LTR MaLR 3 390 0 676 206 8 0 chr1 20841312 20841438 -261352226 - FLAM_A SINE Alu -6 127 1 6224 131 59 40 chr1 20841469 20841843 -261351821 + Tigger3b DNA MER2_type 1 366 -2662 2140 130 3 0 chr1 20841843 20842135 -261351529 + AluSx SINE Alu 1 293 -19 6224 131 59 40 chr1 20842135 20842293 -261351371 + Tigger3b DNA MER2_type 366 520 -2508 1912 151 6 41 chr1 20842293 20842515 -261351149 - AluJb SINE Alu -5 307 79 207 0 0 0 chr1 20842515 20842538 -261351126 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2314 82 4 0 chr1 20842539 20842818 -261350846 - AluSc SINE Alu -29 280 1 1912 151 6 41 chr1 20842818 20842911 -261350753 - AluJb SINE Alu -232 80 1 6224 131 59 40 chr1 20842911 20843012 -261350652 + Tigger3b DNA MER2_type 520 618 -2410 646 226 0 0 chr1 20843012 20843136 -261350528 + FLAM_A SINE Alu 1 124 -9 6224 131 59 40 chr1 20843136 20843708 -261349956 + Tigger3b DNA MER2_type 618 1231 0 1791 154 32 0 chr1 20843743 20844022 -261349642 + AluJb SINE Alu 1 288 -24 2569 70 6 6 chr1 20844036 20844348 -261349316 + AluSp SINE Alu 1 312 -1 207 0 0 0 chr1 20844441 20844464 -261349200 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 181 259 37 0 chr1 20844657 20844711 -261348953 - L2 LINE L2 -216 3056 3001 664 255 39 26 chr1 20844723 20844954 -261348710 - MIR SINE MIR 0 262 29 724 177 0 15 chr1 20845302 20845432 -261348232 + MER45A DNA AcHobo 51 178 0 1629 118 61 50 chr1 20846455 20846516 -261347148 - AluJo SINE Alu -29 283 224 2308 95 0 10 chr1 20846516 20846822 -261346842 + AluSx SINE Alu 1 303 -9 1629 118 61 50 chr1 20846822 20847040 -261346624 - AluJo SINE Alu -88 224 1 710 270 93 56 chr1 20847127 20847759 -261345905 - L2 LINE L2 -36 3236 2548 1519 180 3 77 chr1 20848191 20848514 -261345150 + AluJb SINE Alu 1 299 -13 335 333 17 23 chr1 20849125 20849302 -261344362 - MIR SINE MIR -1 261 86 246 183 0 38 chr1 20849313 20849521 -261344143 + AluJo SINE Alu 2 300 -2 2156 129 0 0 chr1 20850334 20850621 -261343043 + AluSx SINE Alu 1 287 -25 416 232 11 11 chr1 20851420 20851515 -261342149 - MER20 DNA MER1_type -124 95 1 191 261 130 0 chr1 20852162 20852231 -261341433 + MIR SINE MIR 92 169 -93 595 179 0 0 chr1 20852313 20852419 -261341245 + AluJb SINE Alu 120 225 -87 2147 127 0 10 chr1 20853081 20853381 -261340283 + AluY SINE Alu 1 297 -14 1180 165 26 10 chr1 20853463 20853657 -261340007 + AluJo SINE Alu 66 262 -50 945 127 0 0 chr1 20854038 20854164 -261339500 - AluJb SINE Alu -186 126 1 1468 186 10 70 chr1 20855325 20855423 -261338241 + AluJo SINE Alu 1 103 -209 2500 61 3 0 chr1 20855423 20855717 -261337947 + AluY SINE Alu 1 295 -16 1468 186 10 70 chr1 20855717 20855930 -261337734 + AluJo SINE Alu 103 293 -19 209 265 96 12 chr1 20855959 20856042 -261337622 + MIR SINE MIR 65 154 -108 1529 202 3 20 chr1 20856620 20856917 -261336747 + AluJb SINE Alu 1 292 -20 1146 191 38 9 chr1 20857672 20857882 -261335782 - AluJo SINE Alu -96 216 1 2431 68 0 3 chr1 20858250 20858543 -261335121 + AluSg1 SINE Alu 10 301 -8 2561 82 0 0 chr1 20858824 20859130 -261334534 - AluY SINE Alu -5 306 1 324 264 22 11 chr1 20859639 20859730 -261333934 + MLT1G1 LTR MaLR 166 257 -338 930 168 13 0 chr1 20859880 20860029 -261333635 - AluJb SINE Alu -161 151 1 2729 192 23 32 chr1 20860038 20860396 -261333268 - L1MB7 LINE L1 0 6184 5824 231 88 0 0 chr1 20860396 20860430 -261333234 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 1564 179 4 11 chr1 20860430 20860703 -261332961 - AluJo SINE Alu -30 282 12 2729 192 23 32 chr1 20860703 20861006 -261332658 - L1MB7 LINE L1 -358 5826 5528 1242 135 36 9 chr1 20861010 20861232 -261332432 + MSTB LTR MaLR 199 426 0 289 323 0 10 chr1 20861757 20861856 -261331808 + MIR SINE MIR 39 136 -126 211 125 38 188 chr1 20861905 20861985 -261331679 - L2 LINE L2 -19 3294 3227 228 289 144 0 chr1 20862093 20862190 -261331474 + MIR SINE MIR 119 229 -33 2107 148 0 3 chr1 20862217 20862527 -261331137 + AluSx SINE Alu 1 309 -3 189 280 140 0 chr1 20863947 20864040 -261329624 - L2 LINE L2 0 3313 3208 216 178 67 0 chr1 20864120 20864165 -261329499 + L2 LINE L2 3221 3268 -4 1837 146 16 39 chr1 20865064 20865269 -261328395 + AluSx SINE Alu 1 198 -114 2622 66 0 0 chr1 20865269 20865574 -261328090 + AluY SINE Alu 1 305 -6 1837 146 16 39 chr1 20865574 20865677 -261327987 + AluSx SINE Alu 198 302 -10 910 144 7 39 chr1 20865737 20865890 -261327774 + AluSg/x SINE Alu 145 292 -18 1703 203 0 0 chr1 20865906 20866206 -261327458 + AluJb SINE Alu 6 305 -7 1853 131 28 21 chr1 20866525 20866816 -261326848 + AluJb SINE Alu 9 301 -11 184 250 16 62 chr1 20867008 20867072 -261326592 - MIR SINE MIR -3 259 199 274 235 0 15 chr1 20868682 20868750 -261324914 + L1MEc LINE L1 1551 1617 -4779 886 158 0 0 chr1 20868772 20868905 -261324759 + FLAM_C SINE Alu 9 141 -2 452 180 0 0 chr1 20868929 20869018 -261324646 + AluJ/FRAM SINE Alu 219 307 -5 1825 183 44 92 chr1 20869019 20869230 -261324434 + L1MEc LINE L1 2181 2400 -3815 2249 107 3 3 chr1 20869230 20869530 -261324134 + AluSp SINE Alu 2 301 -12 1825 183 44 92 chr1 20869530 20869635 -261324029 + L1MEc LINE L1 2400 2508 -3707 1685 186 13 17 chr1 20869635 20869936 -261323728 + AluJo SINE Alu 12 311 -1 1825 183 44 92 chr1 20869936 20870183 -261323481 + L1MEc LINE L1 2508 2765 -3450 2413 78 0 3 chr1 20870183 20870478 -261323186 + AluSg1 SINE Alu 3 296 -13 1825 183 44 92 chr1 20870478 20870620 -261323044 + L1MEc LINE L1 2765 2912 -3303 2161 148 0 0 chr1 20870620 20870924 -261322740 + AluSx SINE Alu 1 304 -8 2255 125 0 6 chr1 20870930 20871243 -261322421 + AluSx SINE Alu 1 311 -1 1825 183 44 92 chr1 20871243 20871319 -261322345 + L1MEc LINE L1 2821 2899 -3316 198 103 0 0 chr1 20871342 20871371 -261322293 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 820 209 84 21 chr1 20871383 20871622 -261322042 + L1MEc LINE L1 2878 3131 -3084 2147 127 3 0 chr1 20871624 20871916 -261321748 - AluSx SINE Alu -14 298 6 1270 206 36 12 chr1 20871923 20872258 -261321406 - L1M4 LINE L1 -843 5303 4961 407 167 0 56 chr1 20872258 20872348 -261321316 - AluJ/FLAM SINE Alu -226 86 2 2134 115 3 19 chr1 20872377 20872690 -261320974 + AluSc SINE Alu 1 308 -1 3880 201 35 28 chr1 20872697 20873051 -261320613 - L1MB7 LINE L1 -5 6179 5829 1545 180 13 27 chr1 20873051 20873351 -261320313 - AluJo SINE Alu -5 307 12 3880 201 35 28 chr1 20873351 20873914 -261319750 - L1MB7 LINE L1 -355 5829 5243 1614 87 18 13 chr1 20873914 20874143 -261319521 - MER30 DNA MER1_type 0 230 1 3880 201 35 28 chr1 20874143 20874339 -261319325 - L1MB7 LINE L1 -941 5243 5050 935 169 34 23 chr1 20874340 20874517 -261319147 - AluSg/x SINE Alu -12 298 120 940 205 61 51 chr1 20874517 20874655 -261319009 - L1MB7 LINE L1 -1102 5044 4909 2473 60 0 0 chr1 20874655 20874970 -261318694 - AluY SINE Alu 0 315 1 940 205 61 51 chr1 20874970 20875123 -261318541 - L1MB7 LINE L1 -1237 4909 4749 1228 113 0 36 chr1 20875126 20875320 -261318344 - AluSg/x SINE Alu 0 312 126 656 198 32 60 chr1 20875320 20875456 -261318208 - L1MB7 LINE L1 -1403 4743 4614 2001 138 10 6 chr1 20875456 20875767 -261317897 + AluSx SINE Alu 1 312 0 656 198 32 60 chr1 20875767 20875847 -261317817 - L1MB7 LINE L1 -1532 4614 4533 * 2178 143 32 5 chr1 20875846 20876225 -261317439 + MSTB-int LTR MaLR 1249 1637 -14 2300 152 24 14 chr1 20876243 20876665 -261316999 + MSTB LTR MaLR 1 426 0 289 323 0 10 chr1 20877188 20877287 -261316377 + MIR SINE MIR 39 136 -126 211 125 38 188 chr1 20877336 20877416 -261316248 - L2 LINE L2 -19 3294 3227 205 309 144 0 chr1 20877524 20877621 -261316043 + MIR SINE MIR 119 229 -33 2058 141 0 13 chr1 20877648 20877954 -261315710 + AluSx SINE Alu 1 302 -10 187 313 146 10 chr1 20879384 20879480 -261314184 - L2 LINE L2 0 3313 3205 216 178 67 0 chr1 20879556 20879601 -261314063 + L2 LINE L2 3221 3268 -4 1854 117 35 17 chr1 20880500 20880816 -261312848 + AluSg SINE Alu 1 310 0 1808 145 14 14 chr1 20881133 20881423 -261312241 + AluJb SINE Alu 9 298 -14 184 250 16 62 chr1 20881607 20881671 -261311993 - MIR SINE MIR -3 259 199 186 171 0 0 chr1 20882369 20882410 -261311254 + GA-rich Low_complexity Low_complexity 3 43 0 289 221 0 15 chr1 20883316 20883384 -261310280 + L1MEc LINE L1 1552 1618 -4778 825 158 0 8 chr1 20883400 20883533 -261310131 + FLAM_C SINE Alu 11 142 -1 423 195 0 0 chr1 20883547 20883634 -261310030 + AluJ/FRAM SINE Alu 219 305 -7 971 219 30 17 chr1 20883635 20883937 -261309727 + L1MEc LINE L1 2181 2486 -3910 1081 237 0 9 chr1 20883959 20884174 -261309490 + AluJo SINE Alu 13 225 -87 1369 208 52 48 chr1 20884201 20884593 -261309071 + L1MEc LINE L1 2433 2830 -3385 2096 134 0 0 chr1 20884593 20884905 -261308759 + AluSx SINE Alu 1 312 0 1369 208 52 48 chr1 20884905 20884973 -261308691 + L1MEc LINE L1 2830 2896 -3319 2418 108 0 6 chr1 20884975 20885309 -261308355 + AluSx SINE Alu 1 332 0 1098 201 60 36 chr1 20885377 20885618 -261308046 + L1MEc LINE L1 2878 3131 -3084 2156 137 3 0 chr1 20885618 20885924 -261307740 - AluSx SINE Alu -5 307 1 1098 201 60 36 chr1 20885924 20886015 -261307649 + L1MEc LINE L1 3131 3218 -2997 729 172 0 0 chr1 20886015 20886149 -261307515 + AluSg/x SINE Alu 177 310 0 1891 220 31 111 chr1 20886149 20886525 -261307139 + L1MEc LINE L1 3227 3631 -2584 2144 126 7 3 chr1 20886525 20886827 -261306837 + AluSx SINE Alu 1 303 -9 1799 163 24 17 chr1 20886833 20887128 -261306536 - AluJo SINE Alu -15 297 1 1891 220 31 111 chr1 20887128 20887673 -261305991 + L1MEc LINE L1 3636 4081 -2134 853 150 15 0 chr1 20887673 20887806 -261305858 + AluJo SINE Alu 1 135 -177 497 183 137 0 chr1 20887808 20887939 -261305725 + L1MEc LINE L1 4067 4215 -2000 1009 150 0 85 chr1 20887941 20888141 -261305523 - AluJb SINE Alu 0 312 130 1287 126 0 0 chr1 20888196 20888371 -261305293 + AluSg/x SINE Alu 136 310 -2 1159 100 5 37 chr1 20888372 20888562 -261305102 - HUERS-P3b LTR ERV1 -5135 2283 2100 * 4595 148 11 19 chr1 20888557 20889732 -261303932 - HUERS-P3b LTR ERV1 -4870 2126 506 952 211 54 5 chr1 20889741 20889945 -261303719 - HUERS-P3b LTR ERV1 -8705 214 1 233 193 18 18 chr1 20889945 20890002 -261303662 - LTR19C LTR ERV1 0 779 723 2507 172 39 79 chr1 20890003 20890319 -261303345 - LTR9 LTR ERV1 0 612 332 2412 109 0 0 chr1 20890319 20890632 -261303032 - AluSq SINE Alu 0 313 1 2507 172 39 79 chr1 20890632 20890936 -261302728 - LTR9 LTR ERV1 -280 332 17 2297 68 4 4 chr1 20891310 20891590 -261302074 - AluSg SINE Alu -12 298 19 1968 175 30 23 chr1 20892041 20892543 -261301121 + MLT2A2 LTR ERVL 1 507 -47 1957 132 14 7 chr1 20892546 20892848 -261300816 - AluSx SINE Alu 0 304 1 230 190 0 86 chr1 20892852 20892910 -261300754 + MLT2C1 LTR ERVL 338 390 -7 2456 67 0 3 chr1 20893254 20893579 -261300085 + AluY SINE Alu 1 324 0 2355 95 0 0 chr1 20893713 20894008 -261299656 - AluSg SINE Alu -15 295 1 303 162 10 50 chr1 20894015 20894114 -261299550 - L1MA8 LINE L1 0 6291 6197 482 271 181 10 chr1 20894352 20894645 -261299019 + MLT1G1 LTR MaLR 94 541 -54 3605 198 59 26 chr1 20894665 20895137 -261298527 - L1MB8 LINE L1 -37 6141 5686 2427 99 0 0 chr1 20895137 20895439 -261298225 - AluSx SINE Alu -10 302 1 3605 198 59 26 chr1 20895439 20895780 -261297884 - L1MB8 LINE L1 -492 5686 5358 2051 142 3 10 chr1 20895780 20896090 -261297574 - AluJb SINE Alu -2 310 3 3605 198 59 26 chr1 20896090 20896788 -261296876 - L1MB8 LINE L1 -820 5358 4569 1869 169 0 7 chr1 20896792 20897088 -261296576 - AluJb SINE Alu -13 299 6 743 201 0 0 chr1 20897252 20897396 -261296268 + AluJb SINE Alu 168 311 -1 1789 164 7 17 chr1 20898754 20899053 -261294611 + AluJo SINE Alu 1 296 -16 821 75 0 0 chr1 20899176 20899282 -261294382 - U6 snRNA snRNA 0 107 2 1559 210 7 10 chr1 20899426 20899731 -261293933 - AluJb SINE Alu 0 312 9 190 219 0 0 chr1 20899855 20899896 -261293768 + MIR SINE MIR 114 154 -108 1697 158 38 31 chr1 20900540 20900832 -261292832 - AluJb SINE Alu -18 294 1 477 285 27 12 chr1 20902747 20902920 -261290744 + MIR SINE MIR 20 205 -57 280 308 73 59 chr1 20902930 20903203 -261290461 - L2 LINE L2 -1 3271 2995 585 209 22 58 chr1 20903737 20903876 -261289788 + AluJo SINE Alu 3 136 -176 2411 103 0 3 chr1 20903893 20904204 -261289460 + AluSx SINE Alu 1 310 -2 1987 120 92 0 chr1 20904516 20904799 -261288865 + AluSx SINE Alu 1 309 -3 346 250 19 19 chr1 20907166 20907270 -261286394 - MIR SINE MIR -33 229 126 197 258 11 0 chr1 20907401 20907494 -261286170 + CT-rich Low_complexity Low_complexity 1 94 0 192 295 126 11 chr1 20908002 20908097 -261285567 + MER5A DNA MER1_type 7 112 -77 237 309 183 0 chr1 20908667 20908793 -261284871 - MIR SINE MIR -34 228 80 211 244 89 33 chr1 20908757 20908847 -261284817 + MIR SINE MIR 90 184 -78 * 184 29 29 29 chr1 20908996 20909030 -261284634 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2125 101 4 4 chr1 20909033 20909309 -261284355 - AluSx SINE Alu -36 276 1 300 91 0 0 chr1 20909809 20909853 -261283811 + (TC)n Simple_repeat Simple_repeat 1 44 0 231 286 170 11 chr1 20909905 20910087 -261283577 + MIR SINE MIR 4 214 -48 369 0 0 0 chr1 20910454 20910495 -261283169 + (TG)n Simple_repeat Simple_repeat 2 42 0 1562 144 39 27 chr1 20910495 20910752 -261282912 - AluJb SINE Alu -22 290 31 1090 182 0 0 chr1 20910767 20910948 -261282716 - AluJb SINE Alu -12 300 120 245 98 24 0 chr1 20910948 20910989 -261282675 + (TTTC)n Simple_repeat Simple_repeat 2 43 0 706 129 0 58 chr1 20911012 20911151 -261282513 - FLAM_C SINE Alu -2 141 11 499 278 20 13 chr1 20911311 20911462 -261282202 - MIR SINE MIR -62 200 49 819 232 10 25 chr1 20912151 20912349 -261281315 - MIR SINE MIR -9 253 59 195 240 20 20 chr1 20912371 20912421 -261281243 - L2 LINE L2 -85 3187 3138 327 255 49 0 chr1 20912499 20912601 -261281063 + MIR SINE MIR 86 192 -70 882 103 0 22 chr1 20912766 20912902 -261280762 + FLAM_C SINE Alu 1 133 0 3102 160 24 55 chr1 20913222 20913722 -261279942 - L1MB7 LINE L1 -9 6175 5661 2002 128 0 3 chr1 20913722 20914004 -261279660 + AluSx SINE Alu 2 282 -30 1948 138 0 17 chr1 20914004 20914301 -261279363 - AluJb SINE Alu -20 292 1 3102 160 24 55 chr1 20914301 20914505 -261279159 - L1MB7 LINE L1 -521 5663 5492 2560 46 13 7 chr1 20914513 20914815 -261278849 - AluY SINE Alu -7 304 1 2243 119 0 0 chr1 20914819 20915113 -261278551 - AluSx SINE Alu -18 294 1 1174 205 76 6 chr1 20915113 20915263 -261278401 - L1MB7 LINE L1 -943 5203 5065 1766 184 6 19 chr1 20915263 20915577 -261278087 - AluJo SINE Alu -5 307 2 1174 205 76 6 chr1 20915577 20915668 -261277996 - L1MB7 LINE L1 -1081 5065 4982 2074 133 0 0 chr1 20915668 20915961 -261277703 - AluSx SINE Alu -13 299 7 1174 205 76 6 chr1 20915961 20916035 -261277629 - L1MB7 LINE L1 -1164 4982 4865 278 270 90 45 chr1 20916052 20916163 -261277501 - L2 LINE L2 -20 3293 3178 1798 158 13 28 chr1 20916962 20917279 -261276385 - AluJo SINE Alu 0 312 1 240 195 0 0 chr1 20917280 20917321 -261276343 - Alu SINE Alu -258 42 2 2154 128 0 3 chr1 20917496 20917808 -261275856 - AluSx SINE Alu -1 311 1 211 246 43 29 chr1 20918000 20918069 -261275595 + MIR SINE MIR 165 234 -28 397 237 31 0 chr1 20919020 20919117 -261274547 + MIR3 SINE MIR 85 184 -24 342 292 6 45 chr1 20919422 20919584 -261274080 - MIR SINE MIR -72 136 17 244 337 21 0 chr1 20919922 20920017 -261273647 - L2 LINE L2 -6 3266 3170 568 254 29 7 chr1 20920146 20920284 -261273380 - MIR SINE MIR -72 190 50 248 233 142 33 chr1 20920789 20920909 -261272755 + MIR3 SINE MIR 13 145 -63 309 149 0 0 chr1 20921590 20921657 -261272007 + (TCCC)n Simple_repeat Simple_repeat 2 68 0 300 335 149 27 chr1 20921674 20921970 -261271694 - L2 LINE L2 -25 3288 2957 449 258 77 45 chr1 20921991 20922214 -261271450 + MIR SINE MIR 17 256 -6 2207 123 0 0 chr1 20923075 20923376 -261270288 + AluSx SINE Alu 1 301 -11 369 295 58 7 chr1 20923712 20923851 -261269813 + MIR SINE MIR 111 256 -6 21 0 0 0 chr1 20924086 20924107 -261269557 + AT_rich Low_complexity Low_complexity 1 21 0 805 136 8 0 chr1 20924107 20924232 -261269432 - FRAM SINE Alu -51 125 1 219 289 311 21 chr1 20924531 20924766 -261268898 - L2 LINE L2 -49 3223 2921 256 344 31 68 chr1 20925024 20925115 -261268549 - MIR SINE MIR -14 248 164 2294 81 7 0 chr1 20925115 20925410 -261268254 - AluSx SINE Alu -15 297 1 256 344 31 68 chr1 20925410 20925481 -261268183 - MIR SINE MIR -98 164 92 301 311 155 36 chr1 20926298 20926517 -261267147 + MIR SINE MIR 14 258 -4 966 125 0 0 chr1 20926588 20926724 -261266940 + AluJ SINE Alu 1 136 -176 1435 119 123 16 chr1 20927311 20927562 -261266102 - AluJb SINE Alu -13 299 22 813 169 30 2 chr1 20927770 20928040 -261265624 + AluJb SINE Alu 1 322 0 186 204 20 41 chr1 20928182 20928231 -261265433 + MIR SINE MIR 213 260 -2 212 234 325 0 chr1 20928256 20928333 -261265331 + L2 LINE L2 3171 3272 0 366 158 40 26 chr1 20928398 20928474 -261265190 + L1MB8 LINE L1 6102 6178 0 2006 131 10 0 chr1 20928645 20928942 -261264722 - AluSx SINE Alu -12 300 1 871 160 69 0 chr1 20929250 20929394 -261264270 + FRAM SINE Alu 2 155 -11 2243 116 0 0 chr1 20929394 20929704 -261263960 + AluSg SINE Alu 1 310 0 1931 141 0 10 chr1 20930177 20930474 -261263190 + AluSx SINE Alu 1 294 -18 889 137 8 0 chr1 20930492 20930623 -261263041 + FLAM_C SINE Alu 1 132 -1 524 305 74 27 chr1 20930767 20931065 -261262599 - L1MCb LINE L1 -5692 353 42 1863 146 100 10 chr1 20931075 20931211 -261262453 + MER31A LTR ERV1 1 123 -362 1766 157 42 0 chr1 20931211 20931497 -261262167 - AluJb SINE Alu -14 298 1 1863 146 100 10 chr1 20931497 20931771 -261261893 + MER31A LTR ERV1 123 448 -37 2103 84 35 0 chr1 20932098 20932382 -261261282 + AluSp SINE Alu 1 294 -19 189 272 25 49 chr1 20934569 20934650 -261259014 - MIR SINE MIR -41 221 143 916 107 0 0 chr1 20934650 20934771 -261258893 + FLAM_C SINE Alu 1 121 -22 240 114 0 44 chr1 20934816 20934861 -261258803 - MIR SINE MIR -63 145 107 195 231 29 106 chr1 20937657 20937761 -261255903 - MIR3 SINE MIR -110 98 3 361 264 21 15 chr1 20938331 20938448 -261255216 - MIR SINE MIR -72 136 21 234 268 59 9 chr1 20939867 20939977 -261253687 - MIR SINE MIR -79 129 12 316 335 55 82 chr1 20940305 20940598 -261253066 + L1ME LINE L1 748 1032 -5038 2222 97 0 52 chr1 20940911 20941241 -261252423 - AluSq SINE Alu 0 313 1 279 369 102 19 chr1 20941248 20941454 -261252210 + L3 LINE CR1 181 403 -1174 445 350 54 27 chr1 20942009 20942269 -261251395 + L3 LINE CR1 801 1067 -510 237 347 0 0 chr1 20942290 20942362 -261251302 + L3 LINE CR1 1021 1092 -485 485 197 172 25 chr1 20942362 20942484 -261251180 - FLAM_A SINE Alu -2 140 1 233 305 24 113 chr1 20942532 20942745 -261250919 + L3 LINE CR1 1153 1346 -231 1825 156 7 10 chr1 20944713 20945015 -261248649 - AluJb SINE Alu -10 302 2 2322 94 0 0 chr1 20945081 20945378 -261248286 - AluSg SINE Alu -10 300 4 1280 190 20 63 chr1 20945389 20945689 -261247975 - AluJo SINE Alu 0 312 26 278 325 32 16 chr1 20945716 20945839 -261247825 - MIR3 SINE MIR -83 125 1 255 243 189 61 chr1 20947677 20947825 -261245839 + L2 LINE L2 2579 2745 -569 374 255 41 0 chr1 20948203 20948301 -261245363 + MIR SINE MIR 48 149 -113 2403 80 0 3 chr1 20949312 20949613 -261244051 + AluSx SINE Alu 1 300 -12 375 226 212 14 chr1 20950179 20950325 -261243339 - MER5A DNA MER1_type -6 183 9 184 216 0 0 chr1 20950610 20950647 -261243017 + L3 LINE CR1 520 556 -1021 2088 109 0 20 chr1 20950962 20951265 -261242399 - AluSx SINE Alu -15 297 1 239 281 39 26 chr1 20951855 20951955 -261241709 + MIR SINE MIR 30 131 -77 2137 129 7 0 chr1 20952236 20952538 -261241126 - AluSx SINE Alu -8 304 1 237 221 15 134 chr1 20953204 20953384 -261240280 + L1MD3 LINE L1 7891 7995 0 432 290 152 38 chr1 20955022 20955298 -261238366 - L1ME4a LINE L1 -69 6052 5746 310 75 38 0 chr1 20956286 20956339 -261237325 - Alu SINE Alu -2 298 244 1773 128 57 4 chr1 20956339 20956620 -261237044 - AluSg SINE Alu -14 296 1 706 154 98 0 chr1 20956651 20956774 -261236890 + FLAM_C SINE Alu 3 137 -6 1307 143 0 63 chr1 20957184 20957421 -261236243 - AluJo SINE Alu -14 298 77 301 306 0 24 chr1 20958305 20958390 -261235274 + MIR3 SINE MIR 125 207 -1 825 318 157 36 chr1 20958433 20958935 -261234729 - L3 LINE CR1 -89 1488 879 2013 152 10 0 chr1 20958935 20959244 -261234420 - AluJo SINE Alu 0 312 1 825 318 157 36 chr1 20959244 20959429 -261234235 - L3 LINE CR1 -698 879 718 2361 87 0 10 chr1 20959649 20959961 -261233703 + AluSp SINE Alu 1 309 -4 868 126 8 8 chr1 20960265 20960384 -261233280 + FLAM_C SINE Alu 1 122 -180 246 32 0 0 chr1 20960384 20960415 -261233249 + (TA)n Simple_repeat Simple_repeat 2 32 0 2145 131 3 0 chr1 20960507 20960819 -261232845 + AluSq SINE Alu 1 313 0 184 321 38 0 chr1 20961395 20961448 -261232216 + MIR SINE MIR 205 259 -3 398 291 50 7 chr1 20962188 20962329 -261231335 - MIR SINE MIR -114 148 2 843 94 0 107 chr1 20962462 20962611 -261231053 + FLAM_C SINE Alu 1 133 0 896 184 12 12 chr1 20962764 20962927 -261230737 - FRAM SINE Alu 0 166 4 1733 236 75 2 chr1 20964365 20964883 -261228781 - MER68 LTR ERV1 0 562 7 301 351 180 4 chr1 20964916 20965155 -261228509 + L2 LINE L2 3027 3307 -6 268 342 26 0 chr1 20965572 20965686 -261227978 - MIR SINE MIR -118 144 28 1483 158 18 49 chr1 20967775 20968060 -261225604 - AluJo SINE Alu 0 312 37 301 243 116 46 chr1 20969829 20969988 -261223676 + MIR SINE MIR 18 191 -65 332 384 41 0 chr1 20970788 20970934 -261222730 + L2 LINE L2 3162 3313 0 535 245 77 13 chr1 20970941 20971096 -261222568 + MIR SINE MIR 28 192 -70 400 306 46 20 chr1 20971415 20971588 -261222076 + MIR SINE MIR 34 211 -51 455 181 105 23 chr1 20971636 20971769 -261221895 + MER58C DNA MER1_type 67 210 -5 343 285 185 20 chr1 20972119 20972326 -261221338 + MIR SINE MIR 9 241 -21 490 313 52 13 chr1 20972922 20973152 -261220512 + MIR SINE MIR 21 259 -3 2350 119 0 0 chr1 20973188 20973500 -261220164 - AluSx SINE Alu 0 312 1 756 239 12 6 chr1 20974686 20974853 -261218811 + MER3 DNA MER1_type 5 125 -84 305 260 19 29 chr1 20974858 20974962 -261218702 + L2 LINE L2 3191 3293 -20 2320 103 0 3 chr1 20974989 20975291 -261218373 + AluSg SINE Alu 1 301 -9 345 200 31 0 chr1 20975686 20975751 -261217913 - AluJ/FRAM SINE Alu -15 287 221 1005 83 0 8 chr1 20975786 20975918 -261217746 - AluSg/x SINE Alu -4 306 176 359 276 8 16 chr1 20977283 20977406 -261216258 + MIR SINE MIR 18 139 -69 1481 87 0 73 chr1 20978333 20978551 -261215113 - AluSp SINE Alu 0 313 112 681 172 8 8 chr1 20980898 20981026 -261212638 - FLAM_A SINE Alu -4 138 11 390 272 48 24 chr1 20981399 20981524 -261212140 + L2 LINE L2 3184 3311 -2 236 303 15 0 chr1 20981681 20981747 -261211917 + L2 LINE L2 3198 3264 -8 1715 176 4 0 chr1 20981807 20982074 -261211590 - AluJo SINE Alu -31 281 14 947 112 0 0 chr1 20984337 20984462 -261209202 - AluSq/x SINE Alu -188 125 1 1588 125 4 42 chr1 20985248 20985512 -261208152 + AluJo SINE Alu 57 310 -2 2488 73 3 0 chr1 20985780 20986082 -261207582 - AluY SINE Alu -6 305 3 686 141 31 16 chr1 20986084 20986212 -261207452 - FLAM_C SINE Alu -3 140 11 441 176 0 0 chr1 20986225 20986299 -261207365 + Tigger7 DNA MER2_type 2414 2487 0 21 36 0 0 chr1 20986596 20986624 -261207040 + GC_rich Low_complexity Low_complexity 1 28 0 267 228 0 20 chr1 20986700 20986791 -261206873 - MIR SINE MIR -88 120 33 396 300 40 84 chr1 20987253 20987480 -261206184 + MIR SINE MIR 46 262 0 943 136 41 7 chr1 20987529 20987676 -261205988 + FAM SINE Alu 21 172 -13 2624 57 0 19 chr1 20987680 20987996 -261205668 + AluY SINE Alu 1 310 -1 255 161 54 0 chr1 20987997 20988053 -261205611 - MIR3 SINE MIR -46 162 104 892 172 31 0 chr1 20988357 20988520 -261205144 - MER3 DNA MER1_type -86 123 3 195 313 21 21 chr1 20989781 20989877 -261203787 + L2 LINE L2 3016 3111 -161 789 164 0 8 chr1 20989938 20990072 -261203592 + FLAM_C SINE Alu 1 133 0 2208 135 0 3 chr1 20990105 20990408 -261203256 + AluSx SINE Alu 1 302 -10 328 151 0 0 chr1 20990443 20990496 -261203168 + AluJ/FRAM SINE Alu 221 273 -29 809 268 153 6 chr1 20990566 20990906 -261202758 + L2 LINE L2 2181 2570 -744 273 306 87 50 chr1 20991398 20991545 -261202119 - MIR SINE MIR -65 143 16 297 232 152 0 chr1 20991743 20991842 -261201822 + L2 LINE L2 2992 3105 -167 207 290 87 0 chr1 20992148 20992217 -261201447 + L2 LINE L2 3183 3257 -56 218 260 0 0 chr1 20992269 20992319 -261201345 + GA-rich Low_complexity Low_complexity 4 53 0 332 311 92 19 chr1 20993996 20994202 -261199462 - MIR SINE MIR -22 240 20 397 267 16 96 chr1 20994620 20994807 -261198857 + MIR SINE MIR 59 230 -32 553 279 89 6 chr1 20995151 20995330 -261198334 + L2 LINE L2 3119 3312 -1 290 304 0 0 chr1 20995634 20995703 -261197961 + MIR SINE MIR 31 99 -109 374 235 102 0 chr1 20996266 20996364 -261197300 + MER53 DNA DNA 1 108 -81 2290 95 3 10 chr1 20996371 20996667 -261196997 - AluY SINE Alu -17 294 1 270 362 54 7 chr1 20997781 20997930 -261195734 - MIR SINE MIR -29 233 78 2095 144 7 7 chr1 20998842 20999148 -261194516 + AluSx SINE Alu 1 306 -6 23 0 0 0 chr1 20999466 20999489 -261194175 + AT_rich Low_complexity Low_complexity 1 23 0 1433 173 0 21 chr1 20999499 20999742 -261193922 + AluJb SINE Alu 55 292 -20 459 244 184 35 chr1 21000195 21000396 -261193268 + MIR SINE MIR 14 244 -18 313 248 305 0 chr1 21000462 21000603 -261193061 - MIR SINE MIR -27 235 52 285 287 258 0 chr1 21001889 21002056 -261191608 - MIR SINE MIR -3 259 50 276 298 169 0 chr1 21002300 21002424 -261191240 - MIR3 SINE MIR -32 176 32 275 156 0 0 chr1 21002756 21002801 -261190863 + MER103 DNA DNA 55 99 -67 386 258 168 26 chr1 21003176 21003331 -261190333 + MIR SINE MIR 12 188 -74 611 139 0 146 chr1 21004674 21004811 -261188853 + FLAM_C SINE Alu 2 118 -25 1433 155 4 42 chr1 21005439 21005703 -261187961 + AluJo SINE Alu 57 310 -2 1882 181 3 0 chr1 21006670 21006980 -261186684 + AluSx SINE Alu 2 312 0 395 253 116 16 chr1 21006995 21007185 -261186479 + MER102b DNA MER1_type 108 316 -25 1011 226 88 25 chr1 21007843 21008161 -261185503 + Charlie1 DNA MER1_type 775 1112 -1649 1678 177 3 48 chr1 21009235 21009545 -261184119 - AluJb SINE Alu -16 296 1 22 0 0 0 chr1 21009651 21009673 -261183991 + AT_rich Low_complexity Low_complexity 1 22 0 391 311 150 0 chr1 21010496 21010689 -261182975 + MIR SINE MIR 29 250 -12 966 170 33 6 chr1 21010995 21011177 -261182487 + MER20 DNA MER1_type 33 219 0 1955 51 42 4 chr1 21011303 21011576 -261182088 + AluY SINE Alu 35 316 0 2040 153 0 10 chr1 21012328 21012506 -261181158 - AluJo SINE Alu -1 311 136 1821 147 42 3 chr1 21012506 21012791 -261180873 - AluJb SINE Alu -16 296 1 2040 153 0 10 chr1 21012791 21012926 -261180738 - AluJo SINE Alu -176 136 1 1655 111 0 0 chr1 21013198 21013414 -261180250 + 7SLRNA srpRNA srpRNA 1 216 -104 289 279 221 0 chr1 21013430 21013566 -261180098 + MIR3 SINE MIR 16 181 -27 207 0 0 0 chr1 21014665 21014688 -261178976 + (T)n Simple_repeat Simple_repeat 1 23 0 197 190 38 63 chr1 21014945 21015024 -261178640 + L2 LINE L2 3232 3308 -5 396 299 62 52 chr1 21015191 21015402 -261178262 + MIR SINE MIR 2 214 -48 2149 142 0 0 chr1 21015667 21015970 -261177694 - AluSx SINE Alu -9 303 1 1841 128 4 8 chr1 21015973 21016239 -261177425 - AluSx SINE Alu -4 308 44 183 327 164 10 chr1 21016535 21016639 -261177025 + L2 LINE L2 2607 2726 -588 229 241 77 0 chr1 21016936 21017016 -261176648 + L2 LINE L2 3161 3259 -18 2372 101 0 3 chr1 21017159 21017466 -261176198 - AluSq SINE Alu -7 306 1 206 246 18 18 chr1 21019394 21019451 -261174213 + L3 LINE CR1 581 637 -940 190 317 0 33 chr1 21020389 21020449 -261173215 - MIR3 SINE MIR 0 208 151 550 163 10 0 chr1 21020975 21021073 -261172591 - L1MB7 LINE L1 -7 6177 6079 1889 131 4 4 chr1 21021074 21021342 -261172322 + AluSq SINE Alu 1 268 -45 537 214 87 70 chr1 21022738 21022967 -261170697 + MIR SINE MIR 30 262 0 383 148 222 0 chr1 21022988 21023069 -261170595 + MER6B DNA MER2_type 1 99 -177 2024 99 16 51 chr1 21023261 21023573 -261170091 - AluSx SINE Alu -11 301 1 294 24 24 0 chr1 21025182 21025224 -261168440 - AluY SINE Alu -258 43 1 2121 124 20 0 chr1 21025258 21025556 -261168108 + AluSx SINE Alu 5 308 -4 546 258 178 62 chr1 21025556 21025831 -261167833 - L2 LINE L2 -1004 2310 2004 22 35 0 0 chr1 21025994 21026023 -261167641 + AT_rich Low_complexity Low_complexity 1 29 0 1567 167 34 4 chr1 21026023 21026292 -261167372 + AluJo SINE Alu 1 277 -35 378 0 0 0 chr1 21026299 21026341 -261167323 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 779 202 0 0 chr1 21026345 21026474 -261167190 - AluJb SINE Alu -181 131 3 1401 304 153 48 chr1 21026564 21026801 -261166863 + L2 LINE L2 601 812 -2502 1590 183 63 14 chr1 21026801 21027085 -261166579 + AluJo SINE Alu 1 298 -14 1401 304 153 48 chr1 21027085 21027343 -261166321 + L2 LINE L2 812 1042 -2272 2088 149 3 0 chr1 21027343 21027652 -261166012 + AluSx SINE Alu 1 310 -2 1401 304 153 48 chr1 21027652 21028386 -261165278 + L2 LINE L2 1042 1960 -1354 192 324 44 0 chr1 21028428 21028496 -261165168 + L2 LINE L2 3238 3308 -5 418 277 130 43 chr1 21028733 21028826 -261164838 - MIR SINE MIR 0 262 178 1921 155 40 0 chr1 21028826 21029122 -261164542 - AluJb SINE Alu -4 308 1 418 277 130 43 chr1 21029122 21029259 -261164405 - MIR SINE MIR -84 178 12 196 323 46 0 chr1 21029308 21029373 -261164291 + L2 LINE L2 3238 3305 -8 2156 118 10 3 chr1 21029848 21030145 -261163519 + AluSx SINE Alu 1 299 -13 241 149 43 0 chr1 21030482 21030529 -261163135 - MER103 DNA DNA -11 155 107 708 278 129 72 chr1 21030536 21030840 -261162824 + L2 LINE L2 1584 1869 -1445 799 121 0 50 chr1 21030840 21030980 -261162684 - FLAM_C SINE Alu 0 133 1 708 278 129 72 chr1 21030980 21031273 -261162391 + L2 LINE L2 1869 2215 -1099 247 317 118 57 chr1 21031991 21032237 -261161427 + L2 LINE L2 2979 3239 -33 592 228 53 69 chr1 21032457 21032545 -261161119 + L1M4 LINE L1 4342 4430 -1716 2496 61 3 3 chr1 21032545 21032840 -261160824 - AluSp SINE Alu -18 295 1 592 228 53 69 chr1 21032840 21033054 -261160610 + L1M4 LINE L1 4430 4639 -1507 1888 149 24 14 chr1 21033054 21033343 -261160321 - AluJo SINE Alu -7 305 14 2590 58 3 10 chr1 21034156 21034469 -261159195 - AluY SINE Alu 0 311 1 280 247 37 0 chr1 21034794 21034875 -261158789 + Tigger7 DNA MER2_type 8 91 -614 * 1273 119 70 4 chr1 21034856 21035083 -261158581 + Tigger7 DNA MER2_type 2246 2487 0 240 329 0 14 chr1 21035293 21035363 -261158301 - MIR SINE MIR -181 81 13 206 315 27 0 chr1 21035384 21035457 -261158207 - MIR SINE MIR -89 119 45 1505 155 4 0 chr1 21035812 21036051 -261157613 - AluJb SINE Alu -9 303 64 396 0 0 0 chr1 21036266 21036310 -261157354 + (TG)n Simple_repeat Simple_repeat 2 45 0 543 193 76 23 chr1 21036581 21036752 -261156912 + MER113 DNA MER1_type? 38 217 -304 309 109 0 0 chr1 21037451 21037497 -261156167 + (CCCTG)n Simple_repeat Simple_repeat 4 49 0 323 235 111 20 chr1 21037755 21037908 -261155756 - L1ME4a LINE L1 0 6121 5955 1019 156 0 0 chr1 21037941 21038095 -261155569 - FRAM SINE Alu -12 154 1 1014 183 203 12 chr1 21038877 21038970 -261154694 + AluJo SINE Alu 2 76 -236 207 0 0 0 chr1 21038970 21038993 -261154671 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1014 183 203 12 chr1 21038993 21039150 -261154514 + AluJo SINE Alu 76 300 -12 491 182 29 193 chr1 21039984 21040264 -261153400 + MIR SINE MIR 28 261 -1 1758 211 55 0 chr1 21040555 21040901 -261152763 - MLT1A1 LTR MaLR 0 365 1 1596 222 82 37 chr1 21040995 21041460 -261152204 - L1ME1 LINE L1 -2 6164 5675 2674 43 0 3 chr1 21041460 21041762 -261151902 + AluY SINE Alu 1 301 -10 1596 222 82 37 chr1 21041762 21041783 -261151881 - L1ME1 LINE L1 -491 5675 5656 1964 154 16 38 chr1 21041836 21042154 -261151510 - AluSx SINE Alu -1 311 1 2020 155 3 0 chr1 21042434 21042730 -261150934 - AluJb SINE Alu -15 297 1 369 289 66 13 chr1 21042733 21042885 -261150779 - MIR SINE MIR -56 206 47 558 241 126 6 chr1 21043596 21043770 -261149894 - MIR SINE MIR -54 208 14 450 111 25 37 chr1 21044156 21044237 -261149427 + MER116 DNA Mariner 1 80 0 1256 185 3 96 chr1 21044475 21044598 -261149066 + AluJo SINE Alu 1 134 -178 534 31 0 0 chr1 21044598 21044662 -261149002 + (TAGA)n Simple_repeat Simple_repeat 4 67 0 1256 185 3 96 chr1 21044662 21044851 -261148813 + AluJo SINE Alu 134 284 -28 221 86 57 0 chr1 21045284 21045319 -261148345 + MIR SINE MIR 108 144 -64 534 202 65 19 chr1 21045367 21045521 -261148143 + MIR SINE MIR 25 186 -62 803 150 0 39 chr1 21046191 21046318 -261147346 - FLAM_A SINE Alu -10 123 2 191 265 241 0 chr1 21046640 21046723 -261146941 + MIR SINE MIR 89 191 -71 242 250 90 30 chr1 21046766 21046866 -261146798 - MIR SINE MIR 0 262 157 294 259 25 12 chr1 21047263 21047344 -261146320 + MIR SINE MIR 114 195 -67 2135 139 0 7 chr1 21047363 21047666 -261145998 + AluSg SINE Alu 1 301 -9 396 323 130 10 chr1 21048705 21048897 -261144767 - MIR SINE MIR -27 235 21 360 286 9 18 chr1 21048924 21049036 -261144628 - L2 LINE L2 -10 3303 3193 335 271 65 9 chr1 21049399 21049506 -261144158 - MIR SINE MIR -1 261 149 217 245 138 24 chr1 21049849 21049977 -261143687 + MIR3 SINE MIR 8 157 -51 246 169 325 12 chr1 21050319 21050402 -261143262 + L2 LINE L2 3183 3291 -22 1464 163 39 19 chr1 21051563 21051821 -261141843 - AluJo SINE Alu -49 263 1 2455 75 0 0 chr1 21051865 21052159 -261141505 - AluSg1 SINE Alu -10 299 6 943 199 91 14 chr1 21052194 21052481 -261141183 + L1M4 LINE L1 4622 4930 -1216 1388 164 0 94 chr1 21052483 21052660 -261141004 - AluJo SINE Alu -3 309 170 2044 134 3 7 chr1 21052660 21052958 -261140706 - AluJb SINE Alu -7 305 9 1388 164 0 94 chr1 21052958 21053079 -261140585 - AluJo SINE Alu -142 170 39 892 194 63 8 chr1 21053080 21053332 -261140332 + L1M4 LINE L1 4932 5197 -949 2084 143 3 0 chr1 21054003 21054303 -261139361 - AluJo SINE Alu -10 302 2 759 255 174 24 chr1 21054431 21054729 -261138935 + MLT1J2 LTR MaLR 97 439 -11 2253 72 44 17 chr1 21054815 21055108 -261138556 + AluY SINE Alu 1 301 -10 200 288 36 85 chr1 21055145 21055277 -261138387 - MIR SINE MIR -78 130 3 2062 137 0 7 chr1 21055753 21055764 -261137900 - AluSq SINE Alu -15 298 288 351 0 0 0 chr1 21055764 21055803 -261137861 + (TG)n Simple_repeat Simple_repeat 2 40 0 2062 137 0 7 chr1 21055803 21056091 -261137573 - AluSq SINE Alu -25 288 1 2052 149 0 3 chr1 21056091 21056393 -261137271 - AluSq SINE Alu -12 301 1 478 163 225 4 chr1 21056395 21056544 -261137120 + MSTA LTR MaLR 177 360 -68 905 191 12 0 chr1 21056547 21056709 -261136955 + LOR1-int LTR ERV1 5490 5653 -2467 1272 170 28 25 chr1 21056711 21056994 -261136670 + LTR8A LTR ERV1 386 669 -58 2187 133 10 0 chr1 21057084 21057393 -261136271 + AluSx SINE Alu 1 312 0 1989 123 0 11 chr1 21057401 21057670 -261135994 + AluSx SINE Alu 2 267 -45 22 0 0 0 chr1 21058254 21058276 -261135388 + GC_rich Low_complexity Low_complexity 1 22 0 33 25 0 0 chr1 21058285 21058325 -261135339 + GC_rich Low_complexity Low_complexity 1 40 0 201 108 0 0 chr1 21058420 21058457 -261135207 + (CGCGG)n Simple_repeat Simple_repeat 5 41 0 231 114 0 0 chr1 21058694 21058729 -261134935 + (CAGCC)n Simple_repeat Simple_repeat 5 39 0 341 208 78 0 chr1 21058849 21058926 -261134738 - L2 LINE L2 -19 3294 3212 2374 60 25 0 chr1 21058992 21059277 -261134387 + AluSc SINE Alu 1 292 -17 183 100 0 0 chr1 21059382 21059412 -261134252 + (TC)n Simple_repeat Simple_repeat 1 30 0 501 289 52 0 chr1 21059705 21059840 -261133824 - L2 LINE L2 -11 3302 3161 993 101 22 7 chr1 21059850 21059988 -261133676 + AluSq/x SINE Alu 1 140 -173 2508 48 3 0 chr1 21059989 21060279 -261133385 + AluY SINE Alu 1 291 -20 677 257 99 118 chr1 21060343 21060943 -261132721 - L2 LINE L2 -254 3059 2449 1932 123 22 51 chr1 21060943 21061259 -261132405 - AluJo SINE Alu -5 307 1 1919 140 71 14 chr1 21061260 21061624 -261132040 - L1MC1 LINE L1 -9 6324 5940 677 257 99 118 chr1 21061624 21061763 -261131901 - L2 LINE L2 -864 2449 2316 2263 126 0 0 chr1 21061763 21062064 -261131600 - AluSx SINE Alu -11 301 1 677 257 99 118 chr1 21062064 21062076 -261131588 - L2 LINE L2 -997 2316 2305 2331 89 0 52 chr1 21062076 21062400 -261131264 - AluSx SINE Alu -5 307 1 27 29 0 0 chr1 21062469 21062503 -261131161 + AT_rich Low_complexity Low_complexity 1 34 0 212 204 19 0 chr1 21062527 21062581 -261131083 + (TA)n Simple_repeat Simple_repeat 1 55 0 303 253 69 11 chr1 21062605 21062692 -261130972 + L1MC4 LINE L1 6612 6703 -1339 278 171 73 16 chr1 21062700 21062823 -261130841 + (TA)n Simple_repeat Simple_repeat 2 131 0 330 276 46 0 chr1 21062824 21062911 -261130753 - L1MC4 LINE L1 -1338 6704 6614 309 244 23 23 chr1 21062837 21062923 -261130741 + L1MC4 LINE L1 6618 6703 -1339 * 213 214 22 22 chr1 21062930 21063019 -261130645 + (TA)n Simple_repeat Simple_repeat 1 89 0 1196 155 58 0 chr1 21063023 21063249 -261130415 - L1MB3 LINE L1 -25 6158 5920 660 143 86 24 chr1 21063249 21063378 -261130286 - MER33 DNA MER1_type -266 58 1 721 132 0 0 chr1 21064027 21064133 -261129531 + AluSg/x SINE Alu 196 301 -8 535 197 181 48 chr1 21064204 21064392 -261129272 - MIR SINE MIR -48 214 2 242 287 176 80 chr1 21064523 21064711 -261128953 - L2 LINE L2 -23 3249 3044 314 288 82 60 chr1 21064802 21064986 -261128678 - L2 LINE L2 -512 2802 2615 1880 148 0 0 chr1 21065493 21065763 -261127901 - AluSx SINE Alu -42 270 1 192 267 217 17 chr1 21065764 21065884 -261127780 + L2 LINE L2 2682 2825 -489 2285 113 3 0 chr1 21065908 21066219 -261127445 - AluSx SINE Alu 0 312 1 380 258 295 11 chr1 21066471 21066661 -261127003 - MIR SINE MIR -3 259 16 384 311 36 36 chr1 21067172 21067339 -261126325 - MIR SINE MIR -56 206 40 3289 148 58 0 chr1 21067490 21068058 -261125606 - Tigger7 DNA MER2_type -1878 609 9 2403 85 0 13 chr1 21069078 21069395 -261124269 + AluSq SINE Alu 1 313 0 424 200 0 0 chr1 21069474 21069554 -261124110 - MER116 DNA Mariner 0 80 1 325 328 107 20 chr1 21069931 21070175 -261123489 - L1ME LINE L1 -473 5648 5384 2070 142 7 0 chr1 21071522 21071818 -261121846 + AluSx SINE Alu 1 298 -14 384 311 36 36 chr1 21073053 21073220 -261120444 + MIR SINE MIR 40 206 -56 380 258 295 11 chr1 21073731 21073921 -261119743 + MIR SINE MIR 16 259 -3 2285 113 3 0 chr1 21074173 21074484 -261119180 + AluSx SINE Alu 1 312 0 2191 135 0 3 chr1 21074629 21074940 -261118724 + AluSx SINE Alu 1 310 -2 304 363 24 8 chr1 21075292 21075416 -261118248 - L2 LINE L2 -16 3297 3172 23 33 0 0 chr1 21075761 21075791 -261117873 + AT_rich Low_complexity Low_complexity 1 30 0 193 259 0 52 chr1 21075827 21075885 -261117779 + L2 LINE L2 3216 3270 -2 774 254 97 0 chr1 21077074 21077259 -261116405 + MIR SINE MIR 28 230 -32 1374 159 13 25 chr1 21077265 21077504 -261116160 + MER46A DNA MER2_type 1 236 0 1992 162 0 9 chr1 21077559 21077874 -261115790 - AluJo SINE Alu 0 312 1 261 146 0 0 chr1 21077884 21077932 -261115732 + (TC)n Simple_repeat Simple_repeat 1 48 0 2011 149 14 0 chr1 21077932 21078227 -261115437 - AluSx SINE Alu -13 299 1 1501 101 0 68 chr1 21080198 21080417 -261113247 + AluSx SINE Alu 1 204 -108 216 0 0 0 chr1 21080436 21080460 -261113204 + (A)n Simple_repeat Simple_repeat 1 24 0 331 247 78 65 chr1 21080840 21080994 -261112670 - L1ME4a LINE L1 -35 6086 5931 301 248 165 16 chr1 21081137 21081258 -261112406 - L1ME4a LINE L1 -439 5682 5544 766 206 126 32 chr1 21081847 21082094 -261111570 - L1MB8 LINE L1 0 6178 5909 240 250 177 21 chr1 21082197 21082293 -261111371 + L1ME4a LINE L1 6010 6120 -1 248 248 18 53 chr1 21082324 21082437 -261111227 - L1ME4a LINE L1 -45 6076 5968 371 284 106 15 chr1 21082466 21082671 -261110993 - L1ME4a LINE L1 -225 5896 5676 2263 128 0 0 chr1 21082691 21082997 -261110667 + AluSx SINE Alu 1 306 -6 1516 96 0 0 chr1 21083561 21083758 -261109906 - AluSg/x SINE Alu -15 295 99 210 281 0 0 chr1 21083976 21084033 -261109631 + MIR SINE MIR 85 141 -121 195 42 0 0 chr1 21084105 21084129 -261109535 + (CAA)n Simple_repeat Simple_repeat 2 25 0 2063 129 0 28 chr1 21084312 21084629 -261109035 - AluJo SINE Alu -4 308 1 226 267 53 0 chr1 21085295 21085370 -261108294 - L1MC5 LINE L1 -83 7878 7800 2401 92 0 3 chr1 21085705 21086008 -261107656 - AluSx SINE Alu -10 302 1 2604 68 0 0 chr1 21086644 21086955 -261106709 - AluY SINE Alu 0 311 1 21 0 0 0 chr1 21087313 21087334 -261106330 + AT_rich Low_complexity Low_complexity 1 21 0 1100 143 7 0 chr1 21087397 21087551 -261106113 + AluJb SINE Alu 1 155 -157 270 320 196 19 chr1 21087964 21088327 -261105337 + L3 LINE CR1 1148 1574 -3 255 309 11 11 chr1 21090950 21091044 -261102620 - MIR SINE MIR -13 249 156 530 167 0 0 chr1 21091047 21091131 -261102533 - Tigger7 DNA MER2_type 0 2487 2404 2861 165 58 2 chr1 21091133 21091655 -261102009 - Tigger7 DNA MER2_type -182 551 1 610 286 7 7 chr1 21091655 21091795 -261101869 - MIR SINE MIR -108 154 15 566 282 154 14 chr1 21091940 21092160 -261101504 + MIR SINE MIR 12 262 0 1774 123 44 0 chr1 21092828 21093079 -261100585 - AluJb SINE Alu -43 269 8 653 200 0 0 chr1 21093185 21093290 -261100374 - FLAM_C SINE Alu -37 106 2 490 295 44 26 chr1 21093312 21093549 -261100115 - MIR SINE MIR -14 248 9 350 237 85 10 chr1 21094964 21095094 -261098570 + MIR SINE MIR 42 182 -62 22 0 0 0 chr1 21095229 21095251 -261098413 + AT_rich Low_complexity Low_complexity 1 22 0 1828 181 3 13 chr1 21095269 21095572 -261098092 - AluSx SINE Alu -12 300 1 1574 148 130 4 chr1 21095660 21095930 -261097734 - AluJo SINE Alu 0 312 9 2442 60 0 66 chr1 21095982 21096315 -261097349 - AluY SINE Alu 0 311 1 715 133 210 56 chr1 21096362 21096557 -261097107 - MER46A DNA MER2_type -11 225 1 260 211 0 67 chr1 21099217 21099286 -261094378 + L1MB4 LINE L1 6069 6132 -48 2173 107 6 49 chr1 21099286 21099612 -261094052 - AluSx SINE Alu 0 312 1 260 211 0 67 chr1 21099612 21099632 -261094032 + L1MB4 LINE L1 6132 6152 -28 627 205 41 29 chr1 21100864 21101035 -261092629 - MLT1G1 LTR MaLR 0 567 395 690 248 19 48 chr1 21101136 21101387 -261092277 - MLT1G1 LTR MaLR -377 213 5 293 283 92 64 chr1 21102240 21102413 -261091251 + L2 LINE L2 3136 3313 0 15176 85 2 1 chr1 21102572 21104612 -261089052 - HERVK9 LTR ERVK -2537 3379 1337 3138 116 13 20 chr1 21104606 21105129 -261088535 - HERVK9 LTR ERVK -5309 607 1 * 3520 108 12 6 chr1 21105129 21105637 -261088027 - MER9 LTR ERVK 0 511 1 1050 178 16 5 chr1 21105668 21105839 -261087825 + AluJo SINE Alu 107 275 -37 399 21 0 0 chr1 21105839 21105887 -261087777 + (TC)n Simple_repeat Simple_repeat 2 49 0 279 0 0 0 chr1 21105886 21105917 -261087747 + (TA)n Simple_repeat Simple_repeat 2 32 0 * 1050 178 16 5 chr1 21105887 21105936 -261087728 + AluJo SINE Alu 275 299 -13 1822 151 3 14 chr1 21105936 21106221 -261087443 + AluJb SINE Alu 14 295 -17 35 24 0 0 chr1 21106221 21106263 -261087401 + AT_rich Low_complexity Low_complexity 1 42 0 1446 205 50 14 chr1 21106263 21106381 -261087283 + L1M4 LINE L1 4382 4494 -1652 2230 109 0 0 chr1 21106381 21106685 -261086979 + AluSx SINE Alu 1 304 0 1446 205 50 14 chr1 21106685 21106989 -261086675 + L1M4 LINE L1 4494 4820 -1326 2392 100 13 0 chr1 21107017 21107326 -261086338 + AluSp SINE Alu 1 313 0 2609 87 34 11 chr1 21107885 21108241 -261085423 + THE1B LTR MaLR 1 364 0 1387 191 32 12 chr1 21108311 21108562 -261085102 - AluJo SINE Alu -56 256 1 680 160 66 0 chr1 21109027 21109133 -261084531 + AluJ SINE Alu 3 115 -197 1485 120 214 13 chr1 21109133 21109441 -261084223 + MSTA LTR MaLR 2 371 -57 740 229 0 7 chr1 21109444 21109588 -261084076 + AluSq/x SINE Alu 2 144 -169 1073 113 14 0 chr1 21109695 21109837 -261083827 - AluSq/x SINE Alu -169 144 1 1277 166 0 19 chr1 21109876 21110081 -261083583 + AluJ SINE Alu 110 310 -2 2348 72 7 3 chr1 21110239 21110531 -261083133 - AluSq SINE Alu -20 293 1 2268 120 0 0 chr1 21111092 21111401 -261082263 + AluSg1 SINE Alu 1 309 0 2159 43 85 0 chr1 21111404 21111662 -261082002 + AluY SINE Alu 3 282 -29 2032 128 47 0 chr1 21112013 21112310 -261081354 + AluJb SINE Alu 1 311 -1 313 145 48 0 chr1 21112394 21112456 -261081208 - MSTA LTR MaLR 0 428 364 644 160 56 24 chr1 21112568 21112693 -261080971 - FLAM_C SINE Alu -4 129 1 1422 215 25 30 chr1 21112693 21113097 -261080567 - Charlie4a DNA MER1_type -68 440 39 815 265 113 16 chr1 21113246 21113555 -261080109 + L2 LINE L2 2332 2670 -644 926 129 0 41 chr1 21113555 21113702 -261079962 - FLAM_C SINE Alu -2 141 1 1991 131 38 0 chr1 21113716 21114006 -261079658 - AluJb SINE Alu -11 301 1 269 167 0 0 chr1 21114008 21114050 -261079614 + L2 LINE L2 2659 2700 -614 802 278 0 23 chr1 21114059 21114275 -261079389 + L2 LINE L2 2856 3066 -247 1927 132 0 0 chr1 21114293 21114550 -261079114 - AluSx SINE Alu -55 257 1 439 314 63 0 chr1 21114767 21114942 -261078722 + MIR SINE MIR 12 197 -65 2461 82 0 0 chr1 21114946 21115240 -261078424 + AluSg SINE Alu 1 294 -16 2169 137 0 19 chr1 21115257 21115572 -261078092 + AluJb SINE Alu 1 309 -3 827 138 8 0 chr1 21116945 21117068 -261076596 - FLAM_C SINE Alu -7 136 13 1514 151 0 4 chr1 21117420 21117645 -261076019 + AluJb SINE Alu 89 312 0 432 218 73 24 chr1 21117838 21117962 -261075702 - LTR67 LTR ERVL 0 557 428 243 206 10 155 chr1 21118008 21118038 -261075626 + MER91C DNA MER1_type 36 69 -71 419 142 92 231 chr1 21118038 21118107 -261075557 + MER58A DNA MER1_type 1 78 -2342 2229 125 0 22 chr1 21118107 21118426 -261075238 + AluSx SINE Alu 1 312 0 419 142 92 231 chr1 21118426 21118616 -261075048 + MER58A DNA MER1_type 78 224 0 243 206 10 155 chr1 21118616 21118682 -261074982 + MER91C DNA MER1_type 69 118 -22 4692 166 69 33 chr1 21119103 21120137 -261073527 - MER11C LTR ERVK 0 1071 1 554 197 6 109 chr1 21120147 21120330 -261073334 + L2 LINE L2 2538 2701 -613 525 59 15 0 chr1 21120363 21120431 -261073233 - MSTA LTR MaLR 0 428 360 1722 161 3 0 chr1 21120433 21120718 -261072946 + AluSx SINE Alu 5 290 -22 31 179 0 0 chr1 21120825 21120881 -261072783 + GC_rich Low_complexity Low_complexity 1 56 0 1191 159 44 9 chr1 21120948 21121174 -261072490 - MSTA LTR MaLR -160 268 35 1864 99 51 0 chr1 21121174 21121447 -261072217 + AluSx SINE Alu 1 287 -25 1267 258 120 2 chr1 21121459 21122002 -261071662 + L2 LINE L2 2691 3311 -2 988 158 6 6 chr1 21122281 21122445 -261071219 - AluJo/FRAM SINE Alu -2 300 137 1879 89 3 98 chr1 21122448 21122797 -261070867 - AluSx SINE Alu 0 302 1 356 314 95 0 chr1 21122816 21122921 -261070743 - L2 LINE L2 -5 3267 3153 825 176 0 0 chr1 21123015 21123157 -261070507 + FLAM_C SINE Alu 1 142 -1 2280 105 0 0 chr1 21123178 21123484 -261070180 + AluSx SINE Alu 1 306 -6 1864 98 4 11 chr1 21123615 21123916 -261069748 + AluSx SINE Alu 19 317 0 192 94 57 75 chr1 21123919 21123972 -261069692 - L2 LINE L2 -4 3309 3258 1756 155 3 13 chr1 21124198 21124501 -261069163 - AluJb SINE Alu -12 300 1 673 206 75 0 chr1 21124603 21124749 -261068915 + MER2 DNA MER2_type 1 157 -188 510 145 0 0 chr1 21124769 21124845 -261068819 - FLAM_A SINE Alu -61 81 6 591 49 37 0 chr1 21124848 21124930 -261068734 + MER2 DNA MER2_type 122 206 -139 276 111 0 0 chr1 21125027 21125072 -261068592 + (TG)n Simple_repeat Simple_repeat 2 46 0 482 219 169 0 chr1 21125859 21126019 -261067645 - MIR SINE MIR -74 188 2 190 163 82 20 chr1 21126184 21126233 -261067431 - L2 LINE L2 0 3313 3262 2288 88 0 0 chr1 21126433 21126729 -261066935 + AluSq SINE Alu 1 296 -17 1471 184 0 11 chr1 21127572 21127839 -261065825 + AluJb SINE Alu 22 285 -27 1806 118 0 4 chr1 21127858 21128112 -261065552 - AluSx SINE Alu -59 253 1 227 91 0 23 chr1 21128121 21128165 -261065499 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 813 206 0 13 chr1 21128167 21128322 -261065342 - FAM SINE Alu -27 158 6 1379 161 4 4 chr1 21128369 21128605 -261065059 - AluJo SINE Alu -76 236 1 1252 194 56 0 chr1 21128723 21128955 -261064709 - AluJb SINE Alu -67 245 1 1985 133 7 0 chr1 21128985 21129294 -261064370 + AluSx SINE Alu 1 311 -1 289 215 148 20 chr1 21129307 21129456 -261064208 - L1MC5 LINE L1 -244 7717 7550 2219 88 3 0 chr1 21129545 21129841 -261063823 - AluSx SINE Alu -15 297 1 365 229 30 38 chr1 21129842 21129973 -261063691 - L1MC5 LINE L1 -564 7397 7268 1326 198 74 7 chr1 21130012 21130295 -261063369 + MLT2D LTR ERVL 93 394 -20 337 233 97 19 chr1 21130338 21130441 -261063223 - L1ME4a LINE L1 -193 5928 5818 868 146 0 29 chr1 21130500 21130637 -261063027 + AluJo SINE Alu 1 133 -169 858 201 6 11 chr1 21130767 21130946 -261062718 + AluJo SINE Alu 135 312 0 2094 110 0 10 chr1 21130954 21131255 -261062409 + AluSx SINE Alu 1 298 -14 343 217 46 92 chr1 21131275 21131427 -261062237 - L1ME4a LINE L1 -229 5892 5748 924 118 0 7 chr1 21132400 21132535 -261061129 + AluSq/x SINE Alu 1 134 -179 381 314 70 92 chr1 21132632 21132802 -261060862 - L2 LINE L2 -9 3263 3091 1881 128 13 13 chr1 21132802 21133106 -261060558 + AluJb SINE Alu 1 304 -8 381 314 70 92 chr1 21133106 21133680 -261059984 - L2 LINE L2 -181 3091 2534 500 266 41 148 chr1 21133972 21134100 -261059564 + L2 LINE L2 2545 2685 -629 687 128 0 147 chr1 21134100 21134256 -261059408 - FLAM_C SINE Alu 0 133 1 1668 174 0 37 chr1 21134262 21134583 -261059081 - AluJo SINE Alu -3 309 1 500 266 41 148 chr1 21134583 21134865 -261058799 + L2 LINE L2 2690 2917 -397 603 241 36 36 chr1 21134887 21135053 -261058611 - L2 LINE L2 -4 3309 3144 1788 144 3 26 chr1 21135053 21135359 -261058305 + AluJo SINE Alu 1 299 -13 249 252 35 133 chr1 21135369 21135512 -261058152 + L2 LINE L2 3184 3312 -1 1683 165 10 16 chr1 21135707 21136016 -261057648 + AluJb SINE Alu 1 307 -5 276 226 0 0 chr1 21136069 21136122 -261057542 + HAL1 LINE L1 1485 1537 -970 233 222 0 0 chr1 21136154 21136199 -261057465 - LTR67 LTR ERVL -31 526 482 282 263 12 0 chr1 21136199 21136279 -261057385 + HAL1 LINE L1 1561 1641 -866 1927 131 0 3 chr1 21136471 21136761 -261056903 - AluSq SINE Alu 0 313 25 823 188 0 0 chr1 21136772 21136910 -261056754 - AluJb SINE Alu -4 308 171 1543 175 17 118 chr1 21137125 21137199 -261056465 + MLT1A1 LTR MaLR 1 81 -284 1940 162 0 0 chr1 21137199 21137502 -261056162 + AluJb SINE Alu 1 303 -9 1543 175 17 118 chr1 21137502 21137833 -261055831 + MLT1A1 LTR MaLR 81 365 0 739 317 54 5 chr1 21137859 21138083 -261055581 - HERV16 LTR ERVL -4761 235 1 787 258 5 125 chr1 21138089 21138105 -261055559 - LTR16A LTR ERVL -6 444 428 1477 224 83 6 chr1 21138105 21138444 -261055220 + MLT1A1 LTR MaLR 1 365 0 787 258 5 125 chr1 21138444 21138649 -261055015 - LTR16A LTR ERVL -22 428 200 1905 142 30 0 chr1 21138649 21138952 -261054712 - AluSx SINE Alu 0 312 1 787 258 5 125 chr1 21138952 21138979 -261054685 - LTR16A LTR ERVL -250 200 171 2161 133 72 20 chr1 21138979 21139325 -261054339 + THE1B LTR MaLR 1 364 0 787 258 5 125 chr1 21139325 21139442 -261054222 - LTR16A LTR ERVL -279 171 121 1992 117 0 3 chr1 21139550 21139863 -261053801 - AluSq SINE Alu 0 314 3 294 313 22 62 chr1 21139868 21140063 -261053601 - L1M4 LINE L1 -874 5272 5093 2007 128 7 0 chr1 21140063 21140361 -261053303 + AluSx SINE Alu 1 300 -12 294 313 22 62 chr1 21140361 21140485 -261053179 - L1M4 LINE L1 -1053 5093 4966 185 334 97 43 chr1 21140637 21140966 -261052698 + L2 LINE L2 1930 2276 -1038 1989 137 3 0 chr1 21141007 21141307 -261052357 - AluSg SINE Alu -9 301 1 2548 136 4 73 chr1 21141312 21141360 -261052304 - L1MC1 LINE L1 -15 6318 6268 1759 123 0 66 chr1 21141360 21141694 -261051970 + AluJo SINE Alu 1 312 0 2548 136 4 73 chr1 21141694 21141900 -261051764 - L1MC1 LINE L1 -65 6268 6049 1994 125 3 3 chr1 21141900 21142197 -261051467 + AluSx SINE Alu 1 297 -15 2548 136 4 73 chr1 21142197 21142332 -261051332 - L1MC1 LINE L1 -284 6049 5968 2008 131 3 6 chr1 21142332 21142645 -261051019 - AluSx SINE Alu 0 312 1 2548 136 4 73 chr1 21142645 21142760 -261050904 - L1MC1 LINE L1 -365 5968 5847 198 219 10 156 chr1 21142858 21142954 -261050710 - MIR SINE MIR -70 192 111 2018 107 0 33 chr1 21143178 21143478 -261050186 + AluSx SINE Alu 12 301 -11 22 35 0 0 chr1 21143883 21143912 -261049752 + AT_rich Low_complexity Low_complexity 1 29 0 303 289 82 0 chr1 21144025 21144122 -261049542 + L2 LINE L2 3205 3309 -4 2328 93 0 0 chr1 21144745 21145055 -261048609 - AluSg SINE Alu 0 310 1 2093 100 0 0 chr1 21145065 21145374 -261048290 - AluSx SINE Alu 0 309 1 1625 270 76 13 chr1 21145374 21145911 -261047753 + L2 LINE L2 1608 2178 -1136 180 0 0 0 chr1 21146500 21146520 -261047144 + (TTC)n Simple_repeat Simple_repeat 1 20 0 2121 120 0 0 chr1 21146522 21146822 -261046842 - AluSq SINE Alu -13 300 1 1951 238 118 25 chr1 21146914 21147553 -261046111 + L2 LINE L2 2318 3010 -303 2006 137 0 3 chr1 21147581 21147880 -261045784 - AluSx SINE Alu -14 298 1 2205 99 3 0 chr1 21148093 21148387 -261045277 + AluSp SINE Alu 2 296 -17 1470 177 4 11 chr1 21149233 21149499 -261044165 + AluJb SINE Alu 22 285 -27 1820 114 0 4 chr1 21149518 21149772 -261043892 - AluSx SINE Alu -59 253 1 227 91 0 23 chr1 21149781 21149825 -261043839 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 828 200 0 13 chr1 21149827 21149982 -261043682 - FAM SINE Alu -27 158 6 1717 167 3 3 chr1 21149993 21150293 -261043371 - AluJo SINE Alu -12 300 1 1927 125 7 0 chr1 21150298 21150585 -261043079 - AluSx SINE Alu -13 299 11 1971 136 0 0 chr1 21150697 21150984 -261042680 + AluJb SINE Alu 9 295 -17 180 0 0 0 chr1 21151061 21151081 -261042583 + (TTTG)n Simple_repeat Simple_repeat 4 23 0 1443 159 12 4 chr1 21151081 21151326 -261042338 - AluJb SINE Alu -65 247 1 1988 120 0 0 chr1 21151657 21151932 -261041732 + AluSx SINE Alu 1 275 -37 186 71 0 0 chr1 21151936 21151964 -261041700 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 681 256 43 39 chr1 21152040 21152274 -261041390 - L2 LINE L2 0 3313 3079 338 91 0 0 chr1 21152291 21152335 -261041329 - LTR33 LTR ERVL 0 521 478 1714 141 3 28 chr1 21152426 21152716 -261040948 + AluJb SINE Alu 1 283 -29 333 62 0 0 chr1 21152716 21152764 -261040900 + (TAGA)n Simple_repeat Simple_repeat 4 51 0 2001 117 3 38 chr1 21152764 21153081 -261040583 + AluSx SINE Alu 2 307 -5 484 198 207 0 chr1 21153088 21153209 -261040455 - LTR33 LTR ERVL -50 471 326 1500 140 68 118 chr1 21153214 21153469 -261040195 - MER7A DNA MER2_type -2692 346 115 2270 101 0 0 chr1 21153469 21153776 -261039888 - AluSx SINE Alu -5 307 1 1500 140 68 118 chr1 21153776 21153885 -261039779 - MER7A DNA MER2_type -2923 115 2 1457 174 56 11 chr1 21153906 21154193 -261039471 + AluSg SINE Alu 1 300 -10 235 294 15 15 chr1 21154261 21154329 -261039335 - MIR SINE MIR -124 84 17 1662 225 48 48 chr1 21154329 21154678 -261038986 - MLT1C LTR MaLR 0 467 119 1890 133 10 23 chr1 21154678 21154987 -261038677 - AluJo SINE Alu -7 305 1 1662 225 48 48 chr1 21154987 21155004 -261038660 - MLT1C LTR MaLR -348 119 103 1983 103 3 58 chr1 21155004 21155316 -261038348 - AluSq SINE Alu -18 295 1 1662 225 48 48 chr1 21155316 21155410 -261038254 - MLT1C LTR MaLR -363 104 6 1309 236 69 71 chr1 21155556 21155808 -261037856 + L1ME3A LINE L1 5412 5663 -507 1587 164 7 25 chr1 21155808 21156094 -261037570 + AluJb SINE Alu 1 281 -31 1309 236 69 71 chr1 21156094 21156172 -261037492 + L1ME3A LINE L1 5663 5740 -430 2184 115 0 0 chr1 21156172 21156477 -261037187 + AluSx SINE Alu 1 305 -7 1309 236 69 71 chr1 21156477 21156697 -261036967 + L1ME3A LINE L1 5740 5962 -208 1446 177 60 21 chr1 21156768 21157051 -261036613 + AluJo SINE Alu 3 296 -16 926 190 0 0 chr1 21157185 21157348 -261036316 - FRAM SINE Alu -21 155 1 1203 153 113 18 chr1 21157362 21157637 -261036027 - AluJb SINE Alu -11 301 1 1879 151 6 3 chr1 21157874 21158185 -261035479 - AluJo SINE Alu 0 312 1 1783 160 3 0 chr1 21158606 21158922 -261034742 + AluJb SINE Alu 1 317 0 907 199 0 12 chr1 21158927 21159093 -261034571 + FRAM SINE Alu 3 166 0 573 227 61 0 chr1 21159131 21159263 -261034401 - L1MC4a LINE L1 -1197 6611 6472 427 209 12 0 chr1 21159384 21159470 -261034194 - L2 LINE L2 0 3313 3227 288 237 14 7 chr1 21159516 21159585 -261034079 - MIR SINE MIR -126 82 17 303 285 146 14 chr1 21159688 21159832 -261033832 + MIR SINE MIR 79 241 -21 856 148 34 0 chr1 21159833 21159982 -261033682 - AluJb SINE Alu -22 290 137 2286 79 3 0 chr1 21160105 21160410 -261033254 - AluY SINE Alu -5 306 1 356 314 95 0 chr1 21160429 21160534 -261033130 - L2 LINE L2 -5 3267 3153 825 176 0 0 chr1 21160628 21160770 -261032894 + FLAM_C SINE Alu 1 142 -1 2280 105 0 0 chr1 21160791 21161097 -261032567 + AluSx SINE Alu 1 306 -6 1836 105 4 11 chr1 21161228 21161529 -261032135 + AluSx SINE Alu 19 317 0 192 94 57 75 chr1 21161532 21161585 -261032079 - L2 LINE L2 -4 3309 3258 1756 155 3 13 chr1 21161811 21162114 -261031550 - AluJb SINE Alu -12 300 1 690 199 75 0 chr1 21162216 21162362 -261031302 + MER2 DNA MER2_type 1 157 -188 510 145 0 0 chr1 21162382 21162458 -261031206 - FLAM_A SINE Alu -61 81 6 591 49 37 0 chr1 21162461 21162543 -261031121 + MER2 DNA MER2_type 122 206 -139 258 116 0 0 chr1 21162640 21162683 -261030981 + (TG)n Simple_repeat Simple_repeat 2 44 0 21 71 0 0 chr1 21163653 21163695 -261029969 + GC_rich Low_complexity Low_complexity 1 42 0 318 339 50 8 chr1 21164251 21164372 -261029292 - MIR SINE MIR -64 144 19 424 235 0 0 chr1 21164476 21164557 -261029107 + L2 LINE L2 3193 3273 -40 559 232 42 0 chr1 21164623 21164765 -261028899 + MIR SINE MIR 71 218 -44 872 123 0 0 chr1 21164924 21165054 -261028610 + FLAM_C SINE Alu 2 131 -2 299 264 130 82 chr1 21165062 21165293 -261028371 + MIR SINE MIR 20 261 -1 32 26 0 0 chr1 21165300 21165339 -261028325 + AT_rich Low_complexity Low_complexity 1 39 0 821 142 0 22 chr1 21165339 21165473 -261028191 - AluJo SINE Alu -176 136 6 1738 161 3 7 chr1 21165486 21165785 -261027879 - AluJb SINE Alu -14 298 1 299 207 241 0 chr1 21166119 21166206 -261027458 - MIR SINE MIR -122 140 33 308 94 0 57 chr1 21166499 21166552 -261027112 - MADE1 DNA Mariner -29 51 2 182 179 0 0 chr1 21166689 21166717 -261026947 + MIR SINE MIR 125 152 -56 1804 169 3 0 chr1 21167034 21167329 -261026335 - AluJb SINE Alu -16 296 1 1882 154 7 0 chr1 21167725 21168031 -261025633 + AluJb SINE Alu 1 308 -4 572 247 124 5 chr1 21168455 21168649 -261025015 + L2 LINE L2 3095 3311 -2 1981 106 3 3 chr1 21169476 21169760 -261023904 + AluSq SINE Alu 1 284 -29 887 116 8 0 chr1 21169639 21169760 -261023904 + AluSp/q SINE Alu 163 305 0 190 0 0 0 chr1 21169760 21169781 -261023883 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 233 299 131 19 chr1 21170169 21170276 -261023388 - L2 LINE L2 -559 2755 2637 431 194 116 33 chr1 21170518 21170651 -261023013 + MIR SINE MIR 107 250 -12 1995 136 3 10 chr1 21170653 21170954 -261022710 + AluSx SINE Alu 1 299 -13 220 308 33 33 chr1 21171140 21171231 -261022433 - L2 LINE L2 -39 3233 3143 293 225 34 79 chr1 21171374 21171463 -261022201 - MIR SINE MIR -3 259 175 2229 178 55 38 chr1 21171676 21172155 -261021509 - L1MB8 LINE L1 0 6178 5686 757 159 32 0 chr1 21172155 21172281 -261021383 - FLAM_A SINE Alu -3 130 1 2229 178 55 38 chr1 21172281 21172385 -261021279 - L1MB8 LINE L1 -492 5686 5585 230 298 129 72 chr1 21172385 21172734 -261020930 - L2 LINE L2 -565 2749 2381 2319 113 0 10 chr1 21172892 21173201 -261020463 + AluSx SINE Alu 1 306 -6 1300 214 153 8 chr1 21174134 21174507 -261019157 + L1ME1 LINE L1 4618 5044 -1102 815 207 96 12 chr1 21175038 21175289 -261018375 + L1ME1 LINE L1 5012 5283 -863 425 252 54 0 chr1 21175312 21175423 -261018241 - FLAM_C SINE Alu -25 118 2 1039 164 53 0 chr1 21175423 21175594 -261018070 - AluJb SINE Alu -1 311 132 22 0 0 0 chr1 21175594 21175616 -261018048 + AT_rich Low_complexity Low_complexity 1 22 0 2326 218 35 21 chr1 21175643 21176221 -261017443 + L1ME1 LINE L1 5358 5943 -223 2269 99 3 0 chr1 21176291 21176585 -261017079 + AluSc SINE Alu 1 295 -14 1117 152 12 0 chr1 21176797 21176968 -261016696 - AluJb SINE Alu 0 312 140 2191 117 6 25 chr1 21177364 21177680 -261015984 - AluSx SINE Alu -2 310 1 958 193 6 0 chr1 21177898 21178064 -261015600 - AluJb SINE Alu -8 304 138 2370 101 3 0 chr1 21178118 21178414 -261015250 + AluSx SINE Alu 1 297 -15 2114 94 22 50 chr1 21178458 21178777 -261014887 - AluY SINE Alu -1 310 1 1902 144 0 0 chr1 21178869 21179139 -261014525 + AluSx SINE Alu 1 270 -42 314 288 82 60 chr1 21179646 21179830 -261013834 + L2 LINE L2 2615 2802 -512 247 286 169 79 chr1 21179921 21180110 -261013554 + L2 LINE L2 3044 3249 -23 535 197 181 48 chr1 21180241 21180429 -261013235 + MIR SINE MIR 2 214 -48 721 132 0 0 chr1 21180500 21180606 -261013058 - AluSg/x SINE Alu -8 304 199 261 198 0 0 chr1 21180774 21180855 -261012809 + (CA)n Simple_repeat Simple_repeat 2 82 0 1223 30 0 0 chr1 21180912 21181045 -261012619 - AluY SINE Alu -178 133 1 507 217 34 91 chr1 21181740 21181915 -261011749 - MIR SINE MIR -26 236 72 995 168 0 58 chr1 21182001 21182192 -261011472 - AluJb SINE Alu -12 300 121 2323 89 10 3 chr1 21182340 21182644 -261011020 - AluSx SINE Alu -6 306 1 208 195 24 0 chr1 21183158 21183199 -261010465 + MIR SINE MIR 20 61 -201 198 103 0 0 chr1 21184335 21184364 -261009300 + (TA)n Simple_repeat Simple_repeat 2 30 0 1695 171 10 55 chr1 21184541 21184712 -261008952 - AluJo SINE Alu -16 296 144 180 0 0 0 chr1 21184712 21184732 -261008932 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1695 171 10 55 chr1 21184732 21184870 -261008794 - AluJo SINE Alu -168 144 1 403 327 154 19 chr1 21184915 21185129 -261008535 - MIR SINE MIR -7 255 13 253 259 83 46 chr1 21187901 21188009 -261005655 + MIR SINE MIR 10 122 -86 2391 83 0 3 chr1 21189349 21189649 -261004015 - AluSc SINE Alu -10 299 1 1478 105 52 0 chr1 21190411 21190621 -261003043 - AluSg/x SINE Alu -4 306 86 2322 104 0 13 chr1 21190700 21191016 -261002648 - AluSx SINE Alu 0 312 1 475 225 169 0 chr1 21191429 21191589 -261002075 + MIR SINE MIR 2 188 -74 180 255 94 66 chr1 21191640 21191746 -261001918 - MIR SINE MIR -69 139 31 286 342 76 16 chr1 21192323 21192535 -261001129 - MIR SINE MIR -2 260 35 391 309 48 8 chr1 21193788 21193914 -260999750 - L2 LINE L2 -15 3257 3127 2253 97 13 3 chr1 21194495 21194803 -260998861 - AluSp SINE Alu -2 311 1 2470 90 0 0 chr1 21194830 21195130 -260998534 + AluSc SINE Alu 1 300 -9 266 313 12 0 chr1 21196631 21196711 -260996953 + MIR SINE MIR 31 111 -97 2130 138 0 0 chr1 21196725 21197022 -260996642 + AluJo SINE Alu 1 297 -15 315 0 0 0 chr1 21197023 21197058 -260996606 + (CA)n Simple_repeat Simple_repeat 1 35 0 424 308 101 6 chr1 21197421 21197580 -260996084 - MIR SINE MIR -87 175 2 2111 153 0 6 chr1 21197928 21198242 -260995422 - AluJb SINE Alu 0 312 1 1634 185 111 13 chr1 21198242 21198630 -260995034 - L1MC4 LINE L1 -879 7163 6734 312 27 0 0 chr1 21198680 21198717 -260994947 + (TG)n Simple_repeat Simple_repeat 1 37 0 310 177 65 0 chr1 21198724 21198786 -260994878 - L1MC4 LINE L1 -1481 6561 6496 943 0 0 0 chr1 21199035 21199139 -260994525 - L1PA3 LINE L1 -1 6154 6051 2291 120 0 0 chr1 21199139 21199440 -260994224 - AluSx SINE Alu -11 301 1 23 33 0 0 chr1 21199522 21199552 -260994112 + AT_rich Low_complexity Low_complexity 1 30 0 255 195 268 0 chr1 21199715 21199797 -260993867 + MIR3 SINE MIR 79 182 -26 250 304 199 12 chr1 21200331 21200502 -260993162 + L2 LINE L2 2602 2804 -510 864 238 22 30 chr1 21200537 21200768 -260992896 + MIR SINE MIR 8 236 -26 1102 252 52 14 chr1 21200793 21201083 -260992581 + L2 LINE L2 2657 2957 -357 2286 117 3 0 chr1 21201090 21201399 -260992265 - AluY SINE Alu -1 310 1 2360 113 0 0 chr1 21201483 21201785 -260991879 - AluSx SINE Alu -7 305 4 211 232 24 136 chr1 21201825 21201882 -260991782 + L2 LINE L2 2989 3027 -245 1821 108 56 70 chr1 21201882 21202073 -260991591 - AluSx SINE Alu 0 309 122 261 0 0 0 chr1 21202073 21202102 -260991562 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1821 108 56 70 chr1 21202102 21202223 -260991441 - AluSx SINE Alu -187 122 1 211 232 24 136 chr1 21202223 21202289 -260991375 + L2 LINE L2 3027 3099 -173 2272 93 10 0 chr1 21203046 21203337 -260990327 + AluSq SINE Alu 1 294 -19 2583 74 7 0 chr1 21203488 21203797 -260989867 + AluSq SINE Alu 1 311 -2 2619 62 0 0 chr1 21203797 21204104 -260989560 + AluY SINE Alu 1 307 -4 1958 151 0 32 chr1 21204450 21204787 -260988877 - AluJo SINE Alu 0 312 1 245 246 197 66 chr1 21205029 21205132 -260988532 + MIR SINE MIR 26 102 -106 2080 142 0 0 chr1 21205132 21205428 -260988236 + AluSx SINE Alu 1 296 -16 245 246 197 66 chr1 21205428 21205446 -260988218 + MIR SINE MIR 102 116 -92 * 471 301 80 5 chr1 21205434 21205647 -260988017 - MIR SINE MIR -1 261 33 257 260 0 14 chr1 21205695 21205768 -260987896 - MIR SINE MIR -14 248 177 1905 108 115 7 chr1 21205888 21206167 -260987497 - AluSg1 SINE Alu 0 309 1 21 36 0 0 chr1 21206172 21206200 -260987464 + AT_rich Low_complexity Low_complexity 1 28 0 2167 127 0 0 chr1 21206205 21206496 -260987168 - AluSx SINE Alu -21 291 1 523 261 25 8 chr1 21206601 21206720 -260986944 + L2 LINE L2 3193 3313 0 321 266 28 0 chr1 21206728 21206827 -260986837 - MIR SINE MIR -65 143 79 615 307 70 19 chr1 21207491 21207706 -260985958 + MIR SINE MIR 9 234 -28 241 204 0 12 chr1 21208154 21208214 -260985450 + MIR SINE MIR 77 135 -73 634 119 0 0 chr1 21208287 21208371 -260985293 - AluJo/FRAM SINE Alu -47 265 182 2296 89 0 17 chr1 21208373 21208708 -260984956 - AluSx SINE Alu 0 312 2 250 279 221 10 chr1 21208713 21208817 -260984847 + MIR SINE MIR 136 261 -1 2072 113 25 0 chr1 21208888 21209206 -260984458 + AluSq SINE Alu 2 326 0 214 298 228 9 chr1 21209206 21209320 -260984344 - L2 LINE L2 -5 3267 3129 28 71 0 0 chr1 21210535 21210591 -260983073 + GC_rich Low_complexity Low_complexity 1 56 0 33 107 0 0 chr1 21210711 21210842 -260982822 + GC_rich Low_complexity Low_complexity 1 131 0 22 80 0 0 chr1 21210964 21211014 -260982650 + GC_rich Low_complexity Low_complexity 1 50 0 21 57 0 0 chr1 21211226 21211261 -260982403 + GC_rich Low_complexity Low_complexity 1 35 0 200 241 46 11 chr1 21211417 21211504 -260982160 + (TCTCTG)n Simple_repeat Simple_repeat 2 91 0 180 217 313 35 chr1 21212699 21212814 -260980850 - MIR3 SINE MIR -26 182 36 595 249 96 20 chr1 21213454 21213612 -260980052 - MIR SINE MIR -11 251 74 1463 185 70 7 chr1 21213612 21213882 -260979782 + AluJo SINE Alu 25 311 -1 595 249 96 20 chr1 21213882 21213920 -260979744 - MIR SINE MIR -188 74 40 387 105 0 0 chr1 21214278 21214335 -260979329 + (TG)n Simple_repeat Simple_repeat 1 57 0 585 273 56 0 chr1 21215578 21215721 -260977943 + MIR SINE MIR 48 198 -64 300 184 0 126 chr1 21215738 21215775 -260977889 + MER7A DNA MER2_type 31 52 -2986 2325 85 3 0 chr1 21215775 21216085 -260977579 - AluSx SINE Alu 0 311 1 300 184 0 126 chr1 21216085 21216133 -260977531 + MER7A DNA MER2_type 52 104 -242 1583 186 4 0 chr1 21216140 21216388 -260977276 - AluJo SINE Alu -63 249 1 944 28 0 0 chr1 21216397 21216526 -260977138 - AluY SINE Alu 0 304 176 938 169 141 0 chr1 21216529 21216713 -260976951 + MER7A DNA MER2_type 126 335 -1 313 316 95 25 chr1 21217492 21217650 -260976014 - MIR SINE MIR -71 191 23 309 68 0 0 chr1 21218064 21218108 -260975556 + (TCCC)n Simple_repeat Simple_repeat 3 46 0 1300 181 28 87 chr1 21218123 21218327 -260975337 - AluJo SINE Alu -10 302 122 234 0 0 0 chr1 21218327 21218353 -260975311 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 1300 181 28 87 chr1 21218353 21218469 -260975195 - AluJo SINE Alu -190 122 1 2326 100 0 0 chr1 21219132 21219421 -260974243 + AluSx SINE Alu 1 289 -23 2587 47 3 0 chr1 21219432 21219733 -260973931 + AluY SINE Alu 1 302 -9 197 281 31 47 chr1 21219972 21220036 -260973628 - MER5A DNA MER1_type -110 79 17 * 198 271 21 0 chr1 21219990 21220038 -260973626 + MER5A DNA MER1_type 141 189 0 1945 135 30 7 chr1 21220554 21220851 -260972813 + AluJb SINE Alu 1 304 -8 398 211 122 48 chr1 21221023 21221170 -260972494 - MIR SINE MIR -42 220 63 * 569 273 86 43 chr1 21221164 21221398 -260972266 - MIR SINE MIR 0 262 4 443 338 76 69 chr1 21222095 21222624 -260971040 + L2 LINE L2 2719 3252 -20 191 167 24 0 chr1 21222624 21222666 -260970998 + GA-rich Low_complexity Low_complexity 4 46 0 327 291 10 92 chr1 21222685 21222891 -260970773 - L2 LINE L2 -162 3110 2922 216 97 0 0 chr1 21223452 21223483 -260970181 + (CCCCCA)n Simple_repeat Simple_repeat 4 34 0 384 293 100 0 chr1 21225336 21225486 -260968178 - MIR SINE MIR -70 192 28 209 356 58 0 chr1 21225509 21225613 -260968051 - MIR SINE MIR -69 193 84 1755 139 87 7 chr1 21225729 21226017 -260967647 + AluJb SINE Alu 1 311 -1 279 250 47 0 chr1 21226017 21226081 -260967583 + polypurine Low_complexity Low_complexity 2 68 0 2398 75 0 0 chr1 21226508 21226815 -260966849 - AluSc SINE Alu -2 307 1 740 296 18 22 chr1 21226958 21227181 -260966483 + MIR SINE MIR 41 262 0 395 152 202 30 chr1 21227243 21227342 -260966322 - L2 LINE L2 0 3313 3198 2292 60 0 3 chr1 21227606 21227924 -260965740 - AluY SINE Alu 0 317 1 1730 167 7 10 chr1 21228017 21228317 -260965347 + AluJo SINE Alu 1 299 -13 23 0 0 0 chr1 21228378 21228401 -260965263 + AT_rich Low_complexity Low_complexity 1 23 0 800 179 51 66 chr1 21228474 21228670 -260964994 - AluJo SINE Alu -5 307 115 264 244 47 23 chr1 21228817 21228903 -260964761 - MIR SINE MIR -147 115 28 2247 106 3 0 chr1 21229036 21229347 -260964317 - AluSq SINE Alu -1 312 1 423 306 33 30 chr1 21229390 21229567 -260964097 - MIR SINE MIR -69 139 16 358 244 22 67 chr1 21229787 21229922 -260963742 + MIR3 SINE MIR 34 162 -46 404 254 17 102 chr1 21230053 21230108 -260963556 + L2 LINE L2 3098 3156 -157 2353 77 6 6 chr1 21230108 21230419 -260963245 - AluSx SINE Alu -1 311 1 404 254 17 102 chr1 21230419 21230599 -260963065 + L2 LINE L2 3156 3313 0 308 227 2 29 chr1 21230901 21230977 -260962687 - MIR SINE MIR -63 145 79 28 0 0 0 chr1 21231366 21231394 -260962270 + GC_rich Low_complexity Low_complexity 1 28 0 21 95 0 0 chr1 21232214 21232277 -260961387 + GC_rich Low_complexity Low_complexity 1 63 0 1021 297 205 27 chr1 21233017 21233827 -260959837 + L2 LINE L2 2251 3235 -78 1752 111 0 0 chr1 21233830 21234074 -260959590 - AluSg/x SINE Alu 0 310 67 516 147 0 73 chr1 21234666 21234775 -260958889 - FRAM SINE Alu -1 175 75 525 174 87 0 chr1 21234801 21234893 -260958771 - FRAM SINE Alu -57 119 20 606 181 164 0 chr1 21235024 21235140 -260958524 - FLAM_A SINE Alu -7 135 1 975 255 79 34 chr1 21235143 21235523 -260958141 + MER113 DNA MER1_type? 82 478 -43 588 250 122 0 chr1 21235745 21235909 -260957755 - MIR SINE MIR -8 254 71 480 280 152 5 chr1 21235976 21236187 -260957477 + L2 LINE L2 1994 2235 -1079 1309 80 0 0 chr1 21236199 21236362 -260957302 - AluSx SINE Alu -149 163 1 1031 320 59 29 chr1 21236477 21236881 -260956783 + L2 LINE L2 2806 3229 -84 2003 142 7 3 chr1 21236881 21237190 -260956474 - AluSx SINE Alu -2 310 1 1031 320 59 29 chr1 21237190 21237275 -260956389 + L2 LINE L2 3229 3310 -3 330 308 77 8 chr1 21237395 21237525 -260956139 - L2 LINE L2 0 3272 3134 246 369 0 13 chr1 21238607 21238776 -260954888 + CT-rich Low_complexity Low_complexity 1 166 0 501 321 160 9 chr1 21238956 21239181 -260954483 + MIR SINE MIR 3 257 -5 1193 161 5 19 chr1 21239182 21239387 -260954277 + AluJo SINE Alu 9 210 -102 1023 239 40 0 chr1 21239575 21239822 -260953842 - MIR SINE MIR 0 262 6 2073 80 40 0 chr1 21239853 21240151 -260953513 + AluSp SINE Alu 1 309 0 2107 142 0 3 chr1 21240285 21240594 -260953070 - AluJb SINE Alu -4 308 1 504 256 77 53 chr1 21240672 21240826 -260952838 - L1ME4a LINE L1 -188 5933 5769 2175 128 3 0 chr1 21240826 21241132 -260952532 - AluSx SINE Alu -5 307 1 504 256 77 53 chr1 21241132 21241223 -260952441 - L1ME4a LINE L1 -352 5769 5682 562 282 144 6 chr1 21241595 21241776 -260951888 + MIR SINE MIR 56 261 -1 208 196 4 122 chr1 21241794 21241889 -260951775 + MIR SINE MIR 47 135 -73 485 308 154 18 chr1 21242584 21242811 -260950853 - MIR SINE MIR -4 258 1 216 0 0 0 chr1 21243645 21243669 -260949995 + (TG)n Simple_repeat Simple_repeat 1 24 0 2112 106 0 3 chr1 21244182 21244466 -260949198 - AluSx SINE Alu -29 283 1 324 390 0 0 chr1 21244766 21244943 -260948721 + (CTAGGG)n Simple_repeat Simple_repeat 1 177 0 436 240 182 19 chr1 21246190 21246344 -260947320 + MER5A DNA MER1_type 4 182 -7 514 343 50 6 chr1 21246443 21246624 -260947040 + MIR SINE MIR 30 218 -44 354 320 40 0 chr1 21247464 21247589 -260946075 + MIR3 SINE MIR 30 159 -49 2121 116 7 3 chr1 21247647 21247948 -260945716 + AluSx SINE Alu 1 302 -10 1572 114 87 24 chr1 21247948 21248200 -260945464 - AluJo SINE Alu -30 282 13 187 296 0 0 chr1 21248318 21248362 -260945302 + MIR SINE MIR 104 147 -61 745 306 53 33 chr1 21248435 21248680 -260944984 + MIR SINE MIR 13 262 0 308 256 124 16 chr1 21248801 21248922 -260944742 - MER91C DNA MER1_type -6 134 1 2133 96 33 3 chr1 21250185 21250487 -260943177 - AluSx SINE Alu 0 312 2 225 0 0 0 chr1 21250490 21250515 -260943149 + (T)n Simple_repeat Simple_repeat 1 25 0 1602 167 25 0 chr1 21250577 21250852 -260942812 - AluJo SINE Alu -30 282 1 417 259 0 61 chr1 21250882 21251013 -260942651 + MIR SINE MIR 63 185 -77 1067 273 99 5 chr1 21251051 21251465 -260942199 + MLT1J LTR MaLR 5 457 -54 2033 143 0 3 chr1 21251469 21251776 -260941888 + AluJb SINE Alu 1 306 -6 189 206 0 0 chr1 21251954 21251988 -260941676 + L2 LINE L2 3261 3294 -19 512 200 0 75 chr1 21252045 21252133 -260941531 - MIR SINE MIR -132 130 52 2289 78 0 44 chr1 21252133 21252453 -260941211 - AluY SINE Alu -5 306 1 512 200 0 75 chr1 21252453 21252484 -260941180 - MIR SINE MIR -210 52 20 298 310 83 30 chr1 21252483 21252647 -260941017 - MIR3 SINE MIR -11 197 22 * 336 293 66 48 chr1 21253121 21253288 -260940376 + MIR3 SINE MIR 2 171 -37 2175 125 0 3 chr1 21253366 21253679 -260939985 - AluSx SINE Alu 0 312 1 731 194 0 15 chr1 21253679 21253813 -260939851 - AluJo/FLAM SINE Alu -180 132 1 241 281 125 10 chr1 21253849 21253945 -260939719 + MIR SINE MIR 150 256 -6 382 179 0 0 chr1 21254002 21254069 -260939595 - MLT1J LTR MaLR -198 313 247 207 331 105 41 chr1 21254559 21254731 -260938933 + L2 LINE L2 3040 3222 -50 390 246 127 14 chr1 21254886 21255028 -260938636 + MIR SINE MIR 89 246 -16 240 284 239 0 chr1 21255078 21255212 -260938452 + MIR SINE MIR 43 208 -54 694 146 7 49 chr1 21255932 21256076 -260937588 - MIR SINE MIR -119 143 6 754 188 6 29 chr1 21256292 21256462 -260937202 + LTR28 LTR ERV1 1 166 -854 * 1573 199 9 18 chr1 21256460 21257071 -260936593 + LTR28 LTR ERV1 300 1015 -5 238 202 53 85 chr1 21257195 21257289 -260936375 + MIR SINE MIR 117 207 -55 2384 86 0 0 chr1 21257291 21257594 -260936070 - AluY SINE Alu -8 303 1 2197 123 45 31 chr1 21258173 21258532 -260935132 + THE1B LTR MaLR 1 364 0 374 232 126 0 chr1 21258758 21258853 -260934811 + MIR SINE MIR 47 153 -109 2079 95 0 56 chr1 21258874 21259203 -260934461 + AluSq SINE Alu 1 312 0 2015 138 26 3 chr1 21259316 21259621 -260934043 + AluJb SINE Alu 1 312 0 2112 124 16 0 chr1 21259627 21259934 -260933730 + AluSx SINE Alu 1 312 0 303 252 95 54 chr1 21260025 21260172 -260933492 - MER5A DNA MER1_type -8 177 18 1825 173 0 0 chr1 21260433 21260728 -260932936 - AluJb SINE Alu -17 295 1 312 89 10 0 chr1 21310844 21310899 -260882765 - Alu SINE Alu -258 42 1 452 273 91 32 chr1 21310999 21311153 -260882511 + MIR3 SINE MIR 35 197 -11 669 110 0 0 chr1 21311640 21311740 -260881924 + (TTTC)n Simple_repeat Simple_repeat 3 102 0 2084 115 7 3 chr1 21311742 21312030 -260881634 - AluSg1 SINE Alu -20 289 1 259 320 131 48 chr1 21312230 21312436 -260881228 - MIR SINE MIR -21 241 19 2073 152 0 9 chr1 21312602 21312917 -260880747 + AluSx SINE Alu 1 312 0 753 93 0 0 chr1 21312978 21313085 -260880579 + (CCA)n Simple_repeat Simple_repeat 1 107 0 2263 125 27 29 chr1 21313190 21313566 -260880098 + THE1C LTR MaLR 1 375 0 1942 157 0 27 chr1 21313631 21313931 -260879733 + AluJb SINE Alu 1 292 -20 2279 105 0 0 chr1 21313939 21314233 -260879431 + AluY SINE Alu 1 294 -17 520 316 87 0 chr1 21315481 21315699 -260877965 - MIR SINE MIR -5 257 21 2033 78 0 0 chr1 21315911 21316181 -260877483 - MER41A LTR ERV1 -1 553 284 419 130 0 39 chr1 21316185 21316262 -260877402 + Alu SINE Alu 238 311 -1 4743 75 30 3 chr1 21316263 21316929 -260876735 - HUERS-P1 LTR ERV1 -3068 3195 2512 233 272 244 64 chr1 21317030 21317259 -260876405 + L2 LINE L2 2850 3036 -277 1926 122 73 7 chr1 21317259 21317545 -260876119 + AluSg SINE Alu 2 306 -4 233 272 244 64 chr1 21317545 21317708 -260875956 + L2 LINE L2 3036 3313 0 228 222 56 0 chr1 21318154 21318208 -260875456 - MIR SINE MIR -50 212 156 278 297 135 20 chr1 21318369 21318517 -260875147 + MIR SINE MIR 19 183 -79 334 305 8 31 chr1 21318521 21318649 -260875015 - L2 LINE L2 -4 3309 3185 2434 79 0 3 chr1 21318651 21318956 -260874708 + AluSx SINE Alu 7 310 -2 23 0 0 0 chr1 21319566 21319589 -260874075 + GC_rich Low_complexity Low_complexity 1 23 0 220 147 0 29 chr1 21319640 21319708 -260873956 + (CGGGG)n Simple_repeat Simple_repeat 2 67 0 5255 83 21 3 chr1 21320060 21321128 -260872536 - L1PA10 LINE L1 -187 5981 4894 2139 132 0 10 chr1 21321130 21321434 -260872230 - AluJb SINE Alu -11 301 1 364 247 29 65 chr1 21321594 21321764 -260871900 - L1ME4a LINE L1 -1 6120 5957 1869 145 0 24 chr1 21321774 21322085 -260871579 - AluSx SINE Alu 0 304 1 1717 75 0 0 chr1 21322100 21322312 -260871352 - AluY SINE Alu 0 311 100 973 183 61 19 chr1 21322551 21322766 -260870898 - MIR SINE MIR -21 241 20 570 284 147 0 chr1 21322981 21323206 -260870458 - MIR SINE MIR -3 259 2 589 228 44 13 chr1 21323265 21323423 -260870241 - MIR SINE MIR -12 250 88 1347 271 17 3 chr1 21323428 21323790 -260869874 + LTR16A LTR ERVL 22 388 -62 2265 117 7 3 chr1 21323852 21324160 -260869504 - AluSx SINE Alu -3 309 1 299 254 73 85 chr1 21324492 21324669 -260868995 + L1ME4a LINE L1 5947 6121 0 557 205 71 0 chr1 21324711 21324838 -260868826 - MER63 DNA MER1_type -273 789 28 2283 94 13 13 chr1 21324897 21325195 -260868469 + AluSq SINE Alu 1 298 -15 254 122 0 0 chr1 21325195 21325244 -260868420 + L1MB4 LINE L1 6132 6180 0 2279 123 0 0 chr1 21325276 21325578 -260868086 + AluSx SINE Alu 1 302 -10 304 302 39 73 chr1 21325582 21325761 -260867903 - L1MC4 LINE L1 -44 7998 7826 266 189 4 0 chr1 21325794 21325848 -260867816 - L1ME2 LINE L1 0 6162 6107 656 191 254 10 chr1 21325848 21326057 -260867607 + L2 LINE L2 1817 2076 -1238 * 2393 283 135 15 chr1 21326055 21326202 -260867462 - L2 LINE L2 -1959 1355 1227 1443 201 28 18 chr1 21326202 21326485 -260867179 + AluJo SINE Alu 1 286 -26 2393 283 135 15 chr1 21326485 21327008 -260866656 - L2 LINE L2 -2087 1227 768 1924 145 3 30 chr1 21327008 21327311 -260866353 + AluSx SINE Alu 3 297 -15 2393 283 135 15 chr1 21327311 21327742 -260865922 - L2 LINE L2 -2546 768 121 354 306 69 14 chr1 21328012 21328156 -260865508 - MIR SINE MIR -12 250 99 369 215 0 74 chr1 21328261 21328382 -260865282 + MLT1K LTR MaLR 470 581 -7 2433 107 0 0 chr1 21328969 21329277 -260864387 - AluSg SINE Alu -2 308 1 834 155 16 0 chr1 21329277 21329406 -260864258 - AluJo/FLAM SINE Alu -171 131 1 795 64 0 0 chr1 21329564 21329673 -260863991 - L1PA14 LINE L1 -336 5825 5717 541 219 180 22 chr1 21329717 21329900 -260863764 - L2 LINE L2 -504 2810 2599 198 97 32 0 chr1 21329906 21329937 -260863727 - L2 LINE L2 -18 3295 3264 356 291 8 45 chr1 21329949 21330083 -260863581 + MER5A DNA MER1_type 60 188 -1 684 236 79 2 chr1 21330162 21330348 -260863316 - MIR SINE MIR -45 217 23 2231 126 0 0 chr1 21330899 21331200 -260862464 - AluSx SINE Alu -11 301 1 795 213 121 36 chr1 21331329 21331634 -260862030 - MER113 DNA MER1_type? -3 518 188 789 160 94 90 chr1 21331634 21331878 -260861786 - L1MD3 LINE L1 -22 7973 7729 1993 147 3 7 chr1 21331879 21332179 -260861485 - AluJb SINE Alu -13 299 1 248 351 106 10 chr1 21332203 21332411 -260861253 - L2 LINE L2 -454 2860 2633 2176 96 50 0 chr1 21332516 21332798 -260860866 + AluSc SINE Alu 1 296 -13 378 275 78 82 chr1 21332865 21332992 -260860672 - L1ME3A LINE L1 -1 6161 6036 1668 185 10 24 chr1 21332992 21333289 -260860375 + AluJo SINE Alu 7 299 -13 378 275 78 82 chr1 21333289 21333407 -260860257 - L1ME3A LINE L1 -126 6036 5919 201 319 102 69 chr1 21333520 21333684 -260859980 - MIR SINE MIR -20 242 68 2167 131 0 22 chr1 21333684 21333998 -260859666 - AluSx SINE Alu -5 307 1 201 319 102 69 chr1 21333998 21334049 -260859615 - MIR SINE MIR -194 68 20 331 229 48 185 chr1 21334125 21334417 -260859247 + MIR SINE MIR 9 260 -2 253 252 24 24 chr1 21334875 21334998 -260858666 - LTR67 LTR ERVL 0 557 435 1578 103 0 0 chr1 21335136 21335350 -260858314 + Charlie3 DNA MER1_type 50 263 -2447 255 236 0 0 chr1 21335398 21335453 -260858211 + L2 LINE L2 3218 3272 0 2331 108 0 6 chr1 21335482 21335796 -260857868 - AluSx SINE Alu 0 312 1 660 306 102 0 chr1 21336327 21336562 -260857102 + MIR SINE MIR 4 262 0 399 267 168 12 chr1 21336713 21336874 -260856790 - MIR SINE MIR -46 216 31 308 245 102 0 chr1 21337181 21337279 -260856385 - MIR SINE MIR -119 143 36 2252 127 0 13 chr1 21337753 21338069 -260855595 - AluSx SINE Alu 0 312 1 692 261 66 46 chr1 21338245 21338472 -260855192 + MIR SINE MIR 18 248 -14 494 69 46 35 chr1 21341139 21341226 -260852438 - Alu SINE Alu -2 309 222 626 121 0 10 chr1 21342317 21342416 -260851248 + MER4A LTR ERV1 1 98 -566 1597 120 17 80 chr1 21342416 21342773 -260850891 + MER4A LTR ERV1 261 653 -11 1115 308 70 34 chr1 21342842 21343400 -260850264 + MLT1K LTR MaLR 11 588 0 1791 124 94 8 chr1 21343700 21343967 -260849697 - AluSx SINE Alu -22 290 1 376 236 0 45 chr1 21344295 21344405 -260849259 + MIR SINE MIR 39 143 -119 1875 144 4 0 chr1 21344406 21344684 -260848980 + AluJb SINE Alu 1 279 -33 200 86 29 0 chr1 21344687 21344722 -260848942 + (TAAAA)n Simple_repeat Simple_repeat 1 36 0 198 0 0 0 chr1 21345657 21345679 -260847985 + (CCCCCA)n Simple_repeat Simple_repeat 3 24 0 300 239 54 22 chr1 21345886 21345978 -260847686 + MIR SINE MIR 49 143 -65 2175 118 0 13 chr1 21346091 21346397 -260847267 - AluSq SINE Alu -11 302 1 523 286 66 59 chr1 21346437 21346571 -260847093 - L1ME4a LINE L1 -15 6106 5974 2399 102 0 3 chr1 21346571 21346884 -260846780 - AluSq SINE Alu -1 312 1 523 286 66 59 chr1 21346884 21347189 -260846475 - L1ME4a LINE L1 -147 5974 5664 564 224 77 13 chr1 21348218 21348374 -260845290 - MER103 DNA DNA 0 166 1 2030 157 3 0 chr1 21348943 21349242 -260844422 - AluSx SINE Alu -12 300 1 277 225 18 107 chr1 21349391 21349479 -260844185 + L1MC/D LINE L1 5727 5794 -2014 683 194 23 8 chr1 21349479 21349608 -260844056 + L1PA8A LINE L1 6001 6131 0 277 225 18 107 chr1 21349608 21349688 -260843976 + L1MC/D LINE L1 5794 5880 -1928 664 203 0 0 chr1 21349790 21349908 -260843756 - FRAM SINE Alu -11 165 48 22 25 0 25 chr1 21350055 21350074 -260843590 + AT_rich Low_complexity Low_complexity 1 19 -20 2275 107 0 3 chr1 21350074 21350374 -260843290 - AluSq SINE Alu -13 300 2 22 25 0 25 chr1 21350374 21350394 -260843270 + AT_rich Low_complexity Low_complexity 19 39 0 946 125 0 22 chr1 21350397 21350533 -260843131 - FLAM_C SINE Alu 0 133 1 2317 114 3 0 chr1 21350854 21351162 -260842502 - AluSq SINE Alu -4 309 1 561 208 0 0 chr1 21351170 21351271 -260842393 - FLAM_C SINE Alu -11 132 32 6610 242 41 38 chr1 21351272 21351974 -260841690 - L1M4 LINE L1 -3399 3245 2547 180 77 0 0 chr1 21351984 21352010 -260841654 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 1632 203 0 3 chr1 21352010 21352295 -260841369 - AluSq SINE Alu -26 287 2 6610 242 41 38 chr1 21352295 21352369 -260841295 - L1M4 LINE L1 -4097 2547 2475 2318 88 7 13 chr1 21352369 21352674 -260840990 - AluSq SINE Alu -10 303 1 6610 242 41 38 chr1 21352674 21353156 -260840508 - L1M4 LINE L1 -4169 2475 1996 2304 120 3 0 chr1 21353156 21353464 -260840200 - AluSp SINE Alu -4 309 1 2324 116 3 0 chr1 21353466 21353777 -260839887 - AluSx SINE Alu 0 312 1 6610 242 41 38 chr1 21353777 21354461 -260839203 - L1M4 LINE L1 -4648 1996 1316 1505 216 0 10 chr1 21354461 21354767 -260838897 - AluY SINE Alu -8 303 1 6610 242 41 38 chr1 21354767 21356038 -260837626 - L1M4 LINE L1 -5328 1316 14 1509 203 14 3 chr1 21356059 21356350 -260837314 - L2 LINE L2 -629 2685 2392 2935 178 42 51 chr1 21356350 21356551 -260837113 + L1MC/D LINE L1 4946 5147 -1186 2296 109 3 3 chr1 21356551 21356863 -260836801 + AluSx SINE Alu 1 312 0 2935 178 42 51 chr1 21356863 21357038 -260836626 + L1MC/D LINE L1 5147 5322 -1011 2216 104 0 7 chr1 21357038 21357351 -260836313 + AluSx SINE Alu 1 311 0 2935 178 42 51 chr1 21357351 21357750 -260835914 + L1MC/D LINE L1 5322 5727 -606 478 318 58 12 chr1 21358487 21358660 -260835004 + MIR SINE MIR 25 205 -57 1140 274 31 0 chr1 21358660 21358952 -260834712 + AluSq SINE Alu 3 303 0 519 341 46 40 chr1 21359083 21359385 -260834279 - L1MC/D LINE L1 -2238 5570 5267 285 259 28 0 chr1 21359397 21359505 -260834159 - Charlie5 DNA MER1_type -31 2581 2471 867 306 13 10 chr1 21359505 21359806 -260833858 + AluSx SINE Alu 1 302 0 22 0 0 0 chr1 21359818 21359840 -260833824 + AT_rich Low_complexity Low_complexity 1 22 0 1216 241 19 29 chr1 21360403 21360714 -260832950 + AluSg SINE Alu 3 310 0 696 145 0 0 chr1 21360728 21360845 -260832819 + (GAAAA)n Simple_repeat Simple_repeat 4 120 0 240 324 28 0 chr1 21361299 21361370 -260832294 - MIR SINE MIR -33 229 157 530 213 107 0 chr1 21361570 21361692 -260831972 + L2 LINE L2 3179 3313 0 182 306 14 56 chr1 21361776 21361848 -260831816 + MIR SINE MIR 32 100 -108 440 231 65 0 chr1 21361910 21362018 -260831646 + MIR SINE MIR 27 141 -121 325 323 150 35 chr1 21362610 21362836 -260830828 - MIR SINE MIR -3 259 8 1658 157 27 4 chr1 21363476 21363737 -260829927 - AluJo SINE Alu -36 276 10 858 160 0 0 chr1 21363887 21364018 -260829646 + FLAM_C SINE Alu 1 131 -2 2240 102 0 3 chr1 21364262 21364556 -260829108 + AluSx SINE Alu 1 293 -19 195 167 0 0 chr1 21364736 21364766 -260828898 - MIR SINE MIR -17 245 216 * 336 230 27 0 chr1 21364740 21364814 -260828850 - L2 LINE L2 -27 3245 3170 199 234 16 47 chr1 21364834 21364898 -260828766 - MER5B DNA MER1_type -14 164 103 848 246 91 0 chr1 21365078 21365298 -260828366 + MIR SINE MIR 1 240 -22 185 239 204 0 chr1 21365361 21365449 -260828215 - L2 LINE L2 -221 3051 2946 216 253 0 0 chr1 21365620 21365695 -260827969 + (TG)n Simple_repeat Simple_repeat 1 75 0 695 260 91 0 chr1 21366013 21366221 -260827443 + MIR SINE MIR 3 229 -33 259 362 71 0 chr1 21366296 21366423 -260827241 - L2 LINE L2 -21 3251 3116 356 259 92 38 chr1 21366547 21366678 -260826986 - MIR SINE MIR -78 184 47 2127 115 0 7 chr1 21367230 21367525 -260826139 + AluSx SINE Alu 1 293 -19 195 167 0 0 chr1 21367705 21367735 -260825929 - MIR SINE MIR -17 245 216 * 336 230 27 0 chr1 21367709 21367783 -260825881 - L2 LINE L2 -27 3245 3170 199 234 16 47 chr1 21367803 21367867 -260825797 - MER5B DNA MER1_type -14 164 103 848 246 91 0 chr1 21368047 21368267 -260825397 + MIR SINE MIR 1 240 -22 185 239 204 0 chr1 21368330 21368418 -260825246 - L2 LINE L2 -221 3051 2946 216 253 0 0 chr1 21368589 21368664 -260825000 + (TG)n Simple_repeat Simple_repeat 1 75 0 695 260 91 0 chr1 21368980 21369188 -260824476 + MIR SINE MIR 3 229 -33 259 362 71 0 chr1 21369263 21369390 -260824274 - L2 LINE L2 -21 3251 3116 530 219 24 14 chr1 21369507 21369678 -260823986 - MIR SINE MIR -71 191 15 234 315 34 0 chr1 21370325 21370414 -260823250 + MLT1H1 LTR MaLR 457 548 -7 * 1762 129 0 0 chr1 21370412 21370668 -260822996 - THE1B LTR MaLR -108 256 1 813 213 195 46 chr1 21371016 21371344 -260822320 + MLT1C LTR MaLR 8 384 -83 341 277 85 0 chr1 21372528 21372658 -260821006 + MLT1J LTR MaLR 12 152 -359 500 190 50 0 chr1 21372700 21372800 -260820864 + MLT1C LTR MaLR 401 505 0 302 203 16 0 chr1 21372824 21372888 -260820776 + MLT1J LTR MaLR 410 474 -37 858 202 45 17 chr1 21372984 21373162 -260820502 + MLT1J LTR MaLR 3 185 -326 589 204 132 0 chr1 21373249 21373401 -260820263 + MLT1J LTR MaLR 333 504 -7 345 299 201 33 chr1 21374422 21374696 -260818968 + MLT1H LTR MaLR 20 339 -210 263 178 0 0 chr1 21374770 21374815 -260818849 + MLT1H LTR MaLR 501 545 -4 205 365 56 0 chr1 21374822 21374929 -260818735 + L2 LINE L2 3117 3229 -43 478 259 16 65 chr1 21375365 21375550 -260818114 + MIR SINE MIR 36 211 -51 2430 90 6 6 chr1 21375973 21376284 -260817380 - AluSq SINE Alu -1 312 2 226 344 145 33 chr1 21376366 21376607 -260817057 + L2 LINE L2 2985 3252 -20 387 324 78 6 chr1 21376869 21377048 -260816616 + MIR SINE MIR 20 211 -51 2164 88 0 0 chr1 21377052 21377326 -260816338 + AluSc SINE Alu 36 309 0 569 295 58 5 chr1 21377373 21377563 -260816101 + MIR SINE MIR 15 214 -48 412 289 35 0 chr1 21378629 21378743 -260814921 - MIR SINE MIR -70 192 75 * 512 295 202 14 chr1 21378739 21379201 -260814463 + L2 LINE L2 2702 3244 -28 582 244 0 0 chr1 21379236 21379408 -260814256 + (TGGA)n Simple_repeat Simple_repeat 1 172 0 486 262 0 0 chr1 21379446 21379595 -260814069 + (TGGA)n Simple_repeat Simple_repeat 3 151 0 285 184 0 0 chr1 21379628 21379677 -260813987 + MIR SINE MIR 98 146 -62 2607 66 0 0 chr1 21380890 21381193 -260812471 + AluY SINE Alu 1 303 -8 251 268 82 41 chr1 21382381 21382478 -260811186 + MIR SINE MIR 143 243 -19 309 186 35 70 chr1 21382511 21382597 -260811067 + MIR SINE MIR 107 189 -73 2162 128 3 0 chr1 21382790 21383071 -260810593 + AluSx SINE Alu 1 285 -27 294 29 0 0 chr1 21383071 21383106 -260810558 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 2162 128 3 0 chr1 21383106 21383129 -260810535 + AluSx SINE Alu 285 306 -6 1076 264 63 63 chr1 21383460 21383608 -260810056 + MLT1I LTR MaLR 1 148 -261 2022 164 0 0 chr1 21383608 21383913 -260809751 - AluJb SINE Alu -5 307 3 1076 264 63 63 chr1 21383913 21384162 -260809502 + MLT1I LTR MaLR 147 398 -11 448 275 96 11 chr1 21384177 21384355 -260809309 + MIR SINE MIR 70 262 0 181 276 129 103 chr1 21384601 21384717 -260808947 + MIR SINE MIR 25 143 -65 262 304 27 27 chr1 21385001 21385149 -260808515 + L2 LINE L2 2962 3109 -163 370 226 233 44 chr1 21385169 21385328 -260808336 + MER5A DNA MER1_type 1 189 0 1819 148 3 31 chr1 21385563 21385853 -260807811 + AluJb SINE Alu 1 282 -30 2503 71 0 0 chr1 21386014 21386309 -260807355 + AluY SINE Alu 1 295 -16 259 303 275 0 chr1 21387005 21387147 -260806517 + MIR SINE MIR 68 248 -14 2519 78 0 25 chr1 21387187 21387507 -260806157 - AluSq SINE Alu -1 312 1 534 268 93 21 chr1 21387544 21387738 -260805926 - MIR SINE MIR -11 251 44 385 304 42 65 chr1 21387827 21387995 -260805669 - MIR3 SINE MIR -7 201 38 850 259 15 10 chr1 21388188 21388389 -260805275 - MIR SINE MIR 0 262 61 535 360 30 5 chr1 21389057 21389257 -260804407 - MIR SINE MIR -11 251 47 421 253 25 86 chr1 21389319 21389367 -260804297 - MIR3 SINE MIR -15 193 144 2009 114 40 4 chr1 21389367 21389661 -260804003 - AluSx SINE Alu 0 305 2 421 253 25 86 chr1 21389661 21389773 -260803891 - MIR3 SINE MIR -64 144 42 2038 135 7 14 chr1 21390212 21390509 -260803155 + AluJb SINE Alu 1 295 -17 777 279 83 53 chr1 21390519 21390919 -260802745 + L1ME4a LINE L1 5444 5856 -265 720 184 0 15 chr1 21390965 21391101 -260802563 + FLAM_A SINE Alu 8 141 -1 1343 83 0 39 chr1 21391275 21391456 -260802208 + AluSq SINE Alu 20 193 -120 1698 169 219 0 chr1 21391472 21391832 -260801832 - MLT1D LTR MaLR -55 450 12 194 252 269 0 chr1 21391950 21392069 -260801595 + L2 LINE L2 3162 3312 -1 207 277 0 46 chr1 21392250 21392315 -260801349 + MER5A DNA MER1_type 21 82 -107 2417 92 0 22 chr1 21393060 21393377 -260800287 + AluSx SINE Alu 1 310 -2 1055 296 154 11 chr1 21393380 21394166 -260799498 + L2 LINE L2 2420 3305 -8 909 120 0 8 chr1 21394412 21394537 -260799127 - FLAM_A SINE Alu -8 134 11 244 235 0 0 chr1 21394566 21394617 -260799047 + L2 LINE L2 3006 3056 -257 1013 185 12 18 chr1 21394664 21394915 -260798749 - AluJb SINE Alu -9 303 1 236 269 119 62 chr1 21394922 21395082 -260798582 + L2 LINE L2 3132 3300 -13 445 323 90 27 chr1 21395242 21395465 -260798199 - MIR SINE MIR -14 248 12 424 264 110 52 chr1 21395870 21396025 -260797639 - MER5A DNA MER1_type 0 189 26 472 307 23 17 chr1 21396219 21396395 -260797269 - MIR SINE MIR -76 186 10 240 292 47 64 chr1 21396841 21397012 -260796652 - MER20B DNA MER1_type -615 168 1 563 312 13 39 chr1 21397197 21397316 -260796348 + MIR SINE MIR 38 150 -112 2207 113 3 10 chr1 21397316 21397625 -260796039 - AluSx SINE Alu -5 307 1 563 312 13 39 chr1 21397625 21397736 -260795928 + MIR SINE MIR 150 262 0 701 267 75 33 chr1 21398461 21398701 -260794963 + MIR SINE MIR 11 260 -2 212 286 14 29 chr1 21398705 21398775 -260794889 + L2 LINE L2 3203 3271 -1 2233 62 79 17 chr1 21398825 21399116 -260794548 + AluSp SINE Alu 1 309 -4 212 290 60 30 chr1 21399432 21399532 -260794132 + MIR SINE MIR 64 166 -96 784 196 48 48 chr1 21399667 21399856 -260793808 + MER20 DNA MER1_type 24 212 -7 281 324 57 0 chr1 21400420 21400525 -260793139 - L2 LINE L2 -5 3308 3198 388 266 62 16 chr1 21400654 21400782 -260792882 - MIR3 SINE MIR -39 169 36 528 264 31 12 chr1 21400820 21400983 -260792681 - MIR SINE MIR -9 253 88 323 239 76 0 chr1 21401077 21401169 -260792495 + MIR3 SINE MIR 89 187 -21 538 282 105 6 chr1 21401419 21401600 -260792064 + MIR SINE MIR 61 259 -3 408 207 30 52 chr1 21401922 21402057 -260791607 + MIR SINE MIR 19 150 -58 2372 106 0 3 chr1 21402058 21402361 -260791303 + AluSq SINE Alu 2 303 -10 352 248 68 17 chr1 21403027 21403144 -260790520 - MER5A DNA MER1_type -59 130 8 228 208 19 0 chr1 21403173 21403226 -260790438 - MLT1L LTR MaLR -58 557 504 455 149 14 0 chr1 21404053 21404127 -260789537 - Charlie3 DNA MER1_type -4 2706 2632 540 308 69 21 chr1 21404187 21404564 -260789100 - L2 LINE L2 -403 2911 2517 190 303 40 0 chr1 21404562 21404638 -260789026 + MIR SINE MIR 165 243 -19 * 1055 253 4 9 chr1 21405167 21405396 -260788268 + MIR SINE MIR 20 247 -15 2382 95 0 3 chr1 21405899 21406205 -260787459 - AluSq SINE Alu -8 305 1 2189 133 3 0 chr1 21407155 21407463 -260786201 + AluSx SINE Alu 1 309 -3 1431 254 17 3 chr1 21407525 21407887 -260785777 - LTR16A LTR ERVL -62 388 22 555 228 44 13 chr1 21407892 21408050 -260785614 + MIR SINE MIR 88 250 -12 527 284 147 0 chr1 21408109 21408334 -260785330 + MIR SINE MIR 2 259 -3 906 183 61 19 chr1 21408549 21408764 -260784900 + MIR SINE MIR 20 241 -21 378 276 22 103 chr1 21408949 21409134 -260784530 - MIR SINE MIR -10 252 83 2156 94 3 44 chr1 21409307 21409624 -260784040 - AluSq SINE Alu 0 305 1 223 337 10 20 chr1 21409633 21409731 -260783933 - MIR3 SINE MIR -98 110 14 798 248 37 9 chr1 21409732 21409950 -260783714 + MER58A DNA MER1_type 1 224 0 2162 128 26 7 chr1 21410149 21410455 -260783209 - AluSx SINE Alu 0 312 1 203 224 41 0 chr1 21410678 21410727 -260782937 + L2 LINE L2 3251 3301 -12 2391 101 3 0 chr1 21410996 21411302 -260782362 + AluSx SINE Alu 4 310 -2 759 245 130 71 chr1 21411312 21411595 -260782069 + MLT1L LTR MaLR 100 365 -250 1975 154 3 3 chr1 21411595 21411894 -260781770 - AluSx SINE Alu -12 300 2 759 245 130 71 chr1 21411894 21412019 -260781645 + MLT1L LTR MaLR 365 481 -134 1395 219 68 7 chr1 21412019 21412311 -260781353 + AluJo SINE Alu 2 311 -1 759 245 130 71 chr1 21412311 21412331 -260781333 + MLT1L LTR MaLR 481 610 -5 909 234 25 62 chr1 21412414 21412485 -260781179 - MIR SINE MIR -3 259 187 2099 109 33 0 chr1 21412485 21412812 -260780852 - AluSx SINE Alu 0 336 1 909 234 25 62 chr1 21412812 21412983 -260780681 - MIR SINE MIR -75 187 25 268 325 79 48 chr1 21413023 21413251 -260780413 - L2 LINE L2 -5 3267 3033 200 336 106 19 chr1 21413504 21413712 -260779952 + L2 LINE L2 2447 2672 -642 369 328 8 0 chr1 21413909 21414037 -260779627 + L2 LINE L2 3185 3313 0 289 320 25 16 chr1 21414060 21414182 -260779482 + L2 LINE L2 3150 3272 0 1373 114 19 19 chr1 21414242 21414452 -260779212 - MER1B DNA MER1_type 0 339 130 203 343 76 0 chr1 21414453 21414558 -260779106 + MIR SINE MIR 102 214 -48 815 156 0 0 chr1 21414577 21414699 -260778965 - MER1B DNA MER1_type -175 122 1 527 274 50 53 chr1 21415018 21415317 -260778347 + L1ME3 LINE L1 5052 5349 -797 600 75 0 21 chr1 21415323 21415417 -260778247 + AluSg/x SINE Alu 214 305 -5 1899 151 17 20 chr1 21415426 21415725 -260777939 + AluJo SINE Alu 1 298 -14 3123 202 61 19 chr1 21415728 21415885 -260777779 + L1ME3 LINE L1 5367 5516 -646 2629 65 0 0 chr1 21415885 21416193 -260777471 - AluY SINE Alu -3 308 1 3123 202 61 19 chr1 21416193 21416791 -260776873 + L1ME3 LINE L1 5516 6154 -8 189 171 0 0 chr1 21416791 21416826 -260776838 + GA-rich Low_complexity Low_complexity 4 38 0 207 122 0 49 chr1 21416840 21416881 -260776783 + (TTCC)n Simple_repeat Simple_repeat 1 39 0 258 305 0 0 chr1 21416884 21416943 -260776721 + polypurine Low_complexity Low_complexity 5 63 0 625 271 36 61 chr1 21417038 21417285 -260776379 + MIR SINE MIR 16 256 -6 234 260 0 0 chr1 21417319 21417369 -260776295 + MIR SINE MIR 198 247 -15 * 336 261 133 39 chr1 21417367 21417547 -260776117 - MIR SINE MIR 0 262 66 308 268 169 56 chr1 21417797 21418010 -260775654 - MIR SINE MIR -6 256 20 344 178 41 0 chr1 21418033 21418106 -260775558 - MIR SINE MIR -110 152 77 2329 115 0 0 chr1 21418499 21418803 -260774861 + AluSx SINE Alu 1 304 -8 634 278 139 24 chr1 21418854 21418993 -260774671 + L2 LINE L2 2659 2781 -532 1457 106 13 47 chr1 21418993 21419229 -260774435 + MER30 DNA MER1_type 2 229 -1 634 278 139 24 chr1 21419229 21419464 -260774200 + L2 LINE L2 2781 2988 -325 448 95 81 0 chr1 21419464 21419538 -260774126 - MADE1 DNA Mariner 0 80 1 634 278 139 24 chr1 21419538 21419607 -260774057 + L2 LINE L2 2988 3048 -265 187 31 62 0 chr1 21419607 21419639 -260774025 + T-rich Low_complexity Low_complexity 2 35 0 634 278 139 24 chr1 21419639 21419661 -260774003 + L2 LINE L2 3048 3179 -134 3716 84 11 4 chr1 21419816 21420350 -260773314 + L1PA10 LINE L1 5627 6164 -4 2096 136 58 3 chr1 21420865 21421210 -260772454 + THE1B LTR MaLR 1 364 0 182 125 62 0 chr1 21421514 21421546 -260772118 + L2 LINE L2 3274 3307 -6 2115 148 3 0 chr1 21421788 21422092 -260771572 - AluSx SINE Alu -7 305 1 615 269 89 14 chr1 21422818 21423279 -260770385 + L2 LINE L2 2549 3056 -257 2908 144 29 20 chr1 21423628 21424189 -260769475 + L1MB2 LINE L1 5599 6164 -7 2402 92 3 13 chr1 21424212 21424528 -260769136 + AluSq SINE Alu 1 313 0 25 31 0 0 chr1 21424524 21424556 -260769108 + AT_rich Low_complexity Low_complexity 1 32 0 368 299 109 7 chr1 21424561 21424708 -260768956 - MIR SINE MIR -16 246 85 416 315 99 6 chr1 21425132 21425313 -260768351 - MIR SINE MIR -58 204 7 2467 92 0 0 chr1 21425590 21425896 -260767768 - AluSc SINE Alu -3 306 1 364 289 116 0 chr1 21425900 21426073 -260767591 + L2 LINE L2 3116 3308 -5 2217 106 23 0 chr1 21426612 21426913 -260766751 + AluSg SINE Alu 1 308 -2 198 263 0 0 chr1 21426915 21426972 -260766692 + G-rich Low_complexity Low_complexity 6 62 0 * 612 125 0 0 chr1 21426960 21427056 -260766608 + (GAAAA)n Simple_repeat Simple_repeat 5 100 0 2460 97 0 0 chr1 21427342 21427652 -260766012 + AluSx SINE Alu 1 310 -2 393 215 0 74 chr1 21428239 21428360 -260765304 - MLT1K LTR MaLR -7 581 470 305 300 54 15 chr1 21428479 21428609 -260765055 + MIR SINE MIR 116 250 -12 1985 266 83 24 chr1 21428879 21429315 -260764349 + L2 LINE L2 121 530 -2784 1903 141 3 30 chr1 21429315 21429613 -260764051 - AluSx SINE Alu -20 292 3 1985 266 83 24 chr1 21429613 21430053 -260763611 + L2 LINE L2 530 1049 -2265 1409 201 28 18 chr1 21430136 21430419 -260763245 - AluJo SINE Alu -26 286 1 386 265 27 7 chr1 21430419 21430566 -260763098 + L2 LINE L2 1206 1355 -1959 * 577 191 254 10 chr1 21430564 21430773 -260762891 - L2 LINE L2 -1238 2076 1817 280 189 4 0 chr1 21430773 21430827 -260762837 + L1ME2 LINE L1 6107 6162 0 2253 123 0 0 chr1 21431043 21431345 -260762319 - AluSx SINE Alu -10 302 1 3252 152 22 19 chr1 21431377 21431426 -260762238 - L1MB3 LINE L1 -2 6181 6134 2267 91 13 13 chr1 21431426 21431724 -260761940 - AluSp SINE Alu -15 298 1 3252 152 22 19 chr1 21431724 21432261 -260761403 - L1MB3 LINE L1 -49 6134 5593 1067 162 0 22 chr1 21432272 21432457 -260761207 - FRAM SINE Alu 0 176 1 1058 167 5 42 chr1 21432457 21432672 -260760992 - L1MB3 LINE L1 -563 5608 5402 4932 154 24 36 chr1 21432687 21433376 -260760288 - L1MC1 LINE L1 -320 6013 5318 2232 100 0 7 chr1 21433376 21433689 -260759975 - AluSx SINE Alu 0 311 1 4932 154 24 36 chr1 21433689 21433864 -260759800 - L1MC1 LINE L1 -1015 5318 5142 2433 99 0 0 chr1 21433864 21434176 -260759488 - AluSx SINE Alu 0 312 1 4932 154 24 36 chr1 21434176 21434377 -260759287 - L1MC1 LINE L1 -1191 5142 4946 1393 203 14 3 chr1 21434377 21434668 -260758996 + L2 LINE L2 2392 2685 -629 7827 215 33 38 chr1 21434689 21435960 -260757704 + L1MB7 LINE L1 14 1291 -5353 2313 92 0 10 chr1 21435960 21436266 -260757398 + AluY SINE Alu 1 303 -8 7827 215 33 38 chr1 21436266 21436950 -260756714 + L1MB7 LINE L1 1291 1977 -4667 2294 116 3 0 chr1 21436950 21437261 -260756403 + AluSx SINE Alu 1 312 0 2278 120 3 0 chr1 21437263 21437571 -260756093 + AluSp SINE Alu 1 309 -4 7827 215 33 38 chr1 21437571 21438053 -260755611 + L1MB7 LINE L1 1978 2461 -4183 2299 88 7 13 chr1 21438053 21438358 -260755306 + AluSq SINE Alu 1 303 -10 7827 215 33 38 chr1 21438358 21438432 -260755232 + L1MB7 LINE L1 2461 2534 -4110 2172 102 0 3 chr1 21438432 21438750 -260754914 + AluSx SINE Alu 2 318 0 7827 215 33 38 chr1 21438750 21439453 -260754211 + L1MB7 LINE L1 2534 3245 -3399 1278 211 29 36 chr1 21439454 21439563 -260754101 + AluJo SINE Alu 32 140 -189 2462 84 3 0 chr1 21439563 21439862 -260753802 + AluSq SINE Alu 1 300 -13 1278 211 29 36 chr1 21439862 21440052 -260753612 + AluJo SINE Alu 140 329 0 2044 127 20 0 chr1 21440052 21440344 -260753320 + AluSp SINE Alu 2 299 -14 9563 185 27 69 chr1 21440348 21441577 -260752087 + L1MB7 LINE L1 3249 4528 -2154 710 220 0 0 chr1 21441577 21441709 -260751955 + FLAM_A SINE Alu 1 132 -1 9563 185 27 69 chr1 21441709 21441946 -260751718 + L1MB7 LINE L1 4528 4773 -1909 2089 120 29 19 chr1 21441946 21442255 -260751409 - AluSx SINE Alu 0 312 1 9563 185 27 69 chr1 21442255 21443380 -260750284 + L1MB7 LINE L1 4773 5644 -1038 1763 164 7 20 chr1 21443380 21443684 -260749980 + AluJb SINE Alu 5 304 -8 9563 185 27 69 chr1 21443684 21444664 -260749000 + L1MB7 LINE L1 5644 6663 -19 2281 226 129 62 chr1 21444672 21444935 -260748729 + L1MC4 LINE L1 6479 6723 -1085 1997 145 0 3 chr1 21444935 21445253 -260748411 + AluSx SINE Alu 1 317 0 2281 226 129 62 chr1 21445253 21445536 -260748128 + L1MC4 LINE L1 6723 6986 -822 2226 100 10 0 chr1 21445536 21445825 -260747839 + AluSq SINE Alu 1 292 -21 2281 226 129 62 chr1 21445825 21446001 -260747663 + L1MC4 LINE L1 6986 7149 -659 2123 86 57 0 chr1 21446001 21446280 -260747384 + AluSg SINE Alu 1 295 -15 2281 226 129 62 chr1 21446280 21446765 -260746899 + L1MC4 LINE L1 7149 7687 -121 887 182 14 0 chr1 21446797 21446945 -260746719 - MER63 DNA MER1_type -55 781 6 854 171 0 0 chr1 21447010 21447139 -260746525 + FLAM_C SINE Alu 1 129 -14 2103 130 0 3 chr1 21447261 21447560 -260746104 - AluSx SINE Alu -14 298 1 186 306 0 0 chr1 21447637 21447686 -260745978 + L2 LINE L2 3214 3262 -10 2053 93 50 4 chr1 21447837 21448116 -260745548 + AluSg1 SINE Alu 1 292 -17 666 143 143 25 chr1 21448136 21448255 -260745409 + FLAM_C SINE Alu 1 133 0 450 36 0 0 chr1 21448680 21448736 -260744928 + (CAAAA)n Simple_repeat Simple_repeat 5 60 0 2076 139 0 0 chr1 21449145 21449440 -260744224 + AluSx SINE Alu 1 295 -17 413 315 89 0 chr1 21450693 21450906 -260742758 - MIR SINE MIR -10 252 21 2134 70 0 0 chr1 21451118 21451388 -260742276 - MER41A LTR ERV1 -1 553 284 418 130 0 39 chr1 21451392 21451469 -260742195 + Alu SINE Alu 238 311 -1 9025 86 26 2 chr1 21451470 21452433 -260741231 - HUERS-P1 LTR ERV1 -3068 3195 2194 2305 105 3 16 chr1 21452433 21452748 -260740916 + AluSp SINE Alu 1 311 -2 9025 86 26 2 chr1 21452748 21453000 -260740664 - HUERS-P1 LTR ERV1 -4069 2194 1950 4543 158 71 23 chr1 21452984 21453594 -260740070 - HUERS-P1 LTR ERV1 -4171 1775 1196 * 186 71 0 0 chr1 21453594 21453622 -260740042 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 4543 158 71 23 chr1 21453622 21454597 -260739067 - HUERS-P1 LTR ERV1 -4750 1196 27 4029 105 2 16 chr1 21454677 21454909 -260738755 - MER41A LTR ERV1 0 554 320 2368 81 10 7 chr1 21454909 21455218 -260738446 - AluSq SINE Alu -2 311 2 4029 105 2 16 chr1 21455218 21455547 -260738117 - MER41A LTR ERV1 -234 320 1 223 242 32 0 chr1 21456056 21456118 -260737546 - MIR SINE MIR -67 141 78 2322 106 6 0 chr1 21456206 21456517 -260737147 - AluSq SINE Alu 0 313 1 408 143 0 0 chr1 21456601 21456664 -260737000 - MER53 DNA DNA 0 189 127 1784 160 0 17 chr1 21456787 21457111 -260736553 - AluJb SINE Alu 0 312 3 360 256 286 12 chr1 21457127 21457295 -260736369 + MIR SINE MIR 49 262 0 447 163 45 203 chr1 21457514 21457614 -260736050 - MER69A DNA AcHobo -2351 175 121 2325 101 3 7 chr1 21457614 21457922 -260735742 + AluSg SINE Alu 1 307 -3 447 163 45 203 chr1 21457922 21458023 -260735641 - MER69A DNA AcHobo -2405 121 6 855 253 40 100 chr1 21458034 21458552 -260735112 + MLT1J LTR MaLR 25 511 0 387 294 32 9 chr1 21458556 21458674 -260734990 + MIR SINE MIR 40 163 -45 35 41 0 0 chr1 21458674 21458723 -260734941 + AT_rich Low_complexity Low_complexity 1 49 0 480 340 32 51 chr1 21458736 21459090 -260734574 + L1ME4a LINE L1 4812 5156 -990 2110 133 0 3 chr1 21459090 21459384 -260734280 - AluSg SINE Alu -17 293 1 480 340 32 51 chr1 21459384 21459497 -260734167 + L1ME4a LINE L1 5156 5270 -876 1266 188 38 25 chr1 21459507 21459713 -260733951 + MER33 DNA MER1_type 1 203 -2382 252 0 0 0 chr1 21459713 21459741 -260733923 + (TA)n Simple_repeat Simple_repeat 2 29 0 1964 147 10 7 chr1 21459741 21460047 -260733617 - AluJb SINE Alu -5 307 1 1266 188 38 25 chr1 21460047 21460159 -260733505 + MER33 DNA MER1_type 202 324 0 530 317 33 13 chr1 21460160 21460463 -260733201 + L1ME4a LINE L1 5260 5568 -791 2172 132 0 0 chr1 21460599 21460902 -260732762 - AluSq SINE Alu -10 303 1 260 243 43 0 chr1 21460910 21460980 -260732684 + L1ME4a LINE L1 5582 5654 -2154 23 0 0 0 chr1 21461456 21461479 -260732185 + AT_rich Low_complexity Low_complexity 1 23 0 668 156 65 54 chr1 21461502 21461688 -260731976 + MER53 DNA DNA 2 189 0 517 240 47 13 chr1 21462035 21462211 -260731453 + MIR SINE MIR 6 184 -60 317 195 0 12 chr1 21462269 21462351 -260731313 + (TA)n Simple_repeat Simple_repeat 1 81 0 289 149 45 45 chr1 21462364 21462431 -260731233 + L1ME4a LINE L1 5944 6010 -111 2459 84 3 0 chr1 21462937 21463236 -260730428 + AluSp SINE Alu 1 300 -13 2261 114 0 7 chr1 21463247 21463555 -260730109 + AluSc SINE Alu 1 306 -3 447 227 103 43 chr1 21464460 21464645 -260729019 + MIR SINE MIR 67 262 0 829 211 38 19 chr1 21465276 21465489 -260728175 + MIR SINE MIR 14 230 -32 228 241 102 37 chr1 21465617 21465725 -260727939 + MIR SINE MIR 47 161 -101 250 320 48 32 chr1 21465973 21466098 -260727566 + L1MEd LINE L1 527 653 -5466 1450 119 0 0 chr1 21466180 21466374 -260727290 + AluSg SINE Alu 17 210 -100 417 103 0 0 chr1 21466374 21466432 -260727232 + AluSq/x SINE Alu 78 135 -178 2021 141 0 3 chr1 21466432 21466723 -260726941 + AluSx SINE Alu 1 290 -22 346 301 61 61 chr1 21466731 21467193 -260726471 + L1MEd LINE L1 730 1191 -4928 2466 77 3 0 chr1 21467203 21467501 -260726163 + AluSp SINE Alu 1 299 -14 2186 111 0 0 chr1 21467828 21468125 -260725539 - AluSg SINE Alu -13 297 1 388 207 86 17 chr1 21468154 21468270 -260725394 + L2 LINE L2 3148 3271 -1 332 188 40 89 chr1 21468269 21468370 -260725294 + MIR SINE MIR 97 192 -70 * 219 259 0 0 chr1 21468414 21468468 -260725196 + MIR SINE MIR 101 154 -108 583 228 44 38 chr1 21469165 21469323 -260724341 - MLT1J2 LTR MaLR 0 450 292 400 268 18 9 chr1 21469317 21469429 -260724235 - MLT1J1 LTR MaLR -281 165 53 * 192 125 0 0 chr1 21469509 21469541 -260724123 + (CAT)n Simple_repeat Simple_repeat 2 33 0 521 259 30 0 chr1 21469547 21469678 -260723986 - MIR SINE MIR -117 145 11 618 293 54 20 chr1 21469779 21470076 -260723588 + L2 LINE L2 3005 3311 -2 180 0 0 0 chr1 21470166 21470186 -260723478 + (TTCA)n Simple_repeat Simple_repeat 4 23 0 241 344 45 40 chr1 21471041 21471416 -260722248 - L1ME4a LINE L1 -20 6101 5725 1939 159 0 0 chr1 21471496 21471785 -260721879 - AluSx SINE Alu -23 289 1 2224 136 0 0 chr1 21472296 21472604 -260721060 - AluSx SINE Alu -2 310 3 480 269 31 19 chr1 21472864 21473024 -260720640 - MIR SINE MIR -92 170 9 1874 161 6 16 chr1 21473248 21473559 -260720105 + AluJo SINE Alu 1 308 -4 2359 94 3 0 chr1 21474057 21474354 -260719310 + AluSx SINE Alu 1 298 -14 2429 85 3 3 chr1 21474697 21475002 -260718662 + AluSg SINE Alu 1 305 -5 351 224 104 57 chr1 21475028 21475108 -260718556 + L1ME4a LINE L1 5902 5977 -144 568 113 0 0 chr1 21475108 21475188 -260718476 - MER116 DNA Mariner 0 80 1 351 224 104 57 chr1 21475188 21475299 -260718365 + L1ME4a LINE L1 5977 6102 -19 2315 107 0 0 chr1 21475300 21475609 -260718055 - AluSx SINE Alu -3 309 1 470 274 92 26 chr1 21475722 21475875 -260717789 + MIR3 SINE MIR 35 197 -11 670 110 0 0 chr1 21476363 21476463 -260717201 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 257 159 0 0 chr1 21476463 21476501 -260717163 - Alu SINE Alu 0 400 263 1945 115 7 3 chr1 21476465 21476753 -260716911 - AluSg1 SINE Alu -20 289 1 258 320 131 48 chr1 21476953 21477159 -260716505 - MIR SINE MIR -21 241 19 1917 152 0 9 chr1 21477325 21477640 -260716024 + AluSx SINE Alu 1 312 0 753 93 0 0 chr1 21477701 21477808 -260715856 + (CCA)n Simple_repeat Simple_repeat 1 107 0 2239 125 27 29 chr1 21477913 21478289 -260715375 + THE1C LTR MaLR 1 375 0 1795 157 0 27 chr1 21478354 21478654 -260715010 + AluJb SINE Alu 1 292 -20 2155 85 0 14 chr1 21478662 21478956 -260714708 + AluY SINE Alu 1 290 -21 21 36 0 0 chr1 21478956 21478984 -260714680 + AT_rich Low_complexity Low_complexity 1 28 0 2097 136 3 0 chr1 21479089 21479397 -260714267 + AluSx SINE Alu 1 309 -3 929 125 0 22 chr1 21479718 21479854 -260713810 + FLAM_C SINE Alu 1 133 0 28 22 0 22 chr1 21479857 21479877 -260713787 + AT_rich Low_complexity Low_complexity 1 20 -25 2129 102 0 3 chr1 21479877 21480171 -260713493 + AluSq SINE Alu 2 294 -19 28 22 0 22 chr1 21480171 21480196 -260713468 + AT_rich Low_complexity Low_complexity 20 45 0 647 203 0 0 chr1 21480343 21480461 -260713203 + FRAM SINE Alu 48 165 -11 927 52 0 0 chr1 21480642 21480757 -260712907 - L1PA8 LINE L1 0 6172 6058 436 266 7 0 chr1 21480764 21480903 -260712761 - L1MC4a LINE L1 -1983 5825 5686 1291 140 0 18 chr1 21481316 21481545 -260712119 + AluJb SINE Alu 80 304 -8 314 283 89 45 chr1 21481548 21481766 -260711898 + LTR43 LTR ERV1 221 366 -146 4289 98 29 0 chr1 21481766 21482361 -260711303 - LTR9 LTR ERV1 0 612 1 314 283 89 45 chr1 21482361 21482454 -260711210 + LTR43 LTR ERV1 366 453 -59 690 152 19 0 chr1 21482540 21482645 -260711019 - LTR9 LTR ERV1 0 612 506 1693 127 0 78 chr1 21482708 21483046 -260710618 + AluSx SINE Alu 1 314 0 335 260 22 8 chr1 21483055 21483163 -260710501 - L1MC4a LINE L1 -541 5580 5487 1701 151 3 14 chr1 21483261 21483545 -260710119 - AluJo SINE Alu -25 287 7 1153 83 0 0 chr1 21483764 21483921 -260709743 - AluSq SINE Alu -1 312 156 590 94 12 0 chr1 21483921 21484006 -260709658 - AluSq SINE Alu -226 87 2 4532 110 14 30 chr1 21484251 21484953 -260708711 + L1PA16 LINE L1 5408 6098 -68 784 110 0 63 chr1 21484953 21485080 -260708584 - AluSq/x SINE Alu -193 120 2 2383 65 3 0 chr1 21485091 21485399 -260708265 - AluY SINE Alu -2 309 1 288 288 50 0 chr1 21485400 21485480 -260708184 - MER81 DNA DNA -30 84 1 327 185 230 14 chr1 21485578 21485719 -260707945 + MIR SINE MIR 20 183 -25 287 200 40 13 chr1 21486656 21486731 -260706933 - L2 LINE L2 -255 3058 2982 834 113 0 8 chr1 21487293 21487417 -260706247 - FLAM_C SINE Alu -20 123 1 302 244 26 13 chr1 21487633 21487711 -260705953 + L2 LINE L2 3189 3267 -5 602 202 42 0 chr1 21488142 21488261 -260705403 - Charlie1 DNA MER1_type 0 2761 2638 982 137 128 39 chr1 21488267 21488471 -260705193 - Charlie1 DNA MER1_type -2534 227 6 2061 100 0 7 chr1 21489109 21489388 -260704276 - AluSg SINE Alu -31 279 3 468 264 33 55 chr1 21490120 21490302 -260703362 + MER5B DNA MER1_type 1 178 0 903 153 15 56 chr1 21490325 21490521 -260703143 - MER5A DNA MER1_type -1 188 1 1097 198 73 42 chr1 21490529 21490707 -260702957 - MER33 DNA MER1_type -2261 324 130 2155 99 6 10 chr1 21490707 21491020 -260702644 - AluSp SINE Alu -1 312 1 1097 198 73 42 chr1 21491020 21491154 -260702510 - MER33 DNA MER1_type -2455 130 2 540 298 312 5 chr1 21491245 21491678 -260701986 - L3 LINE CR1 -204 1373 808 1276 133 22 49 chr1 21491682 21491907 -260701757 + MER20 DNA MER1_type 1 219 0 184 313 94 0 chr1 21492055 21492119 -260701545 - L3 LINE CR1 -1176 401 332 596 240 213 6 chr1 21492245 21492428 -260701236 + MIR SINE MIR 36 256 -6 235 250 191 0 chr1 21492503 21492587 -260701077 - L1ME LINE L1 -200 5921 5822 233 316 87 6 chr1 21493707 21493830 -260699834 - MIR SINE MIR -76 132 34 270 219 55 14 chr1 21494280 21494353 -260699311 - L2 LINE L2 0 3313 3238 363 204 133 44 chr1 21494570 21494683 -260698981 + MIR SINE MIR 119 241 -21 197 161 0 0 chr1 21494924 21494955 -260698709 - L2 LINE L2 -9 3304 3274 391 373 90 6 chr1 21495022 21495365 -260698299 - L2 LINE L2 -582 2732 2361 312 254 215 0 chr1 21495975 21496105 -260697559 + L2 LINE L2 3115 3272 0 301 322 164 39 chr1 21496210 21496760 -260696904 + L2 LINE L2 2420 3053 -219 1039 204 92 46 chr1 21496864 21497165 -260696499 - MER77 LTR ERV1 -7 598 307 186 43 0 0 chr1 21497167 21497190 -260696474 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 361 202 12 48 chr1 21497297 21497381 -260696283 - MER77 LTR ERV1 -471 134 54 194 246 105 0 chr1 21497425 21497482 -260696182 + L2 LINE L2 3112 3174 -98 509 293 192 5 chr1 21497491 21497689 -260695975 + MIR SINE MIR 13 247 -15 239 200 18 127 chr1 21498526 21498691 -260694973 - L1ME4a LINE L1 -3 6118 5972 871 204 82 41 chr1 21498914 21499183 -260694481 - L1ME1 LINE L1 -5 6161 5882 28 0 0 0 chr1 21500005 21500033 -260693631 + AT_rich Low_complexity Low_complexity 1 28 0 223 121 0 0 chr1 21500436 21500469 -260693195 + MER91B DNA MER1_type 28 60 -130 606 173 62 78 chr1 21500658 21500837 -260692827 + MER69A DNA AcHobo 2 177 0 298 154 0 187 chr1 21500845 21500936 -260692728 - MER69A DNA AcHobo -103 74 1 22 0 0 0 chr1 21501426 21501448 -260692216 + AT_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr1 21501544 21501578 -260692086 + AT_rich Low_complexity Low_complexity 1 34 0 2246 77 7 0 chr1 21501585 21501885 -260691779 - AluSp SINE Alu -11 302 1 315 337 41 35 chr1 21501885 21502057 -260691607 - L1ME4a LINE L1 -21 6100 5928 2262 84 3 0 chr1 21502084 21502382 -260691282 + AluSp SINE Alu 1 299 -14 1600 196 0 0 chr1 21502830 21503126 -260690538 - AluJb SINE Alu -15 297 2 1426 282 92 48 chr1 21503384 21504216 -260689448 - L1MC4a LINE L1 -752 5394 4600 1713 155 48 0 chr1 21504216 21504506 -260689158 - AluJb SINE Alu -8 304 1 1426 282 92 48 chr1 21504506 21504922 -260688742 - L1MC4a LINE L1 -1546 4600 4611 2116 76 53 23 chr1 21504922 21505226 -260688438 - AluSq SINE Alu 0 313 1 1426 282 92 48 chr1 21505226 21505313 -260688351 - L1MC4a LINE L1 -1534 4612 4530 361 289 67 30 chr1 21505345 21505480 -260688184 - L1MC4a LINE L1 -1686 4460 4321 4553 188 53 11 chr1 21505520 21506230 -260687434 - L1MB5 LINE L1 0 6174 5496 2246 72 0 3 chr1 21506230 21506521 -260687143 - AluY SINE Alu -21 290 1 4553 188 53 11 chr1 21506521 21506932 -260686732 - L1MB5 LINE L1 -678 5496 4058 369 269 32 59 chr1 21506939 21507052 -260686612 - L1ME4a LINE L1 -325 5796 5688 1954 139 0 13 chr1 21507052 21507368 -260686296 - AluJb SINE Alu 0 312 1 369 269 32 59 chr1 21507368 21507440 -260686224 - L1ME4a LINE L1 -433 5688 5616 2249 95 0 0 chr1 21509477 21509772 -260683892 + AluSg SINE Alu 1 295 -15 486 235 206 0 chr1 21509979 21510115 -260683549 + MER3 DNA MER1_type 46 209 0 288 242 16 0 chr1 21510062 21510124 -260683540 - MER3 DNA MER1_type -108 101 39 * 511 227 43 87 chr1 21510893 21511100 -260682564 - L1ME LINE L1 -365 5756 5559 2294 90 0 0 chr1 21515405 21515704 -260677960 - AluSg SINE Alu -11 299 1 241 225 112 11 chr1 21517886 21517975 -260675689 + L3 LINE CR1 1450 1547 -30 233 371 147 23 chr1 21518473 21518780 -260674884 - L2 LINE L2 -8 3264 2920 1357 188 3 24 chr1 21518926 21519218 -260674446 + AluJo SINE Alu 1 286 -26 311 160 120 13 chr1 21519542 21519617 -260674047 - MIR SINE MIR -156 106 24 1564 169 11 0 chr1 21519733 21520012 -260673652 + AluJo SINE Alu 1 282 -30 190 274 155 12 chr1 21520433 21520517 -260673147 + L2 LINE L2 3218 3313 0 358 263 0 0 chr1 21520824 21520900 -260672764 + MIR SINE MIR 187 262 0 194 347 74 33 chr1 21520932 21521053 -260672611 - MIR SINE MIR -20 242 117 499 240 153 33 chr1 21521067 21521217 -260672447 - MER5A DNA MER1_type -8 181 14 2530 43 0 0 chr1 21521429 21521734 -260671930 + AluY SINE Alu 1 305 -6 184 331 88 22 chr1 21521896 21522032 -260671632 + L2 LINE L2 2284 2428 -886 2162 93 7 3 chr1 21522425 21522726 -260670938 - AluSp SINE Alu -11 302 1 2528 45 0 3 chr1 21523487 21523799 -260669865 + AluY SINE Alu 1 311 0 216 196 130 33 chr1 21524038 21524130 -260669534 + L2 LINE L2 3171 3271 -1 316 273 45 65 chr1 21525520 21525674 -260667990 - MIR3 SINE MIR -57 151 1 182 172 103 52 chr1 21525674 21525724 -260667940 - L3 LINE CR1 -99 1478 1426 243 0 0 0 chr1 21526943 21526970 -260666694 + (GGGAGA)n Simple_repeat Simple_repeat 3 29 0 217 342 34 33 chr1 21528323 21528446 -260665218 + MIR SINE MIR 27 148 -62 337 289 125 8 chr1 21528503 21528631 -260665033 - MIR SINE MIR -6 256 114 403 218 97 26 chr1 21528684 21528911 -260664753 - ORSL DNA AcHobo -2 273 2 2154 115 0 0 chr1 21529148 21529453 -260664211 + AluSq SINE Alu 1 305 -8 368 273 50 29 chr1 21530125 21530335 -260663329 + MIR3 SINE MIR 37 254 -8 627 207 0 0 chr1 21530593 21530743 -260662921 + (CAT)n Simple_repeat Simple_repeat 1 150 0 922 143 41 0 chr1 21530745 21530892 -260662772 + MSTA LTR MaLR 3 155 -273 4140 73 6 20 chr1 21531069 21531606 -260662058 - LTR14 LTR ERVK -19 529 1 11542 189 20 11 chr1 21531608 21534711 -260658953 - HERVKC4 LTR ERVK -6 7392 3517 3224 292 12 3 chr1 21534699 21535607 -260658057 - HERVK14C LTR ERVK -5640 1777 862 * 5290 123 7 3 chr1 21535588 21536342 -260657322 - HERVK14C LTR ERVK -4505 757 1 4069 83 14 20 chr1 21536342 21536893 -260656771 - LTR14 LTR ERVK 0 548 1 763 110 189 0 chr1 21536896 21537023 -260656641 + MSTA LTR MaLR 276 426 -2 887 173 0 7 chr1 21537032 21537337 -260656327 + (CAT)n Simple_repeat Simple_repeat 1 302 0 298 154 39 51 chr1 21537338 21537416 -260656248 + (CACCAT)n Simple_repeat Simple_repeat 2 78 0 386 168 0 32 chr1 21537581 21537676 -260655988 + (CACCAT)n Simple_repeat Simple_repeat 6 97 0 362 297 82 47 chr1 21537889 21538039 -260655625 - L2 LINE L2 -58 3255 3112 2354 95 0 0 chr1 21538039 21538345 -260655319 + AluSg SINE Alu 1 306 -4 362 297 82 47 chr1 21538345 21538598 -260655066 - L2 LINE L2 -201 3112 2838 766 237 98 108 chr1 21539251 21539312 -260654352 - MLT1H LTR MaLR -5 544 484 2127 106 0 20 chr1 21539312 21539614 -260654050 - AluSx SINE Alu -16 296 1 766 237 98 108 chr1 21539614 21540101 -260653563 - MLT1H LTR MaLR -65 484 1 1216 180 14 18 chr1 21540158 21540375 -260653289 - MER58A DNA MER1_type -8 216 1 389 213 148 19 chr1 21540507 21540615 -260653049 - L2 LINE L2 0 3313 3192 346 271 115 89 chr1 21540616 21541033 -260652631 - MLT1K LTR MaLR -20 568 141 630 272 12 23 chr1 21541331 21541504 -260652160 - MIR3 SINE MIR -19 189 19 464 211 22 11 chr1 21541701 21541791 -260651873 + MIR SINE MIR 25 115 -147 1980 89 0 28 chr1 21542016 21542321 -260651343 + AluSq SINE Alu 11 307 0 1188 237 52 75 chr1 21542449 21542720 -260650944 - MLT1J1 LTR MaLR -2 444 226 3503 79 8 4 chr1 21542720 21543191 -260650473 - L1PA13 LINE L1 -1 6162 5690 1188 237 52 75 chr1 21543191 21543371 -260650293 - MLT1J1 LTR MaLR -220 226 43 314 296 158 46 chr1 21543409 21543605 -260650059 + L2 LINE L2 3095 3312 -1 22 80 0 0 chr1 21543610 21543660 -260650004 + AT_rich Low_complexity Low_complexity 1 50 0 274 264 81 54 chr1 21543660 21543879 -260649785 - MLT1K LTR MaLR -12 603 369 2023 74 53 33 chr1 21544443 21544742 -260648922 - AluY SINE Alu -4 307 3 273 277 84 32 chr1 21545262 21545417 -260648247 - L2 LINE L2 -180 3092 2930 232 284 0 15 chr1 21545801 21545868 -260647796 + LTR67 LTR ERVL 490 555 -2 306 271 82 0 chr1 21546160 21546245 -260647419 + L2 LINE L2 3219 3310 -3 308 296 98 82 chr1 21546324 21546895 -260646769 + ERVL LTR ERVL 993 1572 -4192 991 305 122 49 chr1 21547124 21547360 -260646304 - HAL1 LINE L1 -665 1842 1625 843 204 204 0 chr1 21547360 21547546 -260646118 + MER58A DNA MER1_type 1 224 0 991 305 122 49 chr1 21547546 21547928 -260645736 - HAL1 LINE L1 -882 1625 1272 2186 86 0 13 chr1 21547928 21548230 -260645434 - AluY SINE Alu -13 298 1 991 305 122 49 chr1 21548230 21548322 -260645342 - HAL1 LINE L1 -1235 1272 1188 1925 120 4 0 chr1 21548322 21548598 -260645066 - AluSq SINE Alu -3 310 34 991 305 122 49 chr1 21548598 21548909 -260644755 - HAL1 LINE L1 -1319 1188 744 414 0 0 0 chr1 21549087 21549133 -260644531 + (TG)n Simple_repeat Simple_repeat 1 46 0 2966 84 65 7 chr1 21549202 21549578 -260644086 + MLT2A1 LTR ERVL 3 407 -37 555 43 0 0 chr1 21549578 21549648 -260644016 + (TA)n Simple_repeat Simple_repeat 2 71 0 2966 84 65 7 chr1 21549648 21549687 -260643977 + MLT2A1 LTR ERVL 407 442 -2 819 262 126 64 chr1 21549700 21550184 -260643480 + MLT1K LTR MaLR 71 584 -4 250 289 173 19 chr1 21551146 21551302 -260642362 - L2 LINE L2 -2 3311 3132 1629 124 11 28 chr1 21551938 21551976 -260641688 - L1P4 LINE L1 -630 5531 5494 2045 125 0 3 chr1 21551976 21552272 -260641392 - AluSx SINE Alu -16 296 2 2041 108 10 0 chr1 21552273 21552561 -260641103 - AluSx SINE Alu -11 301 11 1629 124 11 28 chr1 21552561 21552747 -260640917 - L1P4 LINE L1 -667 5494 5313 2299 75 0 0 chr1 21552747 21553042 -260640622 - AluY SINE Alu -15 296 2 1629 124 11 28 chr1 21553042 21553218 -260640446 - L1P4 LINE L1 -848 5313 5135 1642 134 4 11 chr1 21553219 21553481 -260640183 + L1PA13 LINE L1 5901 6160 -3 1886 130 0 56 chr1 21554005 21554327 -260639337 + AluSx SINE Alu 1 304 -8 270 179 0 0 chr1 21554348 21554404 -260639260 + A-rich Low_complexity Low_complexity 1 56 0 2017 108 0 17 chr1 21554937 21555234 -260638430 - AluSq SINE Alu -21 292 1 2012 105 0 18 chr1 21555246 21555532 -260638132 - AluSg SINE Alu -15 295 15 239 289 256 11 chr1 21555632 21555722 -260637942 + MER5A DNA MER1_type 78 189 0 992 166 63 5 chr1 21555848 21556053 -260637611 + MER20 DNA MER1_type 1 217 -2 1606 174 43 13 chr1 21556227 21556526 -260637138 + AluJo SINE Alu 1 308 -4 342 115 0 0 chr1 21556526 21556578 -260637086 + (GGAA)n Simple_repeat Simple_repeat 1 52 0 952 180 33 6 chr1 21556863 21557046 -260636618 + MER5A DNA MER1_type 2 189 0 601 157 26 9 chr1 21557291 21557406 -260636258 - HsTC2 DNA Tc2 -1774 124 8 948 251 64 4 chr1 21557637 21557888 -260635776 - MLT1J LTR MaLR -1 510 245 267 242 144 13 chr1 21557895 21558048 -260635616 - L2 LINE L2 -1155 2159 1987 1301 280 83 26 chr1 21558329 21558700 -260634964 + LTR33 LTR ERVL 1 408 -113 2201 188 39 31 chr1 21558700 21559157 -260634507 - LOR1b LTR ERV1 0 461 1 1301 280 83 26 chr1 21559157 21559278 -260634386 + LTR33 LTR ERVL 408 521 0 3028 253 98 17 chr1 21559280 21560307 -260633357 + L2 LINE L2 1840 2950 -364 1192 203 63 12 chr1 21560307 21560668 -260632996 + MER66A LTR ERV1 28 438 -40 847 258 28 16 chr1 21560668 21560920 -260632744 + L2 LINE L2 2938 3192 -121 1254 91 205 51 chr1 21560990 21561244 -260632420 - AluSg SINE Alu -17 293 1 220 219 0 0 chr1 21561281 21561322 -260632342 + L2 LINE L2 3268 3308 -5 743 222 7 7 chr1 21562705 21562858 -260630806 - MLT1D LTR MaLR -4 501 349 * 897 166 86 11 chr1 21562846 21563021 -260630643 - MLT1D LTR MaLR -317 188 1 425 194 0 0 chr1 21563321 21563393 -260630271 - LOR1b LTR ERV1 -36 425 354 1491 152 117 72 chr1 21563581 21564010 -260629654 - LTR7 LTR ERV1 -2 448 1 255 344 45 8 chr1 21564628 21564757 -260628907 - MIR SINE MIR -78 130 36 3738 100 20 60 chr1 21564856 21564924 -260628740 + LTR9B LTR ERV1 2 71 -573 1211 67 0 6 chr1 21564924 21564936 -260628728 - L1PA4 LINE L1 -1 6154 6143 204 67 0 0 chr1 21564936 21564966 -260628698 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 1211 67 0 6 chr1 21564966 21565118 -260628546 - L1PA4 LINE L1 -12 6143 5991 3738 100 20 60 chr1 21565118 21565637 -260628027 + LTR9B LTR ERV1 71 566 -78 2185 110 3 0 chr1 21565640 21565982 -260627682 + AluY SINE Alu 1 343 0 386 191 45 22 chr1 21565982 21566071 -260627593 + LTR9B LTR ERV1 554 644 0 249 282 0 14 chr1 21566184 21566255 -260627409 - MLT1K LTR MaLR 0 588 519 245 19 19 75 chr1 21566285 21566338 -260627326 + (CCCCCA)n Simple_repeat Simple_repeat 3 52 0 355 322 44 31 chr1 21566758 21567118 -260626546 - L2 LINE L2 -1220 2094 1730 242 188 0 0 chr1 21567384 21567432 -260626232 + L2 LINE L2 3139 3186 -86 218 219 0 0 chr1 21567432 21567473 -260626191 + L2 LINE L2 3144 3184 -88 307 281 0 52 chr1 21568174 21568270 -260625394 - L2 LINE L2 0 3313 3223 386 303 162 39 chr1 21568286 21568570 -260625094 + L2 LINE L2 2860 3178 -135 1267 254 50 26 chr1 21568675 21569096 -260624568 - LTR16B LTR ERVL 0 464 34 1828 223 2 8 chr1 21569245 21569644 -260624020 + L1ME2 LINE L1 5510 5906 -258 324 180 49 0 chr1 21569655 21569716 -260623948 + AluSp/q SINE Alu 232 295 -8 685 232 116 17 chr1 21569718 21569799 -260623865 + L1ME2 LINE L1 5900 5972 -192 2165 176 10 3 chr1 21569799 21570186 -260623478 + MLT1B LTR MaLR 1 390 0 685 232 116 17 chr1 21570186 21570345 -260623319 + L1ME2 LINE L1 5972 6164 0 307 248 35 28 chr1 21570389 21570530 -260623134 + L1MC5 LINE L1 7793 7934 -27 2364 80 0 3 chr1 21570569 21570880 -260622784 - AluSg SINE Alu 0 310 1 386 345 74 10 chr1 21570984 21571187 -260622477 + MIR SINE MIR 3 218 -44 2036 135 0 3 chr1 21571193 21571505 -260622159 - AluSq SINE Alu -2 311 1 326 303 49 8 chr1 21571506 21571628 -260622036 - MLT1K LTR MaLR -11 577 451 214 237 0 0 chr1 21571635 21571673 -260621991 + polypyrimidine Low_complexity Low_complexity 2 39 0 747 318 42 45 chr1 21571862 21572309 -260621355 + L2 LINE L2 2868 3313 0 296 327 58 0 chr1 21572308 21572412 -260621252 + MIR SINE MIR 134 243 -19 * 535 321 43 0 chr1 21572926 21573088 -260620576 + MER115 DNA AcHobo 91 259 -434 180 0 0 0 chr1 21573236 21573256 -260620408 + (TTCCC)n Simple_repeat Simple_repeat 3 22 0 2094 100 20 3 chr1 21573470 21573769 -260619895 - AluSg SINE Alu -4 306 3 247 232 18 0 chr1 21574302 21574358 -260619306 - L1MC/D LINE L1 -2158 5650 5594 1858 149 0 7 chr1 21575546 21575847 -260617817 + 7SLRNA srpRNA srpRNA 2 300 -20 2204 101 3 0 chr1 21575850 21576156 -260617508 - AluSp SINE Alu 0 313 7 609 275 93 56 chr1 21576218 21576647 -260617017 + HAL1 LINE L1 1224 1668 -839 1706 147 10 40 chr1 21576993 21577292 -260616372 + AluJo SINE Alu 3 292 -20 849 204 250 4 chr1 21577331 21577591 -260616073 + MER5C DNA MER1_type 1 324 0 883 254 67 11 chr1 21577626 21577894 -260615770 - MER58 DNA MER1_type -58 283 1 1529 274 85 54 chr1 21577986 21578728 -260614936 - L1MC4a LINE L1 -1656 6152 5388 828 168 0 14 chr1 21579069 21579212 -260614452 + FLAM_C SINE Alu 1 141 -2 644 268 6 24 chr1 21579212 21579376 -260614288 - MER45A DNA AcHobo -17 161 1 280 257 49 9 chr1 21579632 21579780 -260613884 - MIR SINE MIR -54 208 20 664 183 0 58 chr1 21579786 21579923 -260613741 - FLAM_A SINE Alu 0 133 5 595 261 205 40 chr1 21580650 21581148 -260612516 + MLT1L LTR MaLR 21 600 -15 488 300 158 28 chr1 21581655 21582545 -260611119 + L2 LINE L2 2222 3233 -39 252 0 0 0 chr1 21583550 21583578 -260610086 + (CA)n Simple_repeat Simple_repeat 1 28 0 238 304 11 39 chr1 21583904 21584085 -260609579 + (CA)n Simple_repeat Simple_repeat 1 176 0 331 284 24 22 chr1 21585317 21585494 -260608170 + MLT1I LTR MaLR 268 398 -11 2154 165 62 33 chr1 21585552 21586006 -260607658 + MLT1C LTR MaLR 1 467 0 248 304 27 91 chr1 21586378 21586515 -260607149 - L2 LINE L2 -73 3240 3121 3602 110 52 40 chr1 21586515 21587088 -260606576 + LTR19B LTR ERV1 1 580 0 248 304 27 91 chr1 21587088 21587170 -260606494 - L2 LINE L2 -192 3121 3035 2407 83 0 0 chr1 21587292 21587593 -260606071 - AluSc SINE Alu -8 301 1 2580 183 97 26 chr1 21587677 21588284 -260605380 - L1MC4a LINE L1 -3 7805 7156 4182 123 111 63 chr1 21588285 21589601 -260604063 - pTR5 LTR ERV1 -5 2433 735 695 224 177 51 chr1 21589601 21589873 -260603791 - L1MD3 LINE L1 -658 7150 6820 1522 135 0 25 chr1 21589873 21590117 -260603547 - AluSx SINE Alu -11 301 64 695 224 177 51 chr1 21590117 21590160 -260603504 - L1MD3 LINE L1 -988 6820 6784 2290 94 0 0 chr1 21590171 21590458 -260603206 - AluY SINE Alu -24 287 1 2309 82 37 0 chr1 21590538 21590832 -260602832 - AluY SINE Alu -6 305 1 1775 196 57 44 chr1 21590833 21591338 -260602326 - L1MC4a LINE L1 -1280 6528 6017 453 149 0 0 chr1 21591338 21591405 -260602259 - MLT1E LTR MaLR 0 593 527 2434 83 3 0 chr1 21591407 21591707 -260601957 + AluSp SINE Alu 1 301 -12 673 214 152 18 chr1 21591813 21592037 -260601627 - MLT1E LTR MaLR -300 293 40 820 231 40 0 chr1 21592061 21592260 -260601404 - L1MC4a LINE L1 -1787 6021 5815 1398 274 14 0 chr1 21592340 21592687 -260600977 - L1MC4a LINE L1 -1993 5815 5464 445 316 57 53 chr1 21592721 21592864 -260600800 - L2 LINE L2 -5 3267 3121 222 118 0 0 chr1 21592864 21592898 -260600766 + (CA)n Simple_repeat Simple_repeat 1 34 0 445 316 57 53 chr1 21592898 21593036 -260600628 - L2 LINE L2 -151 3121 2985 4338 155 31 25 chr1 21593153 21593987 -260599677 - L1MC1 LINE L1 -1 6647 5809 1734 108 0 0 chr1 21593987 21594218 -260599446 + LOR1a LTR ERV1 1 231 -266 7231 103 22 13 chr1 21594218 21595266 -260598398 + MER11C LTR ERVK 1 1057 -14 1694 178 0 0 chr1 21595307 21595577 -260598087 + LOR1a LTR ERV1 228 497 0 20334 132 23 37 chr1 21595577 21595653 -260598011 - L1MC1 LINE L1 -2117 4344 4268 2157 130 0 0 chr1 21595653 21595952 -260597712 - AluSx SINE Alu -13 299 1 20334 132 23 37 chr1 21595952 21596067 -260597597 - L1MC1 LINE L1 -2193 4268 4153 1379 103 5 15 chr1 21596067 21596270 -260597394 - L1PA8 LINE L1 -1 6171 5971 20334 132 23 37 chr1 21596270 21597925 -260595739 - L1MC1 LINE L1 -2308 4153 2476 214 29 57 0 chr1 21597925 21597960 -260595704 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 20334 132 23 37 chr1 21597960 21600504 -260593160 - L1MC1 LINE L1 -3985 2476 74 8519 157 24 24 chr1 21600511 21601987 -260591677 + L1PA6 LINE L1 11 1486 -4660 3805 107 0 4 chr1 21601987 21602500 -260591164 + MER9 LTR ERVK 1 511 0 4701 68 7 5 chr1 21602500 21603091 -260590573 + HERVK9 LTR ERVK 1 592 -5324 34541 72 7 2 chr1 21603091 21607443 -260586221 + HERVK9 LTR ERVK 1268 5641 -275 2032 65 76 0 chr1 21607529 21607791 -260585873 + HERVK9 LTR ERVK 5635 5916 0 3661 118 0 4 chr1 21607795 21608304 -260585360 + MER9 LTR ERVK 5 511 0 25579 72 3 0 chr1 21608304 21611656 -260582008 + L1PA6 LINE L1 1482 4843 -1303 5575 50 1 1 chr1 21611668 21612347 -260581317 + L1PA6 LINE L1 5476 6154 0 665 107 0 0 chr1 21612352 21612436 -260581228 - L1P3 LINE L1 -6372 89 6 282 184 0 0 chr1 21612442 21612523 -260581141 - L1M LINE L1 -844 5302 5228 2524 153 18 5 chr1 21612874 21613273 -260580391 - MER66B LTR ERV1 0 486 83 444 129 57 0 chr1 21613449 21613519 -260580145 - MER66B LTR ERV1 -412 74 1 548 308 49 31 chr1 21613519 21613805 -260579859 - LTR16B LTR ERVL -152 312 22 1356 247 12 6 chr1 21613931 21614267 -260579397 + L1ME2 LINE L1 5505 5842 -322 291 287 119 20 chr1 21614268 21614369 -260579295 - L1ME2 LINE L1 -69 6095 5985 525 178 0 22 chr1 21614422 21614512 -260579152 - MSTC LTR MaLR -340 88 1 695 186 21 7 chr1 21614513 21614653 -260579011 - MSTC-int LTR MaLR -1 1734 1593 3406 163 25 38 chr1 21614727 21615388 -260578276 + MER54A LTR ERVL 42 901 0 1987 114 37 0 chr1 21615413 21615740 -260577924 + AluSg SINE Alu 1 337 0 1254 128 0 0 chr1 21615784 21615956 -260577708 + AluSc SINE Alu 1 172 -137 10457 167 50 32 chr1 21616074 21616272 -260577392 - L1 LINE L1 -1070 6495 6302 1489 171 17 119 chr1 21616272 21616675 -260576989 - MLT1A1 LTR MaLR 0 365 4 6913 233 33 38 chr1 21616679 21618422 -260575242 - MLT1A1-int LTR MaLR -1 1734 1 1667 183 5 92 chr1 21618422 21618822 -260574842 - MLT1A1 LTR MaLR 0 365 1 10457 167 50 32 chr1 21618822 21620898 -260572766 - L1 LINE L1 -1264 6301 4174 351 247 34 0 chr1 21620894 21620983 -260572681 - L1 LINE L1 -3630 3935 3844 * 402 109 0 0 chr1 21620987 21621042 -260572622 - Tigger2 DNA MER2_type -81 2637 2583 964 157 6 0 chr1 21621044 21621203 -260572461 + Tigger2 DNA MER2_type 2510 2669 -49 2640 229 60 26 chr1 21621310 21621562 -260572102 - L1 LINE L1 -4425 3140 2898 2002 136 14 0 chr1 21621562 21621848 -260571816 - AluSx SINE Alu -22 290 1 2640 229 60 26 chr1 21621848 21622425 -260571239 - L1 LINE L1 -4667 2898 2283 5924 154 37 16 chr1 21622429 21623704 -260569960 - L1MA5 LINE L1 -5 6295 5048 204 97 0 0 chr1 21623704 21623735 -260569929 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1811 171 0 4 chr1 21623741 21624016 -260569648 - AluJb SINE Alu -38 274 1 5924 154 37 16 chr1 21624016 21624254 -260569410 - L1MA5 LINE L1 -1256 5044 4762 696 231 0 0 chr1 21624267 21624397 -260569267 - FLAM_C SINE Alu -12 131 2 4711 183 29 23 chr1 21624398 21624950 -260568714 - L1MA5 LINE L1 -1372 4774 4212 2052 96 3 11 chr1 21624950 21625232 -260568432 + AluSc SINE Alu 22 301 -8 4711 183 29 23 chr1 21625232 21625715 -260567949 - L1MA5 LINE L1 -1934 4212 3733 2600 57 0 0 chr1 21626315 21626616 -260567048 + AluY SINE Alu 2 302 -9 2581 122 3 0 chr1 21626655 21627024 -260566640 - L1PB1 LINE L1 0 6867 6498 228 145 48 0 chr1 21627024 21627086 -260566578 + (TA)n Simple_repeat Simple_repeat 2 66 0 799 128 38 0 chr1 21627091 21627224 -260566440 - L1PB1 LINE L1 -350 6517 6380 10068 190 17 18 chr1 21627337 21627760 -260565904 - L1PB1 LINE L1 -727 6140 5718 1819 152 35 3 chr1 21627760 21628050 -260565614 - AluSx SINE Alu -13 299 1 10068 190 17 18 chr1 21628050 21628661 -260565003 - L1PB1 LINE L1 -1149 5718 5108 180 0 0 0 chr1 21628661 21628681 -260564983 + (TG)n Simple_repeat Simple_repeat 1 20 0 10068 190 17 18 chr1 21628681 21629601 -260564063 - L1PB1 LINE L1 -1759 5108 4188 6249 96 12 5 chr1 21629601 21629660 -260564004 - L1PB1 LINE L1 -1 6150 6093 2512 79 0 0 chr1 21629660 21629963 -260563701 - AluY SINE Alu -8 303 1 6249 96 12 5 chr1 21629963 21631241 -260562423 - L1PB1 LINE L1 -58 6093 4823 10068 190 17 18 chr1 21631241 21632385 -260561279 - L1PB1 LINE L1 -2679 4188 3061 1359 175 18 4 chr1 21632396 21632734 -260560930 - LTR46 LTR ERV1 -67 393 5 2376 123 6 6 chr1 21632734 21633084 -260560580 - LTR46-int LTR ERV1 0 6985 6636 2849 148 124 8 chr1 21633084 21633606 -260560058 - LTR1 LTR ERV1 0 785 203 1205 123 106 13 chr1 21633702 21633938 -260559726 - LTR1 LTR ERV1 -527 258 1 2872 142 40 36 chr1 21633941 21634295 -260559369 - LTR46-int LTR ERV1 -300 6685 6327 4993 166 17 35 chr1 21634295 21635282 -260558382 - LTR5 LTR ERVK 0 969 1 2872 142 40 36 chr1 21635282 21635454 -260558210 - LTR46-int LTR ERV1 -658 6327 6157 * 24559 104 12 20 chr1 21635442 21639038 -260554626 - LTR46-int LTR ERV1 -1052 5933 2366 1237 140 58 2 chr1 21639035 21639369 -260554295 - LTR46-int LTR ERV1 -6532 453 1 * 1641 163 21 25 chr1 21639370 21639779 -260553885 - LTR46 LTR ERV1 0 460 1 17397 116 36 9 chr1 21639779 21640917 -260552747 - L1PB1 LINE L1 -3797 3065 1960 2206 110 7 10 chr1 21640917 21641227 -260552437 - AluSp SINE Alu -4 309 1 17397 116 36 9 chr1 21641227 21642791 -260550873 - L1PB1 LINE L1 -4902 1960 288 1600 164 46 0 chr1 21642791 21643054 -260550610 + AluJo SINE Alu 23 297 -15 2090 195 43 12 chr1 21643059 21643475 -260550189 - L1M2a LINE L1 -5378 1729 1301 180 0 0 0 chr1 21643931 21643951 -260549713 + (GA)n Simple_repeat Simple_repeat 1 20 0 241 114 0 23 chr1 21644361 21644405 -260549259 - L1M2a LINE L1 -6844 186 144 733 196 43 0 chr1 21644465 21644603 -260549061 - L1M2a LINE L1 -6885 145 2 633 197 143 68 chr1 21644604 21644838 -260548826 - L1MC3 LINE L1 -903 6882 6599 294 50 0 0 chr1 21644838 21644878 -260548786 + (CA)n Simple_repeat Simple_repeat 2 41 0 633 197 143 68 chr1 21644878 21644928 -260548736 - L1MC3 LINE L1 -1186 6599 6554 669 91 10 20 chr1 21644945 21645044 -260548620 + MER4A LTR ERV1 1 98 -566 1975 142 168 20 chr1 21645044 21645396 -260548268 + MER4A LTR ERV1 261 664 0 874 106 183 0 chr1 21645399 21645541 -260548123 + MER4A-int LTR ERV1 1 168 -6430 1058 103 26 6 chr1 21645541 21645697 -260547967 - LTR7 LTR ERV1 0 450 292 5188 139 5 7 chr1 21645707 21646674 -260546990 - HERVH LTR ERV1 -2297 4232 3806 * 17151 137 4 33 chr1 21646668 21650043 -260543621 - HERVH LTR ERV1 -4126 3587 1 538 114 0 25 chr1 21650066 21650145 -260543519 + LTR7 LTR ERV1 374 450 0 1828 133 8 102 chr1 21650145 21650668 -260542996 + LTR7-int LTR ERV1 164 836 -5762 1272 231 49 18 chr1 21650724 21651053 -260542611 + LTR7-int LTR ERV1 1861 3043 -4170 6117 91 65 31 chr1 21651073 21651979 -260541685 + MER4A-int LTR ERV1 194 1068 -5530 312 27 0 0 chr1 21651979 21652016 -260541648 + (TG)n Simple_repeat Simple_repeat 2 38 0 6117 91 65 31 chr1 21652016 21652766 -260540898 + MER4A-int LTR ERV1 1068 2495 -4103 1352 162 70 4 chr1 21652766 21653007 -260540657 - LTR8 LTR ERV1 -434 257 1 4482 121 75 26 chr1 21653007 21653703 -260539961 + MER4A-int LTR ERV1 2737 3488 -3110 2474 101 36 20 chr1 21653703 21654061 -260539603 + THE1B LTR MaLR 1 364 0 4482 121 75 26 chr1 21654061 21654263 -260539401 + MER4A-int LTR ERV1 3488 3679 -2919 15938 88 71 51 chr1 21654267 21656372 -260537292 + MER4A-int LTR ERV1 3840 6087 -511 627 13 0 0 chr1 21656372 21656448 -260537216 + AluY SINE Alu 227 302 -8 15938 88 71 51 chr1 21656448 21656969 -260536695 + MER4A-int LTR ERV1 6087 6596 -2 642 101 10 20 chr1 21656976 21657075 -260536589 + MER4A LTR ERV1 1 98 -566 1683 137 161 75 chr1 21657075 21657447 -260536217 + MER4A LTR ERV1 261 664 0 1299 230 51 70 chr1 21657447 21657978 -260535686 - L1MC4a LINE L1 -1268 6540 6020 723 195 27 0 chr1 21658006 21658155 -260535509 - L1MC2 LINE L1 -139 6205 6053 307 147 0 189 chr1 21658173 21658268 -260535396 - MLT1E LTR MaLR -1 592 516 773 278 94 8 chr1 21658354 21658588 -260535076 - MLT1E LTR MaLR -300 293 40 567 289 15 5 chr1 21658619 21658816 -260534848 - L1MC2 LINE L1 -1798 6010 5812 1393 255 37 0 chr1 21658889 21659238 -260534426 - L1MC2 LINE L1 -1983 5825 5464 405 327 79 35 chr1 21659308 21659475 -260534189 - L2 LINE L2 -5 3308 3150 2018 287 26 10 chr1 21659475 21660092 -260533572 + MLT2E LTR ERVL 1 627 -1 405 327 79 35 chr1 21660092 21660242 -260533422 - L2 LINE L2 -163 3150 2977 564 222 30 0 chr1 21660350 21660485 -260533179 - L1MC1 LINE L1 -1 6332 6194 678 184 0 0 chr1 21660486 21660595 -260533069 - L1PA13 LINE L1 -6678 109 1 4071 241 8 2 chr1 21660630 21661650 -260532014 - L1MC2 LINE L1 -2158 3988 2963 579 162 9 0 chr1 21661663 21661774 -260531890 - L1MC2 LINE L1 -3789 2357 2246 2268 88 0 0 chr1 21661775 21662047 -260531617 - AluSx SINE Alu -36 276 5 3376 206 12 4 chr1 21662049 21662813 -260530851 - L1MEc LINE L1 -3166 2980 2242 1451 141 0 0 chr1 21663144 21663343 -260530321 + AluSx SINE Alu 1 199 -113 303 80 40 0 chr1 21663343 21663393 -260530271 + AluSx SINE Alu 249 300 0 1618 182 37 3 chr1 21663403 21663699 -260529965 + AluJo SINE Alu 1 306 -6 271 315 9 18 chr1 21664139 21664250 -260529414 + LTR67 LTR ERVL 354 463 -94 2437 103 3 0 chr1 21664494 21664805 -260528859 - AluSx SINE Alu 0 312 1 2139 100 62 0 chr1 21664978 21665269 -260528395 - AluSp SINE Alu -4 309 1 2065 147 3 7 chr1 21665557 21665863 -260527801 + AluJb SINE Alu 3 307 -5 1371 156 8 9 chr1 21666120 21666498 -260527166 + MSTA LTR MaLR 1 428 0 756 152 0 0 chr1 21666765 21666877 -260526787 + AluJb SINE Alu 2 113 -199 180 0 0 0 chr1 21666886 21666906 -260526758 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 916 178 19 0 chr1 21667302 21667459 -260526205 + FRAM SINE Alu 1 160 -6 2248 132 0 3 chr1 21668544 21668854 -260524810 + AluSx SINE Alu 1 309 -3 913 163 0 0 chr1 21668864 21669005 -260524659 + FLAM_C SINE Alu 1 141 -2 388 289 145 13 chr1 21669067 21669226 -260524438 + MER5A DNA MER1_type 10 189 0 3783 148 53 34 chr1 21669357 21670112 -260523552 - L1MC2 LINE L1 0 6344 5576 759 176 0 8 chr1 21670114 21670239 -260523425 + FAM SINE Alu 1 124 -61 1899 162 53 0 chr1 21670249 21670675 -260522989 - L1MC2 LINE L1 -743 5403 5133 748 253 0 6 chr1 21670677 21670835 -260522829 - MER63 DNA MER1_type -279 783 1 1532 211 4 0 chr1 21670977 21671257 -260522407 + AluJo SINE Alu 1 281 -31 1629 173 14 27 chr1 21671257 21671551 -260522113 - AluJb SINE Alu -20 292 2 404 265 28 115 chr1 21671574 21671658 -260522006 + L1ME LINE L1 4672 4762 -1384 2151 125 3 3 chr1 21671658 21671955 -260521709 + AluSx SINE Alu 1 297 -15 404 265 28 115 chr1 21671955 21672089 -260521575 + L1ME LINE L1 4762 4906 -1240 2258 108 3 0 chr1 21672089 21672394 -260521270 + AluSq SINE Alu 1 306 -7 404 265 28 115 chr1 21672394 21672600 -260521064 + L1ME LINE L1 4906 5060 -1086 2372 84 7 0 chr1 21672704 21673003 -260520661 - AluSp SINE Alu -12 301 1 423 293 125 32 chr1 21673226 21673511 -260520153 + L1ME LINE L1 5319 5630 -532 * 849 216 22 120 chr1 21673494 21673645 -260520019 + L1MC4 LINE L1 7446 7610 -432 1680 134 58 11 chr1 21673645 21673906 -260519758 + AluJb SINE Alu 3 275 -37 495 0 0 0 chr1 21673916 21673971 -260519693 + (GAAA)n Simple_repeat Simple_repeat 2 56 0 849 216 22 120 chr1 21673971 21674165 -260519499 + L1MC4 LINE L1 7619 7767 -275 203 167 0 21 chr1 21675226 21675274 -260518390 + CT-rich Low_complexity Low_complexity 4 50 0 428 360 18 13 chr1 21675278 21675503 -260518161 + MIR SINE MIR 1 226 -36 248 221 173 48 chr1 21675534 21675638 -260518026 - L2 LINE L2 -7 3265 3149 306 276 31 31 chr1 21675670 21675768 -260517896 - L2 LINE L2 -36 3236 3139 1232 198 23 123 chr1 21675918 21676078 -260517586 + L2 LINE L2 2912 3086 -227 2025 135 10 3 chr1 21676078 21676375 -260517289 + AluSx SINE Alu 1 299 -13 1232 198 23 123 chr1 21676375 21676654 -260517010 + L2 LINE L2 3086 3307 -6 234 128 0 0 chr1 21676732 21676771 -260516893 + (GA)n Simple_repeat Simple_repeat 2 40 0 508 271 169 58 chr1 21677806 21677853 -260515811 - L2 LINE L2 0 3313 3273 2069 100 50 0 chr1 21677853 21678134 -260515530 + AluSx SINE Alu 1 295 -17 508 271 169 58 chr1 21678134 21678429 -260515235 - L2 LINE L2 -40 3273 2933 521 289 19 24 chr1 21678916 21679124 -260514540 - L3 LINE CR1 -125 1452 1246 615 238 122 9 chr1 21679654 21679868 -260513796 - MIR SINE MIR 0 262 25 402 284 87 0 chr1 21679965 21680092 -260513572 - Charlie8 DNA MER1_type -2154 263 126 2260 103 13 10 chr1 21680112 21680423 -260513241 - AluSx SINE Alu 0 312 1 284 358 18 9 chr1 21680603 21680712 -260512952 - L3 LINE CR1 -1048 529 420 451 288 101 41 chr1 21680736 21680955 -260512709 + MIR SINE MIR 17 248 -14 363 295 49 0 chr1 21681335 21681457 -260512207 - L2 LINE L2 -1 3312 3185 218 105 26 0 chr1 21681601 21681639 -260512025 + (TCTA)n Simple_repeat Simple_repeat 2 40 0 419 221 159 0 chr1 21681709 21681822 -260511842 - L2 LINE L2 -3 3269 3139 473 313 25 10 chr1 21681848 21682046 -260511618 - MIR SINE MIR -13 249 49 218 352 125 5 chr1 21682184 21682400 -260511264 - L2 LINE L2 -1090 2224 1983 343 304 117 18 chr1 21682734 21682905 -260510759 + L2 LINE L2 3116 3303 -10 2002 122 3 26 chr1 21683077 21683388 -260510276 + AluJb SINE Alu 1 304 -8 226 297 33 25 chr1 21683517 21683713 -260509951 - MIR SINE MIR -13 249 5 632 206 0 28 chr1 21683747 21683888 -260509776 - AluJb SINE Alu 0 312 176 354 256 90 21 chr1 21683939 21684096 -260509568 - MIR SINE MIR -63 145 20 1841 154 7 0 chr1 21684576 21684855 -260508809 + AluSx SINE Alu 25 305 -7 1197 238 80 3 chr1 21685609 21685945 -260507719 - MER74B LTR ERVL -26 596 235 3776 140 52 25 chr1 21685968 21686039 -260507625 - MER50 LTR ERV1 -20 714 646 2005 97 34 4 chr1 21686039 21686306 -260507358 + AluSc SINE Alu 16 290 -19 3776 140 52 25 chr1 21686306 21686929 -260506735 - MER50 LTR ERV1 -88 646 1 558 212 55 27 chr1 21686929 21687075 -260506589 - MER74B LTR ERVL -414 208 59 290 170 0 0 chr1 21687144 21687197 -260506467 + MIR SINE MIR 90 142 -66 458 308 21 1 chr1 21688004 21688149 -260505515 + MIR SINE MIR 36 181 -63 427 229 114 65 chr1 21688153 21688415 -260505249 - ORSL DNA AcHobo 0 275 1 191 361 115 0 chr1 21688451 21688573 -260505091 - L2 LINE L2 -22 3250 3115 324 287 62 16 chr1 21689171 21689300 -260504364 + MIR3 SINE MIR 2 136 -72 422 286 8 8 chr1 21689701 21689820 -260503844 + MIR3 SINE MIR 78 196 -12 539 328 51 20 chr1 21689926 21690179 -260503485 - MIR SINE MIR 0 262 2 276 364 39 0 chr1 21690509 21690638 -260503026 - MIR SINE MIR -45 217 84 1352 261 161 16 chr1 21690648 21691158 -260502506 - MLT1G1 LTR MaLR -1 594 11 1185 189 41 5 chr1 21691164 21691420 -260502244 + L1MC3 LINE L1 6376 6669 -1174 306 188 165 0 chr1 21691421 21691506 -260502158 + L1MC3 LINE L1 7655 7753 -32 574 131 131 0 chr1 21691540 21691639 -260502025 + MER2 DNA MER2_type 1 112 -233 1081 56 0 0 chr1 21691653 21691778 -260501886 - AluY SINE Alu -19 292 168 1422 170 30 108 chr1 21691794 21692164 -260501500 + L1MC3 LINE L1 6616 6956 -829 1462 129 60 143 chr1 21692167 21692328 -260501336 + L1MC3 LINE L1 7355 7528 -257 2363 91 3 10 chr1 21692328 21692626 -260501038 + AluSp SINE Alu 1 296 -17 1462 129 60 143 chr1 21692626 21692899 -260500765 + L1MC3 LINE L1 7528 7753 -32 1236 184 48 52 chr1 21692945 21693055 -260500609 + MER2 DNA MER2_type 25 134 -211 1898 144 13 17 chr1 21693055 21693353 -260500311 - AluJb SINE Alu -15 297 1 1236 184 48 52 chr1 21693353 21693552 -260500112 + MER2 DNA MER2_type 134 333 -12 1091 247 20 0 chr1 21693600 21693851 -260499813 - MLT1J2 LTR MaLR -156 294 39 199 298 0 0 chr1 21694587 21694634 -260499030 + L2 LINE L2 3139 3185 -87 275 312 24 32 chr1 21695647 21695772 -260497892 + MIR SINE MIR 6 129 -133 376 323 102 12 chr1 21696572 21696739 -260496925 - MIR SINE MIR -24 184 2 512 168 10 0 chr1 21697402 21697503 -260496161 + CT-rich Low_complexity Low_complexity 1 102 0 1851 152 39 0 chr1 21697503 21697786 -260495878 - AluSq SINE Alu -19 294 1 304 358 54 0 chr1 21697826 21697974 -260495690 - MIR SINE MIR -86 176 21 1504 162 16 8 chr1 21697982 21698229 -260495435 - AluJo SINE Alu -19 293 45 1448 252 106 59 chr1 21698334 21698957 -260494707 + MLT2F LTR ERVL 1 652 -11 266 309 86 12 chr1 21698973 21699135 -260494529 + ERVL-F LTR ERVL 4 177 -5587 637 238 0 0 chr1 21699299 21699421 -260494243 + FLAM_C SINE Alu 2 123 -20 4225 247 91 35 chr1 21699458 21700729 -260492935 + ERVL LTR ERVL 2417 3759 -2005 424 191 204 0 chr1 21700872 21701008 -260492656 + Ricksha DNA DNA 184 351 -903 1441 298 85 34 chr1 21701008 21701633 -260492031 + MLT2F LTR ERVL 7 663 0 296 176 73 0 chr1 21701646 21701714 -260491950 + L2 LINE L2 3200 3272 0 194 265 20 0 chr1 21701739 21701788 -260491876 - L2 LINE L2 -86 3186 3137 298 350 113 0 chr1 21702630 21702824 -260490840 - MIR SINE MIR 0 262 47 250 233 33 0 chr1 21702879 21702939 -260490725 + L2 LINE L2 3194 3255 -17 2369 97 0 0 chr1 21703341 21703630 -260490034 + AluY SINE Alu 1 289 -22 213 311 98 16 chr1 21703642 21703764 -260489900 + MIR3 SINE MIR 7 138 -70 326 206 27 0 chr1 21703776 21703849 -260489815 - MER112 DNA MER1_type -1 259 185 2093 164 0 0 chr1 21704183 21704495 -260489169 + AluSx SINE Alu 1 312 0 528 380 32 5 chr1 21704679 21704900 -260488764 + MIR SINE MIR 24 250 -12 2043 155 0 0 chr1 21705583 21705873 -260487791 + AluJo SINE Alu 9 298 -14 190 302 0 16 chr1 21706189 21706252 -260487412 - MER5A DNA MER1_type -87 102 41 1602 194 6 38 chr1 21706591 21706905 -260486759 + AluJb SINE Alu 1 304 -8 313 287 20 10 chr1 21707597 21707698 -260485966 - MIR SINE MIR -63 145 44 242 219 57 29 chr1 21707859 21707964 -260485700 + LTR48 LTR ERV1 629 736 -51 1170 155 0 11 chr1 21707983 21708170 -260485494 + AluJb SINE Alu 122 306 -6 416 196 11 0 chr1 21708457 21708549 -260485115 - MER113 DNA MER1_type? -302 219 127 2179 129 0 13 chr1 21708569 21708900 -260484764 + AluSx SINE Alu 1 312 0 193 220 51 51 chr1 21709205 21709264 -260484400 + MER5A DNA MER1_type 7 65 -124 3224 118 39 32 chr1 21709296 21709496 -260484168 - MER4B LTR ERV1 -36 574 377 4220 78 0 0 chr1 21709496 21710050 -260483614 + MER41A LTR ERV1 1 554 0 3224 118 39 32 chr1 21710050 21710419 -260483245 - MER4B LTR ERV1 -233 377 1 370 267 8 38 chr1 21710419 21710550 -260483114 + MER5A DNA MER1_type 63 189 0 2753 177 75 9 chr1 21710569 21711117 -260482547 + LTR26E LTR ERV1 39 622 0 1826 99 34 0 chr1 21711242 21711475 -260482189 - AluSx SINE Alu -37 275 35 195 276 61 41 chr1 21711477 21711575 -260482089 + MIR SINE MIR 65 164 -98 254 240 58 58 chr1 21712156 21712212 -260481452 - MIR SINE MIR -100 162 104 4045 83 5 2 chr1 21712212 21712764 -260480900 + MER41A LTR ERV1 1 554 0 254 240 58 58 chr1 21712764 21712811 -260480853 - MIR SINE MIR -157 105 59 189 0 0 0 chr1 21712841 21712862 -260480802 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 202 409 22 11 chr1 21713003 21713184 -260480480 - L2 LINE L2 -179 3134 2952 27 0 0 0 chr1 21713303 21713330 -260480334 + AT_rich Low_complexity Low_complexity 1 27 0 391 234 170 21 chr1 21713830 21713971 -260479693 + MIR SINE MIR 22 183 -79 258 293 28 28 chr1 21714296 21714402 -260479262 - L2 LINE L2 0 3313 3208 2357 58 25 0 chr1 21714641 21714952 -260478712 + AluY SINE Alu 1 318 0 454 302 93 9 chr1 21715033 21715258 -260478406 + MLT1L LTR MaLR 372 615 0 1824 151 42 0 chr1 21715740 21716025 -260477639 + AluJb SINE Alu 7 303 -9 295 47 93 0 chr1 21716029 21716072 -260477592 - FLAM SINE Alu -6 127 81 2139 116 3 0 chr1 21716173 21716519 -260477145 - AluSq SINE Alu 0 347 1 592 165 71 8 chr1 21716519 21716646 -260477018 - L1MC1 LINE L1 -8 6325 6191 955 299 34 36 chr1 21716873 21717317 -260476347 - LTR16A1 LTR ERVL -14 443 1 218 250 170 18 chr1 21717346 21717458 -260476206 - L2 LINE L2 -7 3265 3137 234 413 8 0 chr1 21717746 21717872 -260475792 - L2 LINE L2 -5 3267 3141 194 244 0 0 chr1 21718705 21718746 -260474918 - L2 LINE L2 0 3313 3273 396 250 145 0 chr1 21718991 21719115 -260474549 + MIR SINE MIR 121 262 0 238 253 172 0 chr1 21719228 21719327 -260474337 + MIR SINE MIR 35 150 -112 323 278 205 7 chr1 21719408 21719559 -260474105 - MIR SINE MIR -26 236 56 793 224 50 18 chr1 21720002 21720221 -260473443 - MIR SINE MIR -1 261 36 182 269 0 0 chr1 21720233 21720285 -260473379 + MIR SINE MIR 156 207 -55 200 208 338 0 chr1 21720409 21720486 -260473178 + L2 LINE L2 3191 3293 -20 356 183 0 0 chr1 21720872 21720943 -260472721 + AluJb SINE Alu 1 51 -250 * 375 172 0 0 chr1 21720929 21720987 -260472677 - AluS SINE Alu -15 285 228 1424 161 85 0 chr1 21720988 21721224 -260472440 + AluJb SINE Alu 38 293 -19 651 168 112 6 chr1 21721310 21721484 -260472180 - L1MD3 LINE L1 -4 7991 7588 236 289 44 33 chr1 21721493 21721583 -260472081 - MIR SINE MIR -151 111 21 383 320 105 7 chr1 21722842 21722995 -260470669 - MIR SINE MIR -48 214 47 185 0 0 39 chr1 21723919 21723945 -260469719 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1636 162 56 0 chr1 21723952 21724274 -260469390 - AluJo SINE Alu 0 342 6 488 288 72 97 chr1 21724294 21724595 -260469069 - L1ME4a LINE L1 -5 6116 5836 2178 111 3 0 chr1 21724595 21724884 -260468780 + AluSg1 SINE Alu 1 290 -19 488 288 72 97 chr1 21724884 21725169 -260468495 - L1ME4a LINE L1 -285 5836 5545 577 326 32 0 chr1 21725880 21726067 -260467597 + MIR SINE MIR 32 224 -38 559 277 64 56 chr1 21726098 21726347 -260467317 + MIR SINE MIR 6 256 -6 189 74 0 0 chr1 21726372 21726399 -260467265 + (CAT)n Simple_repeat Simple_repeat 3 29 0 438 222 34 118 chr1 21726420 21726590 -260467074 - L1MEc LINE L1 -5278 1118 935 2043 139 7 0 chr1 21726590 21726877 -260466787 - AluSx SINE Alu -23 289 1 438 222 34 118 chr1 21726877 21726907 -260466757 - L1MEc LINE L1 -5461 935 904 1517 163 20 67 chr1 21726907 21726989 -260466675 + MER44D DNA MER2_type 1 85 -2406 2021 128 18 0 chr1 21726989 21727290 -260466374 - AluSc SINE Alu 0 306 1 1517 163 20 67 chr1 21727290 21727562 -260466102 + MER44D DNA MER2_type 85 609 0 438 222 34 118 chr1 21727562 21727657 -260466007 - L1MEc LINE L1 -5492 904 847 306 224 0 0 chr1 21727633 21727700 -260465964 - L1ME LINE L1 -454 5736 5670 * 1817 141 0 85 chr1 21727703 21727846 -260465818 + AluJb SINE Alu 1 104 -208 2160 146 0 0 chr1 21727846 21728154 -260465510 + AluJb SINE Alu 1 308 -4 1817 141 0 85 chr1 21728154 21728329 -260465335 + AluJb SINE Alu 104 292 -20 609 280 98 0 chr1 21728638 21728831 -260464833 - MIR SINE MIR -3 259 48 190 271 62 0 chr1 21728890 21728938 -260464726 - MIR SINE MIR -84 178 128 1199 262 64 20 chr1 21729370 21729778 -260463886 + L1ME3A LINE L1 5727 6152 -18 1787 148 11 0 chr1 21729841 21730111 -260463553 + AluJo SINE Alu 21 293 -19 377 259 162 4 chr1 21730202 21730398 -260463266 + MIR SINE MIR 19 247 -15 336 331 0 44 chr1 21730744 21730880 -260462784 + MIR SINE MIR 118 247 -15 239 275 17 67 chr1 21730968 21731088 -260462576 - L2 LINE L2 -5 3267 3154 945 158 30 0 chr1 21731909 21732074 -260461590 - L1MB3 LINE L1 -215 5968 5799 2320 87 0 6 chr1 21732100 21732411 -260461253 + AluSc SINE Alu 1 309 0 293 163 68 95 chr1 21732424 21732542 -260461122 - L1MB7 LINE L1 -10 6174 6059 2009 148 0 0 chr1 21732542 21732846 -260460818 - AluJb SINE Alu -8 304 1 293 163 68 95 chr1 21732846 21732874 -260460790 - L1MB7 LINE L1 -125 6059 6032 2459 130 3 8 chr1 21732991 21733368 -260460296 + MLT1B LTR MaLR 16 390 0 223 179 0 0 chr1 21733609 21733648 -260460016 + MIR SINE MIR 116 154 -108 239 119 34 17 chr1 21733765 21733824 -260459840 - L1MB7 LINE L1 -77 6107 6048 2755 191 37 36 chr1 21733958 21734723 -260458941 - L1ME1 LINE L1 -189 5977 5214 1855 147 0 29 chr1 21734723 21735035 -260458629 - AluSx SINE Alu -9 303 1 2755 191 37 36 chr1 21735035 21735076 -260458588 - L1ME1 LINE L1 -952 5214 5175 2340 92 0 0 chr1 21735076 21735379 -260458285 - AluSq SINE Alu -10 303 1 2755 191 37 36 chr1 21735379 21735553 -260458111 - L1ME1 LINE L1 -991 5175 4992 2181 150 35 3 chr1 21735561 21735934 -260457730 - L1MB3 LINE L1 0 6183 5799 948 118 0 15 chr1 21735960 21736095 -260457569 + FLAM_C SINE Alu 1 133 0 1509 184 28 83 chr1 21736097 21736520 -260457144 - L1MB7 LINE L1 -10 6174 5775 2516 90 22 30 chr1 21736538 21736905 -260456759 - THE1B LTR MaLR 0 364 1 2288 172 20 3 chr1 21736905 21737510 -260456154 - L1MB7 LINE L1 -524 5650 5032 2032 138 0 3 chr1 21737511 21737816 -260455848 - AluSx SINE Alu -2 310 7 1219 154 0 47 chr1 21737828 21738088 -260455576 - AluJo SINE Alu 0 312 84 937 160 47 0 chr1 21738088 21738257 -260455407 - L1MB7 LINE L1 -1107 5039 4863 561 197 13 7 chr1 21738369 21738521 -260455143 + CT-rich Low_complexity Low_complexity 2 154 0 5210 227 41 33 chr1 21738524 21738706 -260454958 - L1ME1 LINE L1 -1212 4934 4755 1675 159 51 0 chr1 21738706 21738864 -260454800 - AluJo SINE Alu -22 290 111 189 0 0 0 chr1 21738864 21738885 -260454779 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1675 159 51 0 chr1 21738885 21739002 -260454662 - AluJo SINE Alu -201 111 1 5210 227 41 33 chr1 21739002 21739734 -260453930 - L1ME1 LINE L1 -1391 4755 4031 2233 98 7 0 chr1 21739734 21740039 -260453625 - AluSx SINE Alu -5 307 1 5210 227 41 33 chr1 21740039 21740485 -260453179 - L1ME1 LINE L1 -2115 4031 3556 2056 168 22 59 chr1 21740485 21740890 -260452774 + MLT1B LTR MaLR 1 390 0 5210 227 41 33 chr1 21740890 21741079 -260452585 - L1ME1 LINE L1 -2590 3556 3370 300 304 242 16 chr1 21741253 21741447 -260452217 - L1ME LINE L1 -266 5855 5618 760 167 0 8 chr1 21742419 21742545 -260451119 - FLAM_C SINE Alu -12 131 7 186 348 33 0 chr1 21742659 21742751 -260450913 - MIR SINE MIR -110 152 58 1527 206 45 47 chr1 21742957 21743359 -260450305 + MER31A LTR ERV1 85 485 0 180 287 31 101 chr1 21743911 21744040 -260449624 - MIR3 SINE MIR -41 167 48 409 232 17 57 chr1 21745542 21745719 -260447945 + (TG)n Simple_repeat Simple_repeat 2 171 0 191 111 0 22 chr1 21745742 21745787 -260447877 + (TG)n Simple_repeat Simple_repeat 2 45 0 234 222 0 0 chr1 21746133 21746178 -260447486 - MIR SINE MIR -109 153 109 337 237 54 0 chr1 21746542 21746635 -260447029 + MIR SINE MIR 45 142 -66 631 343 29 8 chr1 21747209 21747448 -260446216 + MIR SINE MIR 4 247 -15 201 328 80 24 chr1 21748208 21748333 -260445331 + L2 LINE L2 3180 3311 -2 389 256 90 15 chr1 21748640 21748773 -260444891 + MIR3 SINE MIR 34 176 -32 424 202 31 54 chr1 21749020 21749047 -260444617 + MER53 DNA DNA 1 27 -162 2050 127 0 10 chr1 21749047 21749361 -260444303 + AluSx SINE Alu 1 311 -1 424 202 31 54 chr1 21749361 21749462 -260444202 + MER53 DNA DNA 27 126 -63 23 0 0 0 chr1 21749473 21749496 -260444168 + AT_rich Low_complexity Low_complexity 1 23 0 243 146 31 167 chr1 21749503 21749537 -260444127 + MER53 DNA DNA 95 132 -57 2168 108 0 0 chr1 21749537 21749832 -260443832 - AluSc SINE Alu -14 295 1 243 146 31 167 chr1 21749832 21749857 -260443807 + MER53 DNA DNA 132 159 -30 252 0 0 0 chr1 21749857 21749885 -260443779 + (TTAA)n Simple_repeat Simple_repeat 1 28 0 1620 150 25 4 chr1 21749885 21750159 -260443505 - AluJo SINE Alu -32 280 1 243 146 31 167 chr1 21750159 21750193 -260443471 + MER53 DNA DNA 157 177 -12 228 289 41 21 chr1 21750329 21750409 -260443255 - MER5A DNA MER1_type -83 106 25 395 266 58 53 chr1 21750409 21750597 -260443067 + MIR3 SINE MIR 4 192 -16 837 194 11 33 chr1 21751379 21751559 -260442105 + MER5A DNA MER1_type 5 180 -9 2353 80 0 3 chr1 21751699 21752001 -260441663 - AluSq SINE Alu -11 302 2 254 288 14 0 chr1 21752109 21752182 -260441482 + MIR3 SINE MIR 83 156 -52 571 241 167 0 chr1 21752183 21752345 -260441319 - MER5A DNA MER1_type 0 189 1 2331 85 3 0 chr1 21754989 21755295 -260438369 - AluSq SINE Alu -6 307 1 2630 39 0 0 chr1 21755742 21756053 -260437611 - AluY SINE Alu 0 311 1 518 274 34 34 chr1 21756946 21757154 -260436510 + MIR SINE MIR 20 227 -35 223 170 0 21 chr1 21757347 21757394 -260436270 + G-rich Low_complexity Low_complexity 6 51 0 22 0 0 0 chr1 21757686 21757708 -260435956 + AT_rich Low_complexity Low_complexity 1 22 0 2211 75 0 41 chr1 21757717 21758036 -260435628 + AluY SINE Alu 1 306 -5 232 258 32 0 chr1 21758147 21758209 -260435455 - MIR SINE MIR -41 221 158 356 273 8 61 chr1 21758209 21758341 -260435323 + LTR2 LTR ERV1 1 125 -324 874 217 0 5 chr1 21758389 21758573 -260435091 + LTR2 LTR ERV1 266 448 -1 14000 179 20 14 chr1 21758574 21761069 -260432595 + HERVE LTR ERV1 1 2512 -5301 21115 137 2 10 chr1 21761069 21764234 -260429430 + HERVE LTR ERV1 2686 5822 -1991 563 176 0 0 chr1 21764264 21764355 -260429309 + HERVE LTR ERV1 5915 6005 -1808 278 190 52 0 chr1 21764358 21764416 -260429248 + Harlequin LTR ERV1 5468 5528 -1368 * 448 104 0 0 chr1 21764414 21764481 -260429183 + Harlequin LTR ERV1 6829 6895 -1 424 266 18 71 chr1 21764481 21764650 -260429014 + LTR2 LTR ERV1 1 160 -289 * 772 166 0 152 chr1 21764646 21764863 -260428801 + LTR2 LTR ERV1 266 449 0 326 274 171 8 chr1 21764863 21764980 -260428684 - MIR SINE MIR -100 162 27 309 304 63 38 chr1 21765015 21765173 -260428491 + MIR3 SINE MIR 2 163 -45 255 256 50 33 chr1 21765145 21765266 -260428398 - L2 LINE L2 -190 3123 3001 * 385 242 95 33 chr1 21765287 21765498 -260428166 - L2 LINE L2 -559 2755 2532 298 257 169 7 chr1 21765556 21765704 -260427960 - L2 LINE L2 -766 2548 2377 234 332 49 58 chr1 21765732 21765955 -260427709 + L2 LINE L2 2951 3171 -101 2019 125 0 0 chr1 21766205 21766492 -260427172 + AluSx SINE Alu 1 287 -25 378 237 0 21 chr1 21767002 21767095 -260426569 + L2 LINE L2 3221 3311 -2 2049 244 62 2 chr1 21767268 21767765 -260425899 - MLT1H LTR MaLR -7 542 16 252 327 38 44 chr1 21767898 21768057 -260425607 + L2 LINE L2 3096 3253 -60 432 260 0 0 chr1 21768544 21768690 -260424974 + (TG)n Simple_repeat Simple_repeat 2 147 0 866 325 136 20 chr1 21768863 21769793 -260423871 + L2 LINE L2 2260 3313 0 605 236 6 0 chr1 21769921 21770095 -260423569 + (TG)n Simple_repeat Simple_repeat 2 176 0 247 135 269 0 chr1 21770193 21770245 -260423419 + MIR SINE MIR 84 149 -113 243 353 6 19 chr1 21770856 21771012 -260422652 + CT-rich Low_complexity Low_complexity 6 159 0 1003 306 141 33 chr1 21771371 21772284 -260421380 + L2 LINE L2 2125 3235 -78 281 309 34 14 chr1 21772376 21772527 -260421137 + MIR SINE MIR 31 143 -65 282 270 135 0 chr1 21772529 21772640 -260421024 - L2 LINE L2 0 3272 3147 223 296 28 14 chr1 21772679 21772750 -260420914 - L2 LINE L2 -78 3194 3123 2017 133 3 7 chr1 21773423 21773732 -260419932 - AluJo SINE Alu -4 308 1 405 276 122 0 chr1 21773898 21774021 -260419643 - MIR SINE MIR -12 250 113 385 308 66 5 chr1 21774254 21774460 -260419204 + MIR SINE MIR 34 261 -1 217 300 0 0 chr1 21774444 21774494 -260419170 - MIR SINE MIR -101 161 112 * 347 289 18 9 chr1 21774567 21774681 -260418983 + MIR3 SINE MIR 91 205 -3 * 376 304 54 0 chr1 21774667 21774779 -260418885 + L2 LINE L2 3147 3264 -8 212 259 19 0 chr1 21774819 21774873 -260418791 - MIR SINE MIR -130 78 24 2632 26 0 7 chr1 21776005 21776315 -260417349 - AluY SINE Alu -3 308 1 226 280 13 40 chr1 21776602 21776677 -260416987 + L2 LINE L2 3232 3304 -9 229 175 0 0 chr1 21776780 21776820 -260416844 - L2 LINE L2 -12 3301 3262 296 314 82 48 chr1 21777256 21777279 -260416385 - MIR SINE MIR -3 259 238 1565 179 6 28 chr1 21777279 21777598 -260416066 + AluJo SINE Alu 1 312 0 296 314 82 48 chr1 21777598 21777781 -260415883 - MIR SINE MIR -24 238 46 368 318 32 8 chr1 21777783 21777909 -260415755 - L2 LINE L2 0 3272 3144 398 345 91 18 chr1 21778171 21778391 -260415273 + MIR SINE MIR 21 256 -6 767 224 79 0 chr1 21778860 21779025 -260414639 - MER45A DNA AcHobo 0 178 1 331 213 0 0 chr1 21779026 21779087 -260414577 - MER45A DNA AcHobo -117 61 1 344 312 9 0 chr1 21779911 21780020 -260413644 + L1ME LINE L1 5671 5780 -341 2281 82 0 29 chr1 21780155 21780471 -260413193 - AluSq SINE Alu -6 307 1 315 306 16 67 chr1 21780493 21780686 -260412978 + HAL1 LINE L1 2325 2507 0 193 327 0 0 chr1 21782110 21782162 -260411502 + MIR SINE MIR 102 153 -109 445 256 85 0 chr1 21782185 21782314 -260411350 - MIR SINE MIR -44 218 79 191 319 72 0 chr1 21783121 21783190 -260410474 + L2 LINE L2 3200 3273 -40 332 295 22 66 chr1 21783252 21783435 -260410229 + LTR16A LTR ERVL 121 295 -155 225 0 0 0 chr1 21783465 21783490 -260410174 + (TG)n Simple_repeat Simple_repeat 2 26 0 207 0 0 0 chr1 21783774 21783797 -260409867 + (TG)n Simple_repeat Simple_repeat 2 24 0 228 355 0 0 chr1 21783807 21783945 -260409719 + (TCTCTG)n Simple_repeat Simple_repeat 6 143 0 297 0 0 0 chr1 21783988 21784021 -260409643 + (TG)n Simple_repeat Simple_repeat 1 33 0 262 253 36 36 chr1 21784556 21784639 -260409025 - L2 LINE L2 -183 3089 3007 576 246 42 9 chr1 21784668 21784853 -260408811 - MIR SINE MIR -65 143 3 341 239 0 45 chr1 21785206 21785294 -260408370 + L2 LINE L2 3151 3234 -38 564 262 47 7 chr1 21785311 21785460 -260408204 - MIR SINE MIR -1 261 107 299 319 89 47 chr1 21785580 21785771 -260407893 - MIR SINE MIR -48 214 16 1996 120 0 128 chr1 21786437 21786836 -260406828 + MER7A DNA MER2_type 1 346 0 265 311 107 29 chr1 21787253 21787356 -260406308 - L2 LINE L2 -21 3251 3141 669 263 78 11 chr1 21787402 21787581 -260406083 - MIR SINE MIR -48 214 24 299 266 129 66 chr1 21787865 21788136 -260405528 - L2 LINE L2 -174 3098 2811 312 27 0 0 chr1 21788444 21788481 -260405183 + (CA)n Simple_repeat Simple_repeat 1 37 0 403 308 38 57 chr1 21788861 21789124 -260404540 - L2 LINE L2 -1763 1551 1294 1781 134 65 20 chr1 21789124 21789416 -260404248 + AluJb SINE Alu 1 305 -7 185 302 111 35 chr1 21789931 21790103 -260403561 - MIR3 SINE MIR -21 187 3 198 91 0 0 chr1 21790249 21790282 -260403382 + (CCCGA)n Simple_repeat Simple_repeat 1 33 0 424 251 18 140 chr1 21793167 21793440 -260400224 - MIR3 SINE MIR -10 252 15 939 150 0 0 chr1 21793870 21794010 -260399654 + AluSg/x SINE Alu 173 312 0 565 213 59 15 chr1 21794066 21794202 -260399462 + MIR3 SINE MIR 4 145 -63 1024 182 31 0 chr1 21794226 21794418 -260399246 + MER58 DNA MER1_type 1 198 -2222 209 250 154 44 chr1 21794506 21794642 -260399022 + L2 LINE L2 3113 3263 -50 441 227 110 19 chr1 21799604 21799758 -260393906 - L2 LINE L2 -614 2700 2533 2073 145 3 3 chr1 21800737 21801047 -260392617 - AluSx SINE Alu 0 312 3 643 266 180 61 chr1 21801111 21801286 -260392378 - L2 LINE L2 -4 3309 3156 2323 61 51 3 chr1 21801286 21801582 -260392082 + AluSg SINE Alu 1 310 0 643 266 180 61 chr1 21801582 21802116 -260391548 - L2 LINE L2 -157 3156 2534 480 245 114 72 chr1 21802293 21802767 -260390897 - L1ME4a LINE L1 -37 6084 5591 224 257 68 54 chr1 21803254 21803328 -260390336 - L2 LINE L2 -75 3197 3123 354 336 110 7 chr1 21804145 21804291 -260389373 + MER5B DNA MER1_type 18 178 0 209 278 19 0 chr1 21804291 21804344 -260389320 + MIR3 SINE MIR 148 201 -7 226 333 137 20 chr1 21804590 21804743 -260388921 + MIR SINE MIR 92 262 0 424 279 140 7 chr1 21804781 21804917 -260388747 - L2 LINE L2 -1 3271 3118 439 195 58 0 chr1 21804942 21805029 -260388635 + L2 LINE L2 3222 3313 0 211 358 55 28 chr1 21805130 21805239 -260388425 + L2 LINE L2 3132 3243 -29 331 250 190 0 chr1 21805901 21806001 -260387663 - L2 LINE L2 -1 3271 3153 197 312 96 24 chr1 21806246 21806371 -260387293 + L3 LINE CR1 1432 1565 -12 410 274 126 29 chr1 21806880 21807055 -260386609 + L2 LINE L2 3104 3295 -18 584 256 40 62 chr1 21807277 21807504 -260386160 + MIR SINE MIR 5 226 -36 458 312 64 0 chr1 21808169 21808326 -260385338 - MIR SINE MIR -48 214 48 2427 80 0 0 chr1 21809040 21809341 -260384323 + AluY SINE Alu 1 301 -10 389 325 143 28 chr1 21809434 21810012 -260383652 - L2 LINE L2 -7 3265 2620 194 250 25 0 chr1 21810383 21810423 -260383241 - L2 LINE L2 -11 3261 3221 760 188 0 15 chr1 21810443 21810603 -260383061 - FLAM_A SINE Alu 0 133 1 1011 178 0 12 chr1 21810793 21810956 -260382708 - FRAM SINE Alu -14 162 2 2192 121 0 29 chr1 21810971 21811286 -260382378 - AluSx SINE Alu -6 306 1 603 62 0 12 chr1 21811843 21811923 -260381741 - MADE1 DNA Mariner 0 80 2 1296 174 5 14 chr1 21812229 21812447 -260381217 + AluJo SINE Alu 82 297 -15 855 95 26 0 chr1 21813057 21813173 -260380491 + FLAM_C SINE Alu 1 119 -24 347 271 136 7 chr1 21814454 21814609 -260379055 - MIR3 SINE MIR -20 188 14 257 321 76 15 chr1 21814623 21814661 -260379003 + L2 LINE L2 3175 3209 -104 2023 148 6 6 chr1 21814661 21814972 -260378692 - AluJo SINE Alu -1 311 1 257 321 76 15 chr1 21814972 21815064 -260378600 + L2 LINE L2 3209 3313 0 258 277 14 113 chr1 21817074 21817215 -260376449 + MIR3 SINE MIR 52 178 -30 198 0 0 0 chr1 21817223 21817245 -260376419 + (A)n Simple_repeat Simple_repeat 1 22 0 2200 76 38 17 chr1 21818165 21818455 -260375209 + AluSp SINE Alu 1 296 -17 897 249 56 13 chr1 21820404 21820637 -260373027 + MIR SINE MIR 13 255 -7 652 296 53 59 chr1 21820687 21821028 -260372636 + MLT1I LTR MaLR 71 409 0 1887 152 6 38 chr1 21821195 21821511 -260372153 - AluJo SINE Alu -6 306 1 1646 184 0 7 chr1 21821606 21821883 -260371781 + AluJo SINE Alu 24 298 -14 257 206 93 62 chr1 21822545 21822642 -260371022 + MIR3 SINE MIR 106 205 -3 1943 169 0 0 chr1 21822732 21823027 -260370637 - AluJb SINE Alu -17 295 1 252 291 36 36 chr1 21823269 21823434 -260370230 - L1ME4a LINE L1 -14 6107 5943 1776 96 0 0 chr1 21823516 21823735 -260369929 + AluSq SINE Alu 1 219 -94 754 133 0 0 chr1 21823735 21823869 -260369795 + AluSp/q SINE Alu 188 321 0 378 263 81 6 chr1 21823888 21824048 -260369616 - L1ME4a LINE L1 -303 5818 5647 562 261 25 53 chr1 21824979 21825139 -260368525 - MIR SINE MIR -2 260 103 2429 82 0 0 chr1 21825139 21825433 -260368231 + AluSq SINE Alu 1 294 -19 562 261 25 53 chr1 21825433 21825519 -260368145 - MIR SINE MIR -159 103 16 263 272 158 9 chr1 21826418 21826532 -260367132 - L2 LINE L2 -1 3312 3182 1122 320 91 37 chr1 21827159 21827941 -260365723 + L2 LINE L2 2034 2857 -457 237 338 0 0 chr1 21828261 21828335 -260365329 + L2 LINE L2 3231 3304 -9 2711 102 40 26 chr1 21829952 21830372 -260363292 - MSTA LTR MaLR -2 426 1 331 270 245 19 chr1 21830885 21831044 -260362620 + MIR SINE MIR 17 211 -51 2080 109 7 3 chr1 21831678 21832010 -260361654 + AluSx SINE Alu 1 333 0 248 335 52 0 chr1 21832177 21832332 -260361332 - L2 LINE L2 -1195 2119 1957 * 595 273 95 30 chr1 21832327 21832558 -260361106 - MIR SINE MIR -2 260 15 846 270 22 4 chr1 21832627 21832853 -260360811 - LTR16A LTR ERVL -7 443 214 383 314 73 0 chr1 21833031 21833155 -260360509 + MIR SINE MIR 45 177 -85 390 235 133 87 chr1 21833906 21834026 -260359638 - MIR SINE MIR -6 256 122 2038 100 7 27 chr1 21834026 21834327 -260359337 + AluSx SINE Alu 1 295 -17 390 235 133 87 chr1 21834327 21834402 -260359262 - MIR SINE MIR -140 122 52 210 263 112 20 chr1 21835086 21835178 -260358486 + MIR SINE MIR 47 145 -63 1543 231 54 39 chr1 21835314 21835443 -260358221 - MER113 DNA MER1_type? -51 470 344 1976 147 0 0 chr1 21835443 21835743 -260357921 - AluSx SINE Alu -12 300 1 1543 231 54 39 chr1 21835743 21836076 -260357588 - MER113 DNA MER1_type? -177 344 1 2154 115 0 10 chr1 21836289 21836593 -260357071 + AluSx SINE Alu 1 301 -11 3858 131 69 29 chr1 21836613 21837612 -260356052 - MER11A LTR ERVK 0 1266 1 253 341 3 0 chr1 21837622 21837692 -260355972 + MIR SINE MIR 40 111 -97 673 276 40 27 chr1 21837711 21837936 -260355728 - MIR SINE MIR -1 261 34 198 268 171 12 chr1 21837936 21838018 -260355646 + MIR SINE MIR 156 250 -12 884 303 38 58 chr1 21840616 21841061 -260352603 + MLT1K LTR MaLR 67 502 -86 243 388 23 0 chr1 21841134 21841263 -260352401 + L2 LINE L2 2713 2844 -470 5911 157 2 4 chr1 21841672 21842591 -260351073 + MER49 LTR ERV1 7 923 0 426 281 118 31 chr1 21842660 21842676 -260350988 - L2 LINE L2 -411 2903 2890 2280 75 0 13 chr1 21842676 21842981 -260350683 + AluY SINE Alu 1 301 -10 426 281 118 31 chr1 21842981 21843192 -260350472 - L2 LINE L2 -424 2890 2656 3764 129 81 94 chr1 21843230 21843433 -260350231 + MER4D LTR ERV1 9 213 -659 2083 125 0 0 chr1 21843433 21843728 -260349936 + AluSx SINE Alu 1 295 -17 3764 129 81 94 chr1 21843728 21843834 -260349830 + MER4D LTR ERV1 213 319 -553 2011 107 0 0 chr1 21843834 21844130 -260349534 - AluSx SINE Alu 0 307 12 3764 129 81 94 chr1 21844130 21844691 -260348973 + MER4D LTR ERV1 319 870 -2 649 285 144 52 chr1 21844691 21845157 -260348507 - L2 LINE L2 -695 2619 2111 184 268 18 18 chr1 21845268 21845324 -260348340 + L2 LINE L2 3217 3272 0 235 332 89 74 chr1 21845532 21845722 -260347942 - MIR SINE MIR -50 212 20 180 297 99 18 chr1 21846430 21846541 -260347123 - L2 LINE L2 -800 2514 2395 185 220 0 51 chr1 21847136 21847195 -260346469 + MIR3 SINE MIR 117 172 -36 415 250 275 25 chr1 21847720 21847930 -260345734 + MIR SINE MIR 2 261 -1 1095 237 88 101 chr1 21848314 21848545 -260345119 + MLT1H LTR MaLR 1 233 -316 621 204 9 0 chr1 21848545 21848658 -260345006 + MER81 DNA DNA 1 114 0 1095 237 88 101 chr1 21848658 21848982 -260344682 + MLT1H LTR MaLR 233 549 0 703 329 101 29 chr1 21849078 21849542 -260344122 - L2 LINE L2 -1 3271 2783 1627 200 84 14 chr1 21849667 21850037 -260343627 - MSTD LTR MaLR 0 396 1 613 269 83 37 chr1 21850464 21850706 -260342958 - L2 LINE L2 0 3313 3061 301 315 105 14 chr1 21851112 21851255 -260342409 + L2 LINE L2 2916 3071 -201 1186 258 67 76 chr1 21851255 21851779 -260341885 - MLT1H LTR MaLR 0 549 31 429 318 45 0 chr1 21851863 21852039 -260341625 + L2 LINE L2 3130 3313 0 4172 80 2 33 chr1 21852496 21852817 -260340847 + MER41A LTR ERV1 1 298 -256 1326 90 0 47 chr1 21852817 21853029 -260340635 + L1PA7 LINE L1 5953 6154 0 4172 80 2 33 chr1 21853029 21853279 -260340385 + MER41A LTR ERV1 298 554 0 385 320 66 35 chr1 21853322 21853581 -260340083 + L2 LINE L2 2816 3082 -190 250 246 130 0 chr1 21853733 21853802 -260339862 + MIR SINE MIR 182 259 -3 2174 182 35 45 chr1 21854068 21854578 -260339086 + MLT1D LTR MaLR 1 505 0 186 227 0 0 chr1 21854601 21854645 -260339019 + GA-rich Low_complexity Low_complexity 1 44 0 4846 84 9 0 chr1 21855375 21856020 -260337644 - L1PA10 LINE L1 -5 6163 5513 1613 71 22 0 chr1 21856026 21856252 -260337412 + L1PA10 LINE L1 5254 5484 -684 429 272 84 94 chr1 21856274 21856583 -260337081 + L2 LINE L2 2952 3257 -56 2088 147 2 91 chr1 21856635 21857063 -260336601 + MLT1B LTR MaLR 1 390 0 669 251 80 40 chr1 21857137 21857590 -260336074 - LTR33 LTR ERVL -16 505 1 270 239 194 75 chr1 21857960 21858034 -260335630 - MIR SINE MIR -8 254 190 710 189 0 8 chr1 21858034 21858161 -260335503 + FLAM_A SINE Alu 2 127 -6 270 239 194 75 chr1 21858161 21858220 -260335444 - MIR SINE MIR -72 190 105 592 249 96 35 chr1 21858350 21858579 -260335085 - MIR SINE MIR 0 262 20 270 133 89 0 chr1 21858795 21858840 -260334824 - MER20 DNA MER1_type -2 217 169 201 39 0 0 chr1 21858843 21858869 -260334795 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1858 88 36 0 chr1 21858872 21859123 -260334541 - AluSx SINE Alu -32 280 21 492 195 23 62 chr1 21859567 21859695 -260333969 - MER20 DNA MER1_type -39 180 58 338 330 28 51 chr1 21859888 21860064 -260333600 + MIR SINE MIR 20 191 -71 197 336 30 103 chr1 21860643 21860875 -260332789 + L2 LINE L2 3016 3230 -42 602 270 58 93 chr1 21860876 21861386 -260332278 + MLT1J LTR MaLR 3 600 -15 2062 138 0 0 chr1 21861549 21861853 -260331811 - AluSq SINE Alu -7 306 3 222 335 71 41 chr1 21862079 21862249 -260331415 - L2 LINE L2 -83 3189 3015 350 303 118 10 chr1 21862262 21862457 -260331207 + MIR SINE MIR 47 262 0 296 258 15 0 chr1 21862916 21862982 -260330682 + MIR3 SINE MIR 94 160 -48 697 211 41 35 chr1 21862983 21863154 -260330510 + MER5B DNA MER1_type 2 173 -5 451 331 11 11 chr1 21863191 21863366 -260330298 + MIR SINE MIR 68 242 -20 417 309 29 22 chr1 21863707 21863843 -260329821 - MIR3 SINE MIR -27 181 45 318 26 0 0 chr1 21863845 21863884 -260329780 + (A)n Simple_repeat Simple_repeat 1 39 0 21 0 0 0 chr1 21863900 21863921 -260329743 + AT_rich Low_complexity Low_complexity 1 21 0 435 239 68 34 chr1 21864444 21864561 -260329103 + MIR SINE MIR 142 262 0 982 298 116 18 chr1 21864586 21865042 -260328622 - LTR33 LTR ERVL 0 521 21 755 273 93 5 chr1 21865550 21865766 -260327898 + MIR SINE MIR 28 262 0 278 250 148 9 chr1 21865769 21865877 -260327787 + L2 LINE L2 3145 3267 -5 * 433 299 37 8 chr1 21865871 21866005 -260327659 - MIR SINE MIR -94 168 31 807 175 127 0 chr1 21866022 21866188 -260327476 - MER5A DNA MER1_type -2 187 1 701 113 0 16 chr1 21866564 21866688 -260326976 + (TTCC)n Simple_repeat Simple_repeat 1 122 0 2159 131 0 0 chr1 21866727 21867039 -260326625 - AluSx SINE Alu 0 312 1 378 294 20 0 chr1 21867518 21867620 -260326044 - MLT1L LTR MaLR -4 611 508 535 309 52 0 chr1 21867741 21867935 -260325729 + MIR SINE MIR 43 246 -16 2237 177 78 9 chr1 21868275 21868711 -260324953 - MLT1C LTR MaLR -1 466 1 372 307 53 7 chr1 21868731 21868881 -260324783 + L2 LINE L2 2895 3051 -221 538 224 191 0 chr1 21869058 21869210 -260324454 + MER5A DNA MER1_type 9 189 0 * 634 241 40 23 chr1 21869210 21869382 -260324282 + MIR SINE MIR 88 262 0 554 300 27 25 chr1 21869901 21870111 -260323553 - MIR SINE MIR -24 238 30 2022 125 0 7 chr1 21870292 21870597 -260323067 - AluSx SINE Alu -3 309 7 476 305 0 8 chr1 21870874 21871005 -260322659 - MIR SINE MIR -106 156 27 239 157 0 0 chr1 21871411 21871462 -260322202 + MER113 DNA MER1_type? 63 113 -408 347 221 176 43 chr1 21871652 21871816 -260321848 - MIR SINE MIR -61 147 16 2546 47 3 6 chr1 21872004 21872322 -260321342 - L1PA5 LINE L1 0 6154 5838 685 263 20 21 chr1 21873263 21873499 -260320165 + MLT1G1 LTR MaLR 1 239 -310 410 103 206 0 chr1 21873560 21873628 -260320036 + MLT1B LTR MaLR 21 81 -293 1232 200 34 37 chr1 21873688 21873983 -260319681 + MLT1B LTR MaLR 97 390 0 361 298 32 0 chr1 21874091 21874185 -260319479 + L2 LINE L2 2514 2610 -704 302 288 27 77 chr1 21874355 21874577 -260319087 - MLT1H LTR MaLR -257 292 82 662 276 114 35 chr1 21874695 21874949 -260318715 + L2 LINE L2 2696 2984 -288 2602 113 6 3 chr1 21874949 21875312 -260318352 + THE1B LTR MaLR 1 364 0 662 276 114 35 chr1 21875312 21875421 -260318243 + L2 LINE L2 2984 3083 -189 2649 126 5 0 chr1 21875441 21875823 -260317841 + MLT1B LTR MaLR 1 384 -6 373 230 246 8 chr1 21875883 21876009 -260317655 + L2 LINE L2 3117 3272 0 215 333 9 9 chr1 21876573 21876678 -260316986 + CT-rich Low_complexity Low_complexity 1 105 0 334 266 169 8 chr1 21877318 21877442 -260316222 + MIR SINE MIR 117 260 -2 289 240 125 0 chr1 21877870 21877974 -260315690 + L2 LINE L2 3180 3296 -17 1113 135 0 2 chr1 21877974 21878497 -260315167 + (TGGA)n Simple_repeat Simple_repeat 1 521 0 220 345 27 9 chr1 21878750 21878860 -260314804 + MIR SINE MIR 114 225 -37 297 244 95 31 chr1 21879155 21879288 -260314376 + MIR SINE MIR 61 201 -61 2413 62 0 3 chr1 21879301 21879609 -260314055 + AluY SINE Alu 1 307 -4 180 176 0 0 chr1 21879823 21879857 -260313807 + GA-rich Low_complexity Low_complexity 2 35 0 629 276 184 29 chr1 21880150 21880703 -260312961 + L2 LINE L2 2632 3272 0 441 302 189 6 chr1 21881321 21881490 -260312174 + MIR SINE MIR 7 206 -56 413 278 111 7 chr1 21881833 21881977 -260311687 - MIR SINE MIR -32 230 72 889 115 0 0 chr1 21882511 21882641 -260311023 - AluSg/x SINE Alu 0 309 180 2793 127 28 12 chr1 21882830 21883255 -260310409 - MSTB1 LTR MaLR 0 432 1 345 154 0 0 chr1 21883634 21883686 -260309978 - L2 LINE L2 0 3313 3262 397 336 142 10 chr1 21883687 21884192 -260309472 - L2 LINE L2 -249 3064 2497 195 242 0 0 chr1 21884590 21884641 -260309023 - MIR SINE MIR -87 121 70 218 365 42 10 chr1 21884817 21884913 -260308751 - L2 LINE L2 -32 3240 3142 391 267 48 0 chr1 21885361 21885466 -260308198 - L2 LINE L2 -9 3304 3195 544 319 169 44 chr1 21885479 21886444 -260307220 + L2 LINE L2 2190 3308 -5 247 316 89 0 chr1 21886467 21886546 -260307118 + MIR SINE MIR 161 246 -16 360 258 47 39 chr1 21887193 21887321 -260306343 + MIR SINE MIR 31 159 -103 515 343 129 13 chr1 21887381 21888046 -260305618 - L2 LINE L2 0 3313 2584 607 235 60 6 chr1 21888753 21888919 -260304745 - MER97b DNA MER1_type? -875 178 4 422 341 89 59 chr1 21889063 21889698 -260303966 - L2 LINE L2 0 3272 2619 2186 119 60 26 chr1 21889781 21890133 -260303531 + THE1B LTR MaLR 1 364 0 973 267 137 73 chr1 21890137 21890642 -260303022 - MLT1H LTR MaLR 0 549 13 192 40 0 0 chr1 21890700 21890725 -260302939 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 236 263 17 0 chr1 21891321 21891389 -260302275 + MIR SINE MIR 85 142 -66 774 226 80 10 chr1 21891453 21891652 -260302012 - MIR SINE MIR -48 214 2 1897 195 36 55 chr1 21891749 21891793 -260301871 + MLT1C LTR MaLR 1 44 -423 2846 62 23 13 chr1 21891793 21892177 -260301487 - L1PA8 LINE L1 -2 6170 5783 1897 195 36 55 chr1 21892177 21892608 -260301056 + MLT1C LTR MaLR 44 467 0 547 312 30 30 chr1 21893040 21893271 -260300393 + MIR SINE MIR 4 234 -28 314 313 111 7 chr1 21894030 21894174 -260299490 + MIR SINE MIR 34 192 -70 399 259 86 7 chr1 21894268 21894407 -260299257 + MIR SINE MIR 43 192 -70 311 127 16 0 chr1 21895418 21895481 -260298183 + (TG)n Simple_repeat Simple_repeat 2 65 0 482 119 12 0 chr1 21895581 21895665 -260297999 + (TC)n Simple_repeat Simple_repeat 1 85 0 209 258 48 0 chr1 21895669 21895731 -260297933 + CT-rich Low_complexity Low_complexity 6 70 0 184 172 35 0 chr1 21895746 21895804 -260297860 + CT-rich Low_complexity Low_complexity 1 60 0 455 232 36 0 chr1 21896300 21896468 -260297196 + CT-rich Low_complexity Low_complexity 2 175 0 1782 92 96 0 chr1 21898720 21899007 -260294657 - AluSp SINE Alu 0 312 1 1046 83 0 0 chr1 21899009 21899141 -260294523 - AluSp SINE Alu -181 132 1 220 299 52 0 chr1 21899148 21899225 -260294439 - MIR SINE MIR -102 160 80 2120 112 7 0 chr1 21900119 21900415 -260293249 - AluSq SINE Alu -15 298 1 500 258 0 16 chr1 21901242 21901370 -260292294 - L2 LINE L2 -1 3312 3187 679 235 73 17 chr1 21901598 21901777 -260291887 - MLT1I LTR MaLR -188 221 33 236 252 72 45 chr1 21902071 21902182 -260291482 + MIR SINE MIR 99 212 -50 1738 158 16 13 chr1 21902249 21902559 -260291105 - AluJo SINE Alu -1 311 1 449 285 52 12 chr1 21902788 21902960 -260290704 - MIR SINE MIR -35 227 49 467 316 52 14 chr1 21903159 21903371 -260290293 + MIR SINE MIR 5 224 -38 2021 151 0 0 chr1 21903644 21903956 -260289708 - AluSx SINE Alu 0 312 1 601 278 72 10 chr1 21904287 21904481 -260289183 + MIR SINE MIR 18 223 -39 790 297 22 16 chr1 21904746 21904996 -260288668 + MIR SINE MIR 14 262 0 279 315 75 34 chr1 21905539 21905685 -260287979 - MIR SINE MIR -3 259 108 196 146 195 0 chr1 21906686 21906727 -260286937 - L2 LINE L2 -3 3310 3262 349 250 52 0 chr1 21906808 21906904 -260286760 + L2 LINE L2 3208 3308 -5 260 318 90 26 chr1 21906992 21907181 -260286483 - L2 LINE L2 -222 3050 2850 342 206 0 0 chr1 21907775 21907843 -260285821 - MIR SINE MIR -132 130 63 193 203 81 40 chr1 21908144 21908218 -260285446 + MIR3 SINE MIR 13 89 -119 297 319 137 70 chr1 21908311 21908786 -260284878 - L2 LINE L2 -26 3246 2746 243 146 0 0 chr1 21908805 21908846 -260284818 + (TG)n Simple_repeat Simple_repeat 1 41 0 550 314 120 0 chr1 21909015 21909206 -260284458 + MIR SINE MIR 1 214 -48 912 223 40 32 chr1 21909212 21909459 -260284205 - L2 LINE L2 -1 3312 3064 691 270 81 54 chr1 21910199 21910532 -260283132 - L2 LINE L2 0 3313 2972 370 284 27 40 chr1 21910597 21910745 -260282919 - L2 LINE L2 -548 2766 2621 290 74 0 93 chr1 21910872 21910926 -260282738 - L2 LINE L2 0 3313 3265 350 209 270 0 chr1 21911734 21911849 -260281815 + MIR SINE MIR 117 262 0 261 317 100 17 chr1 21911878 21911998 -260281666 + L2 LINE L2 3142 3271 -1 2326 124 19 19 chr1 21912120 21912490 -260281174 - L1PA16 LINE L1 -1 6165 5796 566 311 90 50 chr1 21913710 21914160 -260279504 - L2 LINE L2 -339 2975 2498 441 0 0 0 chr1 21914160 21914209 -260279455 + (TG)n Simple_repeat Simple_repeat 2 50 0 566 311 90 50 chr1 21914209 21914301 -260279363 - L2 LINE L2 -816 2498 2411 227 256 115 0 chr1 21914359 21914437 -260279227 - MIR3 SINE MIR -11 197 111 297 353 35 0 chr1 21914515 21914631 -260279033 + MIR SINE MIR 29 148 -60 409 250 22 0 chr1 21915043 21915135 -260278529 + MIR SINE MIR 58 151 -57 2055 124 0 0 chr1 21915229 21915520 -260278144 - AluJb SINE Alu -16 296 6 288 53 0 0 chr1 21916243 21916281 -260277383 - MIR SINE MIR -61 147 110 378 229 229 7 chr1 21916375 21916519 -260277145 + MER5A DNA MER1_type 13 188 -1 502 278 43 19 chr1 21916562 21916724 -260276940 - MIR SINE MIR -69 193 28 282 322 23 0 chr1 21916807 21916894 -260276770 + Charlie8 DNA MER1_type 110 198 -2219 301 262 161 34 chr1 21917327 21917496 -260276168 + MIR SINE MIR 2 191 -56 208 388 9 9 chr1 21917535 21917651 -260276013 + MIR SINE MIR 1 116 -146 251 174 0 0 chr1 21917757 21917803 -260275861 - MIR SINE MIR -76 132 87 210 244 0 0 chr1 21917838 21917883 -260275781 - MIR SINE MIR -118 90 46 298 327 108 27 chr1 21918360 21918583 -260275081 + MIR SINE MIR 2 242 -20 591 329 70 37 chr1 21919118 21919492 -260274172 - L2 LINE L2 -5 3308 2923 503 284 89 26 chr1 21919749 21920056 -260273608 - L2 LINE L2 -184 3129 2791 324 324 63 0 chr1 21920369 21920480 -260273184 + L1MC/D LINE L1 5470 5587 -2198 271 296 189 6 chr1 21920908 21921067 -260272597 - MIR SINE MIR -19 243 56 351 293 18 89 chr1 21921103 21921169 -260272495 + MIR SINE MIR 34 103 -159 1950 84 4 0 chr1 21921169 21921432 -260272232 + AluY SINE Alu 42 305 -6 351 293 18 89 chr1 21921432 21921590 -260272074 + MIR SINE MIR 103 242 -20 627 225 106 12 chr1 21922227 21922387 -260271277 - MER5B DNA MER1_type -3 175 1 324 228 168 0 chr1 21922624 21922725 -260270939 - MIR3 SINE MIR -21 187 70 383 235 17 42 chr1 21923328 21923447 -260270217 - MIR3 SINE MIR -7 201 86 194 217 33 50 chr1 21923824 21923884 -260269780 - MIR SINE MIR -83 125 67 897 325 157 10 chr1 21925490 21925557 -260268107 - L2 LINE L2 -87 3226 3170 2212 102 0 0 chr1 21925557 21925861 -260267803 + AluSc SINE Alu 1 304 -5 897 325 157 10 chr1 21925861 21926515 -260267149 - L2 LINE L2 -143 3170 2396 238 213 27 27 chr1 21926525 21926600 -260267064 + (CAGAGA)n Simple_repeat Simple_repeat 4 78 0 283 265 157 0 chr1 21926964 21927066 -260266598 - MIR SINE MIR -26 236 119 575 253 59 12 chr1 21927259 21927429 -260266235 - MIR SINE MIR -62 200 23 457 298 64 11 chr1 21928089 21928298 -260265366 - MIR SINE MIR -6 256 38 306 341 59 15 chr1 21928389 21928524 -260265140 - L2 LINE L2 -20 3252 3112 399 293 82 30 chr1 21929268 21929444 -260264220 - MIR3 SINE MIR -7 201 17 298 330 10 10 chr1 21929537 21929640 -260264024 + MIR SINE MIR 47 149 -59 375 330 21 57 chr1 21929647 21929841 -260263823 - MER117 DNA MER1_type 0 197 11 207 0 0 0 chr1 21930714 21930737 -260262927 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1816 100 58 0 chr1 21930742 21931001 -260262663 - AluSg SINE Alu -36 274 1 309 278 9 52 chr1 21931020 21931135 -260262529 + MIR SINE MIR 65 174 -88 279 122 0 0 chr1 21931249 21931298 -260262366 + (CAT)n Simple_repeat Simple_repeat 2 50 0 711 299 19 5 chr1 21931403 21931614 -260262050 + MIR SINE MIR 25 238 -24 321 89 0 0 chr1 21931905 21931950 -260261714 + (TGG)n Simple_repeat Simple_repeat 1 45 0 249 159 0 0 chr1 21932777 21932821 -260260843 + GA-rich Low_complexity Low_complexity 3 46 0 678 227 0 8 chr1 21932889 21933021 -260260643 + FLAM_A SINE Alu 11 141 -1 750 310 122 5 chr1 21933127 21933504 -260260160 - L1ME4a LINE L1 -116 6005 5585 1906 110 0 38 chr1 21933540 21933831 -260259833 - AluSx SINE Alu -1 311 32 317 329 7 40 chr1 21933957 21934106 -260259558 - MIR3 SINE MIR -58 150 7 199 283 0 0 chr1 21935294 21935340 -260258324 - MIR SINE MIR -118 90 45 751 312 95 25 chr1 21935684 21936119 -260257545 - LTR16B LTR ERVL -24 440 1 320 290 63 14 chr1 21936194 21936366 -260257298 - MIR3 SINE MIR -12 250 70 * 407 223 24 114 chr1 21936354 21936456 -260257208 + MIR3 SINE MIR 55 139 -69 1975 120 0 0 chr1 21936456 21936802 -260256862 + AluSx SINE Alu 7 352 0 407 223 24 114 chr1 21936802 21936864 -260256800 + MIR3 SINE MIR 139 205 -3 403 306 10 67 chr1 21937412 21937480 -260256184 + MER5A DNA MER1_type 8 78 -111 1838 110 0 11 chr1 21937480 21937744 -260255920 + AluSx SINE Alu 37 297 -15 403 306 10 67 chr1 21937744 21937868 -260255796 + MER5A DNA MER1_type 78 189 0 679 237 73 17 chr1 21938261 21938438 -260255226 - Charlie8 DNA MER1_type -2132 285 99 316 336 58 54 chr1 21938677 21938781 -260254883 + L1M4 LINE L1 5497 5599 -585 2170 105 0 0 chr1 21938781 21939076 -260254588 + AluSx SINE Alu 1 295 -17 316 336 58 54 chr1 21939076 21939230 -260254434 + L1M4 LINE L1 5599 5756 -428 1610 151 13 30 chr1 21939278 21939583 -260254081 + AluJo SINE Alu 1 300 -12 2535 143 37 7 chr1 21939717 21940149 -260253515 - Tigger2 DNA MER2_type -1 2717 2273 426 159 0 0 chr1 21940138 21940207 -260253457 - Tigger2 DNA MER2_type -2649 69 1 * 520 279 122 20 chr1 21940772 21940969 -260252695 - MIR SINE MIR -17 245 29 237 359 99 39 chr1 21940986 21941298 -260252366 - L2 LINE L2 -5 3267 2937 2057 138 0 0 chr1 21941376 21941680 -260251984 - AluSx SINE Alu -8 304 1 334 240 18 30 chr1 21942332 21942474 -260251190 - MIR SINE MIR -56 206 70 1872 136 0 18 chr1 21942594 21942770 -260250894 - AluSx SINE Alu 0 308 138 2208 122 0 0 chr1 21942770 21943082 -260250582 - AluSq SINE Alu -1 312 1 1872 136 0 18 chr1 21943082 21943217 -260250447 - AluSx SINE Alu -170 138 2 1017 171 81 38 chr1 21943256 21943466 -260250198 - MER20 DNA MER1_type 0 219 1 1982 137 0 13 chr1 21943512 21943827 -260249837 + AluJb SINE Alu 1 311 -1 290 245 42 33 chr1 21944047 21944143 -260249521 + MIR3 SINE MIR 61 158 -50 209 295 16 0 chr1 21944160 21944221 -260249443 - L2 LINE L2 -3 3310 3249 189 0 0 0 chr1 21944452 21944473 -260249191 + (CA)n Simple_repeat Simple_repeat 1 21 0 351 277 10 0 chr1 21945209 21945310 -260248354 - L1ME1 LINE L1 -19 6147 6046 908 301 59 48 chr1 21945314 21945925 -260247739 - L1MC4a LINE L1 -1918 5890 5273 494 329 98 51 chr1 21945995 21946351 -260247313 + L1M4 LINE L1 4773 5145 -1001 423 119 0 0 chr1 21946609 21946676 -260246988 + (TCC)n Simple_repeat Simple_repeat 1 67 0 249 246 6 77 chr1 21947958 21948141 -260245523 + C-rich Low_complexity Low_complexity 3 172 0 397 293 40 83 chr1 21948600 21948900 -260244764 - L2 LINE L2 0 3313 3027 314 350 21 14 chr1 21949174 21949317 -260244347 + MIR SINE MIR 20 163 -99 279 273 104 59 chr1 21950114 21950334 -260243330 - HAL1b LINE L1 -10 1338 1109 660 285 22 26 chr1 21950420 21950648 -260243016 - MIR SINE MIR -35 227 1 508 226 202 45 chr1 21950677 21950969 -260242695 - L1ME LINE L1 -363 5758 5421 537 269 7 0 chr1 21951449 21951590 -260242074 + MER103 DNA DNA 13 154 -12 1693 165 6 69 chr1 21951682 21952015 -260241649 - AluJo SINE Alu 0 312 1 372 318 103 11 chr1 21952224 21952386 -260241278 - MIR SINE MIR -62 146 3 288 0 0 0 chr1 21953624 21953656 -260240008 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1885 126 7 0 chr1 21953656 21953934 -260239730 - AluSx SINE Alu -32 280 1 198 0 0 0 chr1 21953984 21954006 -260239658 + (T)n Simple_repeat Simple_repeat 1 22 0 422 231 113 86 chr1 21954031 21954217 -260239447 - MIR SINE MIR -26 236 46 476 228 47 2 chr1 21954581 21954733 -260238931 - MIR SINE MIR -62 146 35 254 315 56 0 chr1 21954997 21955105 -260238559 + MIR3 SINE MIR 88 201 -7 1630 155 56 11 chr1 21955491 21955624 -260238040 + AluJo SINE Alu 3 128 -184 2227 106 0 0 chr1 21955624 21955926 -260237738 + AluSg SINE Alu 1 302 -8 1630 155 56 11 chr1 21955926 21956076 -260237588 + AluJo SINE Alu 128 299 -13 370 324 21 42 chr1 21956102 21956244 -260237420 + MIR3 SINE MIR 54 192 -16 575 276 55 96 chr1 21957091 21957384 -260236280 - L2 LINE L2 -5 3267 2987 619 223 43 7 chr1 21958629 21958768 -260234896 + MIR3 SINE MIR 19 162 -46 208 293 27 27 chr1 21960644 21960719 -260232945 + MIR3 SINE MIR 82 156 -52 474 349 0 7 chr1 21961411 21961557 -260232107 + MIR3 SINE MIR 16 160 -48 310 294 59 10 chr1 21961805 21961907 -260231757 - L2 LINE L2 -7 3306 3200 1166 272 57 42 chr1 21963882 21963903 -260229761 - LTR16C LTR ERVL 0 491 472 540 234 0 9 chr1 21963903 21964014 -260229650 + MER81 DNA DNA 1 110 -4 1166 272 57 42 chr1 21964014 21964393 -260229271 - LTR16C LTR ERVL -19 472 85 262 298 32 0 chr1 21964684 21964778 -260228886 - LTR16C LTR ERVL -390 101 5 408 20 0 0 chr1 21965348 21965397 -260228267 + (TG)n Simple_repeat Simple_repeat 2 50 0 380 296 76 111 chr1 21966704 21967048 -260226616 + L2 LINE L2 2932 3263 -9 36 53 0 0 chr1 21967229 21967286 -260226378 + AT_rich Low_complexity Low_complexity 1 57 0 191 111 0 22 chr1 21967286 21967331 -260226333 + (TAAAA)n Simple_repeat Simple_repeat 4 47 0 241 328 8 25 chr1 21967331 21967450 -260226214 - MIR SINE MIR -128 134 18 313 282 8 57 chr1 21967899 21968023 -260225641 - MIR3 SINE MIR -9 199 82 2503 126 67 50 chr1 21968084 21968270 -260225394 + MSTC LTR MaLR 1 182 -246 2116 120 0 3 chr1 21968270 21968571 -260225093 + AluSq SINE Alu 1 300 -13 2503 126 67 50 chr1 21968571 21968805 -260224859 + MSTC LTR MaLR 182 428 0 570 208 0 0 chr1 21969142 21969248 -260224416 + MIR3 SINE MIR 82 187 -21 283 167 152 0 chr1 21969664 21969730 -260223934 + MIR SINE MIR 66 141 -121 312 271 7 57 chr1 21971294 21971434 -260222230 + GA-rich Low_complexity Low_complexity 6 138 0 1003 307 120 7 chr1 21971458 21972074 -260221590 + L2 LINE L2 1980 2665 -649 1248 132 0 0 chr1 21972108 21972290 -260221374 - AluY SINE Alu -129 182 1 714 65 0 0 chr1 21972291 21972383 -260221281 + AluSg/x SINE Alu 185 276 -36 899 63 42 0 chr1 21972390 21972532 -260221132 + (GAAA)n Simple_repeat Simple_repeat 2 149 0 1168 262 65 32 chr1 21972535 21973094 -260220570 + L2 LINE L2 2722 3299 -14 244 300 25 0 chr1 21973094 21973174 -260220490 + GA-rich Low_complexity Low_complexity 3 84 0 244 258 16 0 chr1 21973695 21973757 -260219907 - L3 LINE CR1 -116 1461 1399 367 331 109 11 chr1 21973913 21974097 -260219567 - MIR SINE MIR -60 202 1 298 311 22 11 chr1 21974245 21974335 -260219329 + MIR SINE MIR 59 149 -59 626 269 19 60 chr1 21974756 21974972 -260218692 - MIR SINE MIR -53 209 3 185 339 0 46 chr1 21975671 21975780 -260217884 - MER5B DNA MER1_type -35 143 40 180 176 0 0 chr1 21975969 21976003 -260217661 + T-rich Low_complexity Low_complexity 1 34 0 289 278 19 28 chr1 21976196 21976304 -260217360 + MIR3 SINE MIR 15 121 -87 474 229 70 25 chr1 21976523 21976680 -260216984 + MER103 DNA DNA 1 164 -2 964 232 30 4 chr1 21976690 21976927 -260216737 - MIR SINE MIR -3 259 17 422 300 64 7 chr1 21977482 21977622 -260216042 - L2 LINE L2 -1 3312 3165 631 283 34 24 chr1 21977655 21977860 -260215804 - MIR SINE MIR -8 254 48 265 294 29 114 chr1 21977899 21978144 -260215520 - L2 LINE L2 -192 3080 2857 600 273 49 41 chr1 21978328 21978577 -260215087 + MIR SINE MIR 7 255 -7 449 310 183 49 chr1 21978948 21979797 -260213867 + L2 LINE L2 2308 3271 -1 191 261 43 43 chr1 21979891 21979960 -260213704 - MIR SINE MIR -102 106 38 189 347 28 0 chr1 21980568 21980640 -260213024 - MER5A DNA MER1_type -8 181 108 225 174 43 0 chr1 21980920 21980966 -260212698 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 968 234 181 13 chr1 21982259 21982563 -260211101 - MLT1K LTR MaLR -24 564 210 657 279 93 25 chr1 21982601 21982805 -260210859 - MIR SINE MIR -31 231 14 449 246 73 0 chr1 21982792 21982902 -260210762 - MER5A DNA MER1_type -4 185 68 * 260 288 53 45 chr1 21983000 21983132 -260210532 - MLT1K LTR MaLR -410 178 46 760 232 12 0 chr1 21983137 21983305 -260210359 + MIR SINE MIR 90 259 -3 400 319 125 17 chr1 21983627 21983859 -260209805 + MIR SINE MIR 2 258 -4 418 295 64 56 chr1 21984436 21984594 -260209070 + MIR SINE MIR 8 170 -92 2282 110 0 0 chr1 21984594 21984902 -260208762 + AluSc SINE Alu 1 308 -1 418 295 64 56 chr1 21984902 21984977 -260208687 + MIR SINE MIR 170 243 -19 520 266 49 0 chr1 21985162 21985305 -260208359 + L2 LINE L2 3154 3303 -10 271 189 19 0 chr1 21985316 21985369 -260208295 - L2 LINE L2 0 3272 3219 242 140 0 20 chr1 21986000 21986050 -260207614 + (TGGA)n Simple_repeat Simple_repeat 4 52 0 296 216 0 23 chr1 21986140 21986228 -260207436 + (TGGA)n Simple_repeat Simple_repeat 1 86 0 186 118 0 0 chr1 21986428 21986462 -260207202 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 313 209 104 0 chr1 21986462 21986529 -260207135 - L2 LINE L2 -13 3259 3186 8664 184 65 99 chr1 21987107 21989097 -260204567 + L1MD2 LINE L1 34 2161 -4516 1382 141 0 42 chr1 21989097 21989310 -260204354 - AluJb SINE Alu -27 285 82 8664 184 65 99 chr1 21989310 21989917 -260203747 + L1MD2 LINE L1 2161 2787 -3890 1675 196 15 6 chr1 21989917 21990244 -260203420 + L1MD2 LINE L1 6094 6423 -330 357 274 62 0 chr1 21990735 21990848 -260202816 + L2 LINE L2 3152 3271 -1 2154 103 0 82 chr1 21990905 21991234 -260202430 + AluSx SINE Alu 1 302 -10 476 225 49 35 chr1 21991699 21991841 -260201823 + MIR SINE MIR 42 185 -77 258 206 0 0 chr1 21992013 21992081 -260201583 + (ATG)n Simple_repeat Simple_repeat 2 69 0 368 289 122 32 chr1 21992102 21992258 -260201406 - MIR SINE MIR -14 248 79 334 300 130 81 chr1 21992407 21992754 -260200910 - L2 LINE L2 0 3272 2909 451 273 106 32 chr1 21993172 21993393 -260200271 + MIR SINE MIR 15 261 -1 198 259 0 35 chr1 21993374 21993432 -260200232 - MIR SINE MIR -99 163 108 * 601 241 55 0 chr1 21993894 21994039 -260199625 + MIR3 SINE MIR 34 186 -22 972 262 9 9 chr1 21994647 21994872 -260198792 + MIR SINE MIR 34 258 -4 448 257 143 6 chr1 21995162 21995337 -260198327 - MIR3 SINE MIR -7 201 3 413 274 26 9 chr1 21995929 21996042 -260197622 + MIR SINE MIR 77 191 -71 291 273 45 34 chr1 21996087 21996175 -260197489 - MIR SINE MIR -56 152 64 820 251 30 0 chr1 21996200 21996403 -260197261 - MIR SINE MIR -40 222 14 372 272 34 41 chr1 21996541 21996688 -260196976 + MIR SINE MIR 67 212 -50 437 285 29 22 chr1 21996997 21997134 -260196530 - MIR SINE MIR -72 190 53 225 248 88 48 chr1 21997188 21997313 -260196351 - MIR SINE MIR -113 149 20 204 224 112 41 chr1 21997392 21997490 -260196174 - MIR SINE MIR -58 150 46 * 217 245 25 110 chr1 21997418 21997581 -260196083 + MIR3 SINE MIR 36 184 -24 379 344 8 0 chr1 21997600 21997725 -260195939 - MER5A DNA MER1_type 0 189 64 468 276 82 0 chr1 21998017 21998151 -260195513 - L2 LINE L2 0 3313 3169 180 121 30 0 chr1 21998244 21998277 -260195387 - MIR SINE MIR -117 145 112 260 287 44 59 chr1 21998524 21998660 -260195004 - L2 LINE L2 -2 3270 3137 764 242 16 6 chr1 21998721 21998903 -260194761 - MIR SINE MIR -38 224 41 230 316 32 42 chr1 22000414 22000509 -260193155 - MIR SINE MIR -135 127 34 227 178 22 0 chr1 22000543 22000555 -260193109 + MER34C LTR ERV1 25 37 -548 387 103 29 0 chr1 22000555 22000623 -260193041 + MER34B LTR ERV1 1 70 -495 922 136 0 0 chr1 22000623 22000755 -260192909 + AluJ SINE Alu 1 132 -170 21 0 0 0 chr1 22000755 22000776 -260192888 + AT_rich Low_complexity Low_complexity 1 21 0 6482 91 12 8 chr1 22000786 22002273 -260191391 + L1PA11 LINE L1 4680 6171 -3 917 183 77 0 chr1 22002282 22002451 -260191213 + AluJ SINE Alu 131 312 0 2610 150 31 0 chr1 22002472 22002926 -260190738 + MER34B LTR ERV1 77 544 -21 247 299 80 45 chr1 22003062 22003326 -260190338 - L2 LINE L2 -189 3083 2811 276 111 0 0 chr1 22003430 22003475 -260190189 + (TGGA)n Simple_repeat Simple_repeat 1 45 0 252 188 0 31 chr1 22003483 22003547 -260190117 + (TGAA)n Simple_repeat Simple_repeat 4 65 0 347 237 161 0 chr1 22003590 22003683 -260189981 + MIR SINE MIR 33 140 -68 218 205 0 0 chr1 22005832 22005871 -260187793 - L3 LINE CR1 -15 1562 1524 975 118 0 20 chr1 22005881 22006033 -260187631 - L1PA16 LINE L1 0 6166 6018 192 97 0 0 chr1 22006193 22006224 -260187440 + (TTCA)n Simple_repeat Simple_repeat 4 34 0 660 302 79 50 chr1 22006228 22006645 -260187019 - L2 LINE L2 -18 3295 2867 371 307 44 0 chr1 22006746 22006883 -260186781 - MIR3 SINE MIR -48 160 18 466 272 204 5 chr1 22007526 22007732 -260185932 + MIR SINE MIR 10 256 -6 297 75 0 0 chr1 22007938 22007978 -260185686 + (TG)n Simple_repeat Simple_repeat 1 40 0 355 353 58 51 chr1 22008103 22008398 -260185266 + L3 LINE CR1 332 628 -949 1155 268 63 40 chr1 22008454 22008850 -260184814 - L2 LINE L2 -3 3310 2906 318 156 0 52 chr1 22009010 22009087 -260184577 - L2 LINE L2 -386 2886 2814 185 268 42 42 chr1 22009087 22009158 -260184506 - L2 LINE L2 -694 2620 2550 * 739 276 131 0 chr1 22009135 22009356 -260184308 + MIR SINE MIR 5 254 -8 2577 171 34 3 chr1 22009361 22009859 -260183805 + L1MD3 LINE L1 6129 6254 -79 2077 128 24 7 chr1 22010004 22010300 -260183364 - AluSx SINE Alu -10 302 2 183 412 35 0 chr1 22010306 22010391 -260183273 + L3 LINE CR1 1393 1480 -97 494 268 124 0 chr1 22010670 22010823 -260182841 + MIR SINE MIR 10 181 -81 446 321 71 31 chr1 22011611 22011807 -260181857 - MIR SINE MIR -14 248 45 272 271 94 0 chr1 22011859 22011944 -260181720 - L2 LINE L2 -43 3229 3137 274 326 0 0 chr1 22012243 22012329 -260181335 + MIR SINE MIR 7 92 -170 1370 250 234 32 chr1 22012463 22013206 -260180458 - L2 LINE L2 0 3313 2383 4504 235 138 42 chr1 22013208 22015215 -260178449 + HAL1 LINE L1 1 2285 -222 4174 233 43 23 chr1 22015215 22017087 -260176577 + L1MB7 LINE L1 4 2248 -4711 * 6779 190 51 10 chr1 22017083 22017869 -260175795 + L1MB7 LINE L1 4455 5208 -1787 1923 148 3 10 chr1 22017869 22018160 -260175504 + AluJb SINE Alu 1 289 -23 6779 190 51 10 chr1 22018160 22019801 -260173863 + L1MB7 LINE L1 5208 6983 -12 521 233 89 20 chr1 22019830 22020032 -260173632 + HAL1 LINE L1 2292 2507 0 618 238 124 19 chr1 22020379 22020589 -260173075 - MIR SINE MIR -19 243 12 357 277 40 10 chr1 22020973 22021074 -260172590 - MIR3 SINE MIR -27 181 78 2354 86 0 3 chr1 22021221 22021511 -260172153 + AluSx SINE Alu 11 299 -13 1184 101 6 6 chr1 22021511 22021670 -260171994 + AluSg/x SINE Alu 132 290 -20 203 133 0 0 chr1 22021731 22021761 -260171903 + (TCTCCC)n Simple_repeat Simple_repeat 2 31 0 542 246 15 30 chr1 22021828 22021962 -260171702 + MIR SINE MIR 28 159 -103 652 158 167 0 chr1 22021968 22022082 -260171582 + FLAM_C SINE Alu 1 133 0 21 0 0 0 chr1 22022082 22022103 -260171561 + AT_rich Low_complexity Low_complexity 1 21 0 214 143 0 0 chr1 22022530 22022565 -260171099 - MIR SINE MIR -59 149 115 1841 185 3 0 chr1 22023207 22023499 -260170165 + AluJb SINE Alu 1 293 -19 432 310 25 6 chr1 22023513 22023671 -260169993 + L2 LINE L2 3151 3311 -2 441 269 110 0 chr1 22023721 22023866 -260169798 - MIR SINE MIR -55 207 47 326 291 0 47 chr1 22024150 22024277 -260169387 + GA-rich Low_complexity Low_complexity 2 122 0 469 189 180 0 chr1 22025120 22025242 -260168422 + MER45A DNA AcHobo 34 177 -1 209 314 129 0 chr1 22025323 22025393 -260168271 - MIR SINE MIR -21 241 163 372 227 9 82 chr1 22025459 22025503 -260168161 - MER5A DNA MER1_type -84 105 59 2097 128 16 0 chr1 22025503 22025808 -260167856 - AluSx SINE Alu -2 310 1 372 227 9 82 chr1 22025808 22025873 -260167791 - MER5A DNA MER1_type -130 59 4 875 219 77 9 chr1 22025995 22026228 -260167436 + LTR16A1 LTR ERVL 209 457 0 347 259 161 0 chr1 22026228 22026340 -260167324 - MIR SINE MIR -99 163 34 1254 109 36 0 chr1 22026677 22026869 -260166795 + MSTA LTR MaLR 1 199 -229 2311 114 0 0 chr1 22026873 22027172 -260166492 + AluSp SINE Alu 1 299 -14 718 129 17 0 chr1 22027285 22027401 -260166263 + AluSg/x SINE Alu 179 296 -16 387 307 12 91 chr1 22027402 22027643 -260166021 - L2 LINE L2 -621 2693 2472 566 234 99 14 chr1 22028005 22028146 -260165518 + MIR3 SINE MIR 16 168 -40 938 280 172 6 chr1 22028146 22028507 -260165157 + MLT1K LTR MaLR 161 581 -7 255 192 75 92 chr1 22028573 22028693 -260164971 + L2 LINE L2 2942 3059 -213 528 216 85 20 chr1 22028755 22028908 -260164756 - MER103 DNA DNA -2 164 2 209 343 0 0 chr1 22029039 22029106 -260164558 - L2 LINE L2 -23 3290 3224 319 327 63 0 chr1 22029150 22029269 -260164395 + MIR3 SINE MIR 43 169 -39 385 291 9 0 chr1 22029269 22029379 -260164285 + MLT1K LTR MaLR 161 271 -317 2306 129 0 0 chr1 22029458 22029768 -260163896 + AluSx SINE Alu 1 310 -2 563 309 32 18 chr1 22029972 22030189 -260163475 + MIR SINE MIR 33 256 -6 1590 279 49 27 chr1 22030512 22031067 -260162597 + MLT1E LTR MaLR 27 593 0 324 240 80 60 chr1 22031067 22031179 -260162485 - MLT1K LTR MaLR -49 539 425 273 286 0 0 chr1 22031179 22031263 -260162401 - LTR16C LTR ERVL 0 491 408 326 266 43 22 chr1 22031324 22031463 -260162201 - LTR16C LTR ERVL -251 240 99 640 271 45 14 chr1 22031550 22031771 -260161893 - MLT1K LTR MaLR -163 425 198 536 215 31 63 chr1 22031932 22032009 -260161655 - MER112 DNA MER1_type -36 224 146 915 127 9 167 chr1 22032009 22032230 -260161434 - MER5A DNA MER1_type 0 189 4 536 215 31 63 chr1 22032230 22032343 -260161321 - MER112 DNA MER1_type -114 146 40 2369 116 0 0 chr1 22032343 22032653 -260161011 - AluSx SINE Alu -2 310 1 334 265 120 16 chr1 22032685 22032803 -260160861 - MIR SINE MIR -92 116 2 636 232 119 8 chr1 22032882 22033203 -260160461 - MLT1J LTR MaLR -28 483 84 452 310 120 0 chr1 22034356 22034540 -260159124 - MIR SINE MIR -6 256 51 253 181 0 28 chr1 22036372 22036444 -260157220 + (CA)n Simple_repeat Simple_repeat 1 70 0 201 317 67 10 chr1 22036827 22036931 -260156733 + MIR SINE MIR 22 131 -77 1833 133 31 20 chr1 22037022 22037316 -260156348 + AluSx SINE Alu 1 297 -15 416 263 166 12 chr1 22037559 22037727 -260155937 + MIR3 SINE MIR 7 196 -12 199 352 105 0 chr1 22037867 22037972 -260155692 - MIR SINE MIR -98 164 49 647 258 56 14 chr1 22037989 22038202 -260155462 - MIR SINE MIR -38 224 3 427 303 26 79 chr1 22038318 22038661 -260155003 - MLT1H LTR MaLR -2 547 223 198 136 0 0 chr1 22038661 22038705 -260154959 + (GA)n Simple_repeat Simple_repeat 2 45 0 1042 204 54 5 chr1 22038705 22038926 -260154738 - MLT1H LTR MaLR -317 232 1 339 250 0 86 chr1 22038976 22039092 -260154572 - MIR3 SINE MIR -8 200 95 703 272 40 18 chr1 22039395 22039619 -260154045 - MIR SINE MIR 0 262 34 1847 117 0 41 chr1 22039781 22040072 -260153592 + AluSx SINE Alu 19 297 -15 988 266 38 13 chr1 22040085 22040322 -260153342 + MIR SINE MIR 20 262 0 810 262 128 52 chr1 22041440 22041863 -260151801 + L2 LINE L2 2844 3298 -15 267 227 80 34 chr1 22041886 22041974 -260151690 - MIR SINE MIR -73 189 98 2084 168 139 34 chr1 22041982 22042507 -260151157 + L1ME1 LINE L1 5484 6063 -103 326 250 11 43 chr1 22042513 22042605 -260151059 + MER21B LTR ERV1 1 89 -774 2400 240 18 75 chr1 22042679 22043053 -260150611 + MER21B LTR ERV1 133 448 -415 1879 161 20 0 chr1 22043053 22043351 -260150313 + AluSx SINE Alu 6 309 -3 2400 240 18 75 chr1 22043351 22043697 -260149967 + MER21B LTR ERV1 448 812 -51 473 204 0 35 chr1 22043735 22043848 -260149816 + L1ME1 LINE L1 6054 6162 -4 198 213 164 0 chr1 22043867 22043928 -260149736 + MIR SINE MIR 42 112 -96 460 267 25 17 chr1 22044130 22044250 -260149414 - MER115 DNA AcHobo -382 311 191 * 617 264 0 0 chr1 22044240 22044380 -260149284 + MER21B LTR ERV1 239 378 -485 539 321 77 0 chr1 22044406 22044602 -260149062 - MER115 DNA AcHobo -475 218 8 577 283 49 26 chr1 22044831 22045066 -260148598 - MIR SINE MIR -9 253 16 845 218 73 0 chr1 22045178 22045357 -260148307 - AluJo SINE Alu -1 311 120 2246 101 7 0 chr1 22045596 22045902 -260147762 + AluSx SINE Alu 1 308 -4 342 224 0 0 chr1 22045978 22046094 -260147570 + (TG)n Simple_repeat Simple_repeat 2 117 0 603 202 0 8 chr1 22046105 22046757 -260146907 + (TG)n Simple_repeat Simple_repeat 1 646 0 677 268 11 0 chr1 22046936 22047119 -260146545 - MIR SINE MIR -2 260 76 2378 80 0 0 chr1 22047433 22047735 -260145929 + AluSx SINE Alu 1 302 -10 254 182 234 13 chr1 22047858 22047935 -260145729 - MIR3 SINE MIR -25 183 90 351 319 0 18 chr1 22048588 22048701 -260144963 - L2 LINE L2 0 3313 3203 740 261 58 19 chr1 22048968 22049175 -260144489 - MIR SINE MIR -35 227 13 471 263 17 0 chr1 22049446 22049564 -260144100 + L2 LINE L2 3188 3307 -6 325 308 17 25 chr1 22049629 22049749 -260143915 - MER5A DNA MER1_type -43 146 28 2187 137 33 38 chr1 22050014 22050380 -260143284 + THE1B LTR MaLR 1 364 0 318 252 35 21 chr1 22050483 22050626 -260143038 + GA-rich Low_complexity Low_complexity 2 146 0 1783 170 0 7 chr1 22050818 22051118 -260142546 - AluJo SINE Alu -14 298 1 208 244 0 0 chr1 22051348 22051393 -260142271 + MIR3 SINE MIR 120 164 -44 537 298 170 10 chr1 22051429 22051877 -260141787 + L2 LINE L2 2775 3313 0 192 248 324 0 chr1 22051954 22052059 -260141605 - MIR SINE MIR -96 166 28 545 234 16 16 chr1 22052604 22052732 -260140932 + MIR SINE MIR 20 147 -115 242 250 115 47 chr1 22052841 22052989 -260140675 + L2 LINE L2 2934 3091 -181 381 284 14 24 chr1 22053105 22053272 -260140392 + GA-rich Low_complexity Low_complexity 2 289 0 485 300 64 36 chr1 22054038 22054258 -260139406 - MIR SINE MIR -1 261 36 669 293 33 22 chr1 22054442 22054715 -260138949 - L1ME4a LINE L1 -232 5889 5614 212 283 0 0 chr1 22055046 22055099 -260138565 - MIR SINE MIR -119 143 91 438 231 0 0 chr1 22055365 22055508 -260138156 + (TG)n Simple_repeat Simple_repeat 2 144 0 313 350 67 25 chr1 22055539 22055779 -260137885 + MIR SINE MIR 12 261 -1 249 258 0 45 chr1 22055819 22055885 -260137779 - L2 LINE L2 0 3313 3251 238 351 48 11 chr1 22055976 22056164 -260137500 + MIR SINE MIR 68 262 0 2118 119 0 0 chr1 22056248 22056551 -260137113 + AluSx SINE Alu 1 303 -9 530 233 30 8 chr1 22057004 22057137 -260136527 + MIR SINE MIR 127 262 0 363 320 61 91 chr1 22057267 22057469 -260136195 - L2 LINE L2 -69 3203 3018 2241 98 3 9 chr1 22057469 22057784 -260135880 - AluSq SINE Alu 0 313 1 363 320 61 91 chr1 22057784 22057990 -260135674 - L2 LINE L2 -254 3018 2807 2197 110 7 0 chr1 22058015 22058324 -260135340 - AluY SINE Alu 0 311 1 1278 193 8 4 chr1 22058338 22058603 -260135061 + L1MD3 LINE L1 7730 7995 0 347 336 187 7 chr1 22058609 22058898 -260134766 - L2 LINE L2 -541 2773 2433 375 290 119 86 chr1 22058906 22059083 -260134581 - MLT1K LTR MaLR -9 579 409 1993 140 7 3 chr1 22059083 22059391 -260134273 - AluSx SINE Alu -3 309 1 375 290 119 86 chr1 22059391 22059758 -260133906 - MLT1K LTR MaLR -179 409 17 686 268 29 61 chr1 22060395 22060641 -260133023 + MIR SINE MIR 20 257 -5 239 191 16 0 chr1 22060689 22060752 -260132912 + (TGGA)n Simple_repeat Simple_repeat 4 67 0 528 194 0 0 chr1 22060812 22060946 -260132718 + (TGGA)n Simple_repeat Simple_repeat 4 137 0 2134 171 30 30 chr1 22060958 22061105 -260132559 + MSTD LTR MaLR 4 150 -246 2322 77 0 0 chr1 22061105 22061402 -260132262 - AluY SINE Alu -14 297 1 2134 171 30 30 chr1 22061402 22061647 -260132017 + MSTD LTR MaLR 149 396 0 302 160 0 27 chr1 22061673 22061748 -260131916 + (TGGA)n Simple_repeat Simple_repeat 1 73 0 234 383 16 16 chr1 22061748 22061876 -260131788 - L2 LINE L2 -66 3206 3079 362 355 50 0 chr1 22062473 22062614 -260131050 + MIR3 SINE MIR 45 192 -16 320 321 45 8 chr1 22062677 22062811 -260130853 + MIR SINE MIR 82 220 -42 245 244 139 0 chr1 22062953 22063039 -260130625 - MIR SINE MIR -79 129 32 240 35 0 0 chr1 22063320 22063349 -260130315 + (CTG)n Simple_repeat Simple_repeat 2 30 0 605 323 15 0 chr1 22063484 22063682 -260129982 + MIR SINE MIR 11 211 -51 478 301 118 6 chr1 22063693 22064050 -260129614 - LTR16A LTR ERVL -6 444 3 705 188 0 0 chr1 22064084 22064233 -260129431 + (CAT)n Simple_repeat Simple_repeat 2 150 0 752 193 17 0 chr1 22064257 22064433 -260129231 + (CACCAT)n Simple_repeat Simple_repeat 1 179 0 549 241 0 0 chr1 22065144 22065314 -260128350 + (CACCAT)n Simple_repeat Simple_repeat 4 173 0 508 303 21 43 chr1 22065343 22065531 -260128133 - MIR SINE MIR -65 197 14 512 330 157 16 chr1 22065946 22066322 -260127342 + L2 LINE L2 2844 3272 0 203 181 12 133 chr1 22066602 22066685 -260126979 - MIR SINE MIR -72 136 64 202 316 0 0 chr1 22066874 22066931 -260126733 + C-rich Low_complexity Low_complexity 2 58 0 578 330 68 30 chr1 22067498 22067995 -260125669 + L2 LINE L2 2462 2977 -337 1210 247 148 34 chr1 22068075 22068601 -260125063 + MLT2F LTR ERVL 22 607 -56 193 337 24 0 chr1 22068735 22068818 -260124846 + L2 LINE L2 3164 3248 -24 311 296 134 12 chr1 22070235 22070407 -260123257 - MIR SINE MIR -33 229 37 185 276 35 0 chr1 22070903 22070961 -260122703 - MIR SINE MIR -202 60 1 1224 208 117 47 chr1 22071000 22071341 -260122323 - MLT1A1 LTR MaLR 0 365 1 999 103 0 0 chr1 22071352 22071498 -260122166 + (TGGA)n Simple_repeat Simple_repeat 1 146 0 258 172 35 0 chr1 22071875 22071933 -260121731 + (GCTG)n Simple_repeat Simple_repeat 4 63 0 938 191 38 24 chr1 22072545 22072754 -260120910 - MIR SINE MIR 0 262 51 411 254 46 101 chr1 22072789 22072865 -260120799 - L1ME4a LINE L1 -225 5896 5817 2122 85 0 3 chr1 22072865 22073188 -260120476 - AluSq SINE Alu 0 323 2 411 254 46 101 chr1 22073188 22073326 -260120338 - L1ME4a LINE L1 -304 5817 5692 646 314 93 29 chr1 22073760 22074168 -260119496 - L2 LINE L2 -3 3269 2836 206 246 297 25 chr1 22074556 22074674 -260118990 - MIR SINE MIR -13 249 100 209 289 0 0 chr1 22075275 22075327 -260118337 + MIR SINE MIR 80 131 -131 583 198 30 84 chr1 22075437 22075566 -260118098 + MIR SINE MIR 86 206 -56 1645 175 6 19 chr1 22075566 22075880 -260117784 + AluJo SINE Alu 2 311 -1 583 198 30 84 chr1 22075880 22075917 -260117747 + MIR SINE MIR 206 243 -19 259 333 28 9 chr1 22075936 22076044 -260117620 + MIR SINE MIR 150 259 -3 280 213 16 0 chr1 22076073 22076134 -260117530 - MIR SINE MIR -118 144 83 1227 147 18 18 chr1 22076163 22076381 -260117283 - MER20 DNA MER1_type -1 218 1 250 218 82 73 chr1 22076744 22076854 -260116810 + L2 LINE L2 3160 3270 -2 445 224 69 151 chr1 22076930 22076953 -260116711 + MIR SINE MIR 13 36 -226 2373 76 0 3 chr1 22076953 22077257 -260116407 + AluSq SINE Alu 1 303 -10 445 224 69 151 chr1 22077257 22077478 -260116186 + MIR SINE MIR 36 237 -25 193 286 63 0 chr1 22078280 22078343 -260115321 - MIR3 SINE MIR -25 183 117 * 774 292 29 12 chr1 22078330 22078570 -260115094 + MIR SINE MIR 13 256 -6 190 256 0 0 chr1 22078589 22078632 -260115032 - MIR SINE MIR -117 91 49 268 81 0 0 chr1 22079832 22079869 -260113795 + L1MC3 LINE L1 7059 7095 -690 356 286 0 0 chr1 22079871 22079962 -260113702 + MLT1F1 LTR MaLR 35 125 -442 2262 177 128 9 chr1 22079962 22080493 -260113171 + L1MC3 LINE L1 7189 7782 -3 426 200 0 22 chr1 22080664 22080754 -260112910 + L2 LINE L2 3225 3312 -1 334 279 78 8 chr1 22081250 22081379 -260112285 - MIR SINE MIR -100 162 25 634 191 30 0 chr1 22082252 22082383 -260111281 + MIR SINE MIR 47 181 -81 465 278 117 17 chr1 22083454 22083634 -260110030 - MIR SINE MIR -48 214 17 324 0 0 0 chr1 22084413 22084449 -260109215 + (TG)n Simple_repeat Simple_repeat 2 37 0 188 75 0 50 chr1 22084960 22085000 -260108664 + (TTTTTA)n Simple_repeat Simple_repeat 2 39 0 204 40 0 0 chr1 22085016 22085041 -260108623 + (TCC)n Simple_repeat Simple_repeat 2 26 0 35 95 0 0 chr1 22086944 22087049 -260106615 + GC_rich Low_complexity Low_complexity 1 105 0 29 0 0 0 chr1 22087229 22087258 -260106406 + GC_rich Low_complexity Low_complexity 1 29 0 476 233 28 50 chr1 22087858 22088038 -260105626 + GA-rich Low_complexity Low_complexity 2 177 0 25 0 0 0 chr1 22088169 22088194 -260105470 + GC_rich Low_complexity Low_complexity 1 25 0 192 77 0 0 chr1 22088643 22088669 -260104995 + (AGGGGG)n Simple_repeat Simple_repeat 5 30 0 466 325 83 38 chr1 22089365 22089605 -260104059 + MIR SINE MIR 2 252 -10 393 253 127 13 chr1 22089671 22089829 -260103835 - MIR3 SINE MIR -24 184 9 269 196 109 93 chr1 22089971 22090151 -260103513 - MIR SINE MIR -47 215 36 202 242 137 73 chr1 22090510 22090634 -260103030 - MIR SINE MIR -50 212 81 474 256 156 10 chr1 22090955 22091010 -260102654 + MIR SINE MIR 1 47 -215 1671 184 0 3 chr1 22091010 22091303 -260102361 + AluJo SINE Alu 1 292 -20 474 256 156 10 chr1 22091303 22091483 -260102181 + MIR SINE MIR 47 262 0 190 255 0 0 chr1 22091721 22091768 -260101896 + MIR3 SINE MIR 152 198 -10 459 0 0 0 chr1 22092367 22092418 -260101246 + (CA)n Simple_repeat Simple_repeat 1 51 0 218 213 64 0 chr1 22092487 22092534 -260101130 - L2 LINE L2 0 3272 3223 292 172 17 0 chr1 22092773 22092831 -260100833 - MIR3 SINE MIR -41 167 109 213 259 37 0 chr1 22093458 22093539 -260100125 - MIR SINE MIR -99 163 80 195 337 12 12 chr1 22093802 22093888 -260099776 - MIR SINE MIR -119 143 58 426 276 58 26 chr1 22094630 22094786 -260098878 + MIR SINE MIR 34 194 -68 224 275 0 25 chr1 22095200 22095280 -260098384 + GA-rich Low_complexity Low_complexity 3 80 0 207 222 44 0 chr1 22096077 22096122 -260097542 + L2 LINE L2 3218 3264 -8 421 259 104 6 chr1 22096624 22096801 -260096863 - MIR3 SINE MIR -3 205 11 607 283 106 4 chr1 22097053 22097279 -260096385 + MIR SINE MIR 14 262 0 305 287 56 83 chr1 22097401 22097578 -260096086 - L2 LINE L2 -186 3086 2906 1657 164 7 23 chr1 22097578 22097883 -260095781 - AluJo SINE Alu -4 308 9 305 287 56 83 chr1 22097883 22098127 -260095537 - L2 LINE L2 -366 2906 2678 2470 136 40 38 chr1 22098323 22098750 -260094914 + MSTA LTR MaLR 1 428 0 258 266 266 0 chr1 22098801 22098895 -260094769 + L2 LINE L2 3154 3272 0 1990 114 14 0 chr1 22098906 22099195 -260094469 + AluSq SINE Alu 1 293 -20 298 361 57 45 chr1 22100711 22100955 -260092709 + MIR SINE MIR 10 256 -6 278 328 22 50 chr1 22103602 22103782 -260089882 - MER5A DNA MER1_type 0 189 15 1633 177 3 14 chr1 22104119 22104401 -260089263 + AluJo SINE Alu 1 281 -31 2045 123 3 0 chr1 22104401 22104685 -260088979 - AluSx SINE Alu -27 285 1 1633 177 3 14 chr1 22104685 22104696 -260088968 + AluJo SINE Alu 281 291 -21 27 29 0 0 chr1 22104696 22104730 -260088934 + AT_rich Low_complexity Low_complexity 1 34 0 355 252 133 15 chr1 22104799 22104934 -260088730 - MIR SINE MIR -38 224 74 28 0 0 0 chr1 22105162 22105190 -260088474 + AT_rich Low_complexity Low_complexity 1 28 0 1814 166 7 0 chr1 22105726 22106021 -260087643 - AluJb SINE Alu -15 297 1 335 273 81 0 chr1 22106199 22106298 -260087366 - L2 LINE L2 -10 3262 3156 581 253 0 20 chr1 22106483 22106633 -260087031 + L2 LINE L2 3167 3313 0 664 189 69 6 chr1 22106634 22106809 -260086855 - MIR SINE MIR -3 259 74 368 301 87 20 chr1 22106866 22107065 -260086599 + MIR SINE MIR 40 249 -13 1794 175 7 0 chr1 22107154 22107463 -260086201 + AluJo SINE Alu 1 311 -1 283 215 0 32 chr1 22107467 22107560 -260086104 + GA-rich Low_complexity Low_complexity 3 92 0 302 160 0 0 chr1 22107930 22107980 -260085684 - AluSp/q SINE Alu -6 297 248 325 231 44 44 chr1 22108129 22108220 -260085444 - L2 LINE L2 -13 3259 3169 181 312 269 0 chr1 22108291 22108384 -260085280 + MIR SINE MIR 33 150 -58 2333 96 0 0 chr1 22108419 22108731 -260084933 + AluSx SINE Alu 1 312 0 1850 108 48 10 chr1 22108796 22109091 -260084573 + AluSx SINE Alu 1 306 -6 584 279 249 10 chr1 22109213 22109518 -260084146 + L2 LINE L2 2936 3313 0 293 283 94 25 chr1 22110328 22110487 -260083177 - MIR SINE MIR -44 218 49 430 292 146 41 chr1 22110582 22110801 -260082863 - MIR SINE MIR 0 262 21 1718 135 42 14 chr1 22110904 22111193 -260082471 - AluJo SINE Alu -15 297 1 463 288 43 33 chr1 22111208 22111358 -260082306 - L1MC/D LINE L1 -2129 5679 5525 2180 113 3 0 chr1 22111358 22111658 -260082006 - AluSx SINE Alu -11 301 1 463 288 43 33 chr1 22111658 22111691 -260081973 - L1MC/D LINE L1 -2283 5525 5494 232 236 14 0 chr1 22112043 22112115 -260081549 + L1MC/D LINE L1 5703 5775 -2033 1123 75 0 7 chr1 22112391 22112537 -260081127 + AluSq/x SINE Alu 1 145 -168 2182 89 6 25 chr1 22112537 22112852 -260080812 + AluSp SINE Alu 1 309 -4 233 317 123 45 chr1 22112859 22113384 -260080280 - L2 LINE L2 0 3272 2698 233 299 37 56 chr1 22114179 22114286 -260079378 - L2 LINE L2 -12 3301 3197 2122 106 0 20 chr1 22114391 22114693 -260078971 + AluSx SINE Alu 1 296 -16 1678 123 14 35 chr1 22114718 22115003 -260078661 + AluSq SINE Alu 1 279 -34 197 148 0 19 chr1 22115004 22115058 -260078606 + (GA)n Simple_repeat Simple_repeat 2 54 0 843 249 24 0 chr1 22115058 22115227 -260078437 + FRAM SINE Alu 2 174 -2 362 145 0 14 chr1 22115227 22115296 -260078368 + (GGAA)n Simple_repeat Simple_repeat 1 68 0 2253 97 7 0 chr1 22115465 22115765 -260077899 + AluSc SINE Alu 1 302 -7 2175 106 0 3 chr1 22116149 22116451 -260077213 - AluSx SINE Alu -11 301 1 433 128 128 0 chr1 22116459 22116553 -260077111 - L1MA10 LINE L1 -1 6333 6228 1991 166 19 48 chr1 22116553 22116932 -260076732 - LOR1b LTR ERV1 0 461 94 2224 100 0 3 chr1 22116954 22117255 -260076409 - AluSg SINE Alu -10 300 1 2106 105 10 7 chr1 22117274 22117580 -260076084 - AluSx SINE Alu -5 307 1 10130 62 47 78 chr1 22117580 22117734 -260075930 + HUERS-P1 LTR ERV1 2210 2367 -3896 2181 101 7 0 chr1 22117734 22118042 -260075622 + AluSp SINE Alu 1 310 -3 10130 62 47 78 chr1 22118042 22118364 -260075300 + HUERS-P1 LTR ERV1 2367 2698 -3565 2081 91 25 7 chr1 22118364 22118649 -260075015 + AluSq SINE Alu 1 290 -23 10130 62 47 78 chr1 22118649 22118686 -260074978 + HUERS-P1 LTR ERV1 2698 2735 -3528 2381 87 0 0 chr1 22118686 22118998 -260074666 + AluSx SINE Alu 1 312 0 10130 62 47 78 chr1 22118998 22119780 -260073884 + HUERS-P1 LTR ERV1 2735 3540 -2723 1998 101 35 0 chr1 22119780 22120066 -260073598 + AluSx SINE Alu 5 300 -12 10130 62 47 78 chr1 22120066 22120260 -260073404 + HUERS-P1 LTR ERV1 3540 3739 -2524 2233 88 3 0 chr1 22120260 22120554 -260073110 + AluSq SINE Alu 1 295 -18 1977 112 35 0 chr1 22120560 22120846 -260072818 + AluSx SINE Alu 1 296 -16 10130 62 47 78 chr1 22120846 22121040 -260072624 + HUERS-P1 LTR ERV1 3744 3851 -2412 1130 58 7 0 chr1 22121041 22121179 -260072485 - AluSp SINE Alu -174 139 1 889 188 38 0 chr1 22121203 22121363 -260072301 + FRAM SINE Alu 1 166 0 214 303 50 30 chr1 22122374 22122473 -260071191 + MIR SINE MIR 8 108 -154 200 195 0 24 chr1 22123148 22123189 -260070475 + G-rich Low_complexity Low_complexity 4 43 0 233 115 0 19 chr1 22124466 22124518 -260069146 + (GGA)n Simple_repeat Simple_repeat 2 52 0 36 23 0 0 chr1 22124579 22124622 -260069042 + GC_rich Low_complexity Low_complexity 1 43 0 855 154 37 37 chr1 22126834 22126996 -260066668 + AluJo SINE Alu 126 287 -25 300 27 0 0 chr1 22127084 22127121 -260066543 + (CA)n Simple_repeat Simple_repeat 2 38 0 423 295 35 95 chr1 22128250 22128573 -260065091 + L2 LINE L2 2845 3135 -137 2171 97 10 0 chr1 22128573 22128872 -260064792 - AluSp SINE Alu -11 302 1 423 295 35 95 chr1 22128872 22128999 -260064665 + L2 LINE L2 3135 3268 -4 355 324 1 39 chr1 22129401 22129549 -260064115 + MIR3 SINE MIR 1 144 -64 2259 103 3 0 chr1 22129549 22129860 -260063804 + AluSq SINE Alu 1 312 -1 355 324 1 39 chr1 22129860 22129879 -260063785 + MIR3 SINE MIR 144 162 -46 2259 63 0 7 chr1 22129880 22130197 -260063467 - AluY SINE Alu 0 315 1 1311 179 0 105 chr1 22130205 22130382 -260063282 - AluY SINE Alu -21 290 161 369 0 0 0 chr1 22130382 22130423 -260063241 + (TG)n Simple_repeat Simple_repeat 1 41 0 1311 179 0 105 chr1 22130423 22130569 -260063095 - AluY SINE Alu -150 161 1 28 29 0 0 chr1 22130569 22130604 -260063060 + AT_rich Low_complexity Low_complexity 1 35 0 856 159 99 7 chr1 22130618 22130769 -260062895 - AluJb SINE Alu -19 293 129 212 325 104 0 chr1 22131125 22131202 -260062462 + L2 LINE L2 3188 3272 0 568 254 101 0 chr1 22131732 22131870 -260061794 + MLT1J2 LTR MaLR 25 176 -274 1147 160 80 9 chr1 22131881 22132093 -260061571 + AluJo SINE Alu 85 311 -1 552 225 122 10 chr1 22132120 22132323 -260061341 + MLT1J1 LTR MaLR 224 450 0 1363 262 73 67 chr1 22132324 22132791 -260060873 + MLT1K LTR MaLR 45 517 -71 2133 95 0 14 chr1 22132791 22133086 -260060578 + AluSg SINE Alu 1 291 -19 1363 262 73 67 chr1 22133086 22133152 -260060512 + MLT1K LTR MaLR 517 581 -7 301 270 54 103 chr1 22133662 22133866 -260059798 + MIR SINE MIR 36 229 -33 1835 115 0 0 chr1 22134715 22134968 -260058696 + AluSq SINE Alu 1 253 -60 791 154 0 0 chr1 22135165 22135282 -260058382 - FLAM_C SINE Alu -25 118 2 36 23 0 0 chr1 22135344 22135387 -260058277 + GC_rich Low_complexity Low_complexity 1 43 0 251 111 0 19 chr1 22135448 22135502 -260058162 + (TCC)n Simple_repeat Simple_repeat 3 55 0 200 195 0 24 chr1 22136777 22136818 -260056846 + C-rich Low_complexity Low_complexity 4 43 0 214 303 50 30 chr1 22137493 22137592 -260056072 - MIR SINE MIR -154 108 8 1663 169 32 35 chr1 22138586 22138780 -260054884 - AluJb SINE Alu 0 312 118 2612 57 3 0 chr1 22138780 22139080 -260054584 + AluSp SINE Alu 1 301 -12 1663 169 32 35 chr1 22139080 22139198 -260054466 - AluJb SINE Alu -194 118 1 2037 153 0 0 chr1 22139303 22139598 -260054066 - AluSx SINE Alu -17 295 1 2107 126 8 70 chr1 22139946 22140076 -260053588 - MER1B DNA MER1_type -2373 337 201 2349 109 3 0 chr1 22140076 22140378 -260053286 - AluSx SINE Alu -9 303 1 2107 126 8 70 chr1 22140378 22140605 -260053059 - MER1B DNA MER1_type -2509 201 2 1414 239 98 70 chr1 22140860 22140980 -260052684 - HAL1 LINE L1 -30 2477 2362 2191 99 35 0 chr1 22140980 22141264 -260052400 - AluSx SINE Alu -18 294 1 1414 239 98 70 chr1 22141264 22141452 -260052212 - HAL1 LINE L1 -145 2362 2181 2501 67 0 13 chr1 22141452 22141764 -260051900 - AluY SINE Alu -3 308 1 1414 239 98 70 chr1 22141764 22141944 -260051720 - HAL1 LINE L1 -326 2181 2008 2534 73 0 13 chr1 22141944 22142258 -260051406 + AluY SINE Alu 2 311 0 1414 239 98 70 chr1 22142258 22142604 -260051060 - HAL1 LINE L1 -499 2008 1673 2275 114 133 0 chr1 22142604 22142980 -260050684 - MSTA LTR MaLR 0 428 3 1414 239 98 70 chr1 22142980 22143542 -260050122 - HAL1 LINE L1 -834 1673 963 4486 139 76 21 chr1 22143560 22144034 -260049630 - L1MB2 LINE L1 -1 6170 5724 2354 81 0 7 chr1 22144034 22144329 -260049335 + AluSq SINE Alu 4 296 -17 4486 139 76 21 chr1 22144329 22144753 -260048911 - L1MB2 LINE L1 -447 5724 5225 1734 168 31 7 chr1 22144753 22145039 -260048625 - AluSx SINE Alu -19 293 1 2290 80 10 3 chr1 22145121 22145410 -260048254 + AluSx SINE Alu 1 291 -21 228 192 110 14 chr1 22145444 22145517 -260048147 - HAL1 LINE L1 -1637 870 791 655 296 91 66 chr1 22145628 22146070 -260047594 - HAL1 LINE L1 -1838 669 217 1051 148 131 48 chr1 22146349 22146629 -260047035 + MER21A LTR ERV1 1 386 -545 1778 138 0 0 chr1 22146629 22146883 -260046781 + AluSx SINE Alu 55 308 -4 1051 148 131 48 chr1 22146883 22146961 -260046703 + MER21A LTR ERV1 386 456 -475 2393 91 3 3 chr1 22147127 22147435 -260046229 + AluSg SINE Alu 1 308 -2 797 267 100 46 chr1 22147630 22148019 -260045645 - L2 LINE L2 -6 3307 2898 789 171 0 0 chr1 22148165 22148288 -260045376 + FRAM SINE Alu 40 162 -14 405 288 174 0 chr1 22148354 22148486 -260045178 + MIR3 SINE MIR 36 190 -18 2327 72 10 7 chr1 22148685 22148975 -260044689 + AluSx SINE Alu 1 291 -21 228 192 110 14 chr1 22149009 22149082 -260044582 - HAL1 LINE L1 -1637 870 791 261 304 109 41 chr1 22149193 22149561 -260044103 - HAL1 LINE L1 -1838 669 277 2502 135 107 58 chr1 22149912 22150192 -260043472 + MER21A LTR ERV1 1 266 -665 1807 132 0 0 chr1 22150192 22150443 -260043221 + AluSx SINE Alu 55 305 -7 2502 135 107 58 chr1 22150443 22150953 -260042711 + MER21A LTR ERV1 266 907 -24 1539 127 75 34 chr1 22151116 22151383 -260042281 - AluJb SINE Alu -24 288 11 2505 227 11 4 chr1 22151472 22152005 -260041659 + MLT1F LTR MaLR 1 537 -5 631 292 87 73 chr1 22152018 22152504 -260041160 + L2 LINE L2 2785 3271 -1 1341 109 55 9 chr1 22152569 22152789 -260040875 - MER30 DNA MER1_type 0 230 1 381 43 0 0 chr1 22153125 22153172 -260040492 + (TG)n Simple_repeat Simple_repeat 1 47 0 730 216 30 6 chr1 22153313 22153520 -260040144 - MIR SINE MIR 0 262 52 1695 147 102 0 chr1 22153971 22154236 -260039428 - AluJb SINE Alu -20 292 1 419 242 75 8 chr1 22154334 22154454 -260039210 - L2 LINE L2 -3 3310 3183 2089 117 19 13 chr1 22154491 22154662 -260039002 - AluSx SINE Alu -3 309 134 2444 78 0 0 chr1 22154662 22154976 -260038688 - AluY SINE Alu 0 311 1 2089 117 19 13 chr1 22154976 22155111 -260038553 - AluSx SINE Alu -178 134 1 755 205 62 25 chr1 22155272 22155490 -260038174 - MLT1F1 LTR MaLR 0 587 357 2127 102 53 0 chr1 22155490 22155774 -260037890 - AluSx SINE Alu -13 299 1 502 217 232 20 chr1 22155774 22155972 -260037692 + L2 LINE L2 791 1030 -2284 1730 194 48 66 chr1 22155990 22156409 -260037255 - MLT1D LTR MaLR 0 505 125 636 132 142 9 chr1 22156409 22156515 -260037149 - FLAM_A SINE Alu -13 120 1 1730 194 48 66 chr1 22156515 22156627 -260037037 - MLT1D LTR MaLR -380 125 13 2600 272 155 32 chr1 22156628 22157752 -260035912 + L2 LINE L2 1075 2336 -978 1001 178 0 6 chr1 22157755 22157918 -260035746 + AluJo SINE Alu 122 283 -29 871 302 58 63 chr1 22157949 22158171 -260035493 + L2 LINE L2 2411 2633 -680 3489 89 16 0 chr1 22158171 22158622 -260035042 - LTR22A LTR ERVK 0 458 1 871 302 58 63 chr1 22158622 22159140 -260034524 + L2 LINE L2 2633 3143 -170 1154 136 58 66 chr1 22159140 22159260 -260034404 - MLT1D LTR MaLR 0 505 386 2207 79 14 24 chr1 22159260 22159550 -260034114 - AluSx SINE Alu -13 299 13 1154 136 58 66 chr1 22159550 22159561 -260034103 - MLT1D LTR MaLR -119 386 376 1835 172 0 13 chr1 22159561 22159864 -260033800 - AluJo SINE Alu -13 299 1 1154 136 58 66 chr1 22159864 22159989 -260033675 - MLT1D LTR MaLR -129 376 250 955 166 7 0 chr1 22160043 22160194 -260033470 + FRAM SINE Alu 1 152 -24 693 179 0 26 chr1 22160224 22160341 -260033323 - FLAM_A SINE Alu -16 117 4 1087 158 15 15 chr1 22160342 22160538 -260033126 - MLT1D LTR MaLR -309 196 1 840 144 0 0 chr1 22160602 22160720 -260032944 - FLAM_C SINE Alu -25 118 1 301 211 0 42 chr1 22160771 22160842 -260032822 + L2 LINE L2 3241 3308 -5 288 341 61 30 chr1 22161694 22161826 -260031838 - L2 LINE L2 -5 3308 3173 275 305 66 0 chr1 22162053 22162204 -260031460 + MER104 DNA Tc2 19 179 -1 333 278 166 30 chr1 22162390 22162559 -260031105 + MIR SINE MIR 12 203 -59 * 772 252 24 19 chr1 22162538 22162744 -260030920 - L2 LINE L2 0 3313 3107 1558 230 100 46 chr1 22162781 22163067 -260030597 - MLT1J LTR MaLR -2 509 184 2208 102 3 0 chr1 22163067 22163375 -260030289 + AluSp SINE Alu 1 309 0 1558 230 100 46 chr1 22163375 22163566 -260030098 - MLT1J LTR MaLR -327 184 5 2370 109 3 0 chr1 22164180 22164491 -260029173 - AluSx SINE Alu 0 312 1 309 224 63 69 chr1 22164948 22165122 -260028542 + MLT1K LTR MaLR 378 550 -38 357 256 263 0 chr1 22165129 22165262 -260028402 + MER96 DNA MER1_type? 8 175 0 2399 99 3 6 chr1 22166322 22166636 -260027028 + AluSq SINE Alu 1 313 0 479 294 23 11 chr1 22167011 22167188 -260026476 + MLT1K LTR MaLR 147 325 -263 272 208 154 87 chr1 22167248 22167397 -260026267 + MLT1K LTR MaLR 419 577 -11 2420 33 0 4 chr1 22167402 22167705 -260025959 + AluY SINE Alu 8 309 0 592 200 8 15 chr1 22168019 22168149 -260025515 - MLT1L LTR MaLR -354 261 133 184 324 93 7 chr1 22168191 22168330 -260025334 + L2 LINE L2 1614 1764 -1550 392 314 33 8 chr1 22168479 22168600 -260025064 + L3 LINE CR1 1410 1533 -44 260 220 186 0 chr1 22168610 22168669 -260024995 - L2 LINE L2 0 3313 3244 191 333 42 33 chr1 22168743 22168863 -260024801 - MIR SINE MIR -60 202 82 2397 83 3 16 chr1 22168941 22169254 -260024410 + AluSx SINE Alu 1 309 -3 457 289 31 31 chr1 22169261 22169420 -260024244 - MIR3 SINE MIR -25 183 25 408 211 81 32 chr1 22170151 22170274 -260023390 + MIR SINE MIR 102 230 -32 1018 178 5 13 chr1 22170288 22170305 -260023359 + L1M4 LINE L1 4974 4990 -1156 2659 53 0 0 chr1 22170305 22170606 -260023058 - AluY SINE Alu -10 301 1 1018 178 5 13 chr1 22170606 22170823 -260022841 + L1M4 LINE L1 4990 5201 -945 565 106 0 12 chr1 22170863 22170948 -260022716 - LTR8 LTR ERV1 -105 586 503 448 296 31 31 chr1 22171071 22171230 -260022434 + MIR3 SINE MIR 25 183 -25 1904 105 4 16 chr1 22171237 22171494 -260022170 - AluSx SINE Alu -12 300 47 4443 40 54 15 chr1 22171494 22172090 -260021574 + HUERS-P1 LTR ERV1 5645 6263 0 3681 74 2 12 chr1 22172090 22172589 -260021075 + LTR8 LTR ERV1 1 494 -197 13154 48 42 65 chr1 22172589 22173259 -260020405 - HUERS-P1 LTR ERV1 -1926 4337 3653 2199 104 31 0 chr1 22173259 22173547 -260020117 - AluSx SINE Alu -15 297 1 2363 88 3 0 chr1 22173553 22173847 -260019817 - AluSq SINE Alu -18 295 1 13154 48 42 65 chr1 22173847 22174041 -260019623 - HUERS-P1 LTR ERV1 -2615 3648 3451 2112 101 35 0 chr1 22174041 22174327 -260019337 - AluSx SINE Alu -12 300 5 13154 48 42 65 chr1 22174327 22175108 -260018556 - HUERS-P1 LTR ERV1 -2812 3451 2653 2509 87 0 0 chr1 22175108 22175420 -260018244 - AluSx SINE Alu 0 312 1 13154 48 42 65 chr1 22175420 22175457 -260018207 - HUERS-P1 LTR ERV1 -3610 2653 2617 2209 91 25 7 chr1 22175457 22175742 -260017922 - AluSq SINE Alu -23 290 1 13154 48 42 65 chr1 22175742 22176064 -260017600 - HUERS-P1 LTR ERV1 -3646 2617 2368 2300 101 7 0 chr1 22176064 22176372 -260017292 - AluSp SINE Alu -3 310 1 13154 48 42 65 chr1 22176372 22176397 -260017267 - HUERS-P1 LTR ERV1 -3895 2368 2344 256 125 0 21 chr1 22176497 22176545 -260017119 + (TCCCC)n Simple_repeat Simple_repeat 1 47 0 1566 196 43 7 chr1 22176545 22176826 -260016838 - AluJo SINE Alu -21 291 1 2097 155 7 0 chr1 22177889 22178199 -260015465 - AluSx SINE Alu 0 312 1 607 294 21 0 chr1 22178686 22178873 -260014791 + MIR SINE MIR 66 256 -6 2324 86 0 0 chr1 22179001 22179336 -260014328 - AluSg SINE Alu 0 335 1 1057 264 122 31 chr1 22179338 22179807 -260013857 + L2 LINE L2 2779 3266 -47 1553 179 86 24 chr1 22179832 22180166 -260013498 + MLT1A2 LTR MaLR 4 358 -16 906 175 123 115 chr1 22180166 22180515 -260013149 - MSTD LTR MaLR 0 396 45 237 135 0 0 chr1 22180589 22180626 -260013038 - MSTD LTR MaLR -391 37 1 205 205 0 0 chr1 22180763 22180802 -260012862 + A-rich Low_complexity Low_complexity 1 39 0 379 323 31 0 chr1 22181036 22181163 -260012501 - MIR SINE MIR -14 248 118 2192 90 31 7 chr1 22181217 22181506 -260012158 - AluY SINE Alu -15 296 1 2025 161 0 3 chr1 22181611 22181916 -260011748 + AluJb SINE Alu 1 304 -8 196 160 20 80 chr1 22182037 22182087 -260011577 - MER5A DNA MER1_type 0 189 143 556 149 9 28 chr1 22182098 22182205 -260011459 - FLAM_A SINE Alu -4 138 34 667 196 27 34 chr1 22182205 22182353 -260011311 - MER5A DNA MER1_type -40 149 3 2450 81 0 13 chr1 22182512 22182810 -260010854 - AluSq SINE Alu -19 294 1 1517 118 9 22 chr1 22182810 22183038 -260010626 - AluJb SINE Alu -10 302 78 2403 103 0 3 chr1 22183855 22184167 -260009497 - AluSx SINE Alu -1 311 1 1863 176 7 3 chr1 22184798 22185104 -260008560 + AluJo SINE Alu 1 307 -5 1981 161 3 3 chr1 22185551 22185862 -260007802 - AluJo SINE Alu -1 311 1 262 323 20 10 chr1 22185973 22186072 -260007592 - L2 LINE L2 0 3272 3173 244 261 0 15 chr1 22186305 22186370 -260007294 - MIR SINE MIR -25 237 174 2288 88 27 0 chr1 22186537 22186833 -260006831 + AluSx SINE Alu 1 304 -8 250 304 65 11 chr1 22186856 22186948 -260006716 - MIR SINE MIR -137 125 29 511 252 0 0 chr1 22187113 22187216 -260006448 + L2 LINE L2 3205 3307 -6 2523 68 0 7 chr1 22187305 22187615 -260006049 - AluY SINE Alu -3 308 1 454 289 20 85 chr1 22187870 22188071 -260005593 - L2 LINE L2 0 3272 3085 249 310 45 39 chr1 22188316 22188471 -260005193 + MIR SINE MIR 21 176 -86 367 283 102 17 chr1 22188857 22189063 -260004601 + MIR3 SINE MIR 4 231 -31 401 145 224 0 chr1 22190103 22190179 -260003485 + AluJ/FLAM SINE Alu 2 94 -218 1935 132 0 7 chr1 22190119 22190392 -260003272 + AluJo SINE Alu 35 305 -7 408 306 2 0 chr1 22190478 22190604 -260003060 + MIR SINE MIR 34 160 -75 609 321 0 16 chr1 22190626 22190819 -260002845 + MIR SINE MIR 20 209 -53 203 244 0 0 chr1 22191488 22191533 -260002131 + (CCCTG)n Simple_repeat Simple_repeat 1 45 0 2020 129 7 7 chr1 22191714 22192008 -260001656 - AluSx SINE Alu -18 294 1 2167 95 3 11 chr1 22192297 22192607 -260001057 - AluSx SINE Alu 0 308 1 196 311 14 0 chr1 22192803 22192877 -260000787 + L2 LINE L2 2858 2932 -381 249 264 0 110 chr1 22193001 22193092 -260000572 + L1ME3A LINE L1 6052 6132 -38 332 219 32 0 chr1 22193207 22193330 -260000334 + (CA)n Simple_repeat Simple_repeat 2 128 0 269 312 28 18 chr1 22193330 22193439 -260000225 + L2 LINE L2 3189 3298 -15 1133 155 80 5 chr1 22193440 22193640 -260000024 + AluJb SINE Alu 85 299 -13 219 314 0 0 chr1 22194100 22194170 -259999494 - MIR3 SINE MIR -54 154 85 2423 109 0 0 chr1 22194488 22194792 -259998872 + AluSx SINE Alu 1 304 -8 384 297 30 35 chr1 22195064 22195266 -259998398 - MIR SINE MIR -3 259 59 223 274 27 0 chr1 22195467 22195540 -259998124 - MIR SINE MIR -115 147 73 231 281 8 25 chr1 22196515 22196636 -259997028 + L2 LINE L2 2871 2989 -283 208 267 0 0 chr1 22197040 22197085 -259996579 - MIR SINE MIR -110 152 108 241 118 294 15 chr1 22197505 22197573 -259996091 - MIR SINE MIR -62 146 60 287 65 22 0 chr1 22197588 22197634 -259996030 + (CA)n Simple_repeat Simple_repeat 2 48 0 2302 100 0 17 chr1 22197676 22197976 -259995688 - AluSx SINE Alu -17 295 1 2516 73 0 10 chr1 22199150 22199464 -259994200 - AluY SINE Alu 0 311 1 195 37 0 0 chr1 22199587 22199614 -259994050 + L2 LINE L2 3028 3054 -218 211 325 102 30 chr1 22200159 22200325 -259993339 + MIR SINE MIR 70 247 -15 2144 141 0 25 chr1 22200484 22200804 -259992860 + AluSx SINE Alu 1 312 0 982 200 11 0 chr1 22201008 22201193 -259992471 + MIR SINE MIR 2 188 -74 1115 133 13 0 chr1 22201633 22201791 -259991873 - FRAM SINE Alu -8 168 9 2579 51 0 3 chr1 22201806 22202101 -259991563 - AluY SINE Alu -17 294 1 2025 161 0 3 chr1 22202206 22202511 -259991153 + AluJb SINE Alu 1 304 -8 518 149 9 28 chr1 22202693 22202800 -259990864 - FLAM_A SINE Alu -4 138 34 616 196 27 34 chr1 22202800 22202948 -259990716 - MER5A DNA MER1_type -40 149 3 2460 81 0 13 chr1 22203106 22203404 -259990260 - AluSq SINE Alu -19 294 1 1526 118 9 22 chr1 22203404 22203632 -259990032 - AluJb SINE Alu -10 302 78 2412 103 0 3 chr1 22204449 22204761 -259988903 - AluSx SINE Alu -1 311 1 1874 176 7 3 chr1 22205392 22205698 -259987966 + AluJo SINE Alu 1 307 -5 1988 161 3 3 chr1 22206145 22206456 -259987208 - AluJo SINE Alu -1 311 1 245 323 20 10 chr1 22206567 22206666 -259986998 - L2 LINE L2 0 3272 3173 229 321 0 12 chr1 22206880 22206964 -259986700 - MIR SINE MIR -6 256 174 2298 88 27 0 chr1 22207131 22207427 -259986237 + AluSx SINE Alu 1 304 -8 237 327 59 10 chr1 22207441 22207542 -259986122 - MIR SINE MIR -128 134 29 487 252 0 0 chr1 22207707 22207810 -259985854 + L2 LINE L2 3205 3307 -6 2540 68 0 7 chr1 22207899 22208209 -259985455 - AluY SINE Alu -3 308 1 407 289 20 85 chr1 22208464 22208665 -259984999 - L2 LINE L2 0 3272 3085 217 310 45 39 chr1 22208910 22209065 -259984599 + MIR SINE MIR 21 176 -86 335 265 98 23 chr1 22209451 22209583 -259984081 + MIR3 SINE MIR 4 145 -63 1935 132 0 7 chr1 22210713 22210986 -259982678 + AluJo SINE Alu 35 305 -7 408 306 2 0 chr1 22211072 22211198 -259982466 + MIR SINE MIR 34 160 -75 609 321 0 16 chr1 22211220 22211413 -259982251 + MIR SINE MIR 20 209 -53 203 244 0 0 chr1 22212083 22212128 -259981536 + (CCCTG)n Simple_repeat Simple_repeat 1 45 0 1966 126 10 10 chr1 22212309 22212603 -259981061 - AluSx SINE Alu -18 294 1 1803 181 23 16 chr1 22212758 22213068 -259980596 + AluJo SINE Alu 1 312 0 487 283 40 0 chr1 22213312 22213464 -259980200 - MIR SINE MIR 0 262 105 1759 158 14 11 chr1 22213485 22213764 -259979900 + AluJo SINE Alu 1 280 -32 369 0 0 0 chr1 22213764 22213805 -259979859 + (TAA)n Simple_repeat Simple_repeat 1 41 0 277 276 112 33 chr1 22213876 22214028 -259979636 + MIR SINE MIR 2 165 -97 740 276 79 21 chr1 22214145 22214475 -259979189 + MLT1K LTR MaLR 210 558 -30 412 284 0 0 chr1 22214501 22214596 -259979068 + MIR SINE MIR 160 254 -8 362 289 61 0 chr1 22214615 22214729 -259978935 - L2 LINE L2 -36 3236 3116 2286 98 0 28 chr1 22214853 22215171 -259978493 - AluSg SINE Alu -1 309 1 330 220 42 25 chr1 22215430 22215441 -259978223 + L1M LINE L1 5256 5265 -2777 2611 42 0 16 chr1 22215441 22215749 -259977915 - AluY SINE Alu -7 304 2 330 220 42 25 chr1 22215749 22215855 -259977809 + L1M LINE L1 5265 5375 -2667 1988 154 0 10 chr1 22215981 22216292 -259977372 + AluJb SINE Alu 1 308 -4 588 330 74 24 chr1 22216325 22216741 -259976923 + L1ME LINE L1 5255 5698 -464 1967 155 0 16 chr1 22216754 22217071 -259976593 - AluSx SINE Alu 0 312 1 761 273 15 25 chr1 22217074 22217467 -259976197 - L1M4 LINE L1 -1107 5039 4609 845 146 16 0 chr1 22217594 22217717 -259975947 + FLAM_C SINE Alu 1 125 -18 322 254 36 42 chr1 22217755 22217920 -259975744 - L1M4 LINE L1 -2658 3488 3325 * 470 299 27 58 chr1 22217908 22218076 -259975588 - L1M4 LINE L1 -3381 2765 2593 2490 60 0 3 chr1 22218076 22218377 -259975287 + AluY SINE Alu 1 300 -11 470 299 27 58 chr1 22218377 22218653 -259975011 - L1M4 LINE L1 -3553 2593 2335 417 214 118 56 chr1 22218674 22218739 -259974925 - Charlie4 DNA MER1_type -1 1960 1900 2180 138 0 13 chr1 22218739 22219051 -259974613 - AluSx SINE Alu -4 308 1 2276 93 0 0 chr1 22219060 22219364 -259974300 - AluSg SINE Alu 0 304 1 417 214 118 56 chr1 22219364 22219464 -259974200 - Charlie4 DNA MER1_type -68 1893 1772 2119 144 0 0 chr1 22219464 22219763 -259973901 - AluSx SINE Alu -13 299 1 277 361 68 5 chr1 22220501 22220692 -259972972 + LTR67 LTR ERVL 352 554 -3 1951 154 7 0 chr1 22221083 22221394 -259972270 + AluJb SINE Alu 1 313 0 2306 66 45 0 chr1 22221407 22221694 -259971970 + AluY SINE Alu 1 300 -11 1053 243 37 90 chr1 22221838 22221957 -259971707 - L2 LINE L2 0 3313 3189 2362 112 3 0 chr1 22221957 22222262 -259971402 - AluSx SINE Alu -6 306 1 1053 243 37 90 chr1 22222262 22222574 -259971090 - L2 LINE L2 -124 3189 2905 1873 94 134 7 chr1 22222654 22222929 -259970735 + AluY SINE Alu 1 310 -1 1340 112 0 0 chr1 22223082 22223251 -259970413 - AluSx SINE Alu -143 169 1 182 293 26 43 chr1 22223975 22224091 -259969573 - L3 LINE CR1 -341 1236 1123 * 439 228 148 0 chr1 22224088 22224237 -259969427 + L2 LINE L2 2909 3079 -193 239 316 53 0 chr1 22224364 22224459 -259969205 - L2 LINE L2 -250 3022 2923 185 207 17 69 chr1 22224596 22224654 -259969010 - L2 LINE L2 -233 3080 3026 292 87 0 0 chr1 22224820 22224926 -259968738 - Alu SINE Alu 0 362 257 587 146 23 11 chr1 22225038 22225215 -259968449 + CT-rich Low_complexity Low_complexity 1 179 0 617 192 24 0 chr1 22225219 22225344 -259968320 - FRAM SINE Alu -11 165 38 1074 283 76 43 chr1 22225352 22225864 -259967800 + L2 LINE L2 2005 2533 -781 277 114 0 0 chr1 22225874 22225918 -259967746 + L1P5 LINE L1 5748 5791 -360 309 258 34 45 chr1 22225919 22226008 -259967656 + L1MC4 LINE L1 6614 6701 -1341 2562 52 43 22 chr1 22226008 22226377 -259967287 + L1PB1 LINE L1 5774 6150 -1 392 339 203 10 chr1 22226388 22227027 -259966637 + L2 LINE L2 2531 3296 -17 234 340 20 0 chr1 22227400 22227500 -259966164 - MIR SINE MIR 0 262 161 888 235 161 37 chr1 22227503 22227907 -259965757 - MLT1H LTR MaLR 0 549 96 2528 80 0 0 chr1 22227965 22228276 -259965388 - AluY SINE Alu 0 311 1 345 243 39 0 chr1 22228277 22228380 -259965284 - MIR SINE MIR -97 165 59 247 208 0 0 chr1 22228554 22228602 -259965062 + MIR SINE MIR 97 144 -118 2202 125 0 10 chr1 22228655 22228959 -259964705 + AluSx SINE Alu 1 301 -11 573 229 19 32 chr1 22228975 22229132 -259964532 + L2 LINE L2 3159 3313 0 1031 181 108 77 chr1 22229325 22229650 -259964014 - MLT1J2 LTR MaLR -113 337 3 481 278 21 98 chr1 22229726 22229960 -259963704 + L2 LINE L2 3094 3309 -4 2513 132 45 22 chr1 22229960 22230424 -259963240 - L1M1 LINE L1 -561 5739 5265 1720 117 0 0 chr1 22230424 22230654 -259963010 + AluSx SINE Alu 64 293 -19 2642 160 13 23 chr1 22230655 22230828 -259962836 + L1MA4 LINE L1 5777 5950 -350 2448 108 0 0 chr1 22230828 22231134 -259962530 + AluSx SINE Alu 1 306 -6 2642 160 13 23 chr1 22231134 22231486 -259962178 + L1MA4 LINE L1 5950 6297 -3 2114 123 7 7 chr1 22231810 22232119 -259961545 + AluSx SINE Alu 1 309 -3 1972 178 0 10 chr1 22232239 22232553 -259961111 - AluJb SINE Alu -1 311 1 253 295 51 0 chr1 22232557 22232635 -259961029 - MIR SINE MIR -61 147 66 2462 88 3 0 chr1 22232980 22233287 -259960377 + AluSg SINE Alu 1 308 -2 695 270 100 46 chr1 22233491 22233880 -259959784 - L2 LINE L2 -6 3307 2898 814 163 0 0 chr1 22234026 22234149 -259959515 + FRAM SINE Alu 40 162 -14 370 288 174 0 chr1 22234215 22234347 -259959317 + MIR3 SINE MIR 36 190 -18 2475 93 0 6 chr1 22234546 22234859 -259958805 + AluSx SINE Alu 1 311 -1 1557 114 9 22 chr1 22235675 22235903 -259957761 + AluJb SINE Alu 78 302 -10 2460 81 0 13 chr1 22235903 22236201 -259957463 + AluSq SINE Alu 1 294 -19 616 196 27 34 chr1 22236360 22236508 -259957156 + MER5A DNA MER1_type 3 149 -40 518 149 9 28 chr1 22236508 22236615 -259957049 + FLAM_A SINE Alu 34 138 -4 2025 161 0 3 chr1 22236797 22237102 -259956562 - AluJb SINE Alu -8 304 1 2202 90 31 7 chr1 22237207 22237496 -259956168 + AluY SINE Alu 1 296 -15 360 323 31 0 chr1 22237550 22237677 -259955987 + MIR SINE MIR 118 248 -14 240 135 0 0 chr1 22238086 22238123 -259955541 + MSTD LTR MaLR 1 37 -391 935 189 112 103 chr1 22238197 22238546 -259955118 + MSTD LTR MaLR 45 396 0 * 1568 179 90 24 chr1 22238546 22238879 -259954785 - MLT1A2 LTR MaLR -16 358 4 951 262 124 32 chr1 22238904 22239372 -259954292 - L2 LINE L2 -47 3266 2779 2221 92 7 0 chr1 22239374 22239737 -259953927 + AluSg SINE Alu 1 365 0 576 294 21 0 chr1 22239865 22240052 -259953612 - MIR SINE MIR -6 256 66 2093 155 7 0 chr1 22240539 22240849 -259952815 + AluSx SINE Alu 1 312 0 1594 192 43 7 chr1 22241911 22242192 -259951472 + AluJo SINE Alu 1 291 -21 387 105 0 0 chr1 22242192 22242249 -259951415 + (GGGGA)n Simple_repeat Simple_repeat 1 57 0 299 261 22 92 chr1 22242274 22242458 -259951206 - MLT1J LTR MaLR -50 461 291 2240 120 7 0 chr1 22242483 22242784 -259950880 - AluSg SINE Alu -7 303 1 883 312 66 27 chr1 22243295 22243779 -259949885 - MLT1J LTR MaLR -8 503 1 202 217 0 17 chr1 22244103 22244163 -259949501 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 1700 152 62 42 chr1 22244256 22244612 -259949052 - MLT1A1 LTR MaLR 0 365 3 340 256 32 96 chr1 22245181 22245306 -259948358 - L2 LINE L2 0 3313 3197 2546 61 0 3 chr1 22245442 22245738 -259947926 + AluY SINE Alu 1 295 -16 1091 139 13 0 chr1 22245752 22245910 -259947754 + FRAM SINE Alu 9 168 -8 1169 88 0 0 chr1 22246264 22246411 -259947253 + AluYa5 SINE Alu 147 293 -18 408 232 77 88 chr1 22246413 22246594 -259947070 - MIR3 SINE MIR -29 179 1 221 273 133 49 chr1 22248241 22248384 -259945280 + MIR3 SINE MIR 2 156 -52 306 0 0 0 chr1 22248458 22248492 -259945172 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 2012 134 0 0 chr1 22248499 22248774 -259944890 - AluSx SINE Alu -37 275 1 620 244 49 49 chr1 22248840 22249065 -259944599 + MIR SINE MIR 37 262 0 2560 48 0 7 chr1 22249267 22249561 -259944103 + AluY SINE Alu 1 292 -19 190 290 16 16 chr1 22249590 22249652 -259944012 - L2 LINE L2 -493 2821 2760 201 297 161 25 chr1 22249701 22249819 -259943845 + L2 LINE L2 3179 3312 -1 210 118 0 0 chr1 22250107 22250141 -259943523 + (TTGG)n Simple_repeat Simple_repeat 1 34 0 498 203 85 8 chr1 22250147 22250265 -259943399 + L2 LINE L2 3182 3308 -5 236 268 56 0 chr1 22250253 22250324 -259943340 + MIR SINE MIR 172 246 -16 * 183 42 0 0 chr1 22250329 22250353 -259943311 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2304 102 3 0 chr1 22250355 22250649 -259943015 - AluSg SINE Alu -1 309 15 309 284 59 18 chr1 22250848 22251003 -259942661 - MIR SINE MIR -54 208 50 1844 192 0 0 chr1 22251023 22251325 -259942339 + AluJo SINE Alu 2 303 -9 2227 101 0 0 chr1 22251441 22251743 -259941921 - AluSc SINE Alu 0 302 1 194 125 0 0 chr1 22251891 22251923 -259941741 + L2 LINE L2 2916 2947 -325 2108 138 3 3 chr1 22251923 22252227 -259941437 - AluSx SINE Alu -8 304 1 1540 174 91 46 chr1 22252353 22252744 -259940920 + LTR7 LTR ERV1 1 414 -36 2261 71 60 0 chr1 22252744 22253027 -259940637 + AluSg SINE Alu 1 300 -10 1540 174 91 46 chr1 22253027 22253066 -259940598 + LTR7 LTR ERV1 414 450 0 344 278 0 11 chr1 22253069 22253159 -259940505 + MIR SINE MIR 170 258 -4 181 303 11 22 chr1 22253160 22253249 -259940415 + L2 LINE L2 2992 3079 -193 2276 104 0 3 chr1 22253271 22253569 -259940095 - AluSq SINE Alu -16 297 1 605 289 85 82 chr1 22254141 22254408 -259939256 - L2 LINE L2 0 3313 3048 1118 199 9 5 chr1 22254408 22254629 -259939035 + MER58A DNA MER1_type 3 224 0 605 289 85 82 chr1 22254629 22254928 -259938736 - L2 LINE L2 -265 3048 2739 2420 72 0 3 chr1 22254932 22255225 -259938439 - AluSg SINE Alu -18 292 1 344 148 0 0 chr1 22255225 22255286 -259938378 + L1MB3 LINE L1 6113 6173 -10 843 106 8 8 chr1 22255418 22255550 -259938114 + FLAM_C SINE Alu 2 133 0 1823 171 3 0 chr1 22255788 22256074 -259937590 + AluJb SINE Alu 5 291 -21 338 284 53 38 chr1 22256078 22256278 -259937386 - MIR SINE MIR -58 204 3 182 242 45 61 chr1 22257216 22257282 -259936382 - MIR SINE MIR -65 143 79 397 188 0 12 chr1 22257340 22257420 -259936244 + MIR SINE MIR 102 180 -82 2604 84 0 40 chr1 22257444 22257748 -259935916 + THE1B LTR MaLR 1 290 -74 2061 109 0 7 chr1 22257748 22258062 -259935602 - AluSx SINE Alu 0 312 1 2604 84 0 40 chr1 22258062 22258135 -259935529 + THE1B LTR MaLR 290 364 0 448 241 197 31 chr1 22258293 22258507 -259935157 - MIR SINE MIR -24 238 3 269 327 147 5 chr1 22259303 22259491 -259934173 - MIR SINE MIR -27 235 24 552 315 25 15 chr1 22259501 22259698 -259933966 - MIR SINE MIR -24 238 40 2337 97 0 3 chr1 22259698 22259998 -259933666 + AluSx SINE Alu 1 299 -13 2104 121 0 0 chr1 22260630 22260938 -259932726 - AluSg SINE Alu 0 308 1 1187 194 6 118 chr1 22260964 22261294 -259932370 + AluJo SINE Alu 1 293 -9 2182 119 0 26 chr1 22261296 22261608 -259932056 + AluSq SINE Alu 1 304 -9 2336 110 0 0 chr1 22261724 22262025 -259931639 - AluSx SINE Alu -11 301 1 2582 74 0 0 chr1 22262043 22262352 -259931312 - AluY SINE Alu -2 309 1 254 290 226 7 chr1 22262352 22262507 -259931157 - L2 LINE L2 -6 3307 3119 1944 156 0 46 chr1 22262541 22262678 -259930986 + AluJb SINE Alu 1 143 -169 2248 97 4 0 chr1 22262678 22262978 -259930686 + AluSg SINE Alu 1 301 0 1944 156 0 46 chr1 22262978 22263165 -259930499 + AluJb SINE Alu 143 312 0 2629 61 3 0 chr1 22263541 22263851 -259929813 - AluSp SINE Alu -2 311 1 2232 129 0 7 chr1 22263972 22264282 -259929382 + AluSx SINE Alu 1 308 -4 1469 244 106 8 chr1 22264322 22264808 -259928856 - MLT1F1 LTR MaLR -3 564 33 855 195 17 29 chr1 22265012 22265026 -259928638 + AluJo SINE Alu 119 132 -180 738 173 0 23 chr1 22265026 22265159 -259928505 + FLAM_C SINE Alu 1 130 -3 855 195 17 29 chr1 22265159 22265176 -259928488 + AluJo SINE Alu 132 148 -164 3828 139 48 29 chr1 22265176 22265890 -259927774 - LTR8A LTR ERV1 0 727 1 855 195 17 29 chr1 22265890 22266031 -259927633 + AluJo SINE Alu 148 290 -22 1440 44 0 0 chr1 22266031 22266039 -259927625 + (GGAA)n Simple_repeat Simple_repeat 1 188 0 1440 44 0 0 chr1 22266039 22266219 -259927445 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 553 136 8 8 chr1 22266453 22266571 -259927093 + GA-rich Low_complexity Low_complexity 3 120 0 299 286 11 60 chr1 22266574 22266756 -259926908 + HAL1 LINE L1 2333 2505 -2 713 135 8 38 chr1 22266783 22266916 -259926748 + FLAM_C SINE Alu 15 143 0 346 217 35 25 chr1 22267221 22267368 -259926296 - L2 LINE L2 -43 3229 3026 3601 98 3 64 chr1 22268241 22268852 -259924812 + MER4B LTR ERV1 1 574 -36 275 106 0 0 chr1 22269106 22269153 -259924511 + L1MA3 LINE L1 6254 6300 -5 2439 101 0 0 chr1 22269174 22269480 -259924184 + AluSp SINE Alu 1 306 -7 2474 82 8 8 chr1 22269506 22269861 -259923803 - THE1A LTR MaLR 0 355 1 1507 188 44 4 chr1 22269909 22270209 -259923455 + AluJo SINE Alu 1 311 0 2862 199 82 66 chr1 22270887 22271768 -259921896 - MER4D LTR ERV1 -8 895 1 1534 141 38 62 chr1 22271798 22272088 -259921576 - AluJo SINE Alu -21 291 9 23 0 0 0 chr1 22272239 22272262 -259921402 + AT_rich Low_complexity Low_complexity 1 23 0 1339 165 84 60 chr1 22272426 22272477 -259921187 + LTR47A LTR ERVL 2 50 -402 2081 138 16 3 chr1 22272477 22272781 -259920883 - AluSx SINE Alu -4 308 1 1339 165 84 60 chr1 22272781 22273063 -259920601 + LTR47A LTR ERVL 50 343 -109 217 307 53 13 chr1 22273246 22273321 -259920343 + MIR SINE MIR 66 143 -65 231 335 104 9 chr1 22273418 22273597 -259920067 + MIR SINE MIR 38 235 -27 22 0 0 0 chr1 22273764 22273786 -259919878 + GC_rich Low_complexity Low_complexity 1 22 0 228 172 0 35 chr1 22273834 22273892 -259919772 + (CGG)n Simple_repeat Simple_repeat 1 56 0 25 0 0 0 chr1 22273989 22274014 -259919650 + GC_rich Low_complexity Low_complexity 1 25 0 288 242 168 54 chr1 22274586 22274735 -259918929 - MIR SINE MIR -82 180 15 761 231 60 28 chr1 22274912 22275128 -259918536 - MLT2D LTR ERVL 0 414 192 392 262 78 14 chr1 22275155 22275296 -259918368 - MIR3 SINE MIR -51 157 8 2291 86 0 0 chr1 22275569 22275848 -259917816 + AluSg SINE Alu 1 279 -31 2603 64 0 3 chr1 22275915 22276227 -259917437 + AluY SINE Alu 1 311 0 1596 204 0 0 chr1 22276233 22276497 -259917167 + AluJo SINE Alu 1 264 -48 236 132 61 26 chr1 22276532 22276646 -259917018 + (TA)n Simple_repeat Simple_repeat 1 118 0 2244 98 10 7 chr1 22276693 22276990 -259916674 - AluSg SINE Alu -12 298 1 1806 155 32 36 chr1 22278707 22279016 -259914648 + AluJb SINE Alu 1 308 -4 488 245 0 0 chr1 22279025 22279131 -259914533 - MER5A DNA MER1_type -80 109 4 225 309 154 18 chr1 22280351 22280461 -259913203 + L2 LINE L2 3137 3261 -11 217 301 61 49 chr1 22280834 22280997 -259912667 - L2 LINE L2 -174 3098 2934 1912 118 7 15 chr1 22281116 22281388 -259912276 + AluJb SINE Alu 13 282 -30 189 278 61 26 chr1 22282046 22282161 -259911503 + L2 LINE L2 2799 2917 -397 347 232 107 47 chr1 22282559 22282768 -259910896 - LTR45 LTR ERV1 0 525 264 2049 125 3 3 chr1 22283016 22283304 -259910360 - AluJb SINE Alu -13 299 12 392 277 45 0 chr1 22283770 22283882 -259909782 - L2 LINE L2 0 3272 3156 431 274 44 30 chr1 22283899 22284034 -259909630 + L2 LINE L2 3134 3270 -2 1673 109 68 48 chr1 22284178 22284489 -259909175 - MER44D DNA MER2_type -22 587 1 238 200 0 0 chr1 22284509 22284554 -259909110 - MIR SINE MIR -188 74 30 281 183 0 14 chr1 22284579 22284650 -259909014 + (TGGA)n Simple_repeat Simple_repeat 2 71 0 227 313 15 0 chr1 22284672 22284739 -259908925 + L2 LINE L2 3246 3313 0 2329 104 3 0 chr1 22285555 22285853 -259907811 + AluSx SINE Alu 1 299 -13 1758 150 6 72 chr1 22286340 22286674 -259906990 + AluJo SINE Alu 1 312 0 529 251 27 114 chr1 22286674 22286712 -259906952 + L3 LINE CR1 1346 1386 -191 2399 84 0 0 chr1 22286712 22286999 -259906665 + AluSc SINE Alu 1 287 -22 529 251 27 114 chr1 22286999 22287179 -259906485 + L3 LINE CR1 1386 1545 -32 1957 127 25 0 chr1 22287204 22287395 -259906269 - AluSx SINE Alu 0 324 121 2335 74 0 3 chr1 22287395 22287680 -259905984 - AluY SINE Alu -2 309 26 1957 127 25 0 chr1 22287680 22287805 -259905859 - AluSx SINE Alu -203 121 1 2514 83 0 0 chr1 22287815 22288117 -259905547 - AluSg SINE Alu -8 302 1 1820 115 63 17 chr1 22288169 22288456 -259905208 - AluSx SINE Alu -11 301 2 2212 138 0 0 chr1 22289831 22290135 -259903529 + AluSx SINE Alu 1 304 -8 2180 88 0 3 chr1 22292164 22292475 -259901189 - AluY SINE Alu 0 310 1 2091 126 3 0 chr1 22295210 22295511 -259898153 - AluSx SINE Alu -10 302 1 777 153 23 8 chr1 22295527 22295658 -259898006 - FLAM_C SINE Alu 0 133 1 802 297 169 5 chr1 22297348 22297974 -259895690 - L2 LINE L2 -188 3125 2395 875 198 94 15 chr1 22298231 22298433 -259895231 + MER20 DNA MER1_type 1 218 -1 1654 200 87 78 chr1 22298805 22299192 -259894472 - MER113 DNA MER1_type? 0 521 126 1931 147 3 10 chr1 22299192 22299506 -259894158 - AluJo SINE Alu 0 312 1 1654 200 87 78 chr1 22299506 22299634 -259894030 - MER113 DNA MER1_type? -395 126 1 909 128 7 0 chr1 22300137 22300278 -259893386 + AluJb SINE Alu 163 304 -8 402 307 115 74 chr1 22300362 22300824 -259892840 + L3 LINE CR1 1097 1577 0 2012 98 20 14 chr1 22303293 22303590 -259890074 + AluSx SINE Alu 1 299 -13 437 213 169 15 chr1 22303782 22303918 -259889746 - MIR SINE MIR -20 242 86 462 240 66 8 chr1 22305361 22305482 -259888182 + MIR SINE MIR 23 150 -112 1114 162 0 0 chr1 22305560 22305739 -259887925 - AluSg/x SINE Alu 0 310 132 2202 114 0 3 chr1 22305739 22306047 -259887617 - AluSx SINE Alu -5 307 1 295 197 15 0 chr1 22306396 22306470 -259887194 - MIR SINE MIR -59 149 97 474 292 0 15 chr1 22307251 22307381 -259886283 + MLT1K LTR MaLR 122 249 -339 3751 107 4 13 chr1 22307415 22307949 -259885715 + MER1A DNA MER1_type 1 529 0 422 227 133 94 chr1 22307990 22308072 -259885592 + MLT1K LTR MaLR 338 415 -173 2235 93 0 7 chr1 22308072 22308372 -259885292 + AluSp SINE Alu 1 298 -15 2428 64 0 0 chr1 22308375 22308671 -259884993 + AluY SINE Alu 1 296 -15 422 227 133 94 chr1 22308671 22308787 -259884877 + MLT1K LTR MaLR 416 548 -40 1190 213 43 0 chr1 22309049 22309260 -259884404 + MER58A DNA MER1_type 4 223 -1 2248 67 3 0 chr1 22309602 22309935 -259883729 + AluY SINE Alu 1 334 0 2301 82 20 0 chr1 22309941 22310244 -259883420 + AluSc SINE Alu 1 309 0 343 279 116 8 chr1 22311309 22311438 -259882226 - MIR3 SINE MIR -21 187 45 245 205 189 47 chr1 22311448 22311575 -259882089 + MIR SINE MIR 43 187 -75 540 210 121 94 chr1 22311596 22311674 -259881990 - MIR SINE MIR -1 261 187 1941 135 0 29 chr1 22311674 22311985 -259881679 - AluJb SINE Alu -10 302 1 540 210 121 94 chr1 22311985 22312130 -259881534 - MIR SINE MIR -75 187 32 252 77 0 0 chr1 22312685 22312724 -259880940 + (TCCA)n Simple_repeat Simple_repeat 1 39 0 1839 113 46 7 chr1 22313293 22313606 -259880058 + AluSx SINE Alu 1 312 0 243 0 0 0 chr1 22313728 22313755 -259879909 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 681 188 8 8 chr1 22313759 22313876 -259879788 - FLAM_C SINE Alu -25 118 2 1982 115 17 3 chr1 22313884 22314179 -259879485 - AluSx SINE Alu -13 299 1 1756 180 0 0 chr1 22314273 22314578 -259879086 - AluJo SINE Alu -6 306 2 1461 151 11 22 chr1 22314639 22314910 -259878754 - AluJb SINE Alu -39 273 6 3160 191 12 40 chr1 22314911 22315218 -259878446 - L1M4 LINE L1 -1002 5144 4830 2267 94 0 3 chr1 22315218 22315515 -259878149 + AluSx SINE Alu 1 296 -16 2333 74 0 3 chr1 22315516 22315814 -259877850 + AluY SINE Alu 1 297 -14 3160 191 12 40 chr1 22315814 22316238 -259877426 - L1M4 LINE L1 -1315 4831 4431 1073 127 73 0 chr1 22316242 22316407 -259877257 + AluSg/x SINE Alu 133 309 -1 1828 250 56 67 chr1 22316499 22316900 -259876764 + L1MC4a LINE L1 4997 5401 -745 2123 115 3 3 chr1 22316900 22317224 -259876440 + AluSx SINE Alu 2 312 0 1828 250 56 67 chr1 22317224 22317279 -259876385 + L1MC4a LINE L1 5401 5455 -691 2098 134 0 0 chr1 22317279 22317578 -259876086 + AluJb SINE Alu 1 299 -13 1828 250 56 67 chr1 22317578 22317922 -259875742 + L1MC4a LINE L1 5455 5111 -1035 2132 107 0 7 chr1 22317922 22318221 -259875443 + AluSx SINE Alu 1 297 -15 1828 250 56 67 chr1 22318221 22318331 -259875333 + L1MC4a LINE L1 5110 5220 -926 2276 129 30 28 chr1 22318358 22318721 -259874943 - THE1B LTR MaLR 0 364 1 30 0 0 0 chr1 22318757 22318787 -259874877 + AT_rich Low_complexity Low_complexity 1 30 0 1295 147 34 0 chr1 22319380 22319584 -259874080 + AluJb SINE Alu 1 211 -101 1644 104 0 36 chr1 22319608 22319857 -259873807 + AluJo SINE Alu 70 309 -3 1661 243 22 19 chr1 22319912 22320328 -259873336 + MLT1E2 LTR MaLR 207 623 -3 854 215 0 0 chr1 22320350 22320499 -259873165 - AluSg/x SINE Alu -27 285 137 978 193 25 0 chr1 22320781 22320942 -259872722 + FRAM SINE Alu 1 165 -1 2360 73 0 19 chr1 22321192 22321507 -259872157 + AluY SINE Alu 1 309 -2 2034 95 3 11 chr1 22321532 22321842 -259871822 - AluSx SINE Alu 0 308 1 259 264 0 110 chr1 22322236 22322327 -259871337 + L1ME3A LINE L1 6052 6132 -38 332 219 32 0 chr1 22322442 22322565 -259871099 + (CA)n Simple_repeat Simple_repeat 2 128 0 282 339 18 9 chr1 22322565 22322674 -259870990 + L2 LINE L2 3189 3298 -15 1055 155 80 5 chr1 22322675 22322875 -259870789 + AluJb SINE Alu 85 299 -13 229 314 0 0 chr1 22323335 22323405 -259870259 - MIR3 SINE MIR -54 154 85 2283 109 0 0 chr1 22323723 22324027 -259869637 + AluSx SINE Alu 1 304 -8 182 333 14 0 chr1 22324152 22324221 -259869443 + L2 LINE L2 2898 2967 -305 420 275 41 56 chr1 22324299 22324541 -259869123 - MIR SINE MIR -3 259 24 224 274 27 0 chr1 22324702 22324775 -259868889 - MIR SINE MIR -115 147 73 216 275 193 15 chr1 22325582 22325923 -259867741 + L2 LINE L2 2637 3066 -247 209 267 0 0 chr1 22326275 22326320 -259867344 - MIR SINE MIR -110 152 108 244 118 294 15 chr1 22326740 22326808 -259866856 - MIR SINE MIR -62 146 60 287 65 22 0 chr1 22326823 22326869 -259866795 + (CA)n Simple_repeat Simple_repeat 2 48 0 2167 100 0 17 chr1 22326911 22327211 -259866453 - AluSx SINE Alu -17 295 1 2383 70 0 10 chr1 22328385 22328699 -259864965 - AluY SINE Alu 0 311 1 196 37 0 0 chr1 22328822 22328849 -259864815 + L2 LINE L2 3028 3054 -218 240 325 102 30 chr1 22329394 22329560 -259864104 + MIR SINE MIR 70 247 -15 2012 140 0 28 chr1 22329719 22330040 -259863624 + AluSx SINE Alu 1 312 0 979 205 11 0 chr1 22330244 22330429 -259863235 + MIR SINE MIR 2 188 -74 1645 145 3 85 chr1 22330869 22331041 -259862623 - AluJo SINE Alu -8 304 120 2430 54 0 3 chr1 22331041 22331337 -259862327 - AluY SINE Alu -16 295 1 1645 145 3 85 chr1 22331337 22331369 -259862295 - AluJo SINE Alu -192 120 87 1970 122 30 0 chr1 22331369 22331672 -259861992 + AluSx SINE Alu 1 312 0 1645 145 3 85 chr1 22331672 22331797 -259861867 - AluJo SINE Alu -225 87 1 2069 99 0 48 chr1 22331806 22332119 -259861545 - AluSq SINE Alu -15 298 1 314 283 81 20 chr1 22332129 22332228 -259861436 - L1ME4a LINE L1 -187 5934 5830 288 333 45 40 chr1 22332584 22332692 -259860972 + L2 LINE L2 3001 3112 -201 1272 155 182 35 chr1 22332692 22332950 -259860714 - AluSg SINE Alu -3 297 2 288 333 45 40 chr1 22332950 22333042 -259860622 + L2 LINE L2 3112 3202 -111 2255 103 0 0 chr1 22333121 22333422 -259860242 - AluSg SINE Alu -9 301 1 1695 137 3 68 chr1 22333595 22333916 -259859748 - AluJo SINE Alu -12 300 1 1549 104 0 5 chr1 22334454 22334665 -259858999 - AluSg/x SINE Alu -18 292 83 225 346 78 0 chr1 22335166 22335319 -259858345 + L2 LINE L2 975 1139 -2175 510 248 0 0 chr1 22335342 22335499 -259858165 + (CA)n Simple_repeat Simple_repeat 2 158 0 2245 99 0 3 chr1 22335527 22335839 -259857825 - AluSx SINE Alu -1 311 1 485 252 13 19 chr1 22336069 22336228 -259857436 + L2 LINE L2 1584 1741 -1573 181 254 63 0 chr1 22336216 22336279 -259857385 + L2 LINE L2 3206 3272 0 * 389 233 33 42 chr1 22336345 22336465 -259857199 - MIR SINE MIR -71 191 73 193 206 59 44 chr1 22336466 22336534 -259857130 - MIR3 SINE MIR -13 195 127 190 231 0 0 chr1 22336620 22336659 -259857005 + L2 LINE L2 3258 3296 -17 1729 153 14 4 chr1 22337676 22337988 -259855676 + AluJo SINE Alu 1 315 0 391 269 48 0 chr1 22338505 22338609 -259855055 + MIR SINE MIR 24 132 -76 308 276 149 15 chr1 22338989 22339123 -259854541 - L2 LINE L2 -2 3311 3160 1868 165 3 0 chr1 22339296 22339599 -259854065 - AluJo SINE Alu -8 304 1 1966 114 0 29 chr1 22339625 22339933 -259853731 + AluSx SINE Alu 1 299 -13 1061 299 91 25 chr1 22339997 22340413 -259853251 - L2 LINE L2 -271 3001 2516 1970 102 7 7 chr1 22340413 22340721 -259852943 - AluSx SINE Alu 0 308 1 1061 299 91 25 chr1 22340721 22340940 -259852724 - L2 LINE L2 -756 2516 2313 1424 268 44 19 chr1 22340977 22341454 -259852210 + MER74B LTR ERVL 66 554 -68 2189 96 7 0 chr1 22341502 22341804 -259851860 + AluY SINE Alu 1 304 -7 578 343 108 10 chr1 22341812 22342310 -259851354 - L2 LINE L2 -1058 2256 1710 351 295 20 74 chr1 22342424 22342573 -259851091 - MIR SINE MIR -33 229 89 354 311 31 97 chr1 22343058 22343347 -259850317 + L2 LINE L2 3000 3269 -3 517 217 6 22 chr1 22343376 22343694 -259849970 + (TGGA)n Simple_repeat Simple_repeat 1 312 0 811 159 0 11 chr1 22343733 22343915 -259849749 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 203 294 0 0 chr1 22343915 22343966 -259849698 + (TGGG)n Simple_repeat Simple_repeat 2 52 0 183 288 0 0 chr1 22343975 22344041 -259849623 + (TGGA)n Simple_repeat Simple_repeat 1 66 0 1023 75 0 0 chr1 22344162 22344296 -259849368 + AluY SINE Alu 163 296 -15 624 284 23 28 chr1 22345295 22345513 -259848151 - MIR SINE MIR -13 249 33 200 329 57 36 chr1 22345668 22345808 -259847856 + MIR SINE MIR 31 145 -63 1785 170 182 30 chr1 22345808 22346243 -259847421 + LTR64 LTR ERVK 1 501 -57 2036 123 10 10 chr1 22346244 22346554 -259847110 - AluJo SINE Alu 0 312 3 2178 96 0 0 chr1 22346659 22346960 -259846704 + AluSx SINE Alu 1 301 0 1798 175 19 10 chr1 22346960 22347269 -259846395 + AluJb SINE Alu 1 312 0 965 158 0 34 chr1 22347277 22347454 -259846210 + AluJo SINE Alu 118 288 -24 449 351 16 5 chr1 22347465 22347653 -259846011 + L1ME LINE L1 5548 5737 -384 1763 144 44 3 chr1 22347843 22348132 -259845532 + AluJo SINE Alu 1 304 -8 474 18 0 0 chr1 22348132 22348187 -259845477 + (TG)n Simple_repeat Simple_repeat 2 56 0 239 122 20 0 chr1 22348195 22348244 -259845420 + (TA)n Simple_repeat Simple_repeat 1 50 0 31 26 0 0 chr1 22348247 22348285 -259845379 + AT_rich Low_complexity Low_complexity 1 38 0 774 171 0 16 chr1 22348688 22348817 -259844847 - AluJb SINE Alu -58 254 128 653 242 35 32 chr1 22348947 22349180 -259844484 + MIR SINE MIR 20 256 -6 618 214 184 30 chr1 22349293 22349459 -259844205 + MIR SINE MIR 25 229 -33 1763 150 41 0 chr1 22349459 22349753 -259843911 + AluJb SINE Alu 1 306 -6 618 214 184 30 chr1 22349753 22349787 -259843877 + MIR SINE MIR 229 256 -6 481 302 82 0 chr1 22350364 22350546 -259843118 + MIR SINE MIR 65 261 -1 406 274 131 24 chr1 22351401 22351569 -259842095 + MIR SINE MIR 60 245 -17 501 260 58 35 chr1 22352132 22352305 -259841359 + MIR SINE MIR 16 192 -70 540 186 35 35 chr1 22352764 22352877 -259840787 + FLAM_A SINE Alu 1 113 -29 425 293 72 67 chr1 22352888 22353360 -259840304 - L1MC5 LINE L1 -30 8211 7743 2049 124 0 0 chr1 22353360 22353643 -259840021 - AluSx SINE Alu -26 286 4 425 293 72 67 chr1 22353643 22353664 -259840000 - L1MC5 LINE L1 -498 7743 1853 231 58 19 39 chr1 22354205 22354257 -259839407 + (CAAAA)n Simple_repeat Simple_repeat 2 52 0 2077 97 0 35 chr1 22354257 22354396 -259839268 + AluSx SINE Alu 5 147 -165 2369 71 0 0 chr1 22354396 22354691 -259838973 + AluY SINE Alu 1 295 -16 2077 97 0 35 chr1 22354691 22354870 -259838794 + AluSx SINE Alu 147 312 0 2161 119 0 0 chr1 22354871 22355166 -259838498 + AluSx SINE Alu 7 301 -11 295 339 65 0 chr1 22355424 22355548 -259838116 + MIR SINE MIR 117 248 -14 189 250 57 34 chr1 22356191 22356279 -259837385 + MIR SINE MIR 15 104 -158 2113 98 20 3 chr1 22356315 22356612 -259837052 + AluSx SINE Alu 1 302 -10 205 282 28 0 chr1 22356935 22357006 -259836658 - L2 LINE L2 -279 2993 2921 378 183 14 0 chr1 22357139 22357210 -259836454 - L2 LINE L2 -43 3229 3158 1599 58 53 0 chr1 22357408 22357615 -259836049 + AluSq SINE Alu 1 218 -95 224 233 0 27 chr1 22358130 22358203 -259835461 + G-rich Low_complexity Low_complexity 3 73 0 1897 96 100 4 chr1 22358858 22359138 -259834526 + AluSq SINE Alu 1 307 -6 202 333 0 0 chr1 22359252 22359303 -259834361 - L2 LINE L2 -23 3290 3240 1304 151 196 8 chr1 22359414 22359659 -259834005 - AluJo SINE Alu -11 291 1 204 162 68 68 chr1 22362635 22362709 -259830955 + MIR3 SINE MIR 81 154 -54 884 186 0 23 chr1 22363381 22363553 -259830111 + FRAM SINE Alu 1 165 -11 426 312 0 0 chr1 22363717 22363858 -259829806 - MIR SINE MIR -37 225 85 221 329 53 0 chr1 22365176 22365252 -259828412 - L2 LINE L2 -1 3271 3192 514 238 16 25 chr1 22365318 22365440 -259828224 + MIR SINE MIR 13 133 -129 185 250 31 16 chr1 22365602 22365666 -259827998 + L2 LINE L2 3197 3261 -11 276 270 90 0 chr1 22365927 22366027 -259827637 - L2 LINE L2 -244 3028 2920 295 304 53 12 chr1 22366624 22366795 -259826869 + MIR SINE MIR 9 186 -76 238 236 19 57 chr1 22368058 22368164 -259825500 + MIR SINE MIR 32 133 -129 312 290 131 62 chr1 22368502 22368792 -259824872 - L2 LINE L2 -3 3310 3001 295 234 189 9 chr1 22369697 22369803 -259823861 + MIR SINE MIR 27 150 -68 205 360 0 24 chr1 22370512 22370637 -259823027 + G-rich Low_complexity Low_complexity 3 124 0 367 191 38 92 chr1 22371326 22371457 -259822207 - MIR3 SINE MIR -78 130 7 294 242 56 10 chr1 22371676 22371807 -259821857 + MIR SINE MIR 33 172 -62 280 247 27 33 chr1 22372318 22372468 -259821196 + C-rich Low_complexity Low_complexity 2 150 0 360 338 82 34 chr1 22373494 22373701 -259819963 + MIR SINE MIR 46 262 0 229 188 0 21 chr1 22373753 22373801 -259819863 - Alu SINE Alu -13 289 243 324 153 17 35 chr1 22373811 22373904 -259819760 - Alu SINE Alu -17 285 243 1061 145 24 58 chr1 22373918 22374125 -259819539 - AluJb SINE Alu -27 285 86 211 234 16 47 chr1 22374619 22374683 -259818981 - L2 LINE L2 -39 3274 3213 2317 87 3 0 chr1 22374699 22374998 -259818666 + AluSq SINE Alu 1 300 -13 2195 44 4 7 chr1 22375168 22375443 -259818221 + AluY SINE Alu 1 274 -37 1657 138 63 0 chr1 22375443 22375711 -259817953 - AluSx SINE Alu -26 286 1 2455 62 3 0 chr1 22376584 22376888 -259816776 + AluSp SINE Alu 1 305 -8 1297 194 74 7 chr1 22376895 22377178 -259816486 + AluJo SINE Alu 3 304 -8 1753 148 44 75 chr1 22377199 22377584 -259816080 + MLT1B LTR MaLR 18 390 0 726 168 24 8 chr1 22377605 22377730 -259815934 + FLAM_A SINE Alu 1 127 -6 372 176 157 10 chr1 22377830 22377932 -259815732 - MIR3 SINE MIR -15 193 77 374 215 13 0 chr1 22379281 22379360 -259814304 - MIR SINE MIR -120 142 63 1998 135 3 0 chr1 22380191 22380488 -259813176 + AluSx SINE Alu 1 298 -14 1399 207 23 10 chr1 22380888 22381188 -259812476 + AluJo SINE Alu 1 304 -8 236 326 61 20 chr1 22382397 22382495 -259811169 - L3 LINE CR1 -9 1568 1467 23 0 0 0 chr1 22383688 22383711 -259809953 + AT_rich Low_complexity Low_complexity 1 23 0 1975 129 10 3 chr1 22383731 22384040 -259809624 + AluY SINE Alu 1 311 0 2028 97 17 7 chr1 22384135 22384452 -259809212 + AluSx SINE Alu 1 312 0 285 272 0 12 chr1 22386253 22386334 -259807330 - L2 LINE L2 -2 3311 3232 369 0 0 0 chr1 22386536 22386577 -259807087 + (TG)n Simple_repeat Simple_repeat 2 42 0 749 208 0 0 chr1 22386577 22386707 -259806957 - FLAM_A SINE Alu -3 130 1 194 286 0 39 chr1 22386903 22386980 -259806684 + L2 LINE L2 3240 3313 0 1724 159 11 3 chr1 22387098 22387381 -259806283 + AluJb SINE Alu 16 300 -12 1004 239 61 22 chr1 22387560 22387790 -259805874 - MER8 DNA MER2_type 0 239 1 183 80 0 0 chr1 22388198 22388223 -259805441 + (CATA)n Simple_repeat Simple_repeat 3 27 0 799 168 0 0 chr1 22388246 22388365 -259805299 - FLAM_C SINE Alu -23 120 2 266 290 20 20 chr1 22388369 22388469 -259805195 - MIR3 SINE MIR -20 188 89 2001 86 0 58 chr1 22388814 22389127 -259804537 + AluY SINE Alu 1 295 -16 2051 131 0 10 chr1 22389695 22390008 -259803656 - AluSg SINE Alu 0 310 1 1606 143 37 24 chr1 22390563 22390672 -259802992 + AluSx SINE Alu 15 121 -191 513 0 0 0 chr1 22390672 22390729 -259802935 + (CA)n Simple_repeat Simple_repeat 2 58 0 1606 143 37 24 chr1 22390729 22390913 -259802751 + AluSx SINE Alu 121 312 0 2358 153 32 43 chr1 22390965 22391157 -259802507 + Tigger2a DNA MER2_type 2 195 -2513 2055 133 3 0 chr1 22391157 22391466 -259802198 - AluSx SINE Alu -2 310 1 2358 153 32 43 chr1 22391466 22391711 -259801953 + Tigger2a DNA MER2_type 195 434 0 1433 211 10 10 chr1 22391796 22392104 -259801560 + AluJo SINE Alu 5 312 0 3716 209 40 26 chr1 22392226 22392328 -259801336 + Charlie1a DNA MER1_type 2 101 -2660 2042 92 34 7 chr1 22392328 22392621 -259801043 + AluSx SINE Alu 2 302 -10 3716 209 40 26 chr1 22392621 22392633 -259801031 + Charlie1a DNA MER1_type 101 111 -2650 2036 124 16 0 chr1 22392633 22392939 -259800725 - AluSx SINE Alu -1 311 1 3716 209 40 26 chr1 22392939 22393297 -259800367 + Charlie1a DNA MER1_type 111 463 -2298 2280 88 0 7 chr1 22393297 22393591 -259800073 - AluSg SINE Alu -18 292 1 3716 209 40 26 chr1 22393591 22394072 -259799592 + Charlie1a DNA MER1_type 463 970 -485 4623 209 89 26 chr1 22394072 22395380 -259798284 + L1MB7 LINE L1 3841 5230 -916 3008 175 121 30 chr1 22395419 22395635 -259798029 + L1MB7 LINE L1 5301 5496 -688 1865 165 0 23 chr1 22395635 22395938 -259797726 + AluJb SINE Alu 1 296 -16 3008 175 121 30 chr1 22395938 22396520 -259797144 + L1MB7 LINE L1 5496 6172 -12 877 173 127 25 chr1 22396520 22396757 -259796907 + Charlie1a DNA MER1_type 956 1216 -239 825 190 0 0 chr1 22396785 22396927 -259796737 + AluJb SINE Alu 149 290 -22 1065 134 13 92 chr1 22396950 22397058 -259796606 + Charlie1a DNA MER1_type 1236 1316 -1445 1922 141 30 10 chr1 22397058 22397357 -259796307 - AluSx SINE Alu -5 307 3 1065 134 13 92 chr1 22397357 22397486 -259796178 + Charlie1a DNA MER1_type 1316 1454 -1 2383 91 3 0 chr1 22397722 22398020 -259795644 - AluSp SINE Alu -14 299 1 2217 122 0 6 chr1 22398213 22398525 -259795139 + AluSg SINE Alu 1 310 0 235 275 121 33 chr1 22398609 22398700 -259794964 - MIR SINE MIR -10 252 154 2194 106 0 3 chr1 22398702 22398995 -259794669 - AluY SINE Alu -19 292 1 1812 160 3 26 chr1 22398995 22399302 -259794362 - AluJb SINE Alu -12 300 1 355 235 103 15 chr1 22399326 22399462 -259794202 + L1MC5 LINE L1 7526 7673 -288 2234 103 3 10 chr1 22399468 22399769 -259793895 + AluSp SINE Alu 1 299 -14 610 199 34 14 chr1 22399857 22400003 -259793661 + MLT1A1 LTR MaLR 169 317 -48 2475 249 76 62 chr1 22400022 22400230 -259793434 - L2 LINE L2 -252 3061 2857 2383 88 0 16 chr1 22400230 22400535 -259793129 - AluSg SINE Alu -10 300 1 2475 249 76 62 chr1 22400535 22400607 -259793057 - L2 LINE L2 -456 2857 2787 1529 220 3 10 chr1 22400607 22400903 -259792761 + AluJo SINE Alu 3 296 -16 2055 109 25 0 chr1 22400909 22401204 -259792460 + AluSx SINE Alu 1 302 0 2475 249 76 62 chr1 22401204 22401389 -259792275 - L2 LINE L2 -530 2783 2602 2073 127 20 7 chr1 22401389 22401689 -259791975 - AluSx SINE Alu -8 304 1 2475 249 76 62 chr1 22401689 22402413 -259791251 - L2 LINE L2 -711 2602 1787 243 163 0 0 chr1 22402815 22402858 -259790806 + MER4A LTR ERV1 1 43 -621 1891 134 26 19 chr1 22402908 22403260 -259790404 + MER4A LTR ERV1 252 664 0 1357 204 71 34 chr1 22403275 22403599 -259790065 + MSTB LTR MaLR 40 375 -51 226 143 0 36 chr1 22404209 22404265 -259789399 + (TA)n Simple_repeat Simple_repeat 2 55 0 345 82 0 8 chr1 22404266 22404320 -259789344 - Alu SINE Alu -14 287 245 301 79 0 0 chr1 22404304 22404342 -259789322 - Alu SINE Alu -264 38 1 * 1183 114 0 6 chr1 22404701 22404867 -259788797 - AluSq SINE Alu -20 293 129 1066 163 6 0 chr1 22405065 22405237 -259788427 + AluSq SINE Alu 122 294 -19 2196 125 6 0 chr1 22405237 22405548 -259788116 + AluSq SINE Alu 1 313 0 2143 117 20 0 chr1 22406039 22406339 -259787325 + AluSx SINE Alu 1 306 -6 2029 136 3 0 chr1 22406360 22406646 -259787018 + AluSp SINE Alu 1 287 -26 1852 154 0 17 chr1 22407006 22407330 -259786334 + AluSx SINE Alu 1 319 0 1972 117 17 7 chr1 22407387 22407677 -259785987 + AluSx SINE Alu 1 293 -19 226 300 110 50 chr1 22407719 22407819 -259785845 + MIR SINE MIR 18 123 -139 230 209 0 0 chr1 22407832 22407875 -259785789 + L2 LINE L2 3214 3256 -16 225 260 14 41 chr1 22408202 22408275 -259785389 + MIR SINE MIR 80 150 -112 2528 58 0 0 chr1 22408515 22408810 -259784854 + AluY SINE Alu 1 295 -16 1944 143 43 0 chr1 22408908 22409187 -259784477 + AluSx SINE Alu 1 291 -21 1354 143 76 90 chr1 22409443 22409626 -259784038 - AluJo SINE Alu -15 297 118 1891 168 7 0 chr1 22409626 22409935 -259783729 + AluJb SINE Alu 1 311 -1 1354 143 76 90 chr1 22409935 22410052 -259783612 - AluJo SINE Alu -194 118 1 190 296 239 0 chr1 22410303 22410445 -259783219 + MIR3 SINE MIR 33 208 0 1691 166 28 0 chr1 22410681 22410965 -259782699 - AluJo SINE Alu -20 292 1 34 65 0 0 chr1 22413558 22413620 -259780044 + AT_rich Low_complexity Low_complexity 1 62 0 244 308 99 44 chr1 22414275 22414457 -259779207 + MIR SINE MIR 2 193 -69 716 169 0 0 chr1 22414572 22414690 -259778974 + FLAM_C SINE Alu 1 118 -15 261 75 0 0 chr1 22414694 22414734 -259778930 + (CA)n Simple_repeat Simple_repeat 2 41 0 3121 147 48 19 chr1 22414845 22415053 -259778611 + Tigger3b DNA MER2_type 3 204 -2824 2260 89 0 30 chr1 22415053 22415357 -259778307 + AluSc SINE Alu 1 295 -14 3121 147 48 19 chr1 22415357 22415671 -259777993 + Tigger3b DNA MER2_type 204 540 -691 629 261 0 0 chr1 22415671 22415801 -259777863 - FLAM_A SINE Alu -12 130 1 2657 123 43 0 chr1 22415897 22416288 -259777376 + Tigger3b DNA MER2_type 823 1230 -1 33 0 0 0 chr1 22416361 22416394 -259777270 + AT_rich Low_complexity Low_complexity 1 33 0 207 152 0 0 chr1 22417628 22417674 -259775990 + A-rich Low_complexity Low_complexity 1 46 0 2264 104 0 3 chr1 22417800 22418109 -259775555 - AluY SINE Alu -3 308 1 232 256 0 49 chr1 22419040 22419122 -259774542 + MER117 DNA MER1_type 78 155 -42 2250 115 7 0 chr1 22419143 22419447 -259774217 - AluSx SINE Alu -6 306 1 259 247 22 22 chr1 22419540 22419629 -259774035 + A-rich Low_complexity Low_complexity 2 90 0 2356 90 3 0 chr1 22421984 22422283 -259771381 - AluSx SINE Alu -12 300 1 640 227 23 0 chr1 22422518 22422646 -259771018 + AluJo SINE Alu 6 136 -176 1704 167 16 22 chr1 22422659 22422970 -259770694 + AluJb SINE Alu 1 309 -3 2553 75 3 0 chr1 22422978 22423285 -259770379 + AluSg SINE Alu 1 308 -2 887 213 6 0 chr1 22423305 22423492 -259770172 + AluJo SINE Alu 118 305 0 2134 119 10 13 chr1 22423596 22423908 -259769756 + AluSx SINE Alu 1 311 -1 1130 95 0 0 chr1 22424005 22424152 -259769512 + AluSg/x SINE Alu 161 307 -5 1756 169 38 0 chr1 22424337 22424627 -259769037 - AluJb SINE Alu -11 301 1 375 262 10 19 chr1 22424702 22424805 -259768859 + L2 LINE L2 3212 3313 0 2518 56 7 0 chr1 22424827 22425133 -259768531 - AluY SINE Alu -3 308 1 1582 138 89 11 chr1 22425300 22425569 -259768095 - AluJb SINE Alu -22 290 1 21 0 0 0 chr1 22427045 22427066 -259766598 + GC_rich Low_complexity Low_complexity 1 21 0 282 243 28 42 chr1 22427574 22427718 -259765946 + C-rich Low_complexity Low_complexity 2 143 0 25 75 0 0 chr1 22427734 22427787 -259765877 + GC_rich Low_complexity Low_complexity 1 53 0 1561 142 43 25 chr1 22428892 22429173 -259764491 + AluJo SINE Alu 1 286 -26 1336 175 35 45 chr1 22429184 22429325 -259764339 + AluJb SINE Alu 5 146 -166 2180 92 20 7 chr1 22429325 22429619 -259764045 + AluY SINE Alu 1 298 -13 1336 175 35 45 chr1 22429619 22429763 -259763901 + AluJb SINE Alu 146 287 -25 2077 96 58 3 chr1 22429770 22430061 -259763603 + AluSg SINE Alu 1 307 -3 2069 138 3 0 chr1 22430065 22430376 -259763288 + AluSx SINE Alu 1 312 0 2288 105 0 0 chr1 22430738 22431034 -259762630 - AluSx SINE Alu -16 296 1 699 194 16 0 chr1 22431298 22431422 -259762242 - FLAM_A SINE Alu -7 126 1 2131 97 31 3 chr1 22431842 22432132 -259761532 - AluSx SINE Alu -8 304 7 25 0 0 0 chr1 22432340 22432365 -259761299 + AT_rich Low_complexity Low_complexity 1 25 0 1566 164 63 4 chr1 22432365 22432633 -259761031 - AluJo SINE Alu -28 284 1 340 173 0 0 chr1 22433147 22433199 -259760465 + MER46C DNA MER2_type 285 336 -2 1444 129 62 0 chr1 22433203 22433444 -259760220 - Tigger7 DNA MER2_type 0 2487 2232 755 142 8 24 chr1 22433445 22433572 -259760092 + AluJb SINE Alu 2 126 -186 309 153 0 34 chr1 22433573 22433632 -259760032 - Tigger7 DNA MER2_type -281 58 2 354 150 133 133 chr1 22434377 22434435 -259759229 + MER81 DNA DNA 2 62 -52 2199 119 7 0 chr1 22434435 22434738 -259758926 - AluSg SINE Alu -5 305 1 354 150 133 133 chr1 22434738 22434792 -259758872 + MER81 DNA DNA 61 114 0 1261 168 0 0 chr1 22434879 22435082 -259758582 + AluSx SINE Alu 1 203 -109 570 99 0 25 chr1 22435082 22435266 -259758398 + AluSx SINE Alu 69 303 0 1275 98 0 0 chr1 22435266 22435430 -259758234 + AluSx SINE Alu 134 297 -15 2351 75 0 3 chr1 22435661 22435954 -259757710 - AluSc SINE Alu -17 292 1 2332 75 0 0 chr1 22436227 22436534 -259757130 - AluY SINE Alu 0 307 1 2574 60 0 16 chr1 22436883 22437198 -259756466 + AluY SINE Alu 2 311 0 2466 81 0 7 chr1 22437271 22437578 -259756086 + AluSx SINE Alu 1 305 -7 266 253 105 11 chr1 22437715 22437810 -259755854 - MIR SINE MIR -37 225 122 1350 165 139 0 chr1 22437810 22438076 -259755588 + AluJb SINE Alu 1 303 -9 645 211 76 23 chr1 22438544 22438715 -259754949 - MER5A DNA MER1_type 0 189 10 402 131 16 0 chr1 22438918 22438979 -259754685 + AluS SINE Alu 1 62 -246 574 182 25 8 chr1 22488979 22489100 -259704564 - AluJb SINE Alu -188 124 2 340 317 33 0 chr1 22489262 22489382 -259704282 + MIR SINE MIR 117 240 -22 1142 204 63 5 chr1 22490681 22490902 -259702762 - AluJo SINE Alu -78 234 1 341 137 0 0 chr1 22490902 22490953 -259702711 - Alu SINE Alu -9 293 243 28 0 0 0 chr1 22490953 22490981 -259702683 + AT_rich Low_complexity Low_complexity 1 28 0 1793 166 26 0 chr1 22491321 22491623 -259702041 - AluJo SINE Alu -2 310 1 6781 20 7 2 chr1 22492206 22493064 -259700600 - L1PA4 LINE L1 -80 6075 5211 2317 90 0 56 chr1 22493603 22493926 -259699738 + AluSx SINE Alu 1 305 -7 1711 168 18 18 chr1 22494217 22494502 -259699162 + AluJo SINE Alu 1 285 -27 1199 131 0 0 chr1 22494647 22494807 -259698857 + AluSg/x SINE Alu 132 291 -21 526 251 42 33 chr1 22495058 22495273 -259698391 + SVA Other Other 649 865 -521 3926 100 31 44 chr1 22495340 22496343 -259697321 + SVA Other Other 433 1426 0 1707 154 45 3 chr1 22496725 22497017 -259696647 - AluJb SINE Alu -8 304 1 1928 150 3 10 chr1 22497400 22497700 -259695964 + AluJb SINE Alu 1 298 -14 698 192 24 0 chr1 22497984 22498109 -259695555 - FLAM_A SINE Alu -5 128 1 31 26 0 0 chr1 22498299 22498337 -259695327 + AT_rich Low_complexity Low_complexity 1 38 0 555 155 0 0 chr1 22498369 22498453 -259695211 - AluJb SINE Alu -20 292 209 518 121 0 147 chr1 22498459 22498594 -259695070 - AluJb SINE Alu 0 312 212 2214 92 7 13 chr1 22498594 22498899 -259694765 + L1PA13 LINE L1 5861 6163 0 518 121 0 147 chr1 22498899 22498912 -259694752 - AluJb SINE Alu -100 212 199 260 113 52 41 chr1 22498912 22499009 -259694655 + GA-rich Low_complexity Low_complexity 1 98 0 6910 118 93 12 chr1 22499015 22500172 -259693492 + MER52C LTR ERV1 28 1278 0 523 295 78 50 chr1 22500278 22500597 -259693067 - L1M4c LINE L1 -6028 356 29 2144 89 4 7 chr1 22500941 22501221 -259692443 - AluSx SINE Alu -33 279 1 2388 69 3 16 chr1 22501293 22501596 -259692068 - AluY SINE Alu -11 300 2 2306 75 0 0 chr1 22501946 22502253 -259691411 + AluY SINE Alu 1 307 0 2271 76 7 3 chr1 22502526 22502817 -259690847 + AluSc SINE Alu 1 292 -17 1261 98 0 0 chr1 22503048 22503212 -259690452 - AluSx SINE Alu -15 297 134 198 0 0 0 chr1 22503212 22503234 -259690430 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 601 122 0 0 chr1 22503234 22503316 -259690348 - AluSx SINE Alu -28 281 200 429 50 0 67 chr1 22503321 22503381 -259690283 - AluSx SINE Alu -173 139 84 1541 142 43 25 chr1 22504333 22504614 -259689050 + AluJo SINE Alu 1 286 -26 1321 175 35 45 chr1 22504625 22504766 -259688898 + AluJb SINE Alu 5 146 -166 2163 92 20 7 chr1 22504766 22505060 -259688604 + AluY SINE Alu 1 298 -13 1321 175 35 45 chr1 22505060 22505204 -259688460 + AluJb SINE Alu 146 287 -25 2046 97 59 3 chr1 22505211 22505501 -259688163 + AluSg SINE Alu 1 306 -4 2052 138 3 0 chr1 22505505 22505816 -259687848 + AluSx SINE Alu 1 312 0 2269 105 0 0 chr1 22506176 22506472 -259687192 - AluSx SINE Alu -16 296 1 750 194 16 0 chr1 22506736 22506860 -259686804 - FLAM_A SINE Alu -7 126 1 2115 97 31 3 chr1 22507280 22507570 -259686094 - AluSx SINE Alu -8 304 7 25 0 0 0 chr1 22507779 22507804 -259685860 + AT_rich Low_complexity Low_complexity 1 25 0 1552 164 63 4 chr1 22507804 22508072 -259685592 - AluJo SINE Alu -28 284 1 343 173 0 0 chr1 22508586 22508638 -259685026 + MER46C DNA MER2_type 285 336 -2 1461 129 62 0 chr1 22508642 22508883 -259684781 - Tigger7 DNA MER2_type 0 2487 2232 805 142 8 24 chr1 22508884 22509011 -259684653 + AluJb SINE Alu 2 126 -186 307 153 0 34 chr1 22509012 22509071 -259684593 - Tigger7 DNA MER2_type -281 58 2 392 150 133 133 chr1 22509816 22509874 -259683790 + MER81 DNA DNA 2 62 -52 2181 119 7 0 chr1 22509874 22510177 -259683487 - AluSg SINE Alu -5 305 1 392 150 133 133 chr1 22510177 22510231 -259683433 + MER81 DNA DNA 61 114 0 439 236 51 32 chr1 22510391 22510548 -259683116 - L1MEd LINE L1 -2787 3342 3183 787 96 0 0 chr1 22510548 22510652 -259683012 - AluSg/x SINE Alu -3 307 204 567 222 189 23 chr1 22510652 22510781 -259682883 - L1MEd LINE L1 -2938 3191 3085 852 163 0 15 chr1 22510781 22510916 -259682748 - FLAM_C SINE Alu 0 133 1 567 222 189 23 chr1 22510916 22511092 -259682572 - L1MEd LINE L1 -3044 3085 2835 434 276 84 41 chr1 22511095 22511510 -259682154 - L1MEd LINE L1 -4756 1554 1080 1565 191 33 3 chr1 22511564 22511867 -259681797 - AluJo SINE Alu 0 312 1 417 310 78 20 chr1 22511951 22512196 -259681468 - L1MEd LINE L1 -5295 824 566 183 129 0 0 chr1 22513431 22513462 -259680202 + (A)n Simple_repeat Simple_repeat 1 31 0 519 208 8 54 chr1 22513521 22513651 -259680013 + FLAM_A SINE Alu 1 124 -9 323 279 51 13 chr1 22514200 22514279 -259679385 - MIR SINE MIR -158 104 23 2193 110 0 0 chr1 22514371 22514653 -259679011 - AluSx SINE Alu -25 287 6 2541 81 0 0 chr1 22514670 22514979 -259678685 - AluSc SINE Alu 0 309 1 2280 113 3 0 chr1 22516221 22516521 -259677143 - AluSc SINE Alu -8 301 1 362 177 9 106 chr1 22516660 22516773 -259676891 + MER103 DNA DNA 24 125 -41 229 382 24 8 chr1 22517695 22517818 -259675846 - L2 LINE L2 -229 3084 2960 31 26 0 0 chr1 22519449 22519487 -259674177 + AT_rich Low_complexity Low_complexity 1 38 0 11555 23 4 1 chr1 22519797 22521843 -259671821 - L1PA2 LINE L1 0 6155 4106 2490 24 0 0 chr1 22521843 22522131 -259671533 + L1PA2 LINE L1 3842 4129 -2017 21 0 0 0 chr1 22522131 22522152 -259671512 + AT_rich Low_complexity Low_complexity 1 21 0 5631 204 81 18 chr1 22522225 22522356 -259671308 + L1M1 LINE L1 3503 3624 -3941 1425 189 57 17 chr1 22522356 22522653 -259671011 + AluJb SINE Alu 1 309 -3 5631 204 81 18 chr1 22522653 22523847 -259669817 + L1M1 LINE L1 3624 4951 -2614 1778 185 10 0 chr1 22523847 22524144 -259669520 + AluJb SINE Alu 1 300 -12 5631 204 81 18 chr1 22524144 22524271 -259669393 + L1M1 LINE L1 4951 5069 -2496 1035 175 0 6 chr1 22524272 22524438 -259669226 - AluJb SINE Alu -113 199 35 1596 195 3 13 chr1 22524438 22524736 -259668928 - AluJo SINE Alu -17 295 1 2299 86 14 0 chr1 22525402 22525693 -259667971 - AluSc SINE Alu -14 295 1 1858 172 14 0 chr1 22526875 22527166 -259666498 - AluJb SINE Alu -17 295 1 2103 101 7 3 chr1 22527177 22527465 -259666199 - AluSg SINE Alu -21 289 1 1086 90 0 0 chr1 22527465 22527598 -259666066 - AluSg SINE Alu -176 134 2 1725 127 80 4 chr1 22527702 22527977 -259665687 - AluSx SINE Alu -16 296 1 280 246 18 0 chr1 22529430 22529487 -259664177 + U7 snRNA snRNA 2 59 -4 28 0 0 0 chr1 22529489 22529517 -259664147 + AT_rich Low_complexity Low_complexity 1 28 0 387 281 85 30 chr1 22530322 22530557 -259663107 - L1MC4 LINE L1 -266 7776 7529 2151 125 7 0 chr1 22530558 22530854 -259662810 - AluSp SINE Alu -15 298 1 366 226 43 0 chr1 22530935 22531028 -259662636 - HAL1 LINE L1 -2309 198 102 1702 164 34 20 chr1 22531033 22531326 -259662338 - AluJo SINE Alu -15 297 1 1990 125 0 3 chr1 22531421 22531731 -259661933 + AluSx SINE Alu 1 309 0 7111 157 32 34 chr1 22531833 22532747 -259660917 - L1PA12 LINE L1 0 6168 5254 2232 81 36 23 chr1 22532747 22533056 -259660608 + AluSq SINE Alu 1 313 0 7111 157 32 34 chr1 22533056 22533568 -259660096 - L1PA12 LINE L1 -914 5254 4743 2364 67 0 0 chr1 22533568 22533890 -259659774 + AluY SINE Alu 1 322 0 7111 157 32 34 chr1 22533890 22534568 -259659096 - L1PA12 LINE L1 -1425 4743 4051 308 259 171 85 chr1 22534609 22534914 -259658750 + L2 LINE L2 2965 3295 -18 471 230 230 29 chr1 22534915 22535124 -259658540 + MIR SINE MIR 6 256 -6 779 318 5 5 chr1 22535252 22535472 -259658192 + MIR SINE MIR 31 250 -12 2071 126 13 3 chr1 22536152 22536453 -259657211 - AluJb SINE Alu -8 304 1 263 298 119 0 chr1 22536670 22536754 -259656910 + L2 LINE L2 3113 3206 -66 227 287 139 28 chr1 22536815 22536923 -259656741 + MIR SINE MIR 65 184 -78 2385 103 3 0 chr1 22536953 22537263 -259656401 + AluSx SINE Alu 1 311 -1 23 54 0 0 chr1 22537736 22537773 -259655891 + AT_rich Low_complexity Low_complexity 1 37 0 535 248 45 19 chr1 22538789 22538946 -259654718 - MIR SINE MIR -1 261 101 1560 135 0 0 chr1 22539927 22540157 -259653507 + AluSq SINE Alu 1 230 -83 2328 75 0 3 chr1 22540333 22540626 -259653038 - AluSc SINE Alu -17 292 1 2305 75 0 0 chr1 22540899 22541206 -259652458 - AluY SINE Alu 0 307 1 2432 69 0 16 chr1 22541556 22541860 -259651804 + AluY SINE Alu 2 300 -11 2525 76 0 6 chr1 22541932 22542246 -259651418 + AluSx SINE Alu 1 312 0 292 253 105 11 chr1 22542388 22542483 -259651181 - MIR SINE MIR -37 225 122 1334 165 139 0 chr1 22542483 22542749 -259650915 + AluJb SINE Alu 1 303 -9 706 211 76 23 chr1 22543217 22543388 -259650276 - MER5A DNA MER1_type 0 189 10 2288 116 7 0 chr1 22543591 22543901 -259649763 + AluSx SINE Alu 1 312 0 704 247 29 29 chr1 22544342 22544394 -259649270 - MER5B DNA MER1_type -7 171 120 180 0 0 0 chr1 22544394 22544414 -259649250 + (GA)n Simple_repeat Simple_repeat 1 20 0 704 247 29 29 chr1 22544414 22544531 -259649133 - MER5B DNA MER1_type -57 121 2 185 338 14 28 chr1 22544894 22544965 -259648699 - MIR3 SINE MIR -130 78 9 617 124 0 41 chr1 22545131 22545228 -259648436 - FRAM SINE Alu -19 157 65 1398 129 14 5 chr1 22545440 22545649 -259648015 - AluSg/x SINE Alu -19 291 81 22 0 0 0 chr1 22546050 22546072 -259647592 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr1 22546271 22546293 -259647371 + AT_rich Low_complexity Low_complexity 1 22 0 214 191 0 0 chr1 22546860 22546902 -259646762 + A-rich Low_complexity Low_complexity 1 42 0 286 315 81 0 chr1 22546964 22547075 -259646589 - MIR SINE MIR -48 214 95 2215 118 0 0 chr1 22547181 22547478 -259646186 + AluSx SINE Alu 1 297 -15 1849 158 11 0 chr1 22547888 22548202 -259645462 - AluJb SINE Alu 0 317 1 1749 171 0 44 chr1 22548263 22548578 -259645086 - AluJo SINE Alu -11 301 1 417 276 35 14 chr1 22548588 22548733 -259644931 + MLT1J LTR MaLR 69 216 -295 720 184 0 27 chr1 22548740 22548887 -259644777 + FLAM_C SINE Alu 1 143 0 2225 110 10 0 chr1 22548921 22549231 -259644433 - AluSq SINE Alu 0 313 1 3100 196 73 78 chr1 22549331 22550007 -259643657 + L1MC3 LINE L1 6684 7355 -430 1827 141 4 18 chr1 22550007 22550283 -259643381 - AluJo SINE Alu -17 295 24 3100 196 73 78 chr1 22550283 22550697 -259642967 + L1MC3 LINE L1 7355 7769 -16 1047 121 13 0 chr1 22550885 22551042 -259642622 + AluSg/x SINE Alu 146 304 -6 23 0 0 0 chr1 22551128 22551151 -259642513 + AT_rich Low_complexity Low_complexity 1 23 0 252 303 182 10 chr1 22551457 22551556 -259642108 + L2 LINE L2 3193 3308 -5 2143 89 16 23 chr1 22551744 22552048 -259641616 + AluSx SINE Alu 1 302 -10 1143 105 0 0 chr1 22552887 22553040 -259640624 + FRAM SINE Alu 8 160 -16 1321 130 5 0 chr1 22553051 22553251 -259640413 + MER1B DNA MER1_type 1 201 -96 256 310 0 0 chr1 22554101 22554159 -259639505 + (CA)n Simple_repeat Simple_repeat 2 59 0 1095 127 6 0 chr1 22555568 22555726 -259637938 - AluSg/x SINE Alu -5 305 147 334 115 0 19 chr1 22555727 22555779 -259637885 - AluSg/x SINE Alu -95 207 157 1668 88 0 5 chr1 22555779 22555995 -259637669 - AluSq SINE Alu -98 215 1 2393 69 0 0 chr1 22556212 22556502 -259637162 + AluY SINE Alu 1 290 -21 1933 92 4 0 chr1 22556792 22557042 -259636622 - AluSq SINE Alu -19 294 44 233 278 0 0 chr1 22557517 22557528 -259636136 + MER3 DNA MER1_type 37 47 -162 551 263 134 6 chr1 22557528 22557707 -259635957 - MER3 DNA MER1_type 0 209 8 1977 136 3 26 chr1 22557789 22557956 -259635708 - AluSx SINE Alu -17 295 137 2357 100 3 0 chr1 22557956 22558266 -259635398 - AluY SINE Alu 0 311 1 1977 136 3 26 chr1 22558266 22558400 -259635264 - AluSx SINE Alu -175 137 1 2118 129 0 13 chr1 22558757 22559066 -259634598 - AluSx SINE Alu -7 305 1 198 0 0 0 chr1 22559067 22559089 -259634575 + (TTC)n Simple_repeat Simple_repeat 3 24 0 893 118 0 8 chr1 22559107 22559226 -259634438 - FLAM_C SINE Alu -25 118 1 847 103 41 0 chr1 22559482 22559627 -259634037 + L1MA7 LINE L1 6140 6290 -1 625 182 0 25 chr1 22559964 22560085 -259633579 + FLAM_A SINE Alu 11 128 -14 1726 179 3 20 chr1 22561094 22561395 -259632269 + AluJo SINE Alu 1 296 -16 1291 113 113 0 chr1 22561397 22561582 -259632082 + AluSq SINE Alu 1 206 -107 207 167 22 67 chr1 22561908 22561998 -259631666 + (TCTCTG)n Simple_repeat Simple_repeat 6 91 0 967 94 8 0 chr1 22562106 22562263 -259631401 - AluSg/x SINE Alu 0 313 156 882 55 0 0 chr1 22562264 22562374 -259631290 - AluSp SINE Alu -203 110 1 504 134 21 21 chr1 22562969 22563066 -259630598 + FLAM_A SINE Alu 43 139 -3 280 263 38 0 chr1 22563825 22563905 -259629759 - MER5A DNA MER1_type -103 86 4 1632 170 3 39 chr1 22564495 22564817 -259628847 + AluJb SINE Alu 12 323 0 22 35 0 0 chr1 22564850 22564879 -259628785 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr1 22565463 22565486 -259628178 + AT_rich Low_complexity Low_complexity 1 23 0 2555 59 0 3 chr1 22566952 22567256 -259626408 + AluY SINE Alu 1 303 -8 1488 252 98 42 chr1 22567991 22568759 -259624905 + L2 LINE L2 2420 3240 -73 2320 62 3 7 chr1 22568786 22569075 -259624589 + AluSg1 SINE Alu 1 288 -21 1952 131 25 0 chr1 22569670 22569964 -259623700 - AluSx SINE Alu 0 301 1 181 434 85 0 chr1 22570106 22570235 -259623429 + L2 LINE L2 3122 3261 -11 22 0 0 0 chr1 22570632 22570654 -259623010 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr1 22570853 22570875 -259622789 + AT_rich Low_complexity Low_complexity 1 22 0 214 191 0 0 chr1 22571442 22571484 -259622180 + A-rich Low_complexity Low_complexity 1 42 0 286 315 81 0 chr1 22571546 22571657 -259622007 - MIR SINE MIR -48 214 95 2215 118 0 0 chr1 22571763 22572060 -259621604 + AluSx SINE Alu 1 297 -15 1849 158 11 0 chr1 22572470 22572784 -259620880 - AluJb SINE Alu 0 317 1 1749 171 0 44 chr1 22572845 22573160 -259620504 - AluJo SINE Alu -11 301 1 417 276 35 14 chr1 22573170 22573315 -259620349 + MLT1J LTR MaLR 69 216 -295 720 184 0 27 chr1 22573322 22573469 -259620195 + FLAM_C SINE Alu 1 143 0 2455 87 3 0 chr1 22573503 22573815 -259619849 - AluSp SINE Alu 0 313 1 347 188 125 31 chr1 22573952 22574048 -259619616 + MLT1J LTR MaLR 403 507 -4 224 301 97 29 chr1 22577137 22577240 -259616424 + MIR SINE MIR 40 149 -59 346 346 69 15 chr1 22577321 22577451 -259616213 + MIR3 SINE MIR 9 145 -63 532 240 171 28 chr1 22577479 22577696 -259615968 + MIR SINE MIR 1 248 -14 1593 206 29 14 chr1 22578298 22578647 -259615017 - MLT1A2 LTR MaLR -3 371 18 690 171 0 89 chr1 22579384 22579530 -259614134 - FLAM_A SINE Alu 0 133 1 2567 66 0 0 chr1 22579564 22579868 -259613796 + AluY SINE Alu 1 304 -7 520 239 15 31 chr1 22580529 22580659 -259613005 - L2 LINE L2 0 3313 3186 217 250 0 0 chr1 22581014 22581062 -259612602 + (TATATG)n Simple_repeat Simple_repeat 3 50 0 700 183 107 41 chr1 22581352 22581549 -259612115 - MER20 DNA MER1_type -2 217 8 1219 149 0 0 chr1 22581973 22582154 -259611510 - AluSg/x SINE Alu 0 312 132 1673 167 18 18 chr1 22582302 22582584 -259611080 - AluJo SINE Alu -30 282 1 2274 90 0 56 chr1 22582875 22583198 -259610466 - AluSx SINE Alu -7 305 1 621 243 148 28 chr1 22583256 22583668 -259609996 - L1ME3A LINE L1 -208 5962 5491 5299 66 32 0 chr1 22583903 22584645 -259609019 - L1PA8A LINE L1 -27 6104 5339 540 246 130 46 chr1 22584699 22585044 -259608620 - L1ME3A LINE L1 -818 5328 4955 1455 210 3 30 chr1 22585136 22585441 -259608223 - AluJo SINE Alu -15 297 1 261 271 0 0 chr1 22585486 22585556 -259608108 + L1ME3A LINE L1 6078 6147 -23 276 300 71 13 chr1 22585557 22585711 -259607953 - MER63 DNA MER1_type 0 1060 677 1490 205 8 0 chr1 22585806 22586060 -259607604 + AluJo SINE Alu 19 274 -38 1836 158 26 29 chr1 22586096 22586406 -259607258 + AluJo SINE Alu 1 309 -3 365 256 16 8 chr1 22586482 22586607 -259607057 + L1MC4a LINE L1 5757 5882 -1926 1460 150 84 25 chr1 22586872 22587146 -259606518 + AluJo SINE Alu 1 290 -22 188 314 0 20 chr1 22587338 22587389 -259606275 + MIR SINE MIR 20 69 -139 342 353 46 14 chr1 22587500 22587720 -259605944 + MIR SINE MIR 37 261 -1 474 286 47 42 chr1 22587794 22587986 -259605678 - MIR SINE MIR -13 249 57 2048 106 0 75 chr1 22588003 22588323 -259605341 - AluSx SINE Alu -16 296 1 21 36 0 0 chr1 22588326 22588354 -259605310 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr1 22589743 22589767 -259603897 + AT_rich Low_complexity Low_complexity 1 24 0 463 201 24 33 chr1 22589883 22590020 -259603644 + L1ME LINE L1 5512 5649 -472 3334 219 64 43 chr1 22590169 22590627 -259603037 + L1M4 LINE L1 3950 4397 -1749 1993 148 10 3 chr1 22590627 22590930 -259602734 + AluSx SINE Alu 1 305 -7 3334 219 64 43 chr1 22590930 22591660 -259602004 + L1M4 LINE L1 4397 5163 -983 1872 173 0 3 chr1 22591661 22591950 -259601714 + AluJb SINE Alu 1 288 -24 266 0 0 29 chr1 22591961 22591996 -259601668 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 1844 157 10 3 chr1 22592037 22592331 -259601333 + AluJb SINE Alu 1 296 -16 351 0 0 0 chr1 22592333 22592372 -259601292 + (CA)n Simple_repeat Simple_repeat 2 40 0 1149 156 141 51 chr1 22592399 22592496 -259601168 + AluJo SINE Alu 15 102 -210 2303 100 0 3 chr1 22592496 22592806 -259600858 + AluSx SINE Alu 3 311 -1 1149 156 141 51 chr1 22592806 22592964 -259600700 + AluJo SINE Alu 102 293 -19 1747 168 28 0 chr1 22592966 22593252 -259600412 + AluJo SINE Alu 3 296 -16 2054 120 3 19 chr1 22593493 22593802 -259599862 + AluSg SINE Alu 1 304 -6 185 272 62 12 chr1 22594520 22594601 -259599063 + MIR SINE MIR 117 201 -61 1856 114 43 85 chr1 22595004 22595356 -259598308 - MER1B DNA MER1_type 0 337 1 362 299 26 8 chr1 22595430 22595547 -259598117 - MIR SINE MIR -16 246 128 21 0 0 0 chr1 22598511 22598532 -259595132 + AT_rich Low_complexity Low_complexity 1 21 0 186 318 200 12 chr1 22598704 22598874 -259594790 + MIR SINE MIR 5 206 -56 2356 77 20 0 chr1 22599646 22599945 -259593719 - AluY SINE Alu -6 305 1 21 0 0 0 chr1 22599946 22599967 -259593697 + AT_rich Low_complexity Low_complexity 1 21 0 2066 134 0 0 chr1 22600122 22600414 -259593250 - AluSx SINE Alu -6 306 15 1821 149 0 43 chr1 22600609 22600911 -259592753 - AluJb SINE Alu -23 289 1 221 232 0 74 chr1 22601548 22601643 -259592021 + A-rich Low_complexity Low_complexity 3 90 0 2254 67 0 58 chr1 22601646 22601959 -259591705 + AluY SINE Alu 1 295 -16 564 143 0 0 chr1 22603005 22603089 -259590575 - AluJb SINE Alu -22 290 207 1329 182 3 84 chr1 22603090 22603387 -259590277 - AluJo SINE Alu -39 273 1 802 102 79 0 chr1 22604676 22604803 -259588861 + MER85 DNA T2_type 1 137 -2 6575 142 42 27 chr1 22605703 22606330 -259587334 + Tigger3b DNA MER2_type 1 656 -2372 1622 166 86 14 chr1 22606330 22606620 -259587044 + AluJo SINE Alu 1 311 -1 6575 142 42 27 chr1 22606620 22607203 -259586461 + Tigger3b DNA MER2_type 656 1229 -2 236 163 81 23 chr1 22608028 22608114 -259585550 + (TATAA)n Simple_repeat Simple_repeat 1 91 0 620 173 0 0 chr1 22608395 22608505 -259585159 + FLAM_C SINE Alu 33 142 -1 23 0 0 0 chr1 22608506 22608529 -259585135 + AT_rich Low_complexity Low_complexity 1 23 0 635 208 106 21 chr1 22608544 22608780 -259584884 + MER112 DNA MER1_type 1 256 0 2376 86 3 0 chr1 22608885 22609186 -259584478 - AluSp SINE Alu -11 302 1 192 200 0 0 chr1 22610669 22610709 -259582955 + A-rich Low_complexity Low_complexity 1 40 0 2388 81 3 0 chr1 22612223 22612518 -259581146 - AluSg SINE Alu -14 296 1 2143 129 0 0 chr1 22612803 22613097 -259580567 - AluSx SINE Alu -18 294 1 1042 221 149 10 chr1 22613193 22613482 -259580182 + MER58B DNA MER1_type 10 338 -3 1614 183 3 10 chr1 22614504 22614804 -259578860 - AluJb SINE Alu -14 298 1 368 307 47 24 chr1 22615435 22615562 -259578102 + MIR3 SINE MIR 53 182 -26 273 29 0 0 chr1 22616968 22617002 -259576662 + (CA)n Simple_repeat Simple_repeat 2 35 0 7642 29 6 4 chr1 22617550 22618494 -259575170 - L1PA4 LINE L1 -3 6152 5213 2311 97 0 7 chr1 22619024 22619324 -259574340 + AluSx SINE Alu 1 298 -14 1857 159 0 3 chr1 22619935 22620231 -259573433 - AluJo SINE Alu -9 303 9 2165 114 7 0 chr1 22620460 22620767 -259572897 + AluSg SINE Alu 1 309 -1 1782 165 23 0 chr1 22621441 22621744 -259571920 + AluJo SINE Alu 1 310 -2 28 0 0 0 chr1 22622084 22622112 -259571552 + AT_rich Low_complexity Low_complexity 1 28 0 348 125 0 0 chr1 22622112 22622160 -259571504 + Alu SINE Alu 243 290 -12 1405 209 50 4 chr1 22622163 22622441 -259571223 + AluJo SINE Alu 1 291 -21 1250 184 48 32 chr1 22623441 22623691 -259569973 + AluJo SINE Alu 35 288 -24 503 249 56 20 chr1 22623892 22624074 -259569590 - L1M4 LINE L1 -2909 3237 3042 2512 55 0 7 chr1 22624074 22624381 -259569283 - AluY SINE Alu -6 305 1 503 249 56 20 chr1 22624381 22624447 -259569217 - L1M4 LINE L1 -3104 3042 2980 2097 185 73 29 chr1 22624449 22624925 -259568739 + MLT1D LTR MaLR 1 497 -8 873 224 190 3 chr1 22624940 22625266 -259568398 - L1M4 LINE L1 -3195 2951 2565 448 228 44 61 chr1 22625420 22625557 -259568107 - MLT1D LTR MaLR -105 400 287 3107 237 75 48 chr1 22625557 22626474 -259567190 + L1ME1 LINE L1 3553 4518 -1628 2185 69 0 4 chr1 22626474 22626750 -259566914 + AluY SINE Alu 37 311 0 3107 237 75 48 chr1 22626750 22627145 -259566519 + L1ME1 LINE L1 4518 4901 -1245 1582 226 82 53 chr1 22627143 22627487 -259566177 + L1ME1 LINE L1 5516 5881 -285 * 1708 150 10 43 chr1 22627487 22627787 -259565877 + AluJb SINE Alu 1 290 -22 1582 226 82 53 chr1 22627787 22627952 -259565712 + L1ME1 LINE L1 5881 6040 -126 1686 180 7 0 chr1 22628491 22628780 -259564884 - AluJo SINE Alu -21 291 1 793 157 8 15 chr1 22628982 22629116 -259564548 - FLAM_A SINE Alu 0 133 1 369 295 9 37 chr1 22629209 22629397 -259564267 - L1MC/D LINE L1 -736 5434 5293 1661 199 14 0 chr1 22629480 22629777 -259563887 - AluJb SINE Alu -11 301 1 2330 85 10 0 chr1 22630183 22630476 -259563188 - AluSp SINE Alu -15 298 3 27 73 0 0 chr1 22631269 22631324 -259562340 + AT_rich Low_complexity Low_complexity 1 55 0 322 247 88 65 chr1 22631487 22631657 -259562007 + L1M4 LINE L1 4649 4822 -1324 2175 92 28 0 chr1 22632584 22632868 -259560796 - AluSp SINE Alu -20 293 2 274 325 13 0 chr1 22633074 22633151 -259560513 + L2 LINE L2 3158 3235 -37 393 279 79 13 chr1 22633237 22633386 -259560278 - MIR SINE MIR -63 145 3 228 35 0 0 chr1 22634082 22634111 -259559553 + (TA)n Simple_repeat Simple_repeat 2 30 0 232 367 47 8 chr1 22634112 22634240 -259559424 + L2 LINE L2 3180 3312 -1 2013 117 13 17 chr1 22634831 22635130 -259558534 - AluSx SINE Alu -10 302 5 200 129 0 0 chr1 22635675 22635706 -259557958 + L2 LINE L2 3281 3311 -2 1548 192 11 0 chr1 22635827 22636103 -259557561 - AluJo SINE Alu -33 279 1 585 302 233 0 chr1 22636454 22636656 -259557008 + MIR SINE MIR 14 262 0 1744 171 44 0 chr1 22636669 22636967 -259556697 + AluJo SINE Alu 1 311 -1 1155 116 18 0 chr1 22637318 22637482 -259556182 - AluSq SINE Alu -13 300 134 1311 154 13 13 chr1 22638130 22638357 -259555307 - AluJo SINE Alu -11 301 75 2104 90 17 7 chr1 22638680 22638970 -259554694 - AluSc SINE Alu -16 293 1 2180 172 37 11 chr1 22638996 22639433 -259554231 - L1MB7 LINE L1 -16 6168 5721 698 238 66 6 chr1 22639882 22640083 -259553581 - MIR SINE MIR 0 262 48 4251 101 35 159 chr1 22640184 22640842 -259552822 - Tigger1 DNA MER2_type 0 2418 1771 821 172 8 0 chr1 22640842 22640970 -259552694 - FLAM_A SINE Alu -13 129 1 4251 101 35 159 chr1 22640970 22641137 -259552527 - Tigger1 DNA MER2_type -647 1771 1585 512 206 7 96 chr1 22641137 22641273 -259552391 - FLAM_A SINE Alu -15 127 4 241 91 0 0 chr1 22641273 22641306 -259552358 - Tigger1 DNA MER2_type -830 1588 1556 188 290 0 32 chr1 22641306 22641368 -259552296 - L2 LINE L2 -619 2695 2636 8207 128 78 35 chr1 22641455 22641917 -259551747 - Tigger1 DNA MER2_type -866 1552 1111 2301 105 0 0 chr1 22641917 22642213 -259551451 + AluSc SINE Alu 1 296 -13 8207 128 78 35 chr1 22642213 22643238 -259550426 - Tigger1 DNA MER2_type -1307 1111 1 271 333 95 66 chr1 22643449 22643647 -259550017 - L2 LINE L2 -583 2731 2540 2148 104 0 4 chr1 22643647 22643927 -259549737 + AluSg SINE Alu 1 279 -31 271 333 95 66 chr1 22643927 22644214 -259549450 - L2 LINE L2 -774 2540 2232 361 192 0 90 chr1 22644215 22644293 -259549371 - AluJ/FLAM SINE Alu -245 57 2 308 242 11 33 chr1 22644296 22644387 -259549277 + L1ME1 LINE L1 6064 6152 -14 184 300 0 0 chr1 22644800 22644850 -259548814 - L2 LINE L2 -1898 1416 1367 339 274 296 18 chr1 22645104 22645327 -259548337 + L2 LINE L2 3013 3297 -16 211 338 0 0 chr1 22645481 22645552 -259548112 + MIR SINE MIR 84 154 -108 839 170 0 0 chr1 22645831 22645990 -259547674 - L1MA4A LINE L1 -6 6297 6139 21 0 0 0 chr1 22646871 22646892 -259546772 + AT_rich Low_complexity Low_complexity 1 21 0 601 261 86 116 chr1 22647300 22647920 -259545744 + L1MEd LINE L1 224 824 -5295 2139 119 7 0 chr1 22648271 22648566 -259545098 - AluSx SINE Alu -15 297 1 2434 84 0 7 chr1 22649098 22649407 -259544257 + AluSg SINE Alu 1 307 -3 2130 130 0 3 chr1 22650119 22650427 -259543237 - AluSx SINE Alu -5 307 1 201 234 0 0 chr1 22651978 22652025 -259541639 + GA-rich Low_complexity Low_complexity 2 48 0 24 0 0 0 chr1 22653022 22653046 -259540618 + AT_rich Low_complexity Low_complexity 1 24 0 1086 172 6 0 chr1 22653283 22653457 -259540207 + FRAM SINE Alu 1 169 -7 618 14 0 0 chr1 22654246 22654317 -259539347 + (TG)n Simple_repeat Simple_repeat 2 72 0 1811 190 0 0 chr1 22654504 22654809 -259538855 + AluJo SINE Alu 1 305 -7 247 276 0 0 chr1 22654812 22654870 -259538794 + GA-rich Low_complexity Low_complexity 1 58 0 1189 174 116 27 chr1 22655022 22655308 -259538356 + AluJb SINE Alu 1 309 0 400 258 45 59 chr1 22655485 22655740 -259537924 + L1ME4a LINE L1 5624 5881 -240 1644 165 3 63 chr1 22655740 22656055 -259537609 - AluJb SINE Alu -15 297 2 207 0 0 0 chr1 22656060 22656083 -259537581 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 400 258 45 59 chr1 22656083 22656108 -259537556 + L1ME4a LINE L1 5885 5906 -215 326 264 23 78 chr1 22656323 22656452 -259537212 + MER20B DNA MER1_type 64 185 -598 674 265 23 50 chr1 22656842 22657061 -259536603 - MIR SINE MIR 0 262 50 1777 183 23 0 chr1 22657339 22657640 -259536024 + AluJb SINE Alu 1 308 -4 426 179 32 0 chr1 22657800 22657923 -259535741 + GA-rich Low_complexity Low_complexity 3 129 0 1744 112 0 0 chr1 22659093 22659326 -259534338 + AluSx SINE Alu 3 235 -77 195 42 0 0 chr1 22659335 22659359 -259534305 + (A)n Simple_repeat Simple_repeat 1 24 0 436 285 87 23 chr1 22659764 22659936 -259533728 - MIR SINE MIR -48 214 32 2162 117 3 7 chr1 22662520 22662819 -259530845 - AluSc SINE Alu -11 298 1 2174 102 0 3 chr1 22662932 22663251 -259530413 + AluSq SINE Alu 1 318 0 1185 215 68 31 chr1 22664084 22664409 -259529255 + MER58B DNA MER1_type 1 337 -4 2240 111 3 0 chr1 22664621 22664928 -259528736 + AluSg SINE Alu 1 308 -2 589 318 109 70 chr1 22665093 22665590 -259528074 - L2 LINE L2 -86 3227 2751 1881 181 0 10 chr1 22665590 22665899 -259527765 - AluJb SINE Alu -6 306 1 589 318 109 70 chr1 22665899 22666335 -259527329 - L2 LINE L2 -562 2751 2263 361 36 125 0 chr1 22666543 22666599 -259527065 + THE1C LTR MaLR 1 63 -312 671 308 130 14 chr1 22666666 22666958 -259526706 - L2 LINE L2 -557 2757 2432 180 0 0 0 chr1 22666982 22667002 -259526662 + (A)n Simple_repeat Simple_repeat 1 20 0 813 131 0 25 chr1 22667034 22667156 -259526508 - AluJ SINE Alu -12 300 182 733 125 27 0 chr1 22667156 22667268 -259526396 - AluJ SINE Alu -197 115 1 9664 186 37 16 chr1 22667595 22670020 -259523644 + L1P5 LINE L1 2825 5310 -841 378 0 0 0 chr1 22670020 22670062 -259523602 + (TAA)n Simple_repeat Simple_repeat 2 43 0 9664 186 37 16 chr1 22670062 22670511 -259523153 + L1P5 LINE L1 5310 5748 -403 2234 97 21 0 chr1 22670551 22670841 -259522823 + AluSq SINE Alu 3 298 -15 1595 172 34 24 chr1 22670848 22671145 -259522519 + AluJo SINE Alu 6 305 -7 29 0 0 25 chr1 22671449 22671467 -259522197 + AT_rich Low_complexity Low_complexity 1 18 -21 2308 87 0 0 chr1 22671467 22671753 -259521911 + AluSc SINE Alu 1 286 -23 29 0 0 25 chr1 22671753 22671774 -259521890 + AT_rich Low_complexity Low_complexity 18 39 0 660 204 0 0 chr1 22671842 22671984 -259521680 - L1MA4 LINE L1 -117 6183 6042 1211 135 86 37 chr1 22672515 22672759 -259520905 - Tigger2 DNA MER2_type 0 2718 2463 3408 139 39 88 chr1 22672818 22673284 -259520380 - Tigger2 DNA MER2_type -1964 754 341 840 169 0 0 chr1 22673284 22673414 -259520250 - FLAM_C SINE Alu -1 132 3 3408 139 39 88 chr1 22673414 22673740 -259519924 - Tigger2 DNA MER2_type -2377 341 1 1726 104 119 40 chr1 22674036 22674314 -259519350 + AluSx SINE Alu 1 300 -12 357 320 34 20 chr1 22674542 22674689 -259518975 - MIR3 SINE MIR -20 188 40 3271 157 43 5 chr1 22674983 22675587 -259518077 - MER73 LTR ERVL 0 644 18 343 274 44 0 chr1 22675743 22675856 -259517808 - MER94 DNA DNA -15 119 2 400 326 114 22 chr1 22676133 22676360 -259517304 - MIR SINE MIR -2 260 13 2173 105 7 7 chr1 22676840 22677134 -259516530 - AluSx SINE Alu -14 298 5 290 143 182 39 chr1 22677170 22677247 -259516417 + Charlie8 DNA MER1_type 294 381 -2036 543 185 139 0 chr1 22678330 22678438 -259515226 - FLAM_A SINE Alu -8 125 3 2068 121 0 23 chr1 22678539 22678844 -259514820 - AluSx SINE Alu -14 298 1 1013 216 135 17 chr1 22679012 22679308 -259514356 - MER2 DNA MER2_type -14 331 1 27 0 0 0 chr1 22679648 22679675 -259513989 + AT_rich Low_complexity Low_complexity 1 27 0 1008 133 32 0 chr1 22680330 22680488 -259513176 - AluSg/x SINE Alu -13 297 135 2198 103 3 0 chr1 22680695 22680985 -259512679 + AluY SINE Alu 1 291 -20 287 218 7 129 chr1 22680991 22681044 -259512620 + L1MC4a LINE L1 5780 5838 -1970 2346 83 0 0 chr1 22681044 22681334 -259512330 + AluSq SINE Alu 1 290 -23 287 218 7 129 chr1 22681334 22681427 -259512237 + L1MC4a LINE L1 5838 5908 -1900 1903 139 24 0 chr1 22682001 22682295 -259511369 - AluSx SINE Alu -11 301 1 2051 123 3 7 chr1 22682714 22683014 -259510650 + AluSx SINE Alu 1 299 -13 2626 276 114 24 chr1 22684250 22685261 -259508403 - L2 LINE L2 -731 2583 1482 204 67 0 0 chr1 22685733 22685763 -259507901 + (A)n Simple_repeat Simple_repeat 1 30 0 37 23 0 0 chr1 22685973 22686017 -259507647 + AT_rich Low_complexity Low_complexity 1 44 0 189 345 0 0 chr1 22686087 22686142 -259507522 + MIR SINE MIR 92 146 -62 976 244 0 31 chr1 22686157 22686386 -259507278 + MER58A DNA MER1_type 1 222 -2 1464 44 0 0 chr1 22686538 22686718 -259506946 - L1PA4 LINE L1 0 6155 5976 823 132 22 15 chr1 22687118 22687254 -259506410 + AluSq/x SINE Alu 1 137 -175 2318 95 0 0 chr1 22687554 22687849 -259505815 - AluSx SINE Alu -17 295 1 21 89 0 0 chr1 22687849 22687905 -259505759 + AT_rich Low_complexity Low_complexity 1 56 0 693 190 9 0 chr1 22688076 22688192 -259505472 - FLAM_C SINE Alu -16 117 1 2175 121 0 7 chr1 22688201 22688508 -259505156 - AluSc SINE Alu -4 305 1 2145 127 0 10 chr1 22688851 22689159 -259504505 + AluSg SINE Alu 1 305 -5 413 158 24 24 chr1 22689199 22689281 -259504383 - AluJ/FRAM SINE Alu -11 301 220 212 198 0 70 chr1 22689393 22689479 -259504185 + (CCCCG)n Simple_repeat Simple_repeat 4 83 0 315 188 25 25 chr1 22689883 22689963 -259503701 + AluJ/FRAM SINE Alu 220 299 -3 1662 155 17 14 chr1 22690020 22690310 -259503354 - AluSq SINE Alu -22 291 1 774 130 0 89 chr1 22690316 22690462 -259503202 - FLAM_C SINE Alu 0 133 1 1809 158 0 3 chr1 22690694 22690978 -259502686 + AluSx SINE Alu 26 308 -4 707 203 8 8 chr1 22690987 22691120 -259502544 + AluJo/FLAM SINE Alu 1 133 -179 2595 47 0 0 chr1 22691123 22691424 -259502240 + AluY SINE Alu 1 301 -10 544 112 0 11 chr1 22691530 22691619 -259502045 - L1M3 LINE L1 -751 5583 5496 1689 138 50 0 chr1 22691619 22691879 -259501785 - AluSx SINE Alu -16 296 24 2268 229 30 23 chr1 22691901 22692647 -259501017 - L1M3 LINE L1 -884 5262 4512 359 301 128 19 chr1 22692841 22692997 -259500667 - L2 LINE L2 -349 2965 2793 208 365 46 57 chr1 22693338 22693620 -259500044 + L2 LINE L2 2812 3090 -182 5548 79 51 43 chr1 22693654 22694588 -259499076 - SVA Other Other 0 1386 445 4711 64 29 16 chr1 22694824 22695509 -259498155 - SVA Other Other -688 698 5 2297 119 0 0 chr1 22696893 22697204 -259496460 + AluSx SINE Alu 1 311 -1 1519 198 0 8 chr1 22697465 22697733 -259495931 + AluSx SINE Alu 1 266 -46 1311 181 26 0 chr1 22698379 22698611 -259495053 + Tigger7 DNA MER2_type 30 267 -2220 392 200 53 21 chr1 22698622 22698717 -259494947 + Tigger7 DNA MER2_type 2390 2487 0 521 259 111 0 chr1 22699338 22699500 -259494164 - L2 LINE L2 -40 3273 3094 2306 59 45 0 chr1 22699679 22699969 -259493695 - AluY SINE Alu -8 303 1 733 209 0 8 chr1 22699986 22700120 -259493544 + FLAM_A SINE Alu 1 133 0 1672 196 3 7 chr1 22701491 22701807 -259491857 - AluJo SINE Alu 0 315 1 1816 88 4 4 chr1 22702107 22702371 -259491293 - AluSc SINE Alu 0 303 40 21 36 0 0 chr1 22702455 22702483 -259491181 + AT_rich Low_complexity Low_complexity 1 28 0 1005 150 0 25 chr1 22702823 22702983 -259490681 + FRAM SINE Alu 1 153 -23 1665 174 92 36 chr1 22703036 22703427 -259490237 - MSTB1 LTR MaLR -19 413 1 2021 83 72 7 chr1 22703436 22703713 -259489951 - AluSg SINE Alu -15 295 1 506 223 0 8 chr1 22703713 22703767 -259489897 - L1MB3 LINE L1 -41 6142 6089 1505 199 20 43 chr1 22703767 22704069 -259489595 + AluJo SINE Alu 1 295 -17 506 223 0 8 chr1 22704069 22704144 -259489520 - L1MB3 LINE L1 -94 6089 6014 810 182 56 20 chr1 22704144 22704342 -259489322 - MER46A DNA MER2_type 0 236 32 2614 68 0 0 chr1 22704355 22704666 -259488998 - AluY SINE Alu 0 311 1 1793 160 9 9 chr1 22704671 22705015 -259488649 - L1MB3 LINE L1 -161 6022 5679 222 37 0 0 chr1 22705016 22705043 -259488621 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1907 108 7 42 chr1 22705051 22705337 -259488327 - AluSx SINE Alu -36 276 1 1536 176 99 0 chr1 22705337 22705609 -259488055 - AluJb SINE Alu -13 299 1 886 216 40 46 chr1 22705614 22706220 -259487444 - L1M4c LINE L1 -4066 2318 1622 675 239 0 50 chr1 22706323 22706482 -259487182 + FRAM SINE Alu 1 143 -33 180 0 0 0 chr1 22706482 22706502 -259487162 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 1237 179 113 44 chr1 22706594 22706868 -259486796 - AluJb SINE Alu -19 293 1 990 283 122 42 chr1 22707181 22707424 -259486240 + L2 LINE L2 2558 2780 -533 1600 145 54 85 chr1 22707424 22707811 -259485853 - THE1C LTR MaLR 0 375 1 990 283 122 42 chr1 22707811 22708262 -259485402 + L2 LINE L2 2780 3313 0 24 0 0 0 chr1 22708472 22708496 -259485168 + AT_rich Low_complexity Low_complexity 1 24 0 1616 193 14 14 chr1 22708645 22708941 -259484723 - AluJo SINE Alu -16 296 1 2204 94 24 0 chr1 22708949 22709236 -259484428 - AluSc SINE Alu -15 294 1 245 225 14 0 chr1 22709302 22709373 -259484291 + MER94 DNA DNA 1 72 -62 1076 159 24 0 chr1 22709444 22709614 -259484050 - FRAM SINE Alu -8 168 1 2323 109 3 0 chr1 22709906 22710210 -259483454 + AluSx SINE Alu 5 309 -3 663 133 0 0 chr1 22710585 22710683 -259482981 + AluJ/FLAM SINE Alu 1 98 -214 669 219 16 0 chr1 22710757 22710880 -259482784 + AluJb SINE Alu 1 125 -187 1791 47 5 0 chr1 22710883 22711095 -259482569 - AluY SINE Alu -17 294 82 3764 40 39 2 chr1 22711195 22711713 -259481951 - L1P LINE L1 -1972 4174 3638 7262 43 2 5 chr1 22711713 22713331 -259480333 + L1PA5 LINE L1 4534 6149 -5 22 0 0 0 chr1 22713331 22713353 -259480311 + AT_rich Low_complexity Low_complexity 1 22 0 5153 40 0 5 chr1 22713366 22714027 -259479637 + L1PA5 LINE L1 5519 6176 0 339 258 19 0 chr1 22714082 22714179 -259479485 + FRAM/FAM SINE Alu 1 72 -103 544 164 43 0 chr1 22714298 22714414 -259479250 - MER46C DNA MER2_type -69 269 149 1493 175 12 4 chr1 22714583 22714834 -259478830 - AluJo SINE Alu -59 253 1 2003 172 57 2 chr1 22715337 22715743 -259477921 + L1PB4 LINE L1 5715 6142 -14 642 142 26 0 chr1 22716177 22716290 -259477374 + L1MB3 LINE L1 6059 6174 -9 1239 229 21 11 chr1 22716803 22717179 -259476485 + L1ME1 LINE L1 4758 5137 -1009 829 142 0 31 chr1 22717180 22717307 -259476357 + FLAM_C SINE Alu 1 123 -20 407 255 6 31 chr1 22717316 22717477 -259476187 + L1ME1 LINE L1 5121 5277 -869 1715 184 13 7 chr1 22717481 22717791 -259475873 + AluJb SINE Alu 1 312 0 302 127 16 48 chr1 22717804 22717867 -259475797 + L1ME1 LINE L1 5272 5332 -1012 1531 186 52 4 chr1 22717889 22718158 -259475506 - AluJo SINE Alu -30 282 1 2085 220 24 26 chr1 22718160 22718733 -259474931 + L1ME1 LINE L1 5317 5888 -278 270 98 0 0 chr1 22718734 22718775 -259474889 + Alu SINE Alu 242 282 -20 531 241 46 29 chr1 22718784 22718958 -259474706 + L1ME1 LINE L1 5882 6058 -108 1231 168 62 11 chr1 22719030 22719304 -259474360 + L1MB8 LINE L1 5584 5871 -307 554 246 7 21 chr1 22719711 22719853 -259473811 - MIR SINE MIR -90 172 33 2001 145 6 6 chr1 22721052 22721363 -259472301 + AluSx SINE Alu 1 311 -1 2141 106 20 0 chr1 22721780 22722073 -259471591 + AluSq SINE Alu 1 299 -14 2218 119 0 0 chr1 22723208 22723503 -259470161 + AluSx SINE Alu 1 295 -17 200 125 25 0 chr1 22723503 22723543 -259470121 + (TA)n Simple_repeat Simple_repeat 2 42 0 306 0 0 0 chr1 22723543 22723577 -259470087 + (CA)n Simple_repeat Simple_repeat 2 35 0 549 229 206 56 chr1 22723579 22723696 -259469968 - MIR SINE MIR -15 247 149 2040 121 0 43 chr1 22723696 22724018 -259469646 + AluJb SINE Alu 4 311 -1 549 229 206 56 chr1 22724018 22724114 -259469550 - MIR SINE MIR -113 149 2 1184 197 46 23 chr1 22724182 22724441 -259469223 + AluJo SINE Alu 29 293 -19 1043 150 62 5 chr1 22724531 22724724 -259468940 + MER2 DNA MER2_type 1 204 -141 1302 186 51 41 chr1 22724724 22725048 -259468616 - AluJb SINE Alu 0 312 1 497 149 0 0 chr1 22725082 22725156 -259468508 - AluJ/FLAM SINE Alu -238 74 1 553 290 91 5 chr1 22725157 22725343 -259468321 + L2 LINE L2 3111 3312 -1 2503 50 0 10 chr1 22725694 22725993 -259467671 + AluY SINE Alu 1 296 -15 2140 104 7 3 chr1 22725998 22726296 -259467368 + AluSq SINE Alu 1 299 -14 1071 263 153 84 chr1 22726608 22726803 -259466861 + L1MCc LINE L1 19 199 -6224 2242 95 7 7 chr1 22726803 22727099 -259466565 + AluSq SINE Alu 1 296 -17 1071 263 153 84 chr1 22727099 22727800 -259465864 + L1MCc LINE L1 199 977 -5446 599 254 38 33 chr1 22727808 22727880 -259465784 + L1MCc LINE L1 1115 1185 -5238 607 149 75 0 chr1 22727880 22727987 -259465677 + AluJo/FLAM SINE Alu 2 116 -186 2149 111 0 14 chr1 22727987 22728284 -259465380 - AluSx SINE Alu -4 308 16 599 254 38 33 chr1 22728284 22728423 -259465241 + L1MCc LINE L1 1184 1328 -5095 415 252 99 49 chr1 22728690 22728955 -259464709 + L1MCc LINE L1 1366 1616 -5506 2142 131 0 23 chr1 22728955 22729261 -259464403 + AluSx SINE Alu 1 299 -13 415 252 99 49 chr1 22729261 22729704 -259463960 + L1MCc LINE L1 1616 2314 -4808 1621 167 39 39 chr1 22729704 22730015 -259463649 + AluJb SINE Alu 1 311 -1 415 252 99 49 chr1 22730015 22730071 -259463593 + L1MCc LINE L1 2314 2366 -4756 1587 185 34 20 chr1 22730452 22730744 -259462920 - AluJo SINE Alu -16 296 1 2108 136 0 3 chr1 22730787 22731088 -259462576 - AluSx SINE Alu -12 300 1 2353 84 0 7 chr1 22731230 22731529 -259462135 - AluSg SINE Alu -13 297 1 2089 142 3 3 chr1 22732391 22732702 -259460962 + AluSx SINE Alu 1 311 -1 2159 100 13 10 chr1 22733642 22733951 -259459713 + AluSq SINE Alu 1 310 -3 2734 17 0 0 chr1 22734324 22734625 -259459039 + AluYb8 SINE Alu 1 301 -17 2343 107 0 0 chr1 22734659 22734969 -259458695 + AluSg SINE Alu 1 310 0 1098 166 84 37 chr1 22735247 22735543 -259458121 + MER33 DNA MER1_type 1 310 -14 1712 176 19 7 chr1 22735552 22735859 -259457805 - AluJo SINE Alu -1 311 1 1779 150 16 39 chr1 22735946 22736252 -259457412 + AluJo SINE Alu 1 299 -13 27 0 0 0 chr1 22737548 22737575 -259456089 + AT_rich Low_complexity Low_complexity 1 27 0 568 222 27 0 chr1 22737785 22738130 -259455534 + (CATA)n Simple_repeat Simple_repeat 1 354 0 2100 109 3 26 chr1 22740470 22740773 -259452891 - AluSg SINE Alu -14 296 1 243 88 0 0 chr1 22740867 22740901 -259452763 + (CA)n Simple_repeat Simple_repeat 2 35 0 2416 81 0 0 chr1 22740901 22741197 -259452467 - AluSx SINE Alu -16 296 1 1512 165 100 0 chr1 22741495 22741756 -259451908 + AluJb SINE Alu 1 287 -25 1472 124 171 19 chr1 22742050 22742307 -259451357 - AluSg1 SINE Alu -11 298 3 508 153 9 27 chr1 22743733 22743844 -259449820 - FAM SINE Alu -2 183 75 2147 124 3 0 chr1 22743877 22744184 -259449480 - AluSx SINE Alu -4 308 1 225 0 0 0 chr1 22744926 22744951 -259448713 + (T)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr1 22745771 22745792 -259447872 + AT_rich Low_complexity Low_complexity 1 21 0 2293 80 0 10 chr1 22745833 22746132 -259447532 - AluSg SINE Alu -14 296 1 1598 178 3 25 chr1 22746666 22746952 -259446712 + AluJo SINE Alu 3 282 -30 207 0 0 0 chr1 22746958 22746981 -259446683 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1351 170 180 23 chr1 22747095 22747593 -259446071 + Tigger1 DNA MER2_type 1 643 -1775 720 171 0 0 chr1 22747682 22747793 -259445871 - AluJb SINE Alu -187 125 15 3236 195 78 50 chr1 22747817 22748259 -259445405 + Charlie1 DNA MER1_type 1470 1898 -863 2123 54 68 0 chr1 22748259 22748537 -259445127 + AluSc SINE Alu 1 297 -12 3236 195 78 50 chr1 22748537 22748668 -259444996 + Charlie1 DNA MER1_type 1898 2024 -737 1754 175 3 7 chr1 22748668 22748953 -259444711 - AluJb SINE Alu -28 284 1 3236 195 78 50 chr1 22748953 22749333 -259444331 + Charlie1 DNA MER1_type 2024 2451 -310 365 138 38 25 chr1 22749412 22749492 -259444172 + Charlie1 DNA MER1_type 2444 2524 -237 883 162 78 0 chr1 22749519 22749673 -259443991 - FRAM SINE Alu 0 166 1 296 367 28 18 chr1 22751319 22751428 -259442236 - MIR SINE MIR -129 133 24 180 0 0 0 chr1 22753770 22753790 -259439874 + (GGA)n Simple_repeat Simple_repeat 3 22 0 227 271 186 0 chr1 22754228 22754330 -259439334 + MIR SINE MIR 21 151 -63 626 240 82 20 chr1 22754603 22754734 -259438930 + MER3 DNA MER1_type 2 150 -59 1934 174 0 0 chr1 22754734 22755038 -259438626 - AluSx SINE Alu -8 304 1 626 240 82 20 chr1 22755038 22755102 -259438562 + MER3 DNA MER1_type 150 209 0 4125 134 22 52 chr1 22755452 22755641 -259438023 - Tigger1 DNA MER2_type -1 2417 2224 2242 90 14 0 chr1 22755641 22755931 -259437733 - AluSg SINE Alu -16 294 1 4125 134 22 52 chr1 22755931 22756120 -259437544 - Tigger1 DNA MER2_type -194 2224 2031 1959 142 13 10 chr1 22756120 22756429 -259437235 - AluSx SINE Alu -2 310 1 4125 134 22 52 chr1 22756429 22756740 -259436924 - Tigger1 DNA MER2_type -387 2031 1754 2195 114 3 3 chr1 22756740 22757048 -259436616 - AluSq SINE Alu -5 308 1 4125 134 22 52 chr1 22757048 22757185 -259436479 - Tigger1 DNA MER2_type -664 1754 1614 541 234 9 0 chr1 22757294 22757401 -259436263 - FLAM_A SINE Alu -33 109 2 8542 124 47 31 chr1 22757401 22758961 -259434703 - Tigger1 DNA MER2_type -832 1586 1 540 342 88 53 chr1 22759469 22759550 -259434114 + L3 LINE CR1 611 688 -889 1738 58 22 18 chr1 22759550 22759776 -259433888 - AluY SINE Alu -2 309 83 540 342 88 53 chr1 22759776 22760510 -259433154 + L3 LINE CR1 688 1455 -122 22 0 0 0 chr1 22760784 22760806 -259432858 + AT_rich Low_complexity Low_complexity 1 22 0 325 255 57 28 chr1 22761325 22761431 -259432233 + MIR SINE MIR 95 203 -59 2367 81 0 3 chr1 22761434 22761731 -259431933 + AluSc SINE Alu 1 296 -13 794 147 81 33 chr1 22761757 22761968 -259431696 - L1M3 LINE L1 -709 5474 5254 332 74 0 0 chr1 22761969 22762023 -259431641 - Alu SINE Alu -1 301 248 24 32 0 0 chr1 22762500 22762531 -259431133 + AT_rich Low_complexity Low_complexity 1 31 0 1847 158 3 35 chr1 22762532 22762842 -259430822 - AluJb SINE Alu -12 300 1 2146 124 3 3 chr1 22763268 22763575 -259430089 - AluSx SINE Alu -5 307 1 539 319 93 20 chr1 22764042 22764246 -259429418 - MIR SINE MIR -26 236 18 293 234 117 54 chr1 22764612 22764731 -259428933 - MIR SINE MIR -41 167 53 34 42 0 0 chr1 22764884 22764932 -259428732 + AT_rich Low_complexity Low_complexity 1 48 0 22 0 0 0 chr1 22765814 22765836 -259427828 + AT_rich Low_complexity Low_complexity 1 22 0 333 0 0 0 chr1 22766116 22766153 -259427511 + (CA)n Simple_repeat Simple_repeat 2 38 0 198 91 0 0 chr1 22768497 22768530 -259425134 + (A)n Simple_repeat Simple_repeat 1 33 0 1442 166 0 59 chr1 22770884 22771174 -259422490 - AluJo SINE Alu -3 309 37 714 106 9 26 chr1 22771186 22771299 -259422365 - FLAM_A SINE Alu -12 130 20 254 294 141 25 chr1 22772314 22772477 -259421187 + MIR SINE MIR 20 201 -61 240 296 12 12 chr1 22772495 22772576 -259421088 - MIR SINE MIR -108 154 74 280 214 0 0 chr1 22774805 22774861 -259418803 - MIR SINE MIR -10 252 197 2229 120 0 0 chr1 22775020 22775312 -259418352 + AluSq SINE Alu 3 294 -19 198 0 0 0 chr1 22775418 22775440 -259418224 + (A)n Simple_repeat Simple_repeat 1 22 0 312 227 145 82 chr1 22775454 22775661 -259418003 + L1ME4a LINE L1 5724 5943 -178 27 0 0 0 chr1 22775829 22775856 -259417808 + AT_rich Low_complexity Low_complexity 1 27 0 811 179 80 0 chr1 22775908 22776059 -259417605 + AluJb SINE Alu 136 298 -14 22 35 0 0 chr1 22776110 22776139 -259417525 + AT_rich Low_complexity Low_complexity 1 29 0 2290 99 0 10 chr1 22776239 22776542 -259417122 - AluSx SINE Alu -12 300 1 327 351 101 26 chr1 22776666 22776934 -259416730 + L1M4 LINE L1 4803 5090 -1056 1790 185 3 3 chr1 22777081 22777383 -259416281 - AluJo SINE Alu -10 302 1 2247 82 0 0 chr1 22777575 22777855 -259415809 - AluSg SINE Alu -30 280 1 652 208 7 7 chr1 22777891 22778045 -259415619 + MER3 DNA MER1_type 12 165 -44 1854 124 99 3 chr1 22778067 22778350 -259415314 + AluSg SINE Alu 1 310 0 440 158 108 0 chr1 22778373 22778493 -259415171 - L1MB2 LINE L1 -18 6153 6021 325 288 69 31 chr1 22778816 22778976 -259414688 + Charlie1a DNA MER1_type 5 170 -1285 1500 164 16 52 chr1 22779193 22779560 -259414104 + L1MB8 LINE L1 5825 6178 0 638 192 93 33 chr1 22779736 22779887 -259413777 + FRAM SINE Alu 1 160 -6 335 109 0 0 chr1 22780346 22780392 -259413272 - Alu SINE Alu -255 46 1 1907 148 36 7 chr1 22780440 22780743 -259412921 + AluSq SINE Alu 1 312 -1 264 212 0 0 chr1 22780745 22780811 -259412853 + GA-rich Low_complexity Low_complexity 3 68 0 251 342 52 19 chr1 22780813 22780968 -259412696 - L3 LINE CR1 -969 608 449 1050 110 0 0 chr1 22781323 22781459 -259412205 + AluSq/x SINE Alu 1 136 -176 27 0 0 0 chr1 22782565 22782592 -259411072 + AT_rich Low_complexity Low_complexity 1 27 0 2175 135 0 0 chr1 22782716 22783012 -259410652 + AluSx SINE Alu 1 296 -16 397 326 105 11 chr1 22783090 22783280 -259410384 + MIR SINE MIR 24 231 -31 2835 110 32 6 chr1 22783516 22783989 -259409675 + L1P4 LINE L1 5280 5764 -401 1412 189 56 56 chr1 22784099 22784475 -259409189 - L1MD2 LINE L1 -69 6290 5915 592 224 128 5 chr1 22784496 22784692 -259408972 + Charlie1a DNA MER1_type 332 551 -904 232 163 0 0 chr1 22784740 22784783 -259408881 + Charlie1a DNA MER1_type 1408 1450 -5 2503 204 29 0 chr1 22785406 22785931 -259407733 + L1PBa LINE L1 1 540 -6323 25 0 0 0 chr1 22785996 22786021 -259407643 + AT_rich Low_complexity Low_complexity 1 25 0 320 315 24 24 chr1 22786374 22786501 -259407163 + L1M4c LINE L1 540 666 -5718 2245 107 3 0 chr1 22786597 22786887 -259406777 + AluSx SINE Alu 1 291 -21 1944 140 3 6 chr1 22787020 22787335 -259406329 - L1PA15 LINE L1 0 6165 5852 2075 134 3 3 chr1 22787345 22787644 -259406020 - AluSx SINE Alu -13 299 1 1269 206 57 73 chr1 22787645 22788204 -259405460 + L1M4c LINE L1 908 1457 -4927 432 187 168 0 chr1 22788204 22788311 -259405353 + FLAM_C SINE Alu 1 125 -18 478 217 89 19 chr1 22788311 22788468 -259405196 + L1M4c LINE L1 1435 1602 -4782 2524 102 27 35 chr1 22788578 22788902 -259404762 + L1PA15 LINE L1 5746 6068 -97 2159 116 3 22 chr1 22788902 22789213 -259404451 + AluSx SINE Alu 1 305 -7 2524 102 27 35 chr1 22789213 22789292 -259404372 + L1PA15 LINE L1 6068 6146 -19 25 51 0 0 chr1 22789294 22789333 -259404331 + AT_rich Low_complexity Low_complexity 1 39 0 1710 175 3 18 chr1 22789542 22789828 -259403836 + AluJo SINE Alu 1 282 -30 826 355 139 16 chr1 22789857 22790618 -259403046 - L2 LINE L2 -445 2869 2015 233 233 50 0 chr1 22790838 22790898 -259402766 + MIR SINE MIR 190 252 -10 1860 162 23 7 chr1 22790931 22791233 -259402431 - AluSx SINE Alu -5 307 1 1089 173 0 0 chr1 22791437 22791605 -259402059 - AluJb SINE Alu -9 303 136 1570 176 19 42 chr1 22791631 22791938 -259401726 + AluJo SINE Alu 1 300 -12 2314 105 3 0 chr1 22792383 22792687 -259400977 + AluSx SINE Alu 1 305 -7 1799 165 7 7 chr1 22792695 22792986 -259400678 + AluSx SINE Alu 1 291 -21 762 187 0 0 chr1 22793124 22793247 -259400417 + FLAM_C SINE Alu 1 123 -10 1979 155 0 10 chr1 22793552 22793849 -259399815 - AluSx SINE Alu -18 294 1 2109 123 7 7 chr1 22794055 22794357 -259399307 - AluSx SINE Alu -10 302 1 450 85 0 0 chr1 22794357 22794416 -259399248 - AluSg/x SINE Alu -176 134 76 1246 153 5 10 chr1 22794416 22794625 -259399039 - AluSx SINE Alu -100 212 5 1758 193 52 27 chr1 22794747 22795228 -259398436 + L1MB3 LINE L1 5684 6176 -7 219 175 0 25 chr1 22795253 22795293 -259398371 - MIR SINE MIR -87 121 83 547 252 53 20 chr1 22795814 22795965 -259397699 - AluJo/FRAM SINE Alu -20 292 137 1720 148 44 7 chr1 22795967 22796238 -259397426 - AluSx SINE Alu -31 281 1 719 183 8 0 chr1 22796405 22796531 -259397133 + FLAM_C SINE Alu 1 127 -6 1605 159 9 59 chr1 22796764 22797084 -259396580 - AluJo SINE Alu -2 310 7 2083 144 19 27 chr1 22797136 22797503 -259396161 + THE1B LTR MaLR 1 364 0 254 157 45 56 chr1 22797547 22797636 -259396028 - MER33 DNA MER1_type -14 349 262 * 478 187 10 22 chr1 22797635 22797751 -259395913 - MER33 DNA MER1_type -250 74 1 2063 134 7 0 chr1 22797820 22798133 -259395531 + AluSx SINE Alu 1 315 0 327 336 49 16 chr1 22800440 22800562 -259393102 - MIR SINE MIR -90 172 47 1279 185 53 69 chr1 22800722 22801025 -259392639 + AluJo SINE Alu 1 298 -14 2609 179 69 91 chr1 22802219 22803368 -259390296 + MER52C LTR ERV1 194 1276 -2 1967 158 3 3 chr1 22803511 22803814 -259389850 + AluJb SINE Alu 1 303 -9 196 188 141 16 chr1 22804245 22804309 -259389355 - L2 LINE L2 -5 3308 3237 338 186 395 16 chr1 22804800 22804924 -259388740 + MER5B DNA MER1_type 8 178 0 1615 214 17 30 chr1 22805813 22806394 -259387270 + L1M4 LINE L1 4590 5124 -1022 615 193 42 78 chr1 22806405 22806597 -259387067 + AluSc SINE Alu 112 296 -13 955 145 16 5 chr1 22806600 22806854 -259386810 + L1M4 LINE L1 5170 5425 -743 2018 197 91 13 chr1 22806916 22807498 -259386166 + MER21B LTR ERV1 2 655 -208 2461 144 46 5 chr1 22807616 22808033 -259385631 + MER57B LTR ERV1 1 434 0 901 153 0 0 chr1 22808168 22808299 -259385365 - FLAM_C SINE Alu -12 131 1 1713 183 33 0 chr1 22808887 22809188 -259384476 - AluJb SINE Alu -1 311 1 1521 150 88 11 chr1 22810520 22810794 -259382870 + AluJb SINE Alu 1 295 -17 1336 166 0 14 chr1 22811548 22811759 -259381905 - AluJb SINE Alu -2 310 103 1388 194 51 17 chr1 22811762 22812055 -259381609 + AluJo SINE Alu 5 307 -5 444 300 62 48 chr1 22813861 22814088 -259379576 - MIR SINE MIR -22 240 11 2098 178 112 20 chr1 22814139 22814685 -259378979 + LTR48 LTR ERV1 192 787 0 1266 260 109 25 chr1 22815203 22815733 -259377931 + LTR41 LTR ERVL 3 577 -196 709 299 15 15 chr1 22815759 22816023 -259377641 + ERVL LTR ERVL 2980 3243 -2521 408 241 241 10 chr1 22816079 22816274 -259377390 + LTR41 LTR ERVL 423 662 -111 1392 162 0 45 chr1 22816578 22816825 -259376839 + AluJo SINE Alu 71 306 -6 517 247 202 4 chr1 22818164 22818411 -259375253 + L1ME1 LINE L1 5866 6161 -5 1430 194 13 61 chr1 22818480 22818790 -259374874 + AluJo SINE Alu 1 295 -17 322 274 18 9 chr1 22818802 22818915 -259374749 + (CATATA)n Simple_repeat Simple_repeat 6 119 0 380 198 87 8 chr1 22819316 22819442 -259374222 - Charlie4 DNA MER1_type -32 1929 1794 5859 61 24 32 chr1 22819454 22820329 -259373335 + SVA Other Other 1 868 -518 1926 127 28 10 chr1 22821002 22821293 -259372371 + AluSq SINE Alu 1 296 -17 1905 129 0 0 chr1 22821460 22821750 -259371914 + AluSx SINE Alu 21 310 0 1072 199 79 14 chr1 22822376 22822592 -259371072 + AluJo SINE Alu 1 230 -82 2005 127 0 56 chr1 22823995 22824318 -259369346 - AluSx SINE Alu -7 305 1 3215 48 5 11 chr1 22824450 22824888 -259368776 - L1P LINE L1 -1594 4552 4118 6649 56 19 42 chr1 22825095 22826071 -259367593 + SVA Other Other 433 1386 0 25 51 0 0 chr1 22826997 22827036 -259366628 + AT_rich Low_complexity Low_complexity 1 39 0 1230 260 55 11 chr1 22828598 22829033 -259364631 + L1ME3A LINE L1 5496 5949 -221 258 314 6 51 chr1 22829819 22829994 -259363670 - Charlie8 DNA MER1_type -2154 263 97 958 185 6 12 chr1 22830109 22830282 -259363382 - AluJ SINE Alu -12 300 129 830 188 0 0 chr1 22830320 22830453 -259363211 - AluJ SINE Alu -169 133 1 21 36 0 0 chr1 22830558 22830586 -259363078 + AT_rich Low_complexity Low_complexity 1 28 0 1673 167 21 14 chr1 22831546 22831834 -259361830 - AluJb SINE Alu -22 290 1 389 309 8 0 chr1 22831836 22831962 -259361702 + MLT1E1 LTR MaLR 4 130 -524 680 222 43 101 chr1 22832026 22832214 -259361450 - L2 LINE L2 -503 2811 2640 746 223 60 6 chr1 22832214 22832380 -259361284 + FAM SINE Alu 1 175 0 680 222 43 101 chr1 22832380 22832448 -259361216 - L2 LINE L2 -674 2640 2570 610 268 55 11 chr1 22832500 22832683 -259360981 - L2 LINE L2 0 3313 3123 945 175 85 0 chr1 22832738 22832949 -259360715 - MER46A DNA MER2_type -7 229 1 383 315 9 0 chr1 22833009 22833117 -259360547 - L2 LINE L2 -976 2338 2230 2304 121 3 0 chr1 22833326 22833631 -259360033 - AluSx SINE Alu -6 306 1 1894 182 0 3 chr1 22833642 22833944 -259359720 - AluJo SINE Alu -11 301 1 225 210 0 16 chr1 22834138 22834186 -259359478 + (TA)n Simple_repeat Simple_repeat 2 50 -12 2205 107 3 3 chr1 22834186 22834475 -259359189 - AluSx SINE Alu -23 289 1 225 210 0 16 chr1 22834475 22834488 -259359176 + (TA)n Simple_repeat Simple_repeat 50 62 0 997 182 0 12 chr1 22834636 22834806 -259358858 - AluJb SINE Alu -12 300 133 1901 117 0 60 chr1 22835312 22835612 -259358052 - AluSx SINE Alu -30 282 1 783 205 70 12 chr1 22836973 22837144 -259356520 + AluJo SINE Alu 112 292 -20 320 317 191 0 chr1 22837184 22837367 -259356297 + MIR SINE MIR 22 239 -23 881 167 172 11 chr1 22837561 22837741 -259355923 + AluJb SINE Alu 83 291 -21 214 178 0 0 chr1 22837879 22837924 -259355740 + A-rich Low_complexity Low_complexity 1 45 0 2258 134 0 0 chr1 22838704 22839017 -259354647 - AluSq SINE Alu 0 313 1 464 108 0 0 chr1 22839453 22839527 -259354137 + Alu SINE Alu 233 306 -3 2208 94 19 23 chr1 22839677 22839984 -259353680 + AluSx SINE Alu 3 308 -4 384 247 0 0 chr1 22840072 22840157 -259353507 + MIR SINE MIR 168 252 -10 712 261 53 0 chr1 22840164 22840352 -259353312 + MIR SINE MIR 44 241 -21 1122 196 54 0 chr1 22840379 22840603 -259353061 - MER46A DNA MER2_type 0 236 1 201 304 0 25 chr1 22841043 22841122 -259352542 + L2 LINE L2 3191 3267 -5 1684 186 0 35 chr1 22842705 22843016 -259350648 + AluJo SINE Alu 1 300 -12 1927 113 92 0 chr1 22843134 22843416 -259350248 + AluSg SINE Alu 1 308 -2 714 173 0 16 chr1 22843834 22843961 -259349703 + FLAM_C SINE Alu 1 125 -18 2219 82 4 0 chr1 22843970 22844284 -259349380 - AluY SINE Alu 0 315 1 25 0 0 0 chr1 22844284 22844309 -259349355 + AT_rich Low_complexity Low_complexity 1 25 0 693 228 73 56 chr1 22844464 22844696 -259348968 - MIR SINE MIR -19 243 8 208 290 50 30 chr1 22844760 22844860 -259348804 + L2 LINE L2 2716 2817 -497 509 154 0 0 chr1 22844898 22844989 -259348675 - MER3 DNA MER1_type -80 129 86 231 331 37 59 chr1 22845028 22845164 -259348500 + L2 LINE L2 2909 3041 -272 637 184 0 18 chr1 22845391 22845505 -259348159 - AluJb SINE Alu -16 296 185 21 0 0 0 chr1 22845655 22845676 -259347988 + AT_rich Low_complexity Low_complexity 1 21 0 741 213 31 76 chr1 22845722 22845947 -259347717 - MER20 DNA MER1_type -4 215 1 24 0 0 0 chr1 22846110 22846134 -259347530 + AT_rich Low_complexity Low_complexity 1 24 0 804 155 14 27 chr1 22846373 22846521 -259347143 + AluJo SINE Alu 3 148 -164 3058 206 17 31 chr1 22846527 22846869 -259346795 + L1MA4A LINE L1 2617 2962 -3886 1993 128 0 25 chr1 22846869 22847190 -259346474 + AluSq SINE Alu 1 313 0 3058 206 17 31 chr1 22847190 22847994 -259345670 + L1MA4A LINE L1 2962 3744 -3104 402 134 12 12 chr1 22848026 22848108 -259345556 + AluS SINE Alu 226 307 -3 3831 170 38 78 chr1 22848108 22848731 -259344933 + L1MA4A LINE L1 5412 6059 -946 1628 168 11 14 chr1 22848731 22849016 -259344648 + AluJo SINE Alu 23 306 -6 3831 170 38 78 chr1 22849016 22849190 -259344474 + L1MA4A LINE L1 6059 6238 -767 2344 88 3 3 chr1 22849190 22849498 -259344166 + AluSp SINE Alu 1 308 -5 3831 170 38 78 chr1 22849498 22850294 -259343370 + L1MA4A LINE L1 6238 6956 -49 2181 128 0 0 chr1 22850294 22850592 -259343072 + AluSx SINE Alu 1 298 -14 3831 170 38 78 chr1 22850592 22850630 -259343034 + L1MA4A LINE L1 6956 6994 -11 355 332 71 33 chr1 22850711 22850922 -259342742 + L3 LINE CR1 494 712 -865 1709 189 0 50 chr1 22850977 22851295 -259342369 + AluJo SINE Alu 1 302 -10 1406 154 0 69 chr1 22851315 22851463 -259342201 + AluJo SINE Alu 1 127 -185 2136 99 7 0 chr1 22851463 22851756 -259341908 + AluSx SINE Alu 3 297 -15 1406 154 0 69 chr1 22851756 22851854 -259341810 + AluJo SINE Alu 127 230 -82 394 315 56 51 chr1 23052487 23052684 -259140980 + MIR SINE MIR 20 217 -45 1791 152 3 7 chr1 23052758 23053060 -259140604 + AluSp SINE Alu 1 301 -12 1588 197 3 0 chr1 23053588 23053893 -259139771 - AluSx SINE Alu -1 311 6 1331 242 3 0 chr1 23053898 23054204 -259139460 - AluJb SINE Alu -3 309 3 267 223 102 102 chr1 23054714 23054920 -259138744 + L1ME3A LINE L1 5965 6170 0 234 261 154 8 chr1 23054932 23055062 -259138602 - L2 LINE L2 -2466 848 700 321 248 113 7 chr1 23055076 23055217 -259138447 + Charlie4 DNA MER1_type 105 260 -1701 1077 189 42 4 chr1 23055237 23055475 -259138189 + AluSx SINE Alu 1 247 -65 927 193 0 0 chr1 23057008 23057179 -259136485 + AluSg/x SINE Alu 139 309 -3 467 161 85 34 chr1 23058274 23058392 -259135272 - MER53 DNA DNA -65 124 1 301 109 0 0 chr1 23058653 23058699 -259134965 + L2 LINE L2 3267 3312 -1 306 260 294 0 chr1 23059842 23059988 -259133676 + MIR SINE MIR 7 195 -67 201 267 0 0 chr1 23060629 23060674 -259132990 + GA-rich Low_complexity Low_complexity 1 45 0 196 259 74 25 chr1 23061195 23061276 -259132388 + MIR SINE MIR 62 146 -62 420 216 30 52 chr1 23061412 23061546 -259132118 + MIR3 SINE MIR 11 141 -67 1929 140 0 3 chr1 23061573 23061887 -259131777 - AluSq SINE Alu 0 313 1 740 147 56 0 chr1 23062330 23062473 -259131191 - L1MB8 LINE L1 -212 5966 5816 3491 199 51 14 chr1 23062487 23063467 -259130197 - L1MB5 LINE L1 -16 6158 5260 2127 100 3 6 chr1 23063467 23063778 -259129886 - AluSx SINE Alu -2 310 1 1135 193 51 29 chr1 23063786 23063961 -259129703 - AluJo SINE Alu -8 304 119 1833 89 28 98 chr1 23063961 23064287 -259129377 + AluYb8 SINE Alu 2 304 -14 1135 193 51 29 chr1 23064287 23064386 -259129278 - AluJo SINE Alu -193 119 24 705 204 0 8 chr1 23064420 23064552 -259129112 - FLAM_A SINE Alu 0 133 3 1341 185 47 59 chr1 23064552 23064868 -259128796 - L1MB8 LINE L1 -579 5605 5282 2163 96 0 52 chr1 23064868 23065192 -259128472 - AluSg SINE Alu -3 307 1 1341 185 47 59 chr1 23065192 23065337 -259128327 - L1MB8 LINE L1 -902 5282 5137 1384 208 14 14 chr1 23065369 23065648 -259128016 - AluJo SINE Alu -29 283 5 1320 171 0 122 chr1 23065742 23066069 -259127595 - AluJo SINE Alu -14 288 2 2242 82 24 0 chr1 23066072 23066366 -259127298 - AluSq SINE Alu -12 301 1 255 61 0 0 chr1 23066412 23066445 -259127219 + (T)n Simple_repeat Simple_repeat 1 33 0 735 170 0 0 chr1 23066471 23066583 -259127081 - FLAM_C SINE Alu -18 125 14 464 295 23 29 chr1 23066880 23067053 -259126611 - L1MC/D LINE L1 -2162 5646 5475 821 188 0 0 chr1 23067143 23067276 -259126388 - FLAM_A SINE Alu 0 133 1 1746 145 35 11 chr1 23067483 23067766 -259125898 + AluSx SINE Alu 1 290 -22 816 189 0 0 chr1 23067799 23067942 -259125722 + AluJb SINE Alu 157 299 -13 1826 125 14 4 chr1 23068001 23068328 -259125336 - AluSx SINE Alu 0 330 1 2181 113 0 0 chr1 23068329 23068631 -259125033 - AluSc SINE Alu -7 302 1 1595 145 0 126 chr1 23068813 23069182 -259124482 - AluSx SINE Alu 0 328 1 402 289 176 53 chr1 23069185 23069524 -259124140 - L1ME LINE L1 -380 5782 5381 720 148 23 16 chr1 23069524 23069652 -259124012 - FLAM_C SINE Alu 0 133 5 402 289 176 53 chr1 23069652 23069727 -259123937 - L1ME LINE L1 -781 5381 5317 2090 115 10 0 chr1 23069754 23070059 -259123605 - AluSg SINE Alu -2 308 1 2094 126 0 16 chr1 23070080 23070397 -259123267 - AluSx SINE Alu 0 312 1 2352 68 0 0 chr1 23070400 23070695 -259122969 - AluY SINE Alu -16 295 1 509 292 101 88 chr1 23070761 23071091 -259122573 - L1ME LINE L1 -984 5162 4823 2108 120 7 0 chr1 23071091 23071399 -259122265 - AluSp SINE Alu -3 310 1 509 292 101 88 chr1 23071399 23071534 -259122130 - L1ME LINE L1 -1323 4823 4691 91 19 0 0 chr1 23071545 23071650 -259122014 + AT_rich Low_complexity Low_complexity 1 105 0 2118 106 0 0 chr1 23071650 23071942 -259121722 - AluSg SINE Alu -17 293 2 897 249 176 7 chr1 23071945 23072324 -259121340 + L2 LINE L2 2771 3207 -106 800 216 22 17 chr1 23072338 23072519 -259121145 - AluJo SINE Alu -13 299 118 408 246 95 32 chr1 23072578 23072704 -259120960 - MIR SINE MIR -58 204 71 318 307 23 74 chr1 23072701 23072877 -259120787 + MIR SINE MIR 83 249 -13 * 807 228 0 0 chr1 23072883 23073074 -259120590 + AluSg/x SINE Alu 135 312 0 2299 87 0 0 chr1 23073181 23073480 -259120184 - AluSg1 SINE Alu -10 299 1 484 153 0 0 chr1 23073480 23073552 -259120112 - AluS SINE Alu -17 293 222 365 285 54 23 chr1 23073640 23073770 -259119894 + L2 LINE L2 2925 3058 -214 204 118 29 0 chr1 23073808 23073842 -259119822 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 712 164 84 49 chr1 23073880 23073962 -259119702 - MER69 DNA AcHobo -11 2515 2437 2202 119 0 0 chr1 23073962 23074264 -259119400 + AluSx SINE Alu 1 302 -10 712 164 84 49 chr1 23074264 23074407 -259119257 - MER69 DNA AcHobo -89 2437 2282 798 179 0 22 chr1 23074407 23074541 -259119123 - FLAM_C SINE Alu -11 132 2 638 195 45 127 chr1 23074551 23074610 -259119054 - MER69 DNA AcHobo -242 2284 2222 1852 161 0 16 chr1 23074610 23074915 -259118749 - AluJo SINE Alu -10 302 3 2050 119 0 7 chr1 23074924 23075226 -259118438 - AluSg SINE Alu -10 300 1 638 195 45 127 chr1 23075226 23075306 -259118358 - MER69 DNA AcHobo -312 2214 2129 2394 78 0 0 chr1 23075306 23075615 -259118049 - AluY SINE Alu -2 309 1 638 195 45 127 chr1 23075615 23075756 -259117908 - MER69 DNA AcHobo -397 2129 2017 1240 251 138 5 chr1 23075760 23076150 -259117514 - MER69 DNA AcHobo -658 568 127 1928 121 10 7 chr1 23076152 23076442 -259117222 - AluSx SINE Alu 0 312 22 2149 102 0 37 chr1 23076485 23076809 -259116855 - AluSx SINE Alu 0 312 1 995 138 0 0 chr1 23076809 23076954 -259116710 - AluSq/x SINE Alu -167 145 1 282 245 0 64 chr1 23076981 23077047 -259116617 - MER4D LTR ERV1 -70 802 733 750 128 13 77 chr1 23077047 23077091 -259116573 - L1MB2 LINE L1 -7 6164 6119 1329 143 33 85 chr1 23077091 23077305 -259116359 - AluJo SINE Alu -21 291 96 1762 80 84 8 chr1 23077305 23077567 -259116097 - AluSx SINE Alu -10 302 21 1329 143 33 85 chr1 23077567 23077659 -259116005 - AluJo SINE Alu -216 96 1 750 128 13 77 chr1 23077659 23077770 -259115894 - L1MB2 LINE L1 -52 6119 6019 282 245 0 64 chr1 23077770 23077797 -259115867 - MER4D LTR ERV1 -139 733 715 342 77 0 0 chr1 23077806 23077858 -259115806 + Alu SINE Alu 1 52 -250 316 243 216 27 chr1 23078085 23078217 -259115447 + MIR SINE MIR 36 142 -120 708 184 85 99 chr1 23078217 23078305 -259115359 - MER3 DNA MER1_type 0 209 121 2018 99 6 51 chr1 23078305 23078481 -259115183 - AluSg SINE Alu -12 298 141 2098 121 0 13 chr1 23078481 23078795 -259114869 - AluY SINE Alu -1 310 1 2018 99 6 51 chr1 23078795 23078930 -259114734 - AluSg SINE Alu -169 141 1 2353 90 0 3 chr1 23078934 23079246 -259114418 - AluSx SINE Alu 0 312 2 708 184 85 99 chr1 23079246 23079364 -259114300 - MER3 DNA MER1_type -91 118 1 316 243 216 27 chr1 23079364 23079379 -259114285 + MIR SINE MIR 142 211 -51 207 407 0 0 chr1 23080326 23080412 -259113252 - MIR SINE MIR -74 134 49 437 262 182 33 chr1 23080576 23080878 -259112786 + L2 LINE L2 2882 3228 -85 261 394 81 5 chr1 23080947 23081168 -259112496 - MIR SINE MIR -2 260 23 2012 145 0 0 chr1 23082014 23082310 -259111354 - AluSx SINE Alu -15 297 2 194 175 108 133 chr1 23082314 23082434 -259111230 - MIR SINE MIR -109 153 37 325 233 111 0 chr1 23082451 23082541 -259111123 + MIR3 SINE MIR 101 200 -8 565 200 25 8 chr1 23082717 23082837 -259110827 - MIR SINE MIR -74 188 67 228 242 10 40 chr1 23083136 23083235 -259110429 + (GGCTG)n Simple_repeat Simple_repeat 2 97 0 383 255 148 6 chr1 23083814 23083978 -259109686 - MIR3 SINE MIR -52 156 21 478 305 77 37 chr1 23084019 23084222 -259109442 + MIR SINE MIR 35 244 -18 334 223 184 10 chr1 23084318 23084421 -259109243 - L2 LINE L2 0 3313 3193 241 227 320 21 chr1 23084498 23084595 -259109069 - MIR SINE MIR -58 150 25 2058 81 60 3 chr1 23085880 23086165 -259107499 - AluSg SINE Alu -9 301 1 739 232 41 52 chr1 23086956 23087150 -259106514 - MIR SINE MIR -10 252 61 1636 126 85 7 chr1 23087195 23087465 -259106199 + AluJo SINE Alu 1 291 -21 339 258 129 0 chr1 23088872 23088965 -259104699 + MIR SINE MIR 36 140 -68 186 43 0 0 chr1 23088969 23088992 -259104672 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 1581 154 4 0 chr1 23088993 23089239 -259104425 - AluJo SINE Alu -24 288 42 2172 88 0 0 chr1 23089256 23089540 -259104124 - AluSq SINE Alu -20 293 10 207 281 108 14 chr1 23089551 23089690 -259103974 - L2 LINE L2 -274 3039 2888 297 68 0 0 chr1 23089728 23089772 -259103892 + (TG)n Simple_repeat Simple_repeat 2 45 0 326 42 21 0 chr1 23089805 23089853 -259103811 + (TG)n Simple_repeat Simple_repeat 2 50 0 211 338 13 13 chr1 23089856 23089933 -259103731 - L2 LINE L2 -498 2816 2740 354 317 79 62 chr1 23090573 23090989 -259102675 + L2 LINE L2 2850 3272 0 2222 77 3 13 chr1 23091349 23091685 -259101979 - AluSq SINE Alu 0 313 1 220 251 162 0 chr1 23091833 23091958 -259101706 + MIR SINE MIR 44 185 -63 232 211 145 13 chr1 23091988 23092064 -259101600 - L2 LINE L2 -19 3294 3209 230 247 79 22 chr1 23092156 23092245 -259101419 - MIR3 SINE MIR -103 105 12 538 284 34 10 chr1 23092389 23092630 -259101034 + MIR SINE MIR 10 254 -8 262 204 0 0 chr1 23093791 23093840 -259099824 + MIR SINE MIR 109 157 -105 963 272 15 15 chr1 23093840 23094101 -259099563 - MER46C DNA MER2_type 0 338 78 1697 111 8 0 chr1 23094109 23094343 -259099321 - AluSx SINE Alu -20 292 57 204 286 0 78 chr1 23094916 23094993 -259098671 + MIR SINE MIR 28 98 -110 357 287 277 0 chr1 23095408 23095610 -259098054 + MIR SINE MIR 5 262 0 191 284 40 14 chr1 23096481 23096555 -259097109 + MER5A DNA MER1_type 96 171 -18 237 200 235 35 chr1 23096918 23097033 -259096631 - L2 LINE L2 0 3313 3176 634 247 240 17 chr1 23097118 23097414 -259096250 - L1ME1 LINE L1 -6 6160 5799 309 292 21 0 chr1 23097415 23097511 -259096153 - L2 LINE L2 -234 3038 2941 332 298 24 0 chr1 23098921 23099005 -259094659 + L2 LINE L2 3217 3302 -11 504 314 17 9 chr1 23101015 23101243 -259092421 + CT-rich Low_complexity Low_complexity 1 229 0 214 209 37 15 chr1 23101194 23101328 -259092336 + (TCTCTG)n Simple_repeat Simple_repeat 2 138 0 * 230 234 39 26 chr1 23101447 23101524 -259092140 + CT-rich Low_complexity Low_complexity 2 79 0 2099 91 57 17 chr1 23102109 23102407 -259091257 - AluSx SINE Alu -2 310 1 1702 166 0 0 chr1 23103122 23103387 -259090277 + AluJo SINE Alu 34 298 -14 353 302 56 16 chr1 23103423 23103549 -259090115 - L2 LINE L2 -4 3268 3138 282 233 67 113 chr1 23103566 23103716 -259089948 - MIR SINE MIR -15 247 105 288 294 92 8 chr1 23103818 23103937 -259089727 - L2 LINE L2 -166 3106 2978 338 320 33 8 chr1 23105062 23105184 -259088480 - L3 LINE CR1 -71 1506 1382 379 337 59 25 chr1 23105311 23105513 -259088151 - MIR SINE MIR -2 260 52 324 267 48 19 chr1 23105562 23105667 -259087997 - MIR SINE MIR -132 130 23 332 345 126 34 chr1 23105694 23105900 -259087764 - L3 LINE CR1 -343 1234 1010 1190 123 0 0 chr1 23105909 23106080 -259087584 + FRAM SINE Alu 1 170 -6 961 120 0 0 chr1 23106394 23106527 -259087137 + FLAM_C SINE Alu 1 133 0 207 284 23 23 chr1 23107816 23107904 -259085760 + C-rich Low_complexity Low_complexity 2 89 0 278 229 10 0 chr1 23108195 23108291 -259085373 + (TCCA)n Simple_repeat Simple_repeat 3 99 0 634 316 35 13 chr1 23110692 23110923 -259082741 + MIR SINE MIR 22 257 -5 298 270 106 15 chr1 23110979 23111134 -259082530 + MIR3 SINE MIR 19 187 -21 208 379 73 16 chr1 23111138 23111262 -259082402 + MIR SINE MIR 2 132 -130 1865 148 0 23 chr1 23111372 23111677 -259081987 + AluJo SINE Alu 1 298 -14 240 308 86 12 chr1 23111791 23111931 -259081733 - MIR SINE MIR -67 141 27 529 337 23 0 chr1 23112077 23112252 -259081412 + L3 LINE CR1 1266 1444 -133 380 235 168 0 chr1 23112260 23112379 -259081285 - MER3 DNA MER1_type 0 209 71 256 36 0 91 chr1 23112378 23112433 -259081231 + MADE1 DNA Mariner 31 80 0 * 251 297 14 0 chr1 23112433 23112503 -259081161 - MER3 DNA MER1_type -138 71 1 423 0 0 0 chr1 23112553 23112600 -259081064 + (TG)n Simple_repeat Simple_repeat 2 48 0 303 272 65 0 chr1 23112654 23112746 -259080918 - MIR SINE MIR -48 214 117 2196 125 0 0 chr1 23113028 23113339 -259080325 - AluSx SINE Alu 0 312 2 272 304 123 34 chr1 23113858 23114062 -259079602 + L2 LINE L2 3027 3248 -24 837 321 146 40 chr1 23114958 23115047 -259078617 + L3 LINE CR1 923 1001 -576 2269 104 0 0 chr1 23115047 23115344 -259078320 + AluSx SINE Alu 1 297 -15 837 321 146 40 chr1 23115344 23115830 -259077834 + L3 LINE CR1 1001 1559 -18 344 316 156 8 chr1 23116044 23116205 -259077459 + MIR3 SINE MIR 3 182 -63 193 213 0 21 chr1 23116991 23117038 -259076626 + MIR SINE MIR 20 65 -143 290 333 27 9 chr1 23117073 23117184 -259076480 - MIR SINE MIR -55 207 95 2292 89 7 0 chr1 23117202 23117504 -259076160 + AluSq SINE Alu 1 304 -9 595 261 106 24 chr1 23117538 23117745 -259075919 + MIR SINE MIR 26 249 -13 2299 92 0 6 chr1 23117908 23118222 -259075442 - AluSx SINE Alu 0 312 1 194 274 75 82 chr1 23118757 23118903 -259074761 - L2 LINE L2 -260 3012 2868 273 271 198 10 chr1 23119437 23119533 -259074131 + MIR SINE MIR 62 175 -87 418 204 124 45 chr1 23119597 23119798 -259073866 - LTR16A1 LTR ERVL -99 358 142 196 392 11 39 chr1 23119806 23119987 -259073677 + MIR SINE MIR 86 261 -1 523 289 66 20 chr1 23120686 23120883 -259072781 + MIR SINE MIR 51 256 -6 233 276 112 0 chr1 23121363 23121461 -259072203 + MIR3 SINE MIR 48 156 -52 311 229 24 36 chr1 23121710 23121793 -259071871 + MIR SINE MIR 103 184 -78 239 344 13 18 chr1 23122911 23123061 -259070603 + MIR SINE MIR 11 243 -19 550 279 175 0 chr1 23123229 23123412 -259070252 - MIR SINE MIR -1 261 47 1987 133 0 7 chr1 23123450 23123743 -259069921 + AluJb SINE Alu 15 305 -7 219 154 26 0 chr1 23123802 23123841 -259069823 + (TGG)n Simple_repeat Simple_repeat 2 41 0 230 79 0 26 chr1 23125463 23125501 -259068163 + (TCC)n Simple_repeat Simple_repeat 2 38 0 389 293 134 18 chr1 23126144 23126308 -259067356 - MIR3 SINE MIR -3 205 23 209 267 0 0 chr1 23126527 23126572 -259067092 + (CAT)n Simple_repeat Simple_repeat 1 45 0 2203 104 3 0 chr1 23126660 23126957 -259066707 + AluSx SINE Alu 1 298 -14 2043 132 7 0 chr1 23126968 23127271 -259066393 + AluSq SINE Alu 1 305 -8 669 292 49 5 chr1 23127426 23127611 -259066053 - MIR SINE MIR -62 200 8 1251 178 28 91 chr1 23127615 23127935 -259065729 + AluJo SINE Alu 3 302 0 303 311 22 22 chr1 23128326 23128461 -259065203 - MLT1K LTR MaLR -6 582 448 397 312 64 23 chr1 23128545 23128763 -259064901 - MLT1K LTR MaLR -359 229 3 507 263 63 23 chr1 23130278 23130453 -259063211 - MIR SINE MIR -72 190 9 835 160 8 0 chr1 23131142 23131273 -259062391 - FLAM_C SINE Alu -1 132 1 602 171 111 0 chr1 23131280 23131397 -259062267 - FLAM_A SINE Alu -3 130 1 2372 77 7 3 chr1 23131597 23131907 -259061757 - AluY SINE Alu 0 311 1 2082 101 50 0 chr1 23131907 23132205 -259061459 - AluSq SINE Alu 0 313 1 526 290 13 18 chr1 23132319 23132384 -259061280 - L1ME LINE L1 -327 5794 5730 2264 112 3 3 chr1 23132384 23132696 -259060968 - AluSx SINE Alu 0 312 1 526 290 13 18 chr1 23132696 23132854 -259060810 - L1ME LINE L1 -391 5730 5572 820 102 79 31 chr1 23133495 23133622 -259060042 - FLAM_C SINE Alu 0 133 1 252 273 41 41 chr1 23133641 23133762 -259059902 + L2 LINE L2 2927 3047 -225 * 465 336 0 8 chr1 23133740 23133871 -259059793 - L2 LINE L2 0 3272 3143 496 313 60 34 chr1 23133980 23134213 -259059451 + L2 LINE L2 3022 3260 -12 2120 98 21 0 chr1 23134213 23134499 -259059165 + AluY SINE Alu 1 292 -19 281 360 59 20 chr1 23135492 23135645 -259058019 - L2 LINE L2 -683 2631 2473 2109 123 0 3 chr1 23135648 23135948 -259057716 + AluSg SINE Alu 1 299 -11 996 289 56 19 chr1 23135981 23136358 -259057306 - LTR16C LTR ERVL -100 391 1 1421 319 161 22 chr1 23136358 23137513 -259056151 - L2 LINE L2 -930 2384 1070 1287 306 43 20 chr1 23138048 23138277 -259055387 - L2 LINE L2 0 3313 3091 2251 95 3 0 chr1 23138277 23138582 -259055082 + AluSx SINE Alu 1 306 -6 1287 306 43 20 chr1 23138582 23139038 -259054626 - L2 LINE L2 -222 3091 2603 360 254 108 75 chr1 23141028 23141186 -259052478 + MIR SINE MIR 4 170 -92 2228 53 3 30 chr1 23141186 23141531 -259052133 - AluY SINE Alu 0 311 1 360 254 108 75 chr1 23141531 23141576 -259052088 + MIR SINE MIR 170 212 -50 795 236 95 21 chr1 23143566 23143718 -259049946 + MIR SINE MIR 4 182 -80 2388 77 0 0 chr1 23143718 23144016 -259049648 + AluSx SINE Alu 1 298 -14 795 236 95 21 chr1 23144016 23144104 -259049560 + MIR SINE MIR 182 262 0 476 258 161 0 chr1 23144134 23144289 -259049375 - MER104 DNA MER2_type 0 180 1 2226 82 3 3 chr1 23145013 23145305 -259048359 + AluSg SINE Alu 1 292 -18 282 286 9 67 chr1 23145306 23145411 -259048253 + MIR SINE MIR 25 123 -139 233 250 216 0 chr1 23145411 23145527 -259048137 - MER104 DNA Tc2 -39 141 1 234 269 194 0 chr1 23146438 23146531 -259047133 - L2 LINE L2 0 3272 3162 274 361 57 0 chr1 23146531 23146653 -259047011 - L2 LINE L2 0 3272 3144 415 204 11 0 chr1 23147790 23147878 -259045786 - MER3 DNA MER1_type -104 105 17 401 230 11 0 chr1 23147886 23147973 -259045691 + MIR SINE MIR 175 262 0 2309 98 0 0 chr1 23147977 23148272 -259045392 - AluSx SINE Alu -17 295 1 242 397 22 15 chr1 23149084 23149220 -259044444 + MIR SINE MIR 18 154 -108 1742 143 11 7 chr1 23149316 23149595 -259044069 + AluSx SINE Alu 6 308 0 208 0 0 0 chr1 23149595 23149618 -259044046 + (TAAA)n Simple_repeat Simple_repeat 2 176 0 2261 69 0 0 chr1 23149719 23150021 -259043643 - AluSg SINE Alu 0 304 3 237 309 21 0 chr1 23150041 23150135 -259043529 - MER113 DNA MER1_type? -409 112 17 1192 213 29 0 chr1 23150141 23150381 -259043283 - MIR SINE MIR -10 252 6 416 270 63 69 chr1 23150997 23151051 -259042613 - MER91B DNA MER1_type 0 190 137 1960 119 42 0 chr1 23151051 23151336 -259042328 + AluSx SINE Alu 1 297 -15 416 270 63 69 chr1 23151336 23151470 -259042194 - MER91B DNA MER1_type -53 137 3 341 192 283 0 chr1 23152353 23152452 -259041212 + MIR3 SINE MIR 29 155 -53 259 304 107 0 chr1 23153487 23153599 -259040065 + MIR SINE MIR 23 146 -116 285 296 23 29 chr1 23153964 23154136 -259039528 + (TGGA)n Simple_repeat Simple_repeat 1 171 0 624 144 0 0 chr1 23154194 23154284 -259039380 + AluJ/FLAM SINE Alu 1 90 -222 1672 133 4 12 chr1 23154284 23154380 -259039284 + AluSx SINE Alu 40 135 -183 2081 107 17 3 chr1 23154380 23154680 -259038984 + AluY SINE Alu 1 304 -7 1672 133 4 12 chr1 23154680 23154864 -259038800 + AluSx SINE Alu 135 318 0 723 245 64 60 chr1 23156698 23156821 -259036843 + MIR SINE MIR 1 122 -140 2260 109 0 0 chr1 23156821 23157133 -259036531 - AluSx SINE Alu 0 312 1 723 245 64 60 chr1 23157133 23157258 -259036406 + MIR SINE MIR 122 250 -12 2106 68 14 37 chr1 23157398 23157694 -259035970 + AluSx SINE Alu 1 289 -23 358 277 155 14 chr1 23158285 23158365 -259035299 + MIR SINE MIR 86 153 -109 2213 98 3 3 chr1 23158365 23158660 -259035004 + AluSq SINE Alu 3 297 -16 358 277 155 14 chr1 23158660 23158727 -259034937 + MIR SINE MIR 153 254 -8 264 294 1 60 chr1 23158745 23158837 -259034827 + MIR SINE MIR 10 97 -111 2341 95 0 0 chr1 23158978 23159283 -259034381 - AluSx SINE Alu -7 305 1 668 195 0 0 chr1 23159698 23159811 -259033853 + FAM SINE Alu 2 114 -71 270 226 24 36 chr1 23159853 23159937 -259033727 + (TGAG)n Simple_repeat Simple_repeat 4 86 0 414 280 113 36 chr1 23160822 23160990 -259032674 + MIR SINE MIR 15 195 -67 226 314 12 12 chr1 23161967 23162053 -259031611 + CT-rich Low_complexity Low_complexity 5 90 0 243 79 0 0 chr1 23162698 23162736 -259030928 + (TTCA)n Simple_repeat Simple_repeat 4 41 0 307 282 122 50 chr1 23162736 23162917 -259030747 - L2 LINE L2 -14 3299 3106 2297 90 0 10 chr1 23164261 23164571 -259029093 - AluSq SINE Alu -6 307 1 222 306 36 27 chr1 23165682 23165793 -259027871 + MIR SINE MIR 41 152 -56 410 283 110 6 chr1 23166210 23166389 -259027275 + MIR SINE MIR 47 244 -18 353 252 49 16 chr1 23167218 23167341 -259026323 + MIR3 SINE MIR 12 138 -70 723 208 73 62 chr1 23167563 23167755 -259025909 + MIR SINE MIR 7 200 -62 2018 110 4 0 chr1 23167755 23168036 -259025628 - AluSx SINE Alu -21 291 10 288 70 23 0 chr1 23168036 23168079 -259025585 - Alu SINE Alu -257 44 1 241 204 0 0 chr1 23168048 23168097 -259025567 - Alu SINE Alu -137 166 118 * 2203 88 3 14 chr1 23168163 23168458 -259025206 + AluSp SINE Alu 1 292 -21 909 127 0 8 chr1 23168468 23168602 -259025062 + AluJo/FLAM SINE Alu 1 133 -179 1607 186 49 0 chr1 23168604 23168889 -259024775 + AluJo SINE Alu 1 299 -13 2185 116 10 0 chr1 23168889 23169192 -259024472 + AluSx SINE Alu 1 306 -6 192 293 43 112 chr1 23169202 23169318 -259024346 + MIR SINE MIR 152 259 -3 444 224 47 9 chr1 23169546 23169653 -259024011 + MER81 DNA DNA 2 112 -2 189 0 0 0 chr1 23169676 23169697 -259023967 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 1219 214 79 6 chr1 23169706 23170047 -259023617 - Charlie4a DNA MER1_type -115 393 28 24 32 0 0 chr1 23171712 23171743 -259021921 + AT_rich Low_complexity Low_complexity 1 31 0 390 236 165 16 chr1 23172850 23172977 -259020687 - MIR SINE MIR -88 174 29 333 277 216 0 chr1 23173578 23173726 -259019938 - MIR SINE MIR -62 200 21 2003 120 3 0 chr1 23173773 23174056 -259019608 - AluJb SINE Alu -28 284 1 416 196 83 83 chr1 23174057 23174190 -259019474 - MIR SINE MIR -19 243 111 504 278 73 16 chr1 23174199 23174390 -259019274 - L2 LINE L2 -1 3312 3111 2397 44 40 0 chr1 23174420 23174717 -259018947 - AluYa5 SINE Alu -1 310 2 914 183 33 64 chr1 23174727 23174807 -259018857 - L1MB3 LINE L1 -1 6182 6101 3041 101 31 0 chr1 23174807 23175221 -259018443 + MSTA LTR MaLR 1 427 -1 914 183 33 64 chr1 23175221 23175412 -259018252 - L1MB3 LINE L1 -82 6101 5918 37 69 0 0 chr1 23175413 23175485 -259018179 + AT_rich Low_complexity Low_complexity 1 72 0 425 17 33 0 chr1 23175485 23175545 -259018119 - MSTA LTR MaLR -46 382 321 2220 83 10 0 chr1 23175591 23175880 -259017784 - AluSp SINE Alu -21 292 1 421 261 71 78 chr1 23175969 23176252 -259017412 - L2 LINE L2 -338 2976 2696 1555 132 75 233 chr1 23176259 23176660 -259017004 + L1MC3 LINE L1 7114 7577 -208 1112 67 0 0 chr1 23176660 23176795 -259016869 + AluSp SINE Alu 1 135 -178 2076 109 0 14 chr1 23176795 23177088 -259016576 + AluSx SINE Alu 1 289 -23 180 0 0 0 chr1 23177094 23177114 -259016550 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1555 132 75 233 chr1 23177114 23177356 -259016308 + L1MC3 LINE L1 7581 7775 -10 1606 156 13 53 chr1 23177356 23177657 -259016007 + AluJb SINE Alu 24 312 0 1011 273 174 9 chr1 23177694 23178244 -259015420 - L2 LINE L2 -655 2659 2019 476 200 26 43 chr1 23178425 23178540 -259015124 + MIR3 SINE MIR 60 172 -36 382 355 16 0 chr1 23179192 23179313 -259014351 - MIR SINE MIR -1 261 139 30 0 0 0 chr1 23179313 23179343 -259014321 + AT_rich Low_complexity Low_complexity 1 30 0 767 164 23 0 chr1 23179343 23179471 -259014193 - FLAM_C SINE Alu 0 133 3 295 264 24 8 chr1 23179751 23179876 -259013788 + (TG)n Simple_repeat Simple_repeat 1 127 0 26 0 0 0 chr1 23180280 23180306 -259013358 + GC_rich Low_complexity Low_complexity 1 26 0 674 273 42 2 chr1 23180563 23180750 -259012914 + MIR SINE MIR 5 197 -42 2133 82 10 3 chr1 23180799 23181092 -259012572 + AluSx SINE Alu 1 295 -17 451 207 57 33 chr1 23181121 23181370 -259012294 + MLT1L LTR MaLR 309 615 0 218 254 75 0 chr1 23181370 23181437 -259012227 + MIR SINE MIR 169 240 -22 2317 84 0 0 chr1 23181655 23181954 -259011710 - AluSc SINE Alu -10 299 1 361 315 56 39 chr1 23181958 23182136 -259011528 - MIR SINE MIR -17 245 65 792 311 100 26 chr1 23182990 23183379 -259010285 + L2 LINE L2 2893 3310 -3 208 329 27 0 chr1 23183377 23183450 -259010214 + MIR3 SINE MIR 83 157 -51 * 326 286 18 95 chr1 23183530 23183623 -259010041 + MIR SINE MIR 102 178 -84 2265 102 0 10 chr1 23183623 23183928 -259009736 + AluSg SINE Alu 1 302 -8 326 286 18 95 chr1 23183928 23184002 -259009662 + MIR SINE MIR 178 256 -6 1601 110 136 15 chr1 23184151 23184423 -259009241 + AluSx SINE Alu 1 305 -7 262 214 0 18 chr1 23184564 23184620 -259009044 + MER69 DNA AcHobo 8 62 -115 2350 93 0 0 chr1 23184637 23184948 -259008716 - AluY SINE Alu 0 311 1 624 103 0 10 chr1 23184948 23185038 -259008626 - AluSg/x SINE Alu -5 304 214 1965 85 4 4 chr1 23185038 23185298 -259008366 - AluSx SINE Alu -52 260 1 618 119 9 0 chr1 23185334 23185443 -259008221 + L1MB2 LINE L1 6019 6128 -43 572 174 11 0 chr1 23185445 23185537 -259008127 + AluJ/FLAM SINE Alu 1 93 -219 1486 116 91 8 chr1 23185537 23185778 -259007886 + AluSx SINE Alu 21 281 -31 2343 101 0 0 chr1 23185884 23186190 -259007474 + AluSx SINE Alu 1 306 -6 2770 159 31 49 chr1 23186319 23186392 -259007272 + MER41B LTR ERV1 1 74 -561 1964 94 0 4 chr1 23186392 23186648 -259007016 - AluY SINE Alu -56 255 1 2770 159 31 49 chr1 23186648 23187183 -259006481 + MER41B LTR ERV1 74 598 -37 2378 87 3 0 chr1 23187183 23187495 -259006169 - AluSq SINE Alu 0 313 1 2353 99 0 0 chr1 23187495 23187799 -259005865 - AluSq SINE Alu -9 304 1 953 172 5 61 chr1 23187860 23188058 -259005606 - AluJo SINE Alu -125 187 1 283 209 330 17 chr1 23188058 23188173 -259005491 - L2 LINE L2 -533 2781 2631 2914 132 7 64 chr1 23188205 23188782 -259004882 - MER4B LTR ERV1 -37 573 31 2254 87 0 10 chr1 23188782 23189082 -259004582 - AluSq SINE Alu -16 297 1 2914 132 7 64 chr1 23189082 23189112 -259004552 - MER4B LTR ERV1 -579 31 1 206 188 58 101 chr1 23189112 23189181 -259004483 - L2 LINE L2 -679 2635 2570 1647 117 0 43 chr1 23189192 23189449 -259004215 - AluSx SINE Alu -10 302 57 275 73 24 0 chr1 23189456 23189497 -259004167 + AluSg/x SINE Alu 112 153 -147 2478 262 71 22 chr1 23189541 23189881 -259003783 - L2 LINE L2 -767 2547 2225 4385 54 22 30 chr1 23189881 23189960 -259003704 + LTR10C LTR ERV1 1 79 -512 2026 93 25 4 chr1 23189960 23190239 -259003425 + AluSp SINE Alu 3 287 -26 4385 54 22 30 chr1 23190239 23190468 -259003196 + LTR10C LTR ERV1 79 308 -283 2306 79 7 13 chr1 23190468 23190773 -259002891 - AluSp SINE Alu -10 303 1 4385 54 22 30 chr1 23190773 23191012 -259002652 + LTR10C LTR ERV1 308 546 -45 2321 82 0 3 chr1 23191012 23191315 -259002349 - AluSc SINE Alu -7 302 1 4385 54 22 30 chr1 23191315 23191361 -259002303 + LTR10C LTR ERV1 546 591 0 2478 262 71 22 chr1 23191361 23191865 -259001799 - L2 LINE L2 -1089 2225 1658 2012 131 7 0 chr1 23191865 23192163 -259001501 - AluJb SINE Alu -12 300 1 2298 78 3 57 chr1 23192441 23192539 -259001125 + MER41B LTR ERV1 1 103 -532 1913 123 14 0 chr1 23192539 23192823 -259000841 - AluSg SINE Alu -22 288 1 2298 78 3 57 chr1 23192823 23193110 -259000554 + MER41B LTR ERV1 103 365 -270 2214 90 0 10 chr1 23193110 23193409 -259000255 + AluSq SINE Alu 1 296 -17 2275 61 7 7 chr1 23193506 23193863 -258999801 - AluY SINE Alu 0 358 2 219 355 72 14 chr1 23193926 23194064 -258999600 + L2 LINE L2 2906 3051 -221 2164 91 3 0 chr1 23194180 23194478 -258999186 - AluSp SINE Alu -14 299 1 23 0 0 0 chr1 23195440 23195463 -258998201 + GC_rich Low_complexity Low_complexity 1 23 0 1702 139 47 0 chr1 23196832 23197106 -258996558 - AluSx SINE Alu -25 287 1 260 160 0 147 chr1 23197072 23197117 -258996547 - AluSg/x SINE Alu -133 167 158 2156 88 0 69 chr1 23197117 23197436 -258996228 - AluSp SINE Alu -16 297 1 260 160 0 147 chr1 23197436 23197465 -258996199 - AluSg/x SINE Alu -142 158 126 753 136 104 0 chr1 23197933 23198058 -258995606 - AluSg/x SINE Alu -18 294 157 1599 166 11 19 chr1 23197947 23198218 -258995446 - AluSx SINE Alu -43 269 1 866 157 16 94 chr1 23198373 23198564 -258995100 - AluSg/x SINE Alu 0 312 137 2145 106 7 3 chr1 23198678 23198970 -258994694 - AluSx SINE Alu -19 293 1 1164 224 75 8 chr1 23199305 23199573 -258994091 + MER21B LTR ERV1 12 297 -566 1878 102 0 23 chr1 23199573 23199838 -258993826 - AluSg1 SINE Alu -11 298 40 1927 159 0 3 chr1 23199850 23200146 -258993518 - AluSx SINE Alu -15 297 3 243 88 0 0 chr1 23200447 23200481 -258993183 + (TCCC)n Simple_repeat Simple_repeat 1 34 0 2179 113 0 3 chr1 23200481 23200772 -258992892 - AluSp SINE Alu -23 290 1 2592 59 0 0 chr1 23201415 23201718 -258991946 - AluSg SINE Alu -7 303 1 2027 133 3 16 chr1 23202011 23202320 -258991344 - AluSx SINE Alu -7 305 1 950 185 5 54 chr1 23202511 23202695 -258990969 - FAM SINE Alu 0 175 1 864 163 137 26 chr1 23202819 23203009 -258990655 + AluJo SINE Alu 86 296 -16 2236 94 10 7 chr1 23203184 23203491 -258990173 - AluSp SINE Alu -5 308 1 2153 92 9 19 chr1 23203554 23203870 -258989794 - AluSq SINE Alu 0 313 1 3217 192 135 12 chr1 23204009 23204846 -258988818 - L1MC4 LINE L1 -329 7713 6774 1975 210 106 90 chr1 23204847 23205098 -258988566 - L1MC4a LINE L1 -1385 6423 6177 2194 108 0 32 chr1 23205098 23205414 -258988250 - AluSx SINE Alu -6 306 1 1975 210 106 90 chr1 23205414 23205510 -258988154 - L1MC4a LINE L1 -1631 6177 6084 342 0 0 0 chr1 23205510 23205548 -258988116 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 1943 117 44 0 chr1 23205548 23205822 -258987842 - AluSg SINE Alu -24 286 1 1975 210 106 90 chr1 23205822 23206079 -258987585 - L1MC4a LINE L1 -1724 6084 5798 351 0 0 0 chr1 23206079 23206118 -258987546 + (TG)n Simple_repeat Simple_repeat 2 40 0 1975 210 106 90 chr1 23206118 23206334 -258987330 - L1MC4a LINE L1 -2010 5798 5587 553 228 44 0 chr1 23206338 23206474 -258987190 - L1MC4a LINE L1 -2260 5548 5407 231 36 0 0 chr1 23206678 23206706 -258986958 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 24 67 0 0 chr1 23206998 23207043 -258986621 + AT_rich Low_complexity Low_complexity 1 45 0 25 31 0 0 chr1 23207083 23207115 -258986549 + AT_rich Low_complexity Low_complexity 1 32 0 2009 127 19 13 chr1 23207798 23208105 -258985559 - AluSx SINE Alu -3 309 1 2266 81 11 0 chr1 23208110 23208420 -258985244 - AluSp SINE Alu 0 313 1 805 180 8 0 chr1 23208425 23208553 -258985111 - FLAM_C SINE Alu -13 130 2 276 206 16 16 chr1 23208670 23208725 -258984939 - LTR41 LTR ERVL -2 771 714 1781 163 33 3 chr1 23208725 23209025 -258984639 - AluJb SINE Alu -3 309 1 1023 235 208 86 chr1 23209146 23209819 -258983845 - LTR41 LTR ERVL -12 761 7 2183 123 0 0 chr1 23210123 23210423 -258983241 - AluSg SINE Alu -10 300 1 2151 125 10 0 chr1 23210455 23210759 -258982905 - AluSx SINE Alu -5 307 1 1540 151 92 11 chr1 23210762 23211034 -258982630 - AluSx SINE Alu -18 294 1 24 0 0 0 chr1 23211322 23211346 -258982318 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr1 23211400 23211421 -258982243 + AT_rich Low_complexity Low_complexity 1 21 0 686 149 9 9 chr1 23212102 23212209 -258981455 + L1PB4 LINE L1 6037 6143 -13 2178 101 3 0 chr1 23212257 23212543 -258981121 - AluSg SINE Alu 0 310 24 2324 91 0 29 chr1 23213405 23213713 -258979951 - AluSp SINE Alu -14 299 1 1744 236 242 44 chr1 23213713 23214401 -258979263 - L2 LINE L2 -12 3301 2751 1693 205 0 0 chr1 23214401 23214708 -258978956 + AluJo SINE Alu 1 307 -5 1744 236 242 44 chr1 23214708 23215085 -258978579 - L2 LINE L2 -562 2751 2005 234 171 0 0 chr1 23215140 23215181 -258978483 + Alu SINE Alu 62 102 -64 2017 147 3 0 chr1 23215375 23215675 -258977989 - AluSx SINE Alu -11 301 1 2541 72 0 0 chr1 23216431 23216737 -258976927 + AluSq SINE Alu 1 306 -7 1286 143 219 8 chr1 23217849 23218086 -258975578 - AluSx SINE Alu -15 287 1 1145 142 205 35 chr1 23218717 23218971 -258974693 - AluJb SINE Alu -5 307 11 264 59 0 0 chr1 23218991 23219025 -258974639 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 2403 93 3 3 chr1 23219502 23219814 -258973850 - AluSq SINE Alu -1 312 1 2179 125 10 10 chr1 23219837 23220149 -258973515 - AluSx SINE Alu 0 312 1 361 248 113 7 chr1 23220169 23220310 -258973354 - Charlie4 DNA MER1_type -1701 260 105 216 250 144 0 chr1 23220324 23220428 -258973236 + L2 LINE L2 700 818 -2496 344 228 97 97 chr1 23220466 23220672 -258972992 - L1ME3A LINE L1 0 6170 5965 216 342 54 18 chr1 23220751 23220862 -258972802 + L2 LINE L2 1075 1189 -2125 23 0 0 0 chr1 23221280 23221303 -258972361 + AT_rich Low_complexity Low_complexity 1 23 0 260 53 26 0 chr1 23221694 23221732 -258971932 + (TTTTC)n Simple_repeat Simple_repeat 2 40 0 2336 108 0 13 chr1 23221736 23222052 -258971612 - AluSx SINE Alu 0 312 1 1565 184 18 7 chr1 23222332 23222615 -258971049 - AluJo SINE Alu -26 286 1 235 290 100 50 chr1 23222790 23223090 -258970574 - HAL1 LINE L1 -821 1686 1372 348 25 0 0 chr1 23223130 23223170 -258970494 - U7 snRNA snRNA -23 40 1 619 272 110 35 chr1 23223210 23223637 -258970027 - L1MEd LINE L1 -4919 1200 742 2403 144 60 70 chr1 23223958 23224098 -258969566 + L1MA7 LINE L1 5769 5909 -382 2161 98 7 3 chr1 23224098 23224394 -258969270 + AluSp SINE Alu 1 297 -16 2403 144 60 70 chr1 23224394 23224767 -258968897 + L1MA7 LINE L1 5909 6277 -14 453 124 57 48 chr1 23224767 23224872 -258968792 - AluSp/q SINE Alu -3 310 205 1428 137 92 92 chr1 23225043 23225378 -258968286 + L1MA7 LINE L1 5934 6271 -20 2267 114 7 0 chr1 23225378 23225684 -258967980 - AluSq SINE Alu -5 308 1 1428 137 92 92 chr1 23225684 23225705 -258967959 + L1MA7 LINE L1 6270 6290 -1 256 295 74 42 chr1 23226026 23226121 -258967543 + L2 LINE L2 3176 3273 -40 929 184 94 25 chr1 23226216 23226263 -258967401 + AluJo SINE Alu 85 127 -185 2171 117 0 7 chr1 23226263 23226563 -258967101 + AluSq SINE Alu 1 298 -15 2319 88 0 0 chr1 23226563 23226870 -258966794 + AluSq SINE Alu 1 307 0 929 184 94 25 chr1 23226870 23227021 -258966643 + AluJo SINE Alu 126 299 -13 343 198 125 0 chr1 23227623 23227719 -258965945 - L1MA9 LINE L1 0 6312 6205 23 0 0 0 chr1 23228501 23228524 -258965140 + AT_rich Low_complexity Low_complexity 1 23 0 874 207 29 29 chr1 23228640 23228814 -258964850 - AluJ SINE Alu -21 291 118 1808 153 0 55 chr1 23228835 23229003 -258964661 - AluSx SINE Alu -22 290 145 1957 135 32 26 chr1 23229003 23229314 -258964350 - AluSq SINE Alu 0 313 1 1808 153 0 55 chr1 23229314 23229452 -258964212 - AluSx SINE Alu -167 145 1 814 154 8 8 chr1 23229478 23229601 -258964063 - AluJ SINE Alu -187 125 3 24 53 0 0 chr1 23229615 23229653 -258964011 + AT_rich Low_complexity Low_complexity 1 38 0 1624 189 6 22 chr1 23230487 23230804 -258962860 - AluJo SINE Alu 0 312 1 979 182 6 0 chr1 23230969 23231134 -258962530 + AluJb SINE Alu 140 305 -7 2351 95 0 3 chr1 23231491 23231787 -258961877 - AluSx SINE Alu -17 295 1 870 224 53 33 chr1 23231947 23232461 -258961203 - Charlie2 DNA MER1_type -37 2825 2217 437 242 91 42 chr1 23232462 23232627 -258961037 - Charlie2 DNA MER1_type -2544 238 66 1718 128 0 4 chr1 23232629 23232871 -258960793 - AluSx SINE Alu -17 295 55 1965 115 49 0 chr1 23233036 23233322 -258960342 - AluSx SINE Alu -12 300 1 2018 134 3 3 chr1 23233457 23233756 -258959908 + AluSx SINE Alu 1 299 -13 2276 110 7 0 chr1 23233963 23234263 -258959401 + AluSc SINE Alu 1 302 -7 1320 128 59 0 chr1 23234318 23234521 -258959143 - AluSg/x SINE Alu -9 301 87 186 43 0 0 chr1 23234553 23234576 -258959088 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 1768 158 30 7 chr1 23234576 23234863 -258958801 - AluSx SINE Alu -15 297 1 2300 107 0 0 chr1 23235717 23236016 -258957648 - AluSg1 SINE Alu -7 302 4 2208 108 0 3 chr1 23239256 23239553 -258954111 - AluSp SINE Alu -17 296 1 516 249 61 56 chr1 23239627 23239824 -258953840 - MIR SINE MIR -45 217 20 2105 115 20 3 chr1 23241491 23241786 -258951878 - AluSx SINE Alu -12 300 1 1898 151 34 0 chr1 23242169 23242460 -258951204 - AluJb SINE Alu -11 301 1 1618 196 18 0 chr1 23242464 23242750 -258950914 - AluJo SINE Alu -10 302 12 693 170 121 21 chr1 23244046 23244187 -258949477 + FRAM SINE Alu 1 155 -11 2062 129 0 25 chr1 23244194 23244512 -258949152 + AluSx SINE Alu 3 312 0 1844 99 80 56 chr1 23245111 23245413 -258948251 - AluSq SINE Alu -4 309 1 860 146 0 29 chr1 23245417 23245554 -258948110 - FLAM_C SINE Alu 0 133 1 23 0 0 0 chr1 23245566 23245589 -258948075 + AT_rich Low_complexity Low_complexity 1 23 0 2039 96 12 78 chr1 23245703 23246037 -258947627 - AluSx SINE Alu 0 312 1 1976 104 4 0 chr1 23246203 23246463 -258947201 + AluSg SINE Alu 38 298 -12 247 256 48 56 chr1 23246866 23246991 -258946673 - L1ME LINE L1 -430 5691 5568 1648 135 81 0 chr1 23247060 23247344 -258946320 - AluSg SINE Alu 0 306 2 236 91 23 0 chr1 23247571 23247615 -258946049 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 1806 163 0 3 chr1 23247618 23247900 -258945764 - AluJb SINE Alu -31 281 1 2238 68 43 0 chr1 23247995 23248274 -258945390 - AluY SINE Alu -20 291 1 3642 166 63 19 chr1 23248431 23249131 -258944533 + MER44D DNA MER2_type 2 604 -1 669 205 100 3 chr1 23249937 23250158 -258943506 - AluJo SINE Alu -6 306 2 1378 197 47 11 chr1 23250460 23250739 -258942925 + AluJo SINE Alu 3 291 -21 1643 188 0 23 chr1 23251611 23251920 -258941744 + AluJb SINE Alu 1 302 -10 273 230 0 0 chr1 23251920 23251994 -258941670 + GA-rich Low_complexity Low_complexity 1 74 0 2240 114 3 0 chr1 23252093 23252392 -258941272 + AluSx SINE Alu 1 300 -12 405 215 34 96 chr1 23252576 23252634 -258941030 - MIR SINE MIR -12 250 190 1786 171 7 3 chr1 23252634 23252939 -258940725 - AluSx SINE Alu -2 310 5 405 215 34 96 chr1 23252939 23253057 -258940607 - MIR SINE MIR -72 190 85 759 304 129 41 chr1 23253276 23253940 -258939724 - HAL1 LINE L1 -1707 800 78 1406 173 102 19 chr1 23253940 23254206 -258939458 + AluJo SINE Alu 6 293 -19 25 75 0 0 chr1 23255014 23255067 -258938597 + AT_rich Low_complexity Low_complexity 1 53 0 268 279 23 0 chr1 23255475 23255561 -258938103 - L1MC/D LINE L1 -1949 5859 5772 1358 161 104 8 chr1 23255835 23256084 -258937580 + AluJo SINE Alu 1 273 -39 588 110 12 0 chr1 23256184 23256266 -258937398 + FRAM SINE Alu 63 145 -31 2327 105 0 10 chr1 23256280 23256593 -258937071 - AluSg SINE Alu 0 310 1 35 0 0 0 chr1 23256600 23256635 -258937029 + AT_rich Low_complexity Low_complexity 1 35 0 252 0 0 0 chr1 23256661 23256689 -258936975 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2027 130 7 0 chr1 23256692 23256976 -258936688 - AluSg SINE Alu -24 286 1 1631 180 11 7 chr1 23256985 23257313 -258936351 - AluSx SINE Alu 0 329 1 191 211 0 0 chr1 23257319 23257357 -258936307 + MIR SINE MIR 47 84 -178 336 272 10 19 chr1 23260146 23260249 -258933415 + CT-rich Low_complexity Low_complexity 4 105 0 483 252 57 46 chr1 23260485 23260666 -258932998 - L1ME3A LINE L1 -222 5948 5767 1409 208 49 14 chr1 23261173 23261457 -258932207 + AluJo SINE Alu 1 294 -18 370 321 111 55 chr1 23261875 23262255 -258931409 - L2 LINE L2 0 3272 2872 892 170 101 37 chr1 23262256 23262310 -258931354 + MER3 DNA MER1_type 1 66 -143 259 311 133 7 chr1 23262310 23262461 -258931203 - MER3 DNA MER1_type 0 209 40 540 310 43 17 chr1 23262475 23262775 -258930889 - L2 LINE L2 -470 2844 2537 2238 119 0 6 chr1 23263799 23264111 -258929553 - AluSg SINE Alu 0 310 1 2109 113 27 3 chr1 23264111 23264403 -258929261 - AluSg SINE Alu -11 299 1 1608 85 0 5 chr1 23265197 23265409 -258928255 - AluY SINE Alu -18 293 83 2609 74 0 0 chr1 23266412 23266722 -258926942 - AluY SINE Alu -1 310 1 2171 114 7 3 chr1 23267639 23267947 -258925717 - AluSp SINE Alu -4 309 1 318 264 33 66 chr1 23267985 23268197 -258925467 - L1MC5 LINE L1 -522 7439 7235 1304 129 55 0 chr1 23268396 23268598 -258925066 - AluJo SINE Alu -30 282 70 2484 77 0 6 chr1 23269502 23269813 -258923851 - AluSg1 SINE Alu 0 309 1 222 338 0 0 chr1 23271425 23271493 -258922171 + L2 LINE L2 3231 3298 -15 1984 149 0 3 chr1 23272460 23272748 -258920916 - AluSx SINE Alu -21 291 5 2245 114 3 3 chr1 23272765 23273071 -258920593 - AluSp SINE Alu -7 306 1 1938 164 3 19 chr1 23273275 23273592 -258920072 + AluJo SINE Alu 1 312 0 279 91 0 0 chr1 23275243 23275287 -258918377 - FLAM_A SINE Alu 0 133 90 2347 69 0 0 chr1 23275478 23275780 -258917884 - AluSg SINE Alu 0 304 3 261 192 55 27 chr1 23275800 23275873 -258917791 - MER113 DNA MER1_type? -409 112 38 1131 209 26 0 chr1 23275910 23276140 -258917524 - MIR SINE MIR -21 241 6 235 236 18 0 chr1 23276757 23276812 -258916852 - MER91 DNA MER1_type 0 196 141 1928 141 39 0 chr1 23276812 23277096 -258916568 + AluSx SINE Alu 1 295 -17 2471 169 121 28 chr1 23277209 23277461 -258916203 + LTR28 LTR ERV1 1 228 -792 2314 110 0 0 chr1 23277461 23277762 -258915902 - AluSg SINE Alu -9 301 1 2471 169 121 28 chr1 23277762 23278037 -258915627 + LTR28 LTR ERV1 228 577 -443 383 206 59 81 chr1 23278084 23278220 -258915444 + LTR27 LTR ERV1 502 634 -2 354 281 186 0 chr1 23278224 23278445 -258915219 - L2 LINE L2 -1241 2073 1812 1013 170 0 55 chr1 23278449 23278674 -258914990 + MER33 DNA MER1_type 1 200 -82 1859 145 3 48 chr1 23278679 23278990 -258914674 - AluJb SINE Alu -15 297 1 1239 134 0 0 chr1 23279005 23279177 -258914487 - AluSg/x SINE Alu -8 304 133 241 162 14 14 chr1 23279179 23279253 -258914411 + MER33 DNA MER1_type 211 284 -40 777 157 7 189 chr1 23279263 23279325 -258914339 + AluJb SINE Alu 64 136 -176 2482 73 0 0 chr1 23279325 23279626 -258914038 + AluY SINE Alu 11 311 0 777 157 7 189 chr1 23279626 23279843 -258913821 + AluJb SINE Alu 136 292 -20 1668 193 24 3 chr1 23279845 23280141 -258913523 + AluJb SINE Alu 1 302 -10 2179 112 0 0 chr1 23280141 23280427 -258913237 + AluSg SINE Alu 1 286 -24 198 0 0 0 chr1 23280441 23280463 -258913201 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 2423 101 0 0 chr1 23280523 23280829 -258912835 + AluSx SINE Alu 1 306 -6 381 178 0 27 chr1 23280958 23281031 -258912633 + MER41C LTR ERV1 1 71 -483 2001 86 4 0 chr1 23281031 23281286 -258912378 - AluSx SINE Alu -56 256 1 767 172 16 0 chr1 23281286 23281408 -258912256 - AluJb SINE Alu -187 125 2 2035 115 3 14 chr1 23281679 23281974 -258911690 + AluSx SINE Alu 12 303 -9 181 279 33 33 chr1 23282047 23282108 -258911556 + MIR SINE MIR 25 85 -177 435 229 0 10 chr1 23282299 23282395 -258911269 + MIR SINE MIR 102 196 -66 1908 150 0 7 chr1 23282404 23282691 -258910973 + AluJb SINE Alu 3 287 -25 597 113 0 62 chr1 23282703 23282800 -258910864 + AluSg/x SINE Alu 88 178 -132 744 115 0 64 chr1 23282902 23283058 -258910606 + AluSg/x SINE Alu 167 312 0 755 212 20 0 chr1 23283102 23283248 -258910416 - AluJb SINE Alu -100 212 64 2272 88 0 29 chr1 23283279 23283587 -258910077 - AluSg SINE Alu -11 299 1 282 100 0 0 chr1 23283604 23283644 -258910020 - FLAM SINE Alu -1 132 93 2356 92 0 0 chr1 23283889 23284183 -258909481 + AluY SINE Alu 1 294 -17 702 273 14 19 chr1 23284759 23284968 -258908696 - AluJo SINE Alu -8 304 97 238 266 32 0 chr1 23285152 23285246 -258908418 + L1ME3 LINE L1 4980 5076 -1070 509 96 0 130 chr1 23285266 23285381 -258908283 + L1PA14 LINE L1 5928 6027 -134 1980 134 14 0 chr1 23285384 23285674 -258907990 - AluSx SINE Alu -18 294 1 825 231 6 23 chr1 23285689 23285862 -258907802 + AluJb SINE Alu 132 301 -11 464 210 22 22 chr1 23285865 23286003 -258907661 + L1ME3 LINE L1 5674 5811 -351 832 137 0 8 chr1 23286016 23286140 -258907524 + FLAM_C SINE Alu 13 135 -8 322 235 127 77 chr1 23286144 23286404 -258907260 + L1ME3 LINE L1 5806 6078 -84 2385 83 7 3 chr1 23286445 23286745 -258906919 - AluSx SINE Alu -11 301 1 1457 111 14 24 chr1 23286870 23287077 -258906587 - AluSg/x SINE Alu -18 292 88 1908 150 0 7 chr1 23287089 23287376 -258906288 - AluJb SINE Alu -25 287 3 435 229 0 10 chr1 23287385 23287481 -258906183 - MIR SINE MIR -66 196 102 181 279 33 33 chr1 23287672 23287733 -258905931 - MIR SINE MIR -177 85 25 2035 115 3 14 chr1 23287806 23288101 -258905563 - AluSx SINE Alu -9 303 12 767 172 16 0 chr1 23288372 23288494 -258905170 + AluJb SINE Alu 2 125 -187 2388 96 0 0 chr1 23288494 23288795 -258904869 + AluSx SINE Alu 1 301 -11 2005 122 0 0 chr1 23289108 23289378 -258904286 + AluSq SINE Alu 1 270 -43 243 0 0 0 chr1 23289380 23289407 -258904257 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1873 150 3 35 chr1 23289634 23289773 -258903891 + AluJb SINE Alu 1 143 -169 2457 83 0 0 chr1 23289773 23290073 -258903591 + AluY SINE Alu 3 302 -9 1873 150 3 35 chr1 23290073 23290246 -258903418 + AluJb SINE Alu 143 303 -9 2182 108 0 20 chr1 23290523 23290829 -258902835 + AluSx SINE Alu 1 300 -12 2353 113 0 0 chr1 23291077 23291388 -258902276 + AluSq SINE Alu 1 311 -2 2278 112 0 0 chr1 23291446 23291742 -258901922 + AluSx SINE Alu 1 296 -16 1839 146 0 71 chr1 23291782 23291918 -258901746 + AluJb SINE Alu 1 145 -167 2209 98 3 7 chr1 23291918 23292214 -258901450 + AluY SINE Alu 1 295 -16 1839 146 0 71 chr1 23292214 23292400 -258901264 + AluJb SINE Alu 145 300 -12 2327 117 0 0 chr1 23292692 23293000 -258900664 + AluSx SINE Alu 1 308 -4 1490 149 0 105 chr1 23293171 23293494 -258900170 - AluJb SINE Alu -23 289 1 1662 139 47 0 chr1 23294907 23295181 -258898483 - AluSx SINE Alu -25 287 1 2038 89 3 64 chr1 23295192 23295505 -258898159 - AluSp SINE Alu -16 297 4 32 0 0 0 chr1 23295552 23295584 -258898080 + AT_rich Low_complexity Low_complexity 1 32 0 347 265 5 98 chr1 23296811 23297015 -258896649 + HAL1 LINE L1 192 376 -2131 4879 167 44 24 chr1 23297259 23297696 -258895968 + L1MA4 LINE L1 3775 4202 -2098 1608 167 36 0 chr1 23297696 23297977 -258895687 - AluSx SINE Alu -21 291 1 4879 167 44 24 chr1 23297977 23298087 -258895577 + L1MA4 LINE L1 4202 4308 -1992 231 162 0 0 chr1 23298087 23298124 -258895540 + tRNA-Val-GTT tRNA tRNA 1 37 -39 4879 167 44 24 chr1 23298124 23298197 -258895467 + L1MA4 LINE L1 4308 4378 -1922 1866 126 44 7 chr1 23298197 23298491 -258895173 + AluSx SINE Alu 1 305 -7 4879 167 44 24 chr1 23298491 23300168 -258893496 + L1MA4 LINE L1 4378 6175 -125 1262 170 4 13 chr1 23300168 23300403 -258893261 + AluJo SINE Alu 44 276 -36 675 167 8 8 chr1 23300403 23300535 -258893129 + L1MA5 LINE L1 6152 6283 -17 1633 150 61 10 chr1 23300540 23300833 -258892831 - AluSx SINE Alu -4 308 1 1989 131 7 0 chr1 23300920 23301217 -258892447 - AluSg SINE Alu -11 299 1 321 250 13 13 chr1 23301373 23301449 -258892215 + HAL1 LINE L1 1013 1088 -1419 724 321 128 14 chr1 23301542 23302028 -258891636 + HAL1 LINE L1 1523 2063 -444 316 267 61 23 chr1 23302236 23302250 -258891414 + HAL1 LINE L1 2300 2312 -195 2104 125 0 0 chr1 23302250 23302553 -258891111 + AluSx SINE Alu 1 303 -9 316 267 61 23 chr1 23302553 23302669 -258890995 + HAL1 LINE L1 2312 2435 -72 266 239 0 42 chr1 23302735 23302806 -258890858 + HAL1 LINE L1 2440 2507 0 2105 97 21 0 chr1 23303818 23304107 -258889557 + AluSq SINE Alu 1 295 -18 181 296 74 25 chr1 23306471 23306552 -258887112 + MER5A DNA MER1_type 25 109 -80 1180 138 61 0 chr1 23307438 23307634 -258886030 + AluJo SINE Alu 85 292 -20 249 159 0 0 chr1 23307742 23307786 -258885878 + (CA)n Simple_repeat Simple_repeat 2 45 0 182 339 102 45 chr1 23308101 23308278 -258885386 + MIR SINE MIR 17 203 -59 2086 106 0 47 chr1 23309086 23309273 -258884391 - AluSx SINE Alu -5 307 140 2120 89 55 0 chr1 23309273 23309564 -258884100 - AluSc SINE Alu -1 308 2 2086 106 0 47 chr1 23309564 23309698 -258883966 - AluSx SINE Alu -172 140 1 210 321 49 0 chr1 23310311 23310392 -258883272 + MIR SINE MIR 68 152 -56 216 224 66 53 chr1 23310778 23310854 -258882810 + L2 LINE L2 3150 3226 -46 188 224 121 17 chr1 23312768 23312826 -258880838 + MER5A DNA MER1_type 51 114 -75 222 204 19 0 chr1 23313712 23313766 -258879898 + MIR SINE MIR 70 124 -84 513 236 8 0 chr1 23314175 23314298 -258879366 + MIR SINE MIR 24 147 -61 34 55 0 0 chr1 23314323 23314378 -258879286 + GC_rich Low_complexity Low_complexity 1 55 0 371 292 59 0 chr1 23315976 23316118 -258877546 - MIR SINE MIR -61 147 32 245 235 62 0 chr1 23317738 23317819 -258875845 + MIR SINE MIR 42 127 -135 237 306 14 0 chr1 23318328 23318400 -258875264 - L2 LINE L2 -8 3264 3192 222 163 23 0 chr1 23318439 23318482 -258875182 - MIR SINE MIR -72 136 93 526 352 45 0 chr1 23318540 23318739 -258874925 + MIR SINE MIR 35 242 -20 315 257 55 50 chr1 23318740 23318900 -258874764 + MIR SINE MIR 12 178 -62 190 161 0 0 chr1 23319181 23319212 -258874452 + L2 LINE L2 3224 3254 -18 203 286 71 36 chr1 23319464 23319576 -258874088 + MIR SINE MIR 36 151 -57 363 313 36 0 chr1 23319680 23319792 -258873872 + MIR SINE MIR 35 150 -58 500 232 273 15 chr1 23320876 23321074 -258872590 - MIR SINE MIR -12 250 2 335 121 0 35 chr1 23321415 23321473 -258872191 - MIR3 SINE MIR -21 187 132 256 310 0 0 chr1 23321571 23321642 -258872022 - MIR SINE MIR -113 149 79 285 310 228 7 chr1 23321919 23322064 -258871600 - MIR3 SINE MIR -15 193 17 756 212 92 42 chr1 23322096 23322313 -258871351 - MIR SINE MIR -12 250 23 2044 125 0 10 chr1 23322544 23322841 -258870823 - AluSx SINE Alu -14 298 5 350 299 106 29 chr1 23323045 23323178 -258870486 - MIR SINE MIR -38 224 68 1992 119 7 0 chr1 23323178 23323464 -258870200 + AluSx SINE Alu 1 288 -24 350 299 106 29 chr1 23323464 23323537 -258870127 - MIR SINE MIR -194 68 2 433 271 100 7 chr1 23323895 23324035 -258869629 + MIR SINE MIR 89 241 -21 1934 72 133 0 chr1 23324607 23324870 -258868794 + AluSp SINE Alu 1 298 -5 21 0 0 0 chr1 23325069 23325090 -258868574 + AT_rich Low_complexity Low_complexity 1 21 0 750 172 9 0 chr1 23325095 23325211 -258868453 - FLAM_C SINE Alu -25 118 2 2070 115 23 13 chr1 23325222 23325526 -258868138 - AluSx SINE Alu -5 307 1 374 299 97 8 chr1 23325589 23325723 -258867941 - MER20B DNA MER1_type -444 339 194 339 274 142 0 chr1 23325761 23325874 -258867790 - MER20B DNA MER1_type -654 129 1 180 341 87 0 chr1 23325976 23326102 -258867562 - MIR3 SINE MIR -60 148 12 335 208 26 13 chr1 23326764 23326841 -258866823 + L2 LINE L2 3214 3291 -22 192 280 20 0 chr1 23326821 23326871 -258866793 + MIR SINE MIR 196 246 -16 * 183 171 195 0 chr1 23326841 23326882 -258866782 + L2 LINE L2 3262 3310 -3 * 2150 97 40 0 chr1 23327364 23327662 -258866002 - AluSg SINE Alu 0 310 1 258 260 48 29 chr1 23327701 23327805 -258865859 - MIR SINE MIR -67 141 36 184 297 47 0 chr1 23328332 23328396 -258865268 - MIR SINE MIR -149 113 47 373 317 32 0 chr1 23328430 23328553 -258865111 - L1MC4a LINE L1 -1946 5862 5736 228 190 52 17 chr1 23328561 23328619 -258865045 + MER116 DNA Mariner 21 80 0 2114 132 3 0 chr1 23328643 23328954 -258864710 - AluSx SINE Alu 0 312 1 1865 172 3 0 chr1 23328954 23329262 -258864402 - AluJb SINE Alu -3 309 1 710 239 5 70 chr1 23329274 23329487 -258864177 - MIR SINE MIR -13 249 51 237 65 0 0 chr1 23329699 23329730 -258863934 + (CCCCCA)n Simple_repeat Simple_repeat 3 33 0 234 91 0 0 chr1 23330145 23330178 -258863486 + (GGGA)n Simple_repeat Simple_repeat 2 34 0 338 61 20 0 chr1 23330196 23330245 -258863419 + (GGAA)n Simple_repeat Simple_repeat 4 53 0 454 315 27 0 chr1 23331368 23331514 -258862150 - MIR SINE MIR -5 257 108 24 85 0 0 chr1 23331657 23331716 -258861948 + GC_rich Low_complexity Low_complexity 1 59 0 22 35 0 0 chr1 23331757 23331786 -258861878 + GC_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr1 23331862 23331883 -258861781 + (CGGGGG)n Simple_repeat Simple_repeat 3 23 0 31 0 0 0 chr1 23331930 23331961 -258861703 + GC_rich Low_complexity Low_complexity 1 31 0 24 32 0 0 chr1 23332017 23332048 -258861616 + GC_rich Low_complexity Low_complexity 1 31 0 228 246 15 0 chr1 23332180 23332245 -258861419 + (TG)n Simple_repeat Simple_repeat 1 66 0 180 176 0 0 chr1 23332340 23332374 -258861290 + (TG)n Simple_repeat Simple_repeat 1 34 0 492 261 138 0 chr1 23334200 23334388 -258859276 + MIR SINE MIR 28 241 -21 620 275 123 0 chr1 23335165 23335376 -258858288 - MIR SINE MIR -2 260 24 357 317 32 8 chr1 23335492 23335615 -258858049 + MIR SINE MIR 21 146 -62 298 251 40 10 chr1 23336071 23336181 -258857483 + MIR SINE MIR 15 126 -82 1618 146 0 11 chr1 23336309 23336569 -258857095 - AluSx SINE Alu -16 296 40 251 324 165 0 chr1 23337219 23337389 -258856275 - MIR SINE MIR -17 245 48 606 273 34 46 chr1 23337598 23337836 -258855828 - MIR SINE MIR -12 250 16 1113 143 0 0 chr1 23338278 23338453 -258855211 - AluJb SINE Alu -1 311 137 346 345 0 17 chr1 23338610 23338726 -258854938 - L2 LINE L2 0 3313 3200 266 167 37 0 chr1 23338729 23338783 -258854881 + MIR SINE MIR 91 146 -116 2282 89 0 13 chr1 23338856 23339169 -258854495 - AluSg1 SINE Alu 0 309 1 693 322 70 4 chr1 23339203 23339445 -258854219 - MIR SINE MIR 0 262 5 505 271 40 0 chr1 23339453 23339604 -258854060 - L2 LINE L2 -248 3065 2909 309 255 34 47 chr1 23339903 23340019 -258853645 + MIR SINE MIR 39 151 -75 2412 78 3 0 chr1 23340200 23340509 -258853155 - AluSg SINE Alu 0 310 1 311 332 46 63 chr1 23340591 23340871 -258852793 - L2 LINE L2 -4 3268 2994 360 0 0 0 chr1 23340871 23340911 -258852753 + (TG)n Simple_repeat Simple_repeat 2 41 0 311 332 46 63 chr1 23340911 23340997 -258852667 - L2 LINE L2 -278 2994 2908 617 263 108 33 chr1 23341258 23341471 -258852193 + MIR SINE MIR 31 259 -3 209 331 136 0 chr1 23341646 23341815 -258851849 + MIR SINE MIR 19 210 -52 236 322 11 11 chr1 23341887 23341974 -258851690 + MIR3 SINE MIR 86 172 -36 372 245 59 20 chr1 23341987 23342089 -258851575 + MIR SINE MIR 34 139 -123 637 303 152 10 chr1 23342134 23342444 -258851220 - L2 LINE L2 0 3272 2919 1935 137 0 41 chr1 23342566 23342880 -258850784 + AluSx SINE Alu 1 301 -11 333 302 45 49 chr1 23343583 23343848 -258849816 - L2 LINE L2 -339 2975 2712 632 280 28 6 chr1 23344181 23344363 -258849301 - MIR SINE MIR -56 206 21 364 356 87 5 chr1 23344813 23345032 -258848632 + MIR SINE MIR 7 243 -19 368 367 54 0 chr1 23345050 23345197 -258848467 - L1ME4a LINE L1 -1 6120 5966 2226 123 3 0 chr1 23345301 23345611 -258848053 - AluSx SINE Alu -1 311 1 1792 161 6 50 chr1 23345611 23345934 -258847730 - AluJb SINE Alu -3 309 1 636 283 105 19 chr1 23345937 23346262 -258847402 - L1MC4a LINE L1 -167 5954 5600 1933 139 9 25 chr1 23346333 23346650 -258847014 + AluJb SINE Alu 1 312 0 204 240 40 0 chr1 23346650 23346700 -258846964 - L3 LINE CR1 -12 1565 1514 336 48 0 0 chr1 23346821 23346863 -258846801 + (TTCC)n Simple_repeat Simple_repeat 3 44 0 213 121 0 0 chr1 23346866 23346899 -258846765 + (TCC)n Simple_repeat Simple_repeat 3 35 0 2353 103 0 0 chr1 23346902 23347212 -258846452 - AluSp SINE Alu -3 310 1 182 36 0 36 chr1 23347311 23347339 -258846325 + (GGAA)n Simple_repeat Simple_repeat 4 30 0 877 188 85 1 chr1 23347368 23347562 -258846102 - MIR SINE MIR -37 171 6 577 251 24 48 chr1 23347577 23347744 -258845920 - MIR SINE MIR -13 249 87 279 314 29 10 chr1 23347862 23347964 -258845700 - MIR SINE MIR -63 145 42 301 265 10 31 chr1 23348237 23348335 -258845329 + L2 LINE L2 3175 3270 -2 208 283 76 76 chr1 23348629 23348774 -258844890 + MIR SINE MIR 83 227 -35 401 227 38 45 chr1 23349220 23349352 -258844312 + MIR SINE MIR 61 191 -71 269 179 71 18 chr1 23350633 23350689 -258842975 - MIR SINE MIR -80 182 124 1517 201 4 4 chr1 23350838 23351117 -258842547 - AluJo SINE Alu -31 281 3 319 319 38 59 chr1 23351165 23351403 -258842261 + MIR SINE MIR 30 262 0 211 273 93 27 chr1 23351599 23351723 -258841941 + MIR SINE MIR 10 146 -62 440 216 30 52 chr1 23351859 23351993 -258841671 + MIR3 SINE MIR 11 141 -67 2349 99 0 0 chr1 23352020 23352333 -258841331 - AluSq SINE Alu 0 313 1 1468 176 30 43 chr1 23352878 23353179 -258840485 + AluJo SINE Alu 1 297 -15 1830 132 43 13 chr1 23353179 23353482 -258840182 + AluJo SINE Alu 1 312 0 560 184 281 11 chr1 23353519 23353704 -258839960 + MIR SINE MIR 7 241 -21 428 324 69 6 chr1 23353839 23354012 -258839652 + MIR SINE MIR 17 200 -62 403 265 176 24 chr1 23354594 23354764 -258838900 + MIR SINE MIR 53 248 -14 207 100 0 0 chr1 23354804 23354834 -258838830 + (TCCC)n Simple_repeat Simple_repeat 2 31 0 1815 112 0 103 chr1 23354834 23354997 -258838667 - AluSx SINE Alu -16 296 182 2318 80 0 10 chr1 23354997 23355299 -258838365 - AluSc SINE Alu -10 299 1 1815 112 0 103 chr1 23355299 23355465 -258838199 - AluSx SINE Alu -130 182 1 183 42 0 0 chr1 23355607 23355631 -258838033 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 284 234 0 0 chr1 23355738 23355802 -258837862 - MIR SINE MIR -134 128 65 2265 103 3 3 chr1 23356021 23356333 -258837331 + AluSp SINE Alu 1 312 -1 222 326 107 21 chr1 23356688 23356898 -258836766 + MIR SINE MIR 9 258 -4 388 329 14 41 chr1 23357736 23357882 -258835782 + MIR SINE MIR 120 261 -1 361 296 45 30 chr1 23357875 23358007 -258835657 - L2 LINE L2 -2 3270 3137 * 808 275 47 0 chr1 23358043 23358276 -258835388 - MIR SINE MIR 0 262 19 317 298 32 0 chr1 23358393 23358487 -258835177 - MIR SINE MIR -120 142 46 254 220 198 11 chr1 23358794 23358885 -258834779 + MIR SINE MIR 42 149 -59 294 296 56 32 chr1 23359070 23359195 -258834469 - MIR3 SINE MIR -36 172 45 299 241 46 0 chr1 23359296 23359383 -258834281 + MIR3 SINE MIR 93 183 -25 363 235 219 8 chr1 23360390 23360509 -258833155 - MIR3 SINE MIR -25 183 40 419 316 167 0 chr1 23360706 23360874 -258832790 + MIR SINE MIR 53 248 -14 33 0 0 0 chr1 23361056 23361089 -258832575 + GC_rich Low_complexity Low_complexity 1 33 0 210 91 0 0 chr1 23361101 23361134 -258832530 + (CCCCG)n Simple_repeat Simple_repeat 1 33 0 21 36 0 0 chr1 23361140 23361168 -258832496 + GC_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr1 23361229 23361259 -258832405 + GC_rich Low_complexity Low_complexity 1 30 0 32 0 0 0 chr1 23361284 23361316 -258832348 + GC_rich Low_complexity Low_complexity 1 32 0 311 261 0 11 chr1 23364243 23364331 -258829333 + CT-rich Low_complexity Low_complexity 1 87 0 210 341 12 0 chr1 23364816 23364898 -258828766 - L2 LINE L2 -31 3241 3159 456 241 28 0 chr1 23365401 23365509 -258828155 + MER5A DNA MER1_type 19 129 -60 919 264 56 20 chr1 23366639 23366889 -258826775 + MIR SINE MIR 2 260 -2 382 288 45 0 chr1 23366887 23366998 -258826666 - L2 LINE L2 -22 3291 3176 * 542 239 268 34 chr1 23367148 23367357 -258826307 + MIR SINE MIR 2 259 -3 333 253 94 18 chr1 23367346 23367501 -258826163 - MIR SINE MIR -64 198 34 * 510 17 0 0 chr1 23367536 23367595 -258826069 + (TG)n Simple_repeat Simple_repeat 2 60 0 185 239 22 0 chr1 23367902 23367948 -258825716 + L2 LINE L2 3224 3270 -2 2143 121 0 0 chr1 23368040 23368337 -258825327 + AluSx SINE Alu 1 297 -15 413 278 32 8 chr1 23369398 23369524 -258824140 - MIR SINE MIR -118 144 16 313 336 130 0 chr1 23369797 23369928 -258823736 - MIR3 SINE MIR -36 172 25 472 284 196 5 chr1 23370611 23370805 -258822859 - MIR SINE MIR -10 252 22 325 223 78 29 chr1 23371125 23371228 -258822436 - MIR3 SINE MIR -30 178 71 590 355 50 16 chr1 23371335 23371577 -258822087 + MIR SINE MIR 1 250 -12 293 304 98 0 chr1 23372464 23372566 -258821098 + MIR SINE MIR 151 262 0 326 264 171 7 chr1 23372624 23372764 -258820900 - L2 LINE L2 -214 3058 2896 344 254 88 18 chr1 23373008 23373122 -258820542 + MIR3 SINE MIR 15 136 -72 727 158 0 36 chr1 23373151 23373290 -258820374 - L1PB3 LINE L1 0 6154 6021 345 242 289 0 chr1 23376254 23376403 -258817261 + MIR SINE MIR 4 195 -67 229 260 0 0 chr1 23377043 23377093 -258816571 + GA-rich Low_complexity Low_complexity 2 51 0 255 286 0 0 chr1 23377242 23377305 -258816359 - MIR SINE MIR -93 115 53 945 180 0 0 chr1 23378642 23378887 -258814777 + (CCCA)n Simple_repeat Simple_repeat 1 245 0 312 102 0 0 chr1 23378909 23378958 -258814706 + (TCCA)n Simple_repeat Simple_repeat 2 50 0 195 296 0 0 chr1 23378958 23379002 -258814662 - L2 LINE L2 -20 3293 3250 313 341 6 39 chr1 23379247 23379482 -258814182 + CT-rich Low_complexity Low_complexity 1 227 0 213 270 14 14 chr1 23379594 23379668 -258813996 + CT-rich Low_complexity Low_complexity 3 76 0 251 246 9 0 chr1 23379685 23379795 -258813869 + CT-rich Low_complexity Low_complexity 2 112 0 440 280 8 8 chr1 23381119 23381237 -258812427 - MIR SINE MIR -125 137 20 434 289 34 27 chr1 23381382 23381531 -258812133 + MIR SINE MIR 59 208 -54 286 222 0 0 chr1 23381612 23381675 -258811989 + MIR SINE MIR 47 109 -153 202 289 132 16 chr1 23382335 23382456 -258811208 - L2 LINE L2 -171 3142 3008 1060 184 6 0 chr1 23382539 23382713 -258810951 + FAM SINE Alu 1 175 0 425 323 85 40 chr1 23382762 23382834 -258810830 - L2 LINE L2 -462 2852 2785 2379 64 3 0 chr1 23382834 23383129 -258810535 - AluY SINE Alu -15 296 1 425 323 85 40 chr1 23383129 23383279 -258810385 - L2 LINE L2 -529 2785 2620 543 272 169 14 chr1 23383591 23383804 -258809860 + MIR SINE MIR 16 261 -1 332 276 82 8 chr1 23383822 23383956 -258809708 - L2 LINE L2 -514 2800 2657 517 260 107 60 chr1 23384387 23384743 -258808921 + L2 LINE L2 2725 3099 -173 351 331 16 0 chr1 23384770 23384891 -258808773 - L2 LINE L2 0 3272 3150 255 313 221 0 chr1 23384890 23385021 -258808643 + L2 LINE L2 3113 3272 0 * 180 0 0 0 chr1 23385602 23385622 -258808042 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 2213 86 4 0 chr1 23385630 23385909 -258807755 - AluY SINE Alu -30 281 2 4229 214 21 18 chr1 23385909 23386227 -258807437 - L1M4 LINE L1 -1815 4331 4015 1986 122 104 27 chr1 23386227 23386563 -258807101 + THE1B LTR MaLR 1 362 -2 4229 214 21 18 chr1 23386563 23387402 -258806262 - L1M4 LINE L1 -2131 4015 3171 184 262 301 0 chr1 23387403 23387506 -258806158 - MIR SINE MIR -128 134 1 369 318 45 40 chr1 23388423 23388599 -258805065 - MIR SINE MIR -36 226 50 486 290 180 10 chr1 23388873 23389073 -258804591 - MIR SINE MIR -26 236 3 377 222 0 0 chr1 23390519 23390591 -258803073 + tRNA-Gln-CAG tRNA tRNA 1 72 -3 220 286 43 0 chr1 23391497 23391567 -258802097 + GA-rich Low_complexity Low_complexity 3 75 0 231 188 125 0 chr1 23392975 23393039 -258800625 + HAL1 LINE L1 2281 2352 -155 195 204 0 0 chr1 23393162 23393206 -258800458 + (TA)n Simple_repeat Simple_repeat 2 45 0 291 360 47 14 chr1 23393368 23393643 -258800021 + L1MC/D LINE L1 5490 5772 -387 183 295 116 8 chr1 23393729 23393858 -258799806 - MIR SINE MIR -16 246 104 180 0 0 0 chr1 23393988 23394008 -258799656 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 526 50 50 0 chr1 23394790 23394870 -258798794 + (TATATG)n Simple_repeat Simple_repeat 5 88 0 33 66 0 0 chr1 23394888 23394949 -258798715 + AT_rich Low_complexity Low_complexity 1 61 0 1351 196 24 21 chr1 23395021 23395312 -258798352 + AluJo SINE Alu 14 305 -7 1196 273 81 29 chr1 23395387 23395801 -258797863 - L1 LINE L1 -1443 4703 4259 290 98 20 0 chr1 23395801 23395852 -258797812 + (TG)n Simple_repeat Simple_repeat 2 53 0 1196 273 81 29 chr1 23395852 23395921 -258797743 - L1 LINE L1 -1887 4259 4195 440 298 71 47 chr1 23395918 23396327 -258797337 - L1MCa LINE L1 -4701 1516 1098 * 269 244 101 8 chr1 23396569 23396688 -258796976 - L1MCa LINE L1 -5451 945 816 1600 154 0 19 chr1 23396688 23396954 -258796710 - AluSq SINE Alu -3 310 50 1090 266 28 8 chr1 23397257 23397645 -258796019 + L1M4 LINE L1 4859 5254 -892 365 344 21 10 chr1 23397648 23397840 -258795824 + MLT2D LTR ERVL 1 194 -220 270 189 68 0 chr1 23397865 23397939 -258795725 + MLT2B2 LTR ERVL 367 445 -70 515 321 43 45 chr1 23399560 23400002 -258793662 + L1MC4 LINE L1 7189 7629 -413 248 313 17 9 chr1 23400072 23400187 -258793477 - L1MC4 LINE L1 -467 7575 7460 282 132 0 0 chr1 23401337 23401390 -258792274 + (GA)n Simple_repeat Simple_repeat 1 53 0 249 151 0 0 chr1 23402880 23402933 -258790731 + GA-rich Low_complexity Low_complexity 1 53 0 345 47 0 0 chr1 23404437 23404480 -258789184 + (CA)n Simple_repeat Simple_repeat 2 44 0 261 0 0 0 chr1 23404479 23404508 -258789156 + (GA)n Simple_repeat Simple_repeat 2 30 0 * 17010 81 2 18 chr1 23406724 23409113 -258784551 + L1P LINE L1 875 3226 -2920 1748 158 0 0 chr1 23409833 23410106 -258783558 + AluSx SINE Alu 38 310 -2 298 232 42 42 chr1 23413241 23413336 -258780328 + L1MB5 LINE L1 6071 6165 -9 372 277 44 13 chr1 23414261 23414420 -258779244 - MIR SINE MIR -3 259 96 2042 112 11 0 chr1 23414569 23414855 -258778809 - AluSg SINE Alu -21 289 1 248 246 15 15 chr1 23417223 23417288 -258776376 - MIR SINE MIR -62 146 82 213 316 96 7 chr1 23418869 23419005 -258774659 - MER5A DNA MER1_type -28 161 14 283 269 95 0 chr1 23419032 23419131 -258774533 - MIR SINE MIR -67 141 47 1924 165 10 0 chr1 23419269 23419572 -258774092 - AluJo SINE Alu -6 306 1 3563 209 38 23 chr1 23419678 23420773 -258772891 - L1MB7 LINE L1 -26 6158 5041 243 321 86 1 chr1 23421408 23421554 -258772110 - MIR SINE MIR -73 189 34 1374 284 97 46 chr1 23421846 23422050 -258771614 - L1ME3 LINE L1 -1 6441 6249 2523 170 5 2 chr1 23422050 23422480 -258771184 - MSTB1 LTR MaLR -1 431 1 1374 284 97 46 chr1 23422480 23422535 -258771129 - L1ME3 LINE L1 -193 6249 6198 1943 118 38 14 chr1 23422535 23422824 -258770840 + AluSx SINE Alu 1 296 -16 1374 284 97 46 chr1 23422824 23423798 -258769866 - L1ME3 LINE L1 -244 6198 5142 1878 63 0 4 chr1 23423827 23424064 -258769600 + L1PA6 LINE L1 5909 6144 -10 954 262 112 16 chr1 23424872 23425356 -258768308 - L1ME3 LINE L1 -1288 5138 4609 2216 268 72 15 chr1 23425375 23425832 -258767832 - L1ME1 LINE L1 -6 6229 5800 5048 72 11 19 chr1 23425832 23426497 -258767167 + PABL_A LTR ERV1 2 660 0 2216 268 72 15 chr1 23426497 23426855 -258766809 - L1ME1 LINE L1 -435 5800 5367 248 176 153 0 chr1 23426833 23426918 -258766746 - L1ME3 LINE L1 -4334 2092 1995 * 219 69 0 0 chr1 23426920 23426949 -258766715 + (TA)n Simple_repeat Simple_repeat 2 30 0 327 96 0 0 chr1 23427078 23427130 -258766534 + (CA)n Simple_repeat Simple_repeat 2 53 0 1289 289 27 37 chr1 23427150 23427738 -258765926 - L1ME1 LINE L1 -1715 4711 4130 21 71 0 0 chr1 23427780 23427822 -258765842 + AT_rich Low_complexity Low_complexity 1 42 0 297 241 36 45 chr1 23427944 23428056 -258765608 - L1ME1 LINE L1 -3407 3019 2909 279 365 49 19 chr1 23428493 23428759 -258764905 - L1ME1 LINE L1 -5941 666 393 1908 233 70 28 chr1 23428897 23429522 -258764142 + MLT1E3 LTR MaLR 1 624 0 335 270 0 0 chr1 23430213 23430287 -258763377 - LTR16B LTR ERVL -390 74 1 591 285 45 20 chr1 23430308 23430508 -258763156 - ERVL LTR ERVL -3761 2003 1799 302 395 9 9 chr1 23430693 23430916 -258762748 - ERVL LTR ERVL -3546 1450 1228 538 243 94 48 chr1 23430954 23431240 -258762424 - LTR33 LTR ERVL -248 275 8 212 229 66 16 chr1 23431815 23431876 -258761788 + MIR3 SINE MIR 138 201 -7 1538 211 59 8 chr1 23432849 23433205 -258760459 + L1ME2 LINE L1 5528 5901 -263 532 251 36 90 chr1 23433313 23433592 -258760072 + MLT1E2-int LTR MaLR 1010 1273 -98 892 261 130 25 chr1 23433842 23434277 -258759387 + MLT1E2 LTR MaLR 137 654 0 282 29 0 0 chr1 23434342 23434377 -258759287 + (CAAT)n Simple_repeat Simple_repeat 2 36 0 1991 123 7 4 chr1 23434535 23434839 -258758825 + AluSq SINE Alu 9 313 0 316 245 61 55 chr1 23435166 23435329 -258758335 + L1MB8 LINE L1 5990 6153 -25 939 274 89 15 chr1 23435339 23435733 -258757931 + L1MCa LINE L1 21 443 -5983 * 3088 207 56 12 chr1 23435731 23437209 -258756455 + L1MC2 LINE L1 4721 6341 -3 313 250 0 26 chr1 23437675 23437831 -258755833 + GA-rich Low_complexity Low_complexity 4 155 0 224 302 0 0 chr1 23437931 23437994 -258755670 + GA-rich Low_complexity Low_complexity 3 65 0 425 49 0 16 chr1 23437995 23438056 -258755608 + (GGAA)n Simple_repeat Simple_repeat 1 60 0 190 364 26 0 chr1 23438568 23438645 -258755019 + L2 LINE L2 3230 3308 -5 196 271 0 0 chr1 23439128 23439176 -258754488 - L2 LINE L2 -1 3312 3265 542 262 43 0 chr1 23439532 23439673 -258753991 - L2 LINE L2 -797 2517 2371 912 120 15 130 chr1 23439724 23439924 -258753740 + AluJo SINE Alu 83 259 -53 386 248 35 9 chr1 23440155 23440268 -258753396 - MLT1I LTR MaLR -17 392 277 348 289 21 0 chr1 23440344 23440441 -258753223 - L2 LINE L2 0 3272 3174 1816 169 10 0 chr1 23440592 23440887 -258752777 + AluJb SINE Alu 1 298 -14 299 186 0 0 chr1 23441325 23441384 -258752280 - AluJo SINE Alu -166 136 78 253 292 9 26 chr1 23441424 23441537 -258752127 + L1ME LINE L1 4842 4952 -1194 1856 158 6 10 chr1 23441541 23441852 -258751812 + AluJb SINE Alu 1 310 -2 620 238 160 23 chr1 23441865 23441987 -258751677 + L1ME LINE L1 5047 5151 -1019 1806 174 3 7 chr1 23441987 23442291 -258751373 + AluJb SINE Alu 1 303 -9 620 238 160 23 chr1 23442291 23442691 -258750973 + L1ME LINE L1 5151 5623 -547 324 154 240 58 chr1 23442924 23442979 -258750685 + L1ME3A LINE L1 6037 6081 -89 1871 171 0 0 chr1 23442979 23443278 -258750386 - AluJb SINE Alu -11 301 3 324 154 240 58 chr1 23443278 23443326 -258750338 + L1ME3A LINE L1 6081 6159 -11 21 36 0 0 chr1 23444399 23444427 -258749237 + GC_rich Low_complexity Low_complexity 1 28 0 310 155 0 14 chr1 23444986 23445057 -258748607 + FLAM SINE Alu 63 132 -1 1670 134 0 0 chr1 23445190 23445436 -258748228 - AluSq SINE Alu -5 308 63 948 125 0 0 chr1 23445436 23445572 -258748092 - AluSg/x SINE Alu -40 272 137 401 255 159 13 chr1 23445952 23446109 -258747555 + MIR SINE MIR 76 255 -7 * 538 286 27 32 chr1 23446106 23446291 -258747373 - MIR SINE MIR 0 262 79 2135 103 3 3 chr1 23446292 23446583 -258747081 + AluSx SINE Alu 1 291 -21 2082 98 20 0 chr1 23446587 23446883 -258746781 + AluSp SINE Alu 3 304 -9 1210 80 0 0 chr1 23446883 23447045 -258746619 + AluY SINE Alu 133 294 -17 195 186 23 0 chr1 23448221 23448264 -258745400 + L2 LINE L2 3014 3057 -215 319 261 27 0 chr1 23448798 23448893 -258744771 - MIR SINE MIR -76 132 32 531 237 64 17 chr1 23448977 23449192 -258744472 + MIR SINE MIR 18 244 -18 326 248 0 41 chr1 23449520 23449623 -258744041 + MIR SINE MIR 73 152 -56 1987 123 24 0 chr1 23449669 23449961 -258743703 - AluSx SINE Alu -13 299 1 2105 121 10 3 chr1 23450452 23450758 -258742906 + AluSx SINE Alu 1 308 -4 697 197 23 15 chr1 23450767 23450899 -258742765 + FLAM_A SINE Alu 1 133 0 948 303 35 20 chr1 23450904 23451363 -258742301 + L1MC4a LINE L1 5420 5885 -1923 270 0 0 0 chr1 23451411 23451441 -258742223 + (TG)n Simple_repeat Simple_repeat 2 31 0 2218 107 0 0 chr1 23451498 23451798 -258741866 + AluSx SINE Alu 1 300 -12 228 111 0 0 chr1 23451978 23452014 -258741650 + (T)n Simple_repeat Simple_repeat 1 36 0 2281 106 0 0 chr1 23452047 23452359 -258741305 - AluSx SINE Alu 0 312 1 207 0 0 0 chr1 23452415 23452438 -258741226 + (CA)n Simple_repeat Simple_repeat 1 23 0 29 0 0 0 chr1 23456248 23456277 -258737387 + GC_rich Low_complexity Low_complexity 1 29 0 30 0 0 0 chr1 23456412 23456442 -258737222 + GC_rich Low_complexity Low_complexity 1 30 0 332 234 234 8 chr1 23458264 23458392 -258735272 + MIR3 SINE MIR 20 176 -32 727 300 22 22 chr1 23459127 23459357 -258734307 + MIR SINE MIR 20 249 -13 496 325 91 17 chr1 23460483 23460714 -258732950 + MIR SINE MIR 1 248 -14 217 379 106 0 chr1 23461481 23461613 -258732051 + MIR SINE MIR 110 255 -7 325 294 0 7 chr1 23462160 23462303 -258731361 + CT-rich Low_complexity Low_complexity 2 143 0 1156 123 21 16 chr1 23462547 23462734 -258730930 + MER53 DNA DNA 1 188 -1 335 186 0 0 chr1 23462982 23463041 -258730623 + L2 LINE L2 3254 3312 -1 226 283 0 0 chr1 23463622 23463675 -258729989 + (CTCA)n Simple_repeat Simple_repeat 3 55 0 361 299 39 39 chr1 23463727 23463881 -258729783 + MIR SINE MIR 31 184 -78 221 307 0 40 chr1 23465274 23465349 -258728315 + MIR3 SINE MIR 112 183 -25 696 213 0 0 chr1 23465424 23465551 -258728113 - AluJo SINE Alu -3 309 183 782 178 0 0 chr1 23465567 23465685 -258727979 - AluJo SINE Alu -184 118 1 209 239 98 76 chr1 23465836 23465928 -258727736 + MIR SINE MIR 20 113 -149 * 823 278 186 29 chr1 23465919 23466401 -258727263 + L2 LINE L2 2183 2588 -725 2382 75 0 19 chr1 23466401 23466709 -258726955 - AluSg SINE Alu -8 302 1 823 278 186 29 chr1 23466709 23466984 -258726680 + L2 LINE L2 2588 3059 -254 180 77 0 0 chr1 23467788 23467814 -258725850 + (CCCCCA)n Simple_repeat Simple_repeat 6 31 0 740 288 30 21 chr1 23468183 23468419 -258725245 + MIR SINE MIR 14 251 -11 476 300 29 8 chr1 23468896 23469044 -258724620 + MIR SINE MIR 16 172 -60 196 294 20 0 chr1 23469080 23469131 -258724533 + L2 LINE L2 3234 3285 -28 1726 92 119 8 chr1 23469385 23469646 -258724018 - AluSg SINE Alu -20 290 1 1147 45 0 0 chr1 23470233 23470365 -258723299 - AluY SINE Alu -179 132 1 1781 147 17 3 chr1 23470416 23470715 -258722949 - AluJb SINE Alu -9 303 1 406 265 155 27 chr1 23470927 23471146 -258722518 + MLT1J2 LTR MaLR 64 310 -140 258 347 0 20 chr1 23471644 23471742 -258721922 - MIR SINE MIR -92 116 21 1199 274 18 9 chr1 23471847 23472187 -258721477 + LTR16C LTR ERVL 149 491 0 3513 81 6 10 chr1 23472204 23472308 -258721356 + L1PB1 LINE L1 5200 5303 -848 2522 50 0 0 chr1 23472308 23472607 -258721057 + AluY SINE Alu 1 299 -12 3513 81 6 10 chr1 23472607 23473094 -258720570 + L1PB1 LINE L1 5303 5791 -360 210 191 0 0 chr1 23473101 23473143 -258720521 + (TATATG)n Simple_repeat Simple_repeat 3 44 0 2464 99 25 8 chr1 23473143 23473505 -258720159 + L1PB1 LINE L1 5782 6149 -2 312 206 82 0 chr1 23473597 23473634 -258720030 - MER113 DNA MER1_type? -416 105 72 2399 69 3 0 chr1 23473634 23473937 -258719727 + AluY SINE Alu 1 304 -7 312 206 82 0 chr1 23473937 23473996 -258719668 - MER113 DNA MER1_type? -449 72 1 1729 184 7 0 chr1 23474056 23474365 -258719299 - AluJb SINE Alu 0 312 2 2457 60 0 22 chr1 23474371 23474689 -258718975 - AluY SINE Alu 0 311 1 1671 195 10 0 chr1 23474692 23474990 -258718674 - AluJo SINE Alu -11 301 1 502 286 90 33 chr1 23475229 23475474 -258718190 + MIR SINE MIR 3 261 -1 279 170 89 185 chr1 23475612 23475685 -258717979 + L2 LINE L2 3150 3206 -66 2188 82 51 0 chr1 23475685 23475979 -258717685 - AluSp SINE Alu -4 309 1 279 170 89 185 chr1 23475979 23476040 -258717624 + L2 LINE L2 3206 3271 -1 1978 132 0 7 chr1 23476146 23476481 -258717183 - AluSx SINE Alu 0 333 1 334 218 178 10 chr1 23476486 23476587 -258717077 - MIR SINE MIR -74 188 71 283 272 193 26 chr1 23477844 23477958 -258715706 - MIR SINE MIR -118 144 12 528 254 146 5 chr1 23478156 23478341 -258715323 - MIR SINE MIR -16 246 36 909 46 23 0 chr1 23478808 23478939 -258714725 + (TCCA)n Simple_repeat Simple_repeat 2 135 0 232 318 119 8 chr1 23479759 23479885 -258713779 - MIR SINE MIR -20 242 103 200 297 47 0 chr1 23480873 23480937 -258712727 - MIR SINE MIR -171 91 25 2338 98 0 9 chr1 23481664 23481979 -258711685 - AluSx SINE Alu 0 312 1 511 255 37 31 chr1 23481981 23482142 -258711522 - MIR SINE MIR -68 194 33 180 289 19 0 chr1 23482293 23482345 -258711319 + MIR SINE MIR 100 152 -56 1955 152 154 14 chr1 23482538 23482972 -258710692 + MLT1F LTR MaLR 7 501 -41 857 146 104 0 chr1 23482972 23483116 -258710548 - AluJo/FRAM SINE Alu -21 291 133 1985 147 0 10 chr1 23483117 23483423 -258710241 - AluJo SINE Alu -9 303 1 2345 83 0 6 chr1 23483427 23483740 -258709924 - AluY SINE Alu 0 311 1 266 130 0 0 chr1 23483750 23483796 -258709868 + MLT1F LTR MaLR 497 542 0 696 216 14 0 chr1 23483871 23484019 -258709645 - MIR SINE MIR -109 153 4 203 286 19 20 chr1 23484449 23484556 -258709108 + MIR SINE MIR 46 146 -62 359 338 52 28 chr1 23484988 23485201 -258708463 - L2 LINE L2 -143 3129 2912 241 237 51 0 chr1 23485599 23485658 -258708006 - MIR SINE MIR -91 171 110 468 289 94 20 chr1 23487306 23487507 -258706157 - MIR SINE MIR 0 262 47 368 302 103 0 chr1 23488113 23488229 -258705435 + MIR SINE MIR 15 142 -120 1956 148 0 23 chr1 23488234 23488538 -258705126 + AluJb SINE Alu 1 297 -15 2248 106 0 22 chr1 23488540 23488851 -258704813 + AluSx SINE Alu 1 304 -8 251 53 0 26 chr1 23489263 23489301 -258704363 + (TTTC)n Simple_repeat Simple_repeat 2 38 0 306 324 60 33 chr1 23489653 23489835 -258703829 - MIR SINE MIR -50 212 26 512 308 68 30 chr1 23490267 23490504 -258703160 - MIR SINE MIR -8 254 9 211 218 77 51 chr1 23491556 23491634 -258702030 - MIR SINE MIR -79 183 104 193 292 44 44 chr1 23491707 23491820 -258701844 - MIR3 SINE MIR -2 206 94 643 210 0 8 chr1 23492762 23492881 -258700783 + Tigger1 DNA MER2_type 22 139 -2279 * 1336 126 19 0 chr1 23492877 23493091 -258700573 + Tigger1 DNA MER2_type 2200 2417 -1 2323 108 7 0 chr1 23493164 23493461 -258700203 + AluSx SINE Alu 1 299 -13 1426 146 130 0 chr1 23493471 23493724 -258699940 + AluJo SINE Alu 1 286 -26 246 287 13 60 chr1 23493735 23493885 -258699779 + L1ME3A LINE L1 5936 6078 -92 314 229 136 51 chr1 23494706 23494824 -258698840 - MIR SINE MIR -113 149 22 2195 123 3 3 chr1 23495309 23495610 -258698054 + AluSx SINE Alu 2 302 -10 717 247 75 34 chr1 23497060 23497385 -258696279 + L1ME3 LINE L1 5823 6162 0 612 195 17 0 chr1 23497404 23497522 -258696142 + FRAM SINE Alu 11 130 -46 319 326 167 0 chr1 23497803 23497935 -258695729 - MIR SINE MIR -7 255 102 2339 108 0 0 chr1 23498173 23498470 -258695194 - AluSx SINE Alu -15 297 1 1778 170 21 7 chr1 23498479 23498768 -258694896 - AluJo SINE Alu -19 293 1 2498 66 0 10 chr1 23499054 23499359 -258694305 + AluY SINE Alu 1 302 -9 2201 100 0 27 chr1 23499409 23499708 -258693956 + AluSx SINE Alu 1 291 -21 3117 69 7 22 chr1 23499709 23500159 -258693505 + LTR7 LTR ERV1 1 443 -7 1097 32 19 13 chr1 23500164 23500319 -258693345 + (GAAA)n Simple_repeat Simple_repeat 2 157 0 2549 72 0 0 chr1 23500319 23500623 -258693041 + AluY SINE Alu 2 305 -6 22 35 0 0 chr1 23500623 23500652 -258693012 + AT_rich Low_complexity Low_complexity 1 29 0 328 248 7 95 chr1 23500660 23500800 -258692864 + L1MC4 LINE L1 1977 6989 -1333 287 274 118 0 chr1 23501211 23501313 -258692351 - L2 LINE L2 -1 3312 3199 416 168 230 56 chr1 23501442 23501603 -258692061 - MER5A DNA MER1_type 0 189 1 280 271 23 47 chr1 23501779 23501908 -258691756 + L1ME4a LINE L1 5995 6120 -1 * 583 168 29 82 chr1 23501877 23502085 -258691579 + L1ME4a LINE L1 5904 6100 -21 22 100 0 9 chr1 23502340 23502403 -258691261 + AT_rich Low_complexity Low_complexity 1 64 -45 725 141 0 31 chr1 23502403 23502531 -258691133 + FLAM_A SINE Alu 1 124 -9 22 100 0 9 chr1 23502531 23502577 -258691087 + AT_rich Low_complexity Low_complexity 64 109 0 2437 76 17 0 chr1 23502611 23502912 -258690752 - AluSp SINE Alu -3 310 5 23 0 0 0 chr1 23502919 23502942 -258690722 + AT_rich Low_complexity Low_complexity 1 23 0 11785 93 30 11 chr1 23503698 23504211 -258689453 + MER41B-int LTR ERV1 4120 4621 -1325 2235 122 7 3 chr1 23504211 23504515 -258689149 - AluSx SINE Alu -7 305 1 11785 93 30 11 chr1 23504515 23505791 -258687873 + MER41B-int LTR ERV1 4621 5944 -2 3895 130 12 19 chr1 23505794 23505862 -258687802 + MER41B LTR ERV1 1 68 -567 2372 82 0 0 chr1 23505862 23506183 -258687481 + AluSg SINE Alu 1 321 0 3895 130 12 19 chr1 23506183 23506752 -258686912 + MER41B LTR ERV1 68 635 0 1598 148 10 96 chr1 23506773 23507171 -258686493 - L1MB8 LINE L1 0 6178 5815 458 143 0 41 chr1 23507172 23507270 -258686394 - L1MB5 LINE L1 0 6174 6081 1716 141 78 32 chr1 23507271 23507478 -258686186 - MLT1A1 LTR MaLR 0 365 134 207 0 0 0 chr1 23507487 23507510 -258686154 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 1957 173 0 3 chr1 23507510 23507800 -258685864 - AluJb SINE Alu -21 291 1 1716 141 78 32 chr1 23507800 23507939 -258685725 - MLT1A1 LTR MaLR -231 134 3 3178 220 76 25 chr1 23507941 23508088 -258685576 - MLT1A1-int LTR MaLR -1 1730 1592 2159 122 22 22 chr1 23508088 23508282 -258685382 + AluSx SINE Alu 1 197 -115 2397 58 13 26 chr1 23508282 23508591 -258685073 + AluY SINE Alu 1 305 -6 2159 122 22 22 chr1 23508591 23508708 -258684956 + AluSx SINE Alu 196 312 0 2381 95 0 0 chr1 23508716 23509011 -258684653 + AluSg1 SINE Alu 2 296 -13 3178 220 76 25 chr1 23509011 23509876 -258683788 - MLT1A1-int LTR MaLR -145 1586 546 1047 180 0 0 chr1 23509876 23510043 -258683621 - AluJb SINE Alu -10 302 136 2346 107 0 0 chr1 23510045 23510343 -258683321 - AluSx SINE Alu -14 298 1 655 146 0 0 chr1 23510362 23510465 -258683199 - MLT1A1 LTR MaLR -262 103 1 1399 160 80 7 chr1 23510465 23510753 -258682911 - L1MB7 LINE L1 -101 6083 5775 2754 29 7 0 chr1 23510926 23511235 -258682429 + AluY SINE Alu 1 311 0 319 269 81 87 chr1 23511311 23511460 -258682204 + L1ME4a LINE L1 5971 6118 -3 1020 245 141 35 chr1 23511972 23512397 -258681267 + L1ME3A LINE L1 5692 6161 -9 383 243 63 0 chr1 23512542 23512653 -258681011 - MIR SINE MIR -55 153 36 430 245 50 50 chr1 23512739 23512898 -258680766 - L1ME1 LINE L1 -68 6098 5940 * 530 276 36 20 chr1 23512883 23513079 -258680585 - L1M4 LINE L1 -1533 4613 4415 346 47 0 0 chr1 23513081 23513124 -258680540 + tRNA-Gln-CAG tRNA tRNA 1 43 -32 2158 127 37 0 chr1 23513195 23513495 -258680169 + AluSx SINE Alu 1 311 -1 684 272 34 24 chr1 23513530 23513736 -258679928 - L2 LINE L2 -933 2381 2174 332 294 0 0 chr1 23513762 23513864 -258679800 + L1M4 LINE L1 3947 4048 -2098 306 250 67 50 chr1 23515788 23515908 -258677756 - L2 LINE L2 -1 3271 3150 196 257 0 0 chr1 23515921 23515956 -258677708 - L2 LINE L2 -27 3286 3252 186 204 68 0 chr1 23516119 23516163 -258677501 - L2 LINE L2 -21 3292 3246 256 260 31 52 chr1 23516425 23516521 -258677143 - MIR SINE MIR -73 189 96 1410 149 107 104 chr1 23516823 23516865 -258676799 - MER57A LTR ERV1 0 403 363 2085 104 0 0 chr1 23516865 23517157 -258676507 + AluSc SINE Alu 21 312 0 1410 149 107 104 chr1 23517157 23517368 -258676296 - MER57A LTR ERV1 -40 363 145 2417 109 0 0 chr1 23517368 23517680 -258675984 + AluSx SINE Alu 1 312 0 1410 149 107 104 chr1 23517680 23517826 -258675838 - MER57A LTR ERV1 -258 145 1 1373 124 58 35 chr1 23517826 23518083 -258675581 - MER57A-int LTR ERV1 0 7537 7275 567 178 16 47 chr1 23518085 23518200 -258675464 - LTR54B LTR ERV1 -369 129 17 2094 124 7 10 chr1 23518200 23518498 -258675166 - AluSx SINE Alu -15 297 1 567 178 16 47 chr1 23518498 23518511 -258675153 - LTR54B LTR ERV1 -481 17 5 721 33 11 0 chr1 23518512 23518602 -258675062 - MER57-int LTR ERV1 -390 7147 7057 191 324 14 0 chr1 23518645 23518719 -258674945 + MIR SINE MIR 38 112 -96 322 164 45 0 chr1 23519286 23519353 -258674311 + L1ME3 LINE L1 5975 6044 -118 1058 111 0 0 chr1 23519353 23519497 -258674167 - AluSp/q SINE Alu -12 301 158 181 321 0 0 chr1 23519747 23519800 -258673864 + MER5A DNA MER1_type 81 133 -56 1967 142 48 7 chr1 23519800 23520089 -258673575 - AluJo SINE Alu -11 301 1 2133 94 14 0 chr1 23520123 23520399 -258673265 - AluSx SINE Alu -32 280 1 238 219 203 0 chr1 23520455 23520519 -258673145 - MIR3 SINE MIR -38 170 94 347 304 43 0 chr1 23521505 23521620 -258672044 + MIR SINE MIR 1 120 -142 318 248 156 9 chr1 23522421 23522530 -258671134 - MIR SINE MIR -107 155 31 2539 74 0 6 chr1 23523003 23523314 -258670350 + AluY SINE Alu 1 309 -2 183 268 0 0 chr1 23523317 23523373 -258670291 - MIR SINE MIR -142 120 65 1129 175 5 0 chr1 23523572 23523778 -258669886 - MIR SINE MIR 0 262 56 274 224 90 0 chr1 23524035 23524102 -258669562 - MIR SINE MIR -94 114 42 189 226 57 0 chr1 23524671 23524724 -258668940 - MIR SINE MIR -72 136 81 353 241 271 8 chr1 23524893 23525026 -258668638 - MIR SINE MIR -21 241 74 2538 76 0 0 chr1 23525763 23526067 -258667597 + AluY SINE Alu 1 304 -7 476 237 89 30 chr1 23526145 23526280 -258667384 + MLT1K LTR MaLR 2 144 -444 415 236 113 28 chr1 23526365 23526557 -258667107 + MLT1K LTR MaLR 397 581 -7 344 292 28 26 chr1 23526983 23527154 -258666510 - MIR3 SINE MIR -63 145 8 1750 169 14 10 chr1 23527331 23527626 -258666038 - AluJo SINE Alu -16 296 1 454 304 209 0 chr1 23527849 23528079 -258665585 - L2 LINE L2 -3 3310 3033 1714 134 36 0 chr1 23528686 23528939 -258664725 + AluJb SINE Alu 3 264 -48 2321 112 0 10 chr1 23529007 23529319 -258664345 - AluSq SINE Alu -2 311 3 245 304 128 10 chr1 23529396 23529498 -258664166 + MIR SINE MIR 77 190 -72 665 228 18 24 chr1 23529661 23529828 -258663836 - MIR SINE MIR -90 172 7 585 274 36 18 chr1 23529941 23530109 -258663555 - MIR3 SINE MIR -2 206 36 2327 111 3 0 chr1 23530469 23530775 -258662889 + AluSx SINE Alu 1 307 -5 1761 135 7 18 chr1 23531592 23531702 -258661962 + AluJo SINE Alu 26 136 -176 2343 87 19 16 chr1 23531702 23532012 -258661652 + AluSx SINE Alu 1 311 -1 1761 135 7 18 chr1 23532012 23532182 -258661482 + AluJo SINE Alu 136 303 -9 2097 136 3 16 chr1 23532885 23533201 -258660463 + AluJb SINE Alu 1 312 0 1114 190 164 23 chr1 23533444 23533707 -258659957 + AluSg SINE Alu 1 300 0 1972 139 10 3 chr1 23533748 23534042 -258659622 + AluJb SINE Alu 17 312 0 1997 151 7 3 chr1 23534204 23534503 -258659161 + AluSq SINE Alu 1 300 -13 2413 70 3 0 chr1 23534721 23535043 -258658621 + AluSp SINE Alu 1 323 0 251 282 92 44 chr1 23535296 23535590 -258658074 + L1M4 LINE L1 2678 2985 -3161 2054 109 0 0 chr1 23535612 23535879 -258657785 + AluSx SINE Alu 1 267 -45 454 125 62 0 chr1 23535980 23536060 -258657604 + AluSg/x SINE Alu 219 303 -9 2326 87 0 0 chr1 23536193 23536482 -258657182 - AluSq SINE Alu -13 300 14 231 306 14 0 chr1 23536534 23536606 -258657058 + L2 LINE L2 3200 3272 0 332 282 8 34 chr1 23537557 23537674 -258655990 + MIR SINE MIR 12 125 -137 1080 166 6 0 chr1 23537691 23537860 -258655804 - FAM SINE Alu -5 170 1 2427 73 0 0 chr1 23537898 23538201 -258655463 + AluSg SINE Alu 1 303 -7 266 222 44 56 chr1 23538349 23538439 -258655225 + MIR SINE MIR 33 121 -141 522 228 38 99 chr1 23538803 23538878 -258654786 + MIR SINE MIR 37 115 -147 2005 113 0 41 chr1 23538878 23539197 -258654467 - AluSx SINE Alu -6 306 1 522 228 38 99 chr1 23539197 23539332 -258654332 + MIR SINE MIR 115 234 -28 204 306 14 0 chr1 23539752 23539824 -258653840 + MIR SINE MIR 176 248 -14 2371 63 0 10 chr1 23539827 23540129 -258653535 + AluY SINE Alu 1 299 -12 327 222 42 0 chr1 23540262 23540334 -258653330 - L2 LINE L2 0 3313 3239 184 294 0 0 chr1 23540377 23540428 -258653236 - L2 LINE L2 -52 3261 3211 2070 82 4 0 chr1 23540738 23541008 -258652656 + AluSx SINE Alu 24 294 -18 195 366 65 0 chr1 23541009 23541102 -258652562 - L2 LINE L2 -21 3292 3194 339 338 124 0 chr1 23541300 23541445 -258652219 + MIR SINE MIR 47 209 -53 1944 102 61 0 chr1 23541451 23541744 -258651920 + AluY SINE Alu 1 311 0 1708 146 9 25 chr1 23541769 23542085 -258651579 + AluJo SINE Alu 2 312 0 217 259 19 0 chr1 23542110 23542164 -258651500 - MIR SINE MIR -79 129 75 2031 140 0 0 chr1 23542385 23542685 -258650979 - AluSx SINE Alu -12 300 1 384 311 178 23 chr1 23543675 23543894 -258649770 + MIR SINE MIR 1 253 -9 535 267 106 6 chr1 23544253 23544414 -258649250 + MER117 DNA MER1_type 18 194 -3 333 187 13 0 chr1 23544480 23544555 -258649109 - MIR SINE MIR -141 121 46 385 267 227 0 chr1 23544815 23544987 -258648677 + MIR SINE MIR 47 257 -5 1848 157 57 11 chr1 23544987 23545337 -258648327 + MER47A DNA MER2_type 1 366 0 449 252 43 0 chr1 23545642 23545757 -258647907 + MIR SINE MIR 112 231 -31 1901 128 0 29 chr1 23546020 23546367 -258647297 + AluJo SINE Alu 1 338 0 2058 112 0 0 chr1 23546511 23546798 -258646866 + AluSx SINE Alu 1 287 -25 550 237 119 0 chr1 23546837 23546955 -258646709 + FLAM_C SINE Alu 2 133 -10 220 224 0 60 chr1 23547308 23547375 -258646289 + MIR3 SINE MIR 110 172 -36 666 243 103 35 chr1 23548228 23548487 -258645177 - Charlie8 DNA MER1_type -1000 1417 64 411 189 122 0 chr1 23548667 23548757 -258644907 - MIR SINE MIR -68 140 40 502 281 51 36 chr1 23548871 23549067 -258644597 + MIR3 SINE MIR 6 204 -4 258 32 0 0 chr1 23549109 23549140 -258644524 + (TAA)n Simple_repeat Simple_repeat 2 32 0 337 237 161 0 chr1 23549561 23549654 -258644010 - MIR SINE MIR -85 123 16 392 251 161 14 chr1 23549798 23549952 -258643712 - MIR3 SINE MIR -35 173 21 262 301 9 35 chr1 23550239 23550352 -258643312 + MIR3 SINE MIR 5 114 -94 344 309 79 7 chr1 23550745 23550884 -258642780 - MIR SINE MIR -37 225 77 372 257 64 28 chr1 23551026 23551135 -258642529 + L2 LINE L2 3196 3308 -5 281 201 277 55 chr1 23551519 23551649 -258642015 + MIR SINE MIR 8 161 -47 206 254 16 0 chr1 23552840 23552903 -258640761 + C-rich Low_complexity Low_complexity 1 64 0 262 146 24 12 chr1 23553073 23553155 -258640509 + C-rich Low_complexity Low_complexity 6 88 0 381 221 29 37 chr1 23553391 23553527 -258640137 + (TCTCTG)n Simple_repeat Simple_repeat 5 139 0 249 331 139 7 chr1 23553783 23553934 -258639730 + MIR SINE MIR 36 206 -56 260 149 43 0 chr1 23554095 23554142 -258639522 - L3 LINE CR1 -108 1469 1421 297 221 128 12 chr1 23554270 23554356 -258639308 - MIR3 SINE MIR -54 154 59 409 166 137 68 chr1 23554378 23554583 -258639081 - MER113 DNA MER1_type? -300 221 3 2002 138 0 7 chr1 23554838 23555142 -258638522 - AluJb SINE Alu -10 302 1 335 294 129 12 chr1 23555447 23555617 -258638047 + MIR3 SINE MIR 16 205 -3 246 254 151 38 chr1 23555750 23555924 -258637740 - MIR3 SINE MIR -56 152 8 870 203 0 0 chr1 23555993 23556151 -258637513 + FRAM SINE Alu 1 158 -18 2199 116 3 0 chr1 23556192 23556502 -258637162 + AluSx SINE Alu 1 311 -1 235 188 62 0 chr1 23556949 23556997 -258636667 - MIR SINE MIR -98 164 114 561 267 56 95 chr1 23557162 23557334 -258636330 - L2 LINE L2 -2 3311 3134 1914 108 0 44 chr1 23557334 23557655 -258636009 + AluSx SINE Alu 1 308 0 2030 90 0 11 chr1 23557655 23557934 -258635730 + AluSc SINE Alu 1 276 -33 198 71 0 0 chr1 23557942 23557970 -258635694 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 561 267 56 95 chr1 23557970 23558145 -258635519 - L2 LINE L2 -185 3128 2967 773 167 0 36 chr1 23558768 23558906 -258634758 + FLAM_A SINE Alu 1 133 0 6972 54 9 16 chr1 23558923 23560397 -258633267 + SVA Other Other 3 1386 0 257 336 82 14 chr1 23560556 23560764 -258632900 - L2 LINE L2 -1162 2152 1931 204 344 62 47 chr1 23560871 23560999 -258632665 - L2 LINE L2 -4 3268 3139 308 257 27 0 chr1 23561008 23561082 -258632582 - L1MB3 LINE L1 -227 5956 5881 252 59 0 0 chr1 23561106 23561140 -258632524 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2082 112 26 0 chr1 23561308 23561611 -258632053 - AluSx SINE Alu -1 311 1 2024 126 3 28 chr1 23561791 23562109 -258631555 - AluSx SINE Alu -2 310 1 314 267 35 79 chr1 23562977 23563063 -258630601 - MLT1K LTR MaLR -26 562 474 1703 132 0 135 chr1 23563063 23563412 -258630252 + AluJb SINE Alu 1 302 0 314 267 35 79 chr1 23563412 23563527 -258630137 - MLT1K LTR MaLR -114 474 370 264 167 0 0 chr1 23563569 23563617 -258630047 + A-rich Low_complexity Low_complexity 1 48 0 351 317 92 7 chr1 23563903 23564045 -258629619 - L1ME4a LINE L1 -5 6116 5963 390 236 211 12 chr1 23564107 23564268 -258629396 - MIR SINE MIR -1 261 69 698 228 85 16 chr1 23564711 23564900 -258628764 + MIR SINE MIR 24 225 -37 835 151 157 27 chr1 23565566 23565751 -258627913 + MSTC LTR MaLR 1 209 -219 977 161 0 0 chr1 23565772 23565927 -258627737 + FRAM SINE Alu 18 172 -4 1184 163 64 0 chr1 23565927 23566129 -258627535 + MSTC LTR MaLR 214 428 0 291 54 0 0 chr1 23566213 23566250 -258627414 + (CA)n Simple_repeat Simple_repeat 1 37 0 225 321 24 24 chr1 23567423 23567507 -258626157 + MIR3 SINE MIR 114 197 -11 2396 91 0 0 chr1 23567553 23567862 -258625802 - AluSx SINE Alu -3 309 1 282 56 0 0 chr1 23568485 23568521 -258625143 + (TC)n Simple_repeat Simple_repeat 2 37 0 2306 91 0 0 chr1 23568580 23568878 -258624786 + AluSg SINE Alu 1 298 -12 1898 161 0 3 chr1 23569326 23569624 -258624040 - AluJb SINE Alu -15 297 1 262 192 96 0 chr1 23569630 23569703 -258623961 + MER113 DNA MER1_type? 106 185 -336 250 286 24 0 chr1 23569752 23569836 -258623828 + MER113 DNA MER1_type? 381 466 -55 267 306 83 28 chr1 23569870 23569978 -258623686 + L2 LINE L2 3144 3257 -15 360 316 15 23 chr1 23570585 23570718 -258622946 + MIR3 SINE MIR 10 141 -67 1312 145 4 26 chr1 23570726 23570953 -258622711 + AluJo SINE Alu 12 233 -79 324 257 0 14 chr1 23570953 23571027 -258622637 - LTR28 LTR ERV1 0 1020 948 2583 218 137 33 chr1 23571077 23571892 -258621772 - LTR28 LTR ERV1 -69 951 3 512 117 0 0 chr1 23571893 23571970 -258621694 + AluJo SINE Alu 231 307 -5 1986 143 0 10 chr1 23572057 23572364 -258621300 - AluSx SINE Alu -8 304 1 2453 72 0 0 chr1 23572441 23572747 -258620917 - AluY SINE Alu -5 306 1 182 111 0 0 chr1 23572881 23572908 -258620756 - L2 LINE L2 -23 3290 3264 413 325 109 25 chr1 23573296 23573835 -258619829 + L2 LINE L2 2468 3058 -214 927 168 47 0 chr1 23573934 23574083 -258619581 - FRAM SINE Alu -9 157 2 1356 86 0 11 chr1 23574087 23574273 -258619391 - AluY SINE Alu -17 294 111 304 119 0 0 chr1 23624273 23624315 -258569349 - Alu SINE Alu -256 45 4 1005 150 4 78 chr1 23624461 23624701 -258568963 - AluJb SINE Alu -15 297 2 1528 158 26 0 chr1 23624703 23624937 -258568727 + AluJo SINE Alu 55 294 -18 732 102 39 8 chr1 23625589 23625716 -258567948 + AluSp/q SINE Alu 180 310 -3 251 263 86 40 chr1 23625775 23625973 -258567691 + L1ME LINE L1 5706 5912 -209 2616 226 69 3 chr1 23627152 23627757 -258565907 - MER82 DNA MER2_type -8 645 1 198 304 214 0 chr1 23627836 23627948 -258565716 + MIR3 SINE MIR 37 172 -36 21 0 0 0 chr1 23628021 23628042 -258565622 + AT_rich Low_complexity Low_complexity 1 21 0 40 37 0 0 chr1 23628742 23628796 -258564868 + AT_rich Low_complexity Low_complexity 1 54 0 207 0 0 0 chr1 23630707 23630730 -258562934 + (CA)n Simple_repeat Simple_repeat 1 23 0 294 279 50 9 chr1 23630734 23630899 -258562765 - MLT1L LTR MaLR -60 528 353 227 274 0 0 chr1 23631508 23631570 -258562094 + MIR SINE MIR 82 143 -65 1351 186 39 81 chr1 23631859 23632241 -258561423 + MLT1A2 LTR MaLR 8 373 -1 1064 240 102 0 chr1 23632248 23632552 -258561112 - MER89 LTR ERV1 -24 535 201 446 266 70 0 chr1 23633022 23633150 -258560514 + MIR SINE MIR 123 259 -3 195 42 0 0 chr1 23633311 23633335 -258560329 + (TTTTTA)n Simple_repeat Simple_repeat 3 26 0 1857 156 81 36 chr1 23634266 23634357 -258559307 - L1MB7 LINE L1 -314 5870 5785 1499 203 7 32 chr1 23634357 23634546 -258559118 - AluJo SINE Alu -10 302 123 2462 59 3 0 chr1 23634546 23634835 -258558829 + AluY SINE Alu 1 290 -21 1499 203 7 32 chr1 23634835 23634955 -258558709 - AluJo SINE Alu -189 123 1 1826 173 0 3 chr1 23634958 23635278 -258558386 - AluJo SINE Alu 0 319 1 1857 156 81 36 chr1 23635278 23635599 -258558065 - L1MB7 LINE L1 -400 5784 5434 1077 259 90 32 chr1 23635601 23636107 -258557557 - L2 LINE L2 -8 3305 2772 2411 105 0 3 chr1 23636108 23636421 -258557243 + AluSx SINE Alu 1 312 0 2352 108 22 40 chr1 23636654 23637025 -258556639 - THE1B LTR MaLR 0 364 1 2095 71 0 4 chr1 23637407 23637661 -258556003 - AluY SINE Alu -58 253 1 1344 144 36 0 chr1 23637661 23637855 -258555809 - AluSx SINE Alu -111 201 1 632 135 199 7 chr1 23637857 23637998 -258555666 + MLT1A1-int LTR MaLR 1563 1730 -5 1744 150 81 32 chr1 23638004 23638142 -258555522 + MLT1A1 LTR MaLR 3 133 -232 1847 184 3 3 chr1 23638142 23638431 -258555233 + AluJb SINE Alu 1 292 -20 207 0 0 0 chr1 23638431 23638454 -258555210 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 1744 150 81 32 chr1 23638463 23638670 -258554994 + MLT1A1 LTR MaLR 133 365 0 481 143 0 41 chr1 23638671 23638769 -258554895 + L1MB5 LINE L1 6081 6174 0 1591 148 10 96 chr1 23638770 23639168 -258554496 + L1MB8 LINE L1 5815 6178 0 3966 132 17 22 chr1 23639189 23639757 -258553907 - MER41B LTR ERV1 0 635 68 2356 82 0 0 chr1 23639757 23640078 -258553586 - AluSg SINE Alu 0 321 1 3966 132 17 22 chr1 23640078 23640146 -258553518 - MER41B LTR ERV1 -567 68 1 11824 93 30 11 chr1 23640149 23641425 -258552239 - MER41B-int LTR ERV1 -2 5944 4621 2230 122 7 3 chr1 23641425 23641729 -258551935 + AluSx SINE Alu 1 305 -7 11824 93 30 11 chr1 23641729 23642242 -258551422 - MER41B-int LTR ERV1 -1325 4621 4120 2005 141 35 28 chr1 23643815 23644192 -258549472 - MER41B-int LTR ERV1 -1808 4138 3582 1958 113 7 29 chr1 23644192 23644466 -258549198 + AluSx SINE Alu 1 268 -44 2005 141 35 28 chr1 23644466 23644556 -258549108 - MER41B-int LTR ERV1 -2364 3582 3494 3864 136 5 0 chr1 23644565 23645166 -258548498 - LTR10E LTR ERV1 -29 604 1 15573 148 47 70 chr1 23645166 23645372 -258548292 - MER41B-int LTR ERV1 -2447 3499 3290 2461 93 3 0 chr1 23645372 23645683 -258547981 - AluSx SINE Alu 0 312 1 15573 148 47 70 chr1 23645683 23646273 -258547391 - MER41B-int LTR ERV1 -2656 3290 2688 2565 68 3 0 chr1 23646273 23646580 -258547084 - AluY SINE Alu -3 308 1 15573 148 47 70 chr1 23646580 23646619 -258547045 - MER41B-int LTR ERV1 -3258 2688 2650 2252 125 0 19 chr1 23646619 23646932 -258546732 - AluSx SINE Alu -5 307 1 15573 148 47 70 chr1 23646932 23647443 -258546221 - MER41B-int LTR ERV1 -3296 2650 2129 2430 88 0 10 chr1 23647443 23647751 -258545913 + AluSg SINE Alu 1 305 -5 15573 148 47 70 chr1 23647751 23648307 -258545357 - MER41B-int LTR ERV1 -3817 2129 1562 2180 117 7 0 chr1 23648307 23648606 -258545058 - AluSx SINE Alu -11 301 1 15573 148 47 70 chr1 23648606 23648744 -258544920 - MER41B-int LTR ERV1 -4384 1562 1422 1791 136 38 79 chr1 23648744 23649135 -258544529 + THE1C LTR MaLR 1 375 0 15573 148 47 70 chr1 23649135 23649519 -258544145 - MER41B-int LTR ERV1 -4524 1422 1031 2087 78 95 0 chr1 23649519 23649803 -258543861 + AluY SINE Alu 1 311 0 15573 148 47 70 chr1 23649803 23650628 -258543036 - MER41B-int LTR ERV1 -4915 1031 331 842 149 0 8 chr1 23650628 23650762 -258542902 - FLAM_C SINE Alu 0 133 1 15573 148 47 70 chr1 23650762 23651086 -258542578 - MER41B-int LTR ERV1 -5615 331 1 2471 144 9 19 chr1 23651086 23651157 -258542507 - MER41B LTR ERV1 0 635 565 2263 106 0 10 chr1 23651157 23651460 -258542204 + AluSx SINE Alu 1 300 -12 2471 144 9 19 chr1 23651460 23651811 -258541853 - MER41B LTR ERV1 -70 565 217 189 0 0 0 chr1 23651811 23651832 -258541832 + (T)n Simple_repeat Simple_repeat 1 21 0 6831 60 24 42 chr1 23651851 23652823 -258540841 - SVA Other Other 0 1386 433 5225 75 49 60 chr1 23652836 23654274 -258539390 - SVA Other Other -518 868 57 1028 31 0 8 chr1 23654274 23654403 -258539261 + (GGGAGA)n Simple_repeat Simple_repeat 1 128 0 1145 118 76 14 chr1 23654403 23654452 -258539212 - MER41B LTR ERV1 -411 224 179 2044 138 7 0 chr1 23654452 23654742 -258538922 - AluSx SINE Alu -20 292 1 1145 118 76 14 chr1 23654742 23654903 -258538761 - MER41B LTR ERV1 -456 179 1 414 202 83 101 chr1 23654906 23655031 -258538633 + L1MC4 LINE L1 7789 7912 -130 1016 164 5 59 chr1 23655031 23655109 -258538555 - MER3 DNA MER1_type 0 209 128 2202 77 7 14 chr1 23655109 23655396 -258538268 + AluY SINE Alu 23 307 -4 1016 164 5 59 chr1 23655396 23655536 -258538128 - MER3 DNA MER1_type -81 128 3 414 202 83 101 chr1 23655536 23655578 -258538086 + L1MC4 LINE L1 7912 7953 -89 1931 191 68 23 chr1 23655635 23656074 -258537590 + LTR2B LTR ERV1 32 490 0 3371 140 115 31 chr1 23656122 23656772 -258536892 + MER50 LTR ERV1 7 711 -23 550 269 0 21 chr1 23657050 23657195 -258536469 + MIR SINE MIR 29 170 -92 313 250 65 28 chr1 23657863 23657971 -258535693 + MIR SINE MIR 41 152 -110 386 213 147 88 chr1 23658018 23658063 -258535601 + MIR SINE MIR 119 160 -102 2258 90 0 0 chr1 23658063 23658368 -258535296 + AluSg SINE Alu 1 305 0 386 213 147 88 chr1 23658368 23658455 -258535209 + MIR SINE MIR 160 262 0 2201 131 0 0 chr1 23658466 23658764 -258534900 - AluSx SINE Alu -14 298 1 384 163 12 23 chr1 23658851 23658937 -258534727 + MER46C DNA MER2_type 30 114 -224 2503 60 3 16 chr1 23658961 23659276 -258534388 + AluY SINE Alu 1 311 0 465 215 0 0 chr1 23659340 23659433 -258534231 + MER46C DNA MER2_type 246 338 0 619 263 172 30 chr1 23659568 23659975 -258533689 - LTR67 LTR ERVL -9 548 84 551 258 93 44 chr1 23660198 23660423 -258533241 - MIR SINE MIR -20 242 7 511 252 7 7 chr1 23660423 23660558 -258533106 + MER117 DNA MER1_type 5 139 -58 869 245 61 0 chr1 23660559 23660837 -258532827 + L1 LINE L1 2649 2943 -3203 1038 170 0 0 chr1 23660837 23661002 -258532662 + FAM SINE Alu 10 174 -11 467 253 16 102 chr1 23661002 23661071 -258532593 + L1 LINE L1 2967 3040 -3106 2045 83 4 15 chr1 23661071 23661336 -258532328 + AluY SINE Alu 34 295 -16 467 253 16 102 chr1 23661336 23661510 -258532154 + L1 LINE L1 3040 3217 -2929 575 239 75 28 chr1 23661725 23661938 -258531726 - MLT1K LTR MaLR 0 588 366 236 217 29 29 chr1 23662024 23662093 -258531571 - MLT1K LTR MaLR -376 173 105 393 266 0 21 chr1 23662343 23662437 -258531227 + L1MC4 LINE L1 6615 6706 -1336 1955 155 0 14 chr1 23662437 23662734 -258530930 + AluJo SINE Alu 1 293 -19 306 218 35 58 chr1 23662734 23662749 -258530915 - L1MC3 LINE L1 -1209 6576 6562 2484 73 0 13 chr1 23662762 23663075 -258530589 - AluY SINE Alu -2 309 1 461 272 43 82 chr1 23663087 23663319 -258530345 - L1M4 LINE L1 -2145 4001 3779 1662 173 20 10 chr1 23663337 23663638 -258530026 + AluJo SINE Alu 1 304 -8 271 204 60 59 chr1 23663658 23663728 -258529936 - L1P LINE L1 -2383 3763 3695 252 0 0 0 chr1 23663728 23663756 -258529908 + (CTTTG)n Simple_repeat Simple_repeat 2 29 0 1885 147 0 3 chr1 23663760 23664045 -258529619 - AluJb SINE Alu -28 284 1 271 204 60 59 chr1 23664045 23664135 -258529529 - L1P LINE L1 -2453 3693 3606 200 382 0 45 chr1 23664364 23664474 -258529190 + MIR3 SINE MIR 104 208 0 1550 137 9 0 chr1 23664528 23664747 -258528917 + AluJb SINE Alu 83 303 -9 949 116 0 58 chr1 23665345 23665517 -258528147 - L1PA5 LINE L1 0 6154 5993 1147 92 0 12 chr1 23665522 23665686 -258527978 - L1PA5 LINE L1 0 6154 5993 1006 180 0 17 chr1 23665686 23665864 -258527800 - FRAM SINE Alu -2 174 1 1926 111 11 4 chr1 23666313 23666584 -258527080 - AluSq SINE Alu -40 273 1 465 204 43 0 chr1 23666621 23666714 -258526950 - MIR SINE MIR -77 185 89 1593 127 79 0 chr1 23666760 23666989 -258526675 - AluJo SINE Alu -32 280 34 2390 110 0 0 chr1 23667244 23667552 -258526112 - AluSx SINE Alu -4 308 1 258 322 11 0 chr1 23667557 23667644 -258526020 - MIR SINE MIR -60 148 61 204 322 63 42 chr1 23667749 23667892 -258525772 - MIR SINE MIR -71 191 46 519 230 22 7 chr1 23667925 23668060 -258525604 - L2 LINE L2 -7 3306 3170 213 262 98 16 chr1 23668091 23668152 -258525512 + L3 LINE CR1 574 639 -938 180 111 0 0 chr1 23668384 23668411 -258525253 + (GGAA)n Simple_repeat Simple_repeat 4 30 0 2149 121 0 7 chr1 23668547 23668844 -258524820 - AluSx SINE Alu -17 295 1 2371 157 60 27 chr1 23668856 23668930 -258524734 - L1MB7 LINE L1 0 6184 6114 2574 58 0 10 chr1 23668930 23669241 -258524423 - AluY SINE Alu -3 308 1 2371 157 60 27 chr1 23669241 23669651 -258524013 - L1MB7 LINE L1 -70 6114 5684 1779 158 14 11 chr1 23669654 23669939 -258523725 - AluJo SINE Alu -10 302 17 1464 159 60 19 chr1 23669945 23669965 -258523699 - L1MB7 LINE L1 -1 6183 6165 2370 98 0 0 chr1 23669965 23670260 -258523404 + AluSq SINE Alu 1 295 -18 1464 159 60 19 chr1 23670260 23670553 -258523111 - L1MB7 LINE L1 -19 6165 5857 991 144 7 0 chr1 23670668 23670814 -258522850 + AluSx SINE Alu 58 204 -108 7881 118 8 2 chr1 23670814 23671956 -258521708 + THE1A-int LTR MaLR 432 1580 0 2446 102 11 8 chr1 23671956 23672308 -258521356 + THE1A LTR MaLR 1 353 -2 729 184 9 0 chr1 23672309 23672423 -258521241 - AluJb SINE Alu -197 115 1 256 236 34 45 chr1 23672423 23672512 -258521152 + L1MC4 LINE L1 7815 7902 -140 2592 56 0 13 chr1 23672637 23672942 -258520722 + AluSp SINE Alu 1 301 -12 394 306 68 38 chr1 23672951 23673186 -258520478 + L1M2 LINE L1 4428 4669 -1477 646 151 118 34 chr1 23673194 23673313 -258520351 + FLAM_C SINE Alu 3 131 -2 306 77 0 0 chr1 23673358 23673397 -258520267 - MER4A LTR ERV1 -72 592 554 379 322 48 26 chr1 23673442 23674042 -258519622 + L1M2 LINE L1 4824 5435 -749 297 0 0 0 chr1 23674288 23674321 -258519343 + (TA)n Simple_repeat Simple_repeat 2 34 0 2399 143 2 27 chr1 23674403 23674815 -258518849 + L1MC1 LINE L1 5450 5851 -482 2539 56 0 16 chr1 23674815 23675118 -258518546 + AluY SINE Alu 1 298 -13 189 0 0 0 chr1 23675212 23675233 -258518431 + (CTGGGG)n Simple_repeat Simple_repeat 2 22 0 231 276 13 13 chr1 23675233 23675304 -258518360 - L2 LINE L2 -778 2536 2466 2100 121 3 33 chr1 23675346 23675653 -258518011 + AluSx SINE Alu 1 298 -14 222 37 0 0 chr1 23676627 23676654 -258517010 + (TG)n Simple_repeat Simple_repeat 1 27 0 370 303 35 35 chr1 23677302 23677427 -258516237 - L1ME4a LINE L1 -11 6110 5983 2398 106 0 0 chr1 23677427 23677738 -258515926 - AluSq SINE Alu -2 311 1 370 303 35 35 chr1 23677738 23677754 -258515910 - L1ME4a LINE L1 -137 5984 5969 2382 90 3 0 chr1 23677924 23678224 -258515440 - AluY SINE Alu -10 301 1 21 0 0 0 chr1 23678224 23678245 -258515419 + AT_rich Low_complexity Low_complexity 1 21 0 1239 159 72 0 chr1 23678535 23678743 -258514921 - AluJo SINE Alu -15 297 75 228 241 19 0 chr1 23678795 23678849 -258514815 - L1ME4a LINE L1 -699 5660 5606 524 259 103 84 chr1 23678859 23678900 -258514764 - L1ME4a LINE L1 -229 5892 5853 2045 113 13 13 chr1 23678900 23679209 -258514455 - AluSx SINE Alu -2 310 2 524 259 103 84 chr1 23679209 23679488 -258514176 - L1ME4a LINE L1 -268 5853 5566 1419 173 36 28 chr1 23679654 23679770 -258513894 - AluJb SINE Alu -62 250 136 2629 36 7 0 chr1 23679770 23680071 -258513593 - AluY SINE Alu -8 303 1 1419 173 36 28 chr1 23680071 23680202 -258513462 - AluJb SINE Alu -176 136 1 935 203 15 71 chr1 23680202 23680336 -258513328 + L1MB8 LINE L1 5917 6030 -148 2220 77 13 37 chr1 23680336 23680634 -258513030 - AluY SINE Alu -8 303 13 935 203 15 71 chr1 23680634 23680765 -258512899 + L1MB8 LINE L1 6030 6167 -11 1730 138 47 25 chr1 23680775 23680918 -258512746 + AluJo SINE Alu 1 139 -173 1824 153 0 88 chr1 23680918 23681258 -258512406 + AluJb SINE Alu 3 312 0 1043 168 62 43 chr1 23681196 23681405 -258512259 + AluJo SINE Alu 85 297 -15 1730 138 47 25 chr1 23681258 23681390 -258512274 + AluJo SINE Alu 139 282 -30 303 273 71 71 chr1 23681409 23681512 -258512152 - L2 LINE L2 -69 3244 3143 2498 90 7 0 chr1 23681512 23681822 -258511842 + AluSq SINE Alu 1 312 -1 303 273 71 71 chr1 23681822 23681985 -258511679 - L2 LINE L2 -170 3143 2989 428 316 0 9 chr1 23682814 23682928 -258510736 - MER5B DNA MER1_type -65 113 1 235 162 0 0 chr1 23682928 23682962 -258510702 - MIR3 SINE MIR -53 155 122 1719 149 22 7 chr1 23682966 23683277 -258510387 + AluJb SINE Alu 6 320 0 510 281 7 14 chr1 23683420 23683566 -258510098 + MIR SINE MIR 15 159 -103 1817 141 3 33 chr1 23683901 23684207 -258509457 + AluSx SINE Alu 1 297 -15 290 392 7 40 chr1 23684610 23684758 -258508906 + L3 LINE CR1 1434 1576 -1 240 59 0 0 chr1 23684825 23684859 -258508805 + (A)n Simple_repeat Simple_repeat 1 34 0 736 159 7 43 chr1 23685066 23685204 -258508460 + FLAM_A SINE Alu 1 133 0 2100 125 0 7 chr1 23685224 23685520 -258508144 + AluSx SINE Alu 1 294 -18 858 223 45 18 chr1 23685603 23685823 -258507841 + MIR SINE MIR 37 262 0 180 0 0 0 chr1 23685950 23685970 -258507694 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1073 121 148 157 chr1 23686552 23686676 -258506988 - AluJo SINE Alu 0 302 178 2290 85 7 3 chr1 23686676 23686983 -258506681 - AluSc SINE Alu -1 308 1 1073 121 148 157 chr1 23686983 23687015 -258506649 - AluJo SINE Alu -124 178 147 2366 100 0 0 chr1 23687015 23687325 -258506339 + AluSq SINE Alu 1 310 -3 1073 121 148 157 chr1 23687325 23687472 -258506192 - AluJo SINE Alu -155 147 1 816 238 92 55 chr1 23688476 23688804 -258504860 + MLT1K LTR MaLR 164 503 -85 572 267 28 44 chr1 23689069 23689249 -258504415 + MIR SINE MIR 76 252 -10 1764 102 12 0 chr1 23689728 23689983 -258503681 - AluSx SINE Alu 0 312 55 2053 116 13 7 chr1 23689996 23690299 -258503365 - AluSx SINE Alu -7 305 1 566 234 119 13 chr1 23690314 23690540 -258503124 - L1ME3A LINE L1 -5 6165 5916 398 274 67 7 chr1 23690593 23690728 -258502936 - MIR SINE MIR -62 200 58 360 0 0 0 chr1 23692316 23692356 -258501308 + (CA)n Simple_repeat Simple_repeat 2 41 0 229 232 21 21 chr1 23692380 23692475 -258501189 + (CA)n Simple_repeat Simple_repeat 2 96 0 354 169 0 0 chr1 23692581 23692646 -258501018 + (CA)n Simple_repeat Simple_repeat 2 66 0 22 0 0 0 chr1 23692961 23692983 -258500681 + GC_rich Low_complexity Low_complexity 1 22 0 374 329 43 19 chr1 23694783 23694944 -258498720 + MIR SINE MIR 8 172 -90 222 170 0 21 chr1 23695394 23695441 -258498223 - L2 LINE L2 -211 3061 3016 488 55 0 14 chr1 23695883 23695956 -258497708 + (TG)n Simple_repeat Simple_repeat 2 73 0 288 284 0 0 chr1 23696161 23696242 -258497422 - MIR SINE MIR -87 121 41 304 331 124 0 chr1 23696384 23696553 -258497111 + MIR SINE MIR 1 190 -72 834 143 8 0 chr1 23696595 23696721 -258496943 + FLAM_C SINE Alu 3 129 -4 390 317 91 41 chr1 23697190 23697685 -258495979 - L2 LINE L2 0 3272 2736 1819 121 31 7 chr1 23697685 23697974 -258495690 - AluSx SINE Alu -16 296 1 390 317 91 41 chr1 23697974 23698128 -258495536 - L2 LINE L2 -536 2736 2591 270 269 231 0 chr1 23698936 23699044 -258494620 - MIR SINE MIR -19 243 111 285 250 0 0 chr1 23699326 23699386 -258494278 - MIR SINE MIR -119 89 30 376 316 44 7 chr1 23699800 23699936 -258493728 + MIR3 SINE MIR 50 190 -18 632 306 48 10 chr1 23699947 23700156 -258493508 + MIR SINE MIR 3 219 -43 260 372 48 30 chr1 23700673 23700904 -258492760 + MIR SINE MIR 28 262 0 833 264 160 24 chr1 23700969 23701468 -258492196 - L1ME2 LINE L1 0 6164 5598 1612 91 0 183 chr1 23701468 23701693 -258491971 - AluSc SINE Alu -5 304 172 2247 57 0 11 chr1 23701693 23701972 -258491692 - AluY SINE Alu -35 276 1 1612 91 0 183 chr1 23701972 23702118 -258491546 - AluSc SINE Alu -137 172 1 1693 155 10 17 chr1 23702128 23702424 -258491240 - AluJo SINE Alu -10 302 9 333 241 0 35 chr1 23702616 23702703 -258490961 + MIR3 SINE MIR 71 154 -54 285 312 19 13 chr1 23702966 23703098 -258490566 + MIR SINE MIR 34 135 -73 * 387 308 143 29 chr1 23703095 23703654 -258490010 - L2 LINE L2 -59 3254 2640 477 273 168 6 chr1 23704251 23704412 -258489252 - MIR3 SINE MIR -3 205 19 678 261 42 50 chr1 23704425 23704666 -258488998 + MIR SINE MIR 24 262 0 2236 98 0 7 chr1 23704684 23704981 -258488683 - AluSx SINE Alu -17 295 1 477 311 108 19 chr1 23705352 23705564 -258488100 + MIR SINE MIR 2 232 -30 873 131 12 6 chr1 23705773 23705941 -258487723 + C-rich Low_complexity Low_complexity 1 169 0 800 270 52 20 chr1 23705947 23706195 -258487469 + MIR SINE MIR 7 262 0 184 188 0 104 chr1 23706395 23706443 -258487221 + L2 LINE L2 421 463 -2851 908 252 43 4 chr1 23706691 23706921 -258486743 - MIR SINE MIR 0 262 24 1577 144 30 46 chr1 23706921 23707099 -258486565 - AluJb SINE Alu -12 300 128 2242 97 0 10 chr1 23707099 23707410 -258486254 - AluSc SINE Alu -1 308 1 1577 144 30 46 chr1 23707410 23707536 -258486128 - AluJb SINE Alu -184 128 1 203 343 0 14 chr1 23707904 23707974 -258485690 - L2 LINE L2 -82 3190 3122 1994 132 23 7 chr1 23708000 23708304 -258485360 + AluSx SINE Alu 1 309 -3 216 0 0 0 chr1 23708373 23708397 -258485267 + (A)n Simple_repeat Simple_repeat 1 24 0 219 184 0 0 chr1 23708451 23708500 -258485164 - L2 LINE L2 -238 3034 2986 * 356 241 39 42 chr1 23708487 23708597 -258485067 - MIR SINE MIR -122 86 3 535 321 37 27 chr1 23708909 23709096 -258484568 - MIR SINE MIR -52 210 22 521 309 23 17 chr1 23709232 23709407 -258484257 - MER5A DNA MER1_type 0 189 14 362 236 104 9 chr1 23709594 23709700 -258483964 - MIR SINE MIR -74 134 19 2358 93 0 3 chr1 23709741 23710051 -258483613 - AluSq SINE Alu -4 309 1 225 195 0 0 chr1 23710119 23710160 -258483504 - MIR SINE MIR -3 259 219 222 215 200 0 chr1 23710128 23710193 -258483471 - L2 LINE L2 -18 3254 3177 * 328 308 180 21 chr1 23710278 23710422 -258483242 - L2 LINE L2 -220 3052 2932 1767 106 26 162 chr1 23710422 23710810 -258482854 - MER1B DNA MER1_type 0 337 3 328 308 180 21 chr1 23710810 23711169 -258482495 - L2 LINE L2 -340 2932 2480 216 240 30 60 chr1 23711173 23711273 -258482391 - MIR SINE MIR -60 148 52 620 261 28 17 chr1 23712764 23712940 -258480724 - MIR SINE MIR -6 256 79 928 171 6 45 chr1 23714231 23714407 -258479257 + FAM SINE Alu 2 170 -5 2079 125 0 13 chr1 23714409 23714720 -258478944 + AluSx SINE Alu 1 307 -5 532 250 59 86 chr1 23714724 23714861 -258478803 + L2 LINE L2 3077 3216 -97 333 0 0 0 chr1 23714861 23714898 -258478766 + (TTTTA)n Simple_repeat Simple_repeat 2 38 0 844 232 7 0 chr1 23714901 23715052 -258478612 - FRAM SINE Alu -14 152 1 532 250 59 86 chr1 23715052 23715130 -258478534 + L2 LINE L2 3218 3290 -23 249 226 95 12 chr1 23716330 23716414 -258477250 + MIR3 SINE MIR 100 190 -18 349 292 48 48 chr1 23716511 23716619 -258477045 + MIR SINE MIR 46 153 -109 2228 83 0 0 chr1 23716619 23716895 -258476769 + AluSx SINE Alu 5 280 -32 234 0 0 0 chr1 23716895 23716921 -258476743 + (CAAT)n Simple_repeat Simple_repeat 4 29 0 349 292 48 48 chr1 23716921 23717024 -258476640 + MIR SINE MIR 151 259 -3 700 293 20 10 chr1 23717325 23717523 -258476141 + MIR SINE MIR 20 219 -43 592 224 138 15 chr1 23717817 23718013 -258475651 + MIR SINE MIR 8 227 -35 360 328 107 28 chr1 23718119 23718296 -258475368 - MIR SINE MIR -13 249 59 1292 153 56 0 chr1 23718384 23718600 -258475064 - MER30 DNA MER1_type -2 228 1 2002 125 3 3 chr1 23719173 23719468 -258474196 - AluSx SINE Alu -17 295 1 300 313 80 0 chr1 23719916 23720028 -258473636 - MIR3 SINE MIR -1 207 87 204 327 19 56 chr1 23721169 23721276 -258472388 - MIR SINE MIR -34 228 126 597 77 0 0 chr1 23721546 23721624 -258472040 - AluS SINE Alu -235 78 1 294 333 29 11 chr1 23721733 23721907 -258471757 - L1ME LINE L1 -326 5844 5668 2236 103 0 16 chr1 23721957 23722269 -258471395 + AluSx SINE Alu 1 307 -5 275 278 67 11 chr1 23722355 23722445 -258471219 + L2 LINE L2 3200 3294 -19 301 320 238 6 chr1 23722466 23722638 -258471026 - MIR SINE MIR -31 231 20 2196 113 13 0 chr1 23722718 23723019 -258470645 - AluSx SINE Alu -7 305 1 538 270 37 5 chr1 23723278 23723466 -258470198 + MIR SINE MIR 34 235 -27 303 315 11 0 chr1 23723541 23723630 -258470034 - L2 LINE L2 -207 3065 2976 454 293 149 2 chr1 23724297 23724495 -258469169 + MIR SINE MIR 33 256 -6 602 236 82 11 chr1 23724718 23724900 -258468764 - MIR SINE MIR -55 207 13 568 274 28 17 chr1 23725427 23725606 -258468058 + MIR SINE MIR 9 189 -73 582 302 16 0 chr1 23725617 23725799 -258467865 - MIR SINE MIR -44 218 34 936 193 0 6 chr1 23725893 23726064 -258467600 - AluJo/FRAM SINE Alu -9 303 134 1714 170 0 26 chr1 23726064 23726370 -258467294 - AluJo SINE Alu -9 303 6 26 0 0 27 chr1 23726374 23726389 -258467275 + AT_rich Low_complexity Low_complexity 1 15 -21 2226 113 3 0 chr1 23726389 23726689 -258466975 - AluSx SINE Alu -11 301 1 26 0 0 27 chr1 23726689 23726710 -258466954 + AT_rich Low_complexity Low_complexity 15 36 0 1875 132 17 7 chr1 23726710 23726998 -258466666 - AluJb SINE Alu -21 291 1 972 113 0 0 chr1 23727007 23727140 -258466524 - FLAM_C SINE Alu 0 133 1 355 290 119 15 chr1 23727956 23728225 -258465439 + MLT1K LTR MaLR 37 333 -255 2498 34 3 34 chr1 23728436 23728757 -258464907 + AluY SINE Alu 1 311 0 1062 240 32 0 chr1 23729056 23729277 -258464387 - MIR SINE MIR -21 241 14 378 263 0 0 chr1 23729849 23729925 -258463739 - MIR SINE MIR -111 151 76 236 284 86 60 chr1 23730312 23730428 -258463236 - L2 LINE L2 -237 3035 2917 511 292 22 49 chr1 23731016 23731201 -258462463 - MIR SINE MIR -14 248 69 289 263 173 30 chr1 23731525 23731658 -258462006 + MIR3 SINE MIR 2 153 -55 466 268 101 24 chr1 23731770 23731898 -258461766 + MIR SINE MIR 12 164 -98 2241 68 13 23 chr1 23731898 23732205 -258461459 + AluSq SINE Alu 1 304 -9 466 268 101 24 chr1 23732205 23732285 -258461379 + MIR SINE MIR 164 236 -26 474 226 58 22 chr1 23732287 23732424 -258461240 + L2 LINE L2 3172 3313 0 253 236 0 0 chr1 23733157 23733212 -258460452 - L2 LINE L2 0 3272 3218 767 215 105 11 chr1 23733299 23733490 -258460174 + MER3 DNA MER1_type 1 209 0 238 300 50 0 chr1 23733632 23733712 -258459952 - Charlie8 DNA MER1_type -1956 461 378 885 178 75 54 chr1 23733713 23733954 -258459710 - L1ME2 LINE L1 0 6164 5919 637 292 77 50 chr1 23733956 23734185 -258459479 - Charlie8 DNA MER1_type -2030 387 166 2514 55 0 3 chr1 23734185 23734497 -258459167 - AluY SINE Alu 0 311 1 637 292 77 50 chr1 23734497 23734580 -258459084 - Charlie8 DNA MER1_type -2251 166 87 1884 153 0 7 chr1 23734580 23734887 -258458777 + AluSx SINE Alu 1 305 -7 637 292 77 50 chr1 23734887 23734950 -258458714 - Charlie8 DNA MER1_type -2330 87 1 808 277 77 8 chr1 23734977 23735212 -258458452 - MIR SINE MIR 0 262 12 206 323 15 0 chr1 23735988 23736053 -258457611 + MIR SINE MIR 197 262 0 * 374 256 62 56 chr1 23736035 23736195 -258457469 - MIR SINE MIR -49 213 53 227 333 14 0 chr1 23736170 23736242 -258457422 + MIR SINE MIR 165 237 -25 * 417 240 30 0 chr1 23736532 23736632 -258457032 + MIR SINE MIR 80 182 -80 1842 131 12 44 chr1 23736676 23736996 -258456668 - AluJb SINE Alu -1 311 2 2281 39 7 3 chr1 23737008 23737318 -258456346 - AluY SINE Alu 0 311 1 320 282 40 9 chr1 23737573 23737750 -258455914 - MIR SINE MIR 0 262 18 2009 136 0 3 chr1 23737795 23738090 -258455574 + AluSx SINE Alu 1 294 -18 311 285 54 23 chr1 23738117 23738247 -258455417 - MIR SINE MIR -50 212 79 588 153 105 0 chr1 23738744 23738868 -258454796 - MIR SINE MIR -37 225 89 220 324 29 48 chr1 23738947 23739052 -258454612 - MIR SINE MIR -90 118 16 481 266 72 14 chr1 23739080 23739219 -258454445 + MIR SINE MIR 56 202 -60 368 271 0 0 chr1 23739775 23739860 -258453804 + MIR SINE MIR 47 131 -131 381 320 6 70 chr1 23739949 23740121 -258453543 - MIR SINE MIR -22 240 80 1734 167 6 13 chr1 23740391 23740702 -258452962 + AluJo SINE Alu 1 309 -3 2208 98 0 16 chr1 23740706 23741011 -258452653 + AluSx SINE Alu 13 312 0 351 259 35 0 chr1 23741825 23741910 -258451754 + MIR SINE MIR 94 181 -81 1655 172 7 17 chr1 23741964 23742289 -258451375 - AluJo SINE Alu 0 336 15 259 275 38 21 chr1 23742604 23742734 -258450930 - MIR SINE MIR -67 141 19 708 211 0 0 chr1 23743168 23743301 -258450363 - FLAM_A SINE Alu 0 133 1 791 205 58 44 chr1 23743302 23743507 -258450157 - MIR SINE MIR -50 212 5 222 269 26 13 chr1 23744342 23744420 -258449244 + MIR SINE MIR 18 96 -112 211 355 0 64 chr1 23744466 23744576 -258449088 + MIR SINE MIR 51 153 -109 267 291 94 8 chr1 23745319 23745436 -258448228 + MIR SINE MIR 90 216 -46 388 291 160 57 chr1 23745838 23746350 -258447314 - L2 LINE L2 -9 3304 2846 1625 159 36 17 chr1 23746350 23746530 -258447134 - AluJb SINE Alu -5 307 117 206 32 32 0 chr1 23746530 23746561 -258447103 + (TA)n Simple_repeat Simple_repeat 2 33 0 1625 159 36 17 chr1 23746561 23746681 -258446983 - AluJb SINE Alu -195 117 1 388 291 160 57 chr1 23746681 23746693 -258446971 - L2 LINE L2 -467 2846 2837 2004 128 0 17 chr1 23746693 23746991 -258446673 - AluSx SINE Alu -19 293 1 388 291 160 57 chr1 23746991 23747084 -258446580 - L2 LINE L2 -476 2837 2617 201 260 167 0 chr1 23747041 23747137 -258446527 + MIR SINE MIR 21 132 -76 * 27 81 0 0 chr1 23748171 23748233 -258445431 + GC_rich Low_complexity Low_complexity 1 62 0 31 0 0 0 chr1 23748264 23748295 -258445369 + GC_rich Low_complexity Low_complexity 1 31 0 212 174 0 22 chr1 23748531 23748577 -258445087 + C-rich Low_complexity Low_complexity 2 46 0 349 241 0 46 chr1 23748835 23748922 -258444742 - MER81 DNA DNA -31 83 1 345 268 26 74 chr1 23749567 23749757 -258443907 - MIR SINE MIR -41 221 41 292 289 126 0 chr1 23750033 23750162 -258443502 + MIR SINE MIR 11 154 -54 2107 102 0 0 chr1 23750975 23751287 -258442377 - AluSx SINE Alu 0 312 1 21 0 0 0 chr1 23751497 23751518 -258442146 + AT_rich Low_complexity Low_complexity 1 21 0 1847 117 62 7 chr1 23751585 23751876 -258441788 - AluJb SINE Alu 0 312 6 417 340 75 20 chr1 23751953 23752153 -258441511 + MIR SINE MIR 23 233 -29 2179 125 3 0 chr1 23752510 23752821 -258440843 - AluSx SINE Alu 0 312 1 1062 142 6 6 chr1 23752821 23752990 -258440674 - FRAM SINE Alu -10 166 1 255 197 182 0 chr1 23753138 23753204 -258440460 - MIR SINE MIR -56 152 75 312 266 0 57 chr1 23753971 23754095 -258439569 + CT-rich Low_complexity Low_complexity 1 117 0 182 233 23 0 chr1 23754916 23754959 -258438705 + MIR SINE MIR 141 184 -78 2283 86 0 19 chr1 23754960 23755275 -258438389 + AluSx SINE Alu 1 309 -3 2239 90 0 13 chr1 23755286 23755596 -258438068 + AluY SINE Alu 1 306 -5 204 296 0 28 chr1 23755684 23755755 -258437909 + CT-rich Low_complexity Low_complexity 1 69 0 2164 128 0 0 chr1 23755913 23756225 -258437439 - AluSx SINE Alu 0 312 1 1952 139 0 10 chr1 23756225 23756526 -258437138 - AluJb SINE Alu -14 298 1 1990 84 0 0 chr1 23756566 23756846 -258436818 + AluSg SINE Alu 31 310 0 315 0 0 0 chr1 23757304 23757339 -258436325 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 2102 92 0 3 chr1 23757341 23757624 -258436040 - AluSx SINE Alu -30 282 1 284 286 0 12 chr1 23758055 23758139 -258435525 + L2 LINE L2 2973 3055 -217 383 243 53 45 chr1 23758576 23758747 -258434917 + MIR SINE MIR 28 144 -64 423 267 89 14 chr1 23759537 23759683 -258433981 + MIR SINE MIR 47 203 -59 333 239 64 9 chr1 23759867 23759976 -258433688 - MIR SINE MIR -53 209 95 189 217 43 0 chr1 23760725 23760771 -258432893 + L2 LINE L2 3264 3311 -2 211 218 18 0 chr1 23760910 23760965 -258432699 + (TG)n Simple_repeat Simple_repeat 1 56 0 1679 117 23 99 chr1 23761513 23761855 -258431809 + AluYb8 SINE Alu 1 316 -2 294 289 107 91 chr1 23762180 23762205 -258431459 - L2 LINE L2 -2 3270 3247 2163 100 23 3 chr1 23762205 23762504 -258431160 + AluSx SINE Alu 1 305 -7 294 289 107 91 chr1 23762504 23762731 -258430933 - L2 LINE L2 -25 3247 3014 2320 84 0 0 chr1 23762920 23763218 -258430446 - AluSq SINE Alu -15 298 1 408 295 39 32 chr1 23764009 23764165 -258429499 - MIR SINE MIR -78 184 28 286 249 141 60 chr1 23764282 23764467 -258429197 + MIR SINE MIR 24 223 -39 742 143 0 0 chr1 23764686 23764798 -258428866 - AluSp/q SINE Alu -41 272 161 378 108 0 4 chr1 23764800 23764866 -258428798 - Alu SINE Alu -250 50 2 444 174 0 0 chr1 23765148 23765240 -258428424 + (CA)n Simple_repeat Simple_repeat 2 93 0 203 152 0 0 chr1 23765282 23765315 -258428349 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 2230 97 0 3 chr1 23765939 23766237 -258427427 + AluSx SINE Alu 1 297 -15 560 304 89 8 chr1 23766239 23766476 -258427188 + MIR SINE MIR 3 258 -4 475 231 131 6 chr1 23767669 23767829 -258425835 + MIR SINE MIR 47 226 -36 226 301 203 8 chr1 23767973 23768096 -258425568 - MIR3 SINE MIR -59 149 3 440 276 51 19 chr1 23768208 23768364 -258425300 - MIR SINE MIR -32 230 70 485 294 38 80 chr1 23768671 23768909 -258424755 + MIR SINE MIR 21 248 -14 273 349 27 34 chr1 23768938 23769084 -258424580 + MIR SINE MIR 49 193 -69 363 314 131 11 chr1 23769181 23769372 -258424292 - MIR SINE MIR -48 214 1 190 255 21 0 chr1 23769954 23770001 -258423663 + MIR SINE MIR 69 116 -92 1419 177 55 50 chr1 23770857 23770901 -258422763 - MLT1A1 LTR MaLR -2 363 321 2555 105 5 30 chr1 23770901 23771274 -258422390 + THE1B LTR MaLR 1 364 0 1419 177 55 50 chr1 23771274 23771590 -258422074 - MLT1A1 LTR MaLR -44 321 1 208 275 88 38 chr1 23771693 23771773 -258421891 + MIR SINE MIR 30 113 -95 291 305 62 23 chr1 23771881 23772009 -258421655 + MIR SINE MIR 50 182 -80 2091 108 0 0 chr1 23772982 23773270 -258420394 - AluSx SINE Alu -13 299 12 612 277 89 57 chr1 23773337 23773673 -258419991 - L2 LINE L2 -1 3312 2966 244 209 0 0 chr1 23773741 23773802 -258419862 - MER106A DNA MER1_type -76 160 118 2251 85 0 0 chr1 23773916 23774210 -258419454 + AluSx SINE Alu 1 294 -18 277 268 232 72 chr1 23774297 23774603 -258419061 + L2 LINE L2 2306 2660 -654 2283 95 3 0 chr1 23774877 23775183 -258418481 + AluSc SINE Alu 1 307 -2 322 308 42 17 chr1 23776836 23776956 -258416708 - L2 LINE L2 -18 3254 3132 226 244 192 13 chr1 23777064 23777142 -258416522 + L2 LINE L2 3200 3291 -22 247 330 75 28 chr1 23777927 23778139 -258415525 - MIR SINE MIR -9 253 32 267 303 21 7 chr1 23778406 23778551 -258415113 + (TG)n Simple_repeat Simple_repeat 1 147 0 1466 171 15 11 chr1 23778990 23779253 -258414411 + AluJo SINE Alu 27 290 -22 345 284 0 0 chr1 23779568 23779649 -258414015 - MIR SINE MIR -85 123 43 450 292 13 2 chr1 23780263 23780414 -258413250 + MIR SINE MIR 16 166 -65 431 319 21 0 chr1 23780483 23780624 -258413040 - MIR SINE MIR -50 212 69 458 281 62 28 chr1 23781316 23781494 -258412170 - MIR SINE MIR -58 204 21 184 397 121 20 chr1 23781605 23781804 -258411860 - L2 LINE L2 -51 3221 3003 2095 123 0 7 chr1 23781955 23782257 -258411407 - AluSx SINE Alu -12 300 1 509 307 20 7 chr1 23782639 23782792 -258410872 - MIR SINE MIR -39 223 69 290 172 0 24 chr1 23784180 23784246 -258409418 - Alu SINE Alu -259 43 1 2412 87 0 0 chr1 23784432 23784742 -258408922 - AluSg SINE Alu 0 310 1 2297 69 0 3 chr1 23784747 23785050 -258408614 - AluY SINE Alu -9 302 1 2215 88 0 0 chr1 23785174 23785496 -258408168 + AluSx SINE Alu 1 322 0 2095 115 0 10 chr1 23786995 23787300 -258406364 - AluSx SINE Alu -9 303 2 273 289 29 32 chr1 23787428 23787509 -258406155 + MIR SINE MIR 47 126 -115 2259 74 0 0 chr1 23787509 23787805 -258405859 - AluY SINE Alu -15 296 1 273 289 29 32 chr1 23787805 23787864 -258405800 + MIR SINE MIR 126 184 -57 196 212 30 61 chr1 23788059 23788125 -258405539 - MIR SINE MIR -2 260 197 1611 129 30 75 chr1 23788252 23788452 -258405212 + L1MB3 LINE L1 5857 6064 -119 1969 122 3 29 chr1 23788452 23788764 -258404900 + AluSx SINE Alu 1 304 -8 1611 129 30 75 chr1 23788764 23788837 -258404827 + L1MB3 LINE L1 6064 6115 -68 1581 164 61 11 chr1 23788837 23789117 -258404547 - AluJb SINE Alu -18 294 1 1611 129 30 75 chr1 23789117 23789174 -258404490 + L1MB3 LINE L1 6115 6173 -10 1981 89 0 0 chr1 23789176 23789434 -258404230 - AluSx SINE Alu -18 294 37 2090 117 0 10 chr1 23789605 23789913 -258403751 + AluSg SINE Alu 1 305 -5 2064 123 0 10 chr1 23790057 23790357 -258403307 + AluSx SINE Alu 1 297 -15 687 270 5 37 chr1 23790573 23790762 -258402902 - MIR SINE MIR -63 199 17 392 364 28 0 chr1 23790771 23790914 -258402750 + MIR SINE MIR 108 254 -8 193 270 16 32 chr1 23790984 23791047 -258402617 - L3 LINE CR1 -72 1505 1444 706 251 4 70 chr1 23791463 23791577 -258402087 + MIR SINE MIR 51 144 -118 1412 183 28 17 chr1 23791577 23791867 -258401797 + AluJo SINE Alu 1 293 -19 706 251 4 70 chr1 23791867 23791979 -258401685 + MIR SINE MIR 144 262 0 2197 119 3 0 chr1 23792002 23792312 -258401352 - AluSx SINE Alu 0 312 2 23 0 0 0 chr1 23792317 23792340 -258401324 + AT_rich Low_complexity Low_complexity 1 23 0 863 128 0 16 chr1 23792422 23792547 -258401117 - FLAM_C SINE Alu -9 124 2 369 305 19 13 chr1 23792708 23792862 -258400802 - L1ME4a LINE L1 -239 5882 5728 270 315 56 28 chr1 23793162 23793270 -258400394 - L2 LINE L2 -11 3261 3151 285 175 70 0 chr1 23793762 23793819 -258399845 - MIR SINE MIR -68 194 134 379 226 24 0 chr1 23794926 23795010 -258398654 - MIR3 SINE MIR -54 154 69 515 178 158 0 chr1 23795012 23795113 -258398551 + AluJo SINE Alu 1 117 -185 27 0 0 0 chr1 23795114 23795141 -258398523 + AT_rich Low_complexity Low_complexity 1 27 0 443 257 42 35 chr1 23795304 23795448 -258398216 - MIR SINE MIR -105 157 13 358 133 13 53 chr1 23795493 23795568 -258398096 + L1MB2 LINE L1 5972 6043 -128 947 145 0 67 chr1 23795568 23795747 -258397917 + AluJo SINE Alu 122 288 -24 392 213 44 37 chr1 23796016 23796152 -258397512 + MIR SINE MIR 44 180 -82 253 315 107 51 chr1 23796244 23796422 -258397242 + MIR SINE MIR 20 207 -55 447 189 8 90 chr1 23796766 23796806 -258396858 + MIR SINE MIR 29 71 -191 1927 136 0 7 chr1 23796806 23797107 -258396557 + AluSx SINE Alu 1 299 -13 447 189 8 90 chr1 23797107 23797188 -258396476 + MIR SINE MIR 71 140 -122 1469 92 5 0 chr1 23797195 23797391 -258396273 + AluSq SINE Alu 1 197 -116 212 356 7 67 chr1 23797476 23797625 -258396039 + L2 LINE L2 3133 3272 0 424 208 0 104 chr1 23797954 23798023 -258395641 - L1ME2 LINE L1 -1 6163 6088 1995 139 3 0 chr1 23798023 23798325 -258395339 - AluSx SINE Alu -9 303 1 2154 109 6 10 chr1 23798329 23798642 -258395022 - AluSx SINE Alu 0 312 1 424 208 0 104 chr1 23798642 23798711 -258394953 - L1ME2 LINE L1 -79 6085 6035 192 77 0 0 chr1 23798731 23798757 -258394907 + (A)n Simple_repeat Simple_repeat 1 26 0 838 247 50 18 chr1 23798888 23799107 -258394557 - L1ME2 LINE L1 -242 5920 5695 300 317 137 0 chr1 23799182 23799343 -258394321 + MER91A DNA MER1_type 1 183 -13 1830 130 6 62 chr1 23799398 23799722 -258393942 + AluJb SINE Alu 1 306 -6 283 346 99 28 chr1 23799886 23800097 -258393567 + MIR SINE MIR 14 239 -23 402 259 68 34 chr1 23801332 23801479 -258392185 - MER103 DNA DNA -13 153 2 2210 94 3 0 chr1 23801863 23802161 -258391503 - AluSp SINE Alu -12 301 3 339 219 180 8 chr1 23802373 23802501 -258391163 - L2 LINE L2 -214 3058 2909 630 136 0 0 chr1 23803373 23803461 -258390203 - AluSg/x SINE Alu -22 288 201 1811 181 0 0 chr1 23803752 23804051 -258389613 + AluJo SINE Alu 1 299 -13 709 189 74 37 chr1 23804134 23804243 -258389421 - MER3 DNA MER1_type -8 201 81 2187 102 3 7 chr1 23804243 23804548 -258389116 + AluSx SINE Alu 1 304 -8 709 189 74 37 chr1 23804548 23804628 -258389036 - MER3 DNA MER1_type -128 81 5 227 293 13 27 chr1 23805079 23805154 -258388510 - MIR SINE MIR -82 180 107 259 319 28 42 chr1 23805487 23805552 -258388112 + MER5B DNA MER1_type 3 67 -111 2214 88 0 23 chr1 23805552 23805857 -258387807 + AluSx SINE Alu 1 298 -14 259 319 28 42 chr1 23805857 23805935 -258387729 + MER5B DNA MER1_type 67 144 -34 1738 165 3 3 chr1 23805939 23806242 -258387422 + AluJo SINE Alu 8 310 -2 1447 165 165 4 chr1 23806617 23806871 -258386793 + AluJb SINE Alu 1 295 -7 2073 126 0 0 chr1 23806889 23807183 -258386481 + AluSx SINE Alu 1 294 -18 1845 85 4 4 chr1 23807404 23807650 -258386014 + AluSp SINE Alu 2 247 -66 3579 155 29 60 chr1 23807678 23807845 -258385819 - Charlie1 DNA MER1_type -201 2560 2389 2062 95 0 40 chr1 23807845 23808149 -258385515 + AluSg1 SINE Alu 1 292 -17 3579 155 29 60 chr1 23808149 23808319 -258385345 - Charlie1 DNA MER1_type -372 2389 2215 1731 130 31 99 chr1 23808319 23808642 -258385022 - AluJb SINE Alu -1 301 1 3579 155 29 60 chr1 23808642 23809122 -258384542 - Charlie1 DNA MER1_type -546 2215 1767 1026 176 0 11 chr1 23809167 23809349 -258384315 + AluJo SINE Alu 121 300 -12 2233 68 3 3 chr1 23809395 23809688 -258383976 + AluY SINE Alu 6 298 -13 2030 131 7 10 chr1 23809714 23810020 -258383644 - AluSx SINE Alu 0 312 8 241 306 58 0 chr1 23810046 23810167 -258383497 - L1MC/D LINE L1 -1980 5828 5701 858 189 0 0 chr1 23810168 23810321 -258383343 + AluJb SINE Alu 138 290 -22 363 360 35 35 chr1 23810901 23811098 -258382566 + MIR SINE MIR 44 240 -22 1070 164 44 102 chr1 23811383 23811507 -258382157 + AluJo SINE Alu 1 103 -209 2003 113 7 0 chr1 23811507 23811809 -258381855 + AluSx SINE Alu 1 304 0 1070 164 44 102 chr1 23811809 23811958 -258381706 + AluJo SINE Alu 103 259 -53 370 371 24 6 chr1 23812038 23812208 -258381456 + MIR SINE MIR 19 191 -71 2010 128 10 13 chr1 23812536 23812848 -258380816 + AluSx SINE Alu 1 311 -1 296 274 227 13 chr1 23813624 23813785 -258379879 + MIR SINE MIR 11 197 -65 284 306 56 9 chr1 23813988 23814096 -258379568 - MIR SINE MIR -82 180 68 789 289 140 61 chr1 23814135 23814633 -258379031 - L2 LINE L2 -96 3217 2760 2023 116 0 77 chr1 23814633 23814767 -258378897 + AluSx SINE Alu 1 144 -168 2046 109 0 0 chr1 23814767 23815051 -258378613 + AluSg1 SINE Alu 1 284 -25 2023 116 0 77 chr1 23815051 23815253 -258378411 + AluSx SINE Alu 144 311 -1 1801 145 20 7 chr1 23815260 23815557 -258378107 + AluJb SINE Alu 3 303 -9 788 274 9 31 chr1 23815558 23815665 -258377999 + MER58A DNA MER1_type 4 112 -2308 2316 91 0 3 chr1 23815665 23815972 -258377692 - AluSx SINE Alu -6 306 1 788 274 9 31 chr1 23815972 23816090 -258377574 + MER58A DNA MER1_type 112 224 0 789 289 140 61 chr1 23816090 23816538 -258377126 - L2 LINE L2 -557 2756 2178 227 342 140 9 chr1 23816919 23817033 -258376631 + L3 LINE CR1 1438 1566 -11 1746 156 0 7 chr1 23817059 23817342 -258376322 + AluSx SINE Alu 1 281 -31 1904 138 3 7 chr1 23817722 23818018 -258375646 - AluSx SINE Alu -17 295 1 1748 171 3 13 chr1 23818018 23818317 -258375347 - AluJb SINE Alu -16 296 1 2231 92 0 13 chr1 23819640 23819945 -258373719 + AluSx SINE Alu 1 301 -11 2058 132 3 0 chr1 23821633 23821929 -258371735 + AluSx SINE Alu 1 297 -15 2227 109 0 0 chr1 23821929 23822231 -258371433 + AluSx SINE Alu 1 303 -9 341 240 149 8 chr1 23822261 23822382 -258371282 + L2 LINE L2 2924 3061 -211 1584 140 198 12 chr1 23822423 23822751 -258370913 - MLT1C LTR MaLR 0 467 79 1940 102 0 4 chr1 23822751 23823017 -258370647 - AluSp SINE Alu -7 306 42 322 309 9 109 chr1 23823331 23823427 -258370237 + L1M4 LINE L1 4404 4508 -1638 2404 70 0 0 chr1 23823427 23823726 -258369938 + AluY SINE Alu 1 299 -12 322 309 9 109 chr1 23823726 23823796 -258369868 + L1M4 LINE L1 4508 4547 -1599 1774 109 4 43 chr1 23823796 23824072 -258369592 + AluSq SINE Alu 2 266 -47 322 309 9 109 chr1 23824072 23824114 -258369550 + L1M4 LINE L1 4547 4592 -1554 342 284 54 50 chr1 23824134 23824261 -258369403 + L1M4 LINE L1 4552 4677 -1469 2173 78 54 0 chr1 23824261 23824556 -258369108 + AluY SINE Alu 1 311 0 342 284 54 50 chr1 23824556 23824706 -258368958 + L1M4 LINE L1 4677 4830 -1316 1849 130 11 3 chr1 23824751 23825035 -258368629 + AluJo SINE Alu 7 292 -20 1664 153 33 4 chr1 23825074 23825348 -258368316 + AluJo SINE Alu 1 282 -30 243 0 0 0 chr1 23825349 23825376 -258368288 + (CAAT)n Simple_repeat Simple_repeat 3 29 0 2795 162 58 7 chr1 23825453 23825649 -258368015 - ERVL LTR ERVL -40 5724 5539 1949 134 3 7 chr1 23825649 23825956 -258367708 - AluJb SINE Alu -6 306 1 2795 162 58 7 chr1 23825956 23826307 -258367357 - ERVL LTR ERVL -225 5539 5149 2005 131 23 148 chr1 23826309 23826351 -258367313 - MER47B DNA MER2_type -1907 416 370 1662 151 95 7 chr1 23826351 23826637 -258367027 - AluJb SINE Alu -3 309 1 2005 131 23 148 chr1 23826637 23827068 -258366596 - MER47B DNA MER2_type -1953 370 2 1829 185 15 51 chr1 23827068 23827397 -258366267 - ERVL LTR ERVL -616 5148 4834 2288 105 0 0 chr1 23827397 23827692 -258365972 + AluSc SINE Alu 1 295 -14 1829 185 15 51 chr1 23827692 23827751 -258365913 - ERVL LTR ERVL -930 4834 4774 725 58 0 0 chr1 23827755 23827842 -258365822 - AluY SINE Alu -222 88 2 1540 118 14 0 chr1 23827901 23828113 -258365551 + AluSg/x SINE Alu 85 299 -13 1477 163 12 0 chr1 23828113 23828353 -258365311 - ERVL LTR ERVL -2436 3328 3086 216 0 0 0 chr1 23828375 23828399 -258365265 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 1844 171 26 80 chr1 23828402 23828572 -258365092 - ERVL LTR ERVL -2663 3101 2924 1767 104 0 32 chr1 23828572 23828823 -258364841 + AluSx SINE Alu 64 306 -6 1844 171 26 80 chr1 23828823 23829067 -258364597 - ERVL LTR ERVL -2840 2924 2709 516 185 0 0 chr1 23829067 23829148 -258364516 + AluJ/FLAM SINE Alu 1 81 -231 2194 106 3 11 chr1 23829219 23829502 -258364162 + AluSx SINE Alu 1 281 -31 * 2357 90 3 10 chr1 23829501 23829801 -258363863 - AluY SINE Alu -13 298 1 5377 177 38 0 chr1 23829831 23830807 -258362857 - ERVL LTR ERVL -3072 2692 1680 731 144 0 68 chr1 23830811 23830957 -258362707 + AluJo SINE Alu 7 142 -170 2290 105 27 0 chr1 23830957 23831253 -258362411 + AluSp SINE Alu 1 304 -9 2199 94 4 0 chr1 23831258 23831534 -258362130 + AluSp SINE Alu 1 277 -36 255 273 45 0 chr1 23831537 23831625 -258362039 - L1MC4 LINE L1 -1337 6705 6614 807 89 0 0 chr1 23831651 23831752 -258361912 - AluY SINE Alu -210 101 1 1841 123 61 23 chr1 23831775 23832085 -258361579 - ERVL LTR ERVL -3065 2699 2378 684 115 58 0 chr1 23832085 23832189 -258361475 + AluJb SINE Alu 192 301 -11 1705 274 34 41 chr1 23832190 23832436 -258361228 - ERVL LTR ERVL -4076 1688 1442 2440 92 0 16 chr1 23832436 23832751 -258360913 - AluSx SINE Alu -2 310 1 1705 274 34 41 chr1 23832751 23833013 -258360651 - ERVL LTR ERVL -4322 1442 1180 225 0 0 0 chr1 23833013 23833038 -258360626 + (CCAA)n Simple_repeat Simple_repeat 1 25 0 2271 116 3 0 chr1 23833048 23833350 -258360314 - AluSq SINE Alu -10 303 1 1705 274 34 41 chr1 23833350 23833416 -258360248 - ERVL LTR ERVL -4593 1171 1106 1085 196 27 9 chr1 23833423 23833643 -258360021 - MER58B DNA MER1_type -4 337 114 2260 113 3 3 chr1 23833643 23833944 -258359720 + AluSx SINE Alu 1 301 -11 1734 175 7 0 chr1 23833988 23834293 -258359371 - AluJb SINE Alu 0 307 1 1373 120 27 68 chr1 23834293 23834330 -258359334 - L1MA8 LINE L1 -21 6270 6233 2318 84 3 23 chr1 23834330 23834660 -258359004 - AluSq SINE Alu 0 313 1 1373 120 27 68 chr1 23834660 23834914 -258358750 - L1MA8 LINE L1 -58 6233 5991 312 220 37 101 chr1 23834924 23834951 -258358713 - L1MCc LINE L1 -4480 2642 2615 1243 181 148 22 chr1 23834951 23835221 -258358443 - AluJo SINE Alu -8 304 1 312 220 37 101 chr1 23835221 23835276 -258358388 - L1MCc LINE L1 -4507 2615 2566 1745 115 142 0 chr1 23835276 23835537 -258358127 - AluSx SINE Alu -14 298 1 312 220 37 101 chr1 23835537 23835562 -258358102 - L1MCc LINE L1 -4556 2566 2541 1838 160 0 39 chr1 23835562 23835706 -258357958 + AluJb SINE Alu 1 128 -184 2303 108 0 0 chr1 23835706 23836002 -258357662 + AluSx SINE Alu 1 296 -16 1838 160 0 39 chr1 23836002 23836164 -258357500 + AluJb SINE Alu 128 295 -17 180 0 0 0 chr1 23836164 23836184 -258357480 + (TA)n Simple_repeat Simple_repeat 2 21 0 1046 179 0 0 chr1 23836188 23836356 -258357308 + FRAM SINE Alu 6 173 -3 651 201 40 121 chr1 23836365 23836663 -258357001 - L1MD2 LINE L1 0 6359 6086 * 1218 228 53 96 chr1 23836661 23836837 -258356827 - L1MCc LINE L1 -4765 2176 1994 1950 184 19 101 chr1 23836837 23837148 -258356516 + MLT2B1 LTR ERVL 1 247 -273 2221 93 35 0 chr1 23837148 23837438 -258356226 + AluSp SINE Alu 1 300 -13 1950 184 19 101 chr1 23837438 23837692 -258355972 + MLT2B1 LTR ERVL 247 520 0 1218 228 53 96 chr1 23837692 23837744 -258355920 - L1MCc LINE L1 -4947 1994 1941 1694 181 10 3 chr1 23837744 23838042 -258355622 - AluJb SINE Alu -11 301 2 1218 228 53 96 chr1 23838042 23838329 -258355335 - L1MCc LINE L1 -5000 1941 1707 2395 94 3 3 chr1 23838329 23838637 -258355027 - AluSg SINE Alu -2 308 1 1218 228 53 96 chr1 23838637 23838956 -258354708 - L1MCc LINE L1 -5234 1707 1376 910 222 0 0 chr1 23838961 23839149 -258354515 - AluJb SINE Alu 0 309 122 1135 256 93 72 chr1 23839154 23839811 -258353853 - L1MCc LINE L1 -5060 1363 693 391 250 48 0 chr1 23840389 23840473 -258353191 - L2 LINE L2 0 3313 3226 735 169 54 0 chr1 23840502 23840632 -258353032 + AluJo SINE Alu 2 138 -174 2388 82 0 7 chr1 23840717 23841010 -258352654 + AluSc SINE Alu 1 291 -18 1612 207 3 13 chr1 23841018 23841322 -258352342 + AluJb SINE Alu 2 302 -10 2404 97 0 3 chr1 23841331 23841641 -258352023 + AluSg1 SINE Alu 1 309 0 625 273 132 16 chr1 23841660 23842037 -258351627 - L2 LINE L2 -238 3034 2623 1918 108 12 89 chr1 23842094 23842446 -258351218 - AluSq SINE Alu 0 313 1 2097 125 14 0 chr1 23842452 23842764 -258350900 - AluSx SINE Alu 0 316 1 1712 143 73 4 chr1 23842774 23843047 -258350617 - AluJb SINE Alu -20 292 1 318 255 110 48 chr1 23843346 23843491 -258350173 + MIR3 SINE MIR 8 146 -62 526 323 42 12 chr1 23843517 23843615 -258350049 + MIR SINE MIR 11 105 -157 2110 138 7 3 chr1 23843615 23843920 -258349744 - AluJb SINE Alu -6 306 1 526 323 42 12 chr1 23843920 23844063 -258349601 + MIR SINE MIR 105 259 -3 277 338 9 11 chr1 23844113 23844214 -258349450 + MIR SINE MIR 42 148 -60 2694 93 41 5 chr1 23844217 23844245 -258349419 + L1PB1 LINE L1 5749 5775 -376 464 0 18 0 chr1 23844245 23844301 -258349363 + (CA)n Simple_repeat Simple_repeat 2 58 0 2694 93 41 5 chr1 23844301 23844660 -258349004 + L1PB1 LINE L1 5775 6150 -1 2424 95 0 0 chr1 23844688 23844994 -258348670 + AluSc SINE Alu 1 306 -3 216 143 0 82 chr1 23844996 23845045 -258348619 + MIR3 SINE MIR 148 192 -16 183 200 44 0 chr1 23845103 23845148 -258348516 - L2 LINE L2 -3 3310 3264 544 311 131 10 chr1 23845869 23846075 -258347589 - MIR SINE MIR -21 241 11 640 208 98 122 chr1 23846293 23846353 -258347311 - MIR SINE MIR -14 248 188 2586 77 0 0 chr1 23846353 23846664 -258347000 + AluY SINE Alu 1 311 0 640 208 98 122 chr1 23846664 23846726 -258346938 - MIR SINE MIR -74 188 126 2705 36 0 7 chr1 23846726 23847034 -258346630 + AluY SINE Alu 1 306 -5 640 208 98 122 chr1 23847034 23847046 -258346618 - MIR SINE MIR -136 126 115 2243 139 0 3 chr1 23847046 23847355 -258346309 + AluJb SINE Alu 1 308 -4 640 208 98 122 chr1 23847355 23847463 -258346201 - MIR SINE MIR -147 115 10 366 258 54 0 chr1 23847476 23847643 -258346021 + (TTAGGG)n Simple_repeat Simple_repeat 2 177 0 1494 113 288 22 chr1 23847713 23848032 -258345632 - MER4A LTR ERV1 0 664 261 571 152 0 10 chr1 23848032 23848131 -258345533 - MER4A LTR ERV1 -566 98 1 204 97 0 0 chr1 23848154 23848185 -258345479 + (TTCC)n Simple_repeat Simple_repeat 1 31 0 305 107 89 0 chr1 23848205 23848261 -258345403 - Alu SINE Alu -1 299 239 251 313 207 9 chr1 23848270 23848448 -258345216 - MIR SINE MIR -12 250 34 399 339 71 6 chr1 23848714 23848882 -258344782 - L2 LINE L2 -3 3269 3091 227 210 0 81 chr1 23849100 23849162 -258344502 - MIR SINE MIR -3 259 203 2264 105 3 10 chr1 23849296 23849601 -258344063 - AluSx SINE Alu -9 303 1 207 310 41 81 chr1 23849601 23849798 -258343866 - L2 LINE L2 -249 3023 2835 386 225 12 0 chr1 23850632 23850712 -258342952 + MIR SINE MIR 182 262 0 1739 164 52 17 chr1 23850812 23851099 -258342565 - AluJb SINE Alu -15 297 1 237 154 246 15 chr1 23851110 23851175 -258342489 - MIR SINE MIR -122 140 61 2660 122 51 89 chr1 23851175 23851243 -258342421 + L1M3 LINE L1 5272 5341 -842 2312 101 10 7 chr1 23851243 23851551 -258342113 + AluSq SINE Alu 1 309 -4 2660 122 51 89 chr1 23851551 23851670 -258341994 + L1M3 LINE L1 5341 5463 -720 2257 87 31 0 chr1 23851670 23851958 -258341706 - AluSp SINE Alu -16 297 1 2660 122 51 89 chr1 23851958 23851993 -258341671 + L1M3 LINE L1 5463 5498 -685 2386 99 0 0 chr1 23851993 23852296 -258341368 + AluSq SINE Alu 11 313 0 2660 122 51 89 chr1 23852296 23852644 -258341020 + L1M3 LINE L1 5498 5822 -361 212 0 0 35 chr1 23852654 23852683 -258340981 + (TTTTTA)n Simple_repeat Simple_repeat 2 29 0 1323 126 0 0 chr1 23852683 23852891 -258340773 + AluSq SINE Alu 122 313 0 809 210 14 0 chr1 23852891 23853034 -258340630 - FRAM SINE Alu -30 146 2 1445 170 79 25 chr1 23853041 23853318 -258340346 - AluJo SINE Alu -12 300 9 2177 130 0 3 chr1 23853340 23853647 -258340017 - AluJb SINE Alu -4 308 3 200 337 129 45 chr1 23854115 23854293 -258339371 - MIR SINE MIR -15 247 55 1011 214 0 0 chr1 23854513 23854686 -258338978 - FRAM SINE Alu -6 170 1 198 118 0 0 chr1 23854686 23854720 -258338944 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1717 185 0 7 chr1 23854720 23855006 -258338658 - AluJo SINE Alu -28 284 1 345 257 0 0 chr1 23855019 23855128 -258338536 + CT-rich Low_complexity Low_complexity 4 112 0 2305 90 0 23 chr1 23855129 23855428 -258338236 - AluSc SINE Alu -17 292 1 207 0 0 0 chr1 23855678 23855701 -258337963 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 2432 93 3 3 chr1 23856262 23856574 -258337090 + AluSp SINE Alu 1 312 -1 680 278 32 87 chr1 23856607 23856691 -258336973 - MIR SINE MIR -3 259 172 2138 119 3 0 chr1 23856691 23856976 -258336688 - AluSg SINE Alu -24 286 1 680 278 32 87 chr1 23856976 23857143 -258336521 - MIR SINE MIR -90 172 22 441 276 97 62 chr1 23857178 23857435 -258336229 - L2 LINE L2 -177 3095 2830 210 300 140 10 chr1 23857575 23857675 -258335989 + MIR SINE MIR 27 139 -123 1782 139 42 17 chr1 23857675 23857963 -258335701 + AluJb SINE Alu 1 295 -17 2055 122 10 7 chr1 23857965 23858259 -258335405 + AluSx SINE Alu 1 295 -17 529 48 123 0 chr1 23858261 23858665 -258334999 + (TA)n Simple_repeat Simple_repeat 1 453 0 263 15 92 15 chr1 23858680 23858726 -258334938 + (TA)n Simple_repeat Simple_repeat 2 56 -15 201 39 0 0 chr1 23858726 23858752 -258334912 + (TTAA)n Simple_repeat Simple_repeat 2 27 0 263 15 92 15 chr1 23858752 23858770 -258334894 + (TA)n Simple_repeat Simple_repeat 56 71 0 2359 79 6 32 chr1 23859251 23859567 -258334097 + AluY SINE Alu 1 308 -3 2380 83 3 0 chr1 23859828 23860130 -258333534 + AluSp SINE Alu 1 303 -10 384 228 106 24 chr1 23860136 23860259 -258333405 + MIR3 SINE MIR 3 135 -73 342 252 174 0 chr1 23860276 23860391 -258333273 + MIR SINE MIR 101 235 -27 2222 86 31 7 chr1 23860424 23860715 -258332949 - AluSx SINE Alu -14 298 1 192 309 15 0 chr1 23861037 23861105 -258332559 + MIR SINE MIR 53 121 -141 366 42 0 0 chr1 23861919 23861967 -258331697 + (CGG)n Simple_repeat Simple_repeat 1 48 0 320 239 45 8 chr1 23861977 23862111 -258331553 + C-rich Low_complexity Low_complexity 4 142 0 183 80 0 0 chr1 23862210 23862235 -258331429 + (CGG)n Simple_repeat Simple_repeat 3 27 0 423 56 0 0 chr1 23862250 23862304 -258331360 + (CGG)n Simple_repeat Simple_repeat 1 54 0 1987 116 17 23 chr1 23864825 23865127 -258328537 - AluSx SINE Alu -12 300 1 1431 133 0 0 chr1 23865133 23865329 -258328335 + AluSg/x SINE Alu 100 295 -17 2377 98 3 3 chr1 23865365 23865672 -258327992 - AluSc SINE Alu -2 307 1 2176 62 8 0 chr1 23865704 23865986 -258327678 + AluY SINE Alu 22 305 0 275 310 167 43 chr1 23866043 23866301 -258327363 - L2 LINE L2 0 3272 2983 2302 81 3 0 chr1 23868080 23868396 -258325268 - AluSx SINE Alu 0 317 1 6605 129 60 12 chr1 23868397 23868986 -258324678 - MER41-int LTR ERV1 -2603 3343 2784 2334 92 7 0 chr1 23868986 23869292 -258324372 - AluY SINE Alu -3 308 1 6605 129 60 12 chr1 23869292 23869331 -258324333 - MER41-int LTR ERV1 -3162 2784 2748 2252 125 0 19 chr1 23869331 23869644 -258324020 - AluSx SINE Alu -5 307 1 6605 129 60 12 chr1 23869644 23870154 -258323510 - MER41-int LTR ERV1 -3198 2748 2149 2214 114 0 10 chr1 23870155 23870462 -258323202 + AluSg SINE Alu 1 304 -6 273 97 129 0 chr1 23870609 23870671 -258322993 - L1M4 LINE L1 -697 5487 5418 1988 143 8 45 chr1 23870724 23870831 -258322833 - L1M4 LINE L1 -743 5403 5294 2023 127 53 0 chr1 23870831 23871115 -258322549 - AluJb SINE Alu -13 299 1 1988 143 8 45 chr1 23871115 23871460 -258322204 - L1M4 LINE L1 -852 5294 4985 880 218 0 29 chr1 23871460 23871634 -258322030 - AluJb SINE Alu -19 293 125 2205 196 50 76 chr1 23871634 23871901 -258321763 - L1M4 LINE L1 -1171 4975 4703 2305 99 0 0 chr1 23871901 23872203 -258321461 + AluSc SINE Alu 1 302 -7 2205 196 50 76 chr1 23872203 23872421 -258321243 - L1M4 LINE L1 -1443 4703 4509 1560 174 18 18 chr1 23872421 23872703 -258320961 + AluJb SINE Alu 1 282 -30 2205 196 50 76 chr1 23872703 23872890 -258320774 - L1M4 LINE L1 -1637 4509 4319 2096 143 7 0 chr1 23872890 23873198 -258320466 + AluSp SINE Alu 1 310 -3 189 0 0 0 chr1 23873198 23873219 -258320445 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 310 137 20 0 chr1 24074686 24074737 -258118927 - Alu SINE Alu -250 52 1 730 86 0 31 chr1 24074738 24074866 -258118798 - Tigger4(Zombi) DNA MER2_type -2019 712 589 1262 92 0 71 chr1 24074866 24075062 -258118602 - AluSq SINE Alu -3 310 129 2427 97 0 3 chr1 24075070 24075381 -258118283 - AluSx SINE Alu -2 310 1 810 126 30 0 chr1 24075381 24075516 -258118148 - Tigger4(Zombi) DNA MER2_type -2134 597 459 2235 66 7 4 chr1 24075516 24075789 -258117875 - AluSx SINE Alu -4 308 35 197 282 118 12 chr1 24075942 24076027 -258117637 + L2 LINE L2 3141 3234 -38 244 206 16 32 chr1 24076295 24076358 -258117306 - MER5A DNA MER1_type 0 189 128 1751 157 65 7 chr1 24076389 24076715 -258116949 - AluJo SINE Alu 0 343 1 199 202 45 0 chr1 24076715 24076783 -258116881 - MER5A DNA MER1_type -114 75 4 1540 116 0 5 chr1 24077307 24077522 -258116142 - AluSg/x SINE Alu -11 301 88 186 150 0 50 chr1 24077535 24077575 -258116089 - MER5A DNA MER1_type -109 80 43 495 136 34 0 chr1 24077683 24077771 -258115893 + Alu SINE Alu 208 298 -13 304 293 10 20 chr1 24077792 24077891 -258115773 - MIR SINE MIR -131 131 34 231 346 120 0 chr1 24078559 24078692 -258114972 + MIR SINE MIR 112 260 -2 276 283 88 44 chr1 24078774 24078887 -258114777 - MIR3 SINE MIR -37 171 54 2024 101 8 4 chr1 24078922 24079190 -258114474 - AluSx SINE Alu 0 312 44 1259 92 0 6 chr1 24079290 24079453 -258114211 - AluSq SINE Alu -151 162 1 2360 201 53 76 chr1 24079457 24080142 -258113522 - L1MEc LINE L1 -5721 675 7 2461 78 3 0 chr1 24080165 24080461 -258113203 + AluSp SINE Alu 1 297 -16 2058 169 3 3 chr1 24080464 24080818 -258112846 - MLT1A1 LTR MaLR 0 365 12 3182 193 26 81 chr1 24081270 24081370 -258112294 - L1MD2 LINE L1 -10 6349 6245 2278 116 0 0 chr1 24081370 24081663 -258112001 - AluSx SINE Alu -9 303 11 3182 193 26 81 chr1 24081663 24082255 -258111409 - L1MD2 LINE L1 -114 6245 5622 2436 64 3 0 chr1 24082255 24082552 -258111112 + AluY SINE Alu 1 298 -13 3182 193 26 81 chr1 24082552 24082668 -258110996 - L1MD2 LINE L1 -737 5622 5501 2163 117 0 3 chr1 24082668 24082959 -258110705 + AluSg SINE Alu 1 290 -20 3182 193 26 81 chr1 24082959 24083000 -258110664 - L1MD2 LINE L1 -858 5501 5543 651 64 27 0 chr1 24083000 24083110 -258110554 + (TA)n Simple_repeat Simple_repeat 1 113 0 1647 119 8 25 chr1 24083201 24083444 -258110220 + AluSq SINE Alu 1 239 -74 256 298 184 7 chr1 24083926 24084067 -258109597 + MIR SINE MIR 20 185 -77 202 369 137 6 chr1 24084304 24084472 -258109192 - MIR SINE MIR -14 248 59 * 225 285 135 36 chr1 24084441 24084527 -258109137 - L2 LINE L2 -453 2861 2785 738 182 0 8 chr1 24084527 24084659 -258109005 - FLAM_C SINE Alu -1 132 2 225 285 135 36 chr1 24084659 24084765 -258108899 - L2 LINE L2 -529 2785 2650 591 250 12 48 chr1 24084944 24085112 -258108552 + MIR SINE MIR 86 247 -15 298 294 59 29 chr1 24085576 24085678 -258107986 + L2 LINE L2 3208 3312 -1 225 65 0 0 chr1 24085741 24085772 -258107892 + (CAGA)n Simple_repeat Simple_repeat 1 31 0 422 294 27 14 chr1 24085776 24085922 -258107742 + MIR SINE MIR 82 229 -33 477 346 80 5 chr1 24086027 24086215 -258107449 + MIR SINE MIR 28 229 -33 499 293 28 11 chr1 24086283 24086464 -258107200 + MIR3 SINE MIR 10 193 -15 2603 60 0 0 chr1 24086945 24087247 -258106417 - AluY SINE Alu -9 302 1 225 0 0 0 chr1 24087407 24087432 -258106232 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 329 237 41 41 chr1 24087434 24087531 -258106133 - L2 LINE L2 -10 3303 3207 408 131 0 38 chr1 24087538 24087617 -258106047 + MSTB LTR MaLR 355 424 -2 826 144 8 0 chr1 24087619 24087751 -258105913 + FLAM_C SINE Alu 1 133 0 2227 103 0 56 chr1 24088083 24088404 -258105260 - AluSx SINE Alu -9 303 1 315 231 77 46 chr1 24088405 24088535 -258105129 + MIR SINE MIR 72 205 -57 2588 70 0 3 chr1 24088841 24089153 -258104511 - AluY SINE Alu 0 311 1 2030 129 14 0 chr1 24089158 24089445 -258104219 - AluSg SINE Alu -19 291 1 405 262 99 35 chr1 24089696 24089755 -258103909 + MIR SINE MIR 20 74 -188 1968 148 37 7 chr1 24089755 24090053 -258103611 + AluJb SINE Alu 1 307 -5 2142 139 3 0 chr1 24090054 24090355 -258103309 + AluSx SINE Alu 1 302 -10 2208 122 0 16 chr1 24090364 24090668 -258102996 + AluSx SINE Alu 1 299 -13 405 262 99 35 chr1 24090668 24090768 -258102896 + MIR SINE MIR 81 202 -60 262 132 226 0 chr1 24090946 24090999 -258102665 - L1MC4 LINE L1 -25 8017 7953 694 257 0 0 chr1 24091036 24091180 -258102484 - FRAM SINE Alu -37 139 1 1413 156 73 49 chr1 24091201 24091528 -258102136 - LTR47A LTR ERVL 0 452 118 619 96 133 59 chr1 24091499 24091634 -258102030 - LTR47A LTR ERVL -257 195 51 * 696 120 137 0 chr1 24091634 24091751 -258101913 + FLAM_C SINE Alu 1 133 -10 340 164 0 0 chr1 24091751 24091806 -258101858 - LTR47A LTR ERVL -397 55 1 1027 205 121 10 chr1 24091806 24092103 -258101561 - L1MC4 LINE L1 -100 7942 7613 2470 96 3 3 chr1 24092108 24092421 -258101243 - AluSq SINE Alu 0 313 1 234 0 0 0 chr1 24093065 24093091 -258100573 + (A)n Simple_repeat Simple_repeat 1 26 0 2354 56 45 0 chr1 24093093 24093380 -258100284 + AluY SINE Alu 3 302 -9 1166 171 8 16 chr1 24093385 24093636 -258100028 + L1MEc LINE L1 674 922 -5474 249 139 0 0 chr1 24093661 24093704 -258099960 + (A)n Simple_repeat Simple_repeat 1 43 0 719 172 0 0 chr1 24093813 24093929 -258099735 - FLAM_C SINE Alu -26 117 2 1046 280 21 8 chr1 24093932 24094307 -258099357 + L1MEc LINE L1 997 1376 -5020 2434 97 0 0 chr1 24094543 24094842 -258098822 + AluSx SINE Alu 1 299 -13 1274 152 9 31 chr1 24094842 24095066 -258098598 + AluJo SINE Alu 85 303 -9 663 250 105 14 chr1 24095773 24096017 -258097647 - MIR SINE MIR -1 261 1 2179 121 0 0 chr1 24096413 24096723 -258096941 + AluSx SINE Alu 1 310 0 2440 88 0 0 chr1 24096939 24097233 -258096431 + AluSq SINE Alu 1 294 -19 529 229 62 109 chr1 24097291 24097416 -258096248 + MIR SINE MIR 57 170 -92 504 179 145 8 chr1 24097416 24097533 -258096131 - FLAM_A SINE Alu 0 133 1 529 229 62 109 chr1 24097533 24097617 -258096047 + MIR SINE MIR 170 256 -6 292 230 259 0 chr1 24097741 24097876 -258095788 + L1MC4a LINE L1 5771 5940 -1868 2253 95 0 3 chr1 24097885 24098168 -258095496 + AluSx SINE Alu 12 293 -19 369 275 129 6 chr1 24098759 24098930 -258094734 + L2 LINE L2 3075 3266 -6 282 367 18 9 chr1 24099065 24099174 -258094490 + MIR SINE MIR 12 121 -141 224 366 91 23 chr1 24099158 24099333 -258094331 + L2 LINE L2 2915 3101 -171 * 399 264 109 0 chr1 24099421 24099531 -258094133 - L2 LINE L2 -1 3312 3191 1495 98 94 18 chr1 24099683 24099810 -258093854 - AluSx SINE Alu -63 249 133 225 0 0 0 chr1 24099810 24099835 -258093829 + (TTA)n Simple_repeat Simple_repeat 2 26 0 1495 98 94 18 chr1 24099835 24099931 -258093733 - AluSx SINE Alu -179 133 9 1674 66 24 5 chr1 24100085 24100298 -258093366 - AluY SINE Alu -8 303 87 2523 92 19 5 chr1 24100408 24100778 -258092886 - THE1C LTR MaLR 0 375 1 242 114 0 0 chr1 24100968 24101003 -258092661 + U2 snRNA snRNA 1 35 -153 359 293 203 16 chr1 24102026 24102272 -258091392 + L2 LINE L2 3008 3299 -14 718 174 0 54 chr1 24102361 24102510 -258091154 - FLAM_C SINE Alu 0 143 3 1500 173 96 7 chr1 24102646 24102796 -258090868 - AluJb SINE Alu -17 295 160 821 19 0 19 chr1 24102796 24102900 -258090764 + (TTTC)n Simple_repeat Simple_repeat 3 104 0 1500 173 96 7 chr1 24102900 24103020 -258090644 - AluJb SINE Alu -152 160 1 281 223 262 0 chr1 24103063 24103166 -258090498 + MIR SINE MIR 85 214 -48 561 190 190 22 chr1 24103909 24104088 -258089576 + MER3 DNA MER1_type 1 209 0 2382 99 20 11 chr1 24104804 24105157 -258088507 + THE1C LTR MaLR 3 358 -17 2315 97 7 0 chr1 24105252 24105541 -258088123 - AluSg SINE Alu -19 291 1 22 0 0 0 chr1 24105643 24105665 -258087999 + AT_rich Low_complexity Low_complexity 1 22 0 1723 186 0 30 chr1 24105665 24105961 -258087703 - AluJb SINE Alu -24 288 2 654 142 30 0 chr1 24106017 24106047 -258087617 + CT-rich Low_complexity Low_complexity 1 29 -109 2554 63 0 19 chr1 24106047 24106363 -258087301 - AluY SINE Alu -1 310 1 654 142 30 0 chr1 24106363 24106466 -258087198 + CT-rich Low_complexity Low_complexity 29 138 0 2091 144 0 16 chr1 24106466 24106779 -258086885 - AluSx SINE Alu -4 308 1 391 294 0 0 chr1 24106889 24106991 -258086673 - MIR SINE MIR 0 262 161 1069 142 5 63 chr1 24106995 24107183 -258086481 - AluSg/x SINE Alu 0 310 133 1427 166 46 89 chr1 24107183 24107392 -258086272 - AluJb SINE Alu -1 311 119 423 0 0 0 chr1 24107392 24107439 -258086225 + (TG)n Simple_repeat Simple_repeat 2 48 0 1427 166 46 89 chr1 24107439 24107554 -258086110 - AluJb SINE Alu -193 119 1 1069 142 5 63 chr1 24107554 24107570 -258086094 - AluSg/x SINE Alu -177 133 118 504 274 89 0 chr1 24107613 24107748 -258085916 - MIR SINE MIR -110 152 6 206 265 29 15 chr1 24107965 24108033 -258085631 - MIR SINE MIR -102 106 38 1398 173 113 13 chr1 24108083 24108383 -258085281 + Charlie1b DNA MER1_type 2 331 -192 2175 95 43 13 chr1 24108386 24108521 -258085143 + AluSp SINE Alu 1 131 -182 2468 54 6 50 chr1 24108521 24108838 -258084826 + AluY SINE Alu 1 303 -8 2175 95 43 13 chr1 24108838 24109006 -258084658 + AluSp SINE Alu 131 313 0 401 304 108 13 chr1 24109361 24109519 -258084145 + MIR SINE MIR 20 192 -70 217 303 0 57 chr1 24109954 24110076 -258083588 + C-rich Low_complexity Low_complexity 6 120 0 221 309 0 0 chr1 24110123 24110178 -258083486 + MIR SINE MIR 91 145 -117 2381 106 3 0 chr1 24110179 24110482 -258083182 + AluSx SINE Alu 1 304 -8 395 241 26 52 chr1 24110486 24110602 -258083062 - MER3 DNA MER1_type -85 124 12 789 127 8 15 chr1 24110612 24110746 -258082918 - FLAM_A SINE Alu 0 133 1 410 283 49 44 chr1 24110811 24110993 -258082671 + MIR3 SINE MIR 23 205 -3 180 0 0 0 chr1 24111605 24111625 -258082039 + (CA)n Simple_repeat Simple_repeat 2 21 0 596 304 34 10 chr1 24111684 24111891 -258081773 - MIR SINE MIR -5 257 46 2231 91 10 10 chr1 24112314 24112611 -258081053 + AluSx SINE Alu 1 297 -15 1281 133 121 64 chr1 24112647 24112779 -258080885 + AluJo SINE Alu 11 134 -178 2187 117 24 0 chr1 24112779 24113070 -258080594 + AluSp SINE Alu 1 298 -15 1615 104 135 56 chr1 24113072 24113210 -258080454 + AluSx SINE Alu 1 127 -185 2205 108 0 0 chr1 24113210 24113498 -258080166 + AluY SINE Alu 1 288 -23 1615 104 135 56 chr1 24113498 24113647 -258080017 + AluSx SINE Alu 127 311 -1 1281 133 121 64 chr1 24113647 24113760 -258079904 + AluJo SINE Alu 134 273 -39 511 269 39 85 chr1 24113782 24113891 -258079773 + L1ME LINE L1 5414 5526 -595 2570 62 0 3 chr1 24113891 24114195 -258079469 + AluY SINE Alu 2 304 -7 511 269 39 85 chr1 24114195 24114345 -258079319 + L1ME LINE L1 5526 5661 -460 2346 115 0 0 chr1 24114530 24114843 -258078821 - AluSq SINE Alu 0 313 1 27 29 0 0 chr1 24114851 24114885 -258078779 + AT_rich Low_complexity Low_complexity 1 34 0 466 275 51 0 chr1 24115286 24115424 -258078240 - MIR SINE MIR -111 151 7 488 306 12 12 chr1 24115676 24115836 -258077828 - MIR SINE MIR -72 190 31 240 94 57 38 chr1 24115931 24115984 -258077680 - MIR SINE MIR -101 161 108 639 291 33 14 chr1 24116015 24116225 -258077439 + MIR SINE MIR 49 262 0 222 306 107 16 chr1 24116704 24116825 -258076839 - MIR SINE MIR -119 143 12 251 307 13 0 chr1 24116903 24116978 -258076686 + L2 LINE L2 3238 3313 0 216 331 97 62 chr1 24117227 24117517 -258076147 - L2 LINE L2 -55 3217 2918 1584 183 15 80 chr1 24117626 24118026 -258075638 - MLT1A2 LTR MaLR 0 374 1 722 181 70 47 chr1 24118321 24118492 -258075172 + MER45A DNA AcHobo 1 175 -3 346 255 21 71 chr1 24118779 24118920 -258074744 + MER94 DNA DNA 1 134 0 2378 105 0 3 chr1 24119012 24119325 -258074339 - AluSx SINE Alu 0 312 1 2098 130 14 0 chr1 24119325 24119617 -258074047 - AluSx SINE Alu -14 298 3 481 183 58 10 chr1 24119717 24119821 -258073843 + MLT1C LTR MaLR 359 467 0 667 265 48 0 chr1 24119868 24120057 -258073607 + L1ME3A LINE L1 5973 6170 0 2209 127 3 10 chr1 24120070 24120384 -258073280 + AluSx SINE Alu 1 312 0 1132 161 60 14 chr1 24120467 24120685 -258072979 - MLT1A2 LTR MaLR -2 372 145 232 211 77 0 chr1 24120771 24120823 -258072841 - MIR SINE MIR -93 169 114 204 89 22 111 chr1 24121563 24121608 -258072056 + MER91B DNA MER1_type 24 64 -126 287 282 19 48 chr1 24122198 24122301 -258071363 - L2 LINE L2 -217 3055 2956 363 296 59 32 chr1 24122544 24122730 -258070934 + MIR SINE MIR 35 225 -37 292 309 7 47 chr1 24123242 24123391 -258070273 + MIR SINE MIR 50 192 -70 2326 94 17 0 chr1 24123592 24123891 -258069773 + AluSg SINE Alu 1 304 -6 2340 68 4 0 chr1 24123891 24124170 -258069494 + AluY SINE Alu 1 281 -30 192 40 0 0 chr1 24124171 24124196 -258069468 + (TA)n Simple_repeat Simple_repeat 2 26 0 368 115 33 0 chr1 24124200 24124261 -258069403 + MIR SINE MIR 73 135 -127 382 247 0 0 chr1 24124542 24124639 -258069025 - L1MB8 LINE L1 -2 6176 6080 281 303 0 0 chr1 24124845 24124911 -258068753 + L2 LINE L2 3241 3306 -7 2297 99 3 7 chr1 24124911 24125214 -258068450 + AluSx SINE Alu 1 302 -10 216 67 0 0 chr1 24125402 24125432 -258068232 + (T)n Simple_repeat Simple_repeat 1 30 0 724 207 35 0 chr1 24125729 24125874 -258067790 + MIR SINE MIR 107 256 -6 445 280 140 33 chr1 24126276 24126741 -258066923 + L2 LINE L2 2740 3252 -61 1146 139 41 0 chr1 24126974 24127146 -258066518 - AluSg/x SINE Alu 0 310 132 2507 73 0 0 chr1 24127146 24127449 -258066215 - AluY SINE Alu -8 303 1 24 0 0 0 chr1 24127450 24127474 -258066190 + AT_rich Low_complexity Low_complexity 1 24 0 218 310 17 78 chr1 24127565 24127681 -258065983 - MIR SINE MIR -65 197 89 252 237 40 13 chr1 24127757 24127833 -258065831 + L2 LINE L2 3195 3272 0 334 311 43 32 chr1 24128166 24128219 -258065445 - L1ME4a LINE L1 0 6121 6070 897 171 32 69 chr1 24128219 24128325 -258065339 - MER3 DNA MER1_type 0 209 114 2129 137 0 3 chr1 24128325 24128625 -258065039 - AluJb SINE Alu -13 299 1 897 171 32 69 chr1 24128625 24128735 -258064929 - MER3 DNA MER1_type -95 114 1 334 311 43 32 chr1 24128735 24128958 -258064706 - L1ME4a LINE L1 -51 6070 5842 297 211 39 19 chr1 24129139 24129243 -258064421 - HAL1b LINE L1 -1 1347 1242 2388 69 0 0 chr1 24129261 24129537 -258064127 - AluSx SINE Alu -15 297 22 195 184 0 0 chr1 24129560 24129598 -258064066 + CT-rich Low_complexity Low_complexity 1 38 0 1752 185 24 0 chr1 24129600 24129892 -258063772 - AluJo SINE Alu -13 299 1 2044 123 10 29 chr1 24129895 24130204 -258063460 - AluJb SINE Alu -9 303 1 686 297 121 34 chr1 24130296 24130401 -258063263 - L1ME4a LINE L1 -116 6005 5911 2318 114 0 0 chr1 24130401 24130699 -258062965 - AluSx SINE Alu -14 298 1 686 297 121 34 chr1 24130699 24131064 -258062600 - L1ME4a LINE L1 -210 5911 5494 1608 188 7 7 chr1 24131066 24131348 -258062316 - AluJb SINE Alu -30 282 1 468 0 0 0 chr1 24131356 24131408 -258062256 + (TTA)n Simple_repeat Simple_repeat 2 53 0 305 98 0 0 chr1 24131411 24131452 -258062212 - FAM SINE Alu -19 156 116 437 255 155 75 chr1 24131487 24131836 -258061828 - L2 LINE L2 -1 3312 2936 715 263 43 5 chr1 24132084 24132293 -258061371 + MIR SINE MIR 41 257 -5 324 257 160 35 chr1 24132293 24132437 -258061227 + MIR SINE MIR 37 198 -64 640 249 129 5 chr1 24132675 24132876 -258060788 - Charlie8 DNA MER1_type -2191 226 1 246 264 0 69 chr1 24133009 24133096 -258060568 - L1ME4a LINE L1 -701 5469 5389 209 224 69 0 chr1 24133279 24133337 -258060327 + L2 LINE L2 3248 3309 -4 2460 106 0 0 chr1 24133545 24133857 -258059807 - AluSx SINE Alu 0 312 1 372 298 62 36 chr1 24134141 24134366 -258059298 + L2 LINE L2 2854 3084 -188 323 269 77 51 chr1 24134410 24134566 -258059098 - L2 LINE L2 -93 3179 3020 2185 116 0 17 chr1 24134731 24135024 -258058640 - AluSx SINE Alu -18 294 7 2352 82 14 3 chr1 24135041 24135334 -258058330 - AluSq SINE Alu -15 298 3 498 198 0 0 chr1 24135335 24135421 -258058243 - AluJ/FLAM SINE Alu -225 87 2 2661 51 0 16 chr1 24137517 24137831 -258055833 + AluY SINE Alu 1 309 -2 255 227 126 17 chr1 24137834 24137953 -258055711 + L1ME4a LINE L1 5988 6119 -2 269 279 110 15 chr1 24138362 24138498 -258055166 - MIR SINE MIR -2 260 112 1328 134 97 15 chr1 24138557 24138826 -258054838 - L1MB7 LINE L1 -20 6164 5874 372 246 146 8 chr1 24139104 24139234 -258054430 - MIR SINE MIR -111 151 4 544 314 69 16 chr1 24139614 24139859 -258053805 + MIR SINE MIR 2 259 -3 459 265 77 12 chr1 24140486 24140656 -258053008 - MIR SINE MIR -10 252 72 2414 92 3 0 chr1 24141366 24141671 -258051993 - AluSq SINE Alu -7 306 1 2497 79 3 0 chr1 24141686 24141990 -258051674 - AluSq SINE Alu -8 305 1 1830 69 4 4 chr1 24143318 24143549 -258050115 + AluSg/x SINE Alu 73 303 -6 349 352 21 7 chr1 24145034 24145176 -258048488 - MIR SINE MIR -80 182 39 268 140 60 0 chr1 24145306 24145356 -258048308 + L2 LINE L2 3261 3313 0 216 255 0 20 chr1 24146006 24146057 -258047607 + MIR SINE MIR 17 66 -142 1833 133 61 27 chr1 24146265 24146558 -258047106 + AluJo SINE Alu 1 303 -9 392 294 127 22 chr1 24146707 24146944 -258046720 + MIR SINE MIR 2 262 0 397 270 90 0 chr1 24147213 24147324 -258046340 + MIR SINE MIR 49 169 -93 384 312 24 0 chr1 24147507 24147632 -258046032 + MIR SINE MIR 1 128 -134 941 110 0 48 chr1 24147632 24147778 -258045886 - AluSg/x SINE Alu -2 310 172 434 209 40 61 chr1 24147781 24147875 -258045789 + MIR SINE MIR 117 209 -53 2101 111 7 4 chr1 24147875 24148186 -258045478 + AluSx SINE Alu 3 314 0 434 209 40 61 chr1 24148186 24148238 -258045426 + MIR SINE MIR 209 261 -1 2368 104 0 10 chr1 24148324 24148632 -258045032 - AluSq SINE Alu -8 305 1 408 206 157 0 chr1 24148660 24148762 -258044902 - L2 LINE L2 -7 3306 3189 416 281 166 25 chr1 24149390 24149625 -258044039 - L2 LINE L2 -9 3304 3037 2099 132 0 10 chr1 24149856 24150152 -258043512 - AluJb SINE Alu -19 293 1 2190 117 3 7 chr1 24150152 24150451 -258043213 - AluSx SINE Alu -13 299 2 299 297 115 5 chr1 24150544 24150736 -258042928 - L2 LINE L2 -866 2448 2236 683 171 16 16 chr1 24151205 24151334 -258042330 + FLAM_C SINE Alu 1 129 -14 395 309 20 39 chr1 24151407 24151611 -258042053 + L1ME LINE L1 5620 5819 -302 335 155 10 52 chr1 24151640 24151717 -258041947 + Alu SINE Alu 1 55 -253 2221 111 0 0 chr1 24151790 24152079 -258041585 - AluSx SINE Alu -23 289 1 837 215 48 0 chr1 24152163 24152349 -258041315 + MER3 DNA MER1_type 15 209 0 246 170 85 0 chr1 24152310 24152357 -258041307 - MER3 DNA MER1_type -119 90 40 * 315 71 0 0 chr1 24152477 24152519 -258041145 + (T)n Simple_repeat Simple_repeat 1 42 0 432 224 9 52 chr1 24152561 24152677 -258040987 + L2 LINE L2 3189 3299 -14 2101 121 21 0 chr1 24152680 24152969 -258040695 + AluSx SINE Alu 1 295 -17 1915 138 41 7 chr1 24153055 24153346 -258040318 - AluJb SINE Alu -8 304 4 253 253 66 0 chr1 24154192 24154283 -258039381 + MIR SINE MIR 16 112 -96 299 258 11 118 chr1 24154315 24154501 -258039163 + MIR SINE MIR 97 262 0 403 232 222 16 chr1 24154969 24155154 -258038510 + MIR SINE MIR 37 259 -3 1701 147 34 34 chr1 24155301 24155594 -258038070 + AluJo SINE Alu 1 293 -19 2304 156 17 46 chr1 24155692 24155731 -258037933 - MLT1C LTR MaLR 0 467 428 2498 97 0 0 chr1 24155731 24156042 -258037622 + AluY SINE Alu 1 311 0 2304 156 17 46 chr1 24156042 24156301 -258037363 - MLT1C LTR MaLR -39 428 186 2421 87 0 0 chr1 24156301 24156600 -258037064 - AluY SINE Alu -12 299 1 2304 156 17 46 chr1 24156600 24156781 -258036883 - MLT1C LTR MaLR -281 186 1 2400 97 0 0 chr1 24156857 24157155 -258036509 + AluSg SINE Alu 1 298 -12 657 162 9 0 chr1 24157544 24157655 -258036009 + FRAM SINE Alu 1 111 -65 374 289 53 59 chr1 24157801 24157953 -258035711 - MIR SINE MIR -45 217 67 1780 127 24 103 chr1 24157958 24158298 -258035366 + AluYb8 SINE Alu 1 313 -5 2427 99 0 0 chr1 24158336 24158638 -258035026 + AluSx SINE Alu 1 302 -10 358 303 87 53 chr1 24158645 24158909 -258034755 + L2 LINE L2 2702 2974 -340 1385 184 31 23 chr1 24158909 24159165 -258034499 + AluJb SINE Alu 39 296 -16 430 360 20 45 chr1 24159191 24159483 -258034181 + L2 LINE L2 2988 3272 0 939 241 131 32 chr1 24159748 24160232 -258033432 + L2 LINE L2 2772 3313 0 343 275 141 7 chr1 24161204 24161353 -258032311 - MIR SINE MIR -66 196 28 486 279 14 7 chr1 24161491 24161631 -258032033 - MIR3 SINE MIR -65 143 3 390 243 63 0 chr1 24161804 24161915 -258031749 - MLT1C LTR MaLR -291 176 59 2504 67 0 0 chr1 24161988 24162286 -258031378 + AluY SINE Alu 1 298 -13 198 0 0 0 chr1 24162286 24162308 -258031356 + (TA)n Simple_repeat Simple_repeat 2 23 0 2254 111 0 0 chr1 24162320 24162608 -258031056 + AluSx SINE Alu 1 288 -24 975 159 7 0 chr1 24162641 24162792 -258030872 + AluJb SINE Alu 159 310 -2 308 256 117 104 chr1 24163451 24163767 -258029897 - L2 LINE L2 0 3272 2953 245 206 130 54 chr1 24164567 24164659 -258029005 - L2 LINE L2 -37 3235 3137 1103 209 143 59 chr1 24164698 24165273 -258028391 - L2 LINE L2 0 3313 2674 2185 102 0 36 chr1 24165273 24165578 -258028086 + AluSx SINE Alu 1 294 -18 1103 209 143 59 chr1 24165578 24165678 -258027986 - L2 LINE L2 -639 2674 2584 2162 231 150 18 chr1 24165759 24166607 -258027057 - L2 LINE L2 -1119 2195 1236 245 307 129 0 chr1 24166712 24166813 -258026851 - L2 LINE L2 -254 3059 2946 1045 157 0 18 chr1 24167248 24167414 -258026250 + FRAM SINE Alu 1 160 -16 186 250 71 0 chr1 24167593 24167649 -258026015 + MIR SINE MIR 87 146 -62 528 281 65 74 chr1 24167704 24167903 -258025761 + MIR SINE MIR 2 198 -64 2185 102 3 10 chr1 24167903 24168025 -258025639 + AluSq SINE Alu 14 135 -178 2420 90 3 0 chr1 24168025 24168324 -258025340 + AluSx SINE Alu 2 301 -11 2185 102 3 10 chr1 24168324 24168494 -258025170 + AluSq SINE Alu 135 304 -9 528 281 65 74 chr1 24168494 24168558 -258025106 + MIR SINE MIR 198 261 -1 264 275 0 0 chr1 24168652 24168721 -258024943 - L2 LINE L2 -35 3237 3169 27 62 0 0 chr1 24171220 24171268 -258022396 + GC_rich Low_complexity Low_complexity 1 48 0 413 286 76 12 chr1 24171311 24171532 -258022132 + MIR SINE MIR 20 256 -6 423 303 62 0 chr1 24172230 24172392 -258021272 - MIR SINE MIR -65 197 26 1998 139 14 3 chr1 24172920 24173214 -258020450 + AluJb SINE Alu 1 297 -15 238 250 47 0 chr1 24173495 24173559 -258020105 + MIR SINE MIR 81 147 -61 2078 123 10 3 chr1 24174006 24174298 -258019366 + AluSx SINE Alu 1 294 -18 181 83 56 0 chr1 24175025 24175061 -258018603 + (CACCC)n Simple_repeat Simple_repeat 3 40 0 287 156 125 83 chr1 24180734 24180830 -258012834 - MIR3 SINE MIR 0 208 109 295 277 24 0 chr1 24180869 24180952 -258012712 + MIR SINE MIR 108 192 -70 2634 54 0 10 chr1 24181321 24181635 -258012029 + AluY SINE Alu 1 311 0 1188 143 0 6 chr1 24182575 24182750 -258010914 - AluJb SINE Alu -12 300 127 2376 49 49 0 chr1 24182866 24183153 -258010511 - AluY SINE Alu -10 301 1 207 0 0 0 chr1 24183781 24183804 -258009860 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 195 288 91 0 chr1 24184483 24184549 -258009115 + L2 LINE L2 3181 3252 -61 1860 93 0 8 chr1 24184634 24184870 -258008794 + AluSq SINE Alu 1 234 -79 202 29 57 0 chr1 24184870 24184905 -258008759 + (TA)n Simple_repeat Simple_repeat 2 38 0 266 238 286 0 chr1 24185358 24185442 -258008222 - L2 LINE L2 -4 3268 3161 2225 130 0 0 chr1 24186015 24186315 -258007349 - AluSx SINE Alu -12 300 1 522 143 24 0 chr1 24186724 24186808 -258006856 + AluSg/x SINE Alu 216 301 -11 2688 49 0 0 chr1 24186987 24187295 -258006369 + AluY SINE Alu 2 309 -2 778 236 94 11 chr1 24187382 24187573 -258006091 + MIR SINE MIR 2 208 -54 381 246 120 16 chr1 24187588 24187771 -258005893 - L1MC5 LINE L1 -38 7923 7722 2183 114 0 10 chr1 24187771 24188070 -258005594 + AluSx SINE Alu 1 296 -16 216 0 0 0 chr1 24188071 24188095 -258005569 + (CA)n Simple_repeat Simple_repeat 2 25 0 371 289 23 0 chr1 24188095 24188197 -258005467 - L1MC4 LINE L1 -1339 6703 6614 * 378 239 45 23 chr1 24188147 24188235 -258005429 + L1MC4 LINE L1 6614 6703 -1339 2106 91 0 4 chr1 24188249 24188538 -258005126 + AluY SINE Alu 21 308 0 1841 171 0 3 chr1 24188623 24188909 -258004755 + AluJo SINE Alu 1 285 -27 626 211 51 58 chr1 24188921 24189077 -258004587 - FRAM SINE Alu -11 155 1 2309 113 0 0 chr1 24189087 24189389 -258004275 - AluSx SINE Alu -10 302 1 415 167 94 0 chr1 24189477 24189573 -258004091 + MER104 DNA Tc2 74 178 -2 851 236 57 22 chr1 24189629 24189858 -258003806 - MIR SINE MIR -17 245 9 2079 117 0 0 chr1 24190046 24190319 -258003345 - AluSx SINE Alu -13 299 27 2155 102 42 0 chr1 24190323 24190606 -258003058 - AluSg SINE Alu -15 295 1 2256 101 23 7 chr1 24190619 24190926 -258002738 - AluSx SINE Alu 0 312 1 577 232 134 0 chr1 24191690 24191832 -258001832 + MIR3 SINE MIR 45 205 -3 187 139 56 0 chr1 24192119 24192155 -258001509 - L2 LINE L2 -11 3302 3265 242 203 58 72 chr1 24192584 24192653 -258001011 + MIR SINE MIR 81 148 -60 200 208 21 0 chr1 24193052 24193100 -258000564 + (CTCGG)n Simple_repeat Simple_repeat 3 51 0 654 274 45 53 chr1 24193568 24193762 -257999902 + MIR SINE MIR 18 211 -51 2672 43 0 0 chr1 24193762 24194063 -257999601 + AluSc SINE Alu 1 301 -8 654 274 45 53 chr1 24194063 24194113 -257999551 + MIR SINE MIR 211 260 -2 573 254 14 0 chr1 24194116 24194254 -257999410 + MIR3 SINE MIR 55 194 -14 459 293 82 9 chr1 24194262 24194494 -257999170 - MER112 DNA MER1_type -11 249 1 1879 167 7 13 chr1 24194695 24195001 -257998663 + AluJb SINE Alu 1 304 -8 420 231 26 133 chr1 24195269 24195339 -257998325 - MIR SINE MIR -40 222 146 2398 76 21 0 chr1 24195339 24195629 -257998035 + AluSx SINE Alu 1 296 -16 420 231 26 133 chr1 24195629 24195753 -257997911 - MIR SINE MIR -116 146 49 427 242 0 17 chr1 24195838 24195958 -257997706 - MLT1F1 LTR MaLR 0 567 450 225 244 94 103 chr1 24196032 24196120 -257997544 - MLT1F1 LTR MaLR -268 281 194 2543 76 0 0 chr1 24196120 24196424 -257997240 - AluSx SINE Alu -8 304 1 225 244 94 103 chr1 24196424 24196548 -257997116 - MLT1F1 LTR MaLR -355 194 71 347 140 0 0 chr1 24196576 24196633 -257997031 - MLT1F LTR MaLR 0 542 486 1018 233 20 22 chr1 24196633 24196989 -257996675 - LTR2 LTR ERV1 0 449 1 2145 190 114 2 chr1 24196993 24197430 -257996234 - MLT1F LTR MaLR -54 488 3 651 181 191 71 chr1 24197454 24197736 -257995928 - HAL1 LINE L1 -864 1643 1328 727 285 99 2 chr1 24197742 24198059 -257995605 + MER115 DNA AcHobo 340 4031 0 183 222 0 44 chr1 24198060 24198105 -257995559 + MIR SINE MIR 92 134 -128 372 344 23 0 chr1 24198115 24198246 -257995418 + MIR SINE MIR 100 233 -29 3325 146 12 16 chr1 24198290 24198851 -257994813 + Tigger7 DNA MER2_type 21 579 -1908 1089 113 73 25 chr1 24198844 24199048 -257994616 + Tigger7 DNA MER2_type 2272 2485 -2 * 375 266 0 0 chr1 24199047 24199126 -257994538 + Tigger5 DNA MER2_type 1 79 -2244 * 1916 168 0 0 chr1 24199460 24199757 -257993907 - AluJb SINE Alu -15 297 1 225 278 42 0 chr1 24199980 24200052 -257993612 - MLT1E3 LTR MaLR -65 559 485 253 241 19 0 chr1 24200052 24200106 -257993558 - MIR SINE MIR -183 79 25 1952 158 0 3 chr1 24200106 24200403 -257993261 - AluJb SINE Alu -7 305 10 2507 63 0 0 chr1 24200411 24200711 -257992953 - AluY SINE Alu -11 300 1 262 298 64 21 chr1 24200780 24200874 -257992790 + MIR SINE MIR 29 126 -82 552 219 219 44 chr1 24200948 24201026 -257992638 - MIR SINE MIR -8 254 191 1865 117 24 103 chr1 24201026 24201229 -257992435 - AluYb8 SINE Alu -4 314 97 2270 82 36 0 chr1 24201229 24201510 -257992154 - AluY SINE Alu -18 293 3 2293 125 0 0 chr1 24201512 24201816 -257991848 - AluSg SINE Alu -6 304 1 1865 117 24 103 chr1 24201816 24201950 -257991714 - AluYb8 SINE Alu -222 96 1 552 219 219 44 chr1 24201950 24202076 -257991588 - MIR SINE MIR -71 191 14 668 67 0 0 chr1 24202181 24202270 -257991394 - L1PB1 LINE L1 -4 6147 6059 672 217 120 120 chr1 24202278 24202660 -257991004 + MLT1I LTR MaLR 7 388 -21 1142 184 28 18 chr1 24202665 24202882 -257990782 - MER20 DNA MER1_type 0 219 1 1894 137 47 3 chr1 24202895 24203194 -257990470 - AluSx SINE Alu 0 312 1 357 177 89 13 chr1 24203630 24203709 -257989955 - MIR SINE MIR -71 191 107 216 354 31 24 chr1 24203786 24203913 -257989751 + MER5B DNA MER1_type 7 134 -44 2611 55 3 0 chr1 24203923 24204231 -257989433 + AluY SINE Alu 1 309 -2 2473 83 0 0 chr1 24204231 24204532 -257989132 + AluSc SINE Alu 1 302 -7 301 157 29 57 chr1 24204532 24204602 -257989062 + L2 LINE L2 3160 3227 -86 2414 93 13 0 chr1 24204603 24204904 -257988760 - AluSp SINE Alu -8 305 1 1846 162 10 22 chr1 24204904 24205082 -257988582 - AluJb SINE Alu -2 310 131 263 27 0 27 chr1 24205082 24205119 -257988545 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 1944 94 4 0 chr1 24205120 24205364 -257988300 - AluSp SINE Alu -68 245 1 1846 162 10 22 chr1 24205364 24205497 -257988167 - AluJb SINE Alu -180 132 1 187 238 0 71 chr1 24205632 24205674 -257987990 - MER5A DNA MER1_type -1 188 150 2298 95 0 14 chr1 24205678 24205974 -257987690 + AluSx SINE Alu 1 292 -20 2144 92 35 50 chr1 24205986 24206303 -257987361 + AluSx SINE Alu 1 312 0 1725 177 48 22 chr1 24206327 24206683 -257986981 - MLT1A1 LTR MaLR 0 365 1 1668 179 24 7 chr1 24206837 24207134 -257986530 + AluJb SINE Alu 1 302 -10 1793 110 110 18 chr1 24207335 24207616 -257986048 + AluSg1 SINE Alu 1 307 -2 350 270 108 18 chr1 24207712 24207823 -257985841 + MIR SINE MIR 14 134 -128 248 277 134 34 chr1 24207923 24208042 -257985622 + MIR SINE MIR 129 259 -3 193 319 11 43 chr1 24208382 24208476 -257985188 + MIR SINE MIR 24 114 -148 1864 157 11 0 chr1 24208490 24208777 -257984887 - AluJb SINE Alu -11 301 12 1617 190 26 0 chr1 24208854 24209122 -257984542 - AluJb SINE Alu -37 275 1 229 330 38 66 chr1 24212242 24212321 -257981343 - MIR SINE MIR -138 124 47 1232 196 88 28 chr1 24212321 24212606 -257981058 - AluSx SINE Alu -10 302 1 229 330 38 66 chr1 24212606 24212632 -257981032 - MIR SINE MIR -215 47 22 2478 87 0 3 chr1 24212953 24213264 -257980400 + AluSg SINE Alu 1 310 0 1257 165 19 5 chr1 24213469 24213675 -257979989 - AluSg/x SINE Alu -14 296 88 2313 84 3 3 chr1 24213728 24214015 -257979649 + AluY SINE Alu 1 287 -24 1213 146 43 0 chr1 24214015 24214200 -257979464 - AluJo SINE Alu -117 195 3 2064 149 7 0 chr1 24215730 24216026 -257977638 - AluSx SINE Alu -14 298 1 965 180 56 2 chr1 24216349 24216587 -257977077 + AluJo SINE Alu 1 298 -14 870 162 17 2 chr1 24217571 24217800 -257975864 + AluSx SINE Alu 22 305 -5 545 235 35 18 chr1 24217853 24218023 -257975641 - L1MC4a LINE L1 -1919 5889 5717 577 301 46 25 chr1 24218087 24218326 -257975338 - MIR SINE MIR 0 262 19 1588 159 43 53 chr1 24218361 24218574 -257975090 - AluJo SINE Alu -13 299 88 2286 104 0 0 chr1 24218574 24218863 -257974801 - AluSq SINE Alu -22 291 3 1588 159 43 53 chr1 24218863 24218951 -257974713 - AluJo SINE Alu -224 88 1 2638 51 0 16 chr1 24221046 24221359 -257972305 + AluY SINE Alu 1 308 -3 252 220 138 9 chr1 24221362 24221471 -257972193 + L1ME4a LINE L1 5988 6110 -11 295 272 110 15 chr1 24221890 24222026 -257971638 - MIR SINE MIR -2 260 112 1327 130 97 15 chr1 24222085 24222354 -257971310 - L1MB7 LINE L1 -20 6164 5874 408 246 146 8 chr1 24222632 24222762 -257970902 - MIR SINE MIR -111 151 4 589 314 69 16 chr1 24223142 24223387 -257970277 + MIR SINE MIR 2 259 -3 492 265 77 12 chr1 24224014 24224184 -257969480 - MIR SINE MIR -10 252 72 2442 88 3 0 chr1 24224894 24225200 -257968464 - AluSq SINE Alu -6 307 1 2483 79 3 0 chr1 24225215 24225519 -257968145 - AluSq SINE Alu -8 305 1 1824 69 4 4 chr1 24226847 24227078 -257966586 + AluSg/x SINE Alu 73 303 -6 370 298 38 67 chr1 24228562 24228828 -257964836 - MIR SINE MIR -23 185 35 284 140 60 0 chr1 24228834 24228884 -257964780 + L2 LINE L2 3261 3313 0 234 255 0 20 chr1 24229534 24229585 -257964079 + MIR SINE MIR 17 66 -142 1837 132 59 33 chr1 24229793 24230096 -257963568 + AluJo SINE Alu 1 311 -1 2459 96 0 0 chr1 24230209 24230511 -257963153 - AluSx SINE Alu -10 302 1 36 0 0 0 chr1 24230761 24230797 -257962867 + AT_rich Low_complexity Low_complexity 1 36 0 2247 62 7 7 chr1 24231012 24231286 -257962378 - AluY SINE Alu -37 274 1 1774 151 38 24 chr1 24231291 24231582 -257962082 - AluJb SINE Alu -17 295 1 2259 95 30 0 chr1 24231701 24231997 -257961667 + AluSx SINE Alu 1 305 -7 1435 132 41 101 chr1 24231999 24232317 -257961347 + AluSq SINE Alu 1 299 -14 328 299 31 31 chr1 24232499 24232626 -257961038 + MIR SINE MIR 11 137 -125 2463 97 0 0 chr1 24232793 24233103 -257960561 - AluSx SINE Alu -2 310 1 2131 113 30 7 chr1 24233533 24233834 -257959830 + AluSx SINE Alu 1 308 -4 219 184 189 160 chr1 24233922 24234094 -257959570 + L2 LINE L2 3101 3281 -32 2443 92 0 3 chr1 24234094 24234400 -257959264 - AluSq SINE Alu -8 305 1 219 184 189 160 chr1 24234400 24234433 -257959231 + L2 LINE L2 3281 3312 -1 191 204 45 0 chr1 24234501 24234545 -257959119 - MIR SINE MIR -63 145 100 1906 142 64 3 chr1 24234635 24234930 -257958734 + 7SLRNA srpRNA srpRNA 1 313 -7 22 0 0 0 chr1 24235140 24235162 -257958502 + AT_rich Low_complexity Low_complexity 1 22 0 2353 61 4 0 chr1 24235163 24235483 -257958181 + AluY SINE Alu 1 321 0 2396 92 3 0 chr1 24235602 24235896 -257957768 - AluSg SINE Alu -15 295 1 275 327 71 9 chr1 24235905 24236018 -257957646 - MIR SINE MIR -120 142 23 568 275 46 62 chr1 24236158 24236398 -257957266 - MIR SINE MIR -7 255 20 290 294 73 57 chr1 24236492 24236669 -257956995 - L2 LINE L2 -431 2883 2704 2045 118 4 0 chr1 24236737 24237017 -257956647 + AluSx SINE Alu 21 301 -11 357 228 416 0 chr1 24237079 24237228 -257956436 + L2 LINE L2 3023 3233 -80 2317 83 21 0 chr1 24237237 24237527 -257956137 - AluSp SINE Alu -17 296 1 21 0 0 0 chr1 24237527 24237548 -257956116 + AT_rich Low_complexity Low_complexity 1 21 0 739 169 46 8 chr1 24237548 24237678 -257955986 - AluJo SINE Alu -177 135 1 259 206 87 54 chr1 24237679 24237745 -257955919 + L2 LINE L2 3218 3289 -24 2307 118 7 0 chr1 24237745 24238051 -257955613 - AluSx SINE Alu -4 308 1 259 206 87 54 chr1 24238051 24238076 -257955588 + L2 LINE L2 3289 3312 -1 660 334 63 52 chr1 24238093 24238367 -257955297 + L2 LINE L2 1777 2046 -1268 2250 99 0 33 chr1 24238367 24238670 -257954994 + AluSx SINE Alu 1 293 -19 660 334 63 52 chr1 24238670 24238997 -257954667 + L2 LINE L2 2046 2385 -929 337 323 89 46 chr1 24239223 24239376 -257954288 + L2 LINE L2 2298 2443 -871 2322 94 0 10 chr1 24239376 24239674 -257953990 - AluSx SINE Alu -17 295 1 337 323 89 46 chr1 24239674 24239802 -257953862 + L2 LINE L2 2443 2591 -723 2250 113 0 3 chr1 24239850 24240152 -257953512 - AluSq SINE Alu -12 301 1 2108 125 0 3 chr1 24240159 24240447 -257953217 - AluSc SINE Alu -22 287 1 534 163 96 104 chr1 24240513 24240661 -257953003 - MER113 DNA MER1_type? -252 269 122 2292 130 0 0 chr1 24240661 24240969 -257952695 + AluSg SINE Alu 1 308 -2 534 163 96 104 chr1 24240969 24241060 -257952604 - MER113 DNA MER1_type? -399 122 32 1073 139 6 6 chr1 24241060 24241273 -257952391 + AluJo SINE Alu 118 330 0 232 127 79 32 chr1 24241321 24241384 -257952280 + MER116 DNA Mariner 1 66 -14 2371 78 14 3 chr1 24241384 24241679 -257951985 + AluSq SINE Alu 1 298 -15 2179 116 0 17 chr1 24241696 24241989 -257951675 + AluSx SINE Alu 7 294 -18 376 294 188 33 chr1 24242038 24242310 -257951354 + L2 LINE L2 2866 3179 -93 417 293 62 36 chr1 24242354 24242579 -257951085 - L2 LINE L2 -188 3084 2854 2452 106 0 0 chr1 24242864 24243176 -257950488 + AluSx SINE Alu 1 312 0 226 224 69 0 chr1 24243392 24243450 -257950214 - L2 LINE L2 -4 3309 3248 236 264 0 69 chr1 24243633 24243720 -257949944 + L1ME LINE L1 5389 5469 -695 607 249 129 5 chr1 24243853 24244054 -257949610 + Charlie8 DNA MER1_type 1 226 -2191 356 264 153 28 chr1 24244292 24244436 -257949228 - MIR SINE MIR -64 198 37 783 258 43 5 chr1 24244436 24244645 -257949019 - MIR SINE MIR -5 257 41 2528 78 0 0 chr1 24244857 24245163 -257948501 - AluSp SINE Alu -7 306 1 720 179 0 30 chr1 24245266 24245400 -257948264 + FLAM_C SINE Alu 1 130 -3 2120 108 18 0 chr1 24245405 24245717 -257947947 + AluSx SINE Alu 1 317 0 2224 104 0 0 chr1 24245719 24246018 -257947646 + AluSg SINE Alu 4 302 0 2411 72 0 47 chr1 24246038 24246356 -257947308 - AluY SINE Alu -8 303 1 2372 75 0 3 chr1 24246356 24246650 -257947014 - AluSx SINE Alu -19 293 1 542 239 58 22 chr1 24246709 24246888 -257946776 - L1MC/D LINE L1 -740 5572 5476 2437 74 3 3 chr1 24247058 24247356 -257946308 - AluSp SINE Alu -15 298 1 2324 98 0 3 chr1 24247694 24247999 -257945665 + AluSg SINE Alu 1 304 -6 2549 56 0 7 chr1 24248058 24248361 -257945303 + AluY SINE Alu 1 301 -10 251 346 132 11 chr1 24248380 24248646 -257945018 + L2 LINE L2 2369 2666 -648 323 194 41 102 chr1 24248727 24248825 -257944839 - MER5B DNA MER1_type -3 175 84 2333 102 16 0 chr1 24248826 24249130 -257944534 - AluSp SINE Alu -3 310 2 2388 89 0 0 chr1 24249131 24249424 -257944240 - AluSg SINE Alu -17 293 1 1784 142 84 0 chr1 24249431 24249705 -257943959 - AluJb SINE Alu -15 297 1 2456 101 0 0 chr1 24249717 24250025 -257943639 - AluSx SINE Alu -4 308 1 312 274 22 74 chr1 24250030 24250165 -257943499 - L2 LINE L2 0 3272 3145 2354 87 19 19 chr1 24250184 24250494 -257943170 - AluSx SINE Alu 0 312 3 285 89 0 0 chr1 24250510 24250555 -257943109 + (T)n Simple_repeat Simple_repeat 1 45 0 299 351 136 35 chr1 24250575 24250914 -257942750 + L2 LINE L2 2836 3208 -64 920 210 75 71 chr1 24251242 24251509 -257942155 - MER115 DNA AcHobo -8 685 418 1873 150 75 112 chr1 24251514 24251620 -257942044 + MLT1D LTR MaLR 6 114 -391 854 147 0 0 chr1 24251620 24251736 -257941928 + FLAM_C SINE Alu 1 116 -17 1873 150 75 112 chr1 24251736 24252148 -257941516 + MLT1D LTR MaLR 114 505 0 744 221 191 4 chr1 24252158 24252420 -257941244 - MER115 DNA AcHobo -281 412 102 219 178 200 0 chr1 24252425 24252470 -257941194 + MIR SINE MIR 89 142 -66 351 267 79 69 chr1 24252782 24252984 -257940680 + L2 LINE L2 2848 3051 -262 25 51 0 0 chr1 24253111 24253150 -257940514 + AT_rich Low_complexity Low_complexity 1 39 0 2764 159 51 30 chr1 24253183 24253756 -257939908 - L1MB3 LINE L1 -1 6182 5598 189 292 21 0 chr1 24253805 24253853 -257939811 + L2 LINE L2 3143 3191 -81 244 273 193 0 chr1 24253854 24253942 -257939722 + L2 LINE L2 3109 3213 -59 2294 101 13 13 chr1 24254269 24254577 -257939087 - AluSg SINE Alu 0 310 3 564 222 151 0 chr1 24254577 24254703 -257938961 - FAM SINE Alu -29 156 12 766 164 8 15 chr1 24254806 24254940 -257938724 + FLAM_A SINE Alu 1 133 0 265 283 243 17 chr1 24254979 24255156 -257938508 + MIR SINE MIR 2 218 -44 2421 109 0 0 chr1 24255400 24255711 -257937953 + AluSx SINE Alu 1 311 -1 239 313 169 0 chr1 24255921 24256004 -257937660 + MIR SINE MIR 2 99 -109 1145 165 192 4 chr1 24256184 24256444 -257937220 + MER21B LTR ERV1 354 662 -201 339 258 13 66 chr1 24256608 24256704 -257936960 + L2 LINE L2 2622 2709 -605 691 213 0 22 chr1 24256704 24256840 -257936824 + FLAM_A SINE Alu 1 133 0 339 258 13 66 chr1 24256840 24256894 -257936770 + L2 LINE L2 2709 2764 -550 509 154 43 111 chr1 24256933 24256978 -257936686 + MER5A DNA MER1_type 27 74 -115 2442 81 3 0 chr1 24256978 24257274 -257936390 - AluSq SINE Alu -16 297 1 509 154 43 111 chr1 24257274 24257345 -257936319 + MER5A DNA MER1_type 74 135 -54 2245 111 0 10 chr1 24257345 24257643 -257936021 - AluSx SINE Alu -17 295 1 334 277 11 21 chr1 24257643 24257737 -257935927 - L3 LINE CR1 -445 1132 1040 2482 82 0 0 chr1 24258117 24258420 -257935244 - AluY SINE Alu -8 303 1 190 284 118 29 chr1 24258742 24258844 -257934820 + L2 LINE L2 2548 2658 -656 2571 59 7 0 chr1 24258887 24259194 -257934470 - AluY SINE Alu -2 309 1 439 242 187 16 chr1 24259255 24259437 -257934227 - MIR SINE MIR -30 232 20 744 224 41 0 chr1 24259810 24259980 -257933684 - MER113 DNA MER1_type? -3 518 342 430 173 13 0 chr1 24259985 24260060 -257933604 + MIR SINE MIR 12 87 -175 220 215 169 15 chr1 24260069 24260134 -257933530 + L2 LINE L2 3239 3313 0 1071 158 38 6 chr1 24260992 24261175 -257932489 + MER5A DNA MER1_type 1 189 0 372 297 50 0 chr1 24261383 24261484 -257932180 + MIR SINE MIR 35 140 -68 282 163 0 0 chr1 24261558 24261607 -257932057 + L2 LINE L2 1384 1432 -1882 255 290 0 86 chr1 24261573 24261666 -257931998 - L2 LINE L2 -1129 2185 2101 * 2620 237 144 80 chr1 24261676 24262305 -257931359 + L2 LINE L2 1430 2018 -1295 2711 48 0 0 chr1 24262305 24262614 -257931050 - AluY SINE Alu -2 309 1 1592 181 0 41 chr1 24262615 24262908 -257930756 - AluJo SINE Alu -31 281 1 2620 237 144 80 chr1 24262908 24263370 -257930294 + L2 LINE L2 2018 2449 -864 450 145 0 0 chr1 24263370 24263439 -257930225 - AluJb SINE Alu -92 220 152 2620 237 144 80 chr1 24263439 24264068 -257929596 + L2 LINE L2 2449 3311 -2 2468 53 0 10 chr1 24264083 24264382 -257929282 - AluY SINE Alu -15 296 1 1698 137 59 42 chr1 24264403 24264574 -257929090 - AluSx SINE Alu 0 312 132 2479 57 3 17 chr1 24264574 24264875 -257928789 - AluSp SINE Alu -16 297 1 1698 137 59 42 chr1 24264875 24265010 -257928654 - AluSx SINE Alu -180 132 1 1257 178 0 61 chr1 24265010 24265179 -257928485 - AluJo SINE Alu -11 301 123 2347 79 10 10 chr1 24265179 24265483 -257928181 - AluSc SINE Alu -5 304 1 2178 127 7 0 chr1 24265485 24265785 -257927879 - AluSx SINE Alu -10 302 1 1257 178 0 61 chr1 24265785 24265876 -257927788 - AluJo SINE Alu -190 122 54 296 275 121 67 chr1 24266157 24266306 -257927358 - MER5A DNA MER1_type -7 182 15 244 339 31 0 chr1 24266308 24266373 -257927291 + L3b LINE CR1 1506 1572 -11 821 195 40 0 chr1 24266451 24266600 -257927064 + FRAM SINE Alu 1 155 -21 1855 134 105 9 chr1 24266613 24266955 -257926709 + THE1C LTR MaLR 1 375 0 1927 132 29 0 chr1 24266977 24267286 -257926378 + AluSx SINE Alu 1 317 0 245 183 94 153 chr1 24267298 24267500 -257926164 - MER112 DNA MER1_type -70 190 1 323 280 95 53 chr1 24267611 24267800 -257925864 - L1ME4a LINE L1 -157 5964 5768 319 262 9 65 chr1 24267784 24267891 -257925773 - L1MC4 LINE L1 -1338 6704 6604 * 199 56 93 0 chr1 24267893 24267947 -257925717 + (TA)n Simple_repeat Simple_repeat 1 59 0 2072 112 11 3 chr1 24267949 24268234 -257925430 - AluSq SINE Alu -26 287 1 907 162 14 0 chr1 24268234 24268376 -257925288 - FRAM SINE Alu -12 164 21 23 0 0 0 chr1 24268448 24268471 -257925193 + AT_rich Low_complexity Low_complexity 1 23 0 488 214 129 34 chr1 24268815 24268993 -257924671 - MIR SINE MIR -1 261 67 2375 96 0 0 chr1 24269493 24269796 -257923868 - AluY SINE Alu -8 303 1 1451 165 116 15 chr1 24269800 24270067 -257923597 - AluJo SINE Alu -14 298 5 1598 157 97 0 chr1 24270069 24270337 -257923327 - AluJb SINE Alu -18 294 1 886 133 13 0 chr1 24270339 24270497 -257923167 - L1MA4 LINE L1 -3 6297 6138 904 45 0 27 chr1 24270502 24270614 -257923050 + AluY SINE Alu 194 302 -9 385 162 144 0 chr1 24270621 24270732 -257922932 - L1MA4 LINE L1 -168 6132 6006 188 161 0 0 chr1 24270742 24270773 -257922891 - MIR SINE MIR -225 37 7 1928 110 0 0 chr1 24271017 24271272 -257922392 + AluSg SINE Alu 44 298 -12 1132 171 9 43 chr1 24271905 24272116 -257921548 + AluJb SINE Alu 88 291 -21 354 219 305 0 chr1 24272676 24272781 -257920883 - MER5A DNA MER1_type -13 176 40 246 286 77 44 chr1 24272939 24273030 -257920634 - MIR3 SINE MIR -105 103 10 1497 126 137 36 chr1 24273730 24274008 -257919656 + AluSg SINE Alu 2 307 -3 2281 74 30 0 chr1 24274058 24274357 -257919307 + AluY SINE Alu 1 308 -3 478 214 189 19 chr1 24274452 24274611 -257919053 - MIR SINE MIR -18 244 59 225 321 36 12 chr1 24276510 24276594 -257917070 + L2 LINE L2 3150 3235 -37 2097 122 0 13 chr1 24277129 24277433 -257916231 - AluSx SINE Alu -12 300 1 265 287 96 11 chr1 24278079 24278173 -257915491 - MIR SINE MIR -108 154 53 371 255 209 20 chr1 24278187 24278340 -257915324 - MIR SINE MIR -41 221 40 311 200 143 0 chr1 24278348 24278418 -257915246 - FRAM SINE Alu -16 150 71 2130 87 0 7 chr1 24280085 24280391 -257913273 - AluSx SINE Alu 0 305 2 286 261 68 11 chr1 24280421 24280509 -257913155 + MIR SINE MIR 12 104 -158 4254 112 12 104 chr1 24280510 24280892 -257912772 - Tigger4(Zombi) DNA MER2_type 0 2731 2316 2375 39 0 48 chr1 24280892 24281203 -257912461 + AluY SINE Alu 1 296 -15 4254 112 12 104 chr1 24281203 24281373 -257912291 - Tigger4(Zombi) DNA MER2_type -415 2316 2132 2031 120 0 0 chr1 24281373 24281684 -257911980 + AluSx SINE Alu 1 311 0 4254 112 12 104 chr1 24281684 24281758 -257911906 - Tigger4(Zombi) DNA MER2_type -599 2132 2053 7066 63 14 12 chr1 24281758 24283371 -257910293 - SVA Other Other -723 1384 1 4254 112 12 104 chr1 24283371 24283531 -257910133 - Tigger4(Zombi) DNA MER2_type -678 2053 2028 1907 160 0 3 chr1 24283531 24283844 -257909820 - AluJb SINE Alu 0 312 1 4254 112 12 104 chr1 24283844 24283939 -257909725 - Tigger4(Zombi) DNA MER2_type -703 2028 1926 2344 89 0 13 chr1 24283941 24284257 -257909407 - AluSx SINE Alu 0 312 1 434 249 287 31 chr1 24285050 24285339 -257908325 - L2 LINE L2 -25 3288 2926 2357 86 0 0 chr1 24285341 24285654 -257908010 + AluSq SINE Alu 1 313 0 866 200 40 6 chr1 24285689 24285864 -257907800 + MER5A DNA MER1_type 1 181 -8 225 341 30 30 chr1 24286016 24286148 -257907516 + L2 LINE L2 2733 2864 -450 426 331 7 14 chr1 24286190 24286335 -257907329 + L2 LINE L2 2940 3083 -189 491 331 89 72 chr1 24286418 24286723 -257906941 - L1MC4a LINE L1 -1628 6180 5865 1439 159 132 12 chr1 24286723 24287001 -257906663 + AluJb SINE Alu 1 302 0 491 331 89 72 chr1 24287001 24287112 -257906552 - L1MC4a LINE L1 -1943 5865 5757 2014 194 120 37 chr1 24287116 24287626 -257906038 + MER74B LTR ERVL 56 607 -15 376 246 105 26 chr1 24288057 24288171 -257905493 + MIR3 SINE MIR 13 135 -73 717 203 264 66 chr1 24288274 24288698 -257904966 + LTR33 LTR ERVL 14 521 0 727 113 50 78 chr1 24288709 24288850 -257904814 - AluJb SINE Alu -174 138 2 466 273 0 16 chr1 24289344 24289497 -257904167 + AluSg/x SINE Alu 174 309 0 338 278 61 83 chr1 24289497 24289558 -257904106 - L2 LINE L2 -620 2694 2633 2028 67 50 21 chr1 24289558 24289841 -257903823 + AluY SINE Alu 2 292 -19 2428 42 10 0 chr1 24289843 24290150 -257903514 + AluY SINE Alu 1 310 -1 338 278 61 83 chr1 24290150 24290265 -257903399 - L2 LINE L2 -682 2632 2519 1116 275 84 28 chr1 24290271 24290845 -257902819 - L2 LINE L2 -1347 1967 1362 2081 128 0 0 chr1 24291166 24291464 -257902200 + AluSx SINE Alu 1 298 -14 324 291 86 0 chr1 24291652 24291769 -257901895 - MIR3 SINE MIR -1 207 81 1044 158 0 2 chr1 24291786 24292243 -257901421 + (CAT)n Simple_repeat Simple_repeat 1 456 0 281 241 69 11 chr1 24292291 24292378 -257901286 - MIR SINE MIR -70 192 101 806 275 66 49 chr1 24292603 24292641 -257901023 + L2 LINE L2 2677 2713 -600 1899 145 0 13 chr1 24292641 24292945 -257900719 + AluSx SINE Alu 1 300 -12 806 275 66 49 chr1 24292945 24293013 -257900651 + L2 LINE L2 2713 2778 -535 2267 72 0 30 chr1 24293013 24293317 -257900347 + AluY SINE Alu 1 295 -16 806 275 66 49 chr1 24293317 24293809 -257899855 + L2 LINE L2 2778 3280 -33 760 232 54 29 chr1 24293812 24294053 -257899611 - MIR SINE MIR -13 249 3 2052 146 0 9 chr1 24294110 24294425 -257899239 + AluSx SINE Alu 1 312 0 1567 292 60 21 chr1 24294567 24294691 -257898973 + L1ME3A LINE L1 5273 5391 -771 2098 94 37 10 chr1 24294691 24294815 -257898849 + AluSq SINE Alu 1 120 -193 2423 59 7 3 chr1 24294815 24295122 -257898542 + AluY SINE Alu 1 308 -3 2098 94 37 10 chr1 24295122 24295296 -257898368 + AluSq SINE Alu 120 307 -6 1567 292 60 21 chr1 24295296 24295826 -257897838 + L1ME3A LINE L1 5391 5952 -210 265 286 8 56 chr1 24295902 24296028 -257897636 + L1ME3A LINE L1 5963 6082 -88 2067 122 7 0 chr1 24296145 24296440 -257897224 + AluSq SINE Alu 1 297 -16 214 260 143 39 chr1 24296465 24296542 -257897122 - L2 LINE L2 -1 3271 3187 755 274 53 13 chr1 24296578 24296804 -257896860 + MIR SINE MIR 17 251 -11 993 34 0 0 chr1 24296806 24296925 -257896739 + AluY SINE Alu 181 299 -12 231 292 191 46 chr1 24296925 24297596 -257896068 - L2 LINE L2 -689 2625 1858 285 231 22 55 chr1 24297781 24297872 -257895792 - MIR SINE MIR -58 204 117 301 342 43 22 chr1 24297975 24298159 -257895505 - MER5A DNA MER1_type 0 189 2 221 0 0 33 chr1 24298584 24298614 -257895050 + (CGG)n Simple_repeat Simple_repeat 2 30 0 324 203 54 14 chr1 24298894 24298968 -257894696 + MIR SINE MIR 94 170 -92 1231 99 0 28 chr1 24299838 24300020 -257893644 + AluSg/x SINE Alu 131 307 -5 363 308 86 26 chr1 24300050 24300157 -257893507 - L2 LINE L2 -521 2793 2694 2144 125 0 0 chr1 24300157 24300453 -257893211 + AluSx SINE Alu 1 296 -16 363 308 86 26 chr1 24300453 24300579 -257893085 - L2 LINE L2 -620 2694 2546 806 271 47 111 chr1 24300844 24301084 -257892580 - MLT1K LTR MaLR -8 580 391 2241 110 0 0 chr1 24301084 24301392 -257892272 + AluSx SINE Alu 1 308 -4 806 271 47 111 chr1 24301392 24301685 -257891979 - MLT1K LTR MaLR -197 391 81 293 291 29 29 chr1 24302009 24302112 -257891552 + MIR SINE MIR 120 222 -40 348 83 0 0 chr1 24302133 24302181 -257891483 + (TTCA)n Simple_repeat Simple_repeat 3 50 0 261 290 165 67 chr1 24302182 24302406 -257891258 - L2 LINE L2 -12 3260 3015 204 193 18 70 chr1 24302405 24302462 -257891202 - MIR SINE MIR -11 251 198 * 380 326 7 22 chr1 24303119 24303254 -257890410 - MIR3 SINE MIR -61 147 15 489 306 50 6 chr1 24303450 24303610 -257890054 - MIR SINE MIR -65 197 31 670 290 16 16 chr1 24303714 24303907 -257889757 + MIR SINE MIR 1 193 -69 234 198 0 128 chr1 24304127 24304213 -257889451 + MER69 DNA AcHobo 2452 2526 0 504 211 141 21 chr1 24304221 24304363 -257889301 + MIR SINE MIR 102 260 -2 245 170 223 21 chr1 24304473 24304567 -257889097 - MIR SINE MIR -147 115 3 348 257 200 46 chr1 24305183 24305358 -257888306 + MIR SINE MIR 60 261 -1 813 278 36 20 chr1 24305434 24305682 -257887982 - MIR SINE MIR -9 253 2 263 293 61 41 chr1 24305682 24305820 -257887844 + MIR SINE MIR 52 192 -70 197 351 0 0 chr1 24306142 24306199 -257887465 + MIR SINE MIR 65 121 -141 550 249 52 3 chr1 24306276 24306446 -257887218 + MIR SINE MIR 19 262 0 1184 136 0 16 chr1 24306460 24306636 -257887028 - AluSg/x SINE Alu -3 307 133 2135 105 0 3 chr1 24306636 24306932 -257886732 - AluY SINE Alu -15 296 2 1184 136 0 16 chr1 24306932 24306946 -257886718 - AluSg/x SINE Alu -177 133 120 1655 243 89 8 chr1 24307000 24307473 -257886191 + LTR33 LTR ERVL 3 513 -8 478 324 47 0 chr1 24307578 24307726 -257885938 - L2 LINE L2 -2 3270 3116 1738 115 35 4 chr1 24307749 24308010 -257885654 + AluSx SINE Alu 1 269 -43 181 205 0 26 chr1 24308254 24308293 -257885371 + L2 LINE L2 3035 3072 -200 439 261 43 7 chr1 24308341 24308479 -257885185 - MIR SINE MIR -99 163 21 2297 89 3 0 chr1 24308656 24308959 -257884705 - AluSx SINE Alu -6 306 3 189 74 0 0 chr1 24309610 24309637 -257884027 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 260 281 16 62 chr1 24309805 24309933 -257883731 - L2 LINE L2 -174 3098 2977 440 276 97 7 chr1 24310153 24310298 -257883366 - MIR3 SINE MIR -35 173 16 367 245 132 0 chr1 24310465 24310571 -257883093 - MIR SINE MIR -64 198 79 2216 84 3 10 chr1 24311018 24311315 -257882349 + AluSc SINE Alu 1 295 -14 220 244 0 0 chr1 24311415 24311456 -257882208 - L2 LINE L2 -6 3266 3226 1417 188 0 0 chr1 24311646 24311886 -257881778 + AluJo SINE Alu 14 253 -59 718 229 17 52 chr1 24311913 24312144 -257881520 - MIR SINE MIR 0 262 40 2233 64 0 7 chr1 24312444 24312739 -257880925 - AluY SINE Alu -18 293 1 2277 98 0 0 chr1 24312739 24313036 -257880628 - AluSx SINE Alu -15 297 1 2106 207 47 7 chr1 24313048 24313493 -257880171 - MLT1C LTR MaLR -2 465 3 269 321 159 44 chr1 24313955 24314207 -257879457 + L2 LINE L2 2560 2840 -474 2249 116 0 0 chr1 24314326 24314629 -257879035 - AluSx SINE Alu -9 303 1 190 370 12 0 chr1 24314679 24314760 -257878904 + L2 LINE L2 2916 2997 -275 1448 174 65 4 chr1 24314818 24315093 -257878571 + AluJo SINE Alu 1 292 -20 369 226 98 0 chr1 24315230 24315332 -257878332 + MIR SINE MIR 42 153 -55 318 186 174 0 chr1 24315586 24315672 -257877992 - MIR3 SINE MIR -34 174 74 553 312 91 38 chr1 24316178 24316309 -257877355 - L2 LINE L2 -77 3236 3113 1621 141 108 7 chr1 24316309 24316586 -257877078 + AluSg SINE Alu 1 305 -5 553 312 91 38 chr1 24316586 24316932 -257876732 - L2 LINE L2 -200 3113 2787 2236 92 0 3 chr1 24316932 24317237 -257876427 - AluSx SINE Alu -8 304 1 553 312 91 38 chr1 24317237 24317591 -257876073 - L2 LINE L2 -526 2787 2325 343 297 58 7 chr1 24317663 24317801 -257875863 + L2 LINE L2 3168 3312 -1 910 182 0 0 chr1 24317854 24318013 -257875651 - AluSx SINE Alu 0 312 154 559 132 0 0 chr1 24318014 24318090 -257875574 - AluSx SINE Alu -235 77 2 2290 68 3 3 chr1 24318091 24318386 -257875278 - AluSx SINE Alu -13 299 5 1156 222 20 4 chr1 24318505 24318753 -257874911 - MIR SINE MIR -1 261 10 207 284 176 14 chr1 24318808 24318882 -257874782 + L2 LINE L2 3208 3293 -20 494 249 60 32 chr1 24318991 24319176 -257874488 - MIR SINE MIR -58 204 15 200 200 0 55 chr1 24319369 24319424 -257874240 + C-rich Low_complexity Low_complexity 6 57 0 254 276 69 23 chr1 24319745 24319832 -257873832 + L2 LINE L2 3182 3272 0 640 298 130 34 chr1 24319925 24320278 -257873386 + L2 LINE L2 2926 3312 -1 4382 90 67 7 chr1 24320585 24321184 -257872480 - MER41B LTR ERV1 0 635 1 325 193 0 0 chr1 24321343 24321400 -257872264 - L2 LINE L2 -1 3271 3215 290 315 43 0 chr1 24321760 24321852 -257871812 - L2 LINE L2 0 3272 3177 198 0 0 0 chr1 24321890 24321912 -257871752 + (T)n Simple_repeat Simple_repeat 1 22 0 314 211 0 13 chr1 24371926 24372002 -257821662 - MLT1C LTR MaLR -359 108 34 2373 81 0 0 chr1 24372004 24372313 -257821351 + AluY SINE Alu 1 309 -2 204 40 0 0 chr1 24372359 24372384 -257821280 + (CCA)n Simple_repeat Simple_repeat 2 26 0 1700 175 0 3 chr1 24372512 24372804 -257820860 - AluJo SINE Alu -18 294 4 481 186 0 0 chr1 24373022 24373108 -257820556 + MIR SINE MIR 102 187 -75 273 191 0 0 chr1 24373123 24373170 -257820494 - L2 LINE L2 -3 3310 3264 333 281 175 9 chr1 24373759 24373873 -257819791 + L2 LINE L2 3136 3268 -4 407 258 38 23 chr1 24374677 24374809 -257818855 - MIR3 SINE MIR -30 178 45 268 267 0 103 chr1 24374970 24375021 -257818643 - MIR SINE MIR -50 212 178 1223 120 17 81 chr1 24375021 24375255 -257818409 + MER20 DNA MER1_type 1 219 0 268 267 0 103 chr1 24375255 24375319 -257818345 - MIR SINE MIR -84 178 109 670 203 196 0 chr1 24375323 24375481 -257818183 + MIR SINE MIR 69 257 -5 1846 191 98 32 chr1 24376502 24376974 -257816690 - MLT1D LTR MaLR 0 505 3 583 306 133 20 chr1 24376992 24377240 -257816424 - Charlie8 DNA MER1_type -2141 276 1 22 35 0 0 chr1 24377749 24377778 -257815886 + AT_rich Low_complexity Low_complexity 1 29 0 703 181 155 20 chr1 24378022 24378228 -257815436 + MIR SINE MIR 31 262 0 375 333 44 28 chr1 24378363 24378543 -257815121 - MIR SINE MIR -77 185 3 362 288 69 16 chr1 24379018 24379175 -257814489 + MIR SINE MIR 18 176 -58 1306 127 5 32 chr1 24379179 24379232 -257814432 + AluJo SINE Alu 87 140 -172 2192 96 0 10 chr1 24379232 24379533 -257814131 + AluY SINE Alu 1 298 -13 1306 127 5 32 chr1 24379533 24379700 -257813964 + AluJo SINE Alu 140 301 -11 2987 172 45 45 chr1 24379713 24380302 -257813362 - L1MB7 LINE L1 0 6184 5593 2238 68 7 36 chr1 24380302 24380609 -257813055 - AluSp SINE Alu -15 298 1 2987 172 45 45 chr1 24380609 24380682 -257812982 - L1MB7 LINE L1 -590 5594 5522 286 277 24 12 chr1 24380682 24380765 -257812899 + MIR SINE MIR 174 257 -5 847 184 30 24 chr1 24381119 24381287 -257812377 + AluJo SINE Alu 1 169 -143 1119 188 62 26 chr1 24381288 24381503 -257812161 + MER33 DNA MER1_type 5 236 -2349 1853 151 3 7 chr1 24381503 24381795 -257811869 + AluJo SINE Alu 1 291 -21 1119 188 62 26 chr1 24381795 24381887 -257811777 + MER33 DNA MER1_type 236 323 -1 594 281 70 5 chr1 24381928 24382113 -257811551 - MIR SINE MIR -46 216 20 366 265 80 37 chr1 24382375 24382567 -257811097 - MIR3 SINE MIR -1 207 1 306 254 21 14 chr1 24383729 24383871 -257809793 + (CGGGG)n Simple_repeat Simple_repeat 2 144 0 2074 117 0 3 chr1 24384166 24384464 -257809200 + AluSx SINE Alu 1 297 -15 324 0 0 0 chr1 24384469 24384505 -257809159 + (CA)n Simple_repeat Simple_repeat 2 37 0 1946 116 7 33 chr1 24384555 24384719 -257808945 - AluSx SINE Alu -19 293 139 2254 76 0 7 chr1 24384719 24385021 -257808643 - AluY SINE Alu -11 300 1 1946 116 7 33 chr1 24385021 24385157 -257808507 - AluSx SINE Alu -173 139 1 427 220 40 10 chr1 24385238 24385338 -257808326 + MIR SINE MIR 45 147 -61 222 284 62 12 chr1 24385900 24385981 -257807683 - L2 LINE L2 -5 3308 3224 2344 93 0 0 chr1 24386410 24386721 -257806943 - AluSx SINE Alu -1 311 1 21 0 0 0 chr1 24386785 24386806 -257806858 + AT_rich Low_complexity Low_complexity 1 21 0 1542 104 142 19 chr1 24387063 24387331 -257806333 + AluSg1 SINE Alu 1 301 -8 499 246 14 28 chr1 24387590 24387732 -257805932 + MIR SINE MIR 8 147 -115 221 300 42 58 chr1 24387998 24388118 -257805546 - MIR SINE MIR -42 220 103 2240 104 0 0 chr1 24388365 24388664 -257805000 + AluSg SINE Alu 2 300 -10 190 347 41 20 chr1 24388664 24388756 -257804908 + MIR3 SINE MIR 12 105 -103 24 32 0 0 chr1 24388910 24388941 -257804723 + AT_rich Low_complexity Low_complexity 1 31 0 247 345 0 0 chr1 24389100 24389210 -257804454 + A-rich Low_complexity Low_complexity 1 110 0 237 235 73 0 chr1 24389874 24389942 -257803722 - MIR SINE MIR -67 141 69 182 274 0 0 chr1 24390222 24390273 -257803391 + L2 LINE L2 3263 3313 0 225 271 86 14 chr1 24390280 24390350 -257803314 - MIR SINE MIR -112 150 76 186 43 0 0 chr1 24390358 24390381 -257803283 + (GAA)n Simple_repeat Simple_repeat 2 24 0 200 327 10 50 chr1 24390685 24390786 -257802878 + MIR SINE MIR 42 138 -70 488 328 51 15 chr1 24390796 24390991 -257802673 - MIR3 SINE MIR -3 205 4 264 217 43 14 chr1 24393031 24393100 -257800564 - MIR SINE MIR -131 131 61 344 238 0 12 chr1 24395356 24395440 -257798224 + MIR SINE MIR 57 139 -123 213 154 26 0 chr1 24395619 24395658 -257798006 + MIR SINE MIR 81 120 -88 235 266 100 108 chr1 24395909 24396150 -257797514 - MIR SINE MIR -4 258 20 185 268 14 70 chr1 24396183 24396254 -257797410 + L2 LINE L2 3204 3270 -2 187 307 80 0 chr1 24396266 24396341 -257797323 + MIR SINE MIR 127 207 -55 370 301 57 8 chr1 24396457 24396580 -257797084 - MIR SINE MIR -114 148 20 208 130 37 19 chr1 24396868 24396922 -257796742 + (CCCCG)n Simple_repeat Simple_repeat 2 56 0 348 327 0 9 chr1 24398099 24398209 -257795455 - MIR SINE MIR -82 126 18 2282 74 7 3 chr1 24398686 24398996 -257794668 - AluY SINE Alu 0 311 1 1658 119 72 18 chr1 24399039 24399317 -257794347 + AluSx SINE Alu 1 293 -19 207 268 0 122 chr1 24399915 24399964 -257793700 + MIR SINE MIR 51 88 -174 1517 176 65 7 chr1 24399964 24400254 -257793410 - AluJb SINE Alu -5 307 1 207 268 0 122 chr1 24400254 24400286 -257793378 + MIR SINE MIR 88 122 -140 346 276 75 0 chr1 24400585 24400766 -257792898 + MIR SINE MIR 51 252 -10 * 357 246 110 27 chr1 24400763 24400893 -257792771 - MIR SINE MIR -64 144 12 578 270 65 20 chr1 24401100 24401300 -257792364 + MIR SINE MIR 4 212 -50 2118 124 0 0 chr1 24401360 24401659 -257792005 - AluSx SINE Alu -13 299 1 1870 179 0 0 chr1 24401720 24402032 -257791632 - AluJb SINE Alu 0 312 1 1890 119 0 55 chr1 24402040 24402352 -257791312 - AluSx SINE Alu -17 295 1 556 206 167 33 chr1 24402429 24402609 -257791055 + MIR SINE MIR 59 262 0 528 242 132 11 chr1 24403052 24403242 -257790422 + MIR SINE MIR 38 250 -12 2247 83 0 16 chr1 24403316 24403629 -257790035 + AluY SINE Alu 1 308 -3 419 270 9 0 chr1 24403758 24403869 -257789795 + MIR SINE MIR 92 203 -59 749 168 0 0 chr1 24403948 24404103 -257789561 - AluJb SINE Alu 0 311 157 216 281 0 0 chr1 24404177 24404234 -257789430 - MIR SINE MIR -1 261 205 201 224 20 0 chr1 24404416 24404465 -257789199 + MIR SINE MIR 118 167 -95 1482 169 37 44 chr1 24404906 24405202 -257788462 - AluJo SINE Alu -18 294 1 1944 115 16 48 chr1 24405208 24405381 -257788283 - AluSc SINE Alu -5 304 144 2177 97 0 7 chr1 24405381 24405681 -257787983 - AluY SINE Alu -13 298 1 1944 115 16 48 chr1 24405681 24405821 -257787843 - AluSc SINE Alu -165 144 1 539 160 10 40 chr1 24405827 24405927 -257787737 - FLAM_A SINE Alu -14 128 32 266 355 47 0 chr1 24405945 24406052 -257787612 - MIR3 SINE MIR -54 154 43 531 291 95 0 chr1 24406109 24406267 -257787397 - MIR SINE MIR -70 192 20 712 295 45 0 chr1 24407177 24407401 -257786263 + MIR SINE MIR 3 236 -26 353 246 76 17 chr1 24407412 24407530 -257786134 + MIR SINE MIR 63 187 -75 1826 167 0 3 chr1 24407570 24407870 -257785794 - AluJo SINE Alu -13 299 1 855 172 0 8 chr1 24407990 24408124 -257785540 + FLAM_C SINE Alu 1 133 0 953 51 17 0 chr1 24408399 24408516 -257785148 + AluSq/x SINE Alu 13 131 -182 2084 101 10 7 chr1 24408518 24408815 -257784849 + AluSx SINE Alu 1 298 -14 738 125 58 8 chr1 24408995 24409115 -257784549 + AluJb SINE Alu 6 131 -181 2369 66 3 0 chr1 24409117 24409421 -257784243 + AluY SINE Alu 1 305 -6 2051 113 0 56 chr1 24409577 24409897 -257783767 + AluSx SINE Alu 1 302 -10 2163 72 0 30 chr1 24409902 24410206 -257783458 + AluY SINE Alu 1 295 -16 2386 42 0 7 chr1 24410248 24410536 -257783128 - AluY SINE Alu -11 300 15 2128 123 3 3 chr1 24410841 24411150 -257782514 + AluSx SINE Alu 1 309 -3 2068 43 0 8 chr1 24411328 24411586 -257782078 + AluY SINE Alu 54 309 -2 198 182 68 0 chr1 24412048 24412092 -257781572 - MIR SINE MIR -93 115 69 2143 106 0 23 chr1 24412163 24412466 -257781198 - AluSx SINE Alu -16 296 1 2114 103 10 0 chr1 24412466 24412757 -257780907 - AluSx SINE Alu -18 294 1 3389 119 15 96 chr1 24412757 24412798 -257780866 - L1MB7 LINE L1 -209 5975 5932 2224 91 0 0 chr1 24412798 24413085 -257780579 + AluSx SINE Alu 21 307 -5 3389 119 15 96 chr1 24413085 24413221 -257780443 - L1MB7 LINE L1 -252 5932 5787 769 168 8 8 chr1 24413221 24413352 -257780312 + AluJo/FLAM SINE Alu 1 131 -171 2141 93 3 20 chr1 24413352 24413652 -257780012 + AluSx SINE Alu 1 295 -17 3389 119 15 96 chr1 24413652 24413704 -257779960 - L1MB7 LINE L1 -396 5788 5733 1649 156 58 7 chr1 24413704 24413979 -257779685 - AluJb SINE Alu -21 291 3 3389 119 15 96 chr1 24413979 24414408 -257779256 - L1MB7 LINE L1 -451 5733 5374 2112 110 0 7 chr1 24414408 24414708 -257778956 - AluSq SINE Alu -15 298 1 3389 119 15 96 chr1 24414708 24414765 -257778899 - L1MB7 LINE L1 -810 5374 5314 261 0 0 0 chr1 24414775 24414804 -257778860 + (CA)n Simple_repeat Simple_repeat 2 30 0 290 292 88 0 chr1 24414837 24414950 -257778714 - MIR SINE MIR -83 179 57 2088 137 0 0 chr1 24414967 24415274 -257778390 - AluSx SINE Alu 0 312 6 2412 44 17 0 chr1 24415278 24415576 -257778088 - AluY SINE Alu -8 303 1 208 269 0 0 chr1 24415588 24415640 -257778024 - L2 LINE L2 -1 3312 3261 229 183 50 17 chr1 24415746 24415806 -257777858 - L1ME4a LINE L1 0 6121 6060 213 238 250 0 chr1 24416087 24416171 -257777493 + MIR SINE MIR 71 175 -87 382 340 131 11 chr1 24416306 24416497 -257777167 + MIR SINE MIR 48 261 -1 200 322 56 0 chr1 24416498 24416588 -257777076 - L2 LINE L2 -19 3294 3200 607 299 51 8 chr1 24416659 24416893 -257776771 - MIR SINE MIR -6 256 13 420 20 0 0 chr1 24417065 24417114 -257776550 + (TG)n Simple_repeat Simple_repeat 2 50 0 2056 102 0 31 chr1 24417114 24417407 -257776257 - AluSx SINE Alu -28 284 1 1846 147 7 3 chr1 24417409 24417702 -257775962 - AluJb SINE Alu -18 294 1 647 338 26 4 chr1 24417767 24417998 -257775666 - MIR SINE MIR -5 257 22 498 264 78 0 chr1 24418206 24418335 -257775329 + MIR SINE MIR 123 261 -1 328 289 17 43 chr1 24418384 24418515 -257775149 - MIR SINE MIR -62 146 35 266 208 0 0 chr1 24418775 24418828 -257774836 - L2 LINE L2 -217 3055 3003 1771 113 62 0 chr1 24418899 24419174 -257774490 + AluSx SINE Alu 1 292 -20 529 293 77 49 chr1 24419185 24419431 -257774233 - MIR SINE MIR 0 262 10 541 292 60 43 chr1 24419853 24420086 -257773578 + MIR SINE MIR 20 256 -6 210 71 0 0 chr1 24420611 24420639 -257773025 + (A)n Simple_repeat Simple_repeat 1 28 0 229 253 103 35 chr1 24421544 24421631 -257772033 + MIR3 SINE MIR 10 102 -106 195 258 11 65 chr1 24421665 24421758 -257771906 - L2 LINE L2 -1 3271 3184 333 230 30 10 chr1 24422133 24422233 -257771431 + MIR SINE MIR 42 143 -65 218 268 0 0 chr1 24422585 24422641 -257771023 - MIR SINE MIR -111 151 96 276 262 90 16 chr1 24422680 24422802 -257770862 - MIR SINE MIR -96 166 36 903 74 8 8 chr1 24422813 24422935 -257770729 - AluJo SINE Alu -178 134 13 316 295 205 13 chr1 24423203 24423359 -257770305 - MIR SINE MIR -14 248 63 271 235 12 37 chr1 24423602 24423683 -257769981 - MIR SINE MIR -110 98 20 1642 93 110 0 chr1 24423780 24424016 -257769648 - AluSq SINE Alu -51 262 1 243 364 20 0 chr1 24424111 24424210 -257769454 - MIR SINE MIR -127 135 35 298 262 28 47 chr1 24424269 24424376 -257769288 + MIR3 SINE MIR 82 186 -22 308 255 255 7 chr1 24424646 24424799 -257768865 - MIR SINE MIR -50 212 22 270 0 0 0 chr1 24424996 24425026 -257768638 + (TG)n Simple_repeat Simple_repeat 1 30 0 324 324 88 7 chr1 24425132 24425280 -257768384 + MIR SINE MIR 25 184 -78 202 234 43 0 chr1 24425512 24425559 -257768105 + MIR SINE MIR 109 157 -105 365 266 51 46 chr1 24426321 24426515 -257767149 - MIR SINE MIR -62 146 3 300 268 45 27 chr1 24427626 24427738 -257765926 - MIR SINE MIR -90 172 59 1844 149 3 0 chr1 24427764 24428086 -257765578 - AluSx SINE Alu 0 312 1 2159 90 7 17 chr1 24428421 24428722 -257764942 + AluSx SINE Alu 1 298 -14 291 192 192 13 chr1 24428877 24428955 -257764709 + MER117 DNA MER1_type 1 92 -105 187 246 49 49 chr1 24428995 24429056 -257764608 + MIR SINE MIR 45 105 -103 1007 194 43 0 chr1 24429304 24429515 -257764149 + MIR SINE MIR 2 221 -41 339 283 88 0 chr1 24429572 24429685 -257763979 + MIR3 SINE MIR 32 154 -54 1867 179 3 0 chr1 24431115 24431416 -257762248 - AluJo SINE Alu -10 302 1 2306 95 9 49 chr1 24431604 24431781 -257761883 - AluSq SINE Alu 0 313 153 2325 110 0 0 chr1 24431781 24432082 -257761582 - AluSq SINE Alu -12 301 1 2306 95 9 49 chr1 24432082 24432230 -257761434 - AluSq SINE Alu -160 153 1 386 276 8 16 chr1 24432230 24432357 -257761307 - L1ME LINE L1 -421 5700 5575 613 303 66 89 chr1 24433151 24433369 -257760295 + L2 LINE L2 2720 2941 -331 2183 108 0 17 chr1 24433369 24433692 -257759972 - AluSg SINE Alu 0 318 1 1870 168 0 3 chr1 24433699 24433990 -257759674 - AluJb SINE Alu -22 290 1 613 303 66 89 chr1 24433990 24434327 -257759337 + L2 LINE L2 2947 3271 -1 1297 254 99 61 chr1 24434642 24435198 -257758466 - MLT1K LTR MaLR -10 578 2 688 160 14 35 chr1 24435742 24435886 -257757778 + MIR SINE MIR 46 186 -76 1889 146 3 17 chr1 24435888 24436190 -257757474 + AluJb SINE Alu 13 310 -2 857 150 0 0 chr1 24436192 24436325 -257757339 + FLAM_C SINE Alu 1 133 0 386 274 18 9 chr1 24436343 24436456 -257757208 - MIR SINE MIR -78 130 17 762 199 107 20 chr1 24436857 24437022 -257756642 + MER58C DNA MER1_type 1 187 -2233 2082 97 10 31 chr1 24437022 24437312 -257756352 - AluSx SINE Alu -8 304 21 762 199 107 20 chr1 24437312 24437342 -257756322 + MER58C DNA MER1_type 187 213 -2 565 248 15 0 chr1 24437344 24437481 -257756183 - MIR3 SINE MIR -50 158 20 2454 97 0 0 chr1 24437738 24438036 -257755628 - AluSx SINE Alu -14 298 1 201 245 0 0 chr1 24438058 24438107 -257755557 - MIR SINE MIR -67 141 93 365 80 0 0 chr1 24438211 24438261 -257755403 - AluSg/x SINE Alu -65 237 188 453 19 0 0 chr1 24438261 24438315 -257755349 + (CA)n Simple_repeat Simple_repeat 1 54 0 366 255 156 14 chr1 24438392 24438533 -257755131 + MIR3 SINE MIR 38 198 -10 317 326 30 21 chr1 24438543 24438712 -257754952 + MIR SINE MIR 14 146 -62 22 0 0 0 chr1 24438737 24438759 -257754905 + AT_rich Low_complexity Low_complexity 1 22 0 2016 146 3 0 chr1 24438766 24439061 -257754603 + AluSx SINE Alu 1 296 -16 22 0 0 0 chr1 24439409 24439431 -257754233 + AT_rich Low_complexity Low_complexity 1 22 0 247 282 51 0 chr1 24439434 24439512 -257754152 + MIR SINE MIR 100 181 -81 2156 113 0 3 chr1 24439637 24439962 -257753702 - AluSq SINE Alu 0 324 1 273 312 18 9 chr1 24439967 24440076 -257753588 - MIR SINE MIR -51 211 102 27 0 0 0 chr1 24440096 24440123 -257753541 + AT_rich Low_complexity Low_complexity 1 27 0 1897 144 27 27 chr1 24440342 24440640 -257753024 + AluJb SINE Alu 1 298 -14 686 240 97 19 chr1 24440647 24440905 -257752759 - L2 LINE L2 -1321 1993 1716 1843 131 61 3 chr1 24440935 24441263 -257752401 - L1MB3 LINE L1 -23 6160 5814 2126 109 39 0 chr1 24441263 24441548 -257752116 + AluSx SINE Alu 1 296 -16 2330 113 7 0 chr1 24444332 24444642 -257749022 - AluSx SINE Alu 0 312 1 635 192 25 123 chr1 24445740 24445834 -257747830 + MER5A DNA MER1_type 1 103 -86 1609 113 35 9 chr1 24445834 24446065 -257747599 + AluSx SINE Alu 55 291 -21 2123 116 3 7 chr1 24446065 24446358 -257747306 + AluY SINE Alu 1 292 -19 635 192 25 123 chr1 24446358 24446465 -257747199 + MER5A DNA MER1_type 101 183 -6 308 28 0 0 chr1 24446497 24446533 -257747131 - U2 snRNA snRNA -152 36 1 392 296 34 55 chr1 24446535 24446870 -257746794 + L2 LINE L2 2686 3023 -249 10191 23 1 209 chr1 24446891 24448641 -257745023 - SVA Other Other 0 1386 1 23 0 0 0 chr1 24448795 24448818 -257744846 + AT_rich Low_complexity Low_complexity 1 23 0 337 240 0 0 chr1 24448904 24448979 -257744685 - MIR SINE MIR -65 197 123 1847 161 35 78 chr1 24449010 24449471 -257744193 + L1MB7 LINE L1 5526 5966 -218 1813 181 10 3 chr1 24449471 24449781 -257743883 + AluJo SINE Alu 1 312 0 2034 63 0 0 chr1 24449788 24450025 -257743639 + AluSx SINE Alu 63 299 -13 1095 160 0 82 chr1 24450027 24450169 -257743495 + L1MB8 LINE L1 4947 5099 -1047 1774 140 7 14 chr1 24450169 24450447 -257743217 - AluJo SINE Alu -1 311 36 1095 160 0 82 chr1 24450447 24450530 -257743134 + L1MB8 LINE L1 5099 5147 -999 2242 91 38 0 chr1 24450530 24450817 -257742847 - AluSc SINE Alu -11 298 1 1095 160 0 82 chr1 24450817 24450872 -257742792 + L1MB8 LINE L1 5147 5205 -941 877 176 0 14 chr1 24450876 24451018 -257742646 - AluJo SINE Alu -172 140 1 549 182 143 26 chr1 24451018 24451172 -257742492 + L1MB8 LINE L1 5908 6079 -99 402 246 203 40 chr1 24451191 24451467 -257742197 + L1M4 LINE L1 3845 4165 -1981 190 273 0 0 chr1 24451527 24451571 -257742093 - L2 LINE L2 -3 3310 3267 2491 65 0 56 chr1 24451683 24452006 -257741658 - AluY SINE Alu -6 305 1 2249 129 0 0 chr1 24452283 24452593 -257741071 - AluSx SINE Alu -2 310 1 196 250 36 0 chr1 24452594 24452650 -257741014 - L2 LINE L2 -13 3300 3243 791 164 22 87 chr1 24452763 24452887 -257740777 - MER5A DNA MER1_type -2 187 77 2517 93 3 0 chr1 24452887 24453199 -257740465 + AluSp SINE Alu 1 313 0 791 164 22 87 chr1 24453199 24453257 -257740407 - MER5A DNA MER1_type -112 77 17 219 231 0 19 chr1 24453307 24453359 -257740305 - L2 LINE L2 -75 3197 3147 1861 157 31 3 chr1 24453428 24453722 -257739942 + AluJb SINE Alu 1 302 -10 388 38 0 0 chr1 24453758 24453811 -257739853 - MADE1 DNA Mariner 0 80 28 598 224 109 12 chr1 24453815 24453980 -257739684 - MIR SINE MIR -79 183 3 1495 113 5 5 chr1 24454218 24454421 -257739243 + AluJb SINE Alu 1 203 -109 306 291 182 0 chr1 24454701 24454811 -257738853 - MIR SINE MIR -60 202 73 243 111 0 0 chr1 24454823 24454859 -257738805 - MER96 DNA MER1_type? -139 36 1 2412 97 3 0 chr1 24455287 24455596 -257738068 - AluSg SINE Alu 0 310 1 2027 150 0 3 chr1 24455598 24455898 -257737766 - AluJo SINE Alu 0 312 14 2070 105 31 14 chr1 24456178 24456464 -257737200 - AluSx SINE Alu -21 291 1 347 315 99 0 chr1 24456595 24456776 -257736888 - MIR SINE MIR -26 236 38 976 161 0 60 chr1 24456805 24456879 -257736785 + MER5A DNA MER1_type 3 80 -109 2319 99 0 10 chr1 24456879 24457182 -257736482 + AluSx SINE Alu 1 300 -12 976 161 0 60 chr1 24457182 24457306 -257736358 + MER5A DNA MER1_type 80 189 0 234 333 67 15 chr1 24457416 24457551 -257736113 - L2 LINE L2 -188 3084 2943 2615 49 0 7 chr1 24457676 24457981 -257735683 - AluY SINE Alu -8 303 1 2197 92 0 55 chr1 24458054 24458381 -257735283 - AluSg1 SINE Alu 0 309 1 623 169 17 102 chr1 24458409 24458586 -257735078 + MLT1D LTR MaLR 5 166 -339 2036 142 0 10 chr1 24458593 24458881 -257734783 + AluSx SINE Alu 1 285 -27 342 0 0 0 chr1 24458883 24458921 -257734743 + (CAT)n Simple_repeat Simple_repeat 2 39 0 1950 150 28 3 chr1 24458925 24459212 -257734452 - AluJb SINE Alu -18 294 1 3059 225 88 51 chr1 24459220 24459600 -257734064 - L2 LINE L2 -245 3068 2704 2111 140 19 7 chr1 24459600 24459908 -257733756 + AluSx SINE Alu 1 312 0 3059 225 88 51 chr1 24459908 24460141 -257733523 - L2 LINE L2 -609 2704 2481 2426 100 0 3 chr1 24460141 24460452 -257733212 + AluSg SINE Alu 1 310 0 3059 225 88 51 chr1 24460452 24461046 -257732618 - L2 LINE L2 -832 2481 1819 692 173 120 0 chr1 24461046 24461179 -257732485 + AluJb SINE Alu 137 285 -27 907 176 0 55 chr1 24461180 24461345 -257732319 - AluJo SINE Alu -66 246 91 3509 118 95 2 chr1 24461530 24462108 -257731556 + MER41B LTR ERV1 3 634 -1 461 291 63 54 chr1 24462448 24462459 -257731205 + MIR SINE MIR 19 28 -234 1700 166 9 69 chr1 24462459 24462601 -257731063 + AluJb SINE Alu 1 150 -162 2329 67 0 14 chr1 24462601 24462908 -257730756 + AluY SINE Alu 4 306 0 1700 166 9 69 chr1 24462908 24463096 -257730568 + AluJb SINE Alu 150 312 0 461 291 63 54 chr1 24463096 24463301 -257730363 + MIR SINE MIR 28 233 -29 198 0 0 0 chr1 24463301 24463323 -257730341 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 478 287 242 29 chr1 24463425 24464052 -257729612 - L2 LINE L2 -219 3053 2231 1125 133 21 11 chr1 24464053 24464241 -257729423 + MLT1D LTR MaLR 1 190 -315 1456 150 0 121 chr1 24464243 24464550 -257729114 + AluJb SINE Alu 33 302 -10 1043 152 47 6 chr1 24464561 24464732 -257728932 + AluJb SINE Alu 132 309 -3 2318 86 30 0 chr1 24464737 24465039 -257728625 + AluSp SINE Alu 1 311 -2 1015 214 87 29 chr1 24465056 24465297 -257728367 + MLT1D LTR MaLR 176 464 -41 1579 69 0 5 chr1 24465297 24465485 -257728179 + AluSx SINE Alu 1 187 -125 1015 214 87 29 chr1 24465485 24465530 -257728134 + MLT1D LTR MaLR 464 505 0 318 315 67 25 chr1 24465550 24465788 -257727876 - L2 LINE L2 -1114 2200 1953 632 202 0 0 chr1 24465788 24465907 -257727757 + FRAM SINE Alu 49 167 -9 2028 155 20 0 chr1 24466020 24466323 -257727341 - AluJb SINE Alu 0 312 4 302 250 90 0 chr1 24466328 24466428 -257727236 - L1ME4a LINE L1 0 6121 6013 189 0 0 0 chr1 24466498 24466519 -257727145 + (TTTTC)n Simple_repeat Simple_repeat 5 25 0 255 306 169 31 chr1 24466536 24466696 -257726968 - MIR SINE MIR -78 184 3 371 270 36 0 chr1 24466901 24467012 -257726652 - MIR SINE MIR -79 183 69 257 276 9 38 chr1 24467107 24467212 -257726452 + (CGGGG)n Simple_repeat Simple_repeat 1 102 0 313 261 13 26 chr1 24467421 24467574 -257726090 + G-rich Low_complexity Low_complexity 2 152 0 21 95 0 0 chr1 24467607 24467670 -257725994 + GC_rich Low_complexity Low_complexity 1 63 0 252 233 120 80 chr1 24468858 24468901 -257724763 + MIR SINE MIR 5 45 -217 2587 49 3 13 chr1 24468901 24469209 -257724455 - AluY SINE Alu -6 305 1 252 233 120 80 chr1 24469209 24469315 -257724349 + MIR SINE MIR 45 160 -102 2049 144 0 0 chr1 24469346 24469631 -257724033 - AluSx SINE Alu -21 291 7 528 256 42 42 chr1 24470657 24470848 -257722816 - MIR3 SINE MIR -2 206 16 1906 145 48 3 chr1 24471694 24471984 -257721680 - AluJb SINE Alu -9 303 1 2377 102 0 6 chr1 24473085 24473398 -257720266 - AluY SINE Alu 0 311 1 2401 93 0 0 chr1 24473402 24473693 -257719971 - AluSq SINE Alu -21 292 2 349 290 22 43 chr1 24473862 24474000 -257719664 - L2 LINE L2 -25 3288 3154 832 213 6 0 chr1 24474000 24474164 -257719500 + FRAM SINE Alu 1 165 -1 228 308 11 22 chr1 24474260 24474351 -257719313 + L2 LINE L2 2170 2259 -1055 1049 76 0 0 chr1 24474475 24474606 -257719058 - AluSg/x SINE Alu -5 307 177 1838 111 0 0 chr1 24474606 24474840 -257718824 + AluSx SINE Alu 47 280 -32 195 358 147 0 chr1 24474877 24474986 -257718678 + L2 LINE L2 3148 3272 0 1127 295 139 23 chr1 24475041 24475499 -257718165 - L2 LINE L2 -344 2970 2567 2308 118 0 6 chr1 24475499 24475813 -257717851 - AluSx SINE Alu 0 312 1 1127 295 139 23 chr1 24475813 24475897 -257717767 - L2 LINE L2 -747 2567 2494 1571 185 72 14 chr1 24475897 24476189 -257717475 - AluJo SINE Alu -3 309 1 1127 295 139 23 chr1 24476189 24476334 -257717330 - L2 LINE L2 -820 2494 2202 593 239 168 63 chr1 24476389 24476859 -257716805 - LTR67 LTR ERVL -1 556 6 913 260 63 48 chr1 24476975 24476994 -257716670 - L2 LINE L2 -1099 2215 2198 2332 93 7 3 chr1 24476994 24477304 -257716360 + AluSx SINE Alu 1 311 -1 913 260 63 48 chr1 24477304 24477619 -257716045 - L2 LINE L2 -1116 2198 1876 2159 92 46 0 chr1 24477621 24477902 -257715762 + AluSx SINE Alu 13 306 -6 364 259 65 41 chr1 24478533 24478703 -257714961 + MER5B DNA MER1_type 5 178 0 561 239 112 43 chr1 24478879 24479108 -257714556 + MIR SINE MIR 9 252 -10 675 167 7 43 chr1 24479403 24479541 -257714123 + FLAM_C SINE Alu 1 133 0 204 265 0 0 chr1 24479562 24479611 -257714053 + MER5B DNA MER1_type 2 50 -128 1647 167 48 0 chr1 24479624 24479935 -257713729 - L1MB7 LINE L1 -17 6167 5842 190 205 0 0 chr1 24479979 24480018 -257713646 - MIR SINE MIR -36 226 188 450 291 42 18 chr1 24480142 24480307 -257713357 - MIR SINE MIR -88 174 6 617 336 90 32 chr1 24480358 24480736 -257712928 - L2 LINE L2 0 3272 2873 443 272 58 0 chr1 24481230 24481403 -257712261 - MIR3 SINE MIR 0 208 26 376 273 78 45 chr1 24481663 24481817 -257711847 - MIR3 SINE MIR -27 181 23 605 272 150 5 chr1 24481997 24482210 -257711454 + MIR SINE MIR 7 250 -12 208 258 30 30 chr1 24482422 24482488 -257711176 + L2 LINE L2 2716 2781 -533 316 116 0 0 chr1 24482491 24482534 -257711130 + MIR SINE MIR 15 57 -205 187 43 0 0 chr1 24482545 24482568 -257711096 + (TTA)n Simple_repeat Simple_repeat 2 180 0 1875 141 3 7 chr1 24482568 24482854 -257710810 - AluJo SINE Alu -25 287 1 2018 113 10 13 chr1 24482985 24483286 -257710378 - AluSg1 SINE Alu -9 300 1 348 314 39 20 chr1 24483683 24483836 -257709828 + MIR SINE MIR 35 190 -72 2241 88 0 10 chr1 24483895 24484202 -257709462 - AluSg1 SINE Alu 0 309 6 303 279 58 0 chr1 24484243 24484329 -257709335 + MIR3 SINE MIR 84 174 -34 311 312 50 7 chr1 24484369 24484510 -257709154 + MER117 DNA MER1_type 1 147 -50 1038 96 0 51 chr1 24484510 24484703 -257708961 + AluY SINE Alu 136 320 0 1992 100 18 4 chr1 24484713 24485014 -257708650 + AluSx SINE Alu 1 305 0 527 286 167 38 chr1 24485529 24485816 -257707848 - L3 LINE CR1 -1 1576 1253 302 240 83 115 chr1 24486024 24486075 -257707589 + MIR SINE MIR 20 71 -191 2057 120 6 19 chr1 24486075 24486391 -257707273 + AluSx SINE Alu 1 312 0 302 240 83 115 chr1 24486391 24486556 -257707108 + MIR SINE MIR 71 229 -33 689 300 126 0 chr1 24486725 24486948 -257706716 - MIR SINE MIR -10 252 2 1017 140 105 0 chr1 24486969 24487140 -257706524 - MER5A DNA MER1_type 0 189 1 1719 141 0 99 chr1 24487197 24487390 -257706274 - AluJo SINE Alu 0 302 154 2069 119 0 0 chr1 24487390 24487683 -257705981 + AluSx SINE Alu 1 293 -19 1719 141 0 99 chr1 24487683 24487823 -257705841 - AluJo SINE Alu -148 154 2 195 271 39 78 chr1 24487926 24487999 -257705665 - MIR SINE MIR -50 212 145 2171 81 7 0 chr1 24487999 24488284 -257705380 + AluSg SINE Alu 21 307 -3 195 271 39 78 chr1 24488284 24488339 -257705325 - MIR SINE MIR -117 145 89 314 229 143 19 chr1 24488666 24488771 -257704893 + L2 LINE L2 3155 3272 0 199 338 113 63 chr1 24488941 24489101 -257704563 + L2 LINE L2 3039 3214 -58 1887 95 46 7 chr1 24489101 24489386 -257704278 - AluSc SINE Alu -13 296 1 199 338 113 63 chr1 24489386 24489447 -257704217 + L2 LINE L2 3214 3271 -1 2551 39 0 3 chr1 24489553 24489859 -257703805 + AluY SINE Alu 1 305 -6 1444 205 56 133 chr1 24489894 24490176 -257703488 - MLT1J LTR MaLR -2 509 207 1662 140 32 36 chr1 24490176 24490484 -257703180 - AluJo SINE Alu -1 311 5 1444 205 56 133 chr1 24490484 24490510 -257703154 - MLT1J LTR MaLR -304 207 181 5086 101 54 67 chr1 24490510 24491339 -257702325 - L1MC1 LINE L1 -5 6328 5510 2245 102 0 6 chr1 24491339 24491652 -257702012 - AluSx SINE Alu -1 311 1 5086 101 54 67 chr1 24491652 24491716 -257701948 - L1MC1 LINE L1 -823 5510 5447 1444 205 56 133 chr1 24491716 24491741 -257701923 - MLT1J LTR MaLR -330 181 156 425 173 0 12 chr1 24491741 24491822 -257701842 - L1MA10 LINE L1 -1 6333 6254 1444 205 56 133 chr1 24491822 24492037 -257701627 - MLT1J LTR MaLR -355 156 1 259 204 0 20 chr1 24492583 24492632 -257701032 - L2 LINE L2 -2 3270 3223 2123 104 3 3 chr1 24492684 24492982 -257700682 - AluSx SINE Alu -8 304 7 1498 164 87 3 chr1 24493249 24493536 -257700128 - AluJb SINE Alu -1 311 1 888 140 0 22 chr1 24493542 24493678 -257699986 - FLAM_C SINE Alu 0 133 1 457 274 34 94 chr1 24493910 24494066 -257699598 - MIR SINE MIR -12 250 111 2010 105 18 3 chr1 24494066 24494351 -257699313 + AluSq SINE Alu 3 291 -22 457 274 34 94 chr1 24494351 24494428 -257699236 - MIR SINE MIR -151 111 31 213 295 26 0 chr1 24494680 24494758 -257698906 + MIR SINE MIR 58 137 -71 521 278 61 28 chr1 24495211 24495391 -257698273 - MIR SINE MIR -39 223 38 216 271 0 0 chr1 24496333 24496381 -257697283 + (CCA)n Simple_repeat Simple_repeat 2 49 0 654 246 121 5 chr1 24496582 24496797 -257696867 - MIR SINE MIR -21 241 2 632 267 181 0 chr1 24496914 24497135 -257696529 + MIR SINE MIR 2 262 0 275 26 26 0 chr1 24497138 24497176 -257696488 + MADE1 DNA Mariner 42 80 0 1409 201 10 10 chr1 24497259 24497392 -257696272 + AluJb SINE Alu 1 133 -179 2200 94 7 3 chr1 24497392 24497691 -257695973 + AluSx SINE Alu 2 301 -11 1409 201 10 10 chr1 24497691 24497850 -257695814 + AluJb SINE Alu 132 293 -19 296 280 119 8 chr1 24497909 24498027 -257695637 - L2 LINE L2 -5 3267 3137 197 309 0 0 chr1 24498157 24498212 -257695452 - L2 LINE L2 -213 3059 3005 515 165 17 43 chr1 24498224 24498339 -257695325 - MLT1K LTR MaLR -8 580 469 496 266 26 43 chr1 24499389 24499571 -257694093 - MIR SINE MIR -62 146 18 226 250 36 0 chr1 24499855 24499911 -257693753 + MIR SINE MIR 80 137 -125 457 191 96 59 chr1 24500704 24500840 -257692824 - MIR SINE MIR -72 190 50 295 238 57 9 chr1 24501412 24501517 -257692147 - L1ME4a LINE L1 -182 5939 5830 267 303 67 11 chr1 24502109 24502198 -257691466 - MIR SINE MIR -98 110 17 302 275 88 11 chr1 24502531 24502622 -257691042 + MIR SINE MIR 120 217 -45 225 119 24 24 chr1 24502622 24502664 -257691000 - L2 LINE L2 -5 3308 3267 590 220 150 6 chr1 24502931 24503104 -257690560 + MIR SINE MIR 29 226 -36 800 153 107 149 chr1 24503125 24503406 -257690258 + AluSg1 SINE Alu 21 289 -20 324 294 73 7 chr1 24503423 24503559 -257690105 - MIR SINE MIR 0 262 118 241 263 53 26 chr1 24504224 24504300 -257689364 - MIR SINE MIR -1 261 184 1955 168 63 113 chr1 24504316 24504671 -257688993 - MER44D DNA MER2_type -1882 605 223 2159 117 12 24 chr1 24504671 24505012 -257688652 + MER1B DNA MER1_type 1 337 0 1955 168 63 113 chr1 24505012 24505132 -257688532 - MER44D DNA MER2_type -2264 223 99 2007 123 6 19 chr1 24505132 24505448 -257688216 + AluSx SINE Alu 1 312 0 299 236 106 62 chr1 24505452 24505613 -257688051 + MIR SINE MIR 62 229 -33 689 300 126 0 chr1 24505782 24506005 -257687659 - MIR SINE MIR -10 252 2 1017 140 105 0 chr1 24506026 24506197 -257687467 - MER5A DNA MER1_type 0 189 1 1719 141 0 99 chr1 24506254 24506447 -257687217 - AluJo SINE Alu 0 302 154 2069 119 0 0 chr1 24506447 24506740 -257686924 + AluSx SINE Alu 1 293 -19 1719 141 0 99 chr1 24506740 24506880 -257686784 - AluJo SINE Alu -148 154 2 2057 110 20 0 chr1 24507608 24507909 -257685755 + AluSq SINE Alu 1 307 -6 2061 104 7 0 chr1 24508013 24508310 -257685354 + AluSq SINE Alu 1 299 -14 246 75 0 57 chr1 24508319 24508372 -257685292 + (GAAAA)n Simple_repeat Simple_repeat 5 54 0 446 178 40 30 chr1 24508374 24508475 -257685189 - MER69A DNA AcHobo -43 134 33 624 96 0 184 chr1 24508476 24508612 -257685052 - FLAM_C SINE Alu -13 130 20 272 119 24 0 chr1 24508617 24508659 -257685005 - MER69A DNA AcHobo -133 44 2 758 158 96 6 chr1 24508669 24508846 -257684818 - Charlie4 DNA MER1_type -6 1955 1763 2266 93 0 3 chr1 24508851 24509162 -257684502 - AluY SINE Alu -1 310 1 2393 56 0 3 chr1 24509541 24509844 -257683820 - AluY SINE Alu -9 302 1 220 250 0 0 chr1 24509851 24509903 -257683761 - MIR3 SINE MIR -6 202 151 2920 106 2 54 chr1 24509992 24510436 -257683228 + MER1A DNA MER1_type 1 421 -108 2377 14 0 11 chr1 24510462 24510747 -257682917 + AluYa5 SINE Alu 1 282 -29 596 101 0 0 chr1 24510847 24510926 -257682738 - AluS SINE Alu -233 80 2 590 227 84 92 chr1 24510940 24511183 -257682481 - MER21B LTR ERV1 -398 465 176 764 170 0 15 chr1 24511183 24511318 -257682346 - FLAM_C SINE Alu 0 133 1 590 227 84 92 chr1 24511318 24511493 -257682171 - MER21B LTR ERV1 -687 176 1 4207 84 11 6 chr1 24511523 24512072 -257681592 + MER41A LTR ERV1 3 554 0 370 164 0 45 chr1 24512169 24512236 -257681428 - AluSc SINE Alu -10 289 226 725 185 7 7 chr1 24512595 24512730 -257680934 + AluJb SINE Alu 2 136 -176 1591 176 22 26 chr1 24513193 24513506 -257680158 - AluJb SINE Alu 0 312 1 1893 91 16 52 chr1 24513515 24513824 -257679840 - AluSp SINE Alu -15 298 1 1915 136 3 3 chr1 24513830 24514131 -257679533 - AluSg SINE Alu -9 301 1 29 0 0 0 chr1 24515025 24515054 -257678610 + AT_rich Low_complexity Low_complexity 1 29 0 778 268 162 22 chr1 24515092 24515263 -257678401 + L1MC4 LINE L1 7177 7323 -719 1949 137 0 0 chr1 24515263 24515582 -257678082 + AluSx SINE Alu 1 319 0 778 268 162 22 chr1 24515582 24515767 -257677897 + L1MC4 LINE L1 7323 7584 -458 571 207 193 7 chr1 24515808 24515953 -257677711 + MER58B DNA MER1_type 169 340 -1 1648 178 0 3 chr1 24515976 24516274 -257677390 + AluJo SINE Alu 1 297 -15 1771 154 0 13 chr1 24516274 24516573 -257677091 + AluJb SINE Alu 1 295 -17 1202 94 29 6 chr1 24516598 24516769 -257676895 - L1PA11 LINE L1 0 6174 6000 675 155 75 18 chr1 24516880 24517072 -257676592 - MER46C DNA MER2_type -4 334 92 24 0 0 0 chr1 24517513 24517537 -257676127 + AT_rich Low_complexity Low_complexity 1 24 0 252 387 0 21 chr1 24517698 24517791 -257675873 + MIR3 SINE MIR 2 92 -116 474 83 0 0 chr1 24518002 24518062 -257675602 + Alu SINE Alu 2 61 -249 441 0 0 0 chr1 24518072 24518121 -257675543 + (CA)n Simple_repeat Simple_repeat 2 50 0 379 333 40 0 chr1 24518280 24518406 -257675258 - MIR3 SINE MIR -35 173 43 1168 45 0 57 chr1 24518408 24518565 -257675099 + AluY SINE Alu 4 151 -160 1146 206 183 3 chr1 24518665 24518976 -257674688 + L1ME LINE L1 5395 5761 -405 327 299 91 13 chr1 24518971 24519125 -257674539 + L1MC3 LINE L1 6053 6218 -1567 * 2118 102 17 0 chr1 24519129 24519422 -257674242 + AluSx SINE Alu 1 298 -14 3132 140 65 57 chr1 24519605 24519846 -257673818 + L1MB7 LINE L1 5192 5430 -754 2123 119 0 0 chr1 24519846 24520140 -257673524 + AluSq SINE Alu 1 294 -19 3132 140 65 57 chr1 24520140 24520468 -257673196 + L1MB7 LINE L1 5430 5772 -412 1954 126 3 14 chr1 24520468 24520761 -257672903 - AluSx SINE Alu -22 290 1 3132 140 65 57 chr1 24520761 24520963 -257672701 + L1MB7 LINE L1 5772 5971 -213 180 143 54 0 chr1 24521069 24521125 -257672539 + (TA)n Simple_repeat Simple_repeat 2 60 0 1862 140 84 45 chr1 24521401 24521689 -257671975 + Tigger2a DNA MER2_type 2 308 -2400 1574 197 0 7 chr1 24521689 24521979 -257671685 + AluJo SINE Alu 12 299 -13 1862 140 84 45 chr1 24521979 24522046 -257671618 + Tigger2a DNA MER2_type 308 371 -63 871 200 12 0 chr1 24523696 24523856 -257669808 - AluJo/FRAM SINE Alu -4 298 137 1342 85 11 5 chr1 24523859 24524048 -257669616 - AluSp SINE Alu -14 299 110 643 317 93 8 chr1 24524148 24524394 -257669270 + L2 LINE L2 3036 3302 -11 2218 102 0 3 chr1 24525491 24525796 -257667868 - AluSq SINE Alu -8 305 2 285 278 0 14 chr1 24525808 24525880 -257667784 - MIR SINE MIR -15 247 177 464 207 168 50 chr1 24525882 24526061 -257667603 - MIR SINE MIR -6 256 57 1133 397 7 36 chr1 24526148 24526450 -257667214 - AluY SINE Alu -8 293 1 1617 120 112 8 chr1 24526555 24526822 -257666842 - AluSg SINE Alu -13 297 3 2159 110 7 3 chr1 24526831 24527139 -257666525 - AluSg SINE Alu -1 309 1 1406 161 3 93 chr1 24527484 24527689 -257665975 - AluJo SINE Alu -19 293 71 270 0 0 0 chr1 24527689 24527719 -257665945 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1985 114 0 0 chr1 24527719 24527999 -257665665 - AluSx SINE Alu -31 281 2 1406 161 3 93 chr1 24527999 24528114 -257665550 - AluJo SINE Alu -239 73 1 1591 170 10 7 chr1 24528164 24528458 -257665206 - AluJb SINE Alu -17 295 1 340 172 0 23 chr1 24528576 24528651 -257665013 - Alu SINE Alu -250 52 4 291 275 104 44 chr1 24528777 24528959 -257664705 - MARNA DNA Mariner -287 299 107 2243 86 10 0 chr1 24529276 24529578 -257664086 - AluSx SINE Alu -7 305 1 845 122 115 27 chr1 24529866 24530014 -257663650 - AluSq SINE Alu -22 291 131 408 235 115 77 chr1 24530060 24530284 -257663380 - MIR SINE MIR -2 260 40 893 51 0 102 chr1 24530850 24530987 -257662677 + AluY SINE Alu 27 149 -162 11437 15 3 2 chr1 24532180 24533888 -257659776 - L1P1 LINE L1 -608 5547 3839 957 81 22 7 chr1 24533888 24534024 -257659640 - AluSq SINE Alu -175 138 1 1769 232 45 13 chr1 24534024 24534575 -257659089 - L1M4 LINE L1 -3173 2973 2405 410 248 110 28 chr1 24534611 24534756 -257658908 + L1ME2 LINE L1 3325 3481 -2665 942 138 0 0 chr1 24534856 24534994 -257658670 - AluSq SINE Alu -175 138 1 1567 216 35 38 chr1 24534996 24535449 -257658215 + L1ME2 LINE L1 5578 6029 -135 233 180 20 0 chr1 24535500 24535550 -257658114 + LTR66 LTR ERVL 395 445 -165 334 183 0 0 chr1 24535550 24535621 -257658043 + L1ME2 LINE L1 6093 6163 -1 1384 177 51 4 chr1 24535655 24535934 -257657730 + AluJo SINE Alu 17 307 0 2757 107 90 2 chr1 24536220 24536632 -257657032 - MER83 LTR ERV1 0 448 1 2021 118 10 3 chr1 24536641 24536930 -257656734 + MSTC LTR MaLR 138 428 0 837 201 32 123 chr1 24537095 24537190 -257656474 + L1MC5 LINE L1 7072 7174 -787 1829 155 3 3 chr1 24537190 24537480 -257656184 + AluJb SINE Alu 1 290 -22 837 201 32 123 chr1 24537480 24537882 -257655782 + L1MC5 LINE L1 7174 7524 -437 1822 236 86 6 chr1 24537882 24538361 -257655303 + LTR40a LTR ERVL 1 517 -2 332 217 0 0 chr1 24538375 24538435 -257655229 + HERVL40 LTR ERVL 17 76 -5454 1915 175 37 52 chr1 24538466 24538924 -257654740 + MLT1D LTR MaLR 21 471 -34 1880 125 13 10 chr1 24539055 24539360 -257654304 - AluSx SINE Alu -6 306 1 410 231 54 75 chr1 24539365 24539512 -257654152 - MIR3 SINE MIR -62 146 3 241 307 0 27 chr1 24539513 24539588 -257654076 + MIR SINE MIR 34 106 -102 210 71 0 0 chr1 24539656 24539684 -257653980 + (T)n Simple_repeat Simple_repeat 1 28 0 182 36 0 36 chr1 24540043 24540071 -257653593 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 1284 195 0 16 chr1 24540086 24540343 -257653321 - AluJb SINE Alu -59 253 1 636 157 0 0 chr1 24540364 24540477 -257653187 - L1ME1 LINE L1 -5 6161 6063 1877 125 10 17 chr1 24541229 24541524 -257652140 - AluSx SINE Alu -19 293 1 486 247 21 10 chr1 24541524 24541669 -257651995 + MIR SINE MIR 102 247 -15 2277 81 0 13 chr1 24541896 24542203 -257651461 - AluY SINE Alu -7 304 2 1494 165 120 0 chr1 24542204 24542470 -257651194 - AluJo SINE Alu -4 298 1 328 302 6 76 chr1 24542580 24542631 -257651033 - MIR SINE MIR -16 246 193 2349 96 3 0 chr1 24542631 24542943 -257650721 - AluSp SINE Alu 0 313 1 328 302 6 76 chr1 24542943 24543063 -257650601 - MIR SINE MIR -69 193 87 2023 87 0 22 chr1 24543219 24543495 -257650169 + AluSg SINE Alu 37 306 -4 2245 97 0 0 chr1 24543712 24544010 -257649654 + AluSx SINE Alu 1 298 -14 498 296 24 0 chr1 24544116 24544241 -257649423 - MIR SINE MIR -132 130 3 195 333 0 43 chr1 24544582 24544651 -257649013 - L2 LINE L2 -15 3298 3233 717 253 164 68 chr1 24544670 24545053 -257648611 - MLT1J1 LTR MaLR -13 433 14 2110 62 0 0 chr1 24545284 24545543 -257648121 + AluSq SINE Alu 39 297 -16 709 185 0 0 chr1 24546272 24546391 -257647273 + FLAM_C SINE Alu 1 119 -14 31 0 0 0 chr1 24546394 24546425 -257647239 + AT_rich Low_complexity Low_complexity 1 31 0 200 214 43 100 chr1 24546725 24546795 -257646869 - MIR3 SINE MIR -13 195 130 1341 186 13 42 chr1 24547041 24547348 -257646316 - AluSx SINE Alu -11 301 4 203 333 26 13 chr1 24547487 24547565 -257646099 - MIR SINE MIR -108 154 76 234 0 0 0 chr1 24547612 24547638 -257646026 + (A)n Simple_repeat Simple_repeat 1 26 0 2349 48 0 3 chr1 24548152 24548447 -257645217 + AluY SINE Alu 1 294 -17 514 251 174 18 chr1 24548510 24548729 -257644935 + MIR SINE MIR 10 262 0 21 0 0 0 chr1 24548733 24548754 -257644910 + AT_rich Low_complexity Low_complexity 1 21 0 1761 81 116 8 chr1 24548755 24549013 -257644651 - AluSg SINE Alu -24 286 1 293 231 15 15 chr1 24549185 24549250 -257644414 + MIR SINE MIR 82 146 -62 848 160 51 0 chr1 24549288 24549444 -257644220 - FRAM SINE Alu -13 163 1 458 263 172 15 chr1 24549707 24549905 -257643759 - MIR SINE MIR -13 249 21 548 263 133 26 chr1 24550794 24550843 -257642821 + L2 LINE L2 1892 1934 -1380 1922 153 0 0 chr1 24550843 24551150 -257642514 - AluJb SINE Alu -5 307 1 548 263 133 26 chr1 24551150 24551439 -257642225 + L2 LINE L2 1934 2266 -1048 329 266 127 66 chr1 24551467 24551726 -257641938 - L2 LINE L2 -41 3272 2998 * 446 200 36 36 chr1 24551711 24551821 -257641843 - L2 LINE L2 -463 2851 2742 216 0 0 0 chr1 24551835 24551859 -257641805 + (TGAA)n Simple_repeat Simple_repeat 4 27 0 1795 157 0 0 chr1 24551860 24552140 -257641524 - AluJb SINE Alu -32 280 1 245 249 176 112 chr1 24552215 24552427 -257641237 - L2 LINE L2 -31 3241 3044 730 197 8 0 chr1 24552427 24552559 -257641105 + FLAM_C SINE Alu 1 133 0 245 249 176 112 chr1 24552559 24552720 -257640944 - L2 LINE L2 -228 3044 2844 1818 99 11 4 chr1 24552782 24553044 -257640620 - AluSc SINE Alu -7 302 39 2053 125 3 3 chr1 24553159 24553456 -257640208 + AluSx SINE Alu 1 297 -15 1516 181 10 20 chr1 24554472 24554775 -257638889 + AluJo SINE Alu 1 300 -12 423 0 0 0 chr1 24554777 24554824 -257638840 + (CATA)n Simple_repeat Simple_repeat 2 48 0 430 214 75 107 chr1 24555176 24555363 -257638301 - MIR SINE MIR -81 181 1 567 217 112 6 chr1 24555797 24555958 -257637706 + MIR3 SINE MIR 16 193 -15 307 237 263 9 chr1 24556022 24556056 -257637608 + MER5A DNA MER1_type 41 65 -124 1894 152 20 0 chr1 24556056 24556353 -257637311 + AluSx SINE Alu 1 303 -9 307 237 263 9 chr1 24556353 24556432 -257637232 + MER5A DNA MER1_type 65 183 -6 223 219 0 0 chr1 24556530 24556571 -257637093 + L2 LINE L2 3225 3265 -7 866 235 55 42 chr1 24556639 24556877 -257636787 + MIR SINE MIR 22 262 0 808 162 162 60 chr1 24557040 24557134 -257636530 - MER33 DNA MER1_type -2261 324 241 2113 97 7 13 chr1 24557134 24557434 -257636230 + AluSx SINE Alu 1 298 -14 808 162 162 60 chr1 24557434 24557623 -257636041 - MER33 DNA MER1_type -2344 241 12 342 202 0 67 chr1 24557632 24557736 -257635928 + MIR SINE MIR 49 145 -117 474 18 0 0 chr1 24558055 24558110 -257635554 + (TG)n Simple_repeat Simple_repeat 2 56 0 287 233 182 4 chr1 24558198 24558327 -257635337 - MIR SINE MIR -61 147 16 810 257 106 18 chr1 24558384 24558610 -257635054 + MIR SINE MIR 16 261 -1 203 360 97 57 chr1 24558589 24558764 -257634900 - L2 LINE L2 -10 3262 3081 * 1125 168 0 0 chr1 24558831 24559004 -257634660 + FAM SINE Alu 1 173 -2 2143 88 17 0 chr1 24559258 24559554 -257634110 - AluSp SINE Alu -12 301 1 2092 119 0 0 chr1 24559582 24559877 -257633787 - AluJb SINE Alu -17 295 1 1475 147 122 4 chr1 24560295 24560574 -257633090 - AluJo SINE Alu 0 312 1 233 215 77 0 chr1 24560759 24560824 -257632840 - MIR SINE MIR -107 155 86 1889 153 0 3 chr1 24560975 24561270 -257632394 - AluJb SINE Alu -9 303 10 2168 97 17 0 chr1 24562124 24562424 -257631240 + AluSc SINE Alu 1 305 -4 22 0 0 0 chr1 24562571 24562593 -257631071 + AT_rich Low_complexity Low_complexity 1 22 0 180 77 0 0 chr1 24563971 24563997 -257629667 + (TAA)n Simple_repeat Simple_repeat 2 27 0 2117 103 7 0 chr1 24565009 24565299 -257628365 - AluSg SINE Alu -17 293 2 1630 147 3 43 chr1 24565398 24565698 -257627966 - AluJo SINE Alu -10 302 15 2140 101 10 0 chr1 24565734 24566032 -257627632 + AluSp SINE Alu 1 301 -12 334 294 121 16 chr1 24566195 24566387 -257627277 - MIR SINE MIR -1 261 51 2082 93 31 0 chr1 24567020 24567310 -257626354 + AluSx SINE Alu 1 299 -13 831 143 8 15 chr1 24567326 24567459 -257626205 + FLAM_C SINE Alu 1 132 -1 817 222 21 16 chr1 24567561 24567750 -257625914 + AluJo SINE Alu 39 228 -84 1726 140 16 32 chr1 24567944 24568252 -257625412 - AluJb SINE Alu -9 303 1 752 245 55 19 chr1 24568414 24568520 -257625144 - MIR SINE MIR 0 262 161 2130 105 0 10 chr1 24568520 24568825 -257624839 - AluSq SINE Alu -11 302 1 752 245 55 19 chr1 24568825 24568937 -257624727 - MIR SINE MIR -101 161 37 2062 84 47 0 chr1 24569093 24569368 -257624296 - AluSc SINE Alu -21 288 1 486 222 194 7 chr1 24569425 24569569 -257624095 + MIR SINE MIR 22 192 -70 1712 139 14 11 chr1 24569577 24569858 -257623806 + AluJb SINE Alu 9 290 -22 2295 60 0 0 chr1 24569869 24570182 -257623482 + AluY SINE Alu 1 313 0 2174 111 0 3 chr1 24570212 24570519 -257623145 + AluSx SINE Alu 1 306 -6 795 103 0 52 chr1 24570555 24570691 -257622973 + FLAM_C SINE Alu 15 143 0 206 273 78 52 chr1 24570691 24570768 -257622896 + MIR SINE MIR 184 262 0 255 251 96 96 chr1 24571133 24571290 -257622374 - MIR SINE MIR -58 150 18 1475 190 18 3 chr1 24571797 24572081 -257621583 + AluJb SINE Alu 21 308 -4 23 0 0 0 chr1 24572081 24572104 -257621560 + AT_rich Low_complexity Low_complexity 1 23 0 2274 65 38 0 chr1 24572667 24572958 -257620706 + AluSc SINE Alu 1 302 -7 192 408 51 25 chr1 24573409 24573566 -257620098 - L2 LINE L2 -2942 372 212 180 291 35 35 chr1 24573720 24573806 -257619858 - MIR SINE MIR -68 140 55 512 355 83 25 chr1 24573913 24574189 -257619475 - L3 LINE CR1 -299 1278 987 373 242 32 0 chr1 24574198 24574293 -257619371 - L2 LINE L2 -23 3290 3193 319 214 54 54 chr1 24574334 24574381 -257619283 - MIR3 SINE MIR -8 200 154 2129 103 3 0 chr1 24574381 24574673 -257618991 - AluSx SINE Alu -19 293 1 319 214 54 54 chr1 24574673 24574737 -257618927 - MIR3 SINE MIR -53 155 89 1419 149 0 0 chr1 24575040 24575261 -257618403 + AluJb SINE Alu 1 221 -91 197 62 0 31 chr1 24575286 24575318 -257618346 + (CATATA)n Simple_repeat Simple_repeat 2 32 0 192 326 35 0 chr1 24575347 24575433 -257618231 + MIR SINE MIR 3 91 -171 223 326 89 48 chr1 24575720 24575989 -257617675 - L2 LINE L2 -364 2950 2665 2074 128 0 0 chr1 24575989 24576293 -257617371 + AluSx SINE Alu 1 304 -8 223 326 89 48 chr1 24576293 24576336 -257617328 - L2 LINE L2 -649 2665 2625 892 114 8 0 chr1 24576722 24576853 -257616811 - AluSq/x SINE Alu -180 132 1 347 292 80 29 chr1 24577096 24577233 -257616431 - MIR SINE MIR -33 229 86 261 0 0 0 chr1 24577249 24577278 -257616386 + (CAA)n Simple_repeat Simple_repeat 2 30 0 586 269 86 25 chr1 24577299 24577496 -257616168 - MIR SINE MIR -26 236 28 236 272 105 70 chr1 24577507 24577545 -257616119 + MIR SINE MIR 112 147 -115 1993 144 0 0 chr1 24577545 24577837 -257615827 + AluJb SINE Alu 1 292 -20 236 272 105 70 chr1 24577837 24577912 -257615752 + MIR SINE MIR 147 229 -33 1288 163 31 56 chr1 24578458 24578778 -257614886 + AluJo SINE Alu 1 312 0 284 271 42 31 chr1 24578909 24579005 -257614659 - MIR3 SINE MIR -105 103 7 484 287 76 92 chr1 24579048 24579575 -257614089 - L2 LINE L2 -46 3226 2688 1995 77 42 11 chr1 24579575 24579861 -257613803 + AluY SINE Alu 1 295 -16 484 287 76 92 chr1 24579861 24579988 -257613676 - L2 LINE L2 -584 2688 2560 2077 98 14 0 chr1 24580065 24580360 -257613304 + AluSq SINE Alu 1 299 -14 1138 216 151 65 chr1 24580386 24580508 -257613156 - MLT1H LTR MaLR -2 547 437 3378 115 12 4 chr1 24580508 24581014 -257612650 - L1PB1 LINE L1 -2 6149 5640 1138 216 151 65 chr1 24581014 24581322 -257612342 - MLT1H LTR MaLR -112 437 80 217 191 24 0 chr1 24581370 24581412 -257612252 + MIR SINE MIR 72 114 -94 220 298 0 0 chr1 24581421 24581478 -257612186 - MIR SINE MIR -87 175 119 2401 48 3 3 chr1 24581481 24581775 -257611889 + AluY SINE Alu 1 294 -17 916 95 8 0 chr1 24581775 24581901 -257611763 - THE1B LTR MaLR -40 324 198 808 148 15 30 chr1 24581907 24582042 -257611622 - FLAM_C SINE Alu -9 134 2 657 207 47 77 chr1 24582043 24582214 -257611450 - L1ME LINE L1 -404 5766 5601 1766 172 10 0 chr1 24582231 24582528 -257611136 - AluJo SINE Alu -12 300 1 1945 94 56 0 chr1 24582707 24582994 -257610670 + AluSx SINE Alu 1 303 -9 286 209 88 22 chr1 24583011 24583102 -257610562 - MIR SINE MIR -59 203 107 1940 132 14 0 chr1 24583513 24583807 -257609857 + AluSx SINE Alu 13 323 0 186 0 40 0 chr1 24583807 24583832 -257609832 + (CAA)n Simple_repeat Simple_repeat 2 180 0 403 239 105 35 chr1 24583844 24584052 -257609612 - MIR SINE MIR 0 262 38 1848 158 3 19 chr1 24584053 24584364 -257609300 + AluJb SINE Alu 1 306 -6 349 240 48 40 chr1 24584736 24584861 -257608803 - MLT1K LTR MaLR -308 280 155 434 181 0 0 chr1 24585235 24585307 -257608357 + AluJ/FLAM SINE Alu 4 75 -237 3393 77 21 10 chr1 24585788 24586268 -257607396 + L1MA1 LINE L1 5660 6144 -158 2421 77 0 0 chr1 24586274 24586561 -257607103 - AluSg1 SINE Alu -22 287 1 24 0 0 0 chr1 24586561 24586585 -257607079 + AT_rich Low_complexity Low_complexity 1 24 0 270 270 20 60 chr1 24586690 24586790 -257606874 + L2 LINE L2 3173 3268 -45 1368 49 71 5 chr1 24587394 24587578 -257606086 - MLT2A2 LTR ERVL 0 453 258 307 197 16 0 chr1 24587679 24587740 -257605924 + MER21B LTR ERV1 369 430 -433 260 309 12 0 chr1 24587781 24587865 -257605799 + MER21B LTR ERV1 25 109 -754 1535 185 130 5 chr1 24587866 24588250 -257605414 + MER21B LTR ERV1 431 862 -1 398 179 0 0 chr1 24588256 24588323 -257605341 - LTR40a LTR ERVL -449 70 4 912 192 53 107 chr1 24588325 24588606 -257605058 - HERVL40 LTR ERVL -3 5527 5262 731 302 71 44 chr1 24588566 24588976 -257604688 - MER89-int LTR ERV1 -298 6503 6083 * 2275 81 32 16 chr1 24589131 24589439 -257604225 + AluSq SINE Alu 1 313 0 1787 237 89 18 chr1 24589584 24590098 -257603566 - MER92C LTR ERV1 -3 551 1 827 329 19 24 chr1 24590386 24590797 -257602867 - MER92C-int LTR ERV1 -248 6553 6145 324 189 54 0 chr1 24590806 24590880 -257602784 - HERVL40 LTR ERVL -1284 4246 4169 235 296 148 9 chr1 24591057 24591165 -257602499 + MIR SINE MIR 28 150 -112 279 0 0 0 chr1 24591300 24591331 -257602333 + (TGAA)n Simple_repeat Simple_repeat 2 32 0 2526 143 71 69 chr1 24591736 24592255 -257601409 + MLT2B1 LTR ERVL 1 520 0 219 207 35 0 chr1 24592588 24592604 -257601060 + A-rich Low_complexity Low_complexity 5 19 -45 1913 162 3 10 chr1 24592604 24592918 -257600746 + AluSx SINE Alu 1 312 0 219 207 35 0 chr1 24592918 24592959 -257600705 + A-rich Low_complexity Low_complexity 19 64 0 1884 153 0 10 chr1 24592977 24593144 -257600520 - AluJo SINE Alu -7 305 138 2202 90 38 0 chr1 24593144 24593433 -257600231 + AluSg SINE Alu 9 308 -2 2092 133 0 3 chr1 24593442 24593750 -257599914 + AluSx SINE Alu 1 307 -5 1884 153 0 10 chr1 24593750 24593880 -257599784 - AluJo SINE Alu -182 130 1 696 195 85 14 chr1 24594130 24594311 -257599353 - MIR SINE MIR -28 234 41 189 0 0 0 chr1 24595139 24595160 -257598504 + (TA)n Simple_repeat Simple_repeat 1 21 0 1784 130 10 37 chr1 24595160 24595459 -257598205 - AluJb SINE Alu -21 291 1 2369 109 0 0 chr1 24595491 24595804 -257597860 + AluSq SINE Alu 1 313 0 284 294 56 16 chr1 24595834 24595960 -257597704 - MIR SINE MIR -27 235 105 1153 201 73 7 chr1 24596337 24596611 -257597053 - L1M4 LINE L1 -1239 4907 4616 520 236 175 13 chr1 24596619 24596847 -257596817 + L1M4 LINE L1 2562 2829 -3317 24 0 0 0 chr1 24597024 24597048 -257596616 + AT_rich Low_complexity Low_complexity 1 24 0 2001 163 46 107 chr1 24597427 24597924 -257595740 + MLT1C LTR MaLR 1 467 0 2163 150 18 14 chr1 24597924 24598399 -257595265 + MLT1C-int LTR MaLR 1 590 -781 185 79 0 53 chr1 24599132 24599170 -257594494 + MIR SINE MIR 20 55 -153 1743 166 15 0 chr1 24599258 24599529 -257594135 + AluJo SINE Alu 2 276 -36 4725 104 41 38 chr1 24599532 24600680 -257592984 + MER11A LTR ERVK 1 1266 0 199 109 43 0 chr1 24600694 24600723 -257592941 + (TAA)n Simple_repeat Simple_repeat 2 35 -14 1823 171 0 3 chr1 24600723 24601009 -257592655 + AluSx SINE Alu 1 285 -27 199 109 43 0 chr1 24601009 24601025 -257592639 + (TAA)n Simple_repeat Simple_repeat 35 49 0 598 256 134 0 chr1 24601035 24601207 -257592457 - MIR SINE MIR -48 214 20 249 296 98 23 chr1 24601194 24601326 -257592338 + MIR3 SINE MIR 58 199 -9 * 386 241 131 7 chr1 24601560 24601697 -257591967 + MIR SINE MIR 74 227 -35 276 100 0 0 chr1 24601698 24601738 -257591926 + (CA)n Simple_repeat Simple_repeat 1 40 0 2110 133 3 3 chr1 24601740 24602049 -257591615 + AluSx SINE Alu 1 309 -3 339 25 0 0 chr1 24602467 24602507 -257591157 + (TCCA)n Simple_repeat Simple_repeat 2 41 0 339 260 77 0 chr1 24602512 24602616 -257591048 - L2 LINE L2 -25 3247 3136 599 295 0 30 chr1 24602679 24602879 -257590785 - MIR SINE MIR -21 241 48 366 296 64 61 chr1 24603266 24603739 -257589925 + L2 LINE L2 2711 3183 -89 2716 39 0 0 chr1 24603919 24604229 -257589435 - AluYa8 SINE Alu 0 310 1 486 166 93 58 chr1 24604915 24605003 -257588661 + L1M4 LINE L1 2351 2448 -3698 896 125 0 0 chr1 24605003 24605172 -257588492 + FLAM_C SINE Alu 1 169 0 486 166 93 58 chr1 24605172 24605221 -257588443 + L1M4 LINE L1 2448 2494 -3652 1353 96 6 0 chr1 24605242 24605420 -257588244 + AluY SINE Alu 1 179 -132 1112 158 8 0 chr1 24605520 24608562 -257585102 - ALR/Alpha Satellite centromeric 0 3065 1 1164 156 8 1 chr1 24608578 24622549 -257571115 - ALR/Alpha Satellite centromeric 0 14079 1 1563 110 4 13 chr1 24622549 24622777 -257570887 + AluSg/x SINE Alu 80 305 -4 1415 205 51 63 chr1 24622777 24623107 -257570557 - MLT1D LTR MaLR -95 410 78 504 81 0 92 chr1 24623107 24623194 -257570470 + MADE1 DNA Mariner 2 80 0 1415 205 51 63 chr1 24623194 24623236 -257570428 - MLT1D LTR MaLR -427 78 41 2014 88 80 0 chr1 24623236 24623510 -257570154 + AluSx SINE Alu 1 296 -16 1415 205 51 63 chr1 24623510 24623551 -257570113 - MLT1D LTR MaLR -464 41 1 2273 136 26 38 chr1 24623556 24623599 -257570065 + LTR37A LTR ERV1 3 45 -381 1300 192 72 48 chr1 24623599 24623743 -257569921 + MER58B DNA MER1_type 1 140 -2280 2501 59 0 16 chr1 24623743 24624047 -257569617 + AluY SINE Alu 1 299 -12 1300 192 72 48 chr1 24624047 24624235 -257569429 + MER58B DNA MER1_type 140 341 0 2273 136 26 38 chr1 24624235 24624536 -257569128 + LTR37A LTR ERV1 45 344 -82 1997 96 82 14 chr1 24624536 24624827 -257568837 + AluSq SINE Alu 1 311 -2 2273 136 26 38 chr1 24624827 24624908 -257568756 + LTR37A LTR ERV1 344 424 -2 35 24 0 0 chr1 24625169 24625211 -257568453 + AT_rich Low_complexity Low_complexity 1 42 0 1716 167 0 29 chr1 24625220 24625531 -257568133 + AluJo SINE Alu 1 302 -10 207 288 321 0 chr1 24625540 24625724 -257567940 + MIR SINE MIR 20 262 0 192 233 0 0 chr1 24625828 24625871 -257567793 - MIR SINE MIR -70 192 150 1994 140 3 13 chr1 24625891 24626205 -257567459 + AluJb SINE Alu 1 311 -1 547 346 77 3 chr1 24626220 24626506 -257567158 + L3 LINE CR1 1261 1567 -10 526 195 55 39 chr1 24626796 24626924 -257566740 + MER69A DNA AcHobo 47 176 -1 2324 70 23 13 chr1 24627088 24627387 -257566277 + AluY SINE Alu 1 302 -9 761 148 0 8 chr1 24627390 24627512 -257566152 + AluJb SINE Alu 170 290 -22 829 127 0 0 chr1 24627514 24627624 -257566040 + AluSq/x SINE Alu 1 110 -202 277 135 0 0 chr1 24627637 24627674 -257565990 - 7SLRNA srpRNA srpRNA -220 100 64 2152 121 3 3 chr1 24627844 24628134 -257565530 + AluSx SINE Alu 1 290 -22 1569 168 44 37 chr1 24628591 24628713 -257564951 + AluJo SINE Alu 1 121 -191 243 0 0 0 chr1 24628713 24628740 -257564924 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1529 121 0 5 chr1 24628741 24628956 -257564708 - AluSg/x SINE Alu -13 299 86 1569 168 44 37 chr1 24628956 24629128 -257564536 + AluJo SINE Alu 120 299 -13 216 0 0 0 chr1 24629162 24629186 -257564478 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 275 189 0 0 chr1 24629893 24629946 -257563718 - MER20 DNA MER1_type 0 219 167 597 251 17 46 chr1 24629970 24630145 -257563519 + MER69A DNA AcHobo 1 170 -7 1305 178 111 19 chr1 24630206 24630372 -257563292 - AluJo SINE Alu -17 295 93 1986 78 7 26 chr1 24630372 24630641 -257563023 - AluSc SINE Alu -10 299 36 1305 178 111 19 chr1 24630641 24630744 -257562920 - AluJo SINE Alu -219 93 1 2342 81 0 16 chr1 24630771 24631080 -257562584 - AluY SINE Alu -7 304 1 812 183 0 0 chr1 24631086 24631217 -257562447 - FLAM_C SINE Alu -12 131 1 358 279 27 18 chr1 24631222 24631333 -257562331 + MER103 DNA DNA 52 163 -3 2262 109 3 3 chr1 24631655 24631966 -257561698 + AluSq SINE Alu 1 311 -2 1866 149 3 17 chr1 24632139 24632435 -257561229 - AluJo SINE Alu -20 292 1 441 318 81 0 chr1 24632474 24632622 -257561042 + MIR SINE MIR 21 180 -82 1649 124 0 0 chr1 24632674 24632899 -257560765 + AluSg/x SINE Alu 71 295 -17 25 0 0 0 chr1 24636716 24636741 -257556923 + AT_rich Low_complexity Low_complexity 1 25 0 2089 125 0 0 chr1 24637118 24637421 -257556243 + AluSx SINE Alu 3 305 -7 1488 166 23 23 chr1 24637740 24638042 -257555622 - AluJb SINE Alu -10 302 1 430 91 0 0 chr1 24638137 24638192 -257555472 + AluY SINE Alu 133 187 -124 536 187 119 8 chr1 24639225 24639359 -257554305 + MIR SINE MIR 44 192 -70 552 299 68 70 chr1 24639390 24639981 -257553683 + L2 LINE L2 2584 3251 -21 1924 107 3 14 chr1 24640050 24640341 -257553323 - AluSx SINE Alu -24 288 1 1580 163 0 14 chr1 24640471 24640747 -257552917 - AluJo SINE Alu -39 273 2 724 298 169 50 chr1 24640826 24640853 -257552811 - L2 LINE L2 -6 3307 3285 2262 93 0 0 chr1 24640853 24641152 -257552512 + AluSx SINE Alu 2 300 -12 2078 122 0 6 chr1 24641152 24641464 -257552200 + AluSg SINE Alu 1 310 0 724 298 169 50 chr1 24641153 24641856 -257551808 - L2 LINE L2 -28 3285 2838 249 251 65 129 chr1 24641873 24641983 -257551681 - L2 LINE L2 -973 2341 2225 2137 80 10 23 chr1 24641983 24642285 -257551379 + AluSp SINE Alu 1 298 -15 1611 173 22 26 chr1 24642294 24642607 -257551057 + AluJb SINE Alu 1 312 0 249 251 65 129 chr1 24642607 24642765 -257550899 - L2 LINE L2 -1097 2217 2081 2396 40 0 23 chr1 24642965 24643267 -257550397 - AluY SINE Alu -6 305 11 814 189 34 0 chr1 24643713 24643861 -257549803 - FRAM SINE Alu -23 153 1 809 174 0 34 chr1 24643880 24644029 -257549635 + AluJb SINE Alu 149 292 -20 1061 152 0 0 chr1 24644228 24644399 -257549265 - AluSx SINE Alu -141 171 1 1494 158 75 7 chr1 24644636 24644915 -257548749 - AluJb SINE Alu -14 298 1 302 305 162 25 chr1 24645000 24645197 -257548467 + MIR SINE MIR 31 254 -8 2118 104 3 16 chr1 24645335 24645643 -257548021 + AluSx SINE Alu 1 304 -8 1783 150 28 0 chr1 24645865 24646151 -257547513 - AluSx SINE Alu -6 306 13 923 140 0 0 chr1 24646151 24646287 -257547377 - AluJb SINE Alu -176 136 1 1966 123 0 45 chr1 24646446 24646755 -257546909 - AluSx SINE Alu -17 295 1 1763 151 0 3 chr1 24646845 24647176 -257546488 - AluJb SINE Alu 0 330 1 2234 104 0 0 chr1 24647176 24647474 -257546190 - AluSc SINE Alu -10 299 1 2276 96 0 0 chr1 24647496 24647799 -257545865 - AluSp SINE Alu -4 309 7 2051 111 7 14 chr1 24648020 24648317 -257545347 + AluSx SINE Alu 1 295 -17 1147 202 90 0 chr1 24648357 24648634 -257545030 + Charlie4a DNA MER1_type 17 318 -190 909 156 0 128 chr1 24648643 24648900 -257544764 + AluJb SINE Alu 88 311 -1 2508 44 0 0 chr1 24648904 24649202 -257544462 + AluY SINE Alu 1 298 -13 2237 70 3 25 chr1 24649204 24649520 -257544144 + AluY SINE Alu 1 309 -2 758 158 96 6 chr1 24649525 24649702 -257543962 + Charlie4a DNA MER1_type 310 502 -6 244 143 24 0 chr1 24649712 24649754 -257543910 + MER69A DNA AcHobo 2 44 -133 603 88 0 197 chr1 24649759 24649896 -257543768 + FLAM_C SINE Alu 20 129 -14 423 188 40 30 chr1 24649897 24649998 -257543666 + MER69A DNA AcHobo 33 134 -43 246 75 0 57 chr1 24650000 24650053 -257543611 + (TTTTC)n Simple_repeat Simple_repeat 5 54 0 2061 104 7 0 chr1 24650062 24650359 -257543305 - AluSq SINE Alu -14 299 1 2104 103 20 0 chr1 24650462 24650764 -257542900 - AluSq SINE Alu -5 308 1 347 208 240 10 chr1 24658126 24658222 -257535442 + L2 LINE L2 3192 3309 -4 2012 117 10 0 chr1 24658527 24658818 -257534846 - AluY SINE Alu -17 294 1 723 252 0 0 chr1 24659133 24659280 -257534384 + MIR SINE MIR 116 262 0 959 112 0 96 chr1 24659404 24659591 -257534073 - AluJo/FRAM SINE Alu -7 305 137 1411 75 0 35 chr1 24659594 24659795 -257533869 - AluY SINE Alu -1 310 117 2434 59 0 0 chr1 24659916 24660222 -257533442 + AluY SINE Alu 1 306 -5 514 194 136 0 chr1 24660249 24660352 -257533312 + AluJo/FLAM SINE Alu 1 117 -185 1651 117 8 0 chr1 24660352 24660600 -257533064 + AluSq SINE Alu 36 285 -28 5834 91 42 74 chr1 24660606 24661194 -257532470 - L1MA3 LINE L1 -79 6226 5682 2190 94 3 3 chr1 24661194 24661502 -257532162 - AluSc SINE Alu -1 308 1 5834 91 42 74 chr1 24661502 24661918 -257531746 - L1MA3 LINE L1 -623 5682 5254 662 119 50 0 chr1 24661925 24662026 -257531638 + MLT1D LTR MaLR 400 505 0 399 251 27 9 chr1 24662036 24662162 -257531502 - MER31-int LTR ERV1 -474 5789 4108 1947 114 28 0 chr1 24662169 24662458 -257531206 + AluSx SINE Alu 1 297 -15 1841 152 3 0 chr1 24662629 24662945 -257530719 - AluSx SINE Alu 0 312 1 1760 161 3 3 chr1 24662947 24663245 -257530419 - AluJb SINE Alu -14 298 1 2221 114 6 15 chr1 24663250 24663592 -257530072 - L1PA16 LINE L1 0 6166 5828 1943 119 7 13 chr1 24663592 24663894 -257529770 - AluSx SINE Alu -12 300 1 1115 113 19 0 chr1 24663897 24664057 -257529607 - L1PA16 LINE L1 -390 5776 5614 1486 126 0 5 chr1 24664059 24664273 -257529391 - AluSx SINE Alu -97 215 3 1669 182 43 29 chr1 24664285 24664702 -257528962 - Charlie4a DNA MER1_type -65 443 21 36 19 0 19 chr1 24664773 24664815 -257528849 + AT_rich Low_complexity Low_complexity 1 43 -10 2116 109 0 6 chr1 24664815 24665127 -257528537 - AluSq SINE Alu -3 310 1 36 19 0 19 chr1 24665127 24665138 -257528526 + AT_rich Low_complexity Low_complexity 43 53 0 1912 134 0 23 chr1 24665138 24665307 -257528357 - AluSx SINE Alu -14 298 138 2223 108 0 0 chr1 24665307 24665614 -257528050 - AluSx SINE Alu -5 307 1 1912 134 0 23 chr1 24665614 24665749 -257527915 - AluSx SINE Alu -174 138 1 1293 196 43 63 chr1 24666024 24666196 -257527468 - AluJo SINE Alu -7 295 130 1893 114 0 7 chr1 24666196 24666467 -257527197 - AluSx SINE Alu -22 290 22 1293 196 43 63 chr1 24666467 24666595 -257527069 - AluJo SINE Alu -172 130 1 280 267 117 25 chr1 24666799 24666919 -257526745 - MLT1K LTR MaLR -2 586 456 1061 149 0 28 chr1 24667169 24667399 -257526265 + FRAM SINE Alu 1 225 0 823 179 26 6 chr1 24667407 24667563 -257526101 - LTR53 LTR ERVL -166 353 195 207 316 13 13 chr1 24667863 24667942 -257525722 - L3 LINE CR1 -140 1437 1359 332 109 0 0 chr1 24667997 24668043 -257525621 + MER58 DNA MER1_type 2357 2402 -18 468 200 124 0 chr1 24668109 24668214 -257525450 + MIR SINE MIR 46 163 -99 672 147 6 103 chr1 24668214 24668316 -257525348 + L1MB7 LINE L1 6025 6108 -76 2178 105 3 16 chr1 24668316 24668629 -257525035 - AluSx SINE Alu -3 309 1 672 147 6 103 chr1 24668629 24668682 -257524982 + L1MB7 LINE L1 6108 6165 -19 1099 185 0 18 chr1 24668694 24668921 -257524743 + AluJo SINE Alu 89 311 -1 363 286 0 0 chr1 24668946 24669030 -257524634 + MIR SINE MIR 158 241 -21 192 77 0 0 chr1 24669031 24669057 -257524607 + (CAT)n Simple_repeat Simple_repeat 3 28 0 26 30 0 0 chr1 24669223 24669256 -257524408 + AT_rich Low_complexity Low_complexity 1 33 0 2337 31 0 14 chr1 24669369 24669685 -257523979 + AluY SINE Alu 2 313 0 2334 82 0 0 chr1 24669727 24670031 -257523633 + AluSx SINE Alu 1 304 -8 1178 118 0 17 chr1 24670035 24670213 -257523451 + AluSg/x SINE Alu 125 299 -11 1269 127 47 47 chr1 24670283 24670536 -257523128 + AluY SINE Alu 57 309 -2 889 171 76 0 chr1 24670737 24670895 -257522769 - FAM SINE Alu -5 170 1 21 0 0 0 chr1 24670997 24671018 -257522646 + AT_rich Low_complexity Low_complexity 1 21 0 552 234 94 42 chr1 24671042 24671328 -257522336 + L1MC4a LINE L1 5592 5892 -1916 1512 174 0 11 chr1 24671328 24671592 -257522072 + AluJb SINE Alu 1 261 -51 225 0 0 0 chr1 24671637 24671662 -257522002 + (A)n Simple_repeat Simple_repeat 1 25 0 354 293 76 38 chr1 24671900 24672057 -257521607 + L1MC4a LINE L1 5793 5955 -1853 1637 174 3 7 chr1 24672120 24672403 -257521261 + AluJo SINE Alu 1 284 -28 224 0 65 0 chr1 24672403 24672434 -257521230 + (CTAAA)n Simple_repeat Simple_repeat 3 35 0 1637 174 3 7 chr1 24672434 24672460 -257521204 + AluJo SINE Alu 284 309 -3 459 273 42 36 chr1 24673135 24673300 -257520364 + MIR SINE MIR 16 181 -81 309 194 79 33 chr1 24674680 24674796 -257518868 + MIR SINE MIR 20 133 -75 2084 98 10 16 chr1 24674830 24675137 -257518527 + AluSx SINE Alu 2 306 -6 1201 77 0 0 chr1 24675143 24675298 -257518366 + L1PB1 LINE L1 5996 6150 -1 240 262 16 0 chr1 24675345 24675406 -257518258 - MIR SINE MIR -72 136 75 649 177 3 233 chr1 24675896 24676016 -257517648 + MIR SINE MIR 29 49 -213 2239 100 7 0 chr1 24676016 24676325 -257517339 + AluSx SINE Alu 1 311 -1 649 177 3 233 chr1 24676325 24676487 -257517177 + MIR SINE MIR 49 246 -16 243 204 19 19 chr1 24676489 24676543 -257517121 + L2 LINE L2 3180 3233 -80 1732 168 0 14 chr1 24676603 24676900 -257516764 + AluJb SINE Alu 1 293 -19 1788 116 36 4 chr1 24676900 24677204 -257516460 + AluJb SINE Alu 1 314 0 338 350 20 25 chr1 24677340 24677537 -257516127 + L2 LINE L2 3116 3311 -2 957 51 153 0 chr1 24677622 24677759 -257515905 + AluY SINE Alu 136 293 -18 709 199 0 22 chr1 24677768 24677904 -257515760 + FLAM_A SINE Alu 1 133 0 1783 159 3 28 chr1 24677914 24678234 -257515430 + AluJo SINE Alu 1 312 0 228 213 0 93 chr1 24679200 24679275 -257514389 - MIR SINE MIR -12 250 183 558 272 134 5 chr1 24679422 24679624 -257514040 - MIR SINE MIR 0 262 35 941 97 0 84 chr1 24679624 24679692 -257513972 - MLT1A1 LTR MaLR 0 365 315 2044 92 18 11 chr1 24679692 24679999 -257513665 + AluSq SINE Alu 1 309 0 941 97 0 84 chr1 24679999 24680084 -257513580 - MLT1A1 LTR MaLR -50 315 224 964 163 22 22 chr1 24680441 24680625 -257513039 - MLT1A1 LTR MaLR -180 185 2 370 227 9 73 chr1 24680877 24680987 -257512677 + L2 LINE L2 2967 3069 -203 431 308 103 11 chr1 24681000 24681185 -257512479 + MIR SINE MIR 61 262 0 2283 93 0 0 chr1 24682251 24682552 -257511112 + AluSx SINE Alu 1 301 -11 2108 99 7 3 chr1 24682578 24682872 -257510792 + AluSp SINE Alu 1 295 -18 987 253 59 13 chr1 24682951 24683188 -257510476 - MIR SINE MIR -2 260 13 282 311 0 0 chr1 24683452 24683542 -257510122 - MIR SINE MIR -85 123 34 1333 194 155 85 chr1 24683814 24683852 -257509812 + MLT1D LTR MaLR 1 35 -470 1562 143 47 63 chr1 24683852 24684152 -257509512 + AluJo SINE Alu 1 295 -17 1333 194 155 85 chr1 24684152 24684514 -257509150 + MLT1D LTR MaLR 35 370 -135 1905 140 7 0 chr1 24684514 24684799 -257508865 - AluSx SINE Alu -25 287 1 1550 138 16 84 chr1 24684800 24685111 -257508553 - AluJo SINE Alu -21 291 2 1333 194 155 85 chr1 24685111 24685177 -257508487 + MLT1D LTR MaLR 369 503 -2 353 268 52 0 chr1 24685424 24685521 -257508143 - MIR SINE MIR -60 148 47 333 68 0 0 chr1 24685675 24685719 -257507945 + (TC)n Simple_repeat Simple_repeat 2 45 0 2170 132 0 3 chr1 24686148 24686452 -257507212 - AluSx SINE Alu -7 305 3 25 0 0 0 chr1 24686829 24686854 -257506810 + AT_rich Low_complexity Low_complexity 1 25 0 1539 147 0 0 chr1 24690668 24690892 -257502772 - AluSg/x SINE Alu -18 294 71 465 307 84 17 chr1 24690928 24691107 -257502557 - MIR SINE MIR -57 205 15 1906 155 3 10 chr1 24691131 24691428 -257502236 + AluJo SINE Alu 1 295 -17 2236 105 3 3 chr1 24691597 24691912 -257501752 - AluSq SINE Alu 0 315 1 386 220 35 98 chr1 24692233 24692349 -257501315 - MER103 DNA DNA -3 163 41 1848 169 0 45 chr1 24692349 24692486 -257501178 + AluJb SINE Alu 1 143 -169 2434 80 0 10 chr1 24692486 24692798 -257500866 + AluY SINE Alu 1 309 -2 2202 118 0 25 chr1 24692806 24693093 -257500571 + AluSx SINE Alu 1 281 -31 216 0 0 0 chr1 24693093 24693117 -257500547 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2202 118 0 25 chr1 24693117 24693143 -257500521 + AluSx SINE Alu 281 306 -6 1848 169 0 45 chr1 24693143 24693310 -257500354 + AluJb SINE Alu 150 300 -12 386 220 35 98 chr1 24693310 24693366 -257500298 - MER103 DNA DNA -125 41 2 261 280 130 30 chr1 24695089 24695189 -257498475 + L2 LINE L2 3151 3260 -12 27 0 0 0 chr1 24696318 24696345 -257497319 + GC_rich Low_complexity Low_complexity 1 27 0 588 107 0 0 chr1 24697629 24697713 -257495951 + HY4 scRNA scRNA 1 84 -9 375 262 213 6 chr1 24697777 24697960 -257495704 + MIR SINE MIR 2 222 -40 22 0 0 0 chr1 24699127 24699149 -257494515 + AT_rich Low_complexity Low_complexity 1 22 0 475 250 69 66 chr1 24699361 24699681 -257493983 - L2 LINE L2 -122 3150 2830 225 200 254 27 chr1 24700173 24700247 -257493417 + MIR SINE MIR 5 61 -201 2163 106 7 0 chr1 24700247 24700531 -257493133 + AluSg SINE Alu 13 298 -12 225 200 254 27 chr1 24700531 24700566 -257493098 + MIR SINE MIR 61 139 -123 847 149 56 104 chr1 24700568 24700752 -257492912 + L1MB2 LINE L1 5934 6104 -67 1910 155 7 0 chr1 24700752 24701036 -257492628 + AluSx SINE Alu 1 286 -26 847 149 56 104 chr1 24701036 24701100 -257492564 + L1MB2 LINE L1 6104 6170 -1 213 250 170 20 chr1 24701104 24701204 -257492460 + MIR SINE MIR 146 260 -2 * 727 239 32 11 chr1 24701183 24701371 -257492293 - MIR SINE MIR 0 262 71 239 316 60 17 chr1 24701479 24701596 -257492068 - L2 LINE L2 -181 3091 2970 1957 93 102 12 chr1 24701729 24702098 -257491566 + LTR7 LTR ERV1 1 450 0 2561 77 0 0 chr1 24702340 24702651 -257491013 + AluY SINE Alu 1 311 0 1825 138 0 77 chr1 24702848 24702987 -257490677 + AluJo SINE Alu 5 153 -159 1868 136 47 4 chr1 24702987 24703266 -257490398 - AluSx SINE Alu -20 292 2 1825 138 0 77 chr1 24703266 24703452 -257490212 + AluJo SINE Alu 153 305 -7 1694 191 11 3 chr1 24703457 24703740 -257489924 + AluJo SINE Alu 5 289 -23 2248 92 6 44 chr1 24704026 24704342 -257489322 - AluSx SINE Alu -8 304 1 323 252 84 49 chr1 24704526 24704669 -257488995 - L2 LINE L2 -279 2993 2846 2284 81 0 58 chr1 24705138 24705447 -257488217 + AluSg SINE Alu 1 291 -19 1918 111 41 4 chr1 24705457 24705753 -257487911 + AluSx SINE Alu 1 306 0 327 264 122 37 chr1 24705885 24705939 -257487725 + MER5A DNA MER1_type 6 54 -135 2175 145 3 0 chr1 24705939 24706249 -257487415 + AluJo SINE Alu 1 311 -1 327 264 122 37 chr1 24706249 24706359 -257487305 + MER5A DNA MER1_type 54 186 -3 253 246 15 31 chr1 24706540 24706605 -257487059 + MIR SINE MIR 25 88 -120 2430 89 0 10 chr1 24706687 24706990 -257486674 + AluSq SINE Alu 1 300 -13 2088 137 0 3 chr1 24707001 24707315 -257486349 + AluSx SINE Alu 1 313 0 1859 136 0 4 chr1 24707540 24707798 -257485866 + AluSx SINE Alu 1 257 -55 210 26 77 0 chr1 24707803 24707842 -257485822 + A-rich Low_complexity Low_complexity 2 43 0 268 98 0 39 chr1 24708186 24708237 -257485427 - MADE1 DNA Mariner -31 49 1 699 196 15 15 chr1 24708457 24708590 -257485074 - FLAM_A SINE Alu 0 133 1 438 240 262 27 chr1 24708926 24709109 -257484555 + MIR SINE MIR 20 245 -17 695 200 77 82 chr1 24709326 24709426 -257484238 - MIR SINE MIR -11 251 151 2334 79 31 0 chr1 24709426 24709716 -257483948 - AluSp SINE Alu -14 299 1 695 200 77 82 chr1 24709716 24709810 -257483854 - MIR SINE MIR -111 151 58 844 253 39 0 chr1 24709862 24710040 -257483624 + MER91A DNA MER1_type 12 196 0 675 277 97 15 chr1 24710040 24710238 -257483426 - MIR SINE MIR -46 216 2 2603 58 0 3 chr1 24710374 24710684 -257482980 + AluY SINE Alu 1 309 -2 182 269 75 15 chr1 24710725 24710792 -257482872 + MIR SINE MIR 84 154 -108 196 258 275 25 chr1 24710858 24710978 -257482686 - MIR SINE MIR -76 186 37 1406 69 0 6 chr1 24712039 24712213 -257481451 - AluSg/x SINE Alu -9 303 131 180 216 0 0 chr1 24712274 24712311 -257481353 + L2 LINE L2 3019 3055 -217 328 258 67 0 chr1 24712340 24712429 -257481235 - MIR3 SINE MIR -11 197 103 274 267 81 0 chr1 24713311 24713397 -257480267 + MIR3 SINE MIR 109 201 -7 1802 127 0 99 chr1 24713584 24713908 -257479756 - AluJb SINE Alu -14 298 7 2291 110 0 7 chr1 24713926 24714101 -257479563 - AluSx SINE Alu -4 308 134 2379 85 0 0 chr1 24714101 24714395 -257479269 - AluY SINE Alu -16 295 2 2291 110 0 7 chr1 24714395 24714528 -257479136 - AluSx SINE Alu -178 134 2 2461 88 0 0 chr1 24715576 24715872 -257477792 - AluSc SINE Alu -13 296 1 1741 153 26 42 chr1 24716046 24716359 -257477305 - AluJb SINE Alu -4 308 1 2116 131 7 3 chr1 24716582 24716879 -257476785 + AluSq SINE Alu 1 298 -15 1158 110 6 12 chr1 24716879 24717043 -257476621 + AluSg/x SINE Alu 137 299 -13 651 218 0 98 chr1 24717117 24717291 -257476373 + MER63A DNA MER1_type 54 210 0 2167 119 6 38 chr1 24717563 24717882 -257475782 + AluSx SINE Alu 1 309 -3 317 229 143 19 chr1 24718264 24718369 -257475295 + L2 LINE L2 3155 3272 0 201 338 113 63 chr1 24718539 24718699 -257474965 + L2 LINE L2 3039 3214 -58 2021 95 46 7 chr1 24718699 24718984 -257474680 - AluSc SINE Alu -13 296 1 201 338 113 63 chr1 24718984 24719045 -257474619 + L2 LINE L2 3214 3271 -1 1734 164 4 0 chr1 24719291 24719565 -257474099 + AluJo SINE Alu 1 275 -37 457 111 28 0 chr1 24719586 24719658 -257474006 + AluSp/q SINE Alu 232 305 -8 757 199 192 8 chr1 24719665 24719814 -257473850 + L1MC4 LINE L1 7732 7852 -190 273 98 0 0 chr1 24719814 24719855 -257473809 + (CA)n Simple_repeat Simple_repeat 2 42 0 757 199 192 8 chr1 24719855 24719966 -257473698 + L1MC4 LINE L1 7852 8040 -2 2504 61 0 0 chr1 24719993 24720287 -257473377 - AluY SINE Alu -17 294 1 952 264 137 48 chr1 24720506 24720922 -257472742 - L2 LINE L2 -2 3311 2859 367 254 127 0 chr1 24720932 24721042 -257472622 + L2 LINE L2 2732 2855 -459 2350 95 3 13 chr1 24721109 24721414 -257472250 + AluSx SINE Alu 1 302 -10 213 218 55 36 chr1 24721661 24721716 -257471948 + MIR3 SINE MIR 130 185 -23 194 269 62 106 chr1 24721670 24721878 -257471786 - MIR3 SINE MIR -3 205 7 * 1012 248 67 17 chr1 24722491 24722790 -257470874 - MER21B LTR ERV1 -54 809 496 1190 98 0 23 chr1 24722795 24722968 -257470696 - AluSg/x SINE Alu -14 298 130 274 267 81 0 chr1 24724181 24724267 -257469397 + MIR3 SINE MIR 109 201 -7 1802 127 0 99 chr1 24724454 24724778 -257468886 - AluJb SINE Alu -14 298 7 2302 107 0 7 chr1 24724796 24724971 -257468693 - AluSx SINE Alu -4 308 134 2480 65 0 0 chr1 24724971 24725264 -257468400 - AluY SINE Alu -17 294 2 2302 107 0 7 chr1 24725264 24725397 -257468267 - AluSx SINE Alu -178 134 2 2468 85 0 0 chr1 24726447 24726742 -257466922 - AluSc SINE Alu -14 295 1 850 169 14 27 chr1 24726938 24727086 -257466578 - AluJb SINE Alu -22 290 145 293 163 51 35 chr1 24727192 24727308 -257466356 + (CA)n Simple_repeat Simple_repeat 1 114 -615 3683 106 27 12 chr1 24727308 24727826 -257465838 - MER1A DNA MER1_type 0 527 2 293 163 51 35 chr1 24727826 24727910 -257465754 + (CA)n Simple_repeat Simple_repeat 114 729 0 641 274 59 10 chr1 24728005 24728209 -257465455 + MIR SINE MIR 33 246 -16 327 315 252 0 chr1 24728804 24728947 -257464717 + MIR SINE MIR 82 260 -2 264 282 35 0 chr1 24729036 24729121 -257464543 - MER103 DNA DNA -75 91 4 383 273 61 23 chr1 24729206 24729338 -257464326 - MIR3 SINE MIR -61 147 11 2309 100 0 7 chr1 24730032 24730333 -257463331 + AluSx SINE Alu 1 299 -13 392 298 48 8 chr1 24731057 24731181 -257462483 + MIR SINE MIR 104 232 -30 2199 124 3 10 chr1 24731210 24731516 -257462148 + AluSq SINE Alu 2 305 -8 530 355 11 11 chr1 24731644 24731833 -257461831 + MIR SINE MIR 7 195 -67 191 296 10 61 chr1 24732455 24732553 -257461111 - MIR SINE MIR 0 262 170 688 240 5 62 chr1 24732555 24732763 -257460901 - MIR SINE MIR -31 231 36 403 277 67 0 chr1 24732886 24733005 -257460659 - L2 LINE L2 0 3313 3187 613 254 94 66 chr1 24733017 24733241 -257460423 - MIR SINE MIR -7 255 22 1870 158 3 29 chr1 24733241 24733552 -257460112 - AluJb SINE Alu -5 307 5 613 254 94 66 chr1 24733552 24733571 -257460093 - MIR SINE MIR -240 22 5 435 38 0 0 chr1 24733615 24733668 -257459996 + (TA)n Simple_repeat Simple_repeat 1 53 0 1424 189 115 9 chr1 24733712 24734034 -257459630 - MLT1A2 LTR MaLR -18 356 1 2259 101 0 26 chr1 24734158 24734464 -257459200 - AluSx SINE Alu -14 298 1 1543 158 8 20 chr1 24734742 24734996 -257458668 - AluJo SINE Alu -60 252 2 342 283 121 10 chr1 24735281 24735380 -257458284 - MER91C DNA MER1_type -30 110 1 443 320 23 6 chr1 24736066 24736241 -257457423 + L2 LINE L2 2569 2746 -568 525 110 0 12 chr1 24736244 24736326 -257457338 + MER1B DNA MER1_type 1 81 -256 * 1277 122 5 5 chr1 24736315 24736504 -257457160 + MER1B DNA MER1_type 151 339 0 658 279 153 46 chr1 24736512 24736547 -257457117 + L2 LINE L2 2750 2780 -533 1972 171 3 0 chr1 24736547 24736857 -257456807 + AluSx SINE Alu 1 311 -1 658 279 153 46 chr1 24736857 24737334 -257456330 + L2 LINE L2 2780 3313 0 693 263 6 11 chr1 24737746 24737921 -257455743 + MIR SINE MIR 18 191 -71 499 264 68 0 chr1 24737986 24738134 -257455530 - MIR SINE MIR -13 249 92 263 364 36 32 chr1 24738759 24738979 -257454685 + L2 LINE L2 2892 3112 -160 813 264 23 72 chr1 24739083 24739165 -257454499 + Charlie8 DNA MER1_type 24 108 -2309 1871 129 31 28 chr1 24739165 24739452 -257454212 + AluJb SINE Alu 1 288 -24 813 264 23 72 chr1 24739452 24739634 -257454030 + Charlie8 DNA MER1_type 108 275 -2142 2311 96 0 3 chr1 24739804 24740096 -257453568 + AluSc SINE Alu 2 292 -17 348 224 40 104 chr1 24740355 24740562 -257453102 - MER20B DNA MER1_type -143 76 4 300 284 138 0 chr1 24740590 24740699 -257452965 - MER117 DNA MER1_type -43 154 31 1970 255 116 24 chr1 24740965 24741108 -257452556 + L2 LINE L2 2077 2205 -1108 1724 125 98 0 chr1 24741108 24741409 -257452255 - AluSx SINE Alu 0 326 1 1970 255 116 24 chr1 24741409 24742326 -257451338 + L2 LINE L2 2205 3311 -2 2353 92 0 52 chr1 24742412 24742764 -257450900 - AluSg SINE Alu 0 335 1 294 270 81 9 chr1 24743233 24743344 -257450320 + L2 LINE L2 2846 2964 -308 1910 141 0 17 chr1 24743561 24743859 -257449805 + AluSx SINE Alu 1 293 -19 757 121 0 64 chr1 24743859 24743999 -257449665 - AluJo/FLAM SINE Alu -170 132 2 2295 84 7 0 chr1 24744175 24744460 -257449204 + AluSg SINE Alu 21 307 -3 290 267 133 9 chr1 24744842 24744947 -257448717 + L2 LINE L2 3155 3272 0 2248 114 0 0 chr1 24745277 24745576 -257448088 - AluSx SINE Alu -13 299 1 649 217 0 103 chr1 24745848 24746023 -257447641 - MER63A DNA MER1_type 0 210 54 2226 113 14 0 chr1 24746097 24746390 -257447274 - AluSg SINE Alu -13 297 1 331 314 39 20 chr1 24746787 24746940 -257446724 + MIR SINE MIR 35 190 -72 2275 117 0 0 chr1 24747187 24747486 -257446178 + AluSx SINE Alu 1 299 -13 2161 126 10 0 chr1 24748190 24748500 -257445164 - AluSq SINE Alu 0 313 1 635 108 189 0 chr1 24748532 24748643 -257445021 - FLAM_C SINE Alu -10 133 2 221 119 24 0 chr1 24748788 24748830 -257444834 + (TGAA)n Simple_repeat Simple_repeat 3 45 0 372 323 91 35 chr1 24749601 24749833 -257443831 + L1ME4a LINE L1 5875 6119 -2 364 279 5 100 chr1 24749864 24749936 -257443728 + L2 LINE L2 3094 3171 -142 2250 104 0 14 chr1 24749936 24750233 -257443431 - AluSx SINE Alu -19 293 1 364 279 5 100 chr1 24750233 24750350 -257443314 + L2 LINE L2 3171 3265 -48 296 230 70 30 chr1 24750416 24750516 -257443148 + LTR16C LTR ERVL 113 216 -275 2248 119 7 3 chr1 24750905 24751215 -257442449 + AluSx SINE Alu 1 311 -1 2284 119 0 3 chr1 24751532 24751843 -257441821 - AluSx SINE Alu -2 310 1 3746 71 80 5 chr1 24751933 24752485 -257441179 + LTR61 LTR ERV1 1 593 -2 23 0 0 0 chr1 24752633 24752656 -257441008 + AT_rich Low_complexity Low_complexity 1 23 0 1111 128 0 0 chr1 24752656 24752805 -257440859 + FRAM SINE Alu 18 166 -10 231 36 0 0 chr1 24753175 24753203 -257440461 + (TC)n Simple_repeat Simple_repeat 1 28 0 7159 64 22 19 chr1 24753204 24754852 -257438812 + SVA Other Other 1 1379 -7 506 252 9 0 chr1 24754867 24754982 -257438682 + MIR SINE MIR 54 169 -93 300 284 25 0 chr1 24755014 24755028 -257438636 + MIR SINE MIR 6 18 -244 2275 120 3 0 chr1 24755028 24755329 -257438335 + AluSx SINE Alu 1 302 -10 300 284 25 0 chr1 24755329 24755395 -257438269 + MIR SINE MIR 18 88 -174 1910 133 0 62 chr1 24755400 24755709 -257437955 + AluJb SINE Alu 1 290 -22 2501 65 0 16 chr1 24755717 24756023 -257437641 + AluY SINE Alu 1 301 -10 624 92 0 0 chr1 24756023 24756110 -257437554 + AluSc SINE Alu 132 218 -91 36 23 0 0 chr1 24756112 24756155 -257437509 + AT_rich Low_complexity Low_complexity 1 43 0 401 233 163 0 chr1 24756161 24756290 -257437374 + MIR SINE MIR 113 262 0 191 203 228 13 chr1 24756762 24756841 -257436823 - MIR3 SINE MIR -12 196 101 439 228 0 0 chr1 24756878 24756970 -257436694 - AluJb SINE Alu -13 299 208 2512 71 0 3 chr1 24757008 24757316 -257436348 + AluY SINE Alu 2 308 -3 707 120 19 0 chr1 24757317 24757425 -257436239 - AluJo/FLAM SINE Alu -201 111 2 940 170 181 6 chr1 24757617 24757788 -257435876 + AluSg/x SINE Alu 84 284 -25 267 31 0 0 chr1 24757791 24757823 -257435841 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 1633 176 3 89 chr1 24757980 24758316 -257435348 - AluSq SINE Alu -5 308 2 381 292 71 0 chr1 24758485 24758639 -257435025 - MIR SINE MIR -1 261 97 353 127 0 16 chr1 24758684 24758747 -257434917 - MER69 DNA AcHobo -3 2523 2462 452 66 0 0 chr1 24758761 24758822 -257434842 + Alu SINE Alu 6 66 -252 525 110 0 12 chr1 24758967 24759049 -257434615 + MER1B DNA MER1_type 1 81 -256 * 1277 122 5 5 chr1 24759038 24759227 -257434437 + MER1B DNA MER1_type 151 339 0 665 281 153 46 chr1 24759235 24759270 -257434394 + L2 LINE L2 2750 2780 -533 1997 168 3 0 chr1 24759270 24759580 -257434084 + AluSx SINE Alu 1 311 -1 665 281 153 46 chr1 24759580 24760057 -257433607 + L2 LINE L2 2780 3313 0 693 263 6 11 chr1 24760469 24760644 -257433020 + MIR SINE MIR 18 191 -71 499 264 68 0 chr1 24760709 24760857 -257432807 - MIR SINE MIR -13 249 92 263 364 36 32 chr1 24761482 24761702 -257431962 + L2 LINE L2 2892 3112 -160 827 260 23 72 chr1 24761806 24761888 -257431776 + Charlie8 DNA MER1_type 24 108 -2309 1871 129 31 28 chr1 24761888 24762175 -257431489 + AluJb SINE Alu 1 288 -24 827 260 23 72 chr1 24762175 24762357 -257431307 + Charlie8 DNA MER1_type 108 275 -2142 2328 95 0 3 chr1 24762527 24762821 -257430843 + AluSc SINE Alu 2 294 -15 372 220 40 104 chr1 24763079 24763286 -257430378 - MER20B DNA MER1_type -143 76 4 300 284 138 0 chr1 24763314 24763423 -257430241 - MER117 DNA MER1_type -43 154 31 1986 254 115 24 chr1 24763689 24763832 -257429832 + L2 LINE L2 2077 2206 -1107 1746 121 98 0 chr1 24763832 24764133 -257429531 - AluSx SINE Alu 0 326 1 1986 254 115 24 chr1 24764133 24765051 -257428613 + L2 LINE L2 2206 3311 -2 2457 96 0 3 chr1 24765133 24765473 -257428191 - AluSx SINE Alu 0 312 1 221 119 24 0 chr1 24765615 24765657 -257428007 + (TGAA)n Simple_repeat Simple_repeat 3 45 0 372 323 91 35 chr1 24766428 24766660 -257427004 + L1ME4a LINE L1 5875 6119 -2 364 279 5 100 chr1 24766691 24766763 -257426901 + L2 LINE L2 3094 3171 -142 2250 104 0 14 chr1 24766763 24767060 -257426604 - AluSx SINE Alu -19 293 1 364 279 5 100 chr1 24767060 24767177 -257426487 + L2 LINE L2 3171 3265 -48 295 214 97 29 chr1 24767240 24767343 -257426321 + LTR16C LTR ERVL 107 216 -275 2283 120 7 0 chr1 24767732 24768041 -257425623 + AluSx SINE Alu 1 311 -1 2269 122 0 3 chr1 24768358 24768669 -257424995 - AluSx SINE Alu -2 310 1 3746 71 80 5 chr1 24768759 24769311 -257424353 + LTR61 LTR ERV1 1 593 -2 23 0 0 0 chr1 24769459 24769482 -257424182 + AT_rich Low_complexity Low_complexity 1 23 0 1130 121 0 0 chr1 24769482 24769631 -257424033 + FRAM SINE Alu 18 166 -10 2445 76 0 17 chr1 24769632 24769933 -257423731 + AluSp SINE Alu 1 296 -17 407 226 174 116 chr1 24770289 24770348 -257423316 + L1ME4a LINE L1 5902 5956 -165 1833 148 41 7 chr1 24770348 24770639 -257423025 - AluSx SINE Alu -11 301 1 2245 122 0 0 chr1 24770649 24770945 -257422719 - AluSx SINE Alu -16 296 1 407 226 174 116 chr1 24770945 24771064 -257422600 + L1ME4a LINE L1 5964 6102 -19 469 235 113 67 chr1 24771085 24771195 -257422469 + L1ME4a LINE L1 5873 5976 -145 266 87 22 0 chr1 24771195 24771241 -257422423 + (TA)n Simple_repeat Simple_repeat 1 47 0 469 235 113 67 chr1 24771241 24771283 -257422381 + L1ME4a LINE L1 5976 6015 -106 2101 112 3 21 chr1 24771283 24771601 -257422063 - AluSg SINE Alu 0 313 1 2021 128 4 4 chr1 24771608 24771912 -257421752 - AluSg SINE Alu 0 304 1 469 235 113 67 chr1 24771912 24771986 -257421678 + L1ME4a LINE L1 6020 6121 0 2393 98 3 0 chr1 24772227 24772534 -257421130 - AluSx SINE Alu -4 308 1 299 214 0 83 chr1 24772535 24772619 -257421045 - HAL1 LINE L1 -2426 81 5 350 263 83 0 chr1 24773112 24773206 -257420458 + L1ME4a LINE L1 5964 6074 -47 2540 87 3 0 chr1 24773206 24773517 -257420147 - AluSp SINE Alu -1 312 1 350 263 83 0 chr1 24773517 24773555 -257420109 + L1ME4a LINE L1 6074 6107 -14 2181 127 0 0 chr1 24773702 24774001 -257419663 - AluJb SINE Alu -11 301 3 207 265 20 0 chr1 24774534 24774583 -257419081 + CT-rich Low_complexity Low_complexity 3 52 0 234 189 19 0 chr1 24774705 24774758 -257418906 + (CA)n Simple_repeat Simple_repeat 1 54 0 263 272 68 48 chr1 24775006 24775109 -257418555 - L2 LINE L2 0 3272 3168 2332 100 0 0 chr1 24775534 24775823 -257417841 - AluSx SINE Alu -23 289 1 2236 124 3 0 chr1 24776772 24777071 -257416593 + AluSx SINE Alu 7 306 -6 1739 222 32 53 chr1 24777075 24777465 -257416199 - L1ME1 LINE L1 -5 6161 5783 2084 141 0 7 chr1 24777465 24777755 -257415909 - AluJb SINE Alu -24 288 1 1739 222 32 53 chr1 24777755 24777895 -257415769 - L1ME1 LINE L1 -383 5783 5642 761 215 58 92 chr1 24778351 24778612 -257415052 - MIR SINE MIR -10 252 1 1931 167 49 24 chr1 24778674 24779099 -257414565 + MER63B DNA MER1_type 1 436 0 257 254 32 75 chr1 24779971 24780127 -257413537 - MIR SINE MIR -60 148 3 213 196 65 0 chr1 24780582 24780628 -257413036 - MIR SINE MIR -97 165 117 278 231 41 33 chr1 24781057 24781178 -257412486 + C-rich Low_complexity Low_complexity 4 125 0 21 0 0 0 chr1 24781370 24781391 -257412273 + GC_rich Low_complexity Low_complexity 1 21 0 432 0 0 0 chr1 24782388 24782436 -257411228 + (TG)n Simple_repeat Simple_repeat 2 49 0 293 233 0 0 chr1 24782573 24782633 -257411031 - MER5A DNA MER1_type -118 71 12 1684 144 14 18 chr1 24782659 24782936 -257410728 - AluJb SINE Alu -14 298 23 2474 67 0 3 chr1 24782942 24783242 -257410422 - AluY SINE Alu -12 299 1 370 208 104 0 chr1 24784020 24784116 -257409548 - L2 LINE L2 -7 3306 3201 1918 139 38 0 chr1 24784398 24784685 -257408979 + AluJo SINE Alu 1 298 -14 428 259 18 9 chr1 24784758 24784870 -257408794 - MIR3 SINE MIR -7 201 89 299 338 41 28 chr1 24784990 24785135 -257408529 + LTR16C LTR ERVL 162 308 -183 859 150 69 19 chr1 24785136 24785296 -257408368 - AluJo SINE Alu -27 285 118 398 215 13 0 chr1 24785297 24785376 -257408288 + LTR16C LTR ERVL 382 461 -30 258 104 39 117 chr1 24785379 24785456 -257408208 - MIR SINE MIR -118 90 20 927 207 53 5 chr1 24785456 24785664 -257408000 - MER20 DNA MER1_type 0 219 2 192 375 52 0 chr1 24786549 24786645 -257407019 + L2 LINE L2 3213 3313 0 372 270 35 26 chr1 24787190 24787305 -257406359 - MIR SINE MIR -60 202 87 186 258 15 61 chr1 24788828 24788894 -257404770 - MIR SINE MIR -68 140 78 2214 109 0 0 chr1 24789215 24789517 -257404147 - AluSx SINE Alu -10 302 1 211 260 77 39 chr1 24789615 24789719 -257403945 + L2 LINE L2 2941 3048 -224 466 257 71 0 chr1 24789789 24789902 -257403762 - L2 LINE L2 -1 3312 3192 469 313 80 36 chr1 24790028 24790252 -257403412 + MIR SINE MIR 17 250 -12 787 262 52 4 chr1 24790947 24791195 -257402469 + MIR SINE MIR 1 260 -2 430 296 47 24 chr1 24791233 24791402 -257402262 - MIR SINE MIR -48 214 42 273 308 15 45 chr1 24791582 24791715 -257401949 + G-rich Low_complexity Low_complexity 1 129 0 1800 165 0 3 chr1 24792242 24792539 -257401125 - AluJb SINE Alu -16 296 1 738 196 143 24 chr1 24792721 24792930 -257400734 - MIR SINE MIR -16 246 13 1889 129 11 0 chr1 24793675 24793962 -257399702 - AluSx SINE Alu -22 290 1 305 266 115 23 chr1 24795504 24795722 -257397942 + L2 LINE L2 2854 3091 -181 181 250 0 0 chr1 24796386 24796430 -257397234 + MIR SINE MIR 110 153 -109 183 200 0 0 chr1 24797007 24797042 -257396622 - L2 LINE L2 -99 3173 3139 1817 146 4 4 chr1 24797304 24797614 -257396050 - AluSx SINE Alu 0 310 1 2258 70 3 0 chr1 24797717 24798002 -257395662 + AluY SINE Alu 1 286 -25 1646 65 5 0 chr1 24798103 24798317 -257395347 + AluY SINE Alu 97 311 0 2385 63 3 3 chr1 24798361 24798662 -257395002 + AluY SINE Alu 1 301 -10 279 226 0 0 chr1 24798824 24798877 -257394787 + MIR SINE MIR 60 112 -150 697 243 151 37 chr1 24799626 24799844 -257393820 + MIR SINE MIR 5 247 -15 232 347 7 40 chr1 24800750 24800900 -257392764 - L2 LINE L2 -448 2866 2722 1765 121 26 18 chr1 24800999 24801272 -257392392 - L1PB4 LINE L1 -5 6151 5877 198 171 0 0 chr1 24801327 24801368 -257392296 + T-rich Low_complexity Low_complexity 1 41 0 1606 103 4 65 chr1 24801368 24801487 -257392177 - AluSq SINE Alu -63 250 154 2022 84 0 81 chr1 24801487 24801810 -257391854 - AluSx SINE Alu -15 297 1 1606 103 4 65 chr1 24801810 24801952 -257391712 - AluSq SINE Alu -159 154 5 289 262 252 0 chr1 24802229 24802336 -257391328 + MIR3 SINE MIR 13 146 -62 322 239 31 33 chr1 24802405 24802503 -257391161 + MIR3 SINE MIR 100 193 -15 1013 130 50 0 chr1 24802577 24802738 -257390926 - MER20 DNA MER1_type -4 215 47 24 0 0 0 chr1 24802751 24802775 -257390889 + AT_rich Low_complexity Low_complexity 1 24 0 1818 155 0 17 chr1 24802994 24803291 -257390373 + AluJb SINE Alu 1 292 -20 314 240 42 49 chr1 24803339 24803477 -257390187 + L1ME LINE L1 5690 5807 -314 1639 144 6 35 chr1 24803477 24803789 -257389875 + AluJo SINE Alu 1 303 -9 314 240 42 49 chr1 24803789 24803801 -257389863 + L1ME LINE L1 5807 5818 -303 537 138 12 0 chr1 24803858 24803938 -257389726 - MER2 DNA MER2_type -264 81 1 222 220 231 11 chr1 24804017 24804108 -257389556 + MIR SINE MIR 41 151 -111 775 130 0 0 chr1 24804110 24804218 -257389446 + Tigger7 DNA MER2_type 3 110 -595 1628 169 10 7 chr1 24804218 24804526 -257389138 - AluSq SINE Alu -4 309 1 1041 149 0 0 chr1 24806521 24806695 -257386969 - AluSg/x SINE Alu -5 307 134 24 53 0 0 chr1 24806864 24806902 -257386762 + AT_rich Low_complexity Low_complexity 1 38 0 905 182 67 6 chr1 24807154 24807319 -257386345 + FAM SINE Alu 1 175 0 570 267 113 10 chr1 24809574 24809769 -257383895 - MIR SINE MIR -30 232 18 1669 166 0 13 chr1 24810527 24810829 -257382835 + AluJb SINE Alu 2 299 -13 391 214 233 0 chr1 24811045 24811148 -257382516 - MER5A DNA MER1_type 0 189 63 2683 152 116 43 chr1 24811158 24811763 -257381901 - L1MB7 LINE L1 0 6184 5536 839 214 46 12 chr1 24813209 24813346 -257380318 - MLT1F1 LTR MaLR -8 559 428 1786 127 0 34 chr1 24813346 24813637 -257380027 + AluJo SINE Alu 1 281 -31 839 214 46 12 chr1 24813637 24813928 -257379736 - MLT1F1 LTR MaLR -139 428 3 720 213 57 0 chr1 24814187 24814328 -257379336 + FAM SINE Alu 1 149 -36 2207 71 0 4 chr1 24814331 24814640 -257379024 - AluY SINE Alu 0 308 1 1013 87 0 53 chr1 24814640 24814790 -257378874 - AluSp SINE Alu -19 294 153 182 311 197 45 chr1 24815086 24815291 -257378373 - L2 LINE L2 -1314 2000 1827 886 193 0 0 chr1 24815291 24815441 -257378223 + FRAM SINE Alu 1 150 -16 182 311 197 45 chr1 24815441 24815763 -257377901 - L2 LINE L2 -1487 1827 1393 293 250 102 28 chr1 24815837 24815945 -257377719 + MER46C DNA MER2_type 63 178 -160 307 121 127 0 chr1 24815997 24816079 -257377585 + L1ME3A LINE L1 5825 5919 -251 186 133 0 0 chr1 24816337 24816367 -257377297 + (TG)n Simple_repeat Simple_repeat 2 31 0 274 243 122 0 chr1 24816534 24816608 -257377056 - MIR SINE MIR -73 189 107 1667 171 20 3 chr1 24816940 24817233 -257376431 + AluSx SINE Alu 1 298 -14 2110 86 3 17 chr1 24817776 24818078 -257375586 - AluSc SINE Alu -11 298 1 1632 169 0 13 chr1 24818914 24819216 -257374448 + AluJb SINE Alu 2 299 -13 391 214 233 0 chr1 24819432 24819535 -257374129 - MER5A DNA MER1_type 0 189 63 2701 150 116 43 chr1 24819545 24820150 -257373514 - L1MB7 LINE L1 0 6184 5536 864 199 62 28 chr1 24821596 24821733 -257371931 - MLT1F1 LTR MaLR -8 559 428 1786 127 0 34 chr1 24821733 24822024 -257371640 + AluJo SINE Alu 1 281 -31 864 199 62 28 chr1 24822024 24822315 -257371349 - MLT1F1 LTR MaLR -139 428 3 720 213 57 0 chr1 24822574 24822715 -257370949 + FAM SINE Alu 1 149 -36 2327 81 3 0 chr1 24822717 24823014 -257370650 - AluSx SINE Alu -14 298 1 366 254 127 0 chr1 24823081 24823191 -257370473 - L2 LINE L2 -459 2855 2732 939 264 137 48 chr1 24823201 24823617 -257370047 + L2 LINE L2 2859 3311 -2 2366 61 0 0 chr1 24823836 24824130 -257369534 + AluY SINE Alu 1 294 -17 517 205 105 12 chr1 24824157 24824268 -257369396 - L1MC4 LINE L1 -2 8040 7941 273 98 0 0 chr1 24824268 24824309 -257369355 + (TG)n Simple_repeat Simple_repeat 2 42 0 517 205 105 12 chr1 24824309 24824458 -257369206 - L1MC4 LINE L1 -101 7941 7693 476 97 28 0 chr1 24824465 24824537 -257369127 - AluSp/q SINE Alu -8 305 232 1601 164 4 0 chr1 24824558 24824832 -257368832 - AluJo SINE Alu -37 275 1 348 228 179 24 chr1 24824843 24824966 -257368698 - L1MC4 LINE L1 -314 7728 7587 1018 150 251 8 chr1 24824966 24825213 -257368451 - AluSg1 SINE Alu -2 307 1 859 150 123 0 chr1 24825215 24825437 -257368227 - L1MC4 LINE L1 -749 7293 6976 1701 153 17 11 chr1 24825854 24826141 -257367523 + AluJo SINE Alu 1 289 -23 853 202 109 54 chr1 24826200 24826569 -257367095 + MER31-int LTR ERV1 3650 4107 -829 2182 105 0 0 chr1 24826569 24826864 -257366800 - AluSg SINE Alu -15 295 1 2469 43 0 0 chr1 24826870 24827170 -257366494 - AluYa5 SINE Alu -11 300 1 2920 106 2 54 chr1 24827196 24827640 -257366024 - MER1A DNA MER1_type -108 421 1 220 250 0 0 chr1 24827729 24827781 -257365883 + MIR3 SINE MIR 151 202 -6 2358 56 0 7 chr1 24827788 24828092 -257365572 + AluY SINE Alu 1 302 -9 2392 73 0 0 chr1 24828471 24828772 -257364892 + AluY SINE Alu 1 301 -10 2117 117 0 0 chr1 24828793 24829092 -257364572 + AluSx SINE Alu 1 299 -13 1935 138 6 3 chr1 24829794 24830106 -257363558 - AluSq SINE Alu 0 313 1 635 111 194 0 chr1 24830137 24830245 -257363419 - FLAM_C SINE Alu -10 133 5 2053 105 13 19 chr1 24830272 24830587 -257363077 - AluSq SINE Alu 0 313 1 21 36 0 0 chr1 24830590 24830618 -257363046 + AT_rich Low_complexity Low_complexity 1 28 0 182 171 24 0 chr1 24830835 24830876 -257362788 + CT-rich Low_complexity Low_complexity 2 43 0 1383 118 0 0 chr1 24830883 24831087 -257362577 - AluSg/x SINE Alu -37 275 72 1520 151 9 89 chr1 24831145 24831328 -257362336 - AluJo SINE Alu -1 311 166 1672 89 12 32 chr1 24831328 24831574 -257362090 - AluSp SINE Alu -38 275 35 1520 151 9 89 chr1 24831574 24831728 -257361936 - AluJo SINE Alu -146 166 1 2239 97 0 0 chr1 24832454 24832753 -257360911 - AluSg SINE Alu -11 299 1 1545 187 17 17 chr1 24833077 24833371 -257360293 + AluJb SINE Alu 1 294 -18 1511 205 10 10 chr1 24833864 24834171 -257359493 - AluJo SINE Alu -5 307 1 2045 115 0 0 chr1 24834208 24834520 -257359144 + AluSx SINE Alu 1 312 0 791 295 106 59 chr1 24834590 24834995 -257358669 + L2 LINE L2 2554 2938 -375 776 143 0 30 chr1 24834995 24835128 -257358536 - FLAM_C SINE Alu 0 133 5 791 295 106 59 chr1 24835128 24835289 -257358375 + L2 LINE L2 2938 3090 -223 1835 130 0 7 chr1 24835289 24835596 -257358068 - AluSx SINE Alu 0 311 7 791 295 106 59 chr1 24835596 24835742 -257357922 + L2 LINE L2 3090 3300 -13 2114 114 7 0 chr1 24836208 24836505 -257357159 - AluSq SINE Alu -14 299 1 1402 190 0 46 chr1 24836836 24837141 -257356523 + AluJo SINE Alu 1 291 -21 2428 50 0 0 chr1 24837854 24838152 -257355512 - AluY SINE Alu -13 298 1 25 83 0 0 chr1 24838235 24838295 -257355369 + AT_rich Low_complexity Low_complexity 1 60 0 21 0 0 0 chr1 24838338 24838359 -257355305 + AT_rich Low_complexity Low_complexity 1 21 0 217 0 0 0 chr1 24838419 24838443 -257355221 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 2271 75 0 0 chr1 24838443 24838724 -257354940 - AluY SINE Alu -1 304 1 36 40 0 0 chr1 24838791 24838841 -257354823 + AT_rich Low_complexity Low_complexity 1 50 0 823 180 0 22 chr1 24838841 24838980 -257354684 - AluJb SINE Alu -176 136 1 2348 104 0 0 chr1 24840475 24840772 -257352892 + AluSx SINE Alu 1 297 -15 24 53 0 0 chr1 24840806 24840844 -257352820 + AT_rich Low_complexity Low_complexity 1 38 0 342 363 78 16 chr1 24841638 24841831 -257351833 + L2 LINE L2 294 498 -2816 2348 68 14 0 chr1 24841833 24842126 -257351538 - AluSp SINE Alu -16 297 1 255 274 116 0 chr1 24842173 24842319 -257351345 + MER112 DNA MER1_type 39 201 -59 393 324 80 33 chr1 24842352 24842713 -257350951 + L2 LINE L2 505 882 -2432 1103 324 144 17 chr1 24842817 24843892 -257349772 - L2 LINE L2 0 3313 2107 2171 110 10 0 chr1 24845007 24845308 -257348356 - AluSg SINE Alu -6 304 1 2254 82 7 0 chr1 24845542 24845834 -257347830 - AluY SINE Alu -17 294 1 844 164 21 0 chr1 24846677 24846817 -257346847 - FAM SINE Alu -7 42 1 302 177 25 25 chr1 24847563 24847642 -257346022 - HsTC2 DNA Tc2 -36 1862 1784 2487 87 0 0 chr1 24847701 24848013 -257345651 - AluSx SINE Alu 0 312 1 1402 232 99 22 chr1 24848014 24848510 -257345154 - L1MC4a LINE L1 -1979 5829 5296 200 194 0 0 chr1 24852148 24852184 -257341480 + GA-rich Low_complexity Low_complexity 3 38 0 24 53 0 0 chr1 24853450 24853488 -257340176 + AT_rich Low_complexity Low_complexity 1 38 0 27 0 0 0 chr1 24855638 24855665 -257337999 + AT_rich Low_complexity Low_complexity 1 27 0 266 0 29 0 chr1 24856389 24856423 -257337241 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 24 0 0 0 chr1 24858292 24858316 -257335348 + AT_rich Low_complexity Low_complexity 1 24 0 1791 158 3 3 chr1 24859780 24860065 -257333599 + AluJo SINE Alu 9 293 -19 2334 52 0 14 chr1 24860411 24860722 -257332942 - AluY SINE Alu 0 307 1 406 255 248 7 chr1 24861306 24861451 -257332213 - MER5A DNA MER1_type -1 188 9 959 130 338 14 chr1 24861923 24862139 -257331525 + AluSg1 SINE Alu 1 286 -23 213 234 21 0 chr1 24862523 24862570 -257331094 - L2 LINE L2 -18 3295 3248 1651 91 159 29 chr1 24862860 24863136 -257330528 - AluSx SINE Alu 0 312 1 1968 131 7 3 chr1 24863165 24863463 -257330201 + AluSx SINE Alu 1 299 -13 419 262 56 94 chr1 24863723 24863956 -257329708 - MIR SINE MIR -27 235 12 1954 150 7 3 chr1 24864202 24864495 -257329169 + AluJb SINE Alu 1 294 -18 232 189 0 0 chr1 24864553 24864606 -257329058 + FLAM_A SINE Alu 80 132 -1 2020 128 3 0 chr1 24864658 24864947 -257328717 - AluSx SINE Alu -16 296 7 2192 92 7 7 chr1 24865179 24865473 -257328191 - AluSx SINE Alu -15 297 4 2110 146 0 3 chr1 24865548 24865849 -257327815 + AluSx SINE Alu 1 300 -12 21 36 0 0 chr1 24866817 24866845 -257326819 + AT_rich Low_complexity Low_complexity 1 28 0 1647 168 42 25 chr1 24867401 24867687 -257325977 + AluJb SINE Alu 1 291 -21 283 313 212 11 chr1 24867786 24867965 -257325699 - MIR SINE MIR -16 246 32 730 126 0 77 chr1 24867970 24868113 -257325551 - FLAM_C SINE Alu -1 132 1 2299 101 0 10 chr1 24868913 24869220 -257324444 + AluSq SINE Alu 1 304 -9 1923 118 0 81 chr1 24869287 24869610 -257324054 + AluSg SINE Alu 1 297 -13 897 102 0 0 chr1 24869611 24869729 -257323935 + AluSq SINE Alu 133 250 -63 198 171 0 0 chr1 24869729 24869770 -257323894 + A-rich Low_complexity Low_complexity 1 41 0 1707 121 26 18 chr1 24869825 24870098 -257323566 + L1PB4 LINE L1 5877 6151 -5 220 303 65 39 chr1 24870197 24870352 -257323312 + L2 LINE L2 2722 2880 -434 669 243 151 37 chr1 24871252 24871470 -257322194 - MIR SINE MIR -15 247 5 278 226 0 0 chr1 24872219 24872272 -257321392 - MIR SINE MIR -150 112 60 2442 66 3 7 chr1 24872434 24872736 -257320928 - AluY SINE Alu -10 301 1 855 135 7 28 chr1 24872736 24872877 -257320787 - AluSq/x SINE Alu -175 138 1 1906 137 0 7 chr1 24873015 24873299 -257320365 - AluSx SINE Alu -30 282 1 187 259 49 37 chr1 24873914 24873995 -257319669 - L2 LINE L2 0 3272 3191 312 269 90 0 chr1 24874434 24874512 -257319152 - L2 LINE L2 -50 3263 3179 464 188 116 22 chr1 24875636 24875774 -257317890 - MIR SINE MIR -12 250 100 21 0 0 0 chr1 24875984 24876005 -257317659 + AT_rich Low_complexity Low_complexity 1 21 0 257 263 0 0 chr1 24876532 24876589 -257317075 - MIR SINE MIR -2 260 204 293 132 0 38 chr1 24876592 24876645 -257317019 + AluJ/FLAM SINE Alu 14 64 -238 249 191 64 0 chr1 24876700 24876747 -257316917 - MIR SINE MIR -119 143 94 2111 151 0 0 chr1 24879115 24879426 -257314238 - AluSx SINE Alu -1 311 1 1042 141 18 0 chr1 24881427 24881597 -257312067 - AluSc SINE Alu -5 304 132 24 53 0 0 chr1 24881766 24881804 -257311860 + AT_rich Low_complexity Low_complexity 1 38 0 886 174 68 6 chr1 24882056 24882217 -257311447 + FAM SINE Alu 1 171 -4 656 155 0 0 chr1 24935283 24935386 -257258278 + MER46A DNA MER2_type 45 147 -89 2042 115 35 10 chr1 24936007 24936295 -257257369 - AluSg SINE Alu -15 295 1 2425 78 3 0 chr1 24937027 24937320 -257256344 - AluSq SINE Alu -19 294 1 32 75 0 0 chr1 24937324 24937391 -257256273 + AT_rich Low_complexity Low_complexity 1 67 0 2385 59 3 3 chr1 24937401 24937690 -257255974 - AluY SINE Alu -16 295 7 479 253 136 40 chr1 24937738 24937936 -257255728 - MIR SINE MIR -6 256 40 544 214 10 0 chr1 24938546 24938644 -257255020 + MER81 DNA DNA 2 100 -14 396 0 0 0 chr1 24939032 24939076 -257254588 + (CAT)n Simple_repeat Simple_repeat 3 46 0 536 281 68 11 chr1 24939335 24939533 -257254131 - MIR SINE MIR -47 215 8 189 277 32 64 chr1 24939514 24939608 -257254056 + L2 LINE L2 3180 3270 -2 * 273 315 67 0 chr1 24940012 24940101 -257253563 + MIR SINE MIR 50 144 -118 345 329 202 18 chr1 24941484 24941995 -257251669 + L2 LINE L2 1942 2546 -768 247 296 42 0 chr1 24941985 24942056 -257251608 + MIR SINE MIR 31 104 -158 * 230 242 32 16 chr1 24942061 24942123 -257251541 - L3 LINE CR1 -350 1227 1165 2147 146 0 0 chr1 24942213 24942522 -257251142 - AluJb SINE Alu -3 309 1 323 284 91 0 chr1 24942523 24942611 -257251053 + HAL1 LINE L1 2147 2242 -265 2379 49 3 3 chr1 24942704 24942992 -257250672 + AluY SINE Alu 1 288 -23 252 0 0 0 chr1 24942993 24943021 -257250643 + (TA)n Simple_repeat Simple_repeat 1 28 0 718 208 56 19 chr1 24943022 24943238 -257250426 + HAL1 LINE L1 2278 2501 -6 402 288 26 0 chr1 24943252 24943405 -257250259 + L1ME LINE L1 5599 5755 -366 1001 200 0 0 chr1 24943407 24943567 -257250097 + FRAM SINE Alu 1 160 -6 1740 154 85 3 chr1 24943604 24943922 -257249742 + MER7A DNA MER2_type 1 342 -4 1214 84 0 7 chr1 24943995 24944149 -257249515 + AluSx SINE Alu 1 153 -159 2108 135 35 11 chr1 24944191 24944562 -257249102 - L1MB2 LINE L1 -3 6168 5789 193 303 131 86 chr1 24944765 24944909 -257248755 - MIR SINE MIR 0 262 107 2249 77 0 95 chr1 24944909 24945245 -257248419 - AluSq SINE Alu -9 304 1 193 303 131 86 chr1 24945245 24945275 -257248389 - MIR SINE MIR -155 107 80 1962 132 30 7 chr1 24945592 24945896 -257247768 + AluJb SINE Alu 1 311 -1 1034 163 36 50 chr1 24946114 24946335 -257247329 + MER20 DNA MER1_type 2 219 0 1896 153 23 10 chr1 24946384 24946692 -257246972 - AluJb SINE Alu 0 312 1 2253 128 0 0 chr1 24946693 24946997 -257246667 - AluSx SINE Alu -8 304 1 253 266 57 65 chr1 24947188 24947312 -257246352 - MIR SINE MIR -62 146 24 292 287 0 28 chr1 24947723 24947831 -257245833 - MIR SINE MIR 0 262 158 1619 141 15 41 chr1 24948066 24948336 -257245328 - AluJo SINE Alu 0 312 50 2211 129 0 3 chr1 24948356 24948666 -257244998 - AluSg SINE Alu -1 309 1 386 207 60 43 chr1 24948721 24948837 -257244827 - MIR SINE MIR -55 153 36 304 253 11 0 chr1 24949507 24949594 -257244070 + LTR33 LTR ERVL 5 92 -429 250 350 0 0 chr1 24950143 24950283 -257243381 + (TG)n Simple_repeat Simple_repeat 1 140 0 207 0 0 0 chr1 24950397 24950420 -257243244 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 2220 124 3 3 chr1 24950659 24950958 -257242706 + AluSx SINE Alu 1 299 -13 1675 182 10 19 chr1 24951822 24952124 -257241540 + AluJo SINE Alu 1 300 -8 459 0 0 0 chr1 24952124 24952175 -257241489 + (CATA)n Simple_repeat Simple_repeat 2 52 0 438 214 75 107 chr1 24952527 24952714 -257240950 - MIR SINE MIR -81 181 1 601 211 112 6 chr1 24953148 24953309 -257240355 + MIR3 SINE MIR 16 193 -15 316 237 263 9 chr1 24953373 24953407 -257240257 + MER5A DNA MER1_type 41 65 -124 2029 155 20 0 chr1 24953407 24953704 -257239960 + AluSx SINE Alu 1 303 -9 316 237 263 9 chr1 24953704 24953783 -257239881 + MER5A DNA MER1_type 65 183 -6 224 219 0 0 chr1 24953881 24953922 -257239742 + L2 LINE L2 3225 3265 -7 870 235 55 42 chr1 24953990 24954228 -257239436 + MIR SINE MIR 22 262 0 765 159 185 51 chr1 24954391 24954485 -257239179 - MER33 DNA MER1_type -2261 324 244 2267 104 7 13 chr1 24954485 24954794 -257238870 + AluSx SINE Alu 1 307 -5 765 159 185 51 chr1 24954794 24954975 -257238689 - MER33 DNA MER1_type -2341 244 12 490 241 43 9 chr1 24954980 24955096 -257238568 + MIR3 SINE MIR 47 166 -42 216 0 0 0 chr1 24955135 24955159 -257238505 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 2358 112 3 0 chr1 24955183 24955495 -257238169 - AluSq SINE Alu 0 313 1 1007 128 7 0 chr1 24955496 24955637 -257238027 - AluJo SINE Alu -170 142 1 2302 106 3 7 chr1 24955722 24956025 -257237639 + AluSx SINE Alu 1 302 -10 318 300 56 67 chr1 24956244 24956361 -257237303 - MER5B DNA MER1_type 0 178 62 2116 111 3 36 chr1 24956361 24956668 -257236996 - AluSx SINE Alu -15 297 1 318 300 56 67 chr1 24956668 24956730 -257236934 - MER5B DNA MER1_type -116 62 1 617 253 19 19 chr1 24956730 24956884 -257236780 - MIR3 SINE MIR -48 160 7 518 278 78 95 chr1 24956928 24957455 -257236209 - L2 LINE L2 -46 3226 2688 2252 70 42 3 chr1 24957455 24957739 -257235925 + AluY SINE Alu 1 295 -16 518 278 78 95 chr1 24957739 24957866 -257235798 - L2 LINE L2 -584 2688 2560 2221 98 14 0 chr1 24957943 24958238 -257235426 + AluSq SINE Alu 1 299 -14 1005 216 151 65 chr1 24958264 24958386 -257235278 - MLT1H LTR MaLR -2 547 437 3416 116 10 4 chr1 24958386 24958893 -257234771 - L1PB1 LINE L1 -2 6149 5640 1005 216 151 65 chr1 24958893 24959201 -257234463 - MLT1H LTR MaLR -112 437 80 218 191 24 0 chr1 24959249 24959291 -257234373 + MIR SINE MIR 72 114 -94 217 298 0 0 chr1 24959300 24959357 -257234307 - MIR SINE MIR -87 175 119 2541 48 3 3 chr1 24959360 24959654 -257234010 + AluY SINE Alu 1 294 -17 893 87 8 0 chr1 24959654 24959780 -257233884 - THE1B LTR MaLR -40 324 198 835 147 15 29 chr1 24959786 24959922 -257233742 - FLAM_C SINE Alu -9 134 1 628 255 2 13 chr1 24959922 24960093 -257233571 - L1ME LINE L1 -404 5766 5601 1917 172 10 0 chr1 24960110 24960407 -257233257 - AluJo SINE Alu -12 300 1 2080 94 56 0 chr1 24960586 24960873 -257232791 + AluSx SINE Alu 1 303 -9 287 209 88 22 chr1 24960890 24960981 -257232683 - MIR SINE MIR -59 203 107 2041 131 13 19 chr1 24961392 24961730 -257231934 + AluSx SINE Alu 1 312 0 244 196 0 0 chr1 24961730 24961776 -257231888 - L2 LINE L2 -14 3258 3213 * 391 259 93 20 chr1 24961743 24961931 -257231733 - MIR SINE MIR -21 241 38 1888 158 3 19 chr1 24961932 24962243 -257231421 + AluJb SINE Alu 1 306 -6 312 240 48 40 chr1 24962615 24962740 -257230924 - MLT1K LTR MaLR -308 280 155 737 175 0 0 chr1 24963111 24963255 -257230409 + FLAM_C SINE Alu 1 144 0 366 238 175 48 chr1 24963267 24963456 -257230208 - MIR SINE MIR -42 220 8 456 272 19 0 chr1 24963574 24963677 -257229987 - MIR SINE MIR -63 145 41 2097 142 0 16 chr1 24963781 24964092 -257229572 + AluSx SINE Alu 3 308 -4 1042 178 43 0 chr1 24964175 24964360 -257229304 + AluJo SINE Alu 120 312 0 1838 161 0 7 chr1 24964379 24964658 -257229006 + AluJo SINE Alu 11 287 -25 1465 90 147 19 chr1 24964658 24964869 -257228795 + AluSg SINE Alu 1 238 -72 635 281 58 46 chr1 24964892 24965370 -257228294 - L1ME3 LINE L1 -142 6028 5545 2381 50 40 24 chr1 24965397 24965695 -257227969 - AluY SINE Alu -8 303 1 687 135 0 0 chr1 24965700 24965796 -257227868 - FLAM_A SINE Alu -10 132 37 837 150 8 15 chr1 24965897 24966030 -257227634 - FLAM_C SINE Alu -1 132 1 2215 101 30 0 chr1 24966040 24966336 -257227328 - AluSx SINE Alu -7 305 1 354 294 121 16 chr1 24966969 24967161 -257226503 + MIR SINE MIR 51 261 -1 2288 101 10 0 chr1 24967324 24967622 -257226042 - AluSp SINE Alu -12 301 1 1769 147 3 43 chr1 24967658 24967958 -257225706 + AluJo SINE Alu 15 302 -10 245 246 0 0 chr1 24967979 24968040 -257225624 - MER21B LTR ERV1 -396 467 407 2272 103 7 0 chr1 24968049 24968340 -257225324 + AluSg SINE Alu 1 293 -17 180 77 0 0 chr1 24969353 24969379 -257224285 + (TTA)n Simple_repeat Simple_repeat 2 27 0 21 0 0 0 chr1 24970757 24970778 -257222886 + AT_rich Low_complexity Low_complexity 1 21 0 2359 97 10 0 chr1 24970925 24971225 -257222439 - AluSc SINE Alu -6 303 1 272 201 27 196 chr1 24972042 24972079 -257221585 + MIR SINE MIR 3 45 -217 2036 153 0 3 chr1 24972079 24972374 -257221290 + AluJb SINE Alu 10 303 -9 272 201 27 196 chr1 24972374 24972456 -257221208 + MIR SINE MIR 45 139 -123 2431 100 0 0 chr1 24972456 24972767 -257220897 - AluSq SINE Alu -2 311 1 1761 157 64 7 chr1 24972768 24973049 -257220615 - AluJb SINE Alu -15 297 1 272 201 27 196 chr1 24973049 24973110 -257220554 + MIR SINE MIR 138 155 -107 1613 147 122 4 chr1 24973295 24973574 -257220090 + AluJb SINE Alu 1 312 0 2224 122 0 0 chr1 24973992 24974287 -257219377 + AluJb SINE Alu 1 295 -17 2287 88 17 0 chr1 24974315 24974611 -257219053 + AluSp SINE Alu 1 301 -12 1148 168 0 0 chr1 24974865 24975038 -257218626 - FAM SINE Alu -2 173 1 212 360 97 57 chr1 24975105 24975280 -257218384 + L2 LINE L2 3081 3262 -10 * 821 252 106 18 chr1 24975259 24975485 -257218179 - MIR SINE MIR -1 261 16 286 237 182 4 chr1 24975542 24975671 -257217993 + MIR SINE MIR 16 177 -61 330 26 0 0 chr1 24975759 24975798 -257217866 + (CA)n Simple_repeat Simple_repeat 2 40 0 195 290 32 16 chr1 24976239 24976301 -257217363 - MIR3 SINE MIR 0 208 146 497 255 0 0 chr1 24976347 24976453 -257217211 - MIR SINE MIR -96 166 61 1938 171 0 3 chr1 24976453 24976758 -257216906 + AluJb SINE Alu 4 307 -5 2235 93 0 27 chr1 24976875 24977176 -257216488 - AluSc SINE Alu -12 297 5 2279 108 10 3 chr1 24977251 24977558 -257216106 - AluSq SINE Alu -4 309 1 367 76 0 0 chr1 24977633 24977688 -257215976 + Alu SINE Alu 1 48 -253 293 283 40 0 chr1 24977709 24977808 -257215856 - MIR SINE MIR -63 145 49 493 335 98 36 chr1 24977911 24978186 -257215478 - L3 LINE CR1 -299 1278 987 375 242 32 0 chr1 24978195 24978290 -257215374 - L2 LINE L2 -23 3290 3193 312 223 54 54 chr1 24978331 24978378 -257215286 - MIR3 SINE MIR -8 200 154 2258 106 3 0 chr1 24978378 24978670 -257214994 - AluSx SINE Alu -19 293 1 312 223 54 54 chr1 24978670 24978734 -257214930 - MIR3 SINE MIR -53 155 89 1524 149 0 0 chr1 24979037 24979258 -257214406 + AluJb SINE Alu 1 221 -91 197 62 0 31 chr1 24979283 24979315 -257214349 + (CATATA)n Simple_repeat Simple_repeat 2 32 0 186 328 0 0 chr1 24979344 24979408 -257214256 + MIR SINE MIR 3 66 -196 244 326 89 48 chr1 24979717 24979986 -257213678 - L2 LINE L2 -364 2950 2665 2245 125 0 0 chr1 24979986 24980289 -257213375 + AluSx SINE Alu 1 303 -9 244 326 89 48 chr1 24980289 24980332 -257213332 - L2 LINE L2 -649 2665 2625 620 278 28 91 chr1 24980618 24980724 -257212940 + MIR SINE MIR 12 123 -139 2194 129 0 16 chr1 24980724 24981041 -257212623 - AluSx SINE Alu 0 312 1 620 278 28 91 chr1 24981041 24981186 -257212478 + MIR SINE MIR 123 247 -15 2426 84 0 13 chr1 24981413 24981722 -257211942 - AluY SINE Alu -5 306 2 1281 192 120 8 chr1 24981723 24981989 -257211675 - AluSg SINE Alu -14 296 1 320 302 6 76 chr1 24982099 24982150 -257211514 - MIR SINE MIR -16 246 193 2509 96 3 0 chr1 24982150 24982462 -257211202 - AluSp SINE Alu 0 313 1 320 302 6 76 chr1 24982462 24982582 -257211082 - MIR SINE MIR -69 193 87 2185 86 0 21 chr1 24982738 24983018 -257210646 + AluSg SINE Alu 37 310 0 737 266 20 62 chr1 24983192 24983230 -257210434 - MIR SINE MIR -26 236 198 2351 110 3 0 chr1 24983230 24983539 -257210125 + AluSx SINE Alu 1 310 -2 737 266 20 62 chr1 24983539 24983744 -257209920 - MIR SINE MIR -64 198 3 197 333 0 43 chr1 24984085 24984154 -257209510 - L2 LINE L2 -15 3298 3233 596 260 67 70 chr1 24984271 24984556 -257209108 - MLT1J1 LTR MaLR -149 297 14 2160 127 7 0 chr1 24984706 24984997 -257208667 + AluSx SINE Alu 1 293 -19 204 336 9 36 chr1 24985026 24985136 -257208528 + L3 LINE CR1 1397 1503 -74 230 299 60 0 chr1 24985205 24985272 -257208392 - L2 LINE L2 -25 3288 3218 523 356 64 9 chr1 24985296 24985515 -257208149 + MIR SINE MIR 8 238 -24 341 277 72 0 chr1 24985547 24985630 -257208034 + MIR SINE MIR 86 174 -88 21 36 0 0 chr1 24986056 24986084 -257207580 + GC_rich Low_complexity Low_complexity 1 28 0 250 302 44 46 chr1 24986243 24986391 -257207273 - MIR SINE MIR -53 155 4 1987 138 0 32 chr1 24986595 24986906 -257206758 + AluJo SINE Alu 2 302 -10 2329 99 0 10 chr1 24987420 24987722 -257205942 + AluSx SINE Alu 1 299 -13 511 216 0 10 chr1 24987780 24987882 -257205782 + MIR SINE MIR 21 121 -141 290 256 37 0 chr1 24987883 24987965 -257205699 + L2 LINE L2 3024 3108 -164 226 300 67 33 chr1 24988163 24988253 -257205411 - L2 LINE L2 -41 3231 3139 278 299 41 21 chr1 24988429 24988526 -257205138 - MIR SINE MIR -95 167 69 283 269 78 136 chr1 24988581 24988823 -257204841 + MIR SINE MIR 28 255 -7 279 0 0 0 chr1 24988824 24988855 -257204809 + (TGAA)n Simple_repeat Simple_repeat 2 32 0 2548 143 71 69 chr1 24989260 24989779 -257203885 + MLT2B1 LTR ERVL 1 520 0 1955 163 3 10 chr1 24990128 24990488 -257203176 + AluSx SINE Alu 1 358 0 1919 156 0 7 chr1 24990505 24990672 -257202992 - AluJo SINE Alu -7 305 138 2224 90 38 0 chr1 24990672 24990961 -257202703 + AluSg SINE Alu 9 308 -2 2127 133 0 3 chr1 24990970 24991279 -257202385 + AluSx SINE Alu 1 308 -4 1919 156 0 7 chr1 24991279 24991408 -257202256 - AluJo SINE Alu -182 130 1 696 195 85 14 chr1 24991658 24991839 -257201825 - MIR SINE MIR -28 234 41 181 130 0 37 chr1 24992630 24992684 -257200980 + (TA)n Simple_repeat Simple_repeat 1 52 0 1836 126 10 36 chr1 24992684 24992986 -257200678 - AluJb SINE Alu -18 294 1 2369 109 0 0 chr1 24993018 24993331 -257200333 + AluSq SINE Alu 1 313 0 284 294 56 16 chr1 24993361 24993487 -257200177 - MIR SINE MIR -27 235 105 261 0 0 0 chr1 24993784 24993813 -257199851 + (TG)n Simple_repeat Simple_repeat 2 30 0 417 264 18 42 chr1 24994139 24994306 -257199358 - MIR3 SINE MIR -29 179 17 285 221 35 23 chr1 24994329 24994415 -257199249 - MIR SINE MIR -13 249 163 1931 108 61 4 chr1 24994425 24994702 -257198962 - AluJb SINE Alu -13 299 7 219 271 8 34 chr1 24994991 24995109 -257198555 + G-rich Low_complexity Low_complexity 5 119 0 22 99 0 0 chr1 24995424 24995495 -257198169 + GC_rich Low_complexity Low_complexity 1 71 0 49 80 0 0 chr1 24995574 24995686 -257197978 + GC_rich Low_complexity Low_complexity 1 112 0 27 49 0 0 chr1 24995801 24995842 -257197822 + GC_rich Low_complexity Low_complexity 1 41 0 31 58 0 0 chr1 24995855 24995907 -257197757 + GC_rich Low_complexity Low_complexity 1 52 0 413 287 43 55 chr1 24997002 24997107 -257196557 - MIR SINE MIR -6 256 151 2359 82 10 7 chr1 24997107 24997412 -257196252 - AluSx SINE Alu -6 306 1 413 287 43 55 chr1 24997412 24997564 -257196100 - MIR SINE MIR -111 151 3 214 307 0 27 chr1 24997565 24997640 -257196024 + MIR SINE MIR 34 106 -102 210 71 0 0 chr1 24997708 24997736 -257195928 + (T)n Simple_repeat Simple_repeat 1 28 0 182 36 0 36 chr1 24998095 24998123 -257195541 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 1380 195 0 16 chr1 24998138 24998395 -257195269 - AluJb SINE Alu -59 253 1 646 157 0 0 chr1 24998416 24998529 -257195135 - L1ME1 LINE L1 -5 6161 6063 2438 59 10 0 chr1 24999281 24999571 -257194093 - AluY SINE Alu -18 293 1 459 130 0 0 chr1 24999759 24999828 -257193836 - U6 snRNA snRNA -34 73 5 377 212 186 0 chr1 24999851 24999964 -257193700 - MIR SINE MIR -84 178 45 1711 153 19 39 chr1 25000209 25000517 -257193147 - AluJo SINE Alu -10 302 1 2334 97 7 0 chr1 25000526 25000825 -257192839 - AluSg SINE Alu -9 301 1 665 168 0 0 chr1 25000974 25001081 -257192583 - U6 snRNA snRNA 0 107 1 1752 62 0 0 chr1 25001136 25001347 -257192317 + AluY SINE Alu 90 300 -11 1087 164 45 81 chr1 25001365 25001675 -257191989 - L1ME3A LINE L1 -5 6165 5867 2269 91 10 16 chr1 25001735 25002043 -257191621 - AluSg SINE Alu -4 306 1 657 147 54 23 chr1 25002169 25002298 -257191366 - FLAM_C SINE Alu -1 142 10 671 329 108 9 chr1 25002330 25002674 -257190990 + L2 LINE L2 2921 3298 -15 2344 102 0 3 chr1 25003776 25004081 -257189583 - AluSq SINE Alu -8 305 2 255 278 0 14 chr1 25004093 25004165 -257189499 - MIR SINE MIR -15 247 177 389 224 168 50 chr1 25004167 25004346 -257189318 - MIR SINE MIR -6 256 57 2486 58 0 3 chr1 25004433 25004726 -257188938 - AluY SINE Alu -19 292 1 1725 120 112 8 chr1 25004831 25005098 -257188566 - AluSg SINE Alu -13 297 3 2294 110 7 3 chr1 25005107 25005416 -257188248 - AluSg SINE Alu 0 310 1 1631 146 3 97 chr1 25005761 25005965 -257187699 - AluJo SINE Alu -21 291 70 270 0 0 0 chr1 25005965 25005995 -257187669 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2109 114 0 0 chr1 25005995 25006275 -257187389 - AluSx SINE Alu -31 281 2 1631 146 3 97 chr1 25006275 25006390 -257187274 - AluJo SINE Alu -240 72 1 1742 171 10 3 chr1 25006440 25006733 -257186931 - AluJb SINE Alu -17 295 1 286 275 104 44 chr1 25006885 25007067 -257186597 - MARNA DNA Mariner -287 299 107 2376 86 10 0 chr1 25007384 25007686 -257185978 - AluSx SINE Alu -7 305 1 903 122 115 27 chr1 25007973 25008121 -257185543 - AluSq SINE Alu -22 291 131 335 238 94 99 chr1 25008192 25008373 -257185291 - MIR SINE MIR -29 233 54 2273 58 0 41 chr1 25008957 25009248 -257184416 + AluY SINE Alu 27 305 -6 1368 158 19 46 chr1 25009248 25009507 -257184157 - AluJo SINE Alu -32 280 29 1744 197 39 6 chr1 25009507 25009863 -257183801 - L1ME1 LINE L1 -66 6100 5733 815 182 134 27 chr1 25009873 25010060 -257183604 - AluSg/x SINE Alu -32 278 72 261 0 0 0 chr1 25010093 25010122 -257183542 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2198 114 10 0 chr1 25010954 25011253 -257182411 + AluSq SINE Alu 1 302 -11 2253 115 3 0 chr1 25011758 25012062 -257181602 - AluSg SINE Alu -5 305 1 454 286 201 5 chr1 25012064 25012263 -257181401 - MIR SINE MIR -5 257 20 2234 112 3 3 chr1 25012441 25012744 -257180920 + AluSx SINE Alu 1 303 -9 2407 65 38 0 chr1 25013800 25014092 -257179572 - AluSc SINE Alu -6 303 1 23 0 0 0 chr1 25014655 25014678 -257178986 + AT_rich Low_complexity Low_complexity 1 23 0 1579 190 18 3 chr1 25014678 25014962 -257178702 - AluJb SINE Alu -4 308 21 216 286 82 71 chr1 25015582 25015680 -257177984 + MIR SINE MIR 52 150 -58 801 110 0 52 chr1 25016147 25016283 -257177381 - FLAM_C SINE Alu 0 143 15 2303 111 0 3 chr1 25016319 25016626 -257177038 - AluSx SINE Alu -6 306 1 2421 60 0 0 chr1 25016656 25016969 -257176695 - AluY SINE Alu 0 313 1 1826 139 14 11 chr1 25016980 25017261 -257176403 - AluJb SINE Alu -22 290 9 436 217 203 7 chr1 25017269 25017412 -257176252 - MIR SINE MIR -70 192 22 2185 84 47 0 chr1 25017469 25017744 -257175920 + AluSc SINE Alu 1 288 -21 667 245 55 19 chr1 25017900 25018012 -257175652 + MIR SINE MIR 37 143 -119 2277 102 0 10 chr1 25018012 25018316 -257175348 + AluSq SINE Alu 1 301 -12 667 245 55 19 chr1 25018316 25018422 -257175242 + MIR SINE MIR 143 262 0 1842 140 16 32 chr1 25018584 25018892 -257174772 + AluJb SINE Alu 1 303 -9 639 293 35 13 chr1 25019827 25020056 -257173608 + MIR SINE MIR 2 235 -27 2023 142 7 0 chr1 25020478 25020780 -257172884 + AluSg SINE Alu 1 304 -6 780 149 0 25 chr1 25020780 25020901 -257172763 - AluJo/FLAM SINE Alu -184 118 1 392 169 0 16 chr1 25020972 25021033 -257172631 - Tigger2a DNA MER2_type -2274 444 373 459 0 0 0 chr1 25021033 25021084 -257172580 + (TG)n Simple_repeat Simple_repeat 2 52 0 1591 179 6 54 chr1 25021491 25021640 -257172024 + AluJo SINE Alu 1 129 -183 2321 84 7 7 chr1 25021640 25021938 -257171726 + AluSp SINE Alu 2 299 -14 1591 179 6 54 chr1 25021938 25022101 -257171563 + AluJo SINE Alu 129 298 -14 1876 140 84 45 chr1 25023751 25023818 -257169846 - Tigger2a DNA MER2_type -2337 371 308 1676 197 0 7 chr1 25023818 25024108 -257169556 - AluJo SINE Alu -13 299 12 1876 140 84 45 chr1 25024108 25024396 -257169268 - Tigger2a DNA MER2_type -2400 308 2 452 139 26 9 chr1 25024672 25024764 -257168900 + (TA)n Simple_repeat Simple_repeat 2 98 -20 2172 117 17 0 chr1 25024764 25025064 -257168600 - AluSx SINE Alu -7 305 1 452 139 26 9 chr1 25025064 25025086 -257168578 + (TA)n Simple_repeat Simple_repeat 98 118 0 336 24 0 0 chr1 25025086 25025127 -257168537 + (CA)n Simple_repeat Simple_repeat 2 42 0 4136 142 60 51 chr1 25025127 25025511 -257168153 - L1MB7 LINE L1 -28 6156 5777 2079 126 3 14 chr1 25025511 25025804 -257167860 + AluSx SINE Alu 1 290 -22 4136 142 60 51 chr1 25025804 25026132 -257167532 - L1MB7 LINE L1 -407 5777 5429 2248 119 0 0 chr1 25026132 25026426 -257167238 - AluSq SINE Alu -19 294 1 4136 142 60 51 chr1 25026426 25026667 -257166997 - L1MB7 LINE L1 -755 5429 5192 339 319 43 21 chr1 25026838 25026850 -257166814 + MIR3 SINE MIR 30 40 -168 2442 52 0 33 chr1 25026850 25027155 -257166509 - AluY SINE Alu -13 298 4 339 319 43 21 chr1 25027155 25027283 -257166381 + MIR3 SINE MIR 40 173 -35 423 0 0 0 chr1 25027442 25027489 -257166175 + (TG)n Simple_repeat Simple_repeat 2 48 0 466 83 0 0 chr1 25027499 25027559 -257166105 - Alu SINE Alu -248 61 2 226 387 0 21 chr1 25027770 25027863 -257165801 - MIR3 SINE MIR -116 92 2 24 0 0 0 chr1 25028024 25028048 -257165616 + AT_rich Low_complexity Low_complexity 1 24 0 681 155 75 18 chr1 25028490 25028682 -257164982 + MER46C DNA MER2_type 92 334 -4 1197 94 29 6 chr1 25028793 25028964 -257164700 + L1PA11 LINE L1 6000 6174 0 1886 154 0 13 chr1 25028989 25029288 -257164376 - AluJb SINE Alu -17 295 1 1758 169 0 10 chr1 25029291 25029586 -257164078 - AluJo SINE Alu -20 292 1 573 207 193 7 chr1 25029609 25029754 -257163910 - MER58B DNA MER1_type -1 340 169 822 267 159 22 chr1 25029795 25029981 -257163683 - L1MC4 LINE L1 -458 7584 7425 2069 137 0 0 chr1 25029981 25030304 -257163360 - AluSx SINE Alu 0 323 1 822 267 159 22 chr1 25030304 25030475 -257163189 - L1MC4 LINE L1 -617 7425 7177 29 0 0 0 chr1 25030513 25030542 -257163122 + AT_rich Low_complexity Low_complexity 1 29 0 281 250 220 53 chr1 25030956 25031256 -257162408 - L1MC4 LINE L1 -3 8039 7690 254 220 0 0 chr1 25031552 25031602 -257162062 + L2 LINE L2 3254 3303 -10 316 182 15 61 chr1 25031733 25031799 -257161865 + AluJo SINE Alu 84 146 -156 2308 99 0 0 chr1 25031799 25032106 -257161558 + AluSx SINE Alu 1 307 0 845 237 82 88 chr1 25032199 25032537 -257161127 - L2 LINE L2 -16 3297 2961 2450 87 0 6 chr1 25032537 25032849 -257160815 - AluSx SINE Alu -2 310 1 845 237 82 88 chr1 25032849 25033007 -257160657 - L2 LINE L2 -352 2961 2804 875 158 0 0 chr1 25033121 25033254 -257160410 + FLAM_C SINE Alu 1 133 0 27 0 0 0 chr1 25033854 25033881 -257159783 + AT_rich Low_complexity Low_complexity 1 27 0 2249 100 3 3 chr1 25034186 25034485 -257159179 - AluSp SINE Alu -14 299 1 2448 85 3 0 chr1 25035628 25035934 -257157730 - AluSg SINE Alu -3 307 1 2315 75 0 0 chr1 25035962 25036279 -257157385 + AluY SINE Alu 1 317 0 395 314 112 5 chr1 25036434 25036622 -257157042 + MIR SINE MIR 7 214 -48 403 333 69 11 chr1 25037144 25037333 -257156331 - L2 LINE L2 -15 3298 3099 623 176 9 0 chr1 25037339 25037447 -257156217 - FLAM_C SINE Alu -33 110 2 347 281 16 31 chr1 25037756 25037884 -257155780 + MER5A DNA MER1_type 64 189 0 225 0 0 0 chr1 25037928 25037953 -257155711 + (CAGG)n Simple_repeat Simple_repeat 2 26 0 455 251 126 29 chr1 25039416 25039591 -257154073 + MIR3 SINE MIR 17 208 0 2436 84 0 0 chr1 25040274 25040573 -257153091 - AluSg SINE Alu -11 299 1 237 217 0 72 chr1 25041583 25041652 -257152012 - L2 LINE L2 -2 3311 3248 222 62 0 0 chr1 25041738 25041770 -257151894 + (TTAA)n Simple_repeat Simple_repeat 3 34 0 2277 106 0 0 chr1 25041770 25042053 -257151611 - AluSx SINE Alu -27 285 3 1786 160 21 7 chr1 25042067 25042348 -257151316 - AluJb SINE Alu -27 285 1 215 246 105 26 chr1 25042982 25043096 -257150568 + MIR SINE MIR 95 217 -45 1586 150 55 29 chr1 25043128 25043402 -257150262 + AluJo SINE Alu 2 282 -30 1680 192 0 19 chr1 25043547 25043859 -257149805 + AluJb SINE Alu 6 311 -1 316 343 84 0 chr1 25044029 25044172 -257149492 - L2 LINE L2 -16 3256 3102 273 309 0 49 chr1 25044279 25044360 -257149304 - MIR SINE MIR -85 123 47 1053 124 0 0 chr1 25044388 25044533 -257149131 + FRAM SINE Alu 27 171 -5 2008 123 18 4 chr1 25045378 25045655 -257148009 - AluSx SINE Alu -21 291 11 2337 104 0 0 chr1 25045666 25045975 -257147689 - AluSg SINE Alu -1 309 1 22 0 0 0 chr1 25046255 25046277 -257147387 + GC_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr1 25046307 25046330 -257147334 + (GA)n Simple_repeat Simple_repeat 1 23 0 295 304 138 28 chr1 25046400 25046581 -257147083 - MIR SINE MIR -37 225 25 345 88 29 15 chr1 25047132 25047200 -257146464 + (TTTTC)n Simple_repeat Simple_repeat 3 71 0 1557 196 35 3 chr1 25047261 25047413 -257146251 - AluJo SINE Alu -18 294 148 1731 154 37 0 chr1 25047413 25047686 -257145978 - AluJo SINE Alu -29 283 1 1557 196 35 3 chr1 25047686 25047818 -257145846 - AluJo SINE Alu -164 148 1 2477 68 0 3 chr1 25047943 25048236 -257145428 + AluSx SINE Alu 1 292 -20 353 320 54 14 chr1 25048877 25049024 -257144640 - MIR3 SINE MIR -39 169 17 2165 225 112 59 chr1 25049684 25049881 -257143783 - L1ME LINE L1 -5084 986 801 2457 86 0 0 chr1 25049881 25050185 -257143479 - AluSc SINE Alu -5 304 1 2165 225 112 59 chr1 25050185 25050341 -257143323 - L1ME LINE L1 -5269 801 655 1720 143 7 55 chr1 25050341 25050672 -257142992 - AluJo SINE Alu 0 319 3 2165 225 112 59 chr1 25050672 25051209 -257142455 - L1ME LINE L1 -5415 655 47 361 241 9 17 chr1 25051278 25051394 -257142270 + MIR3 SINE MIR 72 186 -22 205 143 41 0 chr1 25051957 25052006 -257141658 + (TG)n Simple_repeat Simple_repeat 2 52 0 1621 185 0 34 chr1 25052218 25052516 -257141148 - AluJo SINE Alu -24 288 1 2271 112 0 0 chr1 25052564 25052867 -257140797 - AluSx SINE Alu -9 303 1 534 185 0 0 chr1 25052888 25052980 -257140684 + FLAM_C SINE Alu 37 128 -15 315 71 0 0 chr1 25053119 25053161 -257140503 + (TG)n Simple_repeat Simple_repeat 2 43 0 312 233 150 45 chr1 25053625 25053758 -257139906 + MIR SINE MIR 8 154 -108 289 299 126 31 chr1 25053861 25053946 -257139718 + MIR3 SINE MIR 58 160 -48 1916 147 39 25 chr1 25053946 25054301 -257139363 - MER46B DNA MER2_type -1 235 1 289 299 126 31 chr1 25054301 25054342 -257139322 + MIR3 SINE MIR 160 196 -12 491 246 194 0 chr1 25054983 25055158 -257138506 - MIR SINE MIR -3 259 51 1813 147 32 3 chr1 25055165 25055450 -257138214 - AluJo SINE Alu -11 301 9 2136 101 0 33 chr1 25055960 25056266 -257137398 - AluSx SINE Alu -16 296 1 1384 208 66 65 chr1 25056360 25057109 -257136555 - L2 LINE L2 -57 3256 2525 1957 146 0 22 chr1 25057145 25057460 -257136204 - AluJb SINE Alu 0 312 5 267 302 198 0 chr1 25057526 25057652 -257136012 + L3 LINE CR1 230 380 -1197 190 331 196 20 chr1 25057929 25058077 -257135587 + L3 LINE CR1 522 695 -882 23 0 0 0 chr1 25058152 25058175 -257135489 + AT_rich Low_complexity Low_complexity 1 23 0 568 261 206 10 chr1 25058191 25058390 -257135274 - MIR SINE MIR -23 239 2 226 287 9 46 chr1 25058424 25058532 -257135132 + L3 LINE CR1 899 1002 -575 247 242 95 21 chr1 25058559 25058654 -257135010 + L2 LINE L2 2544 2645 -669 287 333 0 12 chr1 25058966 25059050 -257134614 - L3 LINE CR1 -469 1108 1026 266 307 110 16 chr1 25059050 25059177 -257134487 - L2 LINE L2 0 3272 3134 2205 115 3 16 chr1 25059301 25059614 -257134050 + AluSx SINE Alu 1 309 -3 959 68 8 0 chr1 25059843 25059975 -257133689 + (TCCC)n Simple_repeat Simple_repeat 1 133 0 394 228 83 62 chr1 25059979 25060172 -257133492 - L2 LINE L2 -12 3301 3105 638 237 79 28 chr1 25060179 25060356 -257133308 + L3 LINE CR1 1390 1575 -2 1483 154 43 53 chr1 25060540 25060839 -257132825 + AluJo SINE Alu 1 296 -16 295 68 102 0 chr1 25060839 25060898 -257132766 + (AAATG)n Simple_repeat Simple_repeat 3 67 0 690 186 0 0 chr1 25060988 25061106 -257132558 - FLAM_C SINE Alu -24 119 2 594 263 0 26 chr1 25061106 25061262 -257132402 + MER58A DNA MER1_type 40 191 -33 277 255 75 9 chr1 25061714 25061820 -257131844 - L2 LINE L2 -163 3150 3038 226 322 0 0 chr1 25061887 25061946 -257131718 + L2 LINE L2 3214 3272 0 203 301 123 0 chr1 25062336 25062409 -257131255 + MIR SINE MIR 20 101 -161 232 276 0 17 chr1 25063583 25063641 -257130023 - L2 LINE L2 -27 3245 3189 237 282 96 19 chr1 25063829 25063985 -257129679 - L2 LINE L2 -424 2890 2723 341 280 11 0 chr1 25064311 25064404 -257129260 - L1MB7 LINE L1 -9 6175 6082 1439 283 111 33 chr1 25065087 25065756 -257127908 + L2 LINE L2 531 1251 -2063 866 215 22 154 chr1 25065760 25065935 -257127729 + L2 LINE L2 2319 2411 -903 1363 181 75 43 chr1 25065935 25066216 -257127448 - AluJo SINE Alu -22 290 1 866 215 22 154 chr1 25066216 25066450 -257127214 + L2 LINE L2 2411 2674 -640 1009 216 105 73 chr1 25066520 25066797 -257126867 + MLT1A1 LTR MaLR 12 304 -61 2098 138 0 0 chr1 25066797 25067094 -257126570 - AluSx SINE Alu -15 297 1 1009 216 105 73 chr1 25067094 25067159 -257126505 + MLT1A1 LTR MaLR 304 365 0 2807 247 84 46 chr1 25067255 25068486 -257125178 - L1MEd LINE L1 -4858 1271 1 200 139 116 0 chr1 25069269 25069312 -257124352 - L2 LINE L2 -2 3311 3264 214 309 29 0 chr1 25072606 25072674 -257120990 + CT-rich Low_complexity Low_complexity 3 72 0 493 285 0 21 chr1 25073508 25073652 -257120012 - MIR3 SINE MIR -62 146 6 2332 93 10 0 chr1 25073727 25074028 -257119636 + AluSq SINE Alu 1 304 -9 1231 97 0 0 chr1 25074028 25074183 -257119481 + AluSg/x SINE Alu 137 291 -21 537 268 39 22 chr1 25076219 25076398 -257117266 + MIR3 SINE MIR 20 201 -7 233 250 29 29 chr1 25076550 25076618 -257117046 + MIR3 SINE MIR 110 177 -31 1370 186 145 49 chr1 25079239 25079626 -257114038 + MLT1D LTR MaLR 65 488 -17 247 299 109 43 chr1 25083008 25083448 -257110216 - L2 LINE L2 -243 3029 2478 182 245 20 0 chr1 25083918 25083967 -257109697 + L2 LINE L2 3174 3223 -90 413 269 92 0 chr1 25084905 25085024 -257108640 - MIR SINE MIR -105 157 28 686 155 0 0 chr1 25086081 25086184 -257107480 + MER46A DNA MER2_type 45 147 -89 2079 114 28 10 chr1 25086805 25087095 -257106569 - AluSg SINE Alu -15 295 1 2389 79 3 0 chr1 25087827 25088119 -257105545 - AluSq SINE Alu -20 293 1 32 75 0 0 chr1 25088123 25088190 -257105474 + AT_rich Low_complexity Low_complexity 1 67 0 1995 102 53 7 chr1 25088200 25088483 -257105181 - AluSx SINE Alu -16 296 1 1856 219 133 17 chr1 25088572 25089220 -257104444 + L1ME1 LINE L1 4422 5144 -1002 654 150 39 24 chr1 25089222 25089349 -257104315 + AluJb SINE Alu 176 304 -8 2995 205 106 33 chr1 25089349 25090301 -257103363 + L1ME1 LINE L1 5163 6332 -2 190 302 0 0 chr1 25090637 25090690 -257102974 + L2 LINE L2 3182 3234 -38 2217 104 21 0 chr1 25090845 25091133 -257102531 + AluSq SINE Alu 1 294 -19 475 274 168 0 chr1 25091940 25092137 -257101527 - MIR SINE MIR -1 261 32 2487 77 0 0 chr1 25092961 25093258 -257100406 - AluY SINE Alu -14 297 1 2046 141 7 10 chr1 25093296 25093595 -257100069 - AluSx SINE Alu -14 298 1 223 267 33 33 chr1 25093733 25093823 -257099841 - MIR SINE MIR -70 192 103 1199 112 48 0 chr1 25094198 25094385 -257099279 - MER30 DNA MER1_type -34 196 1 199 259 0 19 chr1 25094896 25094950 -257098714 - MIR3 SINE MIR -2 206 154 246 62 0 0 chr1 25098035 25098067 -257095597 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1691 169 10 14 chr1 25099595 25099890 -257093774 + AluJb SINE Alu 1 294 -18 256 207 35 35 chr1 25100021 25100079 -257093585 + L2 LINE L2 3215 3272 0 276 53 0 0 chr1 25100529 25100567 -257093097 + (CA)n Simple_repeat Simple_repeat 2 39 0 333 320 59 35 chr1 25101578 25101781 -257091883 + MIR SINE MIR 14 221 -41 2165 121 3 7 chr1 25101826 25102124 -257091540 + AluSx SINE Alu 1 297 -15 199 269 60 15 chr1 25102565 25102632 -257091032 - MER5C DNA MER1_type -238 86 17 180 179 0 0 chr1 25104499 25104538 -257089126 + (TA)n Simple_repeat Simple_repeat 1 39 0 628 250 21 0 chr1 25105141 25105285 -257088379 + AluJo SINE Alu 5 151 -161 612 136 0 0 chr1 25105406 25105494 -257088170 + AluS SINE Alu 1 88 -225 1380 178 66 4 chr1 25105496 25105754 -257087910 + AluJb SINE Alu 23 296 -16 1471 111 120 0 chr1 25105767 25105984 -257087680 + AluY SINE Alu 60 302 -9 25 0 0 0 chr1 25107101 25107126 -257086538 + AT_rich Low_complexity Low_complexity 1 25 0 32 0 0 0 chr1 25108442 25108474 -257085190 + AT_rich Low_complexity Low_complexity 1 32 0 1376 222 31 3 chr1 25108858 25109146 -257084518 + AluJo SINE Alu 1 296 -16 449 154 8 12 chr1 25109155 25109279 -257084385 + AluJb SINE Alu 105 280 -32 808 154 0 23 chr1 25109376 25109506 -257084158 - FLAM_A SINE Alu -4 129 3 2055 162 0 0 chr1 25110099 25110408 -257083256 + AluJb SINE Alu 1 309 -3 235 242 32 16 chr1 25110498 25110560 -257083104 + L3 LINE CR1 1165 1227 -350 247 296 42 0 chr1 25110565 25110636 -257083028 - MIR SINE MIR -158 104 31 414 306 161 19 chr1 25110812 25111136 -257082528 - L2 LINE L2 -1000 2314 1945 472 240 98 6 chr1 25112333 25112516 -257081148 + L1ME4a LINE L1 5552 5751 -370 22 0 0 0 chr1 25112651 25112673 -257080991 + AT_rich Low_complexity Low_complexity 1 22 0 2112 120 3 13 chr1 25112682 25112982 -257080682 - AluSx SINE Alu -15 297 1 426 280 115 21 chr1 25113003 25113246 -257080418 + L1ME4a LINE L1 5856 6121 0 2118 89 0 4 chr1 25114077 25114346 -257079318 - AluSq SINE Alu -8 305 38 2291 103 0 13 chr1 25114608 25114918 -257078746 - AluSx SINE Alu -6 306 1 26 0 0 0 chr1 25115342 25115368 -257078296 + AT_rich Low_complexity Low_complexity 1 26 0 1632 159 26 43 chr1 25115863 25116165 -257077499 - AluJb SINE Alu -15 297 1 331 214 66 148 chr1 25117580 25117762 -257075902 + MIR3 SINE MIR 32 198 -10 2163 119 0 0 chr1 25120736 25121022 -257072642 + AluSx SINE Alu 1 286 -26 2854 6 0 0 chr1 25121033 25121344 -257072320 + AluYa5 SINE Alu 1 311 0 23 33 0 0 chr1 25121923 25121953 -257071711 + AT_rich Low_complexity Low_complexity 1 30 0 2459 85 0 0 chr1 25122044 25122349 -257071315 + AluSg SINE Alu 1 305 -5 1715 168 37 20 chr1 25122973 25123270 -257070394 - AluJo SINE Alu -10 302 1 181 336 74 25 chr1 25123847 25123969 -257069695 - L2 LINE L2 -27 3286 3159 193 383 64 14 chr1 25124299 25124440 -257069224 - L2 LINE L2 -607 2707 2560 570 141 0 22 chr1 25124784 25124876 -257068788 + AluJ/FLAM SINE Alu 10 99 -213 336 24 0 0 chr1 25125493 25125534 -257068130 + (CA)n Simple_repeat Simple_repeat 2 42 0 1049 157 55 0 chr1 25126145 25126362 -257067302 + L1MA8 LINE L1 6060 6288 -3 1989 135 10 16 chr1 25126462 25126632 -257067032 - AluSx SINE Alu -11 301 132 207 0 0 0 chr1 25126632 25126655 -257067009 + (TG)n Simple_repeat Simple_repeat 2 24 0 1989 135 10 16 chr1 25126655 25126787 -257066877 - AluSx SINE Alu -180 132 1 2241 118 3 0 chr1 25128283 25128587 -257065077 + AluSp SINE Alu 1 305 -8 296 298 98 64 chr1 25129835 25130100 -257063564 + L2 LINE L2 2618 2891 -423 2113 106 47 10 chr1 25130232 25130533 -257063131 - AluSx SINE Alu 0 312 1 383 111 0 0 chr1 25130625 25130679 -257062985 + Alu SINE Alu 1 54 -254 1530 77 16 0 chr1 25130679 25130873 -257062791 + AluSg/x SINE Alu 92 288 -24 251 329 0 0 chr1 25132947 25133017 -257060647 + (CATA)n Simple_repeat Simple_repeat 3 72 0 2351 106 0 0 chr1 25133845 25134156 -257059508 + AluSx SINE Alu 1 311 -1 21 36 0 0 chr1 25134432 25134460 -257059204 + AT_rich Low_complexity Low_complexity 1 28 0 810 158 17 90 chr1 25135456 25135633 -257058031 + AluJb SINE Alu 137 300 -12 1590 160 22 47 chr1 25136063 25136381 -257057283 + AluJb SINE Alu 1 310 -2 23 0 0 0 chr1 25136665 25136688 -257056976 + AT_rich Low_complexity Low_complexity 1 23 0 24 53 0 0 chr1 25136698 25136736 -257056928 + AT_rich Low_complexity Low_complexity 1 38 0 1832 164 30 3 chr1 25137103 25137407 -257056257 + AluJb SINE Alu 1 312 0 500 75 12 0 chr1 25137440 25137520 -257056144 + L1MA1 LINE L1 6222 6302 0 1915 167 10 0 chr1 25137670 25137975 -257055689 - AluJb SINE Alu -4 308 1 2247 114 3 0 chr1 25138156 25138455 -257055209 + AluSq SINE Alu 2 301 -12 759 166 122 11 chr1 25138516 25138697 -257054967 + MER3 DNA MER1_type 5 205 -4 190 295 238 33 chr1 25138894 25139016 -257054648 - MIR SINE MIR -15 247 101 445 260 27 14 chr1 25139187 25139333 -257054331 + MER69A DNA AcHobo 1 148 -29 1779 170 3 0 chr1 25139636 25139924 -257053740 + AluJo SINE Alu 1 289 -23 3736 159 106 36 chr1 25140000 25140837 -257052827 + L1MB7 LINE L1 4563 5341 -843 2042 119 10 10 chr1 25140837 25141139 -257052525 + AluSx SINE Alu 11 312 0 2249 102 3 16 chr1 25141145 25141460 -257052204 + AluSp SINE Alu 1 311 -2 3736 159 106 36 chr1 25141460 25142105 -257051559 + L1MB7 LINE L1 5345 6172 -12 2269 70 7 10 chr1 25142105 25142405 -257051259 - AluSq SINE Alu -14 299 1 423 235 49 10 chr1 25142963 25143065 -257050599 + MIR SINE MIR 58 163 -99 195 139 0 0 chr1 25144135 25144171 -257049493 + (CCG)n Simple_repeat Simple_repeat 2 37 0 224 234 288 36 chr1 25144592 25144703 -257048961 - L2 LINE L2 0 3313 3175 948 203 41 45 chr1 25145172 25145418 -257048246 + L1ME2 LINE L1 5911 6155 -9 747 185 0 30 chr1 25145514 25145649 -257048015 + FLAM_A SINE Alu 2 132 -1 460 196 0 0 chr1 25145653 25145745 -257047919 + HAL1 LINE L1 2074 2165 -342 2214 109 0 0 chr1 25145762 25146074 -257047590 - AluSx SINE Alu 0 312 1 320 284 91 0 chr1 25146075 25146163 -257047501 + HAL1 LINE L1 2147 2242 -265 2251 49 3 3 chr1 25146256 25146544 -257047120 + AluY SINE Alu 1 288 -23 558 0 0 0 chr1 25146545 25146607 -257047057 + (TA)n Simple_repeat Simple_repeat 1 62 0 768 208 56 19 chr1 25146608 25146824 -257046840 + HAL1 LINE L1 2278 2501 -6 424 288 26 0 chr1 25146838 25146991 -257046673 + L1ME LINE L1 5599 5755 -366 988 188 0 0 chr1 25146993 25147153 -257046511 + FRAM SINE Alu 1 160 -6 1733 154 85 3 chr1 25147190 25147508 -257046156 + MER7A DNA MER2_type 1 342 -4 1139 84 0 7 chr1 25147581 25147735 -257045929 + AluSx SINE Alu 1 153 -159 3125 122 44 8 chr1 25147777 25148302 -257045362 - L1MB2 LINE L1 -3 6168 5625 2193 74 47 0 chr1 25148318 25148617 -257045047 - AluSq SINE Alu 0 313 1 2118 126 0 0 chr1 25148644 25148953 -257044711 + AluSx SINE Alu 3 311 -1 1483 141 15 41 chr1 25148973 25149243 -257044421 + AluJo SINE Alu 50 312 0 288 287 0 28 chr1 25149478 25149586 -257044078 + MIR SINE MIR 158 262 0 244 266 57 65 chr1 25149997 25150121 -257043543 + MIR SINE MIR 24 146 -62 2102 128 0 0 chr1 25150312 25150616 -257043048 + AluSx SINE Alu 1 304 -8 1758 144 24 10 chr1 25150617 25150915 -257042749 + AluJb SINE Alu 1 302 -10 1009 163 36 50 chr1 25150974 25151195 -257042469 - MER20 DNA MER1_type 0 219 2 1814 132 30 7 chr1 25151413 25151717 -257041947 - AluJb SINE Alu -1 311 1 188 310 132 81 chr1 25152030 25152060 -257041604 + MIR SINE MIR 80 107 -155 2063 77 3 95 chr1 25152060 25152396 -257041268 + AluSq SINE Alu 1 305 -8 188 310 132 81 chr1 25152396 25152539 -257041125 + MIR SINE MIR 107 262 0 2238 111 0 0 chr1 25153274 25153580 -257040084 - AluSq SINE Alu -7 306 1 638 244 143 9 chr1 25153582 25153799 -257039865 + MER113 DNA MER1_type? 233 478 -43 289 310 0 60 chr1 25154088 25154204 -257039460 + L2 LINE L2 3185 3293 -20 1994 113 40 30 chr1 25154213 25154515 -257039149 + AluSx SINE Alu 1 305 -7 580 286 6 37 chr1 25154600 25154761 -257038903 + MIR SINE MIR 18 173 -89 225 91 0 0 chr1 25154770 25154803 -257038861 - MSTD LTR MaLR 0 365 333 1966 145 0 7 chr1 25154807 25155111 -257038553 + AluJb SINE Alu 1 302 -10 853 188 0 0 chr1 25155111 25155260 -257038404 + AluJb SINE Alu 134 282 -30 974 227 61 88 chr1 25155274 25155497 -257038167 - MSTD LTR MaLR -31 365 155 2185 67 0 64 chr1 25155497 25155663 -257038001 - AluY SINE Alu -18 293 155 2515 45 0 10 chr1 25155663 25155977 -257037687 - AluY SINE Alu 0 311 1 2185 67 0 64 chr1 25155977 25156123 -257037541 - AluY SINE Alu -156 155 1 974 227 61 88 chr1 25156123 25156274 -257037390 - MSTD LTR MaLR -241 155 1 5519 200 65 71 chr1 25156274 25156589 -257037075 - MSTD-int LTR MaLR 0 1735 1420 1871 142 7 3 chr1 25156589 25156885 -257036779 - AluJb SINE Alu -15 297 1 5519 200 65 71 chr1 25156885 25157766 -257035898 - MSTD-int LTR MaLR -315 1420 545 1800 133 3 27 chr1 25157766 25158060 -257035604 - AluSg SINE Alu -23 287 1 5519 200 65 71 chr1 25158060 25158202 -257035462 - MSTD-int LTR MaLR -1190 545 404 3571 88 38 97 chr1 25158207 25158402 -257035262 - MER4A LTR ERV1 0 600 395 1846 104 0 11 chr1 25158402 25158662 -257035002 + AluSx SINE Alu 37 293 -19 3571 88 38 97 chr1 25158662 25159104 -257034560 - MER4A LTR ERV1 -205 395 1 751 123 0 87 chr1 25159110 25159174 -257034490 - MER4A-int LTR ERV1 -2 6596 6549 889 150 0 0 chr1 25159174 25159307 -257034357 - FLAM_C SINE Alu 0 133 1 751 123 0 87 chr1 25159307 25159380 -257034284 - MER4A-int LTR ERV1 -49 6549 6471 1709 181 108 10 chr1 25159380 25159788 -257033876 + LTR7 LTR ERV1 1 448 -2 1999 184 109 16 chr1 25159792 25160243 -257033421 + HERVH LTR ERV1 2 494 -7219 17944 136 3 18 chr1 25160260 25163114 -257030550 + HERVH LTR ERV1 773 3585 -4128 14290 112 30 30 chr1 25163116 25165319 -257028345 + HERVH LTR ERV1 3813 6016 -1697 3079 159 18 21 chr1 25165312 25165871 -257027793 + HERVH LTR ERV1 7157 7713 0 * 1647 149 123 20 chr1 25165871 25166279 -257027385 + LTR7 LTR ERV1 1 450 0 19384 117 89 70 chr1 25166281 25167164 -257026500 - MER4A-int LTR ERV1 -125 6473 5608 2307 103 0 0 chr1 25167164 25167474 -257026190 - AluSg SINE Alu 0 310 1 19384 117 89 70 chr1 25167474 25169018 -257024646 - MER4A-int LTR ERV1 -990 5608 4094 2111 102 3 3 chr1 25169018 25169312 -257024352 + AluSc SINE Alu 1 294 -15 19384 117 89 70 chr1 25169312 25170053 -257023611 - MER4A-int LTR ERV1 -2504 4094 3368 1850 113 0 0 chr1 25170053 25170309 -257023355 + AluSx SINE Alu 37 292 -20 19384 117 89 70 chr1 25170309 25170843 -257022821 - MER4A-int LTR ERV1 -3230 3368 2845 1991 145 3 0 chr1 25170843 25171146 -257022518 - AluSq SINE Alu -9 304 1 19384 117 89 70 chr1 25171146 25171506 -257022158 - MER4A-int LTR ERV1 -3753 2845 2493 2315 82 0 0 chr1 25171506 25171812 -257021852 - AluY SINE Alu -5 306 1 19384 117 89 70 chr1 25171812 25171861 -257021803 - MER4A-int LTR ERV1 -4105 2493 2446 2106 99 0 3 chr1 25171861 25172196 -257021468 - AluSx SINE Alu 0 334 1 19384 117 89 70 chr1 25172196 25172835 -257020829 - MER4A-int LTR ERV1 -4152 2446 1820 2098 107 23 3 chr1 25172835 25173135 -257020529 - AluSx SINE Alu -6 306 1 19384 117 89 70 chr1 25173135 25173349 -257020315 - MER4A-int LTR ERV1 -4778 1820 1611 2223 114 0 0 chr1 25173349 25173656 -257020008 - AluSx SINE Alu -5 307 1 19384 117 89 70 chr1 25173656 25173996 -257019668 - MER4A-int LTR ERV1 -4987 1611 195 1423 224 31 48 chr1 25174017 25174374 -257019290 - MER4A-int LTR ERV1 -4131 2200 1850 2957 131 259 40 chr1 25174395 25174602 -257019062 - MER4A-int LTR ERV1 -5770 828 668 1844 150 0 19 chr1 25174602 25174909 -257018755 - AluJb SINE Alu -11 301 1 2957 131 259 40 chr1 25174909 25175380 -257018284 - MER4A-int LTR ERV1 -5930 668 1 3922 105 6 48 chr1 25175383 25176009 -257017655 - MER4A LTR ERV1 0 600 1 1607 173 73 90 chr1 25176009 25176297 -257017367 - MLT1A1-int LTR MaLR -1332 403 112 2244 95 0 0 chr1 25176297 25176601 -257017063 + AluSx SINE Alu 1 304 -8 1607 173 73 90 chr1 25176601 25176625 -257017039 - MLT1A1-int LTR MaLR -1623 112 89 1517 143 26 68 chr1 25176625 25176959 -257016705 + AluSx SINE Alu 1 312 0 1607 173 73 90 chr1 25176959 25177055 -257016609 - MLT1A1-int LTR MaLR -1646 89 1 361 89 0 0 chr1 25177060 25177105 -257016559 - MLT1A1 LTR MaLR -5 391 347 473 141 0 0 chr1 25177105 25177176 -257016488 - FLAM SINE Alu -16 127 57 1202 161 24 140 chr1 25177178 25177550 -257016114 - MLT1A1 LTR MaLR -36 329 1 765 256 57 5 chr1 25177646 25177857 -257015807 + LTR33 LTR ERVL 1 222 -299 2401 78 0 0 chr1 25178428 25178734 -257014930 - AluSg SINE Alu -4 306 1 2166 89 0 40 chr1 25179116 25179442 -257014222 - AluSq SINE Alu 0 313 1 3847 87 31 61 chr1 25180024 25180146 -257013518 + MER4A LTR ERV1 1 125 -475 2033 104 23 3 chr1 25180146 25180445 -257013219 + AluSx SINE Alu 1 305 -7 3847 87 31 61 chr1 25180445 25180941 -257012723 + MER4A LTR ERV1 125 600 0 302 241 230 0 chr1 25182235 25182322 -257011342 + L2 LINE L2 2124 2230 -1084 2002 116 20 7 chr1 25182322 25182625 -257011039 - AluSg SINE Alu -3 307 1 1370 126 76 9 chr1 25182625 25182848 -257010816 - MER2 DNA MER2_type -107 238 1 477 261 92 0 chr1 25182848 25183001 -257010663 + L2 LINE L2 2534 2700 -614 24 0 0 0 chr1 25183001 25183025 -257010639 + AT_rich Low_complexity Low_complexity 1 24 0 518 174 0 12 chr1 25183034 25183120 -257010544 - AluJo SINE Alu -151 161 77 1977 122 3 7 chr1 25183145 25183488 -257010176 + AluSx SINE Alu 1 312 0 1745 161 30 3 chr1 25183493 25183797 -257009867 + AluJo SINE Alu 1 312 0 864 171 0 0 chr1 25183820 25183960 -257009704 + FRAM SINE Alu 15 154 -22 1369 263 49 23 chr1 25183962 25184382 -257009282 + L2 LINE L2 2708 3147 -166 1430 165 3 111 chr1 25184382 25184568 -257009096 - AluJb SINE Alu -4 298 162 2352 73 0 19 chr1 25184568 25184885 -257008779 - AluY SINE Alu 0 311 1 1430 165 3 111 chr1 25184885 25185032 -257008632 - AluJb SINE Alu -140 162 1 1369 263 49 23 chr1 25185032 25185200 -257008464 + L2 LINE L2 3147 3309 -4 222 224 171 0 chr1 25185207 25185283 -257008381 + L2 LINE L2 3178 3266 -6 2085 114 0 3 chr1 25185395 25185693 -257007971 - AluY SINE Alu -14 297 1 1069 117 6 6 chr1 25185739 25185918 -257007746 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1875 124 0 0 chr1 25185923 25186196 -257007468 - AluSx SINE Alu -39 273 1 468 35 0 0 chr1 25186205 25186263 -257007401 + (TTCC)n Simple_repeat Simple_repeat 4 61 0 1916 133 13 22 chr1 25186263 25186578 -257007086 - AluSx SINE Alu 0 312 1 819 255 21 34 chr1 25186666 25186901 -257006763 - MIR SINE MIR 0 262 31 186 221 147 29 chr1 25186932 25187000 -257006664 - L2 LINE L2 -525 2789 2714 213 191 106 0 chr1 25187353 25187400 -257006264 - L2 LINE L2 -51 3221 3170 255 31 0 0 chr1 25187445 25187477 -257006187 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 258 171 24 61 chr1 25187501 25187583 -257006081 - MIR SINE MIR -14 248 170 356 306 159 0 chr1 25187615 25187785 -257005879 + MIR SINE MIR 42 238 -24 410 291 26 8 chr1 25187861 25187978 -257005686 + MIR3 SINE MIR 42 160 -48 503 212 40 0 chr1 25188140 25188239 -257005425 + MER5A DNA MER1_type 7 109 -80 586 249 85 42 chr1 25188304 25188469 -257005195 + MER5B DNA MER1_type 1 172 -6 3770 124 40 30 chr1 25188618 25188748 -257004916 - MER4E LTR ERV1 0 766 639 1942 137 7 3 chr1 25188748 25189054 -257004610 - AluSx SINE Alu -5 307 1 3770 124 40 30 chr1 25189054 25189677 -257003987 - MER4E LTR ERV1 -127 639 10 1522 155 7 54 chr1 25189677 25189949 -257003715 + AluJo SINE Alu 13 271 -41 1586 167 29 20 chr1 25189949 25190255 -257003409 - AluJb SINE Alu -3 309 1 1522 155 7 54 chr1 25190255 25190279 -257003385 + AluJo SINE Alu 271 295 -17 521 253 136 40 chr1 25190297 25190495 -257003169 - MIR SINE MIR -6 256 40 552 231 19 0 chr1 25191105 25191213 -257002451 + MER81 DNA DNA 2 111 -3 477 0 0 0 chr1 25191591 25191644 -257002020 + (CAT)n Simple_repeat Simple_repeat 3 55 0 566 250 100 25 chr1 25191903 25192103 -257001561 - MIR SINE MIR -47 215 1 199 277 32 64 chr1 25192103 25192176 -257001488 + L2 LINE L2 3201 3270 -2 275 315 67 0 chr1 25192580 25192669 -257000995 + MIR SINE MIR 50 144 -118 1953 207 55 16 chr1 25192907 25192953 -257000711 - L1ME1 LINE L1 -8 6158 6115 1712 132 4 11 chr1 25192953 25193226 -257000438 - AluJo SINE Alu -9 303 33 1953 207 55 16 chr1 25193226 25193619 -257000045 - L1ME1 LINE L1 -51 6115 5702 407 325 34 0 chr1 25193710 25193827 -256999837 - MIR SINE MIR -55 153 33 207 220 40 0 chr1 25193839 25193889 -256999775 - L2 LINE L2 -9 3263 3212 327 258 31 0 chr1 25194433 25194530 -256999134 + L1ME LINE L1 4886 4985 -1161 1013 135 0 0 chr1 25194706 25194839 -256998825 + AluJo/FLAM SINE Alu 1 133 -179 374 127 36 0 chr1 25194840 25194895 -256998769 + AluJ/FRAM SINE Alu 233 289 -13 954 212 126 0 chr1 25194908 25195139 -256998525 - MIR SINE MIR -2 260 1 310 203 0 0 chr1 25195285 25195344 -256998320 + L1ME LINE L1 5373 5431 -739 448 267 122 22 chr1 25195867 25196047 -256997617 - L2 LINE L2 -2 3311 3114 180 97 0 0 chr1 25196108 25196139 -256997525 + (TC)n Simple_repeat Simple_repeat 2 32 0 267 203 0 0 chr1 25196163 25196222 -256997442 + (TATG)n Simple_repeat Simple_repeat 2 60 0 1824 161 0 21 chr1 25196237 25196389 -256997275 - AluJb SINE Alu -30 282 137 2108 159 0 0 chr1 25196389 25196697 -256996967 - AluJb SINE Alu -4 308 1 1824 161 0 21 chr1 25196697 25196830 -256996834 - AluJb SINE Alu -175 137 3 544 278 111 21 chr1 25196854 25197188 -256996476 - L2 LINE L2 -776 2538 2175 318 266 204 0 chr1 25197188 25197301 -256996363 - L1M4 LINE L1 -2727 3419 3284 376 296 10 10 chr1 25197465 25197563 -256996101 + L2 LINE L2 3154 3251 -21 * 406 171 143 19 chr1 25197558 25197663 -256996001 - MIR SINE MIR 0 262 145 1305 177 23 0 chr1 25197672 25197932 -256995732 - L1MB7 LINE L1 -18 6166 5901 965 87 0 0 chr1 25197932 25198059 -256995605 + THE1C LTR MaLR 249 375 0 249 182 0 0 chr1 25198059 25198103 -256995561 - L2 LINE L2 -213 3059 3016 395 328 11 0 chr1 25198576 25198712 -256994952 + MIR SINE MIR 9 146 -62 408 218 46 20 chr1 25199168 25199299 -256994365 - MLT1H LTR MaLR 0 549 403 390 262 134 0 chr1 25199352 25199516 -256994148 - MLT1H LTR MaLR -249 300 115 2162 99 0 53 chr1 25199547 25199850 -256993814 + AluSx SINE Alu 1 287 -25 484 296 87 112 chr1 25200771 25201210 -256992454 - L2 LINE L2 0 3272 2845 326 326 79 47 chr1 25201299 25201578 -256992086 + L3 LINE CR1 1020 1307 -270 2101 100 0 4 chr1 25201738 25202009 -256991655 + AluSg SINE Alu 1 270 -40 2230 131 0 3 chr1 25202120 25202433 -256991231 + AluSx SINE Alu 1 312 0 594 274 99 24 chr1 25202437 25202649 -256991015 + MIR SINE MIR 34 261 -1 1694 209 0 0 chr1 25202704 25203010 -256990654 + AluJb SINE Alu 1 306 -6 2587 74 0 3 chr1 25203141 25203450 -256990214 - AluSq SINE Alu -5 308 1 235 160 15 118 chr1 25203951 25204039 -256989625 - MIR SINE MIR -67 141 84 404 311 64 21 chr1 25204417 25204614 -256989050 - MIR SINE MIR -8 254 40 1482 166 8 4 chr1 25205399 25205634 -256988030 + AluJo SINE Alu 1 236 -76 1764 241 64 39 chr1 25205706 25205832 -256987832 + L1MC4a LINE L1 5254 5375 -2433 2415 99 0 3 chr1 25205832 25206146 -256987518 + AluSq SINE Alu 1 313 0 1764 241 64 39 chr1 25206146 25206708 -256986956 + L1MC4a LINE L1 5375 5959 -1849 304 289 45 94 chr1 25206751 25206952 -256986712 + HAL1 LINE L1 2316 2506 -1 1803 176 13 0 chr1 25207389 25207691 -256985973 - AluJo SINE Alu -4 308 3 2358 96 3 7 chr1 25207700 25208003 -256985661 - AluSx SINE Alu -10 302 1 572 271 111 24 chr1 25208021 25208228 -256985436 - MIR SINE MIR -1 261 37 258 266 221 32 chr1 25208676 25208830 -256984834 - L2 LINE L2 -1 3312 3130 430 263 0 83 chr1 25209060 25209216 -256984448 + MIR3 SINE MIR 17 159 -49 429 271 49 0 chr1 25209512 25209634 -256984030 + MIR3 SINE MIR 61 188 -20 519 124 134 139 chr1 25210865 25211059 -256982605 + MER5C DNA MER1_type 4 196 -128 2296 85 3 0 chr1 25211077 25211370 -256982294 + AluSx SINE Alu 3 296 -16 1287 133 38 14 chr1 25211378 25211588 -256982076 + AluJb SINE Alu 87 301 -11 2378 200 98 19 chr1 25211594 25211926 -256981738 - L1ME1 LINE L1 -6 6160 5856 2329 92 7 0 chr1 25211926 25212231 -256981433 - AluSg SINE Alu -3 307 1 2378 200 98 19 chr1 25212231 25212438 -256981226 - L1ME1 LINE L1 -310 5856 5667 2303 102 0 19 chr1 25212438 25212752 -256980912 - AluY SINE Alu -3 308 1 2378 200 98 19 chr1 25212752 25213044 -256980620 - L1ME1 LINE L1 -499 5667 5141 463 145 118 13 chr1 25213088 25213226 -256980438 - L1MD1 LINE L1 0 6359 6075 624 212 26 46 chr1 25213226 25213412 -256980252 + FRAM SINE Alu 1 183 0 5188 184 31 56 chr1 25213413 25214337 -256979327 - L1MD1 LINE L1 -157 6085 5140 1614 218 64 80 chr1 25214337 25214464 -256979200 + MLT1D LTR MaLR 1 128 -377 1832 162 14 10 chr1 25214464 25214761 -256978903 - AluJo SINE Alu -13 299 2 1614 218 64 80 chr1 25214761 25215146 -256978518 + MLT1D LTR MaLR 128 505 0 5188 184 31 56 chr1 25215146 25215403 -256978261 - L1MD1 LINE L1 -1102 5140 4878 1328 164 24 155 chr1 25215403 25215823 -256977841 - MLT1A1 LTR MaLR 0 365 1 5188 184 31 56 chr1 25215823 25215865 -256977799 - L1MD1 LINE L1 -1364 4878 4836 1318 164 18 123 chr1 25215865 25216206 -256977458 + AluYb8 SINE Alu 1 305 -13 5188 184 31 56 chr1 25216206 25217014 -256976650 - L1MD1 LINE L1 -1406 4836 4010 2612 62 0 0 chr1 25217014 25217322 -256976342 - AluY SINE Alu -3 308 1 5188 184 31 56 chr1 25217322 25217406 -256976258 - L1MD1 LINE L1 -2232 4010 3925 2436 88 0 0 chr1 25217406 25217711 -256975953 - AluSg SINE Alu -5 305 1 5188 184 31 56 chr1 25217711 25217959 -256975705 - L1MD1 LINE L1 -2317 3925 3789 402 19 0 19 chr1 25217959 25218011 -256975653 - PRIMA41-int LTR ERV1 -904 7216 7166 329 318 4 90 chr1 25218030 25218152 -256975512 - PRIMA41-int LTR ERV1 -2242 6384 6253 2284 110 3 0 chr1 25218152 25218452 -256975212 + AluSg SINE Alu 1 301 -9 1866 171 7 0 chr1 25218462 25218755 -256974909 + AluJb SINE Alu 2 296 -16 329 318 4 90 chr1 25218755 25218876 -256974788 - PRIMA41-int LTR ERV1 -2382 6244 6152 263 322 19 38 chr1 25218869 25219080 -256974584 - PRIMA41-int LTR ERV1 -3119 4637 4431 * 747 321 49 41 chr1 25219082 25219596 -256974068 - PRIMA41-int LTR ERV1 -3387 3735 3218 2357 112 0 3 chr1 25219899 25220212 -256973452 - AluSx SINE Alu 0 312 1 320 261 0 0 chr1 25220412 25220477 -256973187 + LOR1-int LTR ERV1 525 589 -7531 204 217 0 0 chr1 25221349 25221395 -256972269 + (CA)n Simple_repeat Simple_repeat 2 47 0 1471 130 60 60 chr1 25221395 25221433 -256972231 - LOR1b-int LTR ERV1 -7700 420 383 2204 139 0 0 chr1 25221433 25221735 -256971929 + AluSx SINE Alu 1 302 -10 1471 130 60 60 chr1 25221735 25221995 -256971669 - LOR1b-int LTR ERV1 -7736 384 122 1825 157 164 8 chr1 25222109 25222505 -256971159 - LOR1b LTR ERV1 0 461 4 2102 236 49 36 chr1 25222507 25223246 -256970418 - L1MD1 LINE L1 -2354 3792 3045 240 250 29 0 chr1 25223252 25223320 -256970344 + MLT1G1 LTR MaLR 526 595 0 928 204 91 11 chr1 25223424 25223610 -256970054 + AluJo SINE Alu 1 201 -111 1604 223 31 15 chr1 25223610 25224090 -256969574 - L1MD1 LINE L1 -3109 3037 2550 7692 25 1 2 chr1 25224090 25225706 -256967958 + L1PA4 LINE L1 4541 6155 0 288 206 29 0 chr1 25225779 25225847 -256967817 + MLT1G1 LTR MaLR 526 595 0 1540 196 60 11 chr1 25225951 25226232 -256967432 + AluJb SINE Alu 1 295 -17 1359 168 62 65 chr1 25226276 25226585 -256967079 - AluJo SINE Alu -4 308 1 253 329 61 0 chr1 25226839 25226921 -256966743 + MER91 DNA MER1_type 52 138 -58 728 277 48 0 chr1 25227495 25227683 -256965981 + MIR SINE MIR 57 253 -9 756 225 75 0 chr1 25227853 25228026 -256965638 - MER51C LTR ERV1 0 640 455 1843 196 63 65 chr1 25228390 25228508 -256965156 + MLT1D LTR MaLR 1 118 -387 1741 163 14 10 chr1 25228508 25228817 -256964847 - AluJb SINE Alu 0 312 5 1843 196 63 65 chr1 25228817 25229204 -256964460 + MLT1D LTR MaLR 118 505 0 306 222 0 0 chr1 25229220 25229274 -256964390 - MIR SINE MIR -132 130 77 2285 105 3 10 chr1 25229417 25229722 -256963942 - AluSq SINE Alu -10 303 1 1320 157 81 8 chr1 25229904 25230074 -256963590 - AluJo SINE Alu -8 304 111 240 35 0 0 chr1 25230074 25230103 -256963561 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 1320 157 81 8 chr1 25230103 25230168 -256963496 - AluJo SINE Alu -201 111 52 1117 102 14 0 chr1 25230175 25230322 -256963342 + AluSg/x SINE Alu 163 311 -1 256 200 227 0 chr1 25230792 25230903 -256962761 - MIR SINE MIR -76 186 44 287 303 45 45 chr1 25231256 25231388 -256962276 + MIR SINE MIR 16 147 -61 370 234 43 0 chr1 25231408 25231502 -256962162 - MER63C DNA MER1_type -11 919 822 2162 70 11 21 chr1 25231502 25231809 -256961855 + AluSg SINE Alu 1 304 0 355 188 86 78 chr1 25231815 25231872 -256961792 - MER63C DNA MER1_type -675 385 330 1726 163 9 77 chr1 25231872 25232198 -256961466 - AluJo SINE Alu -8 304 1 2538 85 0 0 chr1 25232206 25232512 -256961152 - AluSc SINE Alu -3 306 1 355 188 86 78 chr1 25232512 25232573 -256961091 - MER63C DNA MER1_type -736 324 257 903 129 0 0 chr1 25232893 25233017 -256960647 - AluJb SINE Alu -188 124 1 206 239 0 0 chr1 25233393 25233439 -256960225 - L2 LINE L2 -21 3251 3206 1285 104 0 118 chr1 25233585 25233806 -256959858 - AluJb SINE Alu -117 195 1 882 278 76 31 chr1 25233808 25234160 -256959504 + L2 LINE L2 669 1045 -2269 2384 78 10 0 chr1 25234160 25234454 -256959210 - AluSx SINE Alu -15 297 1 882 278 76 31 chr1 25234454 25234522 -256959142 + L2 LINE L2 1045 1108 -2206 2366 218 75 31 chr1 25234522 25234919 -256958745 + L2 LINE L2 2241 2619 -694 2120 170 31 13 chr1 25234919 25235308 -256958356 + MLT2C1 LTR ERVL 2 397 0 2366 218 75 31 chr1 25235308 25235623 -256958041 + L2 LINE L2 2619 3004 -309 2153 147 3 0 chr1 25235623 25235929 -256957735 - AluSx SINE Alu -5 307 1 2366 218 75 31 chr1 25235929 25235994 -256957670 + L2 LINE L2 3004 3065 -248 624 227 130 5 chr1 25236063 25236248 -256957416 - L1ME3 LINE L1 -66 6096 5889 482 261 94 57 chr1 25236256 25236501 -256957163 + L2 LINE L2 3060 3313 0 2084 133 3 23 chr1 25236503 25236805 -256956859 + AluSx SINE Alu 1 296 -16 461 235 61 15 chr1 25236808 25236940 -256956724 - MIR SINE MIR -109 153 16 387 217 33 22 chr1 25237045 25237137 -256956527 - L2 LINE L2 0 3272 3180 576 171 19 95 chr1 25237312 25237406 -256956258 + MIR SINE MIR 27 106 -156 2427 80 0 16 chr1 25237406 25237718 -256955946 + AluSg SINE Alu 1 307 -3 576 171 19 95 chr1 25237718 25237781 -256955883 + MIR SINE MIR 106 172 -90 272 291 23 23 chr1 25237790 25237876 -256955788 + MER5C DNA MER1_type 1 86 -238 935 179 6 6 chr1 25238035 25238197 -256955467 + FRAM SINE Alu 1 162 -4 199 164 0 36 chr1 25238201 25238256 -256955408 + MER5C DNA MER1_type 270 322 -2 205 319 28 0 chr1 25238263 25238335 -256955329 + MIR SINE MIR 179 252 -10 2504 83 3 0 chr1 25238708 25239020 -256954644 - AluSq SINE Alu 0 313 1 1175 157 64 149 chr1 25239949 25240358 -256953306 - MLT1A2 LTR MaLR 0 374 1 411 311 93 59 chr1 25240402 25240691 -256952973 + L2 LINE L2 2933 3231 -41 222 37 0 0 chr1 25240827 25240854 -256952810 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 636 116 0 26 chr1 25240869 25240970 -256952694 - MSTA LTR MaLR -74 354 239 526 208 0 8 chr1 25241144 25241264 -256952400 - MER103 DNA DNA -46 120 2 254 295 18 80 chr1 25241284 25241327 -256952337 - L2 LINE L2 -4 3309 3265 2947 122 7 2 chr1 25241327 25241753 -256951911 + MSTA LTR MaLR 1 428 0 254 295 18 80 chr1 25241753 25241821 -256951843 - L2 LINE L2 -48 3265 3205 462 300 63 11 chr1 25241861 25242051 -256951613 - MIR SINE MIR -45 217 18 256 247 27 0 chr1 25242105 25242178 -256951486 + (CCCCAG)n Simple_repeat Simple_repeat 1 75 0 640 262 153 13 chr1 25242768 25242997 -256950667 + MIR SINE MIR 2 262 0 515 226 13 44 chr1 25244645 25244804 -256948860 - MER5A DNA MER1_type -29 160 7 205 256 0 0 chr1 25244868 25244911 -256948753 + MIR SINE MIR 111 153 -109 390 306 24 28 chr1 25245999 25246168 -256947496 + MIR3 SINE MIR 10 179 -59 281 225 146 22 chr1 25246192 25246281 -256947383 - MIR3 SINE MIR -46 162 63 2069 115 3 3 chr1 25250576 25250871 -256942793 - AluSg SINE Alu -15 295 1 393 280 23 23 chr1 25250929 25251061 -256942603 - MIR SINE MIR -115 147 16 296 264 11 0 chr1 25251708 25251799 -256941865 + LTR33 LTR ERVL 1 92 -429 250 350 0 0 chr1 25252348 25252488 -256941176 + (TG)n Simple_repeat Simple_repeat 1 140 0 354 23 0 0 chr1 25252602 25252645 -256941019 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 1992 113 0 7 chr1 25252645 25252928 -256940736 - AluSq SINE Alu -32 281 1 189 215 25 63 chr1 25254091 25254170 -256939494 + L2 LINE L2 2932 3007 -265 371 288 146 26 chr1 25254803 25255029 -256938635 + L2 LINE L2 2827 3079 -193 485 328 148 0 chr1 25255306 25255556 -256938108 + L2 LINE L2 2986 3272 0 695 273 78 26 chr1 25256002 25256233 -256937431 + MIR SINE MIR 10 252 -10 250 186 0 0 chr1 25256199 25256242 -256937422 + L2 LINE L2 3264 3306 -7 * 392 346 38 0 chr1 25256400 25256533 -256937131 + MIR3 SINE MIR 22 159 -49 721 238 12 0 chr1 25256534 25256702 -256936962 + MER117 DNA MER1_type 1 170 -27 186 269 39 0 chr1 25256716 25256768 -256936896 + MIR3 SINE MIR 151 204 -4 543 279 67 6 chr1 25257376 25257541 -256936123 + MIR3 SINE MIR 19 193 -15 25 31 0 0 chr1 25258521 25258553 -256935111 + AT_rich Low_complexity Low_complexity 1 32 0 214 229 0 0 chr1 25258912 25258960 -256934704 + MIR SINE MIR 79 126 -136 733 178 104 0 chr1 25259022 25259185 -256934479 + MER58A DNA MER1_type 45 224 0 1980 142 0 16 chr1 25259462 25259778 -256933886 - AluSx SINE Alu -1 311 1 862 272 51 24 chr1 25260045 25260299 -256933365 - MIR SINE MIR 0 262 2 331 339 170 6 chr1 25260774 25260945 -256932719 + L2 LINE L2 2901 3099 -173 334 216 137 69 chr1 25261087 25261189 -256932475 + L2 LINE L2 3203 3311 -2 808 246 23 66 chr1 25261420 25261527 -256932137 - MIR SINE MIR -10 252 142 419 179 0 13 chr1 25261527 25261605 -256932059 + MER116 DNA Mariner 1 77 -3 808 246 23 66 chr1 25261605 25261658 -256932006 - MIR SINE MIR -120 142 88 1673 184 4 0 chr1 25261658 25261936 -256931728 + AluJb SINE Alu 1 279 -33 345 24 0 0 chr1 25261937 25261979 -256931685 + (CA)n Simple_repeat Simple_repeat 2 43 0 808 246 23 66 chr1 25261979 25262071 -256931593 - MIR SINE MIR -173 89 8 708 261 14 33 chr1 25262385 25262600 -256931064 + MIR SINE MIR 49 259 -3 615 285 39 34 chr1 25262607 25262814 -256930850 - MIR SINE MIR -21 241 34 213 241 19 0 chr1 25262881 25262935 -256930729 + MIR SINE MIR 83 137 -71 427 269 293 0 chr1 25263234 25263401 -256930263 + MIR SINE MIR 31 246 -16 2348 89 10 0 chr1 25263469 25263772 -256929892 - AluSx SINE Alu -6 306 1 2032 146 0 3 chr1 25263772 25264073 -256929591 - AluJb SINE Alu -12 300 1 2166 111 3 0 chr1 25264267 25264564 -256929100 - AluSp SINE Alu -15 298 1 2049 92 67 0 chr1 25264572 25264854 -256928810 - AluSp SINE Alu -12 301 1 1658 268 85 12 chr1 25264920 25265635 -256928029 + L2 LINE L2 2451 3113 -200 1878 139 0 57 chr1 25265635 25265966 -256927698 - AluJb SINE Alu 0 312 1 183 100 0 0 chr1 25265966 25265996 -256927668 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2066 113 3 0 chr1 25265996 25266278 -256927386 - AluSx SINE Alu -29 283 1 1658 268 85 12 chr1 25266278 25266353 -256927311 + L2 LINE L2 3112 3299 -14 820 317 95 9 chr1 25266836 25267268 -256926396 - L2 LINE L2 0 3272 2804 250 320 53 53 chr1 25268469 25268619 -256925045 + MIR SINE MIR 67 216 -46 * 756 166 94 155 chr1 25268609 25268874 -256924790 + MIR SINE MIR 14 262 0 470 250 185 20 chr1 25268858 25269058 -256924606 - MIR SINE MIR 0 262 30 * 218 331 111 47 chr1 25269120 25269159 -256924505 + L2 LINE L2 3130 3165 -148 2099 123 7 0 chr1 25269159 25269468 -256924196 - AluSq SINE Alu -2 311 1 218 331 111 47 chr1 25269468 25269600 -256924064 + L2 LINE L2 3165 3312 -1 414 319 89 24 chr1 25269974 25270187 -256923477 - MIR SINE MIR -28 234 8 444 293 0 0 chr1 25270248 25270364 -256923300 - MER117 DNA MER1_type -14 183 68 225 284 37 0 chr1 25270426 25270507 -256923157 - MIR SINE MIR -61 147 64 268 221 132 15 chr1 25270611 25270679 -256922985 + MER91 DNA MER1_type 120 189 -1 269 284 0 71 chr1 25271019 25271160 -256922504 + MLT1H LTR MaLR 29 159 -390 185 318 0 32 chr1 25271479 25271542 -256922122 + L2 LINE L2 3149 3209 -63 1721 201 0 6 chr1 25271687 25272001 -256921663 + AluJb SINE Alu 1 312 0 180 243 100 0 chr1 25272259 25272329 -256921335 - L2 LINE L2 -46 3226 3150 887 212 56 0 chr1 25272537 25272735 -256920929 + MIR SINE MIR 5 213 -49 2778 104 3 0 chr1 25272790 25273164 -256920500 - THE1C LTR MaLR 0 375 1 215 368 74 12 chr1 25273177 25273340 -256920324 - L2 LINE L2 -215 3057 2885 185 203 162 14 chr1 25273434 25273508 -256920156 + L2 LINE L2 3016 3100 -172 592 327 132 27 chr1 25273643 25273805 -256919859 + L2 LINE L2 2726 2870 -402 749 195 54 32 chr1 25273805 25273990 -256919674 + MER53 DNA DNA 1 189 0 592 327 132 27 chr1 25273990 25274312 -256919352 + L2 LINE L2 2870 3271 -1 2018 139 0 0 chr1 25274624 25274911 -256918753 - AluJb SINE Alu -25 287 1 452 321 109 0 chr1 25274920 25275104 -256918560 + MIR SINE MIR 53 256 -6 551 285 20 71 chr1 25275145 25275408 -256918256 + MIR SINE MIR 8 256 -6 2011 93 22 47 chr1 25275443 25275764 -256917900 + AluSq SINE Alu 1 313 0 208 250 0 0 chr1 25275796 25275840 -256917824 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 2392 85 3 0 chr1 25276858 25277165 -256916499 + AluSp SINE Alu 1 308 -5 685 320 84 34 chr1 25277177 25277866 -256915798 + L2 LINE L2 2557 3269 -3 452 259 155 6 chr1 25278099 25278292 -256915372 + MIR SINE MIR 33 251 -11 730 284 95 32 chr1 25278754 25279092 -256914572 - L2 LINE L2 -6 3307 2949 2024 106 67 0 chr1 25279139 25279423 -256914241 - AluSg SINE Alu -5 305 3 1151 59 0 0 chr1 25279424 25279560 -256914104 - AluSq/x SINE Alu -177 136 1 450 358 61 0 chr1 25279876 25280024 -256913640 - L2 LINE L2 0 3272 3116 530 304 22 7 chr1 25280538 25280748 -256912916 - MIR SINE MIR -27 235 17 474 267 17 0 chr1 25281067 25281187 -256912477 - MIR SINE MIR -121 141 20 241 79 0 0 chr1 25281714 25281752 -256911912 + L1MB5 LINE L1 6129 6166 -8 2000 122 7 0 chr1 25281891 25282177 -256911487 + AluSq SINE Alu 1 288 -25 1824 132 45 7 chr1 25282217 25282376 -256911288 - AluJb SINE Alu -10 302 126 2058 122 11 0 chr1 25282376 25282663 -256911001 - AluSx SINE Alu -20 292 3 1824 132 45 7 chr1 25282663 25282791 -256910873 - AluJb SINE Alu -186 126 4 305 333 0 0 chr1 25282797 25282887 -256910777 - MIR3 SINE MIR -50 158 69 298 301 109 6 chr1 25282980 25283147 -256910517 - MIR SINE MIR -29 233 45 251 292 136 0 chr1 25283563 25283700 -256909964 + MIR3 SINE MIR 39 196 -12 481 282 60 8 chr1 25284038 25284233 -256909431 - MIR SINE MIR -34 228 18 451 333 65 19 chr1 25285002 25285218 -256908446 + MIR SINE MIR 4 229 -33 217 289 39 39 chr1 25285263 25285367 -256908297 - L2 LINE L2 -33 3239 3136 978 191 0 50 chr1 25285788 25285987 -256907677 - MER5A DNA MER1_type 0 189 1 378 258 21 0 chr1 25285988 25286081 -256907583 - MIR SINE MIR -83 125 31 778 222 33 0 chr1 25286430 25286615 -256907049 - MIR SINE MIR -54 208 20 230 346 31 0 chr1 25287316 25287446 -256906218 + MIR3 SINE MIR 64 197 -11 634 243 286 4 chr1 25287666 25288121 -256905543 + L2 LINE L2 2722 3312 -1 295 105 35 0 chr1 25288128 25288185 -256905479 + GA-rich Low_complexity Low_complexity 4 62 0 501 270 31 37 chr1 25288727 25288890 -256904774 - MER103 DNA DNA -2 164 3 259 345 134 7 chr1 25289112 25289254 -256904410 - MIR SINE MIR -80 182 23 223 272 250 7 chr1 25289467 25289603 -256904061 + MIR SINE MIR 85 253 -9 350 275 44 0 chr1 25289710 25289801 -256903863 + MIR SINE MIR 51 145 -63 804 261 177 32 chr1 25289820 25290199 -256903465 + MLT1J LTR MaLR 30 463 -48 487 275 107 81 chr1 25290209 25290591 -256903073 + MLT1H LTR MaLR 31 422 -127 389 278 40 24 chr1 25291129 25291255 -256902409 + MIR3 SINE MIR 77 204 -4 2072 268 72 12 chr1 25291268 25291752 -256901912 + MLT1E2 LTR MaLR 1 528 -98 2284 94 0 0 chr1 25291752 25292049 -256901615 - AluSg SINE Alu -13 297 1 2072 268 72 12 chr1 25292049 25292151 -256901513 + MLT1E2 LTR MaLR 528 622 -4 309 327 106 30 chr1 25292175 25292374 -256901290 - MIR SINE MIR -29 233 20 645 249 90 21 chr1 25292572 25292761 -256900903 + MIR SINE MIR 58 259 -3 371 335 84 46 chr1 25292783 25293022 -256900642 - MIR SINE MIR -3 259 12 303 275 61 30 chr1 25293169 25293300 -256900364 + L2 LINE L2 2972 3106 -207 224 290 120 20 chr1 25293345 25293445 -256900219 + MIR SINE MIR 30 139 -123 412 321 130 40 chr1 25293797 25294143 -256899521 - L2 LINE L2 -9 3263 2887 242 281 0 0 chr1 25294227 25294291 -256899373 + L2 LINE L2 2996 3059 -213 408 310 21 14 chr1 25294452 25294597 -256899067 + MIR SINE MIR 5 150 -112 292 342 34 8 chr1 25294757 25294874 -256898790 - MER5A DNA MER1_type -6 183 64 227 345 35 35 chr1 25294779 25294924 -256898740 + MER5A DNA MER1_type 40 184 -5 * 326 286 8 25 chr1 25295007 25295126 -256898538 + MLT1H LTR MaLR 48 164 -385 322 119 36 71 chr1 25295288 25295372 -256898292 + MLT1F LTR MaLR 449 529 -13 2208 123 0 0 chr1 25295894 25296195 -256897469 - AluSx SINE Alu -18 294 1 255 296 230 0 chr1 25296646 25296798 -256896866 + MIR SINE MIR 20 206 -56 349 206 0 0 chr1 25296833 25296901 -256896763 - AluSp/q SINE Alu -3 300 233 2251 122 0 0 chr1 25296839 25297133 -256896531 - AluSq SINE Alu -19 294 1 346 293 35 9 chr1 25297376 25297492 -256896172 + MIR3 SINE MIR 42 160 -48 476 212 40 0 chr1 25297653 25297752 -256895912 + MER5A DNA MER1_type 7 109 -80 554 249 85 42 chr1 25297817 25297982 -256895682 + MER5B DNA MER1_type 1 172 -6 1181 204 58 23 chr1 25298131 25298262 -256895402 - MER4E LTR ERV1 0 766 641 2050 145 7 3 chr1 25298262 25298566 -256895098 - AluSx SINE Alu -5 307 3 1181 204 58 23 chr1 25298566 25298782 -256894882 - MER4E LTR ERV1 -125 641 407 1001 245 68 13 chr1 25299095 25299531 -256894133 - L2 LINE L2 -139 3174 2708 941 171 0 0 chr1 25299533 25299673 -256893991 - FRAM SINE Alu -22 154 15 908 221 45 21 chr1 25299706 25299996 -256893668 - AluJo SINE Alu -1 301 5 1543 185 4 8 chr1 25350064 25350329 -256843335 - AluJb SINE Alu -48 264 1 471 292 36 7 chr1 25350353 25350490 -256843174 - MIR SINE MIR -120 142 2 208 321 25 0 chr1 25351974 25352055 -256841609 + MIR SINE MIR 174 256 -6 731 226 20 35 chr1 25352117 25352316 -256841348 - MIR SINE MIR -32 230 35 498 250 70 53 chr1 25352694 25352922 -256840742 - MER113 DNA MER1_type? -41 480 249 254 142 0 53 chr1 25352938 25353051 -256840613 + (TCCCC)n Simple_repeat Simple_repeat 5 111 0 183 233 0 0 chr1 25353177 25353220 -256840444 + L2 LINE L2 3034 3076 -196 661 320 28 10 chr1 25353337 25353578 -256840086 - MIR SINE MIR -6 256 3 1642 187 11 0 chr1 25353644 25353927 -256839737 + AluJo SINE Alu 1 286 -26 195 129 0 0 chr1 25353931 25353962 -256839702 + (TG)n Simple_repeat Simple_repeat 2 32 0 208 260 20 10 chr1 25353965 25354065 -256839599 + (TA)n Simple_repeat Simple_repeat 1 101 0 291 36 71 18 chr1 25354161 25354217 -256839447 + T-rich Low_complexity Low_complexity 4 62 0 1610 158 62 0 chr1 25354223 25354496 -256839168 - AluJb SINE Alu -9 303 14 279 273 115 21 chr1 25354547 25354715 -256838949 - MIR SINE MIR 0 262 71 281 277 50 50 chr1 25355002 25355103 -256838561 - MIR SINE MIR -115 147 47 256 271 0 24 chr1 25355487 25355572 -256838092 + MIR3 SINE MIR 74 156 -52 276 298 73 51 chr1 25355575 25355753 -256837911 + MER113 DNA MER1_type? 1 182 -339 838 209 50 10 chr1 25355780 25355981 -256837683 + MIR SINE MIR 15 223 -39 914 228 79 0 chr1 25356027 25356255 -256837409 + MER113 DNA MER1_type? 218 463 -58 620 267 33 12 chr1 25356546 25356768 -256836896 + MIR SINE MIR 37 262 0 219 333 74 0 chr1 25356884 25356965 -256836699 + L2 LINE L2 3202 3288 -25 279 79 0 0 chr1 25356967 25357005 -256836659 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 2084 121 3 0 chr1 25357405 25357702 -256835962 + AluSx SINE Alu 1 298 -14 43 0 0 0 chr1 25357946 25357989 -256835675 + AT_rich Low_complexity Low_complexity 1 43 0 2364 86 0 0 chr1 25358064 25358366 -256835298 + AluSg SINE Alu 1 302 -8 895 248 60 16 chr1 25358506 25358756 -256834908 - MIR SINE MIR 0 262 2 473 221 0 0 chr1 25358808 25358903 -256834761 - MIR SINE MIR -108 154 60 253 289 10 29 chr1 25359363 25359467 -256834197 + MIR SINE MIR 161 262 0 409 209 12 0 chr1 25359647 25359733 -256833931 + MIR3 SINE MIR 81 167 -41 582 310 70 41 chr1 25360132 25360675 -256832989 + L2 LINE L2 2691 3249 -23 321 267 193 7 chr1 25360993 25361143 -256832521 - MIR SINE MIR -15 247 70 2194 220 59 42 chr1 25361161 25361664 -256832000 - L1ME3 LINE L1 0 6162 5646 2426 119 37 99 chr1 25361664 25361861 -256831803 + Tigger2a DNA MER2_type 1 209 -2499 1319 166 11 120 chr1 25361861 25362211 -256831453 - AluJo SINE Alu 0 312 1 2426 119 37 99 chr1 25362211 25362476 -256831188 + Tigger2a DNA MER2_type 209 434 0 2194 220 59 42 chr1 25362476 25362563 -256831101 - L1ME3 LINE L1 -516 5646 5562 486 220 0 108 chr1 25362908 25362971 -256830693 - MIR SINE MIR -24 238 170 1993 139 0 7 chr1 25362971 25363280 -256830384 + AluSx SINE Alu 1 307 -5 486 220 0 108 chr1 25363280 25363402 -256830262 - MIR SINE MIR -92 170 73 197 265 108 36 chr1 25363469 25363552 -256830112 + MIR SINE MIR 169 257 -5 1805 168 0 7 chr1 25363552 25363850 -256829814 + AluJo SINE Alu 1 296 -16 1280 163 28 67 chr1 25363979 25364262 -256829402 + AluJo SINE Alu 39 310 -2 242 269 84 8 chr1 25364615 25364734 -256828930 + MIR SINE MIR 19 146 -116 354 362 66 0 chr1 25364766 25364918 -256828746 + MIR SINE MIR 4 165 -97 264 229 157 0 chr1 25365172 25365242 -256828422 - L2 LINE L2 -1 3312 3232 287 297 0 27 chr1 25365840 25365951 -256827713 - MIR SINE MIR -97 165 58 197 307 14 14 chr1 25365970 25366110 -256827554 - L2 LINE L2 -261 3011 2872 453 250 13 0 chr1 25366314 25366434 -256827230 + MER20B DNA MER1_type 74 198 -21 2182 123 0 0 chr1 25367228 25367536 -256826128 + AluSx SINE Alu 1 308 -4 936 182 0 6 chr1 25367536 25367695 -256825969 + AluJo/FRAM SINE Alu 134 291 -21 29 0 0 0 chr1 25367704 25367733 -256825931 + AT_rich Low_complexity Low_complexity 1 29 0 231 167 0 37 chr1 25367983 25368037 -256825627 + L2 LINE L2 3262 3313 0 635 280 48 31 chr1 25368123 25368350 -256825314 + MIR SINE MIR 4 233 -29 505 316 100 53 chr1 25368729 25369390 -256824274 - L2 LINE L2 -117 3155 2455 194 284 40 0 chr1 25369535 25369609 -256824055 - MIR SINE MIR -81 127 51 608 179 154 19 chr1 25370204 25370366 -256823298 + MIR SINE MIR 24 207 -55 243 310 0 23 chr1 25370762 25370849 -256822815 + MIR SINE MIR 39 123 -85 397 266 44 9 chr1 25371561 25371674 -256821990 - MIR3 SINE MIR -51 157 41 382 229 74 41 chr1 25372176 25372298 -256821366 + MIR SINE MIR 20 145 -63 378 292 82 6 chr1 25372981 25373152 -256820512 + MIR SINE MIR 73 256 -6 2132 103 17 0 chr1 25373448 25373750 -256819914 - AluSq SINE Alu -6 307 1 282 261 29 0 chr1 25373905 25373974 -256819690 - MIR SINE MIR -61 147 77 445 297 114 6 chr1 25374352 25374527 -256819137 + MIR SINE MIR 35 228 -34 304 170 0 0 chr1 25374934 25374987 -256818677 - MIR SINE MIR -107 155 103 302 245 55 96 chr1 25375462 25375587 -256818077 - MIR3 SINE MIR -61 147 67 1687 185 3 0 chr1 25375587 25375885 -256817779 - AluJo SINE Alu -13 299 1 302 245 55 96 chr1 25375885 25375940 -256817724 - MIR3 SINE MIR -141 67 11 504 222 31 7 chr1 25376510 25376652 -256817012 - MIR3 SINE MIR -46 162 17 346 252 118 0 chr1 25377066 25377185 -256816479 - MIR3 SINE MIR -3 205 73 297 331 8 8 chr1 25377579 25377700 -256815964 + L2 LINE L2 2937 3057 -215 563 214 107 19 chr1 25377940 25378099 -256815565 + MIR SINE MIR 20 192 -70 988 197 43 35 chr1 25378752 25379006 -256814658 + MIR SINE MIR 5 260 -2 230 340 20 0 chr1 25379148 25379248 -256814416 + MER117 DNA MER1_type 96 197 0 292 267 20 30 chr1 25379254 25379355 -256814309 - L2 LINE L2 -1 3271 3172 2119 123 7 0 chr1 25379480 25379790 -256813874 - AluSx SINE Alu 0 312 1 296 339 37 18 chr1 25380178 25380287 -256813377 + MIR SINE MIR 38 148 -114 191 200 22 22 chr1 25380310 25380355 -256813309 + L2 LINE L2 3208 3252 -20 375 121 0 0 chr1 25381113 25381171 -256812493 + (TCCA)n Simple_repeat Simple_repeat 2 59 0 261 303 26 0 chr1 25381171 25381247 -256812417 - L2 LINE L2 0 3272 3195 659 191 53 2 chr1 25381293 25381432 -256812232 + MIR SINE MIR 22 172 -36 342 226 235 0 chr1 25381530 25381645 -256812019 + MIR3 SINE MIR 20 161 -47 203 152 0 0 chr1 25381871 25381904 -256811760 + CT-rich Low_complexity Low_complexity 3 35 0 375 314 5 43 chr1 25382711 25382896 -256810768 + GA-rich Low_complexity Low_complexity 3 180 0 186 43 0 0 chr1 25383312 25383335 -256810329 + (ATTG)n Simple_repeat Simple_repeat 2 24 0 208 283 0 0 chr1 25383341 25383401 -256810263 - L2 LINE L2 0 3272 3213 210 364 26 0 chr1 25383505 25383582 -256810082 + MIR SINE MIR 71 149 -59 1048 172 0 6 chr1 25383706 25383880 -256809784 - AluJo SINE Alu -15 297 125 363 333 0 0 chr1 25383880 25383970 -256809694 + L1MC4 LINE L1 6614 6703 -1339 * 377 237 79 72 chr1 25383904 25383989 -256809675 - L1MC4 LINE L1 -1339 6703 6615 1969 137 3 0 chr1 25383989 25384282 -256809382 - AluJb SINE Alu -18 294 1 377 237 79 72 chr1 25384282 25384335 -256809329 - L1MC4 LINE L1 -1427 6615 6564 233 346 45 0 chr1 25384506 25384639 -256809025 + L2 LINE L2 2988 3126 -146 315 296 0 0 chr1 25384977 25385065 -256808599 + MIR SINE MIR 63 150 -58 395 307 55 20 chr1 25386069 25386271 -256807393 + MIR SINE MIR 29 237 -25 256 310 78 0 chr1 25386441 25386557 -256807107 - MIR SINE MIR -114 148 24 231 88 0 0 chr1 25386924 25386958 -256806706 + (CA)n Simple_repeat Simple_repeat 1 34 0 425 241 65 0 chr1 25387922 25388030 -256805634 + MIR SINE MIR 39 153 -109 617 330 14 5 chr1 25388078 25388293 -256805371 - MIR SINE MIR -10 252 36 180 316 86 22 chr1 25388441 25388580 -256805084 - MIR SINE MIR -109 153 6 233 322 11 23 chr1 25388884 25388971 -256804693 - MIR SINE MIR -63 145 60 909 281 65 17 chr1 25389470 25389960 -256803704 - L2 LINE L2 -11 3302 2729 1007 219 154 41 chr1 25390008 25390450 -256803214 - L2 LINE L2 -1003 2311 1820 471 243 61 5 chr1 25390485 25390643 -256803021 + MIR SINE MIR 43 206 -56 470 298 110 11 chr1 25390690 25390881 -256802783 + MIR SINE MIR 40 249 -13 207 260 210 10 chr1 25390942 25391042 -256802622 + MIR SINE MIR 20 139 -123 639 297 14 24 chr1 25391383 25391595 -256802069 + L2 LINE L2 3093 3302 -11 373 255 34 43 chr1 25391831 25392009 -256801655 + MIR SINE MIR 18 188 -65 234 0 0 0 chr1 25392152 25392178 -256801486 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 223 293 0 61 chr1 25392220 25392302 -256801362 + MIR SINE MIR 40 116 -92 270 257 119 10 chr1 25392402 25392503 -256801161 + MIR SINE MIR 35 146 -62 309 258 195 8 chr1 25392882 25393010 -256800654 + MIR SINE MIR 21 172 -90 194 305 9 48 chr1 25393342 25393447 -256800217 + L2 LINE L2 3000 3100 -172 557 274 109 0 chr1 25393754 25393929 -256799735 + MIR SINE MIR 40 233 -29 268 323 169 27 chr1 25394168 25394428 -256799236 + L2 LINE L2 2976 3272 0 371 106 15 0 chr1 25395019 25395085 -256798579 + (TGGA)n Simple_repeat Simple_repeat 3 69 0 1391 272 26 49 chr1 25395626 25396030 -256797634 + L1ME4a LINE L1 5483 5868 -253 847 144 0 58 chr1 25396030 25396169 -256797495 + FLAM_C SINE Alu 3 133 0 1391 272 26 49 chr1 25396169 25396415 -256797249 + L1ME4a LINE L1 5868 6118 -3 521 271 103 0 chr1 25396522 25396677 -256796987 - MIR SINE MIR -63 199 29 472 302 12 6 chr1 25397400 25397572 -256796092 + L2 LINE L2 2889 3061 -211 502 265 176 56 chr1 25397733 25398057 -256795607 + L2 LINE L2 2951 3313 0 2113 135 3 0 chr1 25398587 25398891 -256794773 + AluSx SINE Alu 1 305 -7 340 239 31 85 chr1 25398924 25399054 -256794610 + MER5A DNA MER1_type 66 188 -1 1334 190 209 38 chr1 25399438 25399883 -256793781 + MLT1F1 LTR MaLR 1 534 -33 1785 140 49 25 chr1 25399883 25400169 -256793495 - AluJo SINE Alu -16 296 4 1334 190 209 38 chr1 25400169 25400211 -256793453 + MLT1F1 LTR MaLR 534 567 0 533 360 135 20 chr1 25400226 25400626 -256793038 + L2 LINE L2 2826 3271 -1 332 302 48 8 chr1 25401353 25401549 -256792115 - MIR SINE MIR -5 257 4 279 195 126 11 chr1 25401565 25401652 -256792012 + MER113 DNA MER1_type? 3 99 -422 452 224 327 6 chr1 25401656 25401821 -256791843 + MIR SINE MIR 1 218 -44 726 277 67 32 chr1 25401843 25402128 -256791536 + MLT1I LTR MaLR 50 344 -65 192 292 0 0 chr1 25403318 25403366 -256790298 - L2 LINE L2 -86 3186 3139 237 333 50 10 chr1 25403667 25403766 -256789898 - L2 LINE L2 -79 3193 3091 184 250 40 40 chr1 25404010 25404086 -256789578 + L2 LINE L2 2905 2980 -292 236 243 40 40 chr1 25404393 25404467 -256789197 - MIR SINE MIR -108 154 81 492 231 45 8 chr1 25404511 25404645 -256789019 + MIR3 SINE MIR 23 161 -47 713 285 77 9 chr1 25405322 25405543 -256788121 - MIR SINE MIR -1 261 26 556 301 57 21 chr1 25405636 25405854 -256787810 + MIR SINE MIR 21 256 -6 344 310 62 16 chr1 25405853 25405982 -256787682 + MIR SINE MIR 120 254 -8 * 2449 59 0 0 chr1 25406294 25406600 -256787064 - AluY SINE Alu -5 306 1 387 342 75 35 chr1 25407517 25407716 -256785948 - L2 LINE L2 -3 3269 3063 423 293 86 0 chr1 25407867 25408007 -256785657 - MIR3 SINE MIR -49 159 8 262 272 37 25 chr1 25408744 25408825 -256784839 - MIR SINE MIR -55 153 72 259 300 0 22 chr1 25409212 25409302 -256784362 + MIR3 SINE MIR 4 91 -117 1674 121 0 16 chr1 25409361 25409632 -256784032 + AluSx SINE Alu 49 312 0 203 222 0 37 chr1 25409643 25409697 -256783967 + MIR SINE MIR 100 151 -111 390 272 39 0 chr1 25410263 25410366 -256783298 - MIR SINE MIR -78 184 78 354 361 79 41 chr1 25410412 25410753 -256782911 + L2 LINE L2 2881 3234 -38 467 266 22 35 chr1 25410809 25411035 -256782629 + MER113 DNA MER1_type? 2 224 -297 267 282 94 28 chr1 25411299 25411512 -256782152 - L2 LINE L2 -216 3056 2830 551 292 116 5 chr1 25412247 25412463 -256781201 - MIR SINE MIR -3 259 20 408 264 29 0 chr1 25412602 25412715 -256780949 + MIR SINE MIR 30 145 -63 270 261 29 0 chr1 25412785 25412854 -256780810 + L2 LINE L2 3169 3239 -33 227 230 52 126 chr1 25413107 25413242 -256780422 + L2 LINE L2 2949 3073 -199 477 320 55 62 chr1 25413249 25413524 -256780140 - L2 LINE L2 -2 3270 2998 535 320 128 5 chr1 25413615 25413818 -256779846 - MIR SINE MIR -33 229 2 181 278 83 68 chr1 25413859 25413992 -256779672 - L2 LINE L2 -467 2847 2713 430 171 18 90 chr1 25414397 25414508 -256779156 + MIR SINE MIR 90 192 -70 336 292 104 8 chr1 25414590 25414754 -256778910 - MIR SINE MIR -29 179 2 471 265 30 54 chr1 25414835 25415001 -256778663 - MIR SINE MIR -91 171 10 229 306 45 36 chr1 25415649 25415760 -256777904 - MIR SINE MIR -65 197 86 322 315 147 0 chr1 25415912 25416096 -256777568 - MIR SINE MIR -15 247 37 415 333 40 37 chr1 25416221 25416494 -256777170 + L2 LINE L2 2943 3216 -56 233 291 51 0 chr1 25416651 25416730 -256776934 - MIR SINE MIR -42 220 138 219 139 0 0 chr1 25416730 25416766 -256776898 + (CCCA)n Simple_repeat Simple_repeat 4 39 0 425 297 9 0 chr1 25416876 25416987 -256776677 - MIR SINE MIR -110 152 41 353 331 12 25 chr1 25417329 25417489 -256776175 + (TCCA)n Simple_repeat Simple_repeat 4 161 0 186 246 0 0 chr1 25417491 25417552 -256776112 + (CCCA)n Simple_repeat Simple_repeat 4 64 0 283 319 11 11 chr1 25417773 25417864 -256775800 + (TCCA)n Simple_repeat Simple_repeat 2 92 0 240 306 34 102 chr1 25417864 25417939 -256775725 - L2 LINE L2 -3 3310 3248 1974 137 0 17 chr1 25417939 25418238 -256775426 + AluSx SINE Alu 8 301 -11 240 306 34 102 chr1 25418238 25418309 -256775355 - L2 LINE L2 -65 3248 3174 349 272 37 120 chr1 25418662 25418879 -256774785 - L2 LINE L2 -188 3084 2886 1614 166 13 23 chr1 25418925 25419232 -256774432 - AluJo SINE Alu -8 304 1 441 272 8 16 chr1 25419346 25419471 -256774193 - MIR SINE MIR -119 143 20 527 286 25 82 chr1 25420018 25420263 -256773401 - MIR SINE MIR -4 258 28 277 148 19 19 chr1 25421036 25421090 -256772574 + MIR SINE MIR 117 170 -92 485 245 158 33 chr1 25421269 25421453 -256772211 - MIR SINE MIR 0 262 56 2181 112 0 0 chr1 25422072 25422375 -256771289 - AluSx SINE Alu -9 303 1 2016 100 50 0 chr1 25422894 25423175 -256770489 - AluSx SINE Alu -16 296 2 434 271 124 40 chr1 25423196 25423373 -256770291 + MIR SINE MIR 70 261 -1 2243 214 47 20 chr1 25423484 25423974 -256769690 + MLT1D LTR MaLR 1 503 -2 539 212 18 0 chr1 25424348 25424461 -256769203 - MIR SINE MIR -79 183 69 320 335 47 14 chr1 25424877 25425081 -256768583 - MIR SINE MIR -1 261 52 308 257 71 0 chr1 25425117 25425230 -256768434 - MIR SINE MIR -55 153 33 247 367 31 0 chr1 25425765 25425863 -256767801 + MIR3 SINE MIR 97 197 -11 336 202 114 43 chr1 25426000 25426128 -256767536 - MIR SINE MIR -54 154 58 437 181 23 99 chr1 25426196 25426367 -256767297 - L1ME4a LINE L1 0 6121 5964 253 258 18 126 chr1 25426427 25426594 -256767070 + MER5B DNA MER1_type 17 165 -13 * 318 254 0 14 chr1 25426531 25426602 -256767062 - MER5A DNA MER1_type -105 84 15 369 271 133 13 chr1 25426617 25426768 -256766896 + MIR SINE MIR 20 188 -74 202 354 167 5 chr1 25427292 25427484 -256766180 + L2 LINE L2 2963 3185 -87 221 237 39 13 chr1 25427516 25427601 -256766063 + MIR SINE MIR 106 195 -13 316 324 29 0 chr1 25428355 25428460 -256765204 - MIR SINE MIR -62 146 39 227 235 74 0 chr1 25428460 25428541 -256765123 - L2 LINE L2 -308 3005 2919 939 94 35 0 chr1 25428599 25428770 -256764894 + (TCCA)n Simple_repeat Simple_repeat 3 179 0 203 349 0 0 chr1 25428770 25428836 -256764828 - L2 LINE L2 -4 3268 3203 307 316 31 67 chr1 25428865 25429043 -256764621 - MIR3 SINE MIR -11 197 28 2704 23 0 0 chr1 25429422 25429729 -256763935 + AluY SINE Alu 1 307 -4 556 239 63 7 chr1 25430661 25430803 -256762861 - MIR SINE MIR -104 158 9 1718 166 0 49 chr1 25431263 25431588 -256762076 - AluJo SINE Alu -2 310 2 225 313 138 0 chr1 25431725 25431805 -256761859 + MIR SINE MIR 158 248 -14 2188 106 3 3 chr1 25432008 25432310 -256761354 + AluSx SINE Alu 1 302 -10 226 385 0 0 chr1 25432347 25432430 -256761234 + MIR SINE MIR 110 192 -70 626 267 36 6 chr1 25432971 25433136 -256760528 + MIR SINE MIR 5 174 -88 347 226 48 0 chr1 25433286 25433370 -256760294 + MIR3 SINE MIR 72 159 -49 2111 108 0 0 chr1 25433381 25433659 -256760005 + AluSq SINE Alu 1 278 -35 231 36 0 0 chr1 25433661 25433689 -256759975 + (GAAA)n Simple_repeat Simple_repeat 2 29 0 264 170 0 0 chr1 25433756 25433803 -256759861 + MIR SINE MIR 91 137 -71 316 297 61 74 chr1 25434510 25434658 -256759006 - MIR SINE MIR -47 215 70 2220 104 0 7 chr1 25434863 25435172 -256758492 - AluSg SINE Alu -3 307 1 619 278 13 0 chr1 25435203 25435354 -256758310 - MIR SINE MIR -82 180 28 669 240 223 5 chr1 25435737 25436288 -256757376 + L2 LINE L2 2548 3217 -96 215 265 14 122 chr1 25436438 25436585 -256757079 + MIR SINE MIR 49 179 -83 637 307 123 45 chr1 25436815 25437340 -256756324 - L2 LINE L2 0 3272 2700 691 309 0 20 chr1 25438264 25438468 -256755196 + MIR SINE MIR 50 249 -13 189 0 0 0 chr1 25438482 25438503 -256755161 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 336 331 84 21 chr1 25438505 25438647 -256755017 - L2 LINE L2 -15 3298 3148 319 236 0 0 chr1 25438648 25438720 -256754944 - MIR SINE MIR -105 157 86 891 138 0 8 chr1 25438788 25438918 -256754746 + FLAM_C SINE Alu 2 130 -3 210 37 0 0 chr1 25438919 25438946 -256754718 + (T)n Simple_repeat Simple_repeat 1 27 0 209 146 55 0 chr1 25438946 25439001 -256754663 + A-rich Low_complexity Low_complexity 3 60 0 346 264 22 0 chr1 25439071 25439162 -256754502 + MIR SINE MIR 45 137 -71 261 297 155 0 chr1 25439690 25439838 -256753826 + L2 LINE L2 2830 3000 -272 389 281 61 73 chr1 25439931 25440008 -256753656 + MIR SINE MIR 83 159 -103 2404 93 0 3 chr1 25440008 25440321 -256753343 + AluSx SINE Alu 1 312 0 389 281 61 73 chr1 25440321 25440407 -256753257 + MIR SINE MIR 159 244 -18 270 200 11 21 chr1 25440442 25440537 -256753127 + GA-rich Low_complexity Low_complexity 1 94 0 268 271 12 0 chr1 25440648 25440733 -256752931 + (TGGA)n Simple_repeat Simple_repeat 3 88 0 469 287 23 6 chr1 25441353 25441527 -256752137 + (TCCA)n Simple_repeat Simple_repeat 1 177 0 275 347 135 24 chr1 25442100 25442270 -256751394 + MIR SINE MIR 26 214 -48 186 43 0 0 chr1 25442470 25442493 -256751171 + (CA)n Simple_repeat Simple_repeat 2 24 0 319 208 42 10 chr1 25442535 25442631 -256751033 + L1MC4 LINE L1 7928 8026 -16 462 310 23 0 chr1 25442666 25442795 -256750869 + MIR SINE MIR 30 161 -101 517 261 91 35 chr1 25442917 25443116 -256750548 - MIR SINE MIR -42 220 11 465 279 55 55 chr1 25443680 25443899 -256749765 + L2 LINE L2 2839 3057 -215 318 295 103 19 chr1 25443874 25444030 -256749634 - MIR3 SINE MIR -38 170 2 * 365 329 48 24 chr1 25444044 25444211 -256749453 + L3 LINE CR1 1218 1388 -189 270 204 191 39 chr1 25444190 25444293 -256749371 + MIR SINE MIR 39 154 -65 * 287 254 100 9 chr1 25444323 25444433 -256749231 + Charlie8 DNA MER1_type 4 123 -2294 883 154 0 0 chr1 25444433 25444569 -256749095 + FLAM_C SINE Alu 1 136 -7 1128 156 0 0 chr1 25444590 25444757 -256748907 + AluSg/x SINE Alu 109 275 -37 180 0 0 0 chr1 25444757 25444777 -256748887 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1724 188 10 7 chr1 25444814 25445122 -256748542 + AluJb SINE Alu 1 309 -3 387 268 21 0 chr1 25445128 25445225 -256748439 + Charlie8 DNA MER1_type 156 254 -2163 410 297 0 0 chr1 25445683 25445794 -256747870 - MIR SINE MIR -68 194 84 212 291 209 0 chr1 25445920 25446006 -256747658 - L2 LINE L2 -1 3312 3209 199 250 0 125 chr1 25445993 25446097 -256747567 - L2 LINE L2 -3213 101 11 * 790 289 128 7 chr1 25446468 25446876 -256746788 + MLT1H1 LTR MaLR 76 532 -23 454 351 7 7 chr1 25446966 25447117 -256746547 - MIR3 SINE MIR -12 196 46 641 207 67 0 chr1 25447206 25447370 -256746294 - Charlie8 DNA MER1_type -2170 247 73 311 315 107 27 chr1 25447389 25447538 -256746126 + MIR SINE MIR 41 201 -61 751 254 57 14 chr1 25447821 25448030 -256745634 + MIR SINE MIR 13 230 -32 2341 71 3 10 chr1 25448043 25448353 -256745311 + AluSq SINE Alu 2 309 -4 505 277 36 24 chr1 25448680 25448921 -256744743 - MIR SINE MIR -1 261 21 450 290 52 13 chr1 25449060 25449215 -256744449 - MIR SINE MIR -29 233 73 1985 125 0 23 chr1 25450091 25450395 -256743269 + AluSx SINE Alu 1 297 -15 191 302 151 47 chr1 25450837 25450943 -256742721 - MIR SINE MIR -132 130 14 614 303 110 0 chr1 25451641 25451895 -256741769 - L2 LINE L2 -21 3292 3011 239 286 65 26 chr1 25451906 25451983 -256741681 - L2 LINE L2 -61 3211 3132 214 347 36 31 chr1 25452044 25452237 -256741427 + L2 LINE L2 2690 2883 -431 246 293 0 85 chr1 25453209 25453315 -256740349 - MIR SINE MIR -65 197 101 260 255 69 20 chr1 25453328 25453430 -256740234 - MIR3 SINE MIR -34 174 68 244 294 140 9 chr1 25454437 25454544 -256739120 + MIR SINE MIR 45 164 -71 26 30 0 0 chr1 25454991 25455024 -256738640 + GC_rich Low_complexity Low_complexity 1 33 0 27 49 0 0 chr1 25455197 25455238 -256738426 + GC_rich Low_complexity Low_complexity 1 41 0 39 22 0 0 chr1 25455284 25455330 -256738334 + GC_rich Low_complexity Low_complexity 1 46 0 35 92 0 0 chr1 25455491 25455589 -256738075 + GC_rich Low_complexity Low_complexity 1 98 0 199 137 20 20 chr1 25455636 25455687 -256737977 + (CCCG)n Simple_repeat Simple_repeat 3 53 0 52 58 0 0 chr1 25455757 25455844 -256737820 + GC_rich Low_complexity Low_complexity 1 87 0 46 68 0 0 chr1 25455955 25456043 -256737621 + GC_rich Low_complexity Low_complexity 1 88 0 185 244 0 0 chr1 25457685 25457726 -256735938 - L2 LINE L2 -8 3305 3265 408 272 140 7 chr1 25457835 25458037 -256735627 - MIR SINE MIR -14 248 18 292 182 18 0 chr1 25458081 25458136 -256735528 - MIR SINE MIR -66 142 87 183 234 26 78 chr1 25458508 25458585 -256735079 + L2 LINE L2 3109 3181 -91 251 204 56 0 chr1 25458818 25458872 -256734792 - MIR SINE MIR -65 143 87 762 329 121 9 chr1 25458966 25459395 -256734269 - L2 LINE L2 -10 3303 2827 466 232 20 21 chr1 25459617 25459762 -256733902 + MIR3 SINE MIR 37 185 -23 6205 45 2 0 chr1 25460110 25460896 -256732768 - L1PA5 LINE L1 -7 6147 5360 353 256 12 0 chr1 25460899 25460981 -256732683 + MIR SINE MIR 44 126 -82 1433 154 77 35 chr1 25461017 25461328 -256732336 - MER33 DNA MER1_type 0 324 1 255 222 14 42 chr1 25461403 25461475 -256732189 - L2 LINE L2 -183 3089 3020 300 333 52 30 chr1 25461551 25461686 -256731978 - HAL1b LINE L1 -7 1341 1204 349 353 0 8 chr1 25461718 25461840 -256731824 - L1ME4a LINE L1 -206 5915 5795 591 259 79 0 chr1 25462314 25462503 -256731161 + MIR SINE MIR 42 245 -17 193 384 17 23 chr1 25462620 25462792 -256730872 + L2 LINE L2 2721 2891 -423 180 250 0 77 chr1 25463085 25463137 -256730527 + MIR SINE MIR 82 129 -133 970 195 6 0 chr1 25463139 25463303 -256730361 - FRAM SINE Alu -1 165 1 283 228 119 10 chr1 25463456 25463557 -256730107 + L2 LINE L2 3160 3271 -1 396 247 78 13 chr1 25463795 25463948 -256729716 - MIR SINE MIR -56 152 35 312 297 59 8 chr1 25463984 25464102 -256729562 + MIR3 SINE MIR 10 133 -75 195 146 0 0 chr1 25464651 25464692 -256728972 + (TGGA)n Simple_repeat Simple_repeat 4 44 0 1983 148 0 16 chr1 25464960 25465277 -256728387 + AluJo SINE Alu 1 312 0 210 268 93 31 chr1 25465545 25465642 -256728022 - MIR3 SINE MIR -93 115 13 2060 126 7 0 chr1 25465859 25466153 -256727511 - AluSq SINE Alu -17 296 1 512 241 8 23 chr1 25466153 25466286 -256727378 - MIR3 SINE MIR -7 201 71 5540 48 4 6 chr1 25467111 25467795 -256725869 - L1PA8 LINE L1 -7 6165 5483 771 252 38 9 chr1 25467917 25468127 -256725537 + MIR SINE MIR 2 217 -45 339 130 0 0 chr1 25468272 25468326 -256725338 + (CA)n Simple_repeat Simple_repeat 2 55 0 286 328 46 23 chr1 25468345 25468476 -256725188 - MIR SINE MIR -1 261 128 300 303 46 9 chr1 25468572 25468681 -256724983 - MIR3 SINE MIR -28 180 68 205 309 48 12 chr1 25468942 25469026 -256724638 - L2 LINE L2 -63 3209 3123 1144 171 18 142 chr1 25469072 25469222 -256724442 + AluYb8 SINE Alu 1 168 -140 2269 92 0 0 chr1 25469222 25469517 -256724147 + AluSx SINE Alu 1 295 -17 1144 171 18 142 chr1 25469517 25469535 -256724129 + AluYb8 SINE Alu 168 187 -121 1723 137 7 0 chr1 25469535 25469805 -256723859 + AluSq SINE Alu 42 313 0 1144 171 18 142 chr1 25469805 25469974 -256723690 + AluYb8 SINE Alu 187 297 -11 426 306 0 30 chr1 25470138 25470272 -256723392 - MIR SINE MIR -111 151 22 1195 163 30 75 chr1 25470290 25470441 -256723223 + MER33 DNA MER1_type 6 162 -2423 819 113 7 71 chr1 25470441 25470582 -256723082 - FLAM_C SINE Alu 0 133 2 1195 163 30 75 chr1 25470582 25470679 -256722985 + MER33 DNA MER1_type 162 238 -2347 2113 120 7 0 chr1 25470679 25470988 -256722676 - AluSx SINE Alu -1 311 1 1195 163 30 75 chr1 25470988 25471069 -256722595 + MER33 DNA MER1_type 238 321 -3 1077 178 14 33 chr1 25471080 25471293 -256722371 + MER3 DNA MER1_type 1 209 0 286 302 21 10 chr1 25471414 25471510 -256722154 - MIR SINE MIR -143 119 23 2070 110 7 0 chr1 25471906 25472196 -256721468 - AluSg SINE Alu -18 292 1 534 247 103 0 chr1 25472296 25472442 -256721222 + MIR SINE MIR 50 210 -52 2340 209 52 15 chr1 25472542 25473077 -256720587 + MLT1F1 LTR MaLR 1 555 -12 503 295 58 6 chr1 25473084 25473240 -256720424 - MIR SINE MIR -59 203 40 1327 104 0 63 chr1 25473295 25473536 -256720128 - AluSx SINE Alu 0 310 85 516 189 27 14 chr1 25473554 25473702 -256719962 + Charlie5 DNA MER1_type 2433 2582 -30 421 185 12 12 chr1 25473713 25473794 -256719870 + MER3 DNA MER1_type 1 81 -128 621 119 0 0 chr1 25473794 25473878 -256719786 - AluSx SINE Alu -228 85 2 188 188 0 0 chr1 25473992 25474024 -256719640 + L3 LINE CR1 320 351 -1226 336 152 165 0 chr1 25474074 25474153 -256719511 - Zaphod DNA AcHobo 0 4031 3940 583 145 0 0 chr1 25474155 25474238 -256719426 + AluS SINE Alu 3 85 -227 410 204 10 0 chr1 25474246 25474344 -256719320 + (TATG)n Simple_repeat Simple_repeat 2 100 0 857 213 6 6 chr1 25474345 25474514 -256719150 + AluJb SINE Alu 135 303 -9 2757 188 57 3 chr1 25474514 25475147 -256718517 - Zaphod DNA AcHobo -81 3950 3284 2509 205 83 42 chr1 25475128 25475728 -256717936 - Zaphod DNA AcHobo -3349 682 58 * 181 272 239 0 chr1 25475728 25475820 -256717844 + MER5C DNA MER1_type 3 116 -208 1146 173 20 28 chr1 25476022 25476270 -256717394 - L1MB2 LINE L1 -1 6170 5925 2340 90 3 0 chr1 25476276 25476586 -256717078 - AluSp SINE Alu -1 312 2 427 220 40 0 chr1 25476587 25476687 -256716977 + MER5C DNA MER1_type 221 324 0 315 179 18 0 chr1 25476690 25476746 -256716918 - MER115 DNA AcHobo -636 57 1 277 270 50 20 chr1 25476746 25476846 -256716818 + MIR3 SINE MIR 104 206 -2 1049 169 0 0 chr1 25477328 25477506 -256716158 - AluSg/x SINE Alu -1 309 132 2342 48 0 7 chr1 25477506 25477796 -256715868 - AluY SINE Alu -10 301 14 394 192 41 0 chr1 25477841 25477914 -256715750 + Tigger4(Zombi) DNA MER2_type 2656 2731 0 286 315 55 20 chr1 25477937 25478083 -256715581 - L1ME4a LINE L1 -188 5933 5783 329 285 80 58 chr1 25478148 25478460 -256715204 - L1ME4a LINE L1 -483 5681 5363 291 323 113 0 chr1 25478461 25478594 -256715070 - MIR3 SINE MIR -28 180 33 412 226 0 144 chr1 25478694 25478792 -256714872 + MIR3 SINE MIR 79 151 -57 2137 123 0 3 chr1 25478792 25479100 -256714564 - AluSg SINE Alu -3 307 1 412 226 0 144 chr1 25479100 25479147 -256714517 + MIR3 SINE MIR 151 203 -5 303 288 0 113 chr1 25479180 25479340 -256714324 - MIR SINE MIR -49 213 72 520 286 94 82 chr1 25479450 25479863 -256713801 - L2 LINE L2 -19 3253 2836 246 260 79 94 chr1 25479893 25480020 -256713644 - L2 LINE L2 0 3313 3189 328 224 71 12 chr1 25480033 25480118 -256713546 - Charlie1 DNA MER1_type 0 2761 2672 1213 143 11 0 chr1 25480149 25480338 -256713326 + AluSg/x SINE Alu 115 305 -5 725 176 5 37 chr1 25480338 25480525 -256713139 - Charlie1 DNA MER1_type -117 2644 2464 278 203 162 0 chr1 25480523 25480597 -256713067 - Charlie1 DNA MER1_type -2669 92 7 * 633 259 204 5 chr1 25481587 25481803 -256711861 - MIR SINE MIR -1 261 3 242 289 108 56 chr1 25481839 25482088 -256711576 - L2 LINE L2 -157 3115 2854 217 366 23 19 chr1 25482174 25482390 -256711274 + L2 LINE L2 2299 2515 -799 294 29 0 0 chr1 25482937 25482972 -256710692 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 2264 96 0 0 chr1 25483212 25483504 -256710160 - AluSx SINE Alu -20 292 1 1272 291 87 43 chr1 25483684 25484190 -256709474 - MLT1K LTR MaLR -46 542 15 407 227 34 25 chr1 25484269 25484388 -256709276 + MIR SINE MIR 25 144 -118 891 300 64 0 chr1 25484412 25484662 -256709002 + MLT1C LTR MaLR 200 465 -2 434 296 22 45 chr1 25484662 25484841 -256708823 + L2 LINE L2 3138 3312 -1 240 250 404 0 chr1 25485120 25485224 -256708440 + MIR SINE MIR 113 258 -4 1985 125 3 0 chr1 25485225 25485520 -256708144 + AluSx SINE Alu 1 296 -16 280 290 48 32 chr1 25485864 25485988 -256707676 + MIR3 SINE MIR 49 174 -34 393 277 15 23 chr1 25486087 25486217 -256707447 - MIR SINE MIR -62 146 18 311 352 14 0 chr1 25486755 25486897 -256706767 + GA-rich Low_complexity Low_complexity 1 144 0 189 281 0 18 chr1 25487163 25487220 -256706444 + MIR SINE MIR 86 141 -67 713 185 6 0 chr1 25487246 25487419 -256706245 + (TG)n Simple_repeat Simple_repeat 1 174 0 618 180 8 25 chr1 25487439 25487717 -256705947 + (TG)n Simple_repeat Simple_repeat 1 273 0 680 161 0 32 chr1 25487730 25487916 -256705748 + (TG)n Simple_repeat Simple_repeat 1 180 0 323 193 11 0 chr1 25487928 25488016 -256705648 + (TG)n Simple_repeat Simple_repeat 2 90 0 369 223 0 0 chr1 25488130 25488224 -256705440 + (TG)n Simple_repeat Simple_repeat 2 95 0 405 294 117 6 chr1 25488533 25488713 -256704951 - MIR SINE MIR 0 262 63 251 150 50 33 chr1 25488786 25488846 -256704818 + MIR SINE MIR 85 145 -63 339 220 124 0 chr1 25488949 25489044 -256704620 + MIR SINE MIR 58 163 -45 244 243 88 40 chr1 25489714 25489862 -256703802 - MIR3 SINE MIR -21 187 33 2106 114 0 7 chr1 25490111 25490410 -256703254 + AluSx SINE Alu 1 297 -15 933 169 103 0 chr1 25490530 25490725 -256702939 - MER20 DNA MER1_type -4 215 1 312 306 174 21 chr1 25491117 25491627 -256702037 - L2 LINE L2 -228 3044 2465 1271 202 32 16 chr1 25491781 25492033 -256701631 - MIR SINE MIR -4 258 3 518 319 27 22 chr1 25493590 25493775 -256699889 + MIR SINE MIR 60 245 -17 665 295 24 0 chr1 25494039 25494270 -256699394 + MIR SINE MIR 26 261 -1 692 288 107 0 chr1 25494280 25494495 -256699169 + MIR SINE MIR 18 255 -7 375 183 28 0 chr1 25494898 25494969 -256698695 - MIR3 SINE MIR -19 189 117 386 190 51 0 chr1 25495022 25495101 -256698563 - MIR SINE MIR -66 142 60 332 180 100 10 chr1 25495332 25495432 -256698232 - MIR SINE MIR -74 188 80 181 182 0 0 chr1 25495986 25496019 -256697645 - MIR SINE MIR -8 254 222 1911 161 0 0 chr1 25496031 25496335 -256697329 - AluJo SINE Alu -8 304 1 518 268 132 15 chr1 25496347 25496552 -256697112 - MIR SINE MIR -1 261 33 2024 139 0 0 chr1 25496727 25497021 -256696643 + AluJb SINE Alu 1 294 -18 2039 154 0 0 chr1 25497131 25497443 -256696221 + AluSx SINE Alu 1 312 0 645 147 0 0 chr1 25497450 25497559 -256696105 + (GGAA)n Simple_repeat Simple_repeat 4 112 0 209 305 17 0 chr1 25497661 25497720 -256695944 + MIR SINE MIR 150 209 -53 352 311 40 27 chr1 25498281 25498429 -256695235 - MIR3 SINE MIR -49 159 10 210 37 0 0 chr1 25498590 25498617 -256695047 + (TG)n Simple_repeat Simple_repeat 2 28 0 514 265 154 12 chr1 25498954 25499116 -256694548 + MER5A DNA MER1_type 4 188 -1 756 284 70 0 chr1 25499158 25499359 -256694305 - MIR SINE MIR 0 262 48 199 360 14 68 chr1 25499567 25499714 -256693950 + MER5A DNA MER1_type 51 189 0 182 353 86 9 chr1 25499731 25499805 -256693859 - MIR SINE MIR -109 153 71 185 286 0 29 chr1 25499805 25499875 -256693789 + MIR3 SINE MIR 1 68 -140 1697 195 43 0 chr1 25499914 25500237 -256693427 + MER58B DNA MER1_type 5 341 0 673 199 143 0 chr1 25500245 25500406 -256693258 - MER5A DNA MER1_type 0 189 6 355 276 19 0 chr1 25500646 25500751 -256692913 + L1ME LINE L1 5575 5681 -440 256 344 33 0 chr1 25500802 25500892 -256692772 - MIR SINE MIR -158 104 12 434 322 169 6 chr1 25500931 25501108 -256692556 + MIR SINE MIR 21 226 -36 355 244 157 0 chr1 25501333 25501448 -256692216 + MIR SINE MIR 109 241 -21 245 294 141 0 chr1 25501498 25501590 -256692074 + MIR SINE MIR 47 151 -111 896 130 0 22 chr1 25501639 25501777 -256691887 + FLAM_C SINE Alu 1 135 -8 265 188 10 16 chr1 25501778 25501875 -256691789 + MER5A DNA MER1_type 29 189 0 243 227 15 15 chr1 25502200 25502266 -256691398 + MLT1K LTR MaLR 516 581 -7 2048 144 0 3 chr1 25502598 25502904 -256690760 + AluJb SINE Alu 1 305 -7 470 287 25 49 chr1 25503410 25503632 -256690032 + MIR SINE MIR 5 220 -42 185 317 37 24 chr1 25504033 25504115 -256689549 - L2 LINE L2 -3 3310 3228 365 339 107 0 chr1 25504667 25504844 -256688820 + MIR SINE MIR 46 241 -21 296 221 115 10 chr1 25504915 25505019 -256688645 - L2 LINE L2 0 3272 3158 202 221 52 78 chr1 25505022 25505099 -256688565 - L2 LINE L2 0 3272 3198 353 281 33 25 chr1 25505781 25505902 -256687762 + MIR3 SINE MIR 85 206 -2 328 284 37 37 chr1 25506030 25506192 -256687472 - MER117 DNA MER1_type -29 168 7 405 324 129 0 chr1 25506200 25506425 -256687239 + MIR SINE MIR 4 257 -5 339 255 96 0 chr1 25506474 25506568 -256687096 - MIR SINE MIR -70 192 90 289 376 52 3 chr1 25506633 25506798 -256686866 + MIR SINE MIR 42 212 -50 1021 129 2 12 chr1 25507139 25507638 -256686026 + (TCCA)n Simple_repeat Simple_repeat 1 493 0 785 168 6 0 chr1 25507654 25507833 -256685831 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 796 271 57 92 chr1 25507836 25508345 -256685319 - L2 LINE L2 0 3313 2823 289 291 38 0 chr1 25508465 25508544 -256685120 - MIR SINE MIR -107 155 74 193 349 36 12 chr1 25508716 25508769 -256684895 - L3 LINE CR1 -15 1562 1512 3125 153 19 75 chr1 25508769 25509166 -256684498 - L1MB5 LINE L1 0 6174 5756 4560 168 81 6 chr1 25509166 25509969 -256683695 + MER21B LTR ERV1 1 863 0 3125 153 19 75 chr1 25509969 25510011 -256683653 - L1MB5 LINE L1 -418 5756 5713 866 146 0 0 chr1 25510011 25510141 -256683523 - FLAM_A SINE Alu -3 130 1 3125 153 19 75 chr1 25510141 25510339 -256683325 - L1MB5 LINE L1 -461 5713 5572 193 349 36 12 chr1 25510339 25510368 -256683296 - L3 LINE CR1 -65 1512 1478 417 306 27 20 chr1 25510513 25510660 -256683004 - L3 LINE CR1 -83 1494 1347 361 244 32 62 chr1 25510847 25510993 -256682671 - MIR SINE MIR -63 145 51 473 301 57 14 chr1 25511352 25511565 -256682099 - MIR SINE MIR -9 253 34 201 382 0 0 chr1 25511637 25511713 -256681951 + MIR SINE MIR 185 260 -2 575 264 96 0 chr1 25511814 25511992 -256681672 + MIR SINE MIR 65 259 -3 315 293 252 7 chr1 25512413 25512560 -256681104 + MIR SINE MIR 34 216 -46 240 270 40 0 chr1 25512898 25512972 -256680692 - MIR SINE MIR -88 120 44 183 317 67 17 chr1 25513022 25513142 -256680522 + MER5A DNA MER1_type 42 167 -22 * 271 378 18 0 chr1 25513062 25513173 -256680491 - MER5A DNA MER1_type -74 115 3 310 288 136 15 chr1 25513646 25513778 -256679886 + MIR SINE MIR 22 169 -93 405 283 20 0 chr1 25514092 25514191 -256679473 - MIR3 SINE MIR -2 206 106 341 259 167 0 chr1 25514196 25514304 -256679360 - L2 LINE L2 -7 3306 3181 2186 110 0 16 chr1 25514778 25515088 -256678576 - AluSx SINE Alu -7 305 1 448 266 106 53 chr1 25515154 25515405 -256678259 + MIR SINE MIR 4 254 -8 471 215 0 0 chr1 25516102 25516223 -256677441 + (TG)n Simple_repeat Simple_repeat 2 122 0 323 370 0 22 chr1 25516223 25516361 -256677303 + L1MC4 LINE L1 6561 6695 -1347 351 252 0 0 chr1 25516381 25516492 -256677172 + (TG)n Simple_repeat Simple_repeat 1 111 0 333 380 0 0 chr1 25516493 25516593 -256677071 + L1MC4 LINE L1 6604 6703 -1339 324 337 0 22 chr1 25516573 25516665 -256676999 - L1MC4 LINE L1 -1339 6703 6614 * 279 203 0 0 chr1 25516682 25516741 -256676923 + (TG)n Simple_repeat Simple_repeat 2 60 0 197 250 23 0 chr1 25516812 25516856 -256676808 - L2 LINE L2 -95 3177 3133 300 303 84 22 chr1 25517115 25517293 -256676371 - L2 LINE L2 -213 3059 2871 276 304 0 0 chr1 25517730 25517809 -256675855 - L2 LINE L2 -54 3259 3181 406 220 0 0 chr1 25517849 25517940 -256675724 + MIR SINE MIR 171 261 -1 273 273 11 11 chr1 25517944 25518032 -256675632 + (TTCA)n Simple_repeat Simple_repeat 1 88 0 206 170 0 38 chr1 25519309 25519362 -256674302 + GA-rich Low_complexity Low_complexity 2 52 0 342 269 19 10 chr1 25519477 25519581 -256674083 + MIR SINE MIR 35 139 -69 329 276 39 45 chr1 25519628 25519784 -256673880 + Charlie8 DNA MER1_type 13 167 -2250 240 208 10 52 chr1 25519795 25519891 -256673773 + MER69A DNA AcHobo 30 121 -56 667 250 104 5 chr1 25519892 25520112 -256673552 - L1MD2 LINE L1 -34 6325 6084 357 204 0 11 chr1 25520126 25520214 -256673450 + MER69A DNA AcHobo 91 177 0 251 269 43 0 chr1 25520234 25520327 -256673337 + Charlie8 DNA MER1_type 192 288 -2129 425 244 111 15 chr1 25520345 25520480 -256673184 - MIR3 SINE MIR -50 158 11 226 316 59 26 chr1 25520688 25520813 -256672851 + MIR SINE MIR 30 155 -61 371 307 110 6 chr1 25521058 25521221 -256672443 + MIR SINE MIR 81 260 -2 778 249 73 10 chr1 25521742 25521947 -256671717 - MIR SINE MIR -3 259 42 210 397 25 8 chr1 25522014 25522135 -256671529 - MIR SINE MIR -55 207 85 201 39 0 0 chr1 25522443 25522469 -256671195 + (CAG)n Simple_repeat Simple_repeat 3 28 0 342 0 0 0 chr1 25523121 25523159 -256670505 + (TG)n Simple_repeat Simple_repeat 2 39 0 345 229 95 9 chr1 25523246 25523351 -256670313 - MIR SINE MIR -73 189 76 248 273 20 20 chr1 25524589 25524688 -256668976 + MIR SINE MIR 36 134 -74 186 43 0 0 chr1 25525312 25525335 -256668329 + (TG)n Simple_repeat Simple_repeat 1 23 0 185 305 34 17 chr1 25525758 25525817 -256667847 + MIR SINE MIR 8 67 -195 2361 82 0 13 chr1 25525842 25526158 -256667506 - AluSx SINE Alu 0 312 1 224 264 92 11 chr1 25526200 25526287 -256667377 + MIR SINE MIR 107 200 -62 * 736 251 72 14 chr1 25526286 25526493 -256667171 - MIR SINE MIR 0 262 44 2121 118 0 3 chr1 25526542 25526847 -256666817 + AluSq SINE Alu 1 304 -9 384 189 40 0 chr1 25527844 25527918 -256665746 + MIR SINE MIR 73 149 -113 478 254 58 0 chr1 25528296 25528442 -256665222 - MIR SINE MIR -65 143 43 283 246 18 18 chr1 25529102 25529216 -256664448 + (CA)n Simple_repeat Simple_repeat 1 114 0 213 94 0 0 chr1 25529331 25529363 -256664301 - L2 LINE L2 -5 3308 3277 361 328 67 12 chr1 25530272 25530483 -256663181 + MIR SINE MIR 16 234 -28 1914 145 0 7 chr1 25530529 25530825 -256662839 + AluJb SINE Alu 13 306 -6 8828 172 69 51 chr1 25530825 25532546 -256661118 + MER52A LTR ERV1 4 1755 0 291 341 65 0 chr1 25532635 25532758 -256660906 - L3 LINE CR1 -101 1476 1346 433 231 12 142 chr1 25533094 25533263 -256660401 + MIR3 SINE MIR 35 181 -27 2140 110 0 13 chr1 25533283 25533582 -256660082 - AluSx SINE Alu -17 295 1 2323 86 6 13 chr1 25533603 25533917 -256659747 - AluSx SINE Alu 0 312 1 212 250 75 12 chr1 25534016 25534096 -256659568 - MIR SINE MIR -62 146 62 631 258 3 97 chr1 25534129 25534427 -256659237 - LTR37B LTR ERV1 -2 466 197 684 254 14 5 chr1 25534454 25534663 -256659001 - LTR37B LTR ERV1 -252 216 6 2047 122 7 0 chr1 25535384 25535679 -256657985 + AluSp SINE Alu 1 297 -16 1305 220 81 63 chr1 25535798 25536293 -256657371 - L1ME3 LINE L1 -6 6156 5653 308 357 0 0 chr1 25536771 25536883 -256656781 + MIR SINE MIR 41 152 -110 219 114 0 0 chr1 25537015 25537050 -256656614 + (A)n Simple_repeat Simple_repeat 1 35 0 534 273 55 12 chr1 25537563 25537728 -256655936 - MIR SINE MIR -19 243 72 954 145 0 7 chr1 25537735 25537912 -256655752 - AluSx SINE Alu 0 310 135 2122 110 0 3 chr1 25537912 25538204 -256655460 - AluSc SINE Alu -18 291 1 301 286 92 8 chr1 25538388 25538507 -256655157 - MIR SINE MIR -45 217 89 318 141 248 50 chr1 25538512 25538633 -256655031 + MER53 DNA DNA 1 145 -44 219 213 98 16 chr1 25538956 25539017 -256654647 + MIR3 SINE MIR 90 155 -53 236 269 104 30 chr1 25539033 25539167 -256654497 - MER5A DNA MER1_type -22 167 24 351 274 92 7 chr1 25540488 25540669 -256652995 + MLT1I LTR MaLR 269 409 0 583 307 24 28 chr1 25541159 25541371 -256652293 + MIR SINE MIR 51 261 -1 * 630 303 46 34 chr1 25541321 25541559 -256652105 - MIR SINE MIR -14 248 8 1901 144 48 129 chr1 25541678 25541977 -256651687 - L1MB3 LINE L1 -1 6182 5945 1837 89 12 4 chr1 25541977 25542223 -256651441 - AluSx SINE Alu -63 249 2 1901 144 48 129 chr1 25542223 25542466 -256651198 - L1MB3 LINE L1 -238 5945 5684 932 94 0 8 chr1 25542798 25542810 -256650854 - AluSx SINE Alu -185 127 116 405 0 0 0 chr1 25542810 25542855 -256650809 + (TAG)n Simple_repeat Simple_repeat 1 45 0 932 94 0 8 chr1 25542855 25542970 -256650694 - AluSx SINE Alu -196 116 1 1577 182 7 17 chr1 25543063 25543200 -256650464 + AluJo SINE Alu 1 138 -174 2061 125 13 0 chr1 25543200 25543503 -256650161 + AluSq SINE Alu 3 309 -4 1577 182 7 17 chr1 25543503 25543661 -256650003 + AluJo SINE Alu 138 293 -19 811 323 5 0 chr1 25543878 25544101 -256649563 + MIR SINE MIR 39 262 0 185 291 175 10 chr1 25544680 25544783 -256648881 + MIR SINE MIR 20 139 -69 2069 120 0 0 chr1 25544843 25545151 -256648513 + AluSx SINE Alu 1 308 0 228 236 170 38 chr1 25545291 25545397 -256648267 + MIR3 SINE MIR 15 134 -74 320 264 0 0 chr1 25545524 25545596 -256648068 + MIR SINE MIR 80 151 -111 2294 96 0 0 chr1 25545648 25545974 -256647690 + AluSx SINE Alu 1 326 0 395 215 47 116 chr1 25546868 25547040 -256646624 + L1ME3 LINE L1 5968 6127 -35 381 219 37 0 chr1 25547176 25547258 -256646406 - MIR SINE MIR -70 192 108 202 268 0 18 chr1 25547274 25547330 -256646334 + G-rich Low_complexity Low_complexity 5 59 0 369 292 62 0 chr1 25547417 25547530 -256646134 - MIR SINE MIR -118 144 25 221 233 0 9 chr1 25548545 25548621 -256645043 + A-rich Low_complexity Low_complexity 1 75 0 241 208 19 0 chr1 25548699 25548752 -256644912 + MIR SINE MIR 74 127 -81 326 345 6 51 chr1 25548892 25549069 -256644595 - MIR3 SINE MIR -24 184 16 468 333 48 14 chr1 25549152 25549362 -256644302 + MIR SINE MIR 13 229 -33 290 288 73 9 chr1 25549865 25549992 -256643672 + MIR SINE MIR 9 143 -65 537 226 15 30 chr1 25550147 25550280 -256643384 - L2 LINE L2 0 3313 3183 533 229 0 0 chr1 25550364 25550485 -256643179 + MIR SINE MIR 40 145 -63 222 37 0 0 chr1 25550856 25550883 -256642781 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 206 333 43 0 chr1 25550897 25550966 -256642698 - L2 LINE L2 -6 3266 3195 198 315 55 14 chr1 25550971 25551044 -256642620 - L2 LINE L2 -4 3268 3193 2257 107 0 0 chr1 25551112 25551412 -256642252 + AluSc SINE Alu 1 300 -9 403 288 19 0 chr1 25552091 25552251 -256641413 + (CAGA)n Simple_repeat Simple_repeat 3 165 0 387 315 0 0 chr1 25552767 25552878 -256640786 - MIR SINE MIR -72 190 80 426 326 156 18 chr1 25553388 25553612 -256640052 - MIR SINE MIR 0 262 8 687 256 26 21 chr1 25554022 25554213 -256639451 + MIR SINE MIR 7 198 -64 409 335 147 20 chr1 25554286 25554579 -256639085 - L3 LINE CR1 -129 1448 1119 273 233 17 0 chr1 25555138 25555198 -256638466 + MIR SINE MIR 94 154 -108 228 256 35 12 chr1 25555597 25555683 -256637981 + (CA)n Simple_repeat Simple_repeat 2 89 0 234 0 0 0 chr1 25555686 25555712 -256637952 + (T)n Simple_repeat Simple_repeat 1 26 0 771 174 0 30 chr1 25555737 25555869 -256637795 - AluJb SINE Alu -178 134 7 1858 170 0 13 chr1 25556150 25556586 -256637078 + AluJo SINE Alu 5 436 0 814 304 9 5 chr1 25556780 25556994 -256636670 + MIR SINE MIR 35 249 -13 418 303 42 14 chr1 25557846 25557988 -256635676 - MIR SINE MIR -33 229 84 260 363 101 56 chr1 25558071 25558498 -256635166 - L2 LINE L2 -18 3254 2809 1396 197 72 14 chr1 25558526 25558646 -256635018 + AluJb SINE Alu 1 113 -199 262 0 26 26 chr1 25558646 25558685 -256634979 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1396 197 72 14 chr1 25558685 25558854 -256634810 + AluJb SINE Alu 113 307 -5 790 319 62 3 chr1 25558866 25559204 -256634460 - L2 LINE L2 -455 2859 2502 549 114 23 0 chr1 25559393 25559481 -256634183 - L1MC2 LINE L1 -2 6342 6253 1149 315 72 22 chr1 25559745 25560035 -256633629 - L1ME3 LINE L1 -215 5947 5673 1381 237 101 14 chr1 25560035 25560453 -256633211 + LTR16A1 LTR ERVL 2 455 -2 1149 315 72 22 chr1 25560453 25561537 -256632127 - L1ME3 LINE L1 -489 5673 4507 231 322 75 98 chr1 25561600 25561895 -256631769 + L2 LINE L2 2981 3268 -4 204 333 173 7 chr1 25562041 25562191 -256631473 + MIR SINE MIR 34 208 -54 310 302 60 17 chr1 25563689 25563805 -256629859 + MIR3 SINE MIR 41 161 -47 894 146 23 7 chr1 25566176 25566480 -256627184 + CT-rich Low_complexity Low_complexity 1 309 0 859 151 0 27 chr1 25566507 25566692 -256626972 + CT-rich Low_complexity Low_complexity 1 180 0 223 118 78 0 chr1 25566711 25566762 -256626902 + CT-rich Low_complexity Low_complexity 3 57 0 881 180 0 6 chr1 25566775 25566953 -256626711 + CT-rich Low_complexity Low_complexity 2 178 0 416 291 14 80 chr1 25567823 25568036 -256625628 - MIR SINE MIR -13 249 51 390 245 58 32 chr1 25569529 25569593 -256624071 + MER117 DNA MER1_type 2 63 -134 1930 128 14 0 chr1 25569593 25569924 -256623740 + AluSx SINE Alu 1 335 0 390 245 58 32 chr1 25569924 25570013 -256623651 + MER117 DNA MER1_type 63 160 -37 261 299 13 0 chr1 25570767 25570844 -256622820 + MIR SINE MIR 67 144 -64 543 322 57 9 chr1 25570926 25571137 -256622527 + MIR SINE MIR 10 230 -32 378 351 40 17 chr1 25571657 25571831 -256621833 - MIR SINE MIR -44 218 41 733 213 53 12 chr1 25572003 25572172 -256621492 - MER5A DNA MER1_type 0 189 14 969 114 8 0 chr1 25572283 25572415 -256621249 + AluSq/x SINE Alu 1 133 -179 2152 109 0 0 chr1 25572420 25572714 -256620950 + AluSg SINE Alu 1 294 -16 340 318 62 4 chr1 25574054 25574240 -256619424 + MIR SINE MIR 1 192 -62 327 370 118 14 chr1 25574486 25574902 -256618762 - L2 LINE L2 -25 3288 2830 1719 165 14 0 chr1 25575031 25575316 -256618348 + AluJb SINE Alu 2 290 -22 976 96 0 0 chr1 25575318 25575443 -256618221 - AluJo/FLAM SINE Alu -187 125 1 458 321 211 22 chr1 25575694 25576233 -256617431 - L2 LINE L2 -985 2329 1689 234 361 14 0 chr1 25576374 25576446 -256617218 + L2 LINE L2 3241 3313 0 300 267 105 19 chr1 25576516 25576621 -256617043 + MIR SINE MIR 30 143 -119 572 204 70 14 chr1 25576944 25577086 -256616578 - MIR SINE MIR -11 251 102 331 339 18 0 chr1 25580202 25580311 -256613353 - MIR SINE MIR -107 155 45 211 341 114 0 chr1 25580603 25580735 -256612929 - MER5A DNA MER1_type -5 184 38 190 303 123 8 chr1 25580913 25581035 -256612629 - L2 LINE L2 0 3272 3137 345 314 31 106 chr1 25581304 25581727 -256611937 + L2 LINE L2 2855 3245 -27 469 284 75 40 chr1 25582738 25582939 -256610725 + MIR SINE MIR 22 229 -33 311 320 123 0 chr1 25582945 25583067 -256610597 - MIR SINE MIR -82 180 44 410 226 85 9 chr1 25583877 25583983 -256609681 + MIR SINE MIR 30 143 -65 270 330 9 19 chr1 25584948 25585054 -256608610 + MIR SINE MIR 48 152 -56 329 239 133 62 chr1 25585317 25585477 -256608187 + MIR SINE MIR 4 188 -74 425 279 118 0 chr1 25585717 25585853 -256607811 + MIR SINE MIR 59 210 -52 2355 86 3 3 chr1 25586112 25586425 -256607239 + AluSq SINE Alu 1 313 0 260 292 15 0 chr1 25587029 25587094 -256606570 + (CACG)n Simple_repeat Simple_repeat 3 68 0 499 243 0 17 chr1 25587094 25587275 -256606389 + (CATA)n Simple_repeat Simple_repeat 1 178 0 411 289 0 0 chr1 25587246 25587419 -256606245 + (CA)n Simple_repeat Simple_repeat 2 174 0 * 274 154 0 0 chr1 25587422 25587474 -256606190 - MER4-int LTR ERV1 -5436 1162 1111 250 167 42 0 chr1 25587476 25587524 -256606140 + (CATA)n Simple_repeat Simple_repeat 4 53 0 522 275 2 0 chr1 25587529 25588041 -256605623 + (CA)n Simple_repeat Simple_repeat 1 513 0 431 275 0 11 chr1 25588054 25588236 -256605428 + (CA)n Simple_repeat Simple_repeat 1 180 0 680 225 0 3 chr1 25588299 25588662 -256605002 + (CA)n Simple_repeat Simple_repeat 1 361 0 438 219 0 0 chr1 25588686 25588791 -256604873 + (CA)n Simple_repeat Simple_repeat 1 105 0 1013 198 39 0 chr1 25589114 25589321 -256604343 + MIR SINE MIR 13 227 -35 183 280 40 27 chr1 25590388 25590463 -256603201 - L2 LINE L2 -40 3273 3198 289 344 0 11 chr1 25590711 25590804 -256602860 + L2 LINE L2 2665 2756 -558 4384 166 39 15 chr1 25590983 25591300 -256602364 + L1MB3 LINE L1 5178 5486 -697 2173 113 0 0 chr1 25591300 25591591 -256602073 + AluSx SINE Alu 1 291 -21 4384 166 39 15 chr1 25591591 25592255 -256601409 + L1MB3 LINE L1 5486 6183 0 2337 68 0 3 chr1 25592272 25592567 -256601097 + AluY SINE Alu 1 294 -17 397 293 27 14 chr1 25593113 25593260 -256600404 + MIR SINE MIR 102 250 -12 263 290 29 80 chr1 25593814 25593951 -256599713 + MIR SINE MIR 69 197 -62 275 247 90 11 chr1 25594204 25594293 -256599371 - MIR SINE MIR -104 158 63 183 345 45 55 chr1 25594412 25594500 -256599164 - L3b LINE CR1 -6 1577 1489 1671 152 85 0 chr1 25594500 25594783 -256598881 - AluJb SINE Alu -5 307 1 183 345 45 55 chr1 25594783 25594804 -256598860 - L3b LINE CR1 -94 1489 1469 * 234 258 15 15 chr1 25594784 25594850 -256598814 + MER5A DNA MER1_type 47 112 -77 510 289 15 43 chr1 25595055 25595269 -256598395 + MIR SINE MIR 6 217 -45 366 326 0 0 chr1 25596138 25596313 -256597351 + (TG)n Simple_repeat Simple_repeat 2 176 0 532 294 68 4 chr1 25596396 25596630 -256597034 - MIR SINE MIR -1 261 11 325 118 15 44 chr1 25597053 25597121 -256596543 + MIR SINE MIR 72 137 -71 607 259 17 7 chr1 25597540 25597721 -256595943 + MIR SINE MIR 2 191 -58 186 346 62 0 chr1 25597789 25597870 -256595794 + L2 LINE L2 3176 3261 -11 521 325 50 10 chr1 25597888 25598088 -256595576 - MIR SINE MIR -2 260 53 243 248 291 21 chr1 25598245 25598386 -256595278 + MIR SINE MIR 8 186 -76 274 268 43 73 chr1 25598523 25598687 -256594977 + MIR3 SINE MIR 39 197 -11 270 248 29 86 chr1 25599967 25600072 -256593592 + MIR SINE MIR 95 193 -69 266 212 25 25 chr1 25602751 25602869 -256590795 + (CCG)n Simple_repeat Simple_repeat 1 118 0 39 38 0 0 chr1 25602893 25602946 -256590718 + GC_rich Low_complexity Low_complexity 1 53 0 180 0 0 0 chr1 25603076 25603096 -256590568 + (CCG)n Simple_repeat Simple_repeat 2 21 0 365 268 41 0 chr1 25603665 25603762 -256589902 + MIR SINE MIR 80 180 -82 450 313 130 19 chr1 25604218 25604426 -256589238 - MIR SINE MIR -12 250 20 315 317 25 17 chr1 25604499 25604619 -256589045 + L3 LINE CR1 1412 1532 -45 264 269 99 14 chr1 25604688 25604829 -256588835 - Charlie8 DNA MER1_type -2196 221 69 1811 146 19 44 chr1 25604982 25605297 -256588367 + AluJb SINE Alu 1 307 -5 281 306 99 8 chr1 25606155 25606276 -256587388 + L2 LINE L2 3141 3272 0 480 237 35 9 chr1 25606657 25606771 -256586893 + MIR SINE MIR 100 216 -46 287 172 26 86 chr1 25607475 25607555 -256586109 - Charlie5 DNA MER1_type -5 2580 2508 2351 105 0 0 chr1 25607555 25607868 -256585796 + AluSq SINE Alu 1 313 0 287 172 26 86 chr1 25607868 25607903 -256585761 - Charlie5 DNA MER1_type -77 2508 2472 365 317 78 14 chr1 25607947 25608089 -256585575 - L2 LINE L2 0 3313 3163 2133 120 0 7 chr1 25608178 25608477 -256585187 - AluSq SINE Alu -16 297 1 185 235 118 0 chr1 25608557 25608608 -256585056 - L3 LINE CR1 -3 1574 1518 484 287 34 106 chr1 25609449 25609864 -256583800 + L2 LINE L2 2417 2801 -513 279 208 0 0 chr1 25610326 25610379 -256583285 + MIR SINE MIR 66 118 -90 541 265 38 43 chr1 25610448 25610633 -256583031 - MIR SINE MIR -64 198 15 434 272 56 31 chr1 25611008 25611170 -256582494 + MIR SINE MIR 23 188 -74 330 26 0 0 chr1 25611410 25611463 -256582201 + (TG)n Simple_repeat Simple_repeat 1 92 0 330 26 0 0 chr1 25611463 25611502 -256582162 + (TG)n Simple_repeat Simple_repeat 1 39 0 235 288 144 15 chr1 25612083 25612215 -256581449 - L2 LINE L2 -3 3269 3121 419 218 50 10 chr1 25612314 25612415 -256581249 - MIR SINE MIR -88 120 16 248 319 0 0 chr1 25612670 25612742 -256580922 - MIR SINE MIR -141 121 50 354 263 21 100 chr1 25613649 25613889 -256579775 + L2 LINE L2 2883 3103 -169 349 215 86 11 chr1 25615293 25615386 -256578278 + MIR SINE MIR 43 142 -66 189 239 22 0 chr1 25616112 25616158 -256577506 + L2 LINE L2 3266 3312 -1 389 187 13 0 chr1 25616982 25617057 -256576607 + MIR SINE MIR 88 163 -99 837 162 15 0 chr1 25617057 25617193 -256576471 + AluSq/x SINE Alu 1 138 -174 310 222 0 0 chr1 25617195 25617258 -256576406 + MIR SINE MIR 162 224 -38 2153 91 0 3 chr1 25617258 25617544 -256576120 + AluSx SINE Alu 1 285 -27 390 291 199 15 chr1 25617662 25617858 -256575806 - MIR SINE MIR -3 259 28 841 191 4 4 chr1 25618409 25618961 -256574703 + GA-rich Low_complexity Low_complexity 1 551 0 541 198 6 6 chr1 25618982 25619139 -256574525 + GA-rich Low_complexity Low_complexity 1 157 0 325 347 44 49 chr1 25619140 25619365 -256574299 + L1MEd LINE L1 955 1178 -4941 414 0 0 0 chr1 25619931 25619977 -256573687 + (CA)n Simple_repeat Simple_repeat 2 47 0 226 229 16 16 chr1 25620038 25620099 -256573565 + MIR SINE MIR 98 158 -104 24 0 0 0 chr1 25620101 25620125 -256573539 + AT_rich Low_complexity Low_complexity 1 24 0 1085 158 0 0 chr1 25620145 25620309 -256573355 - FRAM SINE Alu -12 164 1 270 325 0 0 chr1 25620313 25620393 -256573271 + MIR SINE MIR 151 230 -32 381 206 0 0 chr1 25620737 25620810 -256572854 + MER3 DNA MER1_type 40 112 -97 486 235 8 0 chr1 25620811 25620930 -256572734 + MER3 DNA MER1_type 2505 2624 0 287 294 22 0 chr1 25620939 25621031 -256572633 - MIR3 SINE MIR -14 194 101 359 314 105 0 chr1 25621561 25621714 -256571950 + MIR SINE MIR 19 187 -75 493 301 111 65 chr1 25621761 25621904 -256571760 - L2 LINE L2 -2 3311 3176 2146 114 0 3 chr1 25621904 25622201 -256571463 - AluSx SINE Alu -16 296 1 493 301 111 65 chr1 25622201 25622336 -256571328 - L2 LINE L2 -137 3176 3020 398 276 89 0 chr1 25622400 25622523 -256571141 + MIR SINE MIR 31 164 -98 339 245 43 58 chr1 25622680 25622819 -256570845 - L2 LINE L2 -223 3049 2913 445 201 158 14 chr1 25623327 25623466 -256570198 + MIR SINE MIR 49 207 -55 279 399 29 7 chr1 25623549 25623687 -256569977 - MIR3 SINE MIR -66 142 2 260 299 88 48 chr1 25623979 25624126 -256569538 + L2 LINE L2 3073 3225 -47 399 218 95 28 chr1 25624178 25624248 -256569416 - MER106B DNA MER1_type -2 1057 993 2282 112 0 0 chr1 25624248 25624560 -256569104 - AluSx SINE Alu 0 312 1 399 218 95 28 chr1 25624560 25624677 -256568987 - MER106B DNA MER1_type -66 993 28 223 318 34 23 chr1 25624928 25625016 -256568648 - MIR3 SINE MIR -11 197 109 521 262 77 32 chr1 25625327 25625548 -256568116 + L2 LINE L2 2297 2527 -787 442 182 101 0 chr1 25625580 25625679 -256567985 - Cheshire DNA MER1_type -1655 765 657 1273 273 140 12 chr1 25625679 25626274 -256567390 + L2 LINE L2 2617 3294 -19 1863 134 16 29 chr1 25626427 25626733 -256566931 + AluJb SINE Alu 2 303 -9 408 222 38 48 chr1 25626738 25626911 -256566753 + L1MB2 LINE L1 5890 6049 -135 813 166 43 6 chr1 25626912 25627075 -256566589 + L1MB3 LINE L1 6012 6180 -3 352 294 73 7 chr1 25627810 25627946 -256565718 - MIR SINE MIR -116 146 2 227 267 221 0 chr1 25628457 25628543 -256565121 - MIR SINE MIR -69 139 35 200 276 295 0 chr1 25628552 25628657 -256565007 - MIR3 SINE MIR -4 204 69 279 228 68 0 chr1 25629072 25629158 -256564506 + MIR SINE MIR 66 156 -62 192 292 62 15 chr1 25629424 25629489 -256564175 + MIR SINE MIR 25 92 -170 772 221 149 11 chr1 25629514 25629695 -256563969 - MER3 DNA MER1_type 0 209 4 245 360 68 31 chr1 25629872 25630033 -256563631 + MIR SINE MIR 52 218 -44 273 352 67 43 chr1 25630050 25630260 -256563404 + MIR SINE MIR 2 216 -46 2568 79 20 14 chr1 25630483 25630838 -256562826 + L1PA13 LINE L1 5807 6163 0 708 305 71 4 chr1 25631486 25631671 -256561993 + MIR SINE MIR 6 212 -50 2067 133 0 13 chr1 25631671 25631980 -256561684 + AluSx SINE Alu 1 305 -7 708 305 71 4 chr1 25631980 25632033 -256561631 + MIR SINE MIR 212 260 -2 2158 109 7 7 chr1 25632042 25632345 -256561319 - AluSx SINE Alu -9 303 1 183 80 0 0 chr1 25632396 25632421 -256561243 + (CCAA)n Simple_repeat Simple_repeat 3 27 0 250 283 14 101 chr1 25632597 25632735 -256560929 - L2 LINE L2 -5 3267 3142 207 285 190 19 chr1 25634621 25634724 -256558940 - MIR SINE MIR -107 101 5 431 282 48 77 chr1 25635441 25635650 -256558014 - MIR SINE MIR -57 205 3 1737 139 17 43 chr1 25637715 25638016 -256555648 + AluJo SINE Alu 1 293 -19 713 183 104 37 chr1 25642445 25642609 -256551055 - MER69A DNA AcHobo -2 175 1 303 241 232 0 chr1 25642655 25642767 -256550897 + HsTC2 DNA Tc2 1 138 -1760 1665 205 135 9 chr1 25642768 25643300 -256550364 + HsTC2 DNA Tc2 1265 1863 -35 2508 49 0 13 chr1 25643300 25643605 -256550059 + AluY SINE Alu 1 301 -10 1153 129 0 6 chr1 25643617 25643787 -256549877 + AluSg/x SINE Alu 132 300 -10 584 265 34 0 chr1 25643917 25644064 -256549600 - MIR SINE MIR -79 183 32 259 220 0 0 chr1 25644323 25644373 -256549291 + MIR SINE MIR 4 53 -209 385 303 0 0 chr1 25644374 25644473 -256549191 + MIR SINE MIR 163 261 -1 * 404 363 38 14 chr1 25644398 25644610 -256549054 - MIR SINE MIR 0 262 46 474 354 101 13 chr1 25645227 25645464 -256548200 - MIR SINE MIR 0 262 5 716 225 51 34 chr1 25646955 25647191 -256546473 - MIR SINE MIR 0 262 23 187 301 53 35 chr1 25647802 25647915 -256545749 + L2 LINE L2 3156 3270 -2 674 305 16 28 chr1 25648096 25648345 -256545319 - MIR SINE MIR 0 262 17 180 0 0 0 chr1 25648350 25648370 -256545294 + (CTGTG)n Simple_repeat Simple_repeat 3 22 0 1436 267 73 103 chr1 25650033 25650236 -256543428 + L2 LINE L2 2122 2330 -983 247 120 60 0 chr1 25650236 25650286 -256543378 + MLT1D LTR MaLR 453 505 0 1436 267 73 103 chr1 25650286 25650736 -256542928 + L2 LINE L2 2330 2792 -521 2478 170 100 0 chr1 25650736 25651195 -256542469 + MLT1D LTR MaLR 1 505 0 1436 267 73 103 chr1 25651195 25651695 -256541969 + L2 LINE L2 2792 3304 -9 1045 304 136 10 chr1 25651666 25652310 -256541354 - L2 LINE L2 0 3313 2592 * 243 122 0 20 chr1 25652655 25652704 -256540960 + MADE1 DNA Mariner 33 80 0 2010 98 0 4 chr1 25652824 25653089 -256540575 - AluY SINE Alu -4 307 44 1347 123 36 5 chr1 25653106 25653325 -256540339 - L1MA1 LINE L1 -2 6300 6075 189 352 39 16 chr1 25654111 25654239 -256539425 - MIR SINE MIR -15 247 117 304 348 34 26 chr1 25656701 25656852 -256536812 + MIR SINE MIR 37 192 -65 2243 116 0 7 chr1 25656902 25657212 -256536452 + AluSx SINE Alu 1 308 -4 216 313 0 15 chr1 25658357 25658424 -256535240 + CT-rich Low_complexity Low_complexity 1 66 0 266 226 0 108 chr1 25659075 25659168 -256534496 + L1ME LINE L1 5599 5681 -440 731 272 63 8 chr1 25659214 25659453 -256534211 - MIR SINE MIR -6 256 5 510 284 16 0 chr1 25661713 25661840 -256531824 + MIR SINE MIR 23 151 -111 571 261 86 21 chr1 25661963 25662197 -256531467 + MIR SINE MIR 10 258 -4 195 42 0 0 chr1 25662919 25662943 -256530721 + (TG)n Simple_repeat Simple_repeat 1 24 0 908 247 53 18 chr1 25663238 25663521 -256530143 + L1ME4a LINE L1 5534 5826 -295 597 154 0 0 chr1 25663794 25663904 -256529760 + (TCCA)n Simple_repeat Simple_repeat 4 113 0 398 304 159 14 chr1 25665288 25665508 -256528156 + L2 LINE L2 3018 3269 -3 1670 215 91 48 chr1 25667104 25667622 -256526042 + MLT1F1 LTR MaLR 4 567 0 336 216 141 7 chr1 25668685 25668819 -256524845 - MIR SINE MIR -79 183 33 241 119 0 24 chr1 25668945 25668987 -256524677 + L2 LINE L2 3268 3308 -5 829 173 8 53 chr1 25669456 25669711 -256523953 + MLT2B3 LTR ERVL 225 370 -83 532 250 79 38 chr1 25669733 25669973 -256523691 + MLT1K LTR MaLR 293 542 -46 313 274 24 0 chr1 25670603 25670687 -256522977 - MIR SINE MIR -122 140 55 2242 97 0 14 chr1 25670735 25671058 -256522606 + AluSx SINE Alu 1 319 0 221 340 60 0 chr1 25671748 25671848 -256521816 + L2 LINE L2 3162 3267 -5 413 327 26 13 chr1 25671974 25672130 -256521534 + MER5A DNA MER1_type 4 161 -28 480 245 82 0 chr1 25672460 25672619 -256521045 - MIR SINE MIR -16 246 75 1082 188 49 163 chr1 25672619 25673075 -256520589 + L1ME1 LINE L1 5754 6160 -6 183 42 0 0 chr1 25673095 25673119 -256520545 + (GA)n Simple_repeat Simple_repeat 1 24 0 539 310 78 12 chr1 25674309 25674554 -256519110 + MIR SINE MIR 2 262 0 2305 85 0 4 chr1 25675356 25675637 -256518027 + AluSg SINE Alu 1 280 -30 213 39 0 0 chr1 25675642 25675668 -256517996 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 355 346 28 11 chr1 25676823 25677005 -256516659 - MIR SINE MIR 0 262 78 2504 257 110 35 chr1 25677108 25678370 -256515294 + L2 LINE L2 1938 3313 0 289 359 125 33 chr1 25678616 25679103 -256514561 - L2 LINE L2 -436 2878 2347 7184 156 62 25 chr1 25679300 25679516 -256514148 + L1MC1 LINE L1 3 209 -6217 2073 120 3 0 chr1 25679516 25679837 -256513827 + AluSx SINE Alu 1 322 0 7184 156 62 25 chr1 25679837 25681027 -256512637 + L1MC1 LINE L1 209 1463 -4963 5936 224 68 15 chr1 25681125 25683453 -256510211 + L1MC1 LINE L1 3645 6156 -457 2532 45 0 26 chr1 25683453 25683761 -256509903 - AluY SINE Alu -11 300 1 5936 224 68 15 chr1 25683761 25684244 -256509420 + L1MC1 LINE L1 6156 6612 -1 35 0 0 0 chr1 25684599 25684634 -256509030 + AT_rich Low_complexity Low_complexity 1 35 0 252 0 0 0 chr1 25684735 25684763 -256508901 + (T)n Simple_repeat Simple_repeat 1 28 0 790 296 78 49 chr1 25685332 25685842 -256507822 + L1ME2 LINE L1 48 572 -5547 1200 23 0 0 chr1 25685901 25686031 -256507633 + AluY SINE Alu 1 130 -181 183 80 0 0 chr1 25686031 25686056 -256507608 + (CAA)n Simple_repeat Simple_repeat 2 26 0 355 265 127 24 chr1 25686092 25686345 -256507319 + L1ME2 LINE L1 4987 5265 -864 2036 114 7 17 chr1 25686345 25686644 -256507020 + AluSx SINE Alu 1 296 -16 519 241 88 58 chr1 25686657 25686918 -256506746 + L1MCa LINE L1 1238 1506 -4910 331 330 49 8 chr1 25686934 25687127 -256506537 + L1MCa LINE L1 1443 1889 -898 793 206 53 18 chr1 25687248 25687418 -256506246 + L1ME2 LINE L1 5404 5579 -568 * 1123 207 48 51 chr1 25687414 25687766 -256505898 + L1ME2 LINE L1 5795 6145 -2 1194 200 15 48 chr1 25687858 25688005 -256505659 - MIR SINE MIR -1 261 126 2517 66 3 0 chr1 25688005 25688309 -256505355 + AluY SINE Alu 1 305 -6 1194 200 15 48 chr1 25688309 25688431 -256505233 - MIR SINE MIR -136 126 1 645 88 0 11 chr1 25688703 25688794 -256504870 + AluJ/FLAM SINE Alu 2 91 -221 2073 89 4 4 chr1 25688873 25689144 -256504520 - AluSc SINE Alu -1 308 38 205 222 37 19 chr1 25689199 25689253 -256504411 + MIR SINE MIR 208 262 0 22 0 0 0 chr1 25689396 25689418 -256504246 + AT_rich Low_complexity Low_complexity 1 22 0 1765 144 32 11 chr1 25690030 25690314 -256503350 + AluJb SINE Alu 1 290 -22 243 246 0 18 chr1 25691785 25691842 -256501822 - MIR3 SINE MIR -51 157 102 437 252 24 3 chr1 25692563 25692689 -256500975 - MIR SINE MIR -33 175 47 377 302 140 9 chr1 25693027 25693249 -256500415 - MIR SINE MIR 0 262 12 452 221 182 7 chr1 25693252 25693406 -256500258 - MER5A DNA MER1_type 0 189 9 2794 163 17 36 chr1 25694029 25694064 -256499600 + LTR53 LTR ERVL 1 35 -484 1895 137 13 30 chr1 25694064 25694364 -256499300 + AluJb SINE Alu 1 295 -17 2794 163 17 36 chr1 25694364 25694857 -256498807 + LTR53 LTR ERVL 35 519 0 721 234 78 19 chr1 25694954 25695159 -256498505 - MIR SINE MIR -34 228 12 387 307 54 38 chr1 25696293 25696470 -256497194 - MIR3 SINE MIR -25 183 3 2001 113 68 0 chr1 25696712 25697004 -256496660 + AluSx SINE Alu 1 312 0 930 216 0 0 chr1 25697065 25697236 -256496428 + FAM SINE Alu 1 171 -4 1668 203 0 10 chr1 25697421 25697727 -256495937 + AluJo SINE Alu 3 305 -7 1799 160 0 70 chr1 25697752 25698083 -256495581 + AluJo SINE Alu 3 310 -2 21 82 0 0 chr1 25698095 25698144 -256495520 + AT_rich Low_complexity Low_complexity 1 49 0 283 244 31 39 chr1 25698290 25698437 -256495227 + MIR SINE MIR 72 253 -9 1887 163 17 0 chr1 25698437 25698737 -256494927 - AluJo SINE Alu -7 305 1 2221 120 0 0 chr1 25698774 25699073 -256494591 + AluSx SINE Alu 1 299 -13 446 191 129 52 chr1 25699369 25699579 -256494085 + L1ME4a LINE L1 5604 5829 -292 524 221 8 8 chr1 25700049 25700171 -256493493 - MIR SINE MIR -107 155 34 546 185 117 31 chr1 25700674 25700836 -256492828 - MIR SINE MIR -24 238 63 207 376 55 0 chr1 25700979 25701144 -256492520 + MIR3 SINE MIR 35 208 0 245 267 75 64 chr1 25701484 25701670 -256491994 + MIR SINE MIR 23 217 -45 2112 128 7 10 chr1 25701696 25702002 -256491662 - AluSx SINE Alu -7 305 1 1039 106 0 0 chr1 25702002 25702134 -256491530 - AluSq/x SINE Alu -178 135 4 555 271 12 6 chr1 25702260 25702430 -256491234 - MIR SINE MIR -79 183 13 2355 94 0 13 chr1 25702721 25703028 -256490636 - AluSx SINE Alu -8 304 2 364 165 0 0 chr1 25702974 25703041 -256490623 - Alu SINE Alu -247 55 2 316 248 10 10 chr1 25703399 25703500 -256490164 - MIR SINE MIR -56 152 52 778 286 24 5 chr1 25703993 25704206 -256489458 - MIR SINE MIR -12 250 34 902 193 71 14 chr1 25704388 25704600 -256489064 - MER58A DNA MER1_type 0 224 1 445 296 63 0 chr1 25704643 25704785 -256488879 - MIR SINE MIR -79 183 33 240 143 0 0 chr1 25705119 25705161 -256488503 + (TC)n Simple_repeat Simple_repeat 1 42 0 360 0 0 0 chr1 25705169 25705209 -256488455 + (CA)n Simple_repeat Simple_repeat 2 41 0 1721 166 53 0 chr1 25705758 25705875 -256487789 + AluJb SINE Alu 1 110 -202 192 40 0 0 chr1 25705875 25705900 -256487764 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 1721 166 53 0 chr1 25705900 25706065 -256487599 + AluJb SINE Alu 110 298 -14 1161 95 0 0 chr1 25706139 25706308 -256487356 + (TCCA)n Simple_repeat Simple_repeat 4 172 0 206 157 0 20 chr1 25706327 25706378 -256487286 + (TCCA)n Simple_repeat Simple_repeat 1 50 0 1973 180 56 0 chr1 25706717 25707095 -256486569 + L1MB7 LINE L1 5759 6157 -27 413 250 31 16 chr1 25707712 25707840 -256485824 + LTR67 LTR ERVL 428 557 0 695 218 0 30 chr1 25707841 25708006 -256485658 - MIR SINE MIR -91 171 12 356 297 142 14 chr1 25708071 25708219 -256485445 - MIR SINE MIR -77 185 19 224 304 35 29 chr1 25708922 25709093 -256484571 + (CCCCAG)n Simple_repeat Simple_repeat 6 177 0 228 338 14 0 chr1 25709235 25709306 -256484358 - L2 LINE L2 -8 3305 3234 215 306 38 75 chr1 25709418 25709578 -256484086 + MIR3 SINE MIR 41 194 -14 197 314 100 0 chr1 25710386 25710456 -256483208 - MIR SINE MIR -65 197 121 2365 100 10 10 chr1 25710955 25711266 -256482398 - AluSq SINE Alu -2 311 1 1627 111 13 85 chr1 25711609 25711916 -256481748 + L1MA7 LINE L1 5481 5765 -535 318 26 0 0 chr1 25712024 25712063 -256481601 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 2723 165 21 2 chr1 25712064 25712586 -256481078 + L1MA7 LINE L1 5754 6285 -6 698 212 148 18 chr1 25712668 25712885 -256480779 - MIR SINE MIR -13 249 5 222 378 126 0 chr1 25712960 25713095 -256480569 - MIR SINE MIR -1 261 110 776 320 55 42 chr1 25713166 25713600 -256480064 + L2 LINE L2 2833 3272 0 698 256 90 5 chr1 25713630 25713841 -256479823 - MIR SINE MIR -13 249 21 1683 160 7 55 chr1 25713994 25714301 -256479363 + AluJo SINE Alu 1 292 -20 208 327 7 80 chr1 25715137 25715179 -256478485 + MIR SINE MIR 124 168 -94 1986 129 38 0 chr1 25715179 25715466 -256478198 + AluJb SINE Alu 1 298 -14 208 327 7 80 chr1 25715466 25715573 -256478091 + MIR SINE MIR 168 262 0 279 79 0 0 chr1 25715703 25715741 -256477923 + (CAT)n Simple_repeat Simple_repeat 3 40 0 807 259 119 124 chr1 25716353 25717366 -256476298 + L2 LINE L2 1898 2905 -409 487 214 87 8 chr1 25717592 25717718 -256475946 + L2 LINE L2 3137 3272 0 1030 190 0 0 chr1 25717892 25718076 -256475588 + MIR SINE MIR 79 262 0 385 273 15 53 chr1 25718242 25718374 -256475290 - L3 LINE CR1 -610 967 841 192 254 70 14 chr1 25718729 25718800 -256474864 + L2 LINE L2 2692 2766 -548 * 210 273 0 0 chr1 25718788 25718843 -256474821 - L2 LINE L2 -1 3312 3258 2107 131 10 0 chr1 25718916 25719206 -256474458 - AluJb SINE Alu -19 293 1 235 265 88 0 chr1 25719335 25719403 -256474261 + L2 LINE L2 3214 3287 -26 430 271 131 25 chr1 25719403 25719647 -256474017 - L1ME4a LINE L1 -22 6099 5830 885 160 123 0 chr1 25719662 25719849 -256473815 + MER20 DNA MER1_type 4 213 -6 1487 256 73 25 chr1 25720499 25721309 -256472355 - L2 LINE L2 0 3313 2457 221 236 0 0 chr1 25721479 25721534 -256472130 + MER5A DNA MER1_type 9 63 -126 972 175 0 0 chr1 25721583 25721737 -256471927 + FRAM SINE Alu 1 154 -22 200 152 43 0 chr1 25721737 25721783 -256471881 + (CA)n Simple_repeat Simple_repeat 1 48 0 481 302 113 15 chr1 25722101 25722338 -256471326 + MIR SINE MIR 3 257 -5 1016 168 0 18 chr1 25722339 25722506 -256471158 + FRAM SINE Alu 1 163 -13 249 135 0 0 chr1 25722559 25722595 -256471069 - MLT1L LTR MaLR -10 605 570 1694 201 73 32 chr1 25722595 25723033 -256470631 - MLT1D LTR MaLR 0 505 50 277 108 0 0 chr1 25723033 25723070 -256470594 + (TCCCC)n Simple_repeat Simple_repeat 3 39 0 715 127 38 13 chr1 25723070 25723228 -256470436 + CT-rich Low_complexity Low_complexity 4 165 0 2017 138 14 7 chr1 25723251 25723541 -256470123 - AluSp SINE Alu -21 292 1 274 219 16 16 chr1 25723543 25723607 -256470057 - MLT1D LTR MaLR -441 64 1 647 150 50 94 chr1 25724428 25724451 -256469213 - AluJo/FRAM SINE Alu -10 292 270 2116 67 0 34 chr1 25724451 25724718 -256468946 + AluSg SINE Alu 35 292 -18 647 150 50 94 chr1 25724718 25724854 -256468810 - AluJo/FRAM SINE Alu -32 270 140 808 231 77 28 chr1 25724903 25725116 -256468548 - MIR SINE MIR -2 260 32 2165 62 51 0 chr1 25725116 25725392 -256468272 - AluY SINE Alu -21 290 1 808 231 77 28 chr1 25725392 25725425 -256468239 - MIR SINE MIR -230 32 2 284 312 72 22 chr1 25726228 25726366 -256467298 + MIR3 SINE MIR 30 174 -34 313 371 34 0 chr1 25726921 25727099 -256466565 + MIR SINE MIR 9 192 -70 2485 63 0 13 chr1 25727324 25727625 -256466039 + AluY SINE Alu 1 297 -14 207 283 80 62 chr1 25727625 25727738 -256465926 - MER5A DNA MER1_type -29 160 46 344 211 14 0 chr1 25728633 25728704 -256464960 + L2 LINE L2 3241 3312 -1 878 259 71 0 chr1 25728727 25728966 -256464698 + MIR SINE MIR 2 257 -5 212 248 171 9 chr1 25729029 25729134 -256464530 + L2 LINE L2 3150 3271 -1 313 298 96 83 chr1 25729698 25730000 -256463664 - L2 LINE L2 0 3272 2967 1420 213 81 64 chr1 25730129 25730551 -256463113 - L1ME1 LINE L1 0 6164 5736 599 283 7 0 chr1 25731584 25731736 -256461928 + MIR SINE MIR 25 177 -85 418 159 9 115 chr1 25731976 25732089 -256461575 + MER5B DNA MER1_type 72 172 -6 224 231 327 0 chr1 25732101 25732224 -256461440 - MER5A DNA MER1_type -15 174 4 251 248 96 45 chr1 25732238 25732395 -256461269 - L2 LINE L2 -778 2536 2372 803 296 14 0 chr1 25732513 25732729 -256460935 - MIR SINE MIR -14 248 30 1114 251 68 38 chr1 25732899 25733269 -256460395 - MLT1K LTR MaLR -16 572 192 203 246 0 82 chr1 25733326 25733387 -256460277 + L2 LINE L2 2913 2968 -346 2727 213 101 24 chr1 25734315 25734983 -256458681 - L1ME1 LINE L1 -5 6161 5376 1597 166 22 42 chr1 25734983 25735338 -256458326 + MER7A DNA MER2_type 1 346 0 2727 213 101 24 chr1 25735338 25735787 -256457877 - L1ME1 LINE L1 -790 5376 4963 329 224 49 56 chr1 25735791 25735903 -256457761 - L1ME1 LINE L1 -2075 4071 3959 2470 89 0 0 chr1 25735903 25736205 -256457459 - AluSq SINE Alu -11 302 1 329 224 49 56 chr1 25736205 25736235 -256457429 - L1ME1 LINE L1 -2187 3959 3930 791 133 0 37 chr1 25736266 25736401 -256457263 - FLAM_C SINE Alu -2 131 2 693 249 47 14 chr1 25737165 25737418 -256456246 - MIR SINE MIR -2 260 1 182 206 0 0 chr1 25738545 25738579 -256455085 - MIR SINE MIR -9 253 220 383 253 0 0 chr1 25739040 25739123 -256454541 + MIR SINE MIR 61 143 -65 311 322 41 12 chr1 25739142 25739313 -256454351 + MER5A DNA MER1_type 6 181 -8 554 250 22 7 chr1 25739501 25739637 -256454027 - MIR SINE MIR -37 225 88 195 146 0 0 chr1 25739805 25739846 -256453818 + (CTCA)n Simple_repeat Simple_repeat 3 43 0 209 227 0 0 chr1 25739859 25739903 -256453761 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 1917 253 52 21 chr1 25739941 25740455 -256453209 - MLT1K LTR MaLR 0 588 59 2431 145 29 2 chr1 25740455 25740870 -256452794 - MSTB LTR MaLR 0 426 1 291 280 29 65 chr1 25741240 25741381 -256452283 - MIR SINE MIR -63 145 15 509 215 56 98 chr1 25741846 25742060 -256451604 - MER102b DNA MER1_type -2 339 135 2207 118 3 16 chr1 25742097 25742411 -256451253 + AluSq SINE Alu 1 310 -3 1823 171 0 0 chr1 25742419 25742699 -256450965 + AluJb SINE Alu 1 280 -32 251 0 59 0 chr1 25742699 25742733 -256450931 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 212 271 0 0 chr1 25742801 25742860 -256450804 - MIR SINE MIR -62 146 88 241 323 8 39 chr1 25742974 25743101 -256450563 - MIR SINE MIR -70 192 70 623 216 94 22 chr1 25743336 25743517 -256450147 - MIR SINE MIR -48 214 21 284 315 111 6 chr1 25743664 25743826 -256449838 - MIR3 SINE MIR -15 193 15 1264 239 110 87 chr1 25743936 25744455 -256449209 - MLT1H1 LTR MaLR -11 531 1 474 88 0 0 chr1 25744518 25744586 -256449078 + (CATTC)n Simple_repeat Simple_repeat 3 70 0 1499 179 24 12 chr1 25744616 25744867 -256448797 - AluSx SINE Alu -53 259 6 951 141 0 7 chr1 25744870 25745005 -256448659 - AluSq/x SINE Alu -178 134 1 1104 142 16 0 chr1 25745005 25745188 -256448476 - MER5A DNA MER1_type -3 186 1 284 293 131 0 chr1 25745191 25745290 -256448374 + L2 LINE L2 3197 3308 -5 870 186 6 6 chr1 25745822 25745983 -256447681 - FRAM SINE Alu -5 161 1 2102 142 0 19 chr1 25746002 25746320 -256447344 - AluJo SINE Alu 0 312 1 523 274 39 46 chr1 25746335 25746594 -256447070 - MIR SINE MIR 0 262 6 1201 267 25 47 chr1 25746615 25746898 -256446766 + L2 LINE L2 2877 3148 -165 1307 106 78 18 chr1 25746898 25747115 -256446549 - MER30 DNA MER1_type 0 230 1 1201 267 25 47 chr1 25747115 25747277 -256446387 + L2 LINE L2 3148 3312 -1 657 139 0 0 chr1 25747285 25747393 -256446271 + (GGAA)n Simple_repeat Simple_repeat 1 108 0 424 273 55 0 chr1 25748137 25748265 -256445399 + MIR SINE MIR 11 145 -117 192 200 0 0 chr1 25748316 25748361 -256445303 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 461 157 12 0 chr1 25748390 25748473 -256445191 - FLAM_A SINE Alu -11 131 48 374 127 0 16 chr1 25748478 25748578 -256445086 - Alu SINE Alu 0 302 235 967 244 148 10 chr1 25748735 25749227 -256444437 - L1MC4a LINE L1 -1237 6571 6021 1879 148 0 24 chr1 25749231 25749545 -256444119 - AluJb SINE Alu 0 307 1 586 290 6 6 chr1 25749872 25750048 -256443616 - MIR SINE MIR -21 241 66 526 322 79 33 chr1 25750169 25750678 -256442986 - L1ME4a LINE L1 -12 6109 5578 376 232 131 0 chr1 25750982 25751081 -256442583 + MIR SINE MIR 41 152 -56 450 183 108 17 chr1 25751081 25751201 -256442463 + FLAM_C SINE Alu 1 131 -2 269 322 16 13 chr1 25751308 25751437 -256442227 - MIR SINE MIR -68 140 17 2518 98 19 3 chr1 25752277 25752646 -256441018 - THE1C LTR MaLR 0 375 1 223 331 166 0 chr1 25753158 25753303 -256440361 + MIR SINE MIR 3 171 -91 259 207 24 37 chr1 25753597 25753679 -256439985 - L1MC4a LINE L1 -2009 5799 5719 739 223 64 17 chr1 25754012 25754253 -256439411 + MIR SINE MIR 6 262 0 472 242 71 0 chr1 25755374 25755553 -256438111 - MIR SINE MIR -52 210 17 235 248 52 50 chr1 25755590 25755709 -256437955 + MER5A DNA MER1_type 1 131 -47 207 0 0 0 chr1 25755947 25755970 -256437694 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1420 129 0 24 chr1 25755973 25756182 -256437482 - AluJb SINE Alu -24 288 85 217 324 90 27 chr1 25756704 25756815 -256436849 - MIR3 SINE MIR -89 119 2 488 286 71 109 chr1 25757043 25757385 -256436279 + L2 LINE L2 2383 2737 -576 1115 41 7 0 chr1 25757385 25757530 -256436134 + (TTCC)n Simple_repeat Simple_repeat 4 149 0 488 286 71 109 chr1 25757530 25757564 -256436100 + L2 LINE L2 2737 2771 -542 2112 122 0 3 chr1 25757564 25757860 -256435804 - AluSx SINE Alu -17 295 1 488 286 71 109 chr1 25757860 25758427 -256435237 + L2 LINE L2 2771 3311 -2 2587 149 29 5 chr1 25758457 25758872 -256434792 - MSTB LTR MaLR 0 426 2 708 224 4 96 chr1 25759435 25759685 -256433979 - MLT1K LTR MaLR -13 575 349 594 212 13 40 chr1 25760354 25760388 -256433276 + MER103 DNA DNA 1 34 -132 2032 118 54 48 chr1 25760388 25760760 -256432904 + THE1C LTR MaLR 1 374 -1 594 212 13 40 chr1 25760760 25760876 -256432788 + MER103 DNA DNA 34 147 -19 306 213 160 84 chr1 25760947 25761152 -256432512 + MIR SINE MIR 15 230 -32 1871 97 112 8 chr1 25761627 25761895 -256431769 - AluSg SINE Alu -14 296 1 297 188 78 0 chr1 25762210 25762274 -256431390 + MLT1K LTR MaLR 517 585 -3 1720 185 0 23 chr1 25762314 25762616 -256431048 + AluJo SINE Alu 1 295 -17 380 321 0 0 chr1 25762617 25762723 -256430941 - L2 LINE L2 -3 3310 3205 4335 150 21 32 chr1 25762879 25763694 -256429970 + L1MB7 LINE L1 5279 6084 -100 3476 167 126 68 chr1 25763697 25764698 -256428966 + MER52C LTR ERV1 9 1278 0 312 127 0 0 chr1 25764712 25764767 -256428897 + L1MB7 LINE L1 6112 6166 -18 571 236 114 12 chr1 25764800 25765054 -256428610 + L1ME4a LINE L1 5838 6117 -4 245 170 0 0 chr1 25765116 25765163 -256428501 - L2 LINE L2 -3 3269 3223 963 217 33 8 chr1 25765339 25765579 -256428085 + MIR SINE MIR 2 247 -15 694 221 62 67 chr1 25766419 25766659 -256427005 + MIR SINE MIR 24 262 0 415 315 34 7 chr1 25766923 25767069 -256426595 - MIR3 SINE MIR -1 207 58 945 280 16 0 chr1 25767165 25767422 -256426242 - MIR SINE MIR 0 262 2 182 302 0 0 chr1 25767828 25767871 -256425793 - L2 LINE L2 -89 3183 3141 244 232 113 3 chr1 25768911 25769014 -256424650 + MIR SINE MIR 36 152 -62 229 175 79 16 chr1 25769014 25769077 -256424587 + L1MC5 LINE L1 7859 7925 -36 394 259 27 0 chr1 25769082 25769194 -256424470 + MIR SINE MIR 148 262 0 27 29 0 0 chr1 25769233 25769267 -256424397 + AT_rich Low_complexity Low_complexity 1 34 0 182 247 49 62 chr1 25769439 25769520 -256424144 - L2 LINE L2 0 3272 3193 722 333 36 31 chr1 25769707 25770518 -256423146 + L1MC/D LINE L1 4419 5233 -913 481 244 26 0 chr1 25770548 25770663 -256423001 + L1MC/D LINE L1 5401 5518 -2290 1027 113 0 7 chr1 25770752 25770894 -256422770 + AluJb SINE Alu 1 141 -171 24 0 0 0 chr1 25770911 25770935 -256422729 + AT_rich Low_complexity Low_complexity 1 24 0 452 333 23 11 chr1 25771352 25771529 -256422135 - L2 LINE L2 -558 2756 2578 687 132 110 37 chr1 25772520 25772656 -256421008 - FRAM SINE Alu -30 146 1 225 197 106 0 chr1 25774761 25774827 -256418837 - MIR SINE MIR -70 192 120 398 294 111 28 chr1 25775024 25775313 -256418351 + L2 LINE L2 2989 3301 -12 2204 104 0 10 chr1 25775316 25775632 -256418032 + AluSx SINE Alu 1 313 0 246 276 92 20 chr1 25775694 25775792 -256417872 - L2 LINE L2 -45 3268 3164 586 220 60 36 chr1 25775843 25776011 -256417653 + MIR SINE MIR 78 249 -13 433 269 0 45 chr1 25776094 25776228 -256417436 + L2 LINE L2 3186 3313 0 1014 197 122 56 chr1 25776890 25777210 -256416454 - MER58B DNA MER1_type 0 341 1 1944 83 0 40 chr1 25777900 25778177 -256415487 - AluSq SINE Alu -8 305 40 304 217 0 0 chr1 25779263 25779323 -256414341 + L2 LINE L2 3251 3310 -3 2220 70 0 4 chr1 25779356 25779628 -256414036 + AluSq SINE Alu 33 303 -10 2298 96 6 19 chr1 25780455 25780768 -256412896 + AluSg SINE Alu 1 309 -1 760 286 39 0 chr1 25780796 25781030 -256412634 - MIR SINE MIR 0 262 20 435 246 64 53 chr1 25781057 25781244 -256412420 - HAL1b LINE L1 -1 1347 1159 284 173 0 0 chr1 25781261 25781313 -256412351 - MIR SINE MIR -28 234 183 305 293 153 31 chr1 25781974 25782326 -256411338 + L2 LINE L2 2305 2699 -615 370 203 123 31 chr1 25782329 25782450 -256411214 - L1ME1 LINE L1 0 6334 6047 2117 141 0 0 chr1 25782450 25782748 -256410916 - AluJb SINE Alu -14 298 1 5728 126 34 51 chr1 25782748 25783691 -256409973 - L1MCa LINE L1 -4562 1864 853 2356 106 3 0 chr1 25783691 25783993 -256409671 - AluSg SINE Alu -7 303 1 5728 126 34 51 chr1 25783993 25784270 -256409394 - L1MCa LINE L1 -5573 853 573 275 239 15 15 chr1 25784273 25784340 -256409324 - L1MCa LINE L1 -5811 615 549 240 111 22 44 chr1 25784340 25784385 -256409279 + MER4D LTR ERV1 1 44 -828 355 147 88 0 chr1 25784385 25784453 -256409211 + MER50 LTR ERV1 1 74 -660 258 184 20 20 chr1 25784454 25784503 -256409161 - MER50-int LTR ERV1 -7156 49 1 4664 116 25 26 chr1 25784541 25785140 -256408524 - MER50 LTR ERV1 -12 722 123 1984 118 20 27 chr1 25785140 25785437 -256408227 - AluSx SINE Alu -16 296 2 4664 116 25 26 chr1 25785437 25785560 -256408104 - MER50 LTR ERV1 -611 123 1 5911 99 38 8 chr1 25785560 25786396 -256407268 + MER4D LTR ERV1 41 901 -2 1102 177 25 20 chr1 25786396 25786599 -256407065 - L1MCa LINE L1 -5872 554 351 669 253 12 10 chr1 25786605 25786801 -256406863 + L1MB3 LINE L1 2418 2609 -3537 665 204 153 61 chr1 25786929 25787125 -256406539 + LTR21A LTR ERV1 189 402 -103 748 139 14 21 chr1 25787146 25787290 -256406374 + LTR21A LTR ERV1 344 486 -19 11274 192 32 22 chr1 25787290 25787785 -256405879 + L1MB3 LINE L1 2635 3124 -3059 2246 125 0 16 chr1 25787785 25788098 -256405566 + AluSx SINE Alu 1 308 -4 11274 192 32 22 chr1 25788098 25789077 -256404587 + L1MB3 LINE L1 3124 4092 -2091 642 197 15 8 chr1 25789077 25789209 -256404455 - FLAM_A SINE Alu 0 133 1 11274 192 32 22 chr1 25789209 25790400 -256403264 + L1MB3 LINE L1 4092 5348 -835 2249 101 0 14 chr1 25790400 25790719 -256402945 + AluSg SINE Alu 1 310 0 11274 192 32 22 chr1 25790719 25791422 -256402242 + L1MB3 LINE L1 5348 6043 -140 276 209 0 52 chr1 25791422 25791556 -256402108 + CT-rich Low_complexity Low_complexity 4 130 0 995 257 58 59 chr1 25791661 25792327 -256401337 + L2 LINE L2 2629 3313 0 289 359 125 33 chr1 25792573 25793060 -256400604 - L2 LINE L2 -436 2878 2347 7190 156 62 24 chr1 25793257 25793473 -256400191 + L1MC1 LINE L1 3 209 -6217 2073 120 3 0 chr1 25793473 25793785 -256399879 + AluSx SINE Alu 1 313 0 7190 156 62 24 chr1 25793785 25794974 -256398690 + L1MC1 LINE L1 209 1463 -4963 4858 218 58 8 chr1 25794982 25797401 -256396263 + L1MC1 LINE L1 3528 6148 -465 2492 66 0 10 chr1 25797401 25797704 -256395960 - AluY SINE Alu -11 300 1 1158 61 0 0 chr1 25797706 25797837 -256395827 - AluSg1 SINE Alu -178 131 1 399 173 111 0 chr1 25797865 25797946 -256395718 - L2 LINE L2 -15 3298 3209 1448 157 0 0 chr1 25797946 25798162 -256395502 + AluJb SINE Alu 85 300 -12 865 120 0 23 chr1 25798245 25798378 -256395286 + AluJo/FLAM SINE Alu 4 133 -169 2325 80 3 13 chr1 25798380 25798679 -256394985 + AluSc SINE Alu 3 298 -11 234 219 0 37 chr1 25798707 25798789 -256394875 - L2 LINE L2 -163 3150 3072 1799 53 0 5 chr1 25798908 25799115 -256394549 - AluY SINE Alu -105 206 1 511 169 0 0 chr1 25799154 25799231 -256394433 + MER2 DNA MER2_type 269 345 0 622 236 14 34 chr1 25799258 25799406 -256394258 - MER58B DNA MER1_type 0 341 197 794 212 66 10 chr1 25799636 25799834 -256393830 + MER3 DNA MER1_type 1 209 0 259 282 56 0 chr1 25799834 25799905 -256393759 - LTR41 LTR ERVL -112 661 587 440 207 60 40 chr1 25800081 25800231 -256393433 - LTR41 LTR ERVL -586 187 35 229 143 0 0 chr1 25800232 25800267 -256393397 + MLT1B LTR MaLR 304 338 -52 2204 110 10 0 chr1 25800518 25800810 -256392854 - AluSq SINE Alu -18 295 1 428 128 32 70 chr1 25800848 25801035 -256392629 + (TA)n Simple_repeat Simple_repeat 1 180 0 382 326 100 3 chr1 25801116 25801475 -256392189 + L1ME3 LINE L1 2507 2900 -3246 563 180 41 25 chr1 25801497 25801619 -256392045 + FLAM_C SINE Alu 2 125 -18 385 260 12 17 chr1 25801736 25801909 -256391755 + GA-rich Low_complexity Low_complexity 5 176 0 265 256 23 15 chr1 25801926 25802059 -256391605 + GA-rich Low_complexity Low_complexity 5 138 0 905 166 7 13 chr1 25802138 25802289 -256391375 - AluJo SINE Alu -162 150 1 256 254 247 43 chr1 25802296 25802584 -256391080 + L1ME3 LINE L1 3656 3884 -2262 2406 73 0 13 chr1 25802584 25802886 -256390778 - AluSp SINE Alu -15 298 1 256 254 247 43 chr1 25802886 25802990 -256390674 + L1ME3 LINE L1 3884 4128 -2018 248 206 158 72 chr1 25803082 25803197 -256390467 + L1ME3 LINE L1 4981 5115 -1031 2462 63 3 0 chr1 25803197 25803496 -256390168 - AluY SINE Alu -11 300 1 248 206 158 72 chr1 25803496 25803558 -256390106 + L1ME3 LINE L1 5115 5170 -976 879 224 33 61 chr1 25803652 25803897 -256389767 - MLT1J LTR MaLR -248 263 26 681 310 58 47 chr1 25804022 25804276 -256389388 + L1ME3 LINE L1 5289 5539 -623 733 200 0 29 chr1 25804276 25804446 -256389218 - L1PA16 LINE L1 -4 6162 5998 681 310 58 47 chr1 25804446 25804723 -256388941 + L1ME3 LINE L1 5539 5826 -336 2293 81 0 3 chr1 25804978 25805261 -256388403 + AluSg SINE Alu 1 282 -28 247 62 0 0 chr1 25805261 25805293 -256388371 + (TAAAA)n Simple_repeat Simple_repeat 2 105 0 934 236 138 3 chr1 25805889 25806186 -256387478 + L2 LINE L2 2960 3296 -17 2383 111 0 0 chr1 25806187 25806493 -256387171 - AluSx SINE Alu -6 306 1 297 289 11 11 chr1 25806642 25806732 -256386932 - L2 LINE L2 0 3272 3183 2282 130 0 0 chr1 25807221 25807528 -256386136 - AluSx SINE Alu -5 307 1 249 291 110 1 chr1 25807621 25807754 -256385910 - MIR SINE MIR -30 178 33 193 297 27 14 chr1 25807766 25807840 -256385824 - L2 LINE L2 -831 2483 2409 2283 115 25 6 chr1 25807914 25808271 -256385393 + THE1B LTR MaLR 1 364 0 445 308 26 82 chr1 25809148 25809379 -256384285 + L2 LINE L2 2916 3158 -114 1994 118 0 94 chr1 25809379 25809708 -256383956 - AluSq SINE Alu -15 298 1 2258 112 0 22 chr1 25809709 25810022 -256383642 - AluSx SINE Alu -6 306 1 445 308 26 82 chr1 25810022 25810165 -256383499 + L2 LINE L2 3157 3271 -1 270 333 81 0 chr1 25810356 25810467 -256383197 + MIR3 SINE MIR 38 157 -51 1034 238 18 0 chr1 25810494 25810717 -256382947 - MIR SINE MIR -20 242 16 390 330 34 46 chr1 25810909 25811084 -256382580 + MIR SINE MIR 19 192 -70 935 162 32 16 chr1 25811084 25811269 -256382395 + MER53 DNA DNA 1 188 -1 390 330 34 46 chr1 25811269 25811332 -256382332 + MIR SINE MIR 192 254 -8 2254 96 27 0 chr1 25811414 25811707 -256381957 + AluSc SINE Alu 1 301 -8 250 228 0 0 chr1 25812565 25812622 -256381042 - L1ME LINE L1 -462 5659 5603 2340 97 3 3 chr1 25812642 25812942 -256380722 - AluSx SINE Alu -12 300 1 218 248 30 59 chr1 25813577 25813678 -256379986 + MIR SINE MIR 45 142 -120 903 228 51 32 chr1 25813954 25814267 -256379397 + L1MC4 LINE L1 7735 7995 0 22 80 0 0 chr1 25814294 25814344 -256379320 + AT_rich Low_complexity Low_complexity 1 50 0 2346 93 3 22 chr1 25814448 25814759 -256378905 - AluY SINE Alu -6 305 1 186 43 0 0 chr1 25814760 25814783 -256378881 + (TTCTCC)n Simple_repeat Simple_repeat 3 25 0 586 207 0 8 chr1 25814789 25814910 -256378754 - AluJb SINE Alu 0 312 193 238 148 37 0 chr1 25815100 25815154 -256378510 + GA-rich Low_complexity Low_complexity 2 57 0 194 298 0 0 chr1 25815257 25815304 -256378360 + L3 LINE CR1 1459 1505 -72 204 125 0 0 chr1 25815408 25815440 -256378224 + (CA)n Simple_repeat Simple_repeat 1 32 0 1302 223 55 7 chr1 25815565 25815874 -256377790 + MER46C DNA MER2_type 15 338 0 309 145 0 0 chr1 25815934 25815996 -256377668 + (TG)n Simple_repeat Simple_repeat 2 63 0 2293 266 171 31 chr1 25816471 25817843 -256375821 + L2 LINE L2 1707 3271 -42 190 152 0 61 chr1 25818575 25818641 -256375023 + (TCTCTG)n Simple_repeat Simple_repeat 6 67 0 289 277 11 49 chr1 25818656 25818840 -256374824 + CT-rich Low_complexity Low_complexity 1 177 0 241 148 62 2 chr1 25819316 25819370 -256374294 + MIR SINE MIR 95 146 -62 2044 113 24 3 chr1 25819681 25819972 -256373692 + AluSq SINE Alu 5 301 -12 411 333 118 0 chr1 25820242 25820428 -256373236 - MIR SINE MIR -7 255 48 736 293 0 13 chr1 25820472 25820697 -256372967 + MIR SINE MIR 28 249 -13 362 315 42 7 chr1 25821068 25821211 -256372453 + MIR SINE MIR 46 193 -69 441 240 56 40 chr1 25821215 25821340 -256372324 - L2 LINE L2 -2 3311 3185 230 309 0 0 chr1 25822141 25822196 -256371468 + (CTAGGG)n Simple_repeat Simple_repeat 6 60 0 204 405 0 8 chr1 25822450 25822581 -256371083 - MIR SINE MIR -124 138 9 1376 183 11 68 chr1 25822932 25823211 -256370453 - AluJo SINE Alu -49 263 1 798 173 0 0 chr1 25823738 25823900 -256369764 + (TGGA)n Simple_repeat Simple_repeat 1 162 0 738 214 0 0 chr1 25823969 25824190 -256369474 + (TGGA)n Simple_repeat Simple_repeat 1 221 0 1987 108 4 21 chr1 25824295 25824574 -256369090 + AluSx SINE Alu 27 300 -12 804 166 7 14 chr1 25824608 25824747 -256368917 + FLAM_C SINE Alu 1 138 -5 2205 133 0 0 chr1 25824749 25825058 -256368606 + AluSx SINE Alu 1 309 -3 201 159 0 0 chr1 25825062 25825106 -256368558 + A-rich Low_complexity Low_complexity 1 44 0 822 277 77 62 chr1 25825149 25825684 -256367980 - L1ME4a LINE L1 -61 6060 5518 966 177 18 58 chr1 25825717 25825943 -256367721 - MER96B DNA MER1_type? -2 415 199 1983 130 50 13 chr1 25826193 25826494 -256367170 + AluJb SINE Alu 1 312 0 249 100 25 0 chr1 25826755 25826795 -256366869 + MER96B DNA MER1_type? 190 230 -187 183 129 0 0 chr1 25826849 25826880 -256366784 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 427 335 29 12 chr1 25826989 25827159 -256366505 + MIR SINE MIR 53 225 -37 188 180 49 66 chr1 25827204 25827265 -256366399 - L2 LINE L2 -3 3269 3210 545 163 7 26 chr1 25829337 25829490 -256364174 + (TCCA)n Simple_repeat Simple_repeat 1 150 0 716 155 6 23 chr1 25829508 25829682 -256363982 + (TCCA)n Simple_repeat Simple_repeat 1 171 0 751 177 6 6 chr1 25829709 25829884 -256363780 + (TCCA)n Simple_repeat Simple_repeat 1 175 0 315 286 201 0 chr1 25830222 25830380 -256363284 + MIR SINE MIR 11 197 -65 231 36 0 0 chr1 25831314 25831342 -256362322 + (CAGA)n Simple_repeat Simple_repeat 1 28 0 1961 153 10 3 chr1 25831965 25832272 -256361392 - AluSx SINE Alu -3 309 1 348 229 90 0 chr1 25832308 25832430 -256361234 - L1ME4a LINE L1 -42 6079 5947 517 210 14 0 chr1 25832469 25832607 -256361057 + CT-rich Low_complexity Low_complexity 4 143 0 1123 127 13 0 chr1 25833807 25833964 -256359700 - AluSg/x SINE Alu -21 289 131 404 121 0 0 chr1 25833964 25834022 -256359642 - AluS SINE Alu -252 59 2 1616 151 9 78 chr1 25834061 25834380 -256359284 - AluJb SINE Alu -1 311 15 502 319 20 5 chr1 25834388 25834592 -256359072 + L1ME LINE L1 5561 5767 -354 236 36 0 0 chr1 25834592 25834620 -256359044 + MER41A LTR ERV1 400 427 -127 2418 100 0 0 chr1 25834620 25834931 -256358733 - AluSx SINE Alu -1 311 1 2343 115 0 10 chr1 25835584 25835898 -256357766 + AluSx SINE Alu 1 311 -1 1213 74 0 0 chr1 25835902 25836050 -256357614 + AluYa5 SINE Alu 136 283 -28 316 313 136 57 chr1 25836057 25836581 -256357083 + L2 LINE L2 1696 2260 -1054 208 344 119 20 chr1 25836581 25836732 -256356932 + L2 LINE L2 2715 2880 -434 1878 158 0 42 chr1 25836938 25837249 -256356415 - AluSx SINE Alu -14 298 1 234 0 0 0 chr1 25837375 25837401 -256356263 + (TTTTTG)n Simple_repeat Simple_repeat 4 29 0 2104 98 0 11 chr1 25837905 25838180 -256355484 + AluSq SINE Alu 40 311 -2 517 317 221 16 chr1 25838255 25838567 -256355097 + L3 LINE CR1 431 806 -771 2147 94 35 11 chr1 25838722 25839009 -256354655 + AluSx SINE Alu 1 294 -18 1974 145 14 0 chr1 25839037 25839326 -256354338 + AluJo SINE Alu 1 293 -19 702 229 22 45 chr1 25839326 25839549 -256354115 + L1MC5 LINE L1 7714 7931 -30 339 164 149 0 chr1 25840133 25840200 -256353464 - MER45A DNA AcHobo -1 177 101 1963 142 0 39 chr1 25840680 25840841 -256352823 - AluJo SINE Alu -15 297 152 2154 120 10 32 chr1 25840841 25841149 -256352515 - AluSx SINE Alu -11 301 1 1963 142 0 39 chr1 25841149 25841296 -256352368 - AluJo SINE Alu -160 152 1 478 254 108 0 chr1 25842421 25842551 -256351113 - L2 LINE L2 -7 3265 3122 205 250 60 36 chr1 25843228 25843312 -256350352 + MIR SINE MIR 127 212 -50 2256 107 0 0 chr1 25843551 25843841 -256349823 - AluSc SINE Alu -19 290 1 198 186 186 49 chr1 25844510 25844612 -256349052 + MIR SINE MIR 113 228 -34 301 170 0 0 chr1 25844629 25844676 -256348988 + L1PA16 LINE L1 6037 6083 -83 2281 98 0 13 chr1 25844984 25845291 -256348373 - AluY SINE Alu -8 303 1 2533 57 7 0 chr1 25845717 25846015 -256347649 - AluSp SINE Alu -13 300 1 873 293 29 0 chr1 25846246 25846488 -256347176 - MIR SINE MIR 0 262 14 737 309 49 8 chr1 25897199 25897445 -256296219 - MIR SINE MIR 0 262 7 254 306 19 28 chr1 25897979 25898087 -256295577 + L2 LINE L2 3207 3313 0 596 259 129 35 chr1 25898494 25898695 -256294969 - MIR SINE MIR -32 230 11 291 247 270 0 chr1 25898762 25898851 -256294813 + MER91A DNA MER1_type 84 196 0 414 241 52 0 chr1 25899083 25899199 -256294465 + MIR3 SINE MIR 81 202 -6 494 281 163 0 chr1 25899853 25900006 -256293658 + MER91A DNA MER1_type 2 179 -17 319 206 15 0 chr1 25900204 25900272 -256293392 - MER117 DNA MER1_type -1 196 128 210 275 58 0 chr1 25900885 25900954 -256292710 - MIR SINE MIR -55 153 81 434 246 42 17 chr1 25901261 25901379 -256292285 + MIR SINE MIR 25 145 -63 383 259 206 8 chr1 25901486 25901617 -256292047 + MIR3 SINE MIR 17 173 -35 328 335 21 7 chr1 25902173 25902316 -256291348 - MIR SINE MIR -57 151 4 356 262 35 41 chr1 25902871 25903016 -256290648 + L2 LINE L2 2946 3089 -183 363 44 0 0 chr1 25903175 25903220 -256290444 + (TGGA)n Simple_repeat Simple_repeat 3 47 0 1104 96 0 0 chr1 25903240 25903449 -256290215 + (TGGA)n Simple_repeat Simple_repeat 1 209 0 500 309 121 42 chr1 25903671 25904075 -256289589 + MLT1K LTR MaLR 151 586 -2 250 347 37 21 chr1 25904079 25904269 -256289395 + L3b LINE CR1 1173 1365 -218 1504 245 125 12 chr1 25904281 25904792 -256288872 - MLT1K LTR MaLR -19 569 1 218 352 109 31 chr1 25904799 25904992 -256288672 + L3b LINE CR1 1372 1579 -4 452 300 75 31 chr1 25906017 25906310 -256287354 + L2 LINE L2 2475 2780 -534 2193 112 3 6 chr1 25906355 25906669 -256286995 - AluSq SINE Alu 0 313 1 4227 161 26 23 chr1 25906678 25907183 -256286481 - L1MB3 LINE L1 -1 6182 5673 1913 150 0 3 chr1 25907183 25907489 -256286175 + AluSx SINE Alu 1 305 -7 4227 161 26 23 chr1 25907489 25907723 -256285941 - L1MB3 LINE L1 -510 5673 5441 1836 179 0 22 chr1 25907728 25908124 -256285540 - AluJb SINE Alu 0 389 1 365 223 75 0 chr1 25908155 25908249 -256285415 - MER20B DNA MER1_type -620 163 63 946 238 21 148 chr1 25908302 25908664 -256285000 + L2 LINE L2 2826 3094 -219 1819 170 23 0 chr1 25908664 25908964 -256284700 + AluJb SINE Alu 6 312 0 946 238 21 148 chr1 25908964 25909160 -256284504 + L2 LINE L2 3094 3313 0 433 281 98 24 chr1 25909174 25909338 -256284326 - MIR3 SINE MIR -17 191 16 247 309 149 48 chr1 25909789 25909957 -256283707 + MIR SINE MIR 33 217 -45 581 293 19 43 chr1 25910116 25910324 -256283340 - MIR SINE MIR 0 262 60 282 259 26 35 chr1 25910450 25910566 -256283098 + L2 LINE L2 3015 3129 -184 414 0 0 0 chr1 25910708 25910754 -256282910 + (CA)n Simple_repeat Simple_repeat 2 47 0 220 250 0 0 chr1 25911084 25911132 -256282532 - L2 LINE L2 -3 3310 3263 487 324 42 24 chr1 25911339 25911552 -256282112 - MIR SINE MIR -17 245 29 242 299 55 47 chr1 25912147 25912274 -256281390 - MIR3 SINE MIR -43 165 38 231 311 14 0 chr1 25912845 25912919 -256280745 + MIR3 SINE MIR 82 156 -52 375 326 39 16 chr1 25913070 25913199 -256280465 + MIR SINE MIR 94 225 -37 222 150 0 0 chr1 25913208 25913248 -256280416 + (CAT)n Simple_repeat Simple_repeat 1 40 0 271 209 267 12 chr1 25913315 25913401 -256280263 + MIR SINE MIR 38 145 -63 474 313 31 19 chr1 25913566 25913726 -256279938 - MIR SINE MIR 0 262 101 560 255 88 56 chr1 25913765 25914016 -256279648 - MIR SINE MIR 0 262 4 24 32 0 0 chr1 25914494 25914525 -256279139 + AT_rich Low_complexity Low_complexity 1 31 0 200 59 29 0 chr1 25915394 25915428 -256278236 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 599 208 11 11 chr1 25915468 25915646 -256278018 + (TGAA)n Simple_repeat Simple_repeat 3 180 0 847 177 4 16 chr1 25915658 25915918 -256277746 + (TGAA)n Simple_repeat Simple_repeat 1 256 0 283 241 58 23 chr1 25916600 25916687 -256276977 - MIR SINE MIR -93 169 80 198 280 47 37 chr1 25916758 25916865 -256276799 + L2 LINE L2 2420 2527 -787 2318 100 0 0 chr1 25917085 25917386 -256276278 - AluSx SINE Alu -11 301 1 187 295 33 0 chr1 25918084 25918145 -256275519 - L2 LINE L2 -7 3306 3244 1968 100 10 48 chr1 25918218 25918529 -256275135 + AluSg SINE Alu 1 299 -11 420 143 0 0 chr1 25920112 25920182 -256273482 + (CA)n Simple_repeat Simple_repeat 2 71 0 783 89 9 0 chr1 25920396 25920508 -256273156 + AluSg/x SINE Alu 195 307 -2 288 278 148 28 chr1 25920686 25920794 -256272870 + MIR SINE MIR 22 142 -66 514 274 19 13 chr1 25920902 25921084 -256272580 - MIR SINE MIR -47 215 37 1240 271 142 12 chr1 25921298 25922011 -256271653 + L2 LINE L2 2503 3313 0 186 43 0 0 chr1 25922144 25922167 -256271497 + (CA)n Simple_repeat Simple_repeat 2 24 0 509 230 6 0 chr1 25922236 25922414 -256271250 + (CA)n Simple_repeat Simple_repeat 2 180 0 355 298 190 30 chr1 25922889 25923258 -256270406 + L2 LINE L2 2844 3271 -1 245 310 0 0 chr1 25923512 25923599 -256270065 + (CCA)n Simple_repeat Simple_repeat 2 88 0 204 390 28 7 chr1 25924100 25924241 -256269423 + MIR SINE MIR 98 241 -21 350 317 85 0 chr1 25925302 25925476 -256268188 + MIR SINE MIR 65 262 0 290 325 104 26 chr1 25925468 25925622 -256268042 - MIR SINE MIR -26 236 71 * 328 319 113 8 chr1 25925806 25925993 -256267671 - MIR SINE MIR -1 261 34 494 282 35 0 chr1 25926607 25926777 -256266887 + (CACG)n Simple_repeat Simple_repeat 4 179 0 273 246 105 9 chr1 25926798 25926912 -256266752 + L2 LINE L2 2864 2988 -284 219 254 119 0 chr1 25926919 25926978 -256266686 + L2 LINE L2 3190 3255 -58 192 241 0 0 chr1 25927188 25927246 -256266418 + (TGAA)n Simple_repeat Simple_repeat 2 59 0 393 117 0 0 chr1 25927333 25927393 -256266271 + (GGGA)n Simple_repeat Simple_repeat 4 63 0 1093 191 0 31 chr1 25927536 25927761 -256265903 + MER58A DNA MER1_type 6 223 -1 327 269 158 39 chr1 25927766 25928000 -256265664 - L3 LINE CR1 -11 1566 1305 401 320 180 15 chr1 25928931 25929137 -256264527 + MIR SINE MIR 3 242 -20 1920 143 3 7 chr1 25929181 25929482 -256264182 - AluJo SINE Alu -12 300 1 207 114 0 0 chr1 25929571 25929606 -256264058 + (CAGCC)n Simple_repeat Simple_repeat 4 38 0 271 310 121 0 chr1 25929995 25930137 -256263527 + MIR3 SINE MIR 21 182 -26 188 65 0 32 chr1 25930327 25930358 -256263306 + (AGGGGG)n Simple_repeat Simple_repeat 5 34 0 312 228 140 18 chr1 25930366 25930480 -256263184 + MIR3 SINE MIR 13 140 -68 186 268 18 0 chr1 25930557 25930613 -256263051 - L2 LINE L2 -30 3283 3227 2214 107 0 0 chr1 25930889 25931189 -256262475 - AluY SINE Alu -11 300 1 473 236 108 0 chr1 25931239 25931387 -256262277 + L2 LINE L2 2535 2698 -616 762 176 16 0 chr1 25931963 25932088 -256261576 + AluSq/x SINE Alu 3 129 -183 561 234 32 7 chr1 25932117 25932271 -256261393 - LTR33 LTR ERVL -86 435 278 320 280 8 15 chr1 25932333 25932465 -256261199 - LTR33 LTR ERVL -375 146 16 244 318 73 18 chr1 25933329 25933439 -256260225 + MIR3 SINE MIR 43 158 -50 375 132 0 0 chr1 25933472 25933540 -256260124 + (TC)n Simple_repeat Simple_repeat 2 69 0 441 0 0 0 chr1 25933540 25933589 -256260075 + (CA)n Simple_repeat Simple_repeat 1 49 0 251 98 20 59 chr1 25934137 25934188 -256259476 + MER69 DNA AcHobo 63 111 -2415 839 202 93 16 chr1 25934189 25934437 -256259227 + MER69 DNA AcHobo 2260 2526 0 731 258 60 17 chr1 25934924 25935157 -256258507 + MIR SINE MIR 4 246 -16 186 282 84 14 chr1 25935449 25935520 -256258144 - MIR SINE MIR -79 183 108 456 229 16 8 chr1 25935665 25935787 -256257877 - MER58B DNA MER1_type -2 339 217 317 276 147 35 chr1 25935883 25936053 -256257611 - MIR3 SINE MIR 0 208 20 751 189 5 63 chr1 25936355 25936545 -256257119 - MER20 DNA MER1_type -40 179 1 201 375 131 9 chr1 25937003 25937232 -256256432 + MIR SINE MIR 2 258 -4 273 319 21 0 chr1 25937286 25937380 -256256284 + MIR SINE MIR 108 203 -59 415 313 30 0 chr1 25937690 25937824 -256255840 - MIR SINE MIR -32 230 93 22 0 0 0 chr1 25937936 25937958 -256255706 + AT_rich Low_complexity Low_complexity 1 22 0 201 39 0 0 chr1 25938092 25938118 -256255546 + (CA)n Simple_repeat Simple_repeat 1 26 0 243 206 0 63 chr1 25938591 25938654 -256255010 - MIR3 SINE MIR -46 162 104 467 231 109 26 chr1 25939313 25939469 -256254195 - MIR3 SINE MIR -13 195 27 328 311 47 19 chr1 25939995 25940101 -256253563 + MIR SINE MIR 80 188 -74 190 337 72 0 chr1 25940087 25940170 -256253494 - L2 LINE L2 -75 3197 3109 * 192 321 0 0 chr1 25940140 25940196 -256253468 - MIR SINE MIR -202 60 5 352 306 19 37 chr1 25940815 25940923 -256252741 - MIR SINE MIR -70 138 33 206 285 153 22 chr1 25941188 25941325 -256252339 - L2 LINE L2 -1 3312 3158 346 299 8 55 chr1 25941326 25941436 -256252228 + L2 LINE L2 3191 3296 -17 189 0 0 0 chr1 25941436 25941457 -256252207 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 346 299 8 55 chr1 25941457 25941473 -256252191 + L2 LINE L2 3296 3311 -2 195 206 127 16 chr1 25942084 25942147 -256251517 - MIR3 SINE MIR -136 72 3 271 307 34 11 chr1 25942259 25942347 -256251317 - MIR SINE MIR -84 124 35 299 324 203 7 chr1 25943235 25943383 -256250281 - MIR SINE MIR -51 211 35 225 259 0 0 chr1 25943556 25943614 -256250050 + (TG)n Simple_repeat Simple_repeat 2 59 0 336 24 0 0 chr1 25944236 25944277 -256249387 + (CCTG)n Simple_repeat Simple_repeat 2 42 0 279 0 0 0 chr1 25944277 25944308 -256249356 + (TTCC)n Simple_repeat Simple_repeat 2 32 0 1641 145 64 14 chr1 25944308 25944591 -256249073 - AluJb SINE Alu -15 297 1 949 220 39 0 chr1 25944651 25944883 -256248781 - L1ME2 LINE L1 -11 6153 5913 238 327 100 9 chr1 25945878 25945988 -256247676 + MIR SINE MIR 46 165 -97 290 96 0 19 chr1 25945990 25946042 -256247622 + (TG)n Simple_repeat Simple_repeat 2 52 0 1728 193 35 80 chr1 25946357 25946729 -256246935 + L1MB8 LINE L1 5690 6037 -141 1569 187 3 7 chr1 25946729 25947034 -256246630 + AluJb SINE Alu 1 304 0 1728 193 35 80 chr1 25947034 25947170 -256246494 + L1MB8 LINE L1 6037 6178 0 1897 133 0 54 chr1 25947183 25947499 -256246165 + AluSx SINE Alu 3 301 -11 2154 107 0 0 chr1 25947504 25947820 -256245844 + AluSx SINE Alu 1 316 0 348 313 149 0 chr1 25947903 25948037 -256245627 - MIR SINE MIR -65 197 44 375 284 37 37 chr1 25948859 25948993 -256244671 + MIR SINE MIR 67 200 -62 196 304 36 0 chr1 25949306 25949362 -256244302 - L2 LINE L2 0 3272 3215 226 298 192 7 chr1 25949434 25949585 -256244079 - L2 LINE L2 -166 3106 2928 1880 149 10 0 chr1 25949986 25950281 -256243383 - AluSp SINE Alu -15 298 1 197 231 19 0 chr1 25950496 25950548 -256243116 - MIR SINE MIR -78 130 78 182 333 54 0 chr1 25950567 25950660 -256243004 + MIR SINE MIR 22 119 -143 316 257 0 0 chr1 25950824 25950894 -256242770 + MIR SINE MIR 77 146 -116 282 306 40 24 chr1 25950901 25951025 -256242639 - MIR SINE MIR -24 238 113 717 254 52 21 chr1 25951766 25951959 -256241705 + MIR SINE MIR 59 257 -5 2036 115 4 0 chr1 25951992 25952301 -256241363 + AluSx SINE Alu 5 314 0 590 256 17 28 chr1 25952301 25952481 -256241183 + MER63B DNA MER1_type 20 197 -239 773 244 51 0 chr1 25952729 25952926 -256240738 + MER63B DNA MER1_type 228 434 0 216 282 103 0 chr1 25953105 25953183 -256240481 - MIR SINE MIR -70 192 107 297 296 44 30 chr1 25953819 25953954 -256239710 + MIR3 SINE MIR 3 139 -69 257 343 62 38 chr1 25954045 25954255 -256239409 - MIR SINE MIR 0 262 48 505 303 10 27 chr1 25955028 25955206 -256238458 - MIR SINE MIR -50 212 38 428 280 59 37 chr1 25955439 25955669 -256237995 + MIR SINE MIR 9 247 -15 1006 177 10 0 chr1 25956233 25956852 -256236812 + (TGGA)n Simple_repeat Simple_repeat 1 625 0 503 226 8 0 chr1 25956876 25957009 -256236655 + (TGGA)n Simple_repeat Simple_repeat 4 137 0 942 263 30 13 chr1 25957154 25957455 -256236209 + LTR16C LTR ERVL 186 491 0 416 227 11 0 chr1 25957460 25957548 -256236116 + MIR SINE MIR 65 153 -109 214 290 70 30 chr1 25957586 25957674 -256235990 - L2 LINE L2 -27 3245 3154 590 338 26 13 chr1 25957674 25957905 -256235759 + MIR SINE MIR 1 234 -28 209 266 138 32 chr1 25958417 25958511 -256235153 + MER5A DNA MER1_type 24 127 -62 197 147 0 0 chr1 25958549 25958583 -256235081 - MIR SINE MIR -65 143 110 561 197 8 8 chr1 25959369 25959486 -256234178 + MIR SINE MIR 48 164 -98 207 219 0 0 chr1 25959604 25959645 -256234019 - L2 LINE L2 -1 3271 3231 * 299 308 23 8 chr1 25959632 25959764 -256233900 + MIR3 SINE MIR 71 206 -2 2073 116 11 0 chr1 25959831 25960107 -256233557 + AluSx SINE Alu 1 279 -33 1143 48 24 12 chr1 25960111 25960277 -256233387 + (GAAA)n Simple_repeat Simple_repeat 2 169 0 278 234 39 0 chr1 25960402 25960479 -256233185 + MIR SINE MIR 75 154 -108 254 344 32 45 chr1 25960598 25960755 -256232909 - L2 LINE L2 0 3313 3159 1344 144 22 121 chr1 25960833 25961059 -256232605 - AluYb8 SINE Alu -1 317 129 207 0 0 0 chr1 25961059 25961082 -256232582 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1344 144 22 121 chr1 25961082 25961168 -256232496 - AluYb8 SINE Alu -189 129 36 252 291 70 38 chr1 25961169 25961327 -256232337 - L2 LINE L2 -256 3016 2854 1071 230 91 19 chr1 25962082 25962464 -256231200 - L1ME3A LINE L1 -1 6161 5731 2525 152 124 21 chr1 25962474 25962988 -256230676 - MLT1F1 LTR MaLR 0 567 1 272 217 87 0 chr1 25963123 25963192 -256230472 + MIR SINE MIR 90 164 -98 239 321 55 18 chr1 25963510 25963619 -256230045 - L2 LINE L2 -27 3245 3133 204 380 56 26 chr1 25963743 25963938 -256229726 - L2 LINE L2 -416 2898 2698 221 304 0 14 chr1 25964045 25964114 -256229550 + MIR SINE MIR 74 141 -121 438 237 111 15 chr1 25964533 25964668 -256228996 - MIR SINE MIR -33 229 82 216 265 0 0 chr1 25964713 25964762 -256228902 + (CA)n Simple_repeat Simple_repeat 1 49 0 452 265 145 5 chr1 25964795 25964979 -256228685 - MIR SINE MIR -16 246 38 414 0 0 0 chr1 25965676 25965722 -256227942 + (TG)n Simple_repeat Simple_repeat 1 46 0 868 231 41 0 chr1 25966182 25966377 -256227287 - MER63A DNA MER1_type -7 203 1 460 252 99 13 chr1 25966830 25966981 -256226683 + MIR SINE MIR 43 206 -56 1487 138 54 62 chr1 25967077 25967314 -256226350 + AluJb SINE Alu 36 272 -40 2470 92 0 0 chr1 25967314 25967618 -256226046 + AluSx SINE Alu 1 304 -8 1487 138 54 62 chr1 25967618 25967656 -256226008 + AluJb SINE Alu 272 309 -3 249 325 112 10 chr1 25967926 25968119 -256225545 - MIR SINE MIR -16 246 30 271 218 27 82 chr1 25968221 25968331 -256225333 - L2 LINE L2 -298 2974 2871 455 317 116 25 chr1 25968353 25968871 -256224793 - L2 LINE L2 -650 2664 2100 565 307 32 0 chr1 25968887 25969076 -256224588 - MIR SINE MIR -21 241 47 2283 116 0 10 chr1 25969978 25970280 -256223384 + AluSq SINE Alu 1 299 -14 588 313 71 18 chr1 25970282 25970506 -256223158 + MIR SINE MIR 27 262 0 1097 237 123 26 chr1 25970580 25971043 -256222621 + MLT1E2 LTR MaLR 57 538 -88 1665 105 0 4 chr1 25971919 25972147 -256221517 - AluSg/x SINE Alu 0 310 84 23 0 0 0 chr1 25972196 25972219 -256221445 + AT_rich Low_complexity Low_complexity 1 23 0 1089 271 104 66 chr1 25972340 25972852 -256220812 - L1MC4a LINE L1 -1845 5963 5417 2071 137 3 13 chr1 25972852 25973165 -256220499 + AluSx SINE Alu 1 310 -2 1089 271 104 66 chr1 25973165 25973335 -256220329 - L1MC4a LINE L1 -2391 5417 5255 303 309 97 33 chr1 25973432 25973976 -256219688 - L1MC4a LINE L1 -2664 3482 2904 293 284 84 44 chr1 25974154 25974429 -256219235 - HAL1b LINE L1 -395 953 668 331 364 66 28 chr1 25975215 25975534 -256218130 - L2 LINE L2 -1 3271 2941 2278 114 0 0 chr1 25975710 25976031 -256217633 + AluSg SINE Alu 1 310 0 1702 144 58 7 chr1 25976052 25976329 -256217335 + AluJo SINE Alu 13 303 -9 307 263 148 38 chr1 25977629 25977838 -256215826 + MIR SINE MIR 31 262 0 352 301 115 19 chr1 25977874 25978030 -256215634 + MIR3 SINE MIR 29 199 -9 835 265 117 31 chr1 25978051 25978497 -256215167 + L2 LINE L2 2807 3290 -23 217 258 134 10 chr1 25979141 25979238 -256214426 + MIR SINE MIR 81 189 -73 218 200 0 20 chr1 25980999 25981049 -256212615 + MIR SINE MIR 77 125 -137 2514 61 3 0 chr1 25981264 25981561 -256212103 + AluY SINE Alu 1 298 -13 197 65 32 0 chr1 25981567 25981598 -256212066 + (TTCA)n Simple_repeat Simple_repeat 4 35 0 279 79 0 0 chr1 25981972 25982010 -256211654 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 183 277 46 15 chr1 25982276 25982341 -256211323 - L2 LINE L2 0 3313 3247 231 358 84 0 chr1 25982902 25982997 -256210667 + MIR SINE MIR 89 191 -71 935 212 26 0 chr1 25983350 25983543 -256210121 - MER58A DNA MER1_type 0 224 27 561 355 28 47 chr1 25983990 25984135 -256209529 + L2 LINE L2 2961 3107 -165 1347 211 147 20 chr1 25984135 25984529 -256209135 + MLT1J2 LTR MaLR 3 446 -4 561 355 28 47 chr1 25984529 25984701 -256208963 + L2 LINE L2 3107 3272 0 334 294 24 24 chr1 25984979 25985105 -256208559 + MIR SINE MIR 25 150 -58 2300 114 0 16 chr1 25985278 25985595 -256208069 - AluSx SINE Alu 0 312 1 327 203 114 0 chr1 25985714 25985793 -256207871 - L3 LINE CR1 -108 1469 1382 237 65 0 0 chr1 25985905 25985936 -256207728 + (TAA)n Simple_repeat Simple_repeat 2 32 0 2318 102 3 22 chr1 25985938 25986251 -256207413 + AluSp SINE Alu 1 307 -6 415 298 209 0 chr1 25986265 25986423 -256207241 - MIR SINE MIR -34 228 38 227 213 0 0 chr1 25986493 25986540 -256207124 + (TAA)n Simple_repeat Simple_repeat 1 47 0 1030 207 55 17 chr1 25986542 25986779 -256206885 - MIR SINE MIR 0 262 17 227 259 123 0 chr1 25986802 25986883 -256206781 - MIR SINE MIR -10 252 162 5420 176 31 45 chr1 25986891 25986926 -256206738 + L1MC2 LINE L1 3926 3960 -2384 429 20 0 0 chr1 25986926 25986976 -256206688 + (CA)n Simple_repeat Simple_repeat 2 51 0 5420 176 31 45 chr1 25986976 25988852 -256204812 + L1MC2 LINE L1 3960 5782 -562 2430 100 3 0 chr1 25988852 25989161 -256204503 + AluSg SINE Alu 1 310 0 5420 176 31 45 chr1 25989161 25989709 -256203955 + L1MC2 LINE L1 5782 6336 -8 333 333 0 9 chr1 25989778 25989892 -256203772 - MIR SINE MIR -96 166 54 285 288 42 34 chr1 25990848 25990966 -256202698 - MIR SINE MIR -70 192 74 1814 159 3 39 chr1 25990975 25991283 -256202381 + AluJo SINE Alu 1 297 -15 180 254 48 16 chr1 25991688 25991751 -256201913 + MIR SINE MIR 19 83 -125 667 257 85 18 chr1 25991762 25992034 -256201630 + L1ME4a LINE L1 5589 5878 -243 2075 109 3 14 chr1 25992035 25992343 -256201321 + AluSx SINE Alu 1 305 0 1708 122 0 0 chr1 25992471 25992701 -256200963 - AluSg/x SINE Alu -7 303 74 2427 253 63 41 chr1 25992836 25992924 -256200740 + L1ME3A LINE L1 4525 4610 -1560 405 0 0 0 chr1 25992924 25992969 -256200695 + (TG)n Simple_repeat Simple_repeat 1 45 0 2427 253 63 41 chr1 25992969 25993150 -256200514 + L1ME3A LINE L1 4610 4786 -1384 1903 167 0 3 chr1 25993150 25993443 -256200221 + AluJb SINE Alu 1 292 -20 2427 253 63 41 chr1 25993443 25993943 -256199721 + L1ME3A LINE L1 4786 5274 -896 2404 86 0 3 chr1 25993943 25994245 -256199419 + AluSx SINE Alu 1 301 -11 2427 253 63 41 chr1 25994245 25994323 -256199341 + L1ME3A LINE L1 5274 5349 -821 2524 66 0 10 chr1 25994323 25994627 -256199037 + AluY SINE Alu 1 301 -10 2427 253 63 41 chr1 25994627 25995164 -256198500 + L1ME3A LINE L1 5349 5950 -220 2251 120 0 0 chr1 25995164 25995463 -256198201 + AluSx SINE Alu 1 299 -13 2427 253 63 41 chr1 25995463 25995596 -256198068 + L1ME3A LINE L1 5950 6079 -91 231 282 245 37 chr1 25995907 25996262 -256197402 + L2 LINE L2 2844 3272 0 1187 228 161 21 chr1 25996462 25996848 -256196816 - MLT1K LTR MaLR -3 585 146 269 353 140 14 chr1 25996908 25997129 -256196535 - MIR SINE MIR 0 262 14 1065 217 43 4 chr1 25997826 25998056 -256195608 + MIR SINE MIR 6 244 -18 181 328 16 0 chr1 25998174 25998238 -256195426 - L2 LINE L2 -2 3270 3206 295 294 11 11 chr1 25999086 25999178 -256194486 - L2 LINE L2 -211 3061 2970 209 169 102 17 chr1 25999559 25999618 -256194046 + L2 LINE L2 3195 3258 -14 2404 108 0 0 chr1 25999665 25999970 -256193694 + AluSx SINE Alu 1 305 -7 261 291 0 38 chr1 26000212 26000291 -256193373 + G-rich Low_complexity Low_complexity 4 79 0 347 302 58 0 chr1 26000352 26000491 -256193173 + MIR SINE MIR 82 228 -34 195 261 0 0 chr1 26000468 26000514 -256193150 + L2 LINE L2 3210 3255 -17 * 224 79 26 0 chr1 26000581 26000619 -256193045 - MIR SINE MIR -112 150 112 1858 136 0 70 chr1 26000755 26000908 -256192756 + AluJb SINE Alu 1 122 -190 2091 123 3 13 chr1 26000908 26001208 -256192456 + AluSx SINE Alu 1 297 -15 1858 136 0 70 chr1 26001208 26001370 -256192294 + AluJb SINE Alu 122 294 -18 369 283 90 36 chr1 26001530 26001696 -256191968 - MER5A DNA MER1_type 0 189 15 362 327 48 18 chr1 26001939 26002107 -256191557 - MIR SINE MIR -88 174 2 190 160 40 0 chr1 26002113 26002163 -256191501 + GA-rich Low_complexity Low_complexity 1 52 0 340 295 134 0 chr1 26002781 26002930 -256190734 + MIR SINE MIR 15 183 -79 275 71 24 0 chr1 26003000 26003042 -256190622 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 200 289 0 26 chr1 26003046 26003122 -256190542 + MIR SINE MIR 49 122 -86 323 267 30 111 chr1 26003335 26003470 -256190194 - L1MC4 LINE L1 -1361 6681 6558 2158 113 25 0 chr1 26003471 26003755 -256189909 - AluSx SINE Alu -21 291 1 1015 182 5 64 chr1 26004055 26004275 -256189389 + AluJo SINE Alu 1 207 -105 479 139 0 0 chr1 26004345 26004417 -256189247 + AluJo SINE Alu 211 282 -30 189 0 0 0 chr1 26004428 26004449 -256189215 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 197 289 0 72 chr1 26004449 26004532 -256189132 - MIR SINE MIR -118 144 68 385 299 126 10 chr1 26004916 26005123 -256188541 + MIR SINE MIR 21 251 -11 625 164 0 0 chr1 26005183 26005287 -256188377 - AluSp/q SINE Alu -18 295 192 231 357 56 25 chr1 26005748 26006034 -256187630 - L2 LINE L2 -420 2894 2600 2121 105 6 62 chr1 26006092 26006415 -256187249 + AluSx SINE Alu 1 305 -7 1419 131 4 49 chr1 26006415 26006660 -256187004 + AluSq SINE Alu 74 307 -6 3462 145 70 39 chr1 26006670 26007001 -256186663 - L1MB3 LINE L1 0 6183 5864 2367 79 0 0 chr1 26007001 26007292 -256186372 - AluY SINE Alu 0 311 21 3462 145 70 39 chr1 26007292 26007678 -256185986 - L1MB3 LINE L1 -319 5864 5444 376 296 146 46 chr1 26007691 26008123 -256185541 - L2 LINE L2 -805 2509 2035 860 254 114 64 chr1 26008149 26008605 -256185059 - MLT1J LTR MaLR -9 502 24 468 325 103 14 chr1 26009359 26009651 -256184013 - L2 LINE L2 -2428 886 569 357 232 70 2 chr1 26009895 26010008 -256183656 - MIR SINE MIR -63 145 28 283 265 128 10 chr1 26009959 26010061 -256183603 + MIR SINE MIR 32 145 -63 * 235 335 46 31 chr1 26010418 26010612 -256183052 + L2 LINE L2 2636 2832 -482 22 0 0 0 chr1 26010795 26010817 -256182847 + AT_rich Low_complexity Low_complexity 1 22 0 304 319 51 6 chr1 26011480 26011637 -256182027 - MIR3 SINE MIR -42 166 3 735 235 24 25 chr1 26011680 26011883 -256181781 - MIR SINE MIR -6 256 46 552 322 57 1 chr1 26011940 26012174 -256181490 - MIR SINE MIR 0 262 15 1190 169 15 5 chr1 26012527 26012780 -256180884 - L1MB3 LINE L1 -199 5984 5762 249 170 57 0 chr1 26013370 26013423 -256180241 + GA-rich Low_complexity Low_complexity 3 58 0 2096 103 0 14 chr1 26014021 26014313 -256179351 - AluSg SINE Alu -21 289 2 503 282 77 10 chr1 26014732 26014927 -256178737 + MIR SINE MIR 43 250 -12 726 272 27 2 chr1 26015562 26015755 -256177909 + MIR SINE MIR 1 196 -58 294 217 61 87 chr1 26015807 26015829 -256177835 + Charlie8 DNA MER1_type 98 119 -222 2142 52 0 31 chr1 26015829 26016115 -256177549 + AluY SINE Alu 35 311 0 294 217 61 87 chr1 26016115 26016207 -256177457 + Charlie8 DNA MER1_type 119 209 -132 894 212 0 0 chr1 26016273 26016443 -256177221 + FRAM SINE Alu 1 169 -7 481 287 35 14 chr1 26016443 26016586 -256177078 + MER5B DNA MER1_type 33 178 0 411 351 84 44 chr1 26016874 26016966 -256176698 + L2 LINE L2 2882 2969 -303 2122 114 0 10 chr1 26016966 26017265 -256176399 - AluSx SINE Alu -16 296 1 411 351 84 44 chr1 26017265 26017539 -256176125 + L2 LINE L2 2969 3263 -9 506 238 34 14 chr1 26017693 26017840 -256175824 - MLT1K LTR MaLR -329 259 110 270 252 37 19 chr1 26018294 26018401 -256175263 - LTR67 LTR ERVL 0 557 449 460 262 91 27 chr1 26019053 26019240 -256174424 - MLT1K LTR MaLR -17 571 373 243 286 229 0 chr1 26019284 26019389 -256174275 - MLT1K LTR MaLR -358 230 102 346 304 113 43 chr1 26019496 26019726 -256173938 - MIR SINE MIR -5 257 12 248 263 0 66 chr1 26019786 26019862 -256173802 - L2 LINE L2 -3 3269 3199 1823 124 27 40 chr1 26019879 26020177 -256173487 - AluJo SINE Alu -18 294 1 201 304 226 9 chr1 26020273 26020388 -256173276 - MIR SINE MIR -47 215 76 377 240 10 34 chr1 26021400 26021496 -256172168 + MIR SINE MIR 58 143 -91 2284 104 0 0 chr1 26021496 26021795 -256171869 + AluSq SINE Alu 1 299 -14 377 240 10 34 chr1 26021795 26021827 -256171837 + MIR SINE MIR 143 174 -60 811 345 36 21 chr1 26021840 26022229 -256171435 + L2 LINE L2 2439 2833 -481 1865 122 35 65 chr1 26022305 26022674 -256170990 + THE1B LTR MaLR 1 358 -6 261 259 0 0 chr1 26022682 26022740 -256170924 + L2 LINE L2 3007 3064 -208 2043 118 0 55 chr1 26022748 26023078 -256170586 - AluSx SINE Alu 0 312 1 341 286 82 41 chr1 26023472 26023643 -256170021 + L2 LINE L2 3094 3271 -1 228 253 55 33 chr1 26024327 26024418 -256169246 + MIR SINE MIR 34 126 -82 223 302 269 11 chr1 26025538 26025720 -256167944 + MIR SINE MIR 22 250 -12 1509 182 176 21 chr1 26025737 26026077 -256167587 + MSTD LTR MaLR 4 396 0 684 251 100 13 chr1 26026330 26026569 -256167095 - MER115 DNA AcHobo -318 375 116 207 255 216 0 chr1 26026962 26027064 -256166600 + MER5A DNA MER1_type 66 189 0 557 298 125 48 chr1 26027089 26027337 -256166327 - L2 LINE L2 -3 3269 3003 796 65 0 9 chr1 26028133 26028267 -256165397 + SVA Other Other 1279 1386 0 221 240 240 21 chr1 26028274 26028370 -256165294 + MIR SINE MIR 29 145 -63 416 347 42 28 chr1 26028795 26029008 -256164656 + MIR SINE MIR 20 235 -27 2200 72 0 10 chr1 26029051 26029383 -256164281 - AluY SINE Alu 0 311 1 2267 93 0 3 chr1 26029385 26029687 -256163977 - AluSg SINE Alu -9 301 1 462 223 151 59 chr1 26029876 26030114 -256163550 - MIR SINE MIR -1 261 2 204 280 20 20 chr1 26030599 26030699 -256162965 - L2 LINE L2 -200 3072 2973 234 150 0 0 chr1 26030820 26030860 -256162804 + (GGGA)n Simple_repeat Simple_repeat 4 43 0 272 291 19 19 chr1 26030938 26031041 -256162623 - MLT1I LTR MaLR -3 406 304 457 222 10 48 chr1 26031130 26031235 -256162429 - MLT1I LTR MaLR -277 132 38 314 293 66 14 chr1 26031534 26031680 -256161984 - MIR3 SINE MIR -22 186 28 404 219 143 8 chr1 26031856 26031975 -256161689 + MIR SINE MIR 20 154 -108 2021 60 0 0 chr1 26032182 26032432 -256161232 - AluSg SINE Alu -2 308 59 205 51 51 0 chr1 26083026 26083065 -256110599 + (CAAA)n Simple_repeat Simple_repeat 4 44 0 404 171 171 38 chr1 26083141 26083246 -256110418 - MIR SINE MIR -63 145 27 273 191 101 4 chr1 26083963 26084044 -256109620 - MIR SINE MIR -69 139 54 269 186 198 23 chr1 26084583 26084669 -256108995 + MIR SINE MIR 32 132 -76 488 271 42 9 chr1 26084837 26085037 -256108627 + MIR SINE MIR 26 229 -33 788 210 45 25 chr1 26085731 26085931 -256107733 - MER20 DNA MER1_type 0 219 16 267 238 32 0 chr1 26086059 26086122 -256107542 - MIR SINE MIR -86 122 58 323 238 10 50 chr1 26086243 26086344 -256107320 + L2 LINE L2 3175 3271 -1 202 333 0 0 chr1 26087597 26087651 -256106013 - MIR SINE MIR -112 96 43 331 300 73 9 chr1 26088901 26089011 -256104653 + MIR SINE MIR 29 145 -117 321 270 212 1 chr1 26089646 26089812 -256103852 - MIR3 SINE MIR -54 154 2 209 339 34 0 chr1 26091085 26091144 -256102520 - L2 LINE L2 -14 3258 3198 413 218 59 15 chr1 26091191 26091322 -256102342 + MIR SINE MIR 15 156 -62 228 351 43 0 chr1 26091841 26091935 -256101729 - MIR3 SINE MIR -41 167 70 242 314 66 29 chr1 26092603 26092740 -256100924 - MIR SINE MIR -8 254 113 216 316 13 13 chr1 26092946 26093022 -256100642 + MER5A DNA MER1_type 110 185 -4 254 285 234 0 chr1 26093039 26093197 -256100467 - L3 LINE CR1 -86 1491 1297 498 216 133 55 chr1 26093216 26093397 -256100267 + MIR SINE MIR 29 223 -39 249 189 57 0 chr1 26093633 26093686 -256099978 - MIR SINE MIR -59 149 94 330 318 15 38 chr1 26095013 26095145 -256098519 - MIR3 SINE MIR -77 131 3 541 148 16 94 chr1 26095238 26095301 -256098363 - MIR SINE MIR -135 127 77 2395 71 0 3 chr1 26095301 26095612 -256098052 + AluY SINE Alu 1 310 -1 541 148 16 94 chr1 26095612 26095676 -256097988 - MIR SINE MIR -185 77 10 237 301 86 43 chr1 26095699 26095862 -256097802 - L2 LINE L2 -167 3105 2936 502 219 6 43 chr1 26096545 26096709 -256096955 - L1MC4 LINE L1 -3 8039 7882 353 352 16 0 chr1 26097411 26097536 -256096128 + MIR SINE MIR 86 212 -50 310 348 52 32 chr1 26097821 26098008 -256095656 + MIR SINE MIR 16 211 -51 338 209 48 38 chr1 26098262 26098367 -256095297 + L2 LINE L2 3202 3307 -6 193 234 21 0 chr1 26098654 26098701 -256094963 + MIR3 SINE MIR 152 199 -9 301 272 184 15 chr1 26099143 26099279 -256094385 - MIR SINE MIR -103 159 1 340 340 106 11 chr1 26099625 26099813 -256093851 + MIR SINE MIR 20 225 -37 203 314 38 31 chr1 26099860 26100019 -256093645 - L2 LINE L2 -228 3044 2885 307 374 63 44 chr1 26100245 26100515 -256093149 + L3b LINE CR1 1113 1387 -196 1011 239 56 16 chr1 26100578 26100829 -256092835 + MIR SINE MIR 2 262 0 292 348 8 17 chr1 26101924 26102042 -256091622 + MIR SINE MIR 36 152 -110 249 274 88 29 chr1 26102240 26102342 -256091322 + MIR SINE MIR 33 140 -68 364 316 281 0 chr1 26102383 26102554 -256091110 + MIR SINE MIR 10 228 -34 468 35 0 0 chr1 26105091 26105149 -256088515 + (CA)n Simple_repeat Simple_repeat 2 59 0 235 280 129 32 chr1 26105313 26105406 -256088258 - MIR SINE MIR -5 257 156 1064 229 0 0 chr1 26107855 26108065 -256085599 + AluJb SINE Alu 94 303 -9 413 299 22 15 chr1 26108093 26108230 -256085434 + MIR SINE MIR 7 144 -118 2036 132 3 7 chr1 26110476 26110771 -256082893 - AluSx SINE Alu -18 294 1 247 198 68 9 chr1 26111175 26111258 -256082406 - MIR SINE MIR -66 142 87 2520 65 0 10 chr1 26113196 26113502 -256080162 - AluY SINE Alu -8 303 1 2206 105 0 7 chr1 26113738 26114034 -256079630 + AluSg SINE Alu 6 299 -11 510 143 0 0 chr1 26114034 26114104 -256079560 + AluJo/FRAM SINE Alu 212 281 -31 290 94 19 38 chr1 26114115 26114168 -256079496 - AluSc SINE Alu -168 131 80 498 234 154 27 chr1 26114451 26114639 -256079025 + MIR SINE MIR 49 260 -2 325 285 99 20 chr1 26116223 26116374 -256077290 - MIR SINE MIR -74 188 26 2409 97 0 0 chr1 26116423 26116731 -256076933 + AluSg SINE Alu 1 308 -2 185 290 166 10 chr1 26117082 26117240 -256076424 + MIR SINE MIR 4 191 -64 23 33 0 0 chr1 26118140 26118170 -256075494 + AT_rich Low_complexity Low_complexity 1 30 0 331 275 128 0 chr1 26118603 26118747 -256074917 - MIR SINE MIR -52 210 50 2053 170 76 46 chr1 26118962 26119461 -256074203 + L1MB8 LINE L1 5660 6173 -5 256 217 133 42 chr1 26119834 26119954 -256073710 + L2 LINE L2 3117 3247 -66 2664 65 23 54 chr1 26119965 26120352 -256073312 + THE1C LTR MaLR 1 375 0 799 248 92 0 chr1 26121315 26121521 -256072143 - MIR SINE MIR -36 226 2 326 280 119 18 chr1 26121724 26121892 -256071772 - MIR SINE MIR -77 185 1 2343 88 0 7 chr1 26122158 26122454 -256071210 + AluSp SINE Alu 1 294 -19 319 252 122 26 chr1 26122969 26123084 -256070580 - MIR SINE MIR -63 145 20 190 182 0 68 chr1 26123703 26123747 -256069917 - L2 LINE L2 -18 3254 3214 * 468 301 66 0 chr1 26123713 26123896 -256069768 - MIR SINE MIR -19 243 49 231 167 0 0 chr1 26124276 26124318 -256069346 + A-rich Low_complexity Low_complexity 1 42 0 453 205 144 107 chr1 26124326 26124541 -256069123 + MIR SINE MIR 22 244 -18 328 258 55 16 chr1 26124892 26125020 -256068644 + MIR SINE MIR 116 248 -14 1889 135 17 0 chr1 26125267 26125555 -256068109 + AluJb SINE Alu 1 293 -19 27 0 0 0 chr1 26125698 26125725 -256067939 + AT_rich Low_complexity Low_complexity 1 27 0 268 243 29 78 chr1 26125865 26125968 -256067696 + MER5A DNA MER1_type 18 115 -74 2028 105 54 0 chr1 26126779 26127055 -256066609 + AluSx SINE Alu 1 291 -21 221 305 50 57 chr1 26127109 26127250 -256066414 + MIR3 SINE MIR 27 166 -42 295 252 57 89 chr1 26127385 26127508 -256066156 + MER91B DNA MER1_type 12 130 -60 271 182 76 15 chr1 26127548 26127614 -256066050 + MER91B DNA MER1_type 119 188 -2 1904 136 0 4 chr1 26128062 26128372 -256065292 + AluSg SINE Alu 1 309 0 2467 72 0 0 chr1 26128752 26129043 -256064621 + AluY SINE Alu 1 291 -20 2831 10 0 0 chr1 26129724 26130026 -256063638 + AluY SINE Alu 1 302 -9 310 280 27 0 chr1 26130932 26131007 -256062657 + MER5B DNA MER1_type 3 79 -99 180 0 0 0 chr1 26132507 26132527 -256061137 + (A)n Simple_repeat Simple_repeat 1 20 0 2084 111 0 0 chr1 26138196 26138458 -256055206 + AluSx SINE Alu 22 283 -29 3019 195 77 54 chr1 26138598 26139066 -256054598 + L1MB5 LINE L1 4353 4808 -1366 2265 128 0 0 chr1 26139066 26139371 -256054293 - AluSx SINE Alu -7 305 1 3019 195 77 54 chr1 26139371 26140517 -256053147 + L1MB5 LINE L1 4808 5999 -175 477 161 0 0 chr1 26140527 26140608 -256053056 + L1M4 LINE L1 4815 4895 -1251 2188 121 0 7 chr1 26140702 26141000 -256052664 - AluSx SINE Alu -16 296 1 2410 89 0 3 chr1 26141141 26141445 -256052219 + AluSp SINE Alu 2 304 -9 2217 121 0 0 chr1 26143143 26143432 -256050232 - AluSg SINE Alu -21 289 1 283 257 49 109 chr1 26144056 26144239 -256049425 + MIR3 SINE MIR 31 202 -6 2333 93 13 13 chr1 26144882 26145194 -256048470 + AluSx SINE Alu 1 312 0 301 202 143 0 chr1 26146606 26146690 -256046974 + HsTC2 DNA Tc2 8 103 -1795 34 24 0 0 chr1 26146795 26146836 -256046828 + AT_rich Low_complexity Low_complexity 1 41 0 1633 148 10 61 chr1 26147151 26147462 -256046202 - AluJb SINE Alu -17 295 1 879 245 30 17 chr1 26147629 26147866 -256045798 - MIR SINE MIR 0 262 23 204 40 0 0 chr1 26147869 26147894 -256045770 + (TG)n Simple_repeat Simple_repeat 2 26 0 1849 117 8 0 chr1 26147895 26148143 -256045521 - AluSx SINE Alu -62 250 1 594 246 89 30 chr1 26148492 26148695 -256044969 + MIR SINE MIR 46 260 -2 461 250 10 0 chr1 26148864 26148960 -256044704 - MER2 DNA MER2_type -247 98 2 2067 166 81 75 chr1 26149089 26149596 -256044068 + LTR54 LTR ERV1 1 510 0 652 168 18 9 chr1 26149607 26149720 -256043944 + AluJb SINE Alu 5 118 -194 2193 110 0 13 chr1 26149946 26150254 -256043410 + AluY SINE Alu 2 305 -6 1769 153 40 0 chr1 26150370 26150644 -256043020 + AluJo SINE Alu 1 285 -27 2418 100 0 7 chr1 26150756 26151066 -256042598 - AluSx SINE Alu -4 308 1 1596 212 137 90 chr1 26151487 26151924 -256041740 + MER21B LTR ERV1 19 499 -364 2557 72 0 0 chr1 26151924 26152229 -256041435 + AluY SINE Alu 1 305 -6 1596 212 137 90 chr1 26152229 26152455 -256041209 + MER21B LTR ERV1 499 713 -150 2625 51 0 3 chr1 26152977 26153288 -256040376 + AluY SINE Alu 1 310 -1 4465 56 27 34 chr1 26153288 26153557 -256040107 - LTR10C LTR ERV1 -5 586 317 2468 93 0 3 chr1 26153557 26153869 -256039795 + AluY SINE Alu 1 311 0 4465 56 27 34 chr1 26153869 26154189 -256039475 - LTR10C LTR ERV1 -274 317 1 1638 190 23 16 chr1 26154233 26154543 -256039121 + AluSx SINE Alu 1 312 0 1581 175 7 38 chr1 26154554 26154845 -256038819 + AluJb SINE Alu 1 282 -30 2365 105 3 0 chr1 26154845 26155150 -256038514 + AluSx SINE Alu 1 306 -6 388 233 41 48 chr1 26155222 26155368 -256038296 - L2 LINE L2 0 3313 3169 724 183 0 28 chr1 26156225 26156367 -256037297 - AluJb SINE Alu -16 296 159 1599 175 31 64 chr1 26156475 26156680 -256036984 + MLT1A1 LTR MaLR 14 203 -162 1611 99 43 96 chr1 26156680 26157003 -256036661 + AluSx SINE Alu 5 310 -2 1599 175 31 64 chr1 26157003 26157157 -256036507 + MLT1A1 LTR MaLR 203 361 -4 406 310 74 28 chr1 26157188 26157297 -256036367 + L2 LINE L2 2827 2930 -383 1896 99 4 0 chr1 26157297 26157539 -256036125 - AluSp SINE Alu -70 243 1 406 310 74 28 chr1 26157539 26157755 -256035909 + L2 LINE L2 2930 3167 -146 936 188 0 0 chr1 26157934 26158088 -256035576 - AluSg/x SINE Alu -18 294 141 1792 114 12 4 chr1 26158281 26158527 -256035137 + AluSx SINE Alu 21 268 -44 331 322 122 22 chr1 26158585 26158765 -256034899 + MIR SINE MIR 49 246 -16 297 216 91 23 chr1 26159170 26159258 -256034406 + MIR SINE MIR 82 175 -87 1873 96 38 45 chr1 26159341 26159632 -256034032 + AluSx SINE Alu 9 297 -15 1836 154 7 17 chr1 26159730 26160028 -256033636 + AluSx SINE Alu 1 295 -17 2105 113 3 3 chr1 26160301 26160593 -256033071 + AluSx SINE Alu 1 292 -20 190 261 65 0 chr1 26160933 26160979 -256032685 - L2 LINE L2 -9 3263 3215 181 0 0 0 chr1 26161555 26161575 -256032089 + (T)n Simple_repeat Simple_repeat 1 180 0 763 129 0 79 chr1 26161575 26161715 -256031949 - FLAM_C SINE Alu 0 133 5 2228 120 10 3 chr1 26162085 26162394 -256031270 + AluSx SINE Alu 1 311 -1 2309 82 0 52 chr1 26162460 26162788 -256030876 + AluSx SINE Alu 1 311 -1 2508 78 0 3 chr1 26162890 26163196 -256030468 - AluSq SINE Alu -8 305 1 2161 112 20 0 chr1 26163965 26164261 -256029403 - AluSx SINE Alu -10 302 1 2365 84 14 0 chr1 26164477 26164774 -256028890 + AluSx SINE Alu 1 301 -11 1312 65 0 0 chr1 26165038 26165192 -256028472 + AluSp SINE Alu 144 297 -16 1648 171 9 35 chr1 26165196 26165512 -256028152 + AluJo SINE Alu 1 308 -4 2241 89 3 54 chr1 26165522 26165835 -256027829 + AluSp SINE Alu 1 297 -16 394 277 226 7 chr1 26166087 26166224 -256027440 - MER5A DNA MER1_type -9 180 14 2266 97 0 16 chr1 26166292 26166600 -256027064 + AluSx SINE Alu 1 303 -9 2233 120 3 0 chr1 26166637 26166936 -256026728 + AluSp SINE Alu 1 300 -13 998 235 45 20 chr1 26167048 26167295 -256026369 - MIR SINE MIR -3 259 7 473 284 39 0 chr1 26168139 26168266 -256025398 - L2 LINE L2 0 3313 3182 1744 168 14 7 chr1 26168538 26168830 -256024834 + AluJb SINE Alu 6 299 -13 2695 51 0 0 chr1 26169068 26169379 -256024285 + AluY SINE Alu 1 311 0 294 29 0 0 chr1 26169398 26169433 -256024231 + (TA)n Simple_repeat Simple_repeat 1 35 0 25 0 0 0 chr1 26169476 26169501 -256024163 + AT_rich Low_complexity Low_complexity 1 25 0 1393 117 0 93 chr1 26169868 26170125 -256023539 + AluJb SINE Alu 64 296 -16 219 308 8 0 chr1 26171296 26171416 -256022248 + C-rich Low_complexity Low_complexity 4 124 0 250 275 101 81 chr1 26171848 26171887 -256021777 - MIR SINE MIR -27 235 198 2056 115 10 13 chr1 26171887 26172192 -256021472 - AluSx SINE Alu -8 304 1 250 275 101 81 chr1 26172192 26172301 -256021363 - MIR SINE MIR -64 198 84 1716 156 32 7 chr1 26172458 26172778 -256020886 - AluJb SINE Alu 0 327 1 2582 47 0 3 chr1 26172979 26173279 -256020385 + AluY SINE Alu 1 299 -12 2377 101 0 10 chr1 26173373 26173681 -256019983 - AluSg SINE Alu -5 305 1 727 254 64 18 chr1 26173708 26173928 -256019736 - MIR SINE MIR 0 262 33 2174 115 0 32 chr1 26173992 26174305 -256019359 + AluSq SINE Alu 1 303 -10 2197 113 10 0 chr1 26174305 26174595 -256019069 + AluSq SINE Alu 1 294 -19 941 76 0 69 chr1 26174632 26174763 -256018901 + FLAM_C SINE Alu 12 133 -10 284 227 140 67 chr1 26174777 26174927 -256018737 - L1ME LINE L1 -248 5873 5713 1468 266 105 21 chr1 26175384 26175900 -256017764 + MLT1K LTR MaLR 27 585 -3 2489 78 3 3 chr1 26176006 26176312 -256017352 - AluSx SINE Alu -5 307 2 1922 134 20 36 chr1 26176525 26176830 -256016834 + AluJb SINE Alu 3 302 -10 2368 86 3 3 chr1 26176834 26177137 -256016527 + AluSc SINE Alu 1 303 -6 251 336 18 18 chr1 26177154 26177267 -256016397 + L2 LINE L2 2674 2786 -528 1886 126 100 0 chr1 26177267 26177537 -256016127 + AluSg SINE Alu 1 297 -13 311 57 0 75 chr1 26177608 26177661 -256016003 - MLT2B1 LTR ERVL 0 520 472 2165 129 3 0 chr1 26177691 26177993 -256015671 + AluSx SINE Alu 1 303 -9 289 155 72 0 chr1 26178016 26178113 -256015551 + (TA)n Simple_repeat Simple_repeat 1 104 0 1561 194 80 65 chr1 26178119 26178592 -256015072 - MLT2B1 LTR ERVL -40 480 1 265 225 61 52 chr1 26179558 26179678 -256013986 + L1ME3 LINE L1 5961 6081 -81 2049 123 22 0 chr1 26179755 26180058 -256013606 + AluSx SINE Alu 1 309 0 2167 111 21 0 chr1 26180068 26180356 -256013308 + AluSx SINE Alu 1 294 -18 1287 124 33 19 chr1 26180361 26180571 -256013093 + AluJo SINE Alu 87 299 -13 757 298 158 23 chr1 26181092 26181535 -256012129 + L2 LINE L2 2807 3309 -4 2460 72 0 3 chr1 26181541 26181846 -256011818 + AluY SINE Alu 1 304 -7 2140 99 0 24 chr1 26181929 26182246 -256011418 + AluSx SINE Alu 5 312 0 662 250 109 16 chr1 26182310 26182502 -256011162 - MIR SINE MIR -5 257 48 556 256 19 13 chr1 26182757 26182913 -256010751 + L1ME3A LINE L1 5994 6150 -20 2368 96 0 16 chr1 26182946 26183249 -256010415 - AluSg SINE Alu -12 298 1 1641 139 0 137 chr1 26183251 26183595 -256010069 - AluJb SINE Alu -15 297 1 1792 184 7 0 chr1 26183595 26183900 -256009764 - AluJo SINE Alu -5 307 1 280 294 44 0 chr1 26184121 26184189 -256009475 - MIR SINE MIR -71 137 67 2449 97 0 0 chr1 26184663 26184972 -256008692 + AluSc SINE Alu 1 309 0 2588 74 0 0 chr1 26184974 26185283 -256008381 + AluY SINE Alu 1 309 -2 196 271 0 0 chr1 26185353 26185401 -256008263 - L2 LINE L2 -73 3240 3193 249 296 40 99 chr1 26185515 26185608 -256008056 - L2 LINE L2 -182 3090 3008 1497 163 81 8 chr1 26185608 26185866 -256007798 + AluJb SINE Alu 33 309 -3 249 296 40 99 chr1 26185866 26185924 -256007740 - L2 LINE L2 -264 3008 2948 2048 148 13 0 chr1 26186910 26187214 -256006450 - AluSx SINE Alu -4 308 1 274 176 11 11 chr1 26187491 26187582 -256006082 + (TA)n Simple_repeat Simple_repeat 1 91 0 1746 149 30 4 chr1 26187582 26187850 -256005814 - AluJo SINE Alu -20 292 18 2343 65 7 7 chr1 26187863 26188153 -256005511 - AluY SINE Alu -21 290 1 2332 99 0 10 chr1 26188381 26188694 -256004970 + AluSg SINE Alu 1 310 0 442 306 139 14 chr1 26188741 26188957 -256004707 + MIR SINE MIR 10 252 -10 2319 109 3 0 chr1 26189011 26189314 -256004350 - AluSp SINE Alu -9 304 1 2378 101 0 0 chr1 26189371 26189669 -256003995 - AluSx SINE Alu -14 298 1 1170 163 31 66 chr1 26189814 26190041 -256003623 + MER20 DNA MER1_type 1 219 0 1908 173 0 7 chr1 26190074 26190375 -256003289 + AluJb SINE Alu 1 299 -13 2275 106 10 0 chr1 26190383 26190675 -256002989 + AluSq SINE Alu 10 304 -9 2414 99 0 0 chr1 26190677 26190981 -256002683 + AluSx SINE Alu 1 304 -8 1776 138 80 4 chr1 26191246 26191522 -256002142 + AluSg SINE Alu 1 297 -13 2310 67 42 3 chr1 26191701 26191985 -256001679 - AluY SINE Alu -16 295 1 30 0 0 0 chr1 26191987 26192017 -256001647 + AT_rich Low_complexity Low_complexity 1 30 0 2423 75 3 0 chr1 26192070 26192364 -256001300 - AluY SINE Alu -16 295 1 21 0 0 0 chr1 26193233 26193254 -256000410 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr1 26193270 26193293 -256000371 + (A)n Simple_repeat Simple_repeat 1 23 0 2019 149 7 0 chr1 26194428 26194723 -255998941 - AluSg SINE Alu -13 297 1 618 129 50 0 chr1 26194887 26194988 -255998676 + FAM SINE Alu 77 182 -3 1122 88 0 0 chr1 26194988 26195124 -255998540 + AluSq/x SINE Alu 1 136 -176 2541 73 0 0 chr1 26195125 26195426 -255998238 + AluSp SINE Alu 1 301 -12 558 111 44 2 chr1 26195426 26195633 -255998031 + AluJb SINE Alu 55 302 -10 2153 74 47 30 chr1 26195986 26196285 -255997379 - AluSc SINE Alu -5 304 1 378 273 130 78 chr1 26196731 26197101 -255996563 + L1ME4a LINE L1 5721 6109 -12 2298 108 7 7 chr1 26197268 26197574 -255996090 - AluSx SINE Alu -5 307 2 2135 110 7 16 chr1 26197746 26198055 -255995609 + AluSx SINE Alu 1 306 -6 352 270 63 24 chr1 26198221 26198347 -255995317 - MIR SINE MIR -48 214 84 247 275 11 62 chr1 26198970 26199083 -255994581 + MIR SINE MIR 73 180 -28 2192 102 0 0 chr1 26199414 26199699 -255993965 + AluSx SINE Alu 1 285 -27 292 227 62 82 chr1 26200130 26200227 -255993437 + MIR3 SINE MIR 106 200 -8 442 304 180 58 chr1 26200378 26200485 -255993179 + L2 LINE L2 2827 2920 -393 2602 74 0 3 chr1 26200485 26200796 -255992868 - AluSq SINE Alu -3 310 1 2127 138 0 0 chr1 26200796 26201085 -255992579 - AluSx SINE Alu -23 289 1 442 304 180 58 chr1 26201085 26201356 -255992308 + L2 LINE L2 2920 3157 -156 2575 70 0 3 chr1 26201356 26201668 -255991996 + AluY SINE Alu 1 311 0 442 304 180 58 chr1 26201668 26201680 -255991984 + L2 LINE L2 3157 3166 -147 2528 81 0 0 chr1 26201680 26201988 -255991676 + AluSq SINE Alu 1 308 -5 442 304 180 58 chr1 26201988 26202028 -255991636 + L2 LINE L2 3166 3313 0 1951 152 3 10 chr1 26202049 26202351 -255991313 + AluJo SINE Alu 1 300 -12 2170 142 3 0 chr1 26202354 26202657 -255991007 + AluSx SINE Alu 3 306 -6 2256 207 29 8 chr1 26202674 26203157 -255990507 - LTR65 LTR ERV1 -6 663 171 1752 90 5 0 chr1 26203157 26203379 -255990285 - AluSq SINE Alu -3 310 88 1208 113 18 0 chr1 26203405 26203573 -255990091 - AluSq SINE Alu -11 302 132 2559 72 3 0 chr1 26203646 26203952 -255989712 - AluSp SINE Alu -6 307 1 2232 139 0 0 chr1 26203957 26204260 -255989404 - AluSx SINE Alu -9 303 1 2377 76 7 0 chr1 26204324 26204612 -255989052 + AluSg SINE Alu 1 290 -20 1889 103 0 27 chr1 26205237 26205500 -255988164 + AluSx SINE Alu 37 292 -20 539 308 67 20 chr1 26205649 26205939 -255987725 + L1ME3 LINE L1 5555 5865 -297 2107 126 36 0 chr1 26205939 26206061 -255987603 + AluSx SINE Alu 1 117 -195 522 83 0 0 chr1 26206061 26206133 -255987531 + (TA)n Simple_repeat Simple_repeat 2 73 0 2107 126 36 0 chr1 26206133 26206311 -255987353 + AluSx SINE Alu 117 312 0 539 308 67 20 chr1 26206311 26206364 -255987300 + L1ME3 LINE L1 5865 5914 -248 591 215 68 6 chr1 26206478 26206641 -255987023 - MLT1I LTR MaLR -2 407 235 1538 188 13 40 chr1 26206727 26207031 -255986633 - AluJb SINE Alu -16 296 1 1806 140 3 62 chr1 26207046 26207367 -255986297 - AluJb SINE Alu -10 302 1 245 254 0 0 chr1 26207367 26207426 -255986238 - MLT1I LTR MaLR -310 99 41 3029 130 35 58 chr1 26207507 26207692 -255985972 + MER49 LTR ERV1 1 189 -734 2150 106 0 26 chr1 26207692 26207994 -255985670 + AluSx SINE Alu 1 294 -18 3029 130 35 58 chr1 26207994 26208142 -255985522 + MER49 LTR ERV1 189 339 -584 1734 143 63 37 chr1 26208142 26208442 -255985222 - AluJb SINE Alu -4 308 1 3029 130 35 58 chr1 26208442 26208716 -255984948 + MER49 LTR ERV1 339 595 -328 1052 179 0 0 chr1 26208727 26208889 -255984775 - FAM SINE Alu -23 162 1 1742 141 6 35 chr1 26208890 26209002 -255984662 + MER49 LTR ERV1 600 714 -209 2313 102 0 3 chr1 26209002 26209296 -255984368 - AluSq SINE Alu -20 293 1 1742 141 6 35 chr1 26209296 26209496 -255984168 + MER49 LTR ERV1 714 903 -20 2274 111 3 0 chr1 26209498 26209796 -255983868 + AluSx SINE Alu 1 299 -13 927 124 0 0 chr1 26209796 26209925 -255983739 + AluSq SINE Alu 137 265 -48 2048 156 3 0 chr1 26210218 26210519 -255983145 - AluJb SINE Alu -10 302 1 583 167 0 0 chr1 26210583 26210667 -255982997 - AluS SINE Alu -227 85 2 230 298 169 8 chr1 26210752 26210876 -255982788 + L2 LINE L2 3123 3266 -6 2278 105 44 22 chr1 26210890 26211253 -255982411 + THE1C LTR MaLR 1 371 -4 183 223 131 85 chr1 26211492 26211519 -255982145 + MIR3 SINE MIR 70 94 -114 447 239 37 18 chr1 26211519 26211628 -255982036 - MER81 DNA DNA 0 114 4 183 223 131 85 chr1 26211628 26211730 -255981934 + MIR3 SINE MIR 94 205 -3 430 156 16 0 chr1 26411800 26411864 -255781800 - AluS SINE Alu -247 66 2 1983 156 3 3 chr1 26411890 26412198 -255781466 + AluSx SINE Alu 1 308 -4 452 321 67 12 chr1 26412353 26412518 -255781146 + MIR SINE MIR 67 240 -22 2572 134 38 17 chr1 26412940 26413359 -255780305 - MSTA LTR MaLR 0 428 1 251 258 65 11 chr1 26413377 26413470 -255780194 + L1ME4a LINE L1 5978 6075 -46 465 199 93 43 chr1 26413687 26413746 -255779918 - Charlie1b DNA MER1_type -2238 523 468 2075 167 0 0 chr1 26413746 26414057 -255779607 + AluJb SINE Alu 1 311 -1 465 199 93 43 chr1 26414057 26414158 -255779506 - Charlie1b DNA MER1_type -2293 468 355 978 186 9 62 chr1 26414173 26414399 -255779265 + MER20 DNA MER1_type 2 215 -4 * 1390 188 35 102 chr1 26414396 26414561 -255779103 - Charlie1b DNA MER1_type -2386 375 200 2045 139 0 13 chr1 26414561 26414871 -255778793 - AluSx SINE Alu 0 312 7 1390 188 35 102 chr1 26414871 26415105 -255778559 - Charlie1b DNA MER1_type -2561 200 3 558 293 82 22 chr1 26415424 26415656 -255778008 - MIR SINE MIR -12 250 5 312 252 78 158 chr1 26415693 26416015 -255777649 - L2 LINE L2 -3 3269 2974 648 204 6 93 chr1 26416663 26416825 -255776839 - MIR SINE MIR -103 159 12 1422 107 0 5 chr1 26417213 26417400 -255776264 - AluSq SINE Alu -15 298 113 535 149 0 0 chr1 26417500 26417587 -255776077 - AluS SINE Alu -226 87 1 1824 132 61 20 chr1 26417874 26418169 -255775495 + AluSc SINE Alu 1 307 -2 28 29 0 0 chr1 26418337 26418372 -255775292 + AT_rich Low_complexity Low_complexity 1 35 0 233 254 0 0 chr1 26418744 26418815 -255774849 - L1MC4 LINE L1 0 8042 7972 2111 128 3 0 chr1 26419068 26419356 -255774308 - AluJo SINE Alu -14 298 10 273 305 28 38 chr1 26419608 26419821 -255773843 - L1MC/D LINE L1 -1923 5885 5675 2809 101 3 3 chr1 26419844 26420219 -255773445 - THE1C LTR MaLR 0 375 1 645 313 34 23 chr1 26420219 26420395 -255773269 - MER91A DNA MER1_type -15 181 4 2446 83 7 0 chr1 26420478 26420778 -255772886 - AluSx SINE Alu -10 302 1 309 194 42 0 chr1 26420935 26421007 -255772657 - L1MA10 LINE L1 0 6334 6260 801 166 33 13 chr1 26421109 26421300 -255772364 + AluJb SINE Alu 159 352 0 183 80 0 0 chr1 26421325 26421350 -255772314 + (GGGAA)n Simple_repeat Simple_repeat 3 27 0 1002 100 24 0 chr1 26421353 26421523 -255772141 + (GAAA)n Simple_repeat Simple_repeat 1 174 0 284 252 194 0 chr1 26421716 26421855 -255771809 - MIR SINE MIR -93 169 4 796 170 44 33 chr1 26421862 26422044 -255771620 + MER20 DNA MER1_type 2 185 -34 537 271 71 51 chr1 26422055 26422310 -255771354 - L2 LINE L2 -25 3288 3029 2303 79 0 0 chr1 26422312 26422590 -255771074 + AluSx SINE Alu 21 298 -14 592 227 46 46 chr1 26423434 26423628 -255770036 - MIR SINE MIR -13 249 56 1254 263 137 37 chr1 26424128 26424425 -255769239 + L2 LINE L2 2216 2482 -831 2248 104 7 0 chr1 26424425 26424722 -255768942 - AluSq SINE Alu -14 299 1 1254 263 137 37 chr1 26424722 26425412 -255768252 + L2 LINE L2 2482 3313 0 431 290 57 45 chr1 26425682 26425858 -255767806 + MIR SINE MIR 14 191 -71 541 333 88 37 chr1 26425919 26426567 -255767097 - L2 LINE L2 -15 3257 2576 438 283 111 38 chr1 26426604 26426919 -255766745 + L1ME4a LINE L1 5562 5899 -222 2298 96 0 0 chr1 26426994 26427298 -255766366 + AluSx SINE Alu 1 304 0 203 191 0 24 chr1 26427632 26427674 -255765990 + MIR SINE MIR 113 153 -55 1684 192 0 31 chr1 26427834 26428009 -255765655 - AluJo SINE Alu -4 308 146 1743 142 43 18 chr1 26428009 26428291 -255765373 - AluSx SINE Alu -23 289 1 1684 192 0 31 chr1 26428291 26428433 -255765231 - AluJo SINE Alu -166 146 1 691 248 7 13 chr1 26428433 26428586 -255765078 - MIR SINE MIR -99 163 12 281 223 146 82 chr1 26428611 26428817 -255764847 + MER112 DNA MER1_type 30 248 -12 396 333 89 14 chr1 26429087 26429300 -255764364 - MIR SINE MIR -5 257 29 276 130 0 0 chr1 26430418 26430464 -255763200 + (CA)n Simple_repeat Simple_repeat 2 47 0 301 261 92 59 chr1 26430587 26430740 -255762924 + MER103 DNA DNA 1 158 -8 2269 107 3 0 chr1 26430746 26431044 -255762620 - AluSp SINE Alu -12 301 3 180 0 0 0 chr1 26431046 26431066 -255762598 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 519 316 45 28 chr1 26431719 26431948 -255761716 + MIR SINE MIR 19 250 -12 2051 139 3 7 chr1 26432011 26432320 -255761344 - AluSx SINE Alu -4 308 1 1856 129 7 42 chr1 26432757 26432902 -255760762 + AluJo SINE Alu 1 131 -181 2363 103 0 3 chr1 26432902 26433203 -255760461 + AluSg SINE Alu 1 300 -10 1856 129 7 42 chr1 26433203 26433366 -255760298 + AluJo SINE Alu 131 298 -14 21 36 0 0 chr1 26433366 26433394 -255760270 + AT_rich Low_complexity Low_complexity 1 28 0 3053 216 80 85 chr1 26433579 26434885 -255758779 - MLT1B-int LTR MaLR -72 1299 1 2007 151 53 21 chr1 26434885 26435263 -255758401 - MLT1B LTR MaLR 0 390 1 525 77 26 0 chr1 26435264 26435342 -255758322 - L1ME LINE L1 -440 5724 5645 1392 143 28 9 chr1 26435345 26435562 -255758102 + AluJo SINE Alu 71 291 -21 309 151 0 0 chr1 26435571 26435624 -255758040 + GA-rich Low_complexity Low_complexity 1 53 0 1515 199 85 2 chr1 26435636 26436057 -255757607 - L1ME LINE L1 -521 5643 5190 2017 157 3 6 chr1 26436571 26436884 -255756780 + AluJb SINE Alu 1 312 0 338 176 167 0 chr1 26437153 26437255 -255756409 - MIR SINE MIR -12 250 132 674 176 115 7 chr1 26437285 26437433 -255756231 - MER20 DNA MER1_type -49 170 7 496 222 19 0 chr1 26437434 26437542 -255756122 - MIR SINE MIR -121 141 32 1890 135 31 7 chr1 26438462 26438750 -255754914 - AluJo SINE Alu -17 295 1 1439 219 50 88 chr1 26439194 26439773 -255753891 - L1MC5 LINE L1 -785 7176 6620 2247 109 0 3 chr1 26439802 26440095 -255753569 - AluSx SINE Alu -20 292 1 1467 271 34 0 chr1 26440112 26440521 -255753143 - MLT1-int LTR MaLR -771 600 178 241 111 44 0 chr1 26440581 26440626 -255753038 + MLT1E2 LTR MaLR 272 318 -308 251 254 17 0 chr1 26440644 26440703 -255752961 + L2 LINE L2 3002 3061 -211 282 87 0 0 chr1 26441209 26441255 -255752409 + (TCCA)n Simple_repeat Simple_repeat 2 47 0 210 127 32 32 chr1 26441429 26441492 -255752172 + CT-rich Low_complexity Low_complexity 1 63 0 1714 150 0 92 chr1 26441583 26441909 -255751755 - AluJo SINE Alu -16 296 1 2095 244 18 8 chr1 26441909 26442412 -255751252 + MLT2B3 LTR ERVL 1 508 -46 2175 94 25 3 chr1 26442421 26442707 -255750957 - AluSg SINE Alu -18 292 1 347 284 91 91 chr1 26442717 26443039 -255750625 - L1MC5 LINE L1 -1879 5929 5605 2407 99 0 6 chr1 26443039 26443352 -255750312 - AluSx SINE Alu 0 312 2 347 284 91 91 chr1 26443352 26443543 -255750121 - L1MC5 LINE L1 -2202 5606 5416 185 245 102 0 chr1 26443906 26443955 -255749709 - L3 LINE CR1 -483 1094 1041 305 227 82 9 chr1 26444021 26444131 -255749533 - L1ME4a LINE L1 -12 6109 5992 1393 196 12 0 chr1 26444234 26444484 -255749180 - AluJo SINE Alu -21 291 39 1761 178 14 3 chr1 26444489 26444782 -255748882 - AluJb SINE Alu -16 296 1 24 0 0 0 chr1 26444782 26444806 -255748858 + AT_rich Low_complexity Low_complexity 1 24 0 229 250 0 0 chr1 26444806 26444854 -255748810 - L1ME4a LINE L1 -543 5578 5531 219 298 43 11 chr1 26445323 26445417 -255748247 + MIR SINE MIR 69 165 -97 306 73 0 0 chr1 26445426 26445467 -255748197 + (TG)n Simple_repeat Simple_repeat 2 42 0 1305 26 0 0 chr1 26445502 26445657 -255748007 + L1PA4 LINE L1 6001 6155 0 1063 227 99 37 chr1 26445684 26445716 -255747948 - L2 LINE L2 -626 2688 2659 2129 117 53 42 chr1 26445716 26446076 -255747588 + THE1B LTR MaLR 1 364 0 1063 227 99 37 chr1 26446076 26446418 -255747246 - L2 LINE L2 -655 2659 2291 1879 151 21 3 chr1 26446439 26446724 -255746940 + AluJb SINE Alu 1 290 -22 330 259 175 6 chr1 26446790 26446956 -255746708 - MER117 DNA MER1_type 0 197 4 2548 75 0 0 chr1 26447002 26447308 -255746356 + AluY SINE Alu 1 306 -5 614 293 80 9 chr1 26447309 26447521 -255746143 + MIR SINE MIR 25 251 -11 17533 126 16 94 chr1 26448675 26452400 -255741264 - L1P LINE L1 -2703 3443 12 654 278 217 34 chr1 26452503 26453001 -255740663 + L2 LINE L2 2446 2851 -462 2064 135 7 0 chr1 26453001 26453304 -255740360 - AluSq SINE Alu -3 310 6 654 278 217 34 chr1 26453304 26453532 -255740132 + L2 LINE L2 2851 3313 0 209 196 33 22 chr1 26453691 26453783 -255739881 + (CATATA)n Simple_repeat Simple_repeat 6 98 0 1122 222 4 47 chr1 26454325 26454582 -255739082 - MIR SINE MIR -15 247 2 410 249 77 72 chr1 26454758 26454939 -255738725 + MIR SINE MIR 7 188 -74 408 223 115 15 chr1 26455045 26455175 -255738489 + MIR SINE MIR 120 262 0 1882 148 30 10 chr1 26455225 26455523 -255738141 + AluJo SINE Alu 1 304 -8 319 194 32 0 chr1 26455574 26455636 -255738028 + MIR SINE MIR 93 156 -106 2327 118 0 6 chr1 26456359 26456673 -255736991 + AluSx SINE Alu 1 312 0 320 226 0 71 chr1 26456774 26456858 -255736806 - MIR SINE MIR -109 153 76 567 271 58 50 chr1 26456933 26456968 -255736696 - MIR SINE MIR -2 260 227 577 51 25 13 chr1 26456968 26457047 -255736617 + MADE1 DNA Mariner 1 80 0 567 271 58 50 chr1 26457047 26457231 -255736433 - MIR SINE MIR -35 227 41 387 218 127 0 chr1 26457386 26457496 -255736168 - L1ME3A LINE L1 -188 5982 5859 2964 197 27 56 chr1 26457768 26458455 -255735209 - L1ME2 LINE L1 -10 6154 5489 1950 147 0 7 chr1 26458455 26458765 -255734899 - AluJb SINE Alu 0 308 1 2964 197 27 56 chr1 26458765 26458842 -255734822 - L1ME2 LINE L1 -675 5489 5411 555 250 150 39 chr1 26459017 26459197 -255734467 + MIR SINE MIR 6 205 -57 371 232 20 20 chr1 26459706 26459805 -255733859 + MIR SINE MIR 28 126 -136 183 286 143 41 chr1 26460599 26460697 -255732967 + L3 LINE CR1 1062 1169 -408 372 265 73 114 chr1 26461021 26461156 -255732508 + L2 LINE L2 2916 3055 -258 1785 177 17 3 chr1 26461156 26461455 -255732209 + AluJb SINE Alu 1 303 -9 372 265 73 114 chr1 26461455 26461715 -255731949 + L2 LINE L2 3055 3295 -18 193 107 0 0 chr1 26462415 26462443 -255731221 - L2 LINE L2 -32 3240 3213 619 276 31 85 chr1 26462455 26462692 -255730972 - L2 LINE L2 -13 3300 3080 1896 135 0 78 chr1 26462692 26463026 -255730638 - AluJb SINE Alu 0 312 5 619 276 31 85 chr1 26463026 26463081 -255730583 - L2 LINE L2 -233 3080 3024 407 331 20 7 chr1 26463080 26463231 -255730433 - MIR SINE MIR -62 200 48 * 449 317 48 29 chr1 26463846 26464054 -255729610 + L1MC4a LINE L1 5709 5920 -1888 1102 178 0 0 chr1 26464061 26464235 -255729429 - AluJb SINE Alu -6 306 133 225 0 0 0 chr1 26464235 26464260 -255729404 + (TG)n Simple_repeat Simple_repeat 2 26 0 954 225 74 22 chr1 26464264 26464535 -255729129 + AluJo SINE Alu 19 303 -9 21 36 0 0 chr1 26464672 26464700 -255728964 + AT_rich Low_complexity Low_complexity 1 28 0 29 28 0 0 chr1 26464829 26464865 -255728799 + AT_rich Low_complexity Low_complexity 1 36 0 1012 152 91 0 chr1 26465013 26465178 -255728486 + AluJb SINE Alu 115 294 -18 186 43 0 0 chr1 26465187 26465210 -255728454 + (TATG)n Simple_repeat Simple_repeat 4 26 0 2719 211 53 31 chr1 26465268 26465605 -255728059 + MER82 DNA MER2_type 1 361 -292 1762 198 0 0 chr1 26465605 26465922 -255727742 - AluJo SINE Alu 0 317 1 2719 211 53 31 chr1 26465922 26466222 -255727442 + MER82 DNA MER2_type 361 653 0 428 284 29 0 chr1 26466327 26466429 -255727235 + MIR SINE MIR 157 261 -1 1543 184 57 18 chr1 26466431 26466713 -255726951 + AluJo SINE Alu 11 303 -9 213 279 96 48 chr1 26467088 26467192 -255726472 + L2 LINE L2 3160 3268 -4 1870 137 24 14 chr1 26467284 26467576 -255726088 + AluSx SINE Alu 1 295 -17 623 309 26 18 chr1 26467770 26468014 -255725650 - MIR SINE MIR 0 262 18 297 323 24 118 chr1 26468171 26468639 -255725025 + L2 LINE L2 2840 3263 -9 338 321 85 48 chr1 26468706 26469036 -255724628 + L2 LINE L2 2884 3225 -47 299 297 104 15 chr1 26469364 26469502 -255724162 + MIR SINE MIR 16 162 -60 2433 99 0 6 chr1 26469607 26469919 -255723745 + AluSg SINE Alu 1 310 0 340 118 0 0 chr1 26469998 26470049 -255723615 + MIR SINE MIR 110 160 -102 832 263 83 0 chr1 26470067 26470295 -255723369 + MIR SINE MIR 5 251 -11 350 250 33 22 chr1 26470302 26470394 -255723270 + MIR SINE MIR 153 245 -17 562 133 286 0 chr1 26471020 26471125 -255722539 - AluSq/x SINE Alu -176 136 2 1222 164 14 0 chr1 26471226 26471438 -255722226 - MER2 DNA MER2_type -1 344 130 15197 116 28 10 chr1 26471438 26472386 -255721278 - Tigger1 DNA MER2_type 0 2418 1489 2116 124 3 0 chr1 26472386 26472685 -255720979 + AluSg SINE Alu 1 300 -10 15197 116 28 10 chr1 26472685 26474088 -255719576 - Tigger1 DNA MER2_type -929 1489 24 642 133 150 0 chr1 26474097 26474210 -255719454 - MER2 DNA MER2_type -215 130 1 31 0 0 0 chr1 26474293 26474324 -255719340 + AT_rich Low_complexity Low_complexity 1 31 0 647 221 14 0 chr1 26474514 26474654 -255719010 - MLT1A2 LTR MaLR -51 323 182 238 105 0 140 chr1 26474658 26474715 -255718949 - MLT1A2 LTR MaLR -167 207 159 220 296 37 37 chr1 26474738 26474819 -255718845 + L2 LINE L2 3191 3271 -1 497 180 63 149 chr1 26474858 26475037 -255718627 - MIR SINE MIR -69 139 1 2392 71 26 16 chr1 26475720 26476028 -255717636 + AluSx SINE Alu 1 311 -1 221 217 385 0 chr1 26476182 26476265 -255717399 - MIR SINE MIR -74 188 74 296 241 19 28 chr1 26476537 26476645 -255717019 + GA-rich Low_complexity Low_complexity 1 107 0 411 92 0 15 chr1 26476700 26476765 -255716899 - MLT2B2 LTR ERVL 0 515 452 461 71 83 0 chr1 26476768 26476852 -255716812 + AluY SINE Alu 1 91 -220 331 111 16 32 chr1 26476952 26477015 -255716649 - L1M4 LINE L1 -406 5778 5717 266 136 141 153 chr1 26477020 26477149 -255716515 + Charlie5 DNA MER1_type 2352 2480 -144 2511 78 3 0 chr1 26477149 26477455 -255716209 - AluSp SINE Alu -6 307 1 266 136 141 153 chr1 26477455 26477502 -255716162 + Charlie5 DNA MER1_type 2480 2526 -98 637 287 25 4 chr1 26477909 26478093 -255715571 + MIR3 SINE MIR 18 201 -7 492 239 148 14 chr1 26478105 26478247 -255715417 + MIR SINE MIR 36 196 -66 341 268 43 11 chr1 26478253 26478419 -255715245 - MIR SINE MIR -8 254 8 259 343 101 1 chr1 26478483 26478637 -255715027 - MIR3 SINE MIR -40 168 28 293 331 15 31 chr1 26478905 26479035 -255714629 - L2 LINE L2 -8 3264 3137 1017 273 21 10 chr1 26479052 26479377 -255714287 + L1ME LINE L1 5461 5772 -349 358 239 39 41 chr1 26479659 26479807 -255713857 - L1M2 LINE L1 -722 5442 5289 287 268 107 45 chr1 26479996 26480108 -255713556 + MIR SINE MIR 14 132 -130 2027 203 73 29 chr1 26480266 26480639 -255713025 + MLT1D LTR MaLR 5 405 -100 1719 208 13 0 chr1 26480639 26480947 -255712717 - AluJo SINE Alu 0 312 1 2027 203 73 29 chr1 26480947 26481051 -255712613 + MLT1D LTR MaLR 405 503 -2 500 330 64 14 chr1 26481136 26481354 -255712310 - MIR SINE MIR -14 248 20 875 294 78 35 chr1 26481779 26482299 -255711365 + L1ME LINE L1 5275 5824 -297 1345 155 34 75 chr1 26482395 26482517 -255711147 - L1MB2 LINE L1 0 6171 6046 2427 71 0 10 chr1 26482517 26482825 -255710839 - AluSg SINE Alu -5 305 1 1345 155 34 75 chr1 26482825 26483024 -255710640 - L1MB2 LINE L1 -125 6046 5863 1909 58 58 0 chr1 26483476 26483718 -255709946 - AluY SINE Alu 0 311 56 335 210 0 0 chr1 26484486 26484556 -255709108 + MIR SINE MIR 41 109 -105 621 283 61 20 chr1 26484632 26484830 -255708834 - MIR SINE MIR -55 207 2 532 274 139 10 chr1 26485490 26485698 -255707966 + MIR SINE MIR 7 241 -21 197 175 25 25 chr1 26485687 26485727 -255707937 + L2 LINE L2 3216 3255 -17 * 210 254 55 0 chr1 26485895 26485950 -255707714 - MIR SINE MIR -168 94 37 211 317 73 0 chr1 26486136 26486218 -255707446 - MIR SINE MIR -169 93 6 424 321 48 31 chr1 26486907 26487368 -255706296 - MLT1L LTR MaLR -3 611 123 233 189 113 0 chr1 26487337 26487390 -255706274 - MLT1L LTR MaLR -414 201 143 * 662 209 30 0 chr1 26487465 26487599 -255706065 + MLT1J2 LTR MaLR 18 155 -295 405 288 9 0 chr1 26487629 26487740 -255705924 - MER58C DNA MER1_type 0 215 104 429 246 23 8 chr1 26487760 26487890 -255705774 - MER58C DNA MER1_type -83 132 1 334 263 59 25 chr1 26487925 26488043 -255705621 + MLT1J2 LTR MaLR 265 386 -64 1906 124 59 12 chr1 26488050 26488389 -255705275 - L1MB3 LINE L1 -1 6182 5828 1861 124 4 11 chr1 26488389 26488663 -255705001 - AluSq SINE Alu 0 313 42 2366 88 0 3 chr1 26488663 26488959 -255704705 - AluSx SINE Alu -17 295 1 1628 195 127 22 chr1 26488987 26489403 -255704261 - LTR64 LTR ERVK -96 462 3 231 277 62 27 chr1 26489404 26489516 -255704148 + MIR SINE MIR 14 129 -133 289 307 45 0 chr1 26490580 26490668 -255702996 + MIR SINE MIR 1 92 -170 351 306 104 35 chr1 26491409 26491553 -255702111 + L2 LINE L2 3119 3272 0 219 260 110 14 chr1 26491958 26492031 -255701633 + MIR SINE MIR 111 190 -72 586 320 46 58 chr1 26492181 26492612 -255701052 + L2 LINE L2 2868 3293 -20 352 304 0 0 chr1 26492718 26492797 -255700867 + MIR SINE MIR 1 79 -183 413 294 57 8 chr1 26492797 26492936 -255700728 - MIR SINE MIR -48 160 15 1129 201 13 66 chr1 26492979 26493297 -255700367 + L1MD2 LINE L1 6052 6352 -7 763 254 6 0 chr1 26493543 26493712 -255699952 - MER63A DNA MER1_type 0 210 41 237 283 54 22 chr1 26494055 26494147 -255699517 + MIR3 SINE MIR 82 176 -32 328 238 48 12 chr1 26494213 26494297 -255699367 + MIR SINE MIR 108 194 -68 2061 151 3 0 chr1 26494639 26494937 -255698727 + AluJb SINE Alu 1 299 -13 321 91 0 0 chr1 26495144 26495188 -255698476 - AluSq SINE Alu -257 44 1 1850 124 87 0 chr1 26495189 26495464 -255698200 - AluSx SINE Alu -13 299 1 1173 128 31 0 chr1 26495464 26495659 -255698005 - L1MB3 LINE L1 -354 5829 5629 225 224 0 0 chr1 26495662 26495720 -255697944 + MLT1J1 LTR MaLR 374 431 -15 551 283 6 57 chr1 26495764 26495941 -255697723 - MIR SINE MIR -14 248 81 494 267 51 97 chr1 26495943 26496254 -255697410 - L2 LINE L2 -94 3178 2882 201 243 68 68 chr1 26496240 26496314 -255697350 - MIR SINE MIR -187 75 2 * 211 234 43 0 chr1 26496359 26496406 -255697258 + MIR3 SINE MIR 159 207 -1 2325 102 0 3 chr1 26496716 26497011 -255696653 + AluSx SINE Alu 1 294 -18 1760 144 11 39 chr1 26497297 26497581 -255696083 + AluSx SINE Alu 2 277 -35 787 139 16 8 chr1 26497685 26497807 -255695857 - AluSq/x SINE Alu -188 124 2 767 246 105 13 chr1 26498318 26498546 -255695118 - MIR SINE MIR -7 255 7 622 223 0 105 chr1 26498711 26498874 -255694790 + MER63A DNA MER1_type 5 139 -1549 933 265 0 58 chr1 26498874 26499187 -255694477 + AluY SINE Alu 1 295 -6 622 223 0 105 chr1 26499187 26499252 -255694412 + MER63A DNA MER1_type 139 209 -1 199 279 88 83 chr1 26499464 26499668 -255693996 + L2 LINE L2 2852 3056 -216 632 167 18 0 chr1 26499698 26499812 -255693852 - MSTD LTR MaLR 0 396 281 651 261 4 50 chr1 26500053 26500313 -255693351 + AluSx SINE Alu 42 289 -23 198 0 0 0 chr1 26500313 26500335 -255693329 + (TTAAA)n Simple_repeat Simple_repeat 3 24 0 458 246 7 36 chr1 26500402 26500540 -255693124 - MER117 DNA MER1_type -38 159 26 706 220 225 14 chr1 26500544 26500959 -255692705 - MLT1H1 LTR MaLR -24 531 8 633 286 71 50 chr1 26501315 26501696 -255691968 - L2 LINE L2 -2 3311 2923 681 162 0 8 chr1 26501705 26501822 -255691842 - AluJ SINE Alu -11 301 186 943 71 0 0 chr1 26501828 26501940 -255691724 - AluJ SINE Alu -180 132 21 242 253 67 0 chr1 26502045 26502120 -255691544 - L2 LINE L2 -595 2719 2640 1188 168 0 0 chr1 26502258 26502431 -255691233 + AluJo SINE Alu 7 179 -133 270 81 0 0 chr1 26502535 26502572 -255691092 + (GA)n Simple_repeat Simple_repeat 1 37 0 189 243 14 68 chr1 26502775 26502849 -255690815 - L2 LINE L2 -817 2497 2428 444 250 61 71 chr1 26503136 26503332 -255690332 - MLT1K LTR MaLR -339 249 56 716 313 63 14 chr1 26503370 26503654 -255690010 - L3 LINE CR1 -25 1552 1255 208 311 0 27 chr1 26503711 26503785 -255689879 + MIR SINE MIR 23 94 -114 509 301 26 7 chr1 26503789 26503942 -255689722 - MIR SINE MIR -97 165 10 334 213 0 0 chr1 26503934 26503995 -255689669 + MIR SINE MIR 79 139 -69 * 763 209 5 78 chr1 26504001 26504024 -255689640 - MER5A DNA MER1_type -12 177 154 1744 126 4 4 chr1 26504024 26504271 -255689393 - AluJb SINE Alu -53 259 13 763 209 5 78 chr1 26504271 26504438 -255689226 - MER5A DNA MER1_type -35 154 1 2028 105 54 17 chr1 26504524 26504818 -255688846 - AluSx SINE Alu -7 305 1 276 30 0 0 chr1 26504845 26504878 -255688786 + (TG)n Simple_repeat Simple_repeat 1 33 0 228 35 0 0 chr1 26504877 26504906 -255688758 + (GA)n Simple_repeat Simple_repeat 1 29 0 * 1957 144 37 42 chr1 26505002 26505383 -255688281 - Tigger2a DNA MER2_type -51 383 5 871 176 57 10 chr1 26505386 26505579 -255688085 + L1MB7 LINE L1 5964 6165 -19 187 189 0 27 chr1 26505614 26505651 -255688013 - MIR SINE MIR -189 73 38 1015 154 0 12 chr1 26506204 26506366 -255687298 + AluJo SINE Alu 13 172 -140 434 259 244 0 chr1 26506564 26506761 -255686903 - MIR SINE MIR -6 256 12 276 271 47 19 chr1 26506808 26506915 -255686749 + MIR SINE MIR 38 147 -61 2366 78 3 3 chr1 26508661 26508956 -255684708 + AluSg SINE Alu 1 295 -15 2277 97 3 3 chr1 26509333 26509632 -255684032 + AluSx SINE Alu 1 299 -13 558 292 74 25 chr1 26511030 26511232 -255682432 - MIR SINE MIR -4 258 47 291 114 0 0 chr1 26511713 26511757 -255681907 + (TA)n Simple_repeat Simple_repeat 2 45 0 250 296 133 0 chr1 26511757 26511855 -255681809 + MIR SINE MIR 152 262 0 1134 176 73 11 chr1 26512102 26512363 -255681301 - L1ME2 LINE L1 -19 6145 5869 623 168 75 0 chr1 26512937 26513044 -255680620 - FLAM_C SINE Alu -27 116 2 435 243 88 14 chr1 26513387 26513535 -255680129 + MER103 DNA DNA 6 164 -2 306 207 156 43 chr1 26514254 26514375 -255679289 + MIR SINE MIR 10 121 -87 698 269 16 16 chr1 26515197 26515383 -255678281 - MIR3 SINE MIR -7 201 16 832 204 98 27 chr1 26515399 26515624 -255678040 - MIR SINE MIR -10 252 12 766 276 74 21 chr1 26516287 26516532 -255677132 - MIR SINE MIR -1 261 5 476 313 163 13 chr1 26516838 26517065 -255676599 + MIR SINE MIR 2 262 0 186 43 0 0 chr1 26517661 26517684 -255675980 + (CACCC)n Simple_repeat Simple_repeat 3 25 0 437 295 133 0 chr1 26518426 26518599 -255675065 + MIR SINE MIR 35 230 -32 521 302 79 8 chr1 26518719 26519015 -255674649 - L1ME2 LINE L1 -337 5784 5445 2705 49 3 0 chr1 26519276 26519581 -255674083 + AluSp SINE Alu 1 306 -7 195 331 60 60 chr1 26519826 26519959 -255673705 + MIR SINE MIR 109 241 -21 217 150 0 0 chr1 26520353 26520393 -255673271 - L2 LINE L2 -1 3312 3273 443 265 75 45 chr1 26520601 26520765 -255672899 + MIR SINE MIR 30 203 -59 428 106 12 0 chr1 26520765 26520850 -255672814 + (TA)n Simple_repeat Simple_repeat 1 86 0 443 265 75 45 chr1 26520850 26520885 -255672779 + MIR SINE MIR 203 235 -27 242 228 63 25 chr1 26520914 26520993 -255672671 - MIR SINE MIR -64 144 63 209 276 69 0 chr1 26521606 26521664 -255672000 - MER91B DNA MER1_type -128 62 1 2041 103 4 0 chr1 26522123 26522385 -255671279 - AluSq SINE Alu -50 263 1 222 304 109 0 chr1 26522391 26522483 -255671181 + MIR SINE MIR 86 187 -75 701 219 79 14 chr1 26522503 26522713 -255670951 - MIR SINE MIR -8 254 33 678 326 25 17 chr1 26523572 26523808 -255669856 + MIR SINE MIR 13 250 -12 508 272 105 62 chr1 26523788 26524045 -255669619 - L2 LINE L2 -22 3291 3024 * 344 336 26 9 chr1 26524748 26524864 -255668800 + L2 LINE L2 3188 3305 -8 346 193 53 44 chr1 26524895 26525009 -255668655 + MIR SINE MIR 27 141 -121 557 313 71 21 chr1 26526754 26526994 -255666670 + MIR SINE MIR 5 256 -6 566 207 152 0 chr1 26527523 26527668 -255665996 + MIR SINE MIR 19 185 -77 252 304 0 0 chr1 26528284 26528378 -255665286 + MIR SINE MIR 44 137 -71 26 0 0 0 chr1 26529308 26529334 -255664330 + GC_rich Low_complexity Low_complexity 1 26 0 353 324 57 23 chr1 26529504 26529680 -255663984 - MIR SINE MIR 0 262 81 319 296 21 35 chr1 26529754 26529896 -255663768 + L1ME4a LINE L1 5966 6105 -16 812 166 118 0 chr1 26529950 26529978 -255663686 + MER5A DNA MER1_type 1 24 -165 180 0 0 0 chr1 26529978 26529998 -255663666 + (CAT)n Simple_repeat Simple_repeat 1 20 0 812 166 118 0 chr1 26529998 26530138 -255663526 + MER5A DNA MER1_type 24 189 0 416 269 67 8 chr1 26530247 26530381 -255663283 + MIR SINE MIR 47 188 -74 249 262 136 19 chr1 26530667 26530770 -255662894 + L2 LINE L2 3195 3309 -4 250 224 71 12 chr1 26531205 26531290 -255662374 - MIR SINE MIR 0 262 173 560 283 56 28 chr1 26531378 26531558 -255662106 - MIR SINE MIR -76 186 2 371 277 43 77 chr1 26532648 26532883 -255660781 + MIR SINE MIR 28 254 -8 350 330 0 0 chr1 26533058 26533161 -255660503 + CT-rich Low_complexity Low_complexity 3 105 0 443 221 133 33 chr1 26533216 26533397 -255660267 + L2 LINE L2 3113 3311 -2 289 213 199 22 chr1 26533521 26533657 -255660007 + MIR SINE MIR 38 197 -65 253 384 9 0 chr1 26533812 26533924 -255659740 - MIR SINE MIR -1 261 149 * 532 246 73 85 chr1 26533914 26534174 -255659490 + L2 LINE L2 3057 3313 0 254 238 127 0 chr1 26534152 26534215 -255659449 - MIR SINE MIR -118 144 74 * 636 323 30 4 chr1 26534906 26535138 -255658526 + MIR SINE MIR 7 244 -18 228 259 0 0 chr1 26535349 26535407 -255658257 + MIR SINE MIR 37 94 -114 292 328 53 0 chr1 26535461 26535592 -255658072 - MIR SINE MIR 0 262 125 295 343 22 8 chr1 26536250 26536384 -255657280 + MIR SINE MIR 48 183 -79 758 127 24 160 chr1 26536658 26536812 -255656852 + MER5A DNA MER1_type 1 120 -69 1076 187 0 0 chr1 26536812 26537026 -255656638 - L1MA6 LINE L1 -9 6291 6078 758 127 24 160 chr1 26537026 26537084 -255656580 + MER5A DNA MER1_type 120 184 -5 735 235 59 15 chr1 26537114 26537318 -255656346 + MIR SINE MIR 50 262 0 198 200 0 22 chr1 26537396 26537441 -255656223 + L2 LINE L2 3014 3057 -215 404 148 115 25 chr1 26538426 26538548 -255655116 + L2 LINE L2 2906 3038 -234 430 344 0 0 chr1 26539189 26539352 -255654312 - MER117 DNA MER1_type -34 163 1 637 283 132 0 chr1 26540261 26540473 -255653191 - MIR SINE MIR -11 251 12 462 263 75 0 chr1 26540482 26540615 -255653049 + MIR SINE MIR 106 248 -14 460 286 54 22 chr1 26540631 26540816 -255652848 - MIR SINE MIR -64 198 8 2330 84 59 11 chr1 26540913 26541271 -255652393 - THE1C LTR MaLR 0 375 1 787 214 167 0 chr1 26541499 26541733 -255651931 - ORSL DNA AcHobo 0 275 3 489 17 0 0 chr1 26541742 26541800 -255651864 + (CA)n Simple_repeat Simple_repeat 2 59 0 1397 206 0 18 chr1 26542203 26542485 -255651179 + AluSx SINE Alu 23 299 -13 1418 254 44 106 chr1 26542668 26543350 -255650314 + MLT1E2-int LTR MaLR 692 1331 -40 2239 80 4 0 chr1 26543393 26543668 -255649996 + AluSp SINE Alu 29 304 -9 388 209 82 73 chr1 26543706 26543816 -255649848 + MLT1E2 LTR MaLR 3 113 -513 579 260 61 6 chr1 26543816 26543997 -255649667 + MSTD LTR MaLR 1 191 -205 1834 148 54 3 chr1 26543998 26544295 -255649369 + AluSx SINE Alu 1 312 0 272 104 42 0 chr1 26544304 26544352 -255649312 + GA-rich Low_complexity Low_complexity 4 53 0 1253 50 11 11 chr1 26544352 26544532 -255649132 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1134 153 5 11 chr1 26544660 26544850 -255648814 + MSTD LTR MaLR 208 396 0 * 1507 214 49 49 chr1 26544850 26545321 -255648343 + MLT1E2 LTR MaLR 109 624 0 352 355 26 19 chr1 26545402 26545557 -255648107 + MIR SINE MIR 86 241 -21 230 223 140 76 chr1 26545981 26546138 -255647526 - L1ME4a LINE L1 -18 6103 5937 850 228 14 38 chr1 26546139 26546305 -255647359 - MER58A DNA MER1_type -2196 224 63 1907 157 17 10 chr1 26546305 26546605 -255647059 + AluJb SINE Alu 1 302 -10 850 228 14 38 chr1 26546605 26546649 -255647015 - MER58A DNA MER1_type -2357 63 19 1047 236 75 13 chr1 26546783 26547088 -255646576 - MER33 DNA MER1_type 0 324 1 1365 165 13 25 chr1 26547331 26547567 -255646097 + AluJo SINE Alu 48 280 -32 404 277 215 11 chr1 26547729 26547906 -255645758 + MIR SINE MIR 7 219 -43 1100 249 138 2 chr1 26548771 26549200 -255644464 + LTR16C LTR ERVL 5 491 0 448 250 18 9 chr1 26550596 26550708 -255642956 + MIR SINE MIR 26 138 -70 222 310 14 0 chr1 26551692 26551763 -255641901 - MIR SINE MIR -56 152 81 209 105 0 26 chr1 26551916 26551954 -255641710 + (CA)n Simple_repeat Simple_repeat 1 37 0 2610 58 0 7 chr1 26552218 26552526 -255641138 - AluSq SINE Alu -7 306 1 244 172 11 20 chr1 26553231 26553300 -255640364 - MER91 DNA MER1_type 0 140 1 301 239 15 0 chr1 26553770 26553837 -255639827 - MIR SINE MIR -76 132 65 268 217 72 14 chr1 26554836 26554927 -255638737 + MIR SINE MIR 53 145 -63 635 226 84 32 chr1 26555037 26555227 -255638437 + MIR SINE MIR 6 205 -57 230 307 13 0 chr1 26555246 26555321 -255638343 + (CTA)n Simple_repeat Simple_repeat 2 77 0 2418 79 0 13 chr1 26555558 26555862 -255637802 - AluY SINE Alu -11 300 1 583 274 73 27 chr1 26556176 26556395 -255637269 + MIR SINE MIR 2 230 -32 194 239 326 0 chr1 26556415 26556507 -255637157 - MIR3 SINE MIR -51 157 36 433 294 21 42 chr1 26557560 26557703 -255635961 - MIR SINE MIR -67 195 56 462 309 73 0 chr1 26558127 26558292 -255635372 + MIR SINE MIR 11 187 -75 274 295 25 8 chr1 26558647 26558769 -255634895 + CT-rich Low_complexity Low_complexity 1 124 0 629 193 62 57 chr1 26559598 26559774 -255633890 + AluJb SINE Alu 135 311 -1 273 241 25 0 chr1 26561032 26561111 -255632553 + MIR SINE MIR 66 146 -62 329 290 89 25 chr1 26561271 26561445 -255632219 - MIR SINE MIR -62 146 3 628 221 82 45 chr1 26561499 26561743 -255631921 - MIR SINE MIR -11 251 4 321 343 30 15 chr1 26562458 26562592 -255631072 - MIR SINE MIR -75 187 52 567 268 47 34 chr1 26563512 26563758 -255629906 - MIR SINE MIR -5 257 14 465 277 51 75 chr1 26563826 26564079 -255629585 - L3 LINE CR1 -1 1576 1330 490 301 25 20 chr1 26564261 26564457 -255629207 - MIR SINE MIR -7 255 59 237 220 0 34 chr1 26564516 26564575 -255629089 + MIR SINE MIR 76 132 -130 439 328 0 0 chr1 26564782 26564904 -255628760 - MIR SINE MIR 0 262 141 399 234 131 29 chr1 26565118 26565293 -255628371 + L1ME4a LINE L1 5929 6121 0 500 256 106 6 chr1 26565753 26565913 -255627751 - MIR SINE MIR -1 261 86 384 259 184 13 chr1 26567091 26567249 -255626415 - MIR SINE MIR -12 250 66 207 246 53 0 chr1 26567948 26568005 -255625659 + MIR SINE MIR 191 250 -12 477 250 10 0 chr1 26568425 26568525 -255625139 + MIR SINE MIR 51 151 -111 239 325 67 25 chr1 26568545 26568665 -255624999 + L2 LINE L2 3145 3269 -3 288 220 23 28 chr1 26568679 26568856 -255624808 + (TGGG)n Simple_repeat Simple_repeat 3 178 0 185 294 59 0 chr1 26569520 26569588 -255624076 + MIR SINE MIR 158 229 -33 185 62 0 31 chr1 26570440 26570472 -255623192 + (TA)n Simple_repeat Simple_repeat 2 32 0 593 234 95 0 chr1 26571017 26571175 -255622489 - MER63A DNA MER1_type -10 200 28 2497 88 0 0 chr1 26571202 26571508 -255622156 - AluSg SINE Alu -4 306 1 2474 73 10 0 chr1 26571547 26571848 -255621816 - AluY SINE Alu -7 304 1 839 191 55 41 chr1 26572242 26572462 -255621202 + MER96B DNA MER1_type? 2 224 -193 734 186 36 12 chr1 26572708 26572875 -255620789 + MER5B DNA MER1_type 7 177 -1 207 114 0 0 chr1 26573411 26573446 -255620218 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 260 333 101 0 chr1 26574000 26574138 -255619526 - MIR3 SINE MIR -21 187 36 2134 128 10 13 chr1 26575472 26575777 -255617887 + AluSx SINE Alu 1 304 -8 370 240 39 62 chr1 26576519 26576648 -255617016 + MIR SINE MIR 120 245 -17 659 247 37 11 chr1 26576675 26576865 -255616799 + MER117 DNA MER1_type 1 195 -2 537 156 18 18 chr1 26577120 26577229 -255616435 + MIR3 SINE MIR 100 208 0 288 347 62 0 chr1 26577524 26577668 -255615996 - MIR3 SINE MIR -23 185 33 462 367 48 20 chr1 26577680 26577928 -255615736 + MIR SINE MIR 8 262 0 546 281 31 12 chr1 26578772 26578932 -255614732 + MIR SINE MIR 23 185 -77 212 188 0 0 chr1 26579094 26579154 -255614510 - L2 LINE L2 -296 2976 2917 212 261 31 15 chr1 26579579 26579644 -255614020 + MIR SINE MIR 8 73 -189 240 279 64 57 chr1 26581031 26581171 -255612493 - MIR SINE MIR -66 196 56 411 245 101 22 chr1 26582167 26582306 -255611358 + MER103 DNA DNA 17 166 0 2191 117 17 0 chr1 26582832 26583123 -255610541 - AluSx SINE Alu -16 296 1 366 292 175 7 chr1 26583148 26583302 -255610362 - MIR SINE MIR -70 192 13 2305 124 0 0 chr1 26584008 26584314 -255609350 - AluSx SINE Alu -6 306 1 522 229 83 47 chr1 26584316 26584508 -255609156 - MIR SINE MIR -59 203 5 246 310 171 19 chr1 26584662 26584820 -255608844 + MIR SINE MIR 78 259 -3 194 205 26 0 chr1 26584811 26584850 -255608814 - L2 LINE L2 -2 3270 3231 * 382 286 21 11 chr1 26585342 26585467 -255608197 - MIR SINE MIR -61 147 70 285 317 148 7 chr1 26585466 26585608 -255608056 + MIR SINE MIR 90 251 -11 * 1730 166 6 54 chr1 26585627 26585809 -255607855 - AluJo SINE Alu -14 298 136 2577 58 0 0 chr1 26585809 26586100 -255607564 - AluY SINE Alu -20 291 1 1730 166 6 54 chr1 26586100 26586230 -255607434 - AluJo SINE Alu -176 136 1 321 353 0 0 chr1 26586440 26586607 -255607057 + L1ME4a LINE L1 5694 5860 -261 2197 126 0 10 chr1 26586615 26586917 -255606747 + AluSx SINE Alu 1 299 -13 2340 94 0 0 chr1 26587205 26587521 -255606143 + AluSx SINE Alu 1 316 0 217 284 159 0 chr1 26587636 26587724 -255605940 + MIR SINE MIR 154 255 -7 457 267 53 8 chr1 26588342 26588473 -255605191 + MIR SINE MIR 13 149 -113 339 304 39 0 chr1 26589379 26589481 -255604183 + MIR3 SINE MIR 50 155 -53 2599 67 0 3 chr1 26589556 26589868 -255603796 - AluY SINE Alu 0 311 1 2065 146 0 3 chr1 26589932 26590233 -255603431 - AluJb SINE Alu -10 302 3 2295 121 0 0 chr1 26591333 26591630 -255602034 - AluSx SINE Alu -15 297 1 228 338 0 14 chr1 26591877 26591948 -255601716 - L2 LINE L2 0 3272 3203 558 322 48 45 chr1 26592167 26592288 -255601376 + L2 LINE L2 2597 2716 -598 2054 99 42 28 chr1 26592288 26592572 -255601092 + AluSg SINE Alu 1 288 -22 558 322 48 45 chr1 26592572 26592829 -255600835 + L2 LINE L2 2716 2976 -338 490 263 58 13 chr1 26593160 26593316 -255600348 + MIR SINE MIR 79 241 -21 180 0 0 0 chr1 26593319 26593339 -255600325 + (TCC)n Simple_repeat Simple_repeat 2 21 0 1174 201 33 15 chr1 26593388 26593661 -255600003 + MER33 DNA MER1_type 6 283 -41 2271 79 32 0 chr1 26593663 26593943 -255599721 + AluY SINE Alu 1 289 -22 21 36 0 0 chr1 26593986 26594014 -255599650 + AT_rich Low_complexity Low_complexity 1 28 0 713 294 55 8 chr1 26594269 26594507 -255599157 - MIR SINE MIR -12 250 2 206 188 0 21 chr1 26594644 26594692 -255598972 - MIR SINE MIR -111 151 105 354 228 236 16 chr1 26596327 26596454 -255597210 - MIR SINE MIR -74 188 34 192 276 113 0 chr1 26597747 26597851 -255595813 - MIR SINE MIR -75 133 34 1976 163 3 3 chr1 26598216 26598522 -255595142 - AluJo SINE Alu -6 306 1 258 347 91 15 chr1 26599360 26599559 -255594105 - MIR SINE MIR -40 222 9 346 319 59 0 chr1 26600095 26600230 -255593434 - MIR SINE MIR -74 188 46 * 370 268 188 15 chr1 26600221 26600403 -255593261 - MIR SINE MIR -45 217 7 508 194 328 0 chr1 26600842 26601028 -255592636 - MIR SINE MIR -13 249 3 326 269 221 0 chr1 26601069 26601214 -255592450 + MIR3 SINE MIR 29 205 -3 730 179 58 6 chr1 26601413 26601569 -255592095 - MER53 DNA DNA -23 166 3 392 276 78 0 chr1 26601783 26601899 -255591765 - MER63 DNA MER1_type -311 751 1 224 229 0 0 chr1 26602246 26602294 -255591370 + MIR SINE MIR 176 223 -39 219 69 0 0 chr1 26602306 26602335 -255591329 + (CACCAT)n Simple_repeat Simple_repeat 1 29 0 188 375 16 0 chr1 26602468 26602532 -255591132 - L2 LINE L2 -8 3264 3200 594 287 78 10 chr1 26602815 26603034 -255590630 + MIR SINE MIR 17 240 -22 269 317 83 14 chr1 26603432 26603577 -255590087 - MIR3 SINE MIR -6 202 48 400 279 57 0 chr1 26604153 26604275 -255589389 - MIR3 SINE MIR -21 187 59 215 224 0 0 chr1 26604781 26604830 -255588834 - L2 LINE L2 -3 3269 3221 476 230 137 12 chr1 26604833 26604994 -255588670 + MIR SINE MIR 82 262 0 325 349 76 0 chr1 26605230 26605402 -255588262 - MIR3 SINE MIR -3 205 21 2022 115 21 21 chr1 26605742 26606028 -255587636 - AluSx SINE Alu -26 286 1 1793 163 10 13 chr1 26606109 26606287 -255587377 - AluJo SINE Alu -12 300 122 198 0 0 0 chr1 26606287 26606309 -255587355 + (TTTTC)n Simple_repeat Simple_repeat 4 25 0 1793 163 10 13 chr1 26606309 26606431 -255587233 - AluJo SINE Alu -190 122 1 1962 171 37 17 chr1 26607692 26608102 -255585562 + LTR52 LTR ERVL 1 418 -3 388 316 47 18 chr1 26608316 26608487 -255585177 - MIR SINE MIR -84 178 3 5538 236 56 17 chr1 26609002 26610714 -255582950 + L1ME3A LINE L1 37 1822 -4574 2577 59 0 0 chr1 26610738 26611041 -255582623 - AluY SINE Alu -8 303 1 21 57 0 0 chr1 26611044 26611079 -255582585 + AT_rich Low_complexity Low_complexity 1 35 0 235 73 171 0 chr1 26611091 26611132 -255582532 + Alu SINE Alu 1 48 -255 1173 139 0 0 chr1 26611140 26611305 -255582359 + AluSg/x SINE Alu 129 293 -17 1060 176 10 10 chr1 26611311 26611510 -255582154 + L1ME3A LINE L1 1868 2066 -4330 238 111 83 0 chr1 26611513 26611549 -255582115 - MER58A DNA MER1_type -1 223 185 475 29 14 29 chr1 26611551 26611621 -255582043 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 1019 138 13 13 chr1 26611633 26611785 -255581879 - FRAM SINE Alu -26 150 1 1007 226 0 0 chr1 26611785 26611971 -255581693 - MER58A DNA MER1_type -33 191 6 1898 237 53 6 chr1 26611976 26612675 -255580989 + L1ME3A LINE L1 2057 2740 -3475 991 253 51 22 chr1 26612649 26613005 -255580659 + L1ME3A LINE L1 3626 3991 -2224 * 2377 209 55 16 chr1 26612999 26613558 -255580106 - L1ME1 LINE L1 -253 5913 5333 * 3216 233 73 62 chr1 26613555 26614304 -255579360 + L1ME3A LINE L1 3970 4710 -1523 503 140 9 56 chr1 26614304 26614411 -255579253 + L1MA5 LINE L1 6199 6300 0 3216 233 73 62 chr1 26614411 26615179 -255578485 + L1ME3A LINE L1 4710 5510 -723 2429 186 63 49 chr1 26615183 26615851 -255577813 + L1ME3A LINE L1 5563 6239 0 1984 126 30 10 chr1 26616995 26617296 -255576368 - AluSq SINE Alu -6 307 1 984 217 155 10 chr1 26617301 26617616 -255576048 - L1MB8 LINE L1 0 6247 5885 629 132 270 6 chr1 26617611 26617770 -255575894 - L1MB8 LINE L1 -639 5594 5394 * 1735 147 56 0 chr1 26617800 26618085 -255575579 + AluJo SINE Alu 12 312 0 8408 209 60 28 chr1 26618116 26620313 -255573351 - L1MB8 LINE L1 -827 5388 3105 1989 91 4 4 chr1 26620313 26620566 -255573098 - AluSq SINE Alu -59 254 2 8408 209 60 28 chr1 26620566 26620795 -255572869 - L1MB8 LINE L1 -3110 3105 2885 4883 235 64 78 chr1 26620801 26622156 -255571508 - L1MB8 LINE L1 -3467 2748 1376 779 188 17 33 chr1 26622156 26622337 -255571327 - L1MB3 LINE L1 -2 6181 6004 4883 235 64 78 chr1 26622337 26622753 -255570911 - L1MB8 LINE L1 -4839 1376 956 2171 96 17 0 chr1 26622753 26623045 -255570619 - AluSg1 SINE Alu -12 297 1 4883 235 64 78 chr1 26623045 26624010 -255569654 - L1MB8 LINE L1 -5259 956 93 1810 161 29 0 chr1 26624395 26624675 -255568989 + AluJb SINE Alu 1 288 -24 4381 168 12 4 chr1 26624831 26625557 -255568107 + MER44D DNA MER2_type 1 604 -1 2179 100 0 4 chr1 26625638 26625948 -255567716 + AluSc SINE Alu 1 309 0 399 235 50 8 chr1 26626226 26626345 -255567319 + MIR SINE MIR 47 170 -92 604 247 134 26 chr1 26626444 26626675 -255566989 - MIR SINE MIR 0 262 7 1692 173 11 11 chr1 26626761 26627044 -255566620 - AluJo SINE Alu -24 288 6 343 300 7 21 chr1 26627201 26627341 -255566323 - L3 LINE CR1 -167 1410 1273 475 208 75 0 chr1 26627371 26627477 -255566187 - MER112 DNA MER1_type -146 114 1 490 199 91 34 chr1 26627660 26627836 -255565828 + L2 LINE L2 3014 3199 -114 766 156 8 0 chr1 26627887 26628009 -255565655 + FLAM_C SINE Alu 2 124 -19 180 0 0 0 chr1 26628066 26628086 -255565578 + (TGAA)n Simple_repeat Simple_repeat 2 21 0 320 347 16 0 chr1 26628519 26628643 -255565021 - MIR3 SINE MIR -49 159 34 2357 77 0 7 chr1 26629357 26629655 -255564009 - AluSx SINE Alu -16 296 1 187 309 108 44 chr1 26629774 26629841 -255563823 + L2 LINE L2 2715 2776 -538 2123 94 30 3 chr1 26629841 26630139 -255563525 - AluJb SINE Alu -6 306 1 187 309 108 44 chr1 26630139 26630275 -255563389 + L2 LINE L2 2776 2931 -383 239 280 0 27 chr1 26633174 26633249 -255560415 + L2 LINE L2 3200 3272 0 438 290 36 0 chr1 26633344 26633482 -255560182 - MIR SINE MIR -52 210 68 1521 157 92 0 chr1 26633669 26633930 -255559734 + AluJo SINE Alu 12 296 -16 269 194 90 0 chr1 26634007 26634074 -255559590 - MIR SINE MIR -109 153 81 2187 108 20 0 chr1 26635117 26635412 -255558252 + AluSc SINE Alu 1 301 -8 1863 146 3 17 chr1 26635529 26635824 -255557840 + AluJo SINE Alu 1 291 -21 813 311 34 6 chr1 26635920 26636241 -255557423 - L1ME4a LINE L1 -191 5930 5601 1366 149 39 140 chr1 26636345 26636681 -255556983 + AluJb SINE Alu 1 302 0 414 295 8 8 chr1 26636704 26636833 -255556831 - MIR3 SINE MIR -23 185 57 331 330 0 0 chr1 26636866 26636972 -255556692 - MIR SINE MIR 0 262 157 317 246 119 24 chr1 26636976 26637102 -255556562 + MIR SINE MIR 123 260 -2 * 510 277 20 7 chr1 26637100 26637248 -255556416 - MIR SINE MIR -105 157 8 537 238 14 28 chr1 26637604 26637737 -255555927 + MIR3 SINE MIR 29 159 -49 225 314 0 0 chr1 26637737 26637807 -255555857 - MER5B DNA MER1_type -3 175 106 684 246 38 11 chr1 26638184 26638367 -255555297 - L1ME3A LINE L1 -7 6163 5976 1064 190 99 74 chr1 26638633 26638683 -255554981 - MER74B LTR ERVL -67 555 508 2029 51 47 8 chr1 26638683 26638940 -255554724 + AluY SINE Alu 16 282 -29 1064 190 99 74 chr1 26638940 26639334 -255554330 - MER74B LTR ERVL -114 508 2 261 296 130 12 chr1 26639543 26639705 -255553959 + MIR SINE MIR 47 227 -35 252 291 0 55 chr1 26639860 26639970 -255553694 - MLT1K LTR MaLR -4 584 481 1373 64 137 20 chr1 26640535 26640739 -255552925 - MER30 DNA MER1_type 0 230 3 227 254 45 15 chr1 26640852 26640919 -255552745 + MIR SINE MIR 5 73 -189 314 174 65 2 chr1 26640920 26641005 -255552659 - AluJ/FRAM SINE Alu -1 301 221 561 205 24 8 chr1 26641334 26641461 -255552203 - MIR SINE MIR -76 186 58 278 141 320 0 chr1 26641526 26641604 -255552060 - MER94 DNA DNA 0 134 32 1741 135 0 0 chr1 26641604 26641848 -255551816 - AluSx SINE Alu -12 300 57 3590 122 43 46 chr1 26643108 26643283 -255550381 + MER39B LTR ERV1 1 175 -478 1728 121 29 46 chr1 26643283 26643564 -255550100 + AluJb SINE Alu 11 286 -26 420 20 0 0 chr1 26643564 26643613 -255550051 + (GA)n Simple_repeat Simple_repeat 2 50 0 3590 122 43 46 chr1 26643613 26644091 -255549573 + MER39B LTR ERV1 173 653 0 334 167 0 0 chr1 26644383 26644437 -255549227 - MER116 DNA Mariner -1 79 26 1577 96 0 10 chr1 26644437 26644645 -255549019 + AluSx SINE Alu 1 206 -106 620 211 94 0 chr1 26644697 26644868 -255548796 - Charlie2a DNA MER1_type -169 2693 2507 * 1173 220 33 23 chr1 26644861 26645161 -255548503 - MER93b LTR ERV1 -59 314 12 2009 197 124 98 chr1 26645168 26645542 -255548122 - Charlie2a DNA MER1_type -400 2462 2099 2300 104 3 25 chr1 26645542 26645859 -255547805 - AluSq SINE Alu -3 310 1 2009 197 124 98 chr1 26645859 26646394 -255547270 - Charlie2a DNA MER1_type -763 2099 1529 725 264 92 21 chr1 26646393 26646677 -255546987 - Charlie2a DNA MER1_type -2388 474 171 * 186 259 19 0 chr1 26647176 26647230 -255546434 + L2 LINE L2 3008 3062 -251 2282 84 11 0 chr1 26647451 26647736 -255545928 - AluSp SINE Alu -25 288 1 205 254 32 0 chr1 26647813 26647876 -255545788 - MIR SINE MIR 0 262 198 1110 195 85 0 chr1 26647879 26648115 -255545549 + MIR SINE MIR 1 256 -6 279 150 0 0 chr1 26648297 26648337 -255545327 - MER103 DNA DNA -77 89 50 397 310 60 23 chr1 26648350 26648566 -255545098 - MIR SINE MIR -25 237 14 3064 198 31 38 chr1 26649091 26650646 -255543018 + L1ME4a LINE L1 2049 5293 -1089 751 232 26 55 chr1 26650664 26650936 -255542728 - L1MDa LINE L1 -4071 2471 2208 359 183 49 0 chr1 26650932 26651014 -255542650 + L1ME4a LINE L1 5330 5415 -967 * 263 261 270 0 chr1 26651012 26651127 -255542537 - L1MDa LINE L1 -5919 621 476 * 2117 143 28 25 chr1 26651127 26651483 -255542181 - MLT1A1 LTR MaLR 0 365 9 1727 167 20 68 chr1 26651498 26651796 -255541868 - L1MDa LINE L1 -6145 395 119 2284 93 0 32 chr1 26651796 26652108 -255541556 - AluSq SINE Alu -11 302 1 1727 167 20 68 chr1 26652108 26652205 -255541459 - L1MDa LINE L1 -6421 119 19 2417 59 0 3 chr1 26652279 26652568 -255541096 + AluY SINE Alu 1 288 -23 182 196 22 0 chr1 26653626 26653672 -255539992 - MIR SINE MIR -126 82 36 851 281 44 35 chr1 26654198 26654321 -255539343 + L1ME4a LINE L1 5839 5959 -398 941 165 41 16 chr1 26654321 26654515 -255539149 + L1PA16 LINE L1 5965 6163 -3 851 281 44 35 chr1 26654515 26654825 -255538839 + L1ME4a LINE L1 5959 6276 -81 21 36 0 0 chr1 26654887 26654915 -255538749 + AT_rich Low_complexity Low_complexity 1 28 0 923 276 60 3 chr1 26656096 26656397 -255537267 + LTR16C LTR ERVL 173 490 -1 217 274 75 55 chr1 26657034 26657180 -255536484 + MER5A DNA MER1_type 41 189 0 896 254 44 4 chr1 26657645 26657873 -255535791 - MIR SINE MIR 0 262 26 1536 170 3 70 chr1 26657980 26658292 -255535372 + AluJo SINE Alu 3 293 -19 472 216 11 0 chr1 26658318 26658406 -255535258 - AluS SINE Alu -217 95 7 721 232 76 16 chr1 26658757 26658942 -255534722 - MER117 DNA MER1_type -1 196 1 438 174 0 70 chr1 26659691 26659777 -255533887 + MER63 DNA MER1_type 42 747 -315 391 217 58 80 chr1 26659837 26659975 -255533689 - MIR3 SINE MIR -54 154 20 484 278 162 15 chr1 26660077 26660275 -255533389 + MIR SINE MIR 19 245 -17 293 250 60 36 chr1 26660713 26660797 -255532867 + MER5B DNA MER1_type 1 86 -92 24 0 0 0 chr1 26661147 26661171 -255532493 + AT_rich Low_complexity Low_complexity 1 24 0 183 250 181 0 chr1 26661180 26661252 -255532412 - L3 LINE CR1 -908 669 585 739 328 92 35 chr1 26661292 26661379 -255532285 - L2 LINE L2 -27 3286 3205 342 0 0 0 chr1 26661379 26661417 -255532247 + (TG)n Simple_repeat Simple_repeat 2 39 0 739 328 92 35 chr1 26661417 26661568 -255532096 - L2 LINE L2 -108 3205 3064 4726 72 10 3 chr1 26661568 26662190 -255531474 - L1PA11 LINE L1 -2 6172 5547 739 328 92 35 chr1 26662190 26662435 -255531229 - L2 LINE L2 -249 3064 2779 284 275 56 63 chr1 26662425 26662567 -255531097 - MER5B DNA MER1_type -36 142 2 * 303 319 44 0 chr1 26662625 26662738 -255530926 + L1MC4 LINE L1 7924 8041 -1 187 319 0 0 chr1 26662750 26662797 -255530867 - MER5B DNA MER1_type -130 48 2 712 270 56 0 chr1 26663047 26663225 -255530439 - MER91A DNA MER1_type -1 195 8 264 247 200 12 chr1 26663240 26663325 -255530339 - L2 LINE L2 -1 3271 3171 2470 229 111 6 chr1 26663913 26664586 -255529078 + L1ME3A LINE L1 5417 6160 -10 22 94 0 0 chr1 26664587 26664651 -255529013 + AT_rich Low_complexity Low_complexity 1 64 0 1345 235 53 16 chr1 26665119 26665438 -255528226 + L1ME3A LINE L1 5518 5848 -322 446 312 118 16 chr1 26665864 26666050 -255527614 - MIR SINE MIR -25 237 33 253 189 108 40 chr1 26666327 26666401 -255527263 + MIR SINE MIR 72 150 -112 277 217 0 0 chr1 26666549 26666595 -255527069 - L2 LINE L2 -8 3264 3219 1733 172 0 25 chr1 26666723 26667037 -255526627 + AluJb SINE Alu 1 306 -6 397 279 11 15 chr1 26667610 26667803 -255525861 + MIR SINE MIR 1 262 0 475 256 15 23 chr1 26667828 26667961 -255525703 - MIR3 SINE MIR -62 146 15 1719 98 105 51 chr1 26668015 26668311 -255525353 - AluSx SINE Alu 0 312 1 227 284 28 78 chr1 26668983 26669124 -255524540 - L2 LINE L2 -86 3227 3094 862 191 12 0 chr1 26669334 26669502 -255524162 - FRAM SINE Alu -8 168 1 1983 163 20 8 chr1 26669854 26670211 -255523453 - L1MB8 LINE L1 0 6178 5818 254 306 81 6 chr1 26670661 26670821 -255522843 + Charlie7 DNA MER1_type 2435 2606 -6 782 158 0 8 chr1 26670847 26670980 -255522684 + AluJo SINE Alu 2 133 -169 1229 124 0 60 chr1 26671778 26671979 -255521685 + AluSx SINE Alu 1 189 -123 1987 127 3 0 chr1 26672060 26672371 -255521293 - AluSx SINE Alu 0 312 1 667 230 142 5 chr1 26672828 26673032 -255520632 - MIR SINE MIR -30 232 1 755 182 74 0 chr1 26673454 26673602 -255520062 + AluJo SINE Alu 136 294 -18 387 287 90 7 chr1 26674425 26674562 -255519102 + MIR SINE MIR 38 184 -61 441 236 176 6 chr1 26675404 26675569 -255518095 + L1MD3 LINE L1 7789 7981 -14 563 326 81 27 chr1 26676083 26676567 -255517097 + L1MC4a LINE L1 5376 5885 -1923 2342 80 0 0 chr1 26676569 26676868 -255516796 + AluSp SINE Alu 1 299 -14 2032 115 14 7 chr1 26676894 26677189 -255516475 + AluSq SINE Alu 1 297 -16 1883 218 37 70 chr1 26677194 26677254 -255516410 + L1ME2 LINE L1 5610 5670 -494 3113 58 0 5 chr1 26677254 26677631 -255516033 - THE1C LTR MaLR 0 375 1 1883 218 37 70 chr1 26677631 26677794 -255515870 + L1ME2 LINE L1 5670 5837 -327 2010 117 0 0 chr1 26677794 26678085 -255515579 + AluSx SINE Alu 1 291 -21 1883 218 37 70 chr1 26678085 26678125 -255515539 + L1ME2 LINE L1 5837 5877 -287 1586 81 2 229 chr1 26678125 26678522 -255515142 + AluSx SINE Alu 1 307 -5 1883 218 37 70 chr1 26678522 26678829 -255514835 + L1ME2 LINE L1 5877 6163 -1 185 250 0 11 chr1 26680664 26680752 -255512912 + (TATATG)n Simple_repeat Simple_repeat 2 88 0 355 231 15 15 chr1 26680948 26681045 -255512619 + MIR SINE MIR 17 115 -93 802 185 20 0 chr1 26681431 26681582 -255512082 + MER90 LTR ERV1 1 154 -421 29 0 0 0 chr1 26681610 26681639 -255512025 + AT_rich Low_complexity Low_complexity 1 29 0 2047 198 36 7 chr1 26681641 26682060 -255511604 + MER90 LTR ERV1 184 614 0 602 244 68 34 chr1 26682266 26682442 -255511222 + MIR SINE MIR 9 190 -72 445 249 169 80 chr1 26682472 26682491 -255511173 + MIR SINE MIR 17 33 -229 2285 66 0 44 chr1 26682491 26682808 -255510856 + AluY SINE Alu 1 303 -8 445 249 169 80 chr1 26682808 26683013 -255510651 + MIR SINE MIR 33 261 -1 590 229 33 8 chr1 26683057 26683179 -255510485 + FLAM_A SINE Alu 1 125 -8 1666 134 3 31 chr1 26683334 26683658 -255510006 + AluJb SINE Alu 1 316 0 558 265 22 43 chr1 26685617 26685802 -255507862 - MER5A DNA MER1_type -4 185 5 265 289 202 9 chr1 26686194 26686308 -255507356 - L2 LINE L2 -8 3264 3129 1807 137 10 26 chr1 26686601 26686908 -255506756 + AluJo SINE Alu 1 302 -10 978 162 0 0 chr1 26688338 26688486 -255505178 + MER3 DNA MER1_type 1 148 -61 700 179 113 67 chr1 26688580 26688602 -255505062 + MIR SINE MIR 14 34 -228 2173 87 3 35 chr1 26688602 26688914 -255504750 + AluSp SINE Alu 1 302 -11 700 179 113 67 chr1 26688914 26689086 -255504578 + MIR SINE MIR 34 217 -45 670 288 84 9 chr1 26689311 26689441 -255504223 - MIR SINE MIR -12 250 131 1715 151 3 51 chr1 26689441 26689752 -255503912 + AluJo SINE Alu 1 296 -16 670 288 84 9 chr1 26689752 26689847 -255503817 - MIR SINE MIR -131 131 8 2341 89 0 0 chr1 26690038 26690342 -255503322 + AluSc SINE Alu 1 304 -5 23 0 0 0 chr1 26690863 26690886 -255502778 + AT_rich Low_complexity Low_complexity 1 23 0 246 226 75 62 chr1 26691318 26691368 -255502296 - L1M LINE L1 -2391 5417 5369 2237 109 0 0 chr1 26691368 26691671 -255501993 - AluSq SINE Alu -10 303 1 246 226 75 62 chr1 26691671 26691766 -255501898 - L1M LINE L1 -2439 5369 5270 365 301 127 37 chr1 26692098 26692420 -255501244 - L1 LINE L1 -1116 5030 4680 200 279 154 39 chr1 26692644 26692748 -255500916 - MIR SINE MIR -70 138 23 711 270 80 26 chr1 26692772 26692998 -255500666 - MIR SINE MIR -7 255 18 28 29 0 0 chr1 26693029 26693064 -255500600 + AT_rich Low_complexity Low_complexity 1 35 0 2197 116 3 0 chr1 26693193 26693504 -255500160 - AluSq SINE Alu 0 313 2 1528 162 9 58 chr1 26693512 26693840 -255499824 - AluJb SINE Alu 0 312 1 418 139 63 0 chr1 26693868 26693947 -255499717 - LTR50 LTR ERVL -2 793 710 939 124 0 0 chr1 26693949 26694078 -255499586 + FLAM_C SINE Alu 1 129 -14 854 192 69 54 chr1 26694087 26694342 -255499322 - LTR50 LTR ERVL -89 706 445 2264 103 0 0 chr1 26694342 26694644 -255499020 + AluSx SINE Alu 1 302 -10 854 192 69 54 chr1 26694644 26694664 -255499000 - LTR50 LTR ERVL -350 445 427 2193 101 0 0 chr1 26694973 26695269 -255498395 + AluSx SINE Alu 1 296 -16 273 244 47 35 chr1 26695583 26695669 -255497995 + HAL1 LINE L1 811 897 -1610 1462 126 0 160 chr1 26695676 26696032 -255497632 + AluJb SINE Alu 1 299 -13 2125 94 3 0 chr1 26696122 26696409 -255497255 - AluSq SINE Alu -25 288 1 182 256 179 13 chr1 26696447 26696525 -255497139 - L2 LINE L2 -21 3251 3161 2275 156 54 20 chr1 26696711 26697153 -255496511 - MER45B DNA AcHobo -21 1019 563 450 95 0 0 chr1 26697153 26697216 -255496448 + FRAM/FAM SINE Alu 19 81 -95 951 162 16 22 chr1 26697216 26697401 -255496263 + AluJo SINE Alu 114 297 -15 1919 201 74 88 chr1 26697401 26697674 -255495990 - MER45B DNA AcHobo -465 575 300 2160 94 0 16 chr1 26697674 26697983 -255495681 + AluSx SINE Alu 1 304 -8 1689 131 0 32 chr1 26697984 26698267 -255495397 - AluSx SINE Alu -38 274 1 1919 201 74 88 chr1 26698267 26698574 -255495090 - MER45B DNA AcHobo -739 301 1 1818 131 0 0 chr1 26699002 26699270 -255494394 + AluSx SINE Alu 1 268 -44 1722 158 13 3 chr1 26699961 26700264 -255493400 + AluJo SINE Alu 1 306 -6 1264 158 87 38 chr1 26700332 26700597 -255493067 - AluJo SINE Alu -34 278 1 1820 26 9 22 chr1 26700786 26701016 -255492648 - L1PA6 LINE L1 0 6154 5928 649 220 119 37 chr1 26701115 26701333 -255492331 + MIR SINE MIR 21 256 -6 1911 89 3 56 chr1 26701339 26701667 -255491997 - AluSg SINE Alu 0 312 1 278 100 0 0 chr1 26701990 26702030 -255491634 + LTR50 LTR ERVL 2 41 -754 709 199 294 21 chr1 26702060 26702387 -255491277 + LTR50 LTR ERVL 15 430 -365 520 180 72 0 chr1 26702396 26702535 -255491129 - L1MB7 LINE L1 0 6184 6036 332 181 11 106 chr1 26702525 26702619 -255491045 + L1MB3 LINE L1 5471 5555 -616 * 1732 100 52 0 chr1 26702619 26702868 -255490796 + AluSg SINE Alu 43 304 -6 568 99 0 63 chr1 26702877 26703019 -255490645 + (GGAA)n Simple_repeat Simple_repeat 1 133 0 2353 158 18 87 chr1 26703019 26703076 -255490588 + L1MB3 LINE L1 5551 5610 -573 2053 108 10 0 chr1 26703076 26703371 -255490293 + AluSx SINE Alu 1 298 -14 2353 158 18 87 chr1 26703371 26703471 -255490193 + L1MB3 LINE L1 5610 5715 -468 2697 99 0 8 chr1 26703471 26703836 -255489828 - THE1B LTR MaLR -2 362 1 2353 158 18 87 chr1 26703836 26703993 -255489671 + L1MB3 LINE L1 5715 5881 -302 2313 64 0 10 chr1 26703993 26704289 -255489375 + AluY SINE Alu 1 293 -18 2353 158 18 87 chr1 26704289 26704554 -255489110 + L1MB3 LINE L1 5881 6069 -114 559 159 0 0 chr1 26704554 26704642 -255489022 + FRAM SINE Alu 73 160 -16 230 284 108 0 chr1 26704673 26704775 -255488889 - LTR50 LTR ERVL -119 676 564 518 163 0 0 chr1 26704775 26704873 -255488791 + L1MB3 LINE L1 6085 6182 -1 961 178 93 9 chr1 26704873 26705087 -255488577 - L1MB5 LINE L1 -139 6035 5804 290 200 17 0 chr1 26705092 26705152 -255488512 + LTR50 LTR ERVL 552 612 -183 1375 191 20 31 chr1 26705163 26705682 -255487982 + pTR5 LTR ERV1 772 1332 -1106 3223 151 86 74 chr1 26705698 26706374 -255487290 + LTR12 LTR ERV1 5 688 0 541 232 79 6 chr1 26706389 26706474 -255487190 + LTR50 LTR ERVL 619 696 -99 1427 203 24 24 chr1 26706474 26706772 -255486892 - AluJo SINE Alu -17 295 1 541 232 79 6 chr1 26706772 26706850 -255486814 + LTR50 LTR ERVL 696 794 -1 205 322 68 53 chr1 26707299 26707527 -255486137 - MIR SINE MIR 0 262 40 246 164 16 82 chr1 26707608 26707669 -255485995 + L1ME LINE L1 5534 5590 -531 1482 160 92 18 chr1 26707783 26707940 -255485724 - AluJb SINE Alu -9 303 159 333 0 0 0 chr1 26707940 26707977 -255485687 + (TG)n Simple_repeat Simple_repeat 2 38 0 1482 160 92 18 chr1 26707977 26708101 -255485563 - AluJb SINE Alu -153 159 1 1947 144 41 47 chr1 26708103 26708386 -255485278 + MER47A DNA MER2_type 6 288 -2035 2048 137 3 0 chr1 26708386 26708679 -255484985 + AluSx SINE Alu 1 294 -18 1947 144 41 47 chr1 26708679 26708757 -255484907 + MER47A DNA MER2_type 288 365 -1 1581 148 8 19 chr1 26708978 26709235 -255484429 - AluJb SINE Alu -35 277 24 1904 159 0 13 chr1 26709239 26709540 -255484124 - AluJb SINE Alu -15 297 1 757 264 90 13 chr1 26709820 26710130 -255483534 + L1ME4a LINE L1 5556 5889 -232 1800 123 11 73 chr1 26710220 26710281 -255483383 - MER4A LTR ERV1 -2 662 599 2502 64 0 3 chr1 26710281 26710577 -255483087 + AluY SINE Alu 1 295 -16 1800 123 11 73 chr1 26710577 26710881 -255482783 - MER4A LTR ERV1 -65 599 261 630 72 31 21 chr1 26710881 26710978 -255482686 - MER4A LTR ERV1 -566 98 1 369 272 39 56 chr1 26711450 26711630 -255482034 - L2 LINE L2 -17 3296 3120 775 201 129 68 chr1 26711665 26711928 -255481736 - MLT1J LTR MaLR -2 509 231 2437 107 0 0 chr1 26711932 26712242 -255481422 + AluSg SINE Alu 1 310 0 545 146 42 10 chr1 26712415 26712511 -255481153 + AluJo SINE Alu 36 134 -178 312 181 36 48 chr1 26712523 26712606 -255481058 - MIR SINE MIR -119 143 62 383 188 0 0 chr1 26712786 26712850 -255480814 + L2 LINE L2 3210 3273 -40 1880 188 58 52 chr1 26712867 26713204 -255480460 - L1ME2 LINE L1 -116 6048 5705 1931 129 24 3 chr1 26713204 26713498 -255480166 - AluSq SINE Alu -13 300 1 1880 188 58 52 chr1 26713498 26713677 -255479987 - L1ME2 LINE L1 -459 5705 5529 502 325 12 0 chr1 26714398 26714567 -255479097 + L2 LINE L2 2459 2629 -685 1310 268 63 35 chr1 26714683 26715145 -255478519 - LTR33 LTR ERVL -46 475 1 1118 283 86 8 chr1 26715145 26715425 -255478239 + MLT1K LTR MaLR 76 451 -137 2699 42 0 10 chr1 26715425 26715737 -255477927 + AluY SINE Alu 1 309 -2 1118 283 86 8 chr1 26715737 26715886 -255477778 + MLT1K LTR MaLR 451 587 -1 1948 141 40 13 chr1 26716237 26716541 -255477123 + AluJb SINE Alu 1 312 0 841 126 0 8 chr1 26717015 26717142 -255476522 - FLAM_A SINE Alu -10 132 7 241 240 0 0 chr1 26717497 26717547 -255476117 + GA-rich Low_complexity Low_complexity 3 52 0 255 133 0 0 chr1 26717550 26717595 -255476069 + (GGGGA)n Simple_repeat Simple_repeat 4 48 0 203 148 37 0 chr1 26718046 26718100 -255475564 + C-rich Low_complexity Low_complexity 5 60 0 225 0 0 0 chr1 26718473 26718498 -255475166 + (CGGGG)n Simple_repeat Simple_repeat 2 26 0 216 0 0 0 chr1 26718523 26718547 -255475117 + (A)n Simple_repeat Simple_repeat 1 24 0 1744 144 75 7 chr1 26719485 26719777 -255473887 - AluJb SINE Alu 0 312 1 1738 140 77 0 chr1 26720542 26720827 -255472837 - AluJb SINE Alu 0 312 6 24 32 0 0 chr1 26721137 26721168 -255472496 + AT_rich Low_complexity Low_complexity 1 31 0 379 210 49 12 chr1 26721511 26721592 -255472072 + AluJ/FRAM SINE Alu 219 302 0 1031 191 75 72 chr1 26721663 26722009 -255471655 + L1MC4 LINE L1 7696 8042 0 181 371 89 19 chr1 26722460 26722719 -255470945 + L2 LINE L2 2811 3087 -185 1786 87 35 131 chr1 26723108 26723452 -255470212 + AluSq SINE Alu 1 311 -2 13516 110 41 8 chr1 26723998 26724193 -255469471 - Tigger1 DNA MER2_type -10 2408 2221 1827 156 3 21 chr1 26724193 26724481 -255469183 + AluJb SINE Alu 6 288 -24 13516 110 41 8 chr1 26724481 26726323 -255467341 - Tigger1 DNA MER2_type -197 2221 304 2283 75 0 7 chr1 26726341 26726657 -255467007 + AluSc SINE Alu 1 314 0 1834 160 36 0 chr1 26726843 26727149 -255466515 - Tigger1 DNA MER2_type -2101 317 1 1999 111 4 0 chr1 26727411 26727672 -255465992 + AluSx SINE Alu 35 296 -16 2454 69 0 0 chr1 26728265 26728554 -255465110 + AluY SINE Alu 1 289 -22 687 136 7 130 chr1 26728576 26728693 -255464971 - AluJo SINE Alu -176 136 41 1935 120 42 11 chr1 26728693 26728976 -255464688 + AluSx SINE Alu 1 292 -20 687 136 7 130 chr1 26728976 26729012 -255464652 - AluJo SINE Alu -271 41 2 2187 123 0 0 chr1 26729996 26730296 -255463368 + AluSx SINE Alu 1 300 -12 286 194 108 43 chr1 26730327 26730420 -255463244 + MER5C DNA MER1_type 226 324 0 333 0 0 0 chr1 26730737 26730774 -255462890 + (TG)n Simple_repeat Simple_repeat 1 37 0 2384 98 0 0 chr1 26731172 26731477 -255462187 + AluSg SINE Alu 1 305 -5 843 141 0 0 chr1 26731492 26731620 -255462044 + FLAM_C SINE Alu 1 128 -5 2169 115 0 31 chr1 26732404 26732726 -255460938 - AluSx SINE Alu 0 312 1 848 142 0 16 chr1 26733020 26733147 -255460517 + FLAM_C SINE Alu 1 125 -8 918 128 0 0 chr1 26733352 26733477 -255460187 + FLAM_C SINE Alu 1 125 -18 1882 165 0 35 chr1 26733892 26734068 -255459596 - AluJb SINE Alu -8 304 123 239 0 32 0 chr1 26734068 26734099 -255459565 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1952 148 0 7 chr1 26734101 26734385 -255459279 - AluSx SINE Alu -30 282 1 1882 165 0 35 chr1 26734385 26734520 -255459144 - AluJb SINE Alu -190 122 1 959 128 0 0 chr1 26734528 26734661 -255459003 - FLAM_C SINE Alu 0 133 1 199 260 20 0 chr1 26735021 26735071 -255458593 + L2 LINE L2 3222 3272 0 2992 71 1 22 chr1 26735685 26736178 -255457486 + L1PA4 LINE L1 4461 6178 0 2073 209 25 9 chr1 26736178 26736624 -255457040 + L1 LINE L1 4550 5002 -1144 630 142 9 9 chr1 26736624 26736730 -255456934 + FLAM_A SINE Alu 32 137 -5 256 136 0 0 chr1 26736732 26736776 -255456888 + L1P LINE L1 5002 5045 -1101 2309 118 0 0 chr1 26736875 26737179 -255456485 + AluSx SINE Alu 1 304 -8 983 159 72 0 chr1 26737191 26737398 -255456266 + L1MB4 LINE L1 5958 6179 -1 235 238 16 0 chr1 26737443 26737506 -255456158 + (CATATA)n Simple_repeat Simple_repeat 2 65 0 422 305 67 49 chr1 26737684 26738028 -255455636 + LTR16C LTR ERVL 142 491 0 439 154 13 0 chr1 26738275 26738353 -255455311 - MER116 DNA Mariner -1 79 1 2201 81 0 4 chr1 26738377 26738648 -255455016 - AluSx SINE Alu -16 296 27 458 279 95 0 chr1 26738650 26738808 -255454856 + L1M4 LINE L1 4195 4367 -1779 189 213 0 0 chr1 26738834 26738881 -255454783 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 351 0 0 0 chr1 26738913 26738952 -255454712 + (CA)n Simple_repeat Simple_repeat 2 40 0 648 153 0 0 chr1 26738958 26739056 -255454608 - AluSg/x SINE Alu -19 290 193 21 26 0 26 chr1 26739234 26739253 -255454411 + AT_rich Low_complexity Low_complexity 1 19 -19 1992 96 0 15 chr1 26739253 26739525 -255454139 + AluSx SINE Alu 1 268 -44 21 26 0 26 chr1 26739525 26739544 -255454120 + AT_rich Low_complexity Low_complexity 19 38 0 950 117 0 0 chr1 26740128 26740265 -255453399 - AluSg/x SINE Alu -1 311 175 1342 179 0 0 chr1 26741419 26741631 -255452033 - AluJo SINE Alu -30 282 71 1614 131 112 0 chr1 26742353 26742612 -255451052 - AluSg SINE Alu -22 288 1 1200 272 69 60 chr1 26743570 26744434 -255449230 + L1MEc LINE L1 2153 3003 -3212 817 143 14 14 chr1 26744440 26744580 -255449084 + AluJo SINE Alu 6 145 -167 1498 148 54 40 chr1 26744580 26744858 -255448806 + AluJo SINE Alu 1 282 -30 2376 100 0 0 chr1 26744860 26745160 -255448504 - AluSx SINE Alu -12 300 1 24 0 0 0 chr1 26745163 26745187 -255448477 + AT_rich Low_complexity Low_complexity 1 24 0 664 171 120 0 chr1 26745207 26745324 -255448340 + FLAM_A SINE Alu 1 131 -2 1899 172 0 10 chr1 26745381 26745689 -255447975 + AluJb SINE Alu 2 306 -6 2092 119 4 0 chr1 26746048 26746326 -255447338 + AluSx SINE Alu 11 289 -23 574 193 140 53 chr1 26746945 26747116 -255446548 + MER105 DNA DNA 1 186 -18 2228 116 0 0 chr1 26747514 26747836 -255445828 - AluSx SINE Alu 0 322 1 327 327 27 0 chr1 26747849 26747959 -255445705 - L2 LINE L2 -5 3267 3155 2424 80 10 13 chr1 26747976 26748288 -255445376 + AluY SINE Alu 1 311 0 519 260 41 46 chr1 26748636 26748827 -255444837 + MIR SINE MIR 2 192 -66 2130 135 3 3 chr1 26748827 26749130 -255444534 + AluSx SINE Alu 1 303 -9 2435 69 0 16 chr1 26749630 26749936 -255443728 + AluY SINE Alu 1 301 -10 1427 98 0 0 chr1 26749936 26750119 -255443545 + AluSc SINE Alu 108 290 -19 27 73 0 0 chr1 26752664 26752719 -255440945 + AT_rich Low_complexity Low_complexity 1 55 0 2171 92 10 10 chr1 26752926 26753219 -255440445 + AluSp SINE Alu 1 293 -20 2235 58 0 38 chr1 26753690 26754024 -255439640 - AluY SINE Alu 0 323 1 849 165 0 0 chr1 26754127 26754254 -255439410 + FLAM_A SINE Alu 1 127 -6 244 235 15 15 chr1 26754337 26754405 -255439259 - MIR3 SINE MIR -22 186 119 231 241 52 0 chr1 26756968 26757026 -255436638 - MIR SINE MIR -109 99 39 1731 159 69 0 chr1 26757111 26757387 -255436277 - AluJb SINE Alu -17 295 1 2230 117 3 0 chr1 26757652 26757943 -255435721 - AluSx SINE Alu -20 292 1 391 319 91 13 chr1 26758325 26758566 -255435098 + L1ME LINE L1 4980 5201 -965 2662 173 22 85 chr1 26758566 26758666 -255434998 - MER41C LTR ERV1 0 554 449 2379 88 7 3 chr1 26758666 26758974 -255434690 - AluSp SINE Alu -4 309 1 2662 173 22 85 chr1 26758974 26759010 -255434654 - MER41C LTR ERV1 -105 449 412 2396 117 0 0 chr1 26759010 26759319 -255434345 + AluSx SINE Alu 1 309 -3 2662 173 22 85 chr1 26759319 26759772 -255433892 - MER41C LTR ERV1 -142 412 1 391 319 91 13 chr1 26759772 26760148 -255433516 + L1ME LINE L1 5201 5638 -528 1639 185 145 17 chr1 26761356 26761524 -255432140 - MLT1F LTR MaLR 0 542 397 2452 187 72 112 chr1 26761524 26762134 -255431530 + LTR1B LTR ERV1 1 570 -256 2416 68 0 0 chr1 26762134 26762444 -255431220 + AluSc SINE Alu 1 310 0 2452 187 72 112 chr1 26762444 26762692 -255430972 + LTR1B LTR ERV1 570 826 0 1639 185 145 17 chr1 26762692 26762944 -255430720 - MLT1F LTR MaLR -145 397 68 264 242 132 11 chr1 26763132 26763223 -255430441 - MLT1K LTR MaLR -278 310 209 2271 113 0 10 chr1 26763825 26764126 -255429538 + AluSx SINE Alu 4 301 -11 206 257 14 54 chr1 26764307 26764381 -255429283 + L2 LINE L2 3197 3267 -5 2189 139 3 0 chr1 26764604 26764906 -255428758 - AluSx SINE Alu -9 303 1 1385 185 42 8 chr1 26765154 26765414 -255428250 + MER66B LTR ERV1 1 269 -217 315 70 0 0 chr1 26765414 26765457 -255428207 + Alu SINE Alu 1 43 -260 452 292 48 30 chr1 26765504 26765672 -255427992 - MER5B DNA MER1_type 0 178 8 2129 130 0 0 chr1 26765877 26766176 -255427488 - AluSx SINE Alu -13 299 1 511 258 145 32 chr1 26766250 26766307 -255427357 + L2 LINE L2 3107 3156 -157 1962 163 0 0 chr1 26766307 26766607 -255427057 - AluJb SINE Alu -12 300 1 511 258 145 32 chr1 26766607 26766735 -255426929 + L2 LINE L2 3156 3313 0 448 266 89 0 chr1 26766734 26766858 -255426806 - MIR3 SINE MIR -69 139 5 * 353 239 33 0 chr1 26767195 26767287 -255426377 - MIR3 SINE MIR -24 184 90 228 67 0 0 chr1 26767610 26767640 -255426024 + (TCTCCC)n Simple_repeat Simple_repeat 3 32 0 2032 95 0 53 chr1 26768018 26768303 -255425361 - AluSx SINE Alu -15 297 28 1654 188 3 13 chr1 26768441 26768755 -255424909 - AluJb SINE Alu -1 311 1 276 287 124 74 chr1 26768780 26769322 -255424342 + L2 LINE L2 2737 3309 -4 369 223 173 22 chr1 26769640 26769779 -255423885 - MIR SINE MIR -52 210 51 850 182 6 6 chr1 26770098 26770257 -255423407 + FRAM SINE Alu 1 158 -18 1779 135 35 61 chr1 26770259 26770570 -255423094 + AluSx SINE Alu 1 303 -9 301 338 133 0 chr1 26770721 26770872 -255422792 + MIR3 SINE MIR 37 207 -1 243 284 0 30 chr1 26770855 26770922 -255422742 - L2 LINE L2 -9 3304 3240 * 207 183 0 56 chr1 26771344 26771415 -255422249 + G-rich Low_complexity Low_complexity 3 69 0 364 315 28 0 chr1 26772153 26772261 -255421403 + L2 LINE L2 3158 3268 -4 243 165 16 0 chr1 26773686 26773742 -255419922 + MIR SINE MIR 96 135 -73 2690 46 0 0 chr1 26773771 26774078 -255419586 + AluY SINE Alu 1 307 -4 206 175 25 0 chr1 26774166 26774206 -255419458 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 1648 139 12 8 chr1 26774400 26774652 -255419012 + AluJo SINE Alu 46 298 -14 863 202 121 24 chr1 26774864 26774945 -255418719 + ORSL DNA AcHobo 3 75 -200 2145 106 0 45 chr1 26774945 26775257 -255418407 + AluSq SINE Alu 3 300 -13 863 202 121 24 chr1 26775257 26775423 -255418241 + ORSL DNA AcHobo 75 274 -1 2293 103 3 3 chr1 26775521 26775822 -255417842 + AluSx SINE Alu 1 301 -11 632 258 30 6 chr1 26776126 26776293 -255417371 - MIR SINE MIR 0 262 92 388 310 101 16 chr1 26776315 26776444 -255417220 + L2 LINE L2 3133 3272 0 323 293 138 22 chr1 26776887 26777068 -255416596 + HAL1 LINE L1 841 1042 -1465 2417 89 3 3 chr1 26777129 26777442 -255416222 + AluSp SINE Alu 1 313 0 301 350 0 26 chr1 26777906 26778023 -255415641 + L1ME LINE L1 825 938 -5132 431 287 91 48 chr1 26778037 26778117 -255415547 + HAL1b LINE L1 368 443 -905 2373 102 0 13 chr1 26778117 26778432 -255415232 + AluSx SINE Alu 1 311 -1 431 287 91 48 chr1 26778432 26778913 -255414751 + HAL1b LINE L1 443 616 -732 660 218 65 0 chr1 26779289 26779459 -255414205 - MER113 DNA MER1_type? -195 326 146 423 0 0 0 chr1 26779462 26779509 -255414155 + (TG)n Simple_repeat Simple_repeat 2 48 0 1870 128 14 31 chr1 26779509 26779704 -255413960 - AluJb SINE Alu -27 285 95 2240 141 11 16 chr1 26779704 26780080 -255413584 + THE1C LTR MaLR 1 374 -1 1870 128 14 31 chr1 26780080 26780174 -255413490 - AluJb SINE Alu -217 95 1 692 229 18 6 chr1 26780174 26780340 -255413324 - MLT1G1 LTR MaLR -423 172 5 247 379 71 14 chr1 26781061 26781201 -255412463 - L2 LINE L2 -3 3269 3122 183 273 45 34 chr1 26781324 26781412 -255412252 - MIR SINE MIR -6 256 168 309 250 190 0 chr1 26781523 26781623 -255412041 - MIR SINE MIR -123 139 21 609 262 23 35 chr1 26782416 26782588 -255411076 - MIR SINE MIR -13 249 80 881 142 0 8 chr1 26782681 26782815 -255410849 - FLAM_A SINE Alu 0 133 1 228 35 0 0 chr1 26782901 26782930 -255410734 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 1875 109 74 0 chr1 26782930 26783187 -255410477 - AluSx SINE Alu -36 276 1 908 178 47 138 chr1 26783439 26783715 -255409949 + MIR SINE MIR 2 252 -10 466 238 114 0 chr1 26783743 26783848 -255409816 + MIR SINE MIR 24 140 -122 1200 194 28 35 chr1 26783850 26784139 -255409525 - AluJo SINE Alu -11 291 5 2399 73 10 13 chr1 26835852 26836152 -255357512 + AluSx SINE Alu 1 299 -13 242 220 150 10 chr1 26836353 26836453 -255357211 + L1ME4a LINE L1 6004 6117 -4 2082 124 3 3 chr1 26836468 26836759 -255356905 + AluSx SINE Alu 5 295 -17 211 294 0 0 chr1 26836769 26836820 -255356844 - MIR SINE MIR -77 131 81 483 267 38 35 chr1 26836914 26837155 -255356509 - MIR SINE MIR -18 244 6 629 155 10 0 chr1 26837505 26837608 -255356056 + AluJb SINE Alu 9 112 -200 313 177 56 5 chr1 26837711 26837874 -255355790 + L1MB8 LINE L1 5884 6130 -48 1063 229 175 23 chr1 26837984 26838465 -255355199 + L1MD3 LINE L1 7429 7982 -13 192 40 0 0 chr1 26838638 26838663 -255355001 + (T)n Simple_repeat Simple_repeat 1 25 0 428 357 0 27 chr1 26838717 26838902 -255354762 + CT-rich Low_complexity Low_complexity 1 180 0 206 262 24 24 chr1 26838879 26838963 -255354701 + (TCTCTG)n Simple_repeat Simple_repeat 3 86 0 * 323 286 23 15 chr1 26839012 26839145 -255354519 + CT-rich Low_complexity Low_complexity 1 134 0 2136 133 3 3 chr1 26839409 26839703 -255353961 - AluJb SINE Alu -13 299 6 2605 65 0 3 chr1 26839769 26840075 -255353589 - AluSc SINE Alu 0 309 5 2038 147 59 7 chr1 26840379 26840565 -255353099 + L1M4 LINE L1 5378 5553 -631 2461 75 3 10 chr1 26840565 26840873 -255352791 + AluSq SINE Alu 1 306 -7 2038 147 59 7 chr1 26840873 26841093 -255352571 + L1M4 LINE L1 5553 5805 -379 363 211 57 68 chr1 26841101 26841150 -255352514 + AluJb SINE Alu 1 49 -253 3581 134 72 7 chr1 26841150 26841746 -255351918 - MER41B LTR ERV1 0 635 1 363 211 57 68 chr1 26841746 26841855 -255351809 + AluJb SINE Alu 49 143 -159 442 199 76 88 chr1 26842073 26842244 -255351420 - MIR SINE MIR -54 208 40 1568 165 4 8 chr1 26842322 26842576 -255351088 - AluJb SINE Alu -59 253 1 191 267 44 78 chr1 26842635 26842725 -255350939 - L2 LINE L2 0 3313 3227 290 357 115 29 chr1 26842847 26843091 -255350573 - L2 LINE L2 -341 2973 2709 1074 81 15 0 chr1 26843269 26843405 -255350259 + AluSq/x SINE Alu 1 138 -174 2457 75 0 22 chr1 26843405 26843723 -255349941 + AluY SINE Alu 1 311 0 1860 178 0 10 chr1 26843733 26844036 -255349628 + AluJb SINE Alu 1 300 -12 198 0 0 0 chr1 26844450 26844472 -255349192 + (TA)n Simple_repeat Simple_repeat 2 23 0 2598 34 10 0 chr1 26844472 26844768 -255348896 - AluY SINE Alu -11 300 2 238 241 35 0 chr1 26844772 26844830 -255348834 - L2 LINE L2 -8 3305 3246 298 300 179 14 chr1 26844957 26845097 -255348567 - MER5A DNA MER1_type -9 180 18 2332 92 3 0 chr1 26846001 26846294 -255347370 + AluSx SINE Alu 1 294 -18 1653 257 58 19 chr1 26846801 26847264 -255346400 + L2 LINE L2 2826 3306 -7 2505 74 0 3 chr1 26847264 26847563 -255346101 + AluSp SINE Alu 1 298 -15 608 192 75 34 chr1 26847806 26847952 -255345712 + MIR SINE MIR 8 159 -103 251 205 205 110 chr1 26847953 26848080 -255345584 + MIR SINE MIR 124 262 0 378 220 247 40 chr1 26848193 26848206 -255345458 - MIR SINE MIR -61 201 192 2377 113 0 0 chr1 26848206 26848516 -255345148 - AluSx SINE Alu -2 310 1 378 220 247 40 chr1 26848516 26848652 -255345012 - MIR SINE MIR -70 192 21 2216 105 0 3 chr1 26849135 26849439 -255344225 + AluSg SINE Alu 1 303 -7 2247 100 3 0 chr1 26849726 26850017 -255343647 - AluSp SINE Alu -21 292 1 2157 109 7 7 chr1 26850080 26850374 -255343290 - AluSq SINE Alu -19 294 1 839 198 0 19 chr1 26850386 26850543 -255343121 - AluJb SINE Alu -13 299 146 989 97 131 11 chr1 26850708 26850883 -255342781 + pTR5 LTR ERV1 1830 2025 -413 280 258 31 21 chr1 26850884 26850981 -255342683 + LTR30 LTR ERV1 545 642 -80 2166 122 0 27 chr1 26850981 26851317 -255342347 + pTR5 LTR ERV1 66 392 -2046 299 120 84 30 chr1 26851317 26851349 -255342315 - Alu SINE Alu -13 289 290 2183 111 3 3 chr1 26851349 26851646 -255342018 - AluSx SINE Alu -15 297 1 299 120 84 30 chr1 26851646 26851699 -255341965 - Alu SINE Alu -11 291 242 262 241 0 17 chr1 26851710 26851760 -255341904 + MIR SINE MIR 196 246 -16 2091 147 3 3 chr1 26851760 26852072 -255341592 - AluJb SINE Alu 0 312 1 511 180 0 0 chr1 26852151 26852240 -255341424 - AluSp/q SINE Alu -12 301 213 1501 151 10 62 chr1 26852348 26852499 -255341165 - AluJo SINE Alu -36 276 146 1696 146 73 7 chr1 26852499 26852773 -255340891 - AluJb SINE Alu -19 293 2 1501 151 10 62 chr1 26852773 26852912 -255340752 - AluJo SINE Alu -166 146 1 1967 144 26 7 chr1 26853341 26853647 -255340017 - AluSx SINE Alu 0 312 1 1924 121 39 16 chr1 26853788 26854093 -255339571 + AluSx SINE Alu 1 312 0 330 330 17 9 chr1 26854154 26854269 -255339395 - MIR SINE MIR -63 145 30 1847 111 57 0 chr1 26854638 26854918 -255338746 - AluSx SINE Alu -16 296 1 285 265 20 20 chr1 26854956 26855054 -255338610 - L1M4 LINE L1 -2098 4048 3951 2334 71 0 10 chr1 26855117 26855425 -255338239 - AluSc SINE Alu -4 305 1 973 257 46 7 chr1 26855430 26855733 -255337931 - L1MEc LINE L1 -4628 1768 1454 2328 73 0 16 chr1 26855734 26856047 -255337617 - AluY SINE Alu -3 308 1 628 76 0 0 chr1 26856047 26856126 -255337538 - Alu SINE Alu -11 300 222 1021 119 0 6 chr1 26856128 26856288 -255337376 + AluSg/x SINE Alu 136 294 -18 1158 155 31 10 chr1 26856288 26856482 -255337182 + MER1B DNA MER1_type 142 339 0 278 227 106 61 chr1 26856822 26856954 -255336710 + MLT1K LTR MaLR 279 416 -172 869 165 76 76 chr1 26856976 26857213 -255336451 + AluJb SINE Alu 1 237 -75 1567 255 186 54 chr1 26857418 26858201 -255335463 - L2 LINE L2 -194 3078 2102 1483 175 17 24 chr1 26858201 26858498 -255335166 + AluJo SINE Alu 1 295 -17 1567 255 186 54 chr1 26858498 26858930 -255334734 - L2 LINE L2 -1170 2102 1728 2072 120 23 0 chr1 26859354 26859654 -255334010 + AluSx SINE Alu 1 307 -5 350 326 48 20 chr1 26859958 26860105 -255333559 + L2 LINE L2 3163 3313 0 1637 134 43 0 chr1 26860231 26860485 -255333179 - AluSx SINE Alu -47 265 1 995 146 0 0 chr1 26860488 26860639 -255333025 - FRAM SINE Alu -18 158 8 722 251 99 0 chr1 26860639 26860830 -255332834 - MIR SINE MIR -38 224 15 2261 97 0 0 chr1 26860961 26861260 -255332404 + AluSg SINE Alu 1 299 -11 2236 109 0 0 chr1 26861268 26861572 -255332092 + AluSp SINE Alu 1 304 -9 1171 103 6 0 chr1 26861572 26861737 -255331927 + AluSq SINE Alu 134 299 -14 2088 140 0 0 chr1 26861825 26862133 -255331531 + AluJo SINE Alu 3 310 -2 212 299 65 65 chr1 26862150 26862304 -255331360 + L2 LINE L2 2332 2485 -829 31 0 0 0 chr1 26863063 26863094 -255330570 + AT_rich Low_complexity Low_complexity 1 31 0 874 169 36 46 chr1 26864279 26864474 -255329190 + AluJb SINE Alu 102 294 -18 548 257 95 11 chr1 26864831 26865010 -255328654 + MIR SINE MIR 52 245 -17 761 164 132 20 chr1 26865184 26865336 -255328328 - AluJb SINE Alu -4 308 140 1803 151 0 3 chr1 26865486 26865799 -255327865 - AluSx SINE Alu 0 312 1 340 75 0 38 chr1 26865799 26865852 -255327812 + MER4A LTR ERV1 308 358 -306 2096 98 19 41 chr1 26865888 26866205 -255327459 + MER4A LTR ERV1 355 664 0 347 187 133 0 chr1 26866302 26866377 -255327287 - LTR24 LTR ERV1 0 467 383 * 2019 139 18 54 chr1 26866354 26866507 -255327157 - LTR23 LTR ERV1 -62 375 218 1993 125 24 0 chr1 26866507 26866803 -255326861 + AluSx SINE Alu 1 303 -9 2023 100 17 3 chr1 26866807 26867096 -255326568 + AluSg SINE Alu 1 293 -17 2019 139 18 54 chr1 26867096 26867324 -255326340 - LTR23 LTR ERV1 -222 215 3 1300 94 0 0 chr1 26867740 26867910 -255325754 + AluSg/x SINE Alu 133 302 -10 258 237 34 0 chr1 26869359 26869418 -255324246 - MIR3 SINE MIR -10 198 138 2257 92 0 3 chr1 26869694 26869999 -255323665 - AluSx SINE Alu -8 304 1 842 121 23 0 chr1 26870000 26870132 -255323532 - AluJb SINE Alu -177 135 1 702 296 96 70 chr1 26870323 26870484 -255323180 - MLT1K LTR MaLR -129 459 304 2002 113 0 10 chr1 26870484 26870785 -255322879 - AluSx SINE Alu -14 298 1 702 296 96 70 chr1 26870785 26871069 -255322595 - MLT1K LTR MaLR -284 304 2 429 314 0 8 chr1 26872199 26872315 -255321349 - MIR SINE MIR -5 257 143 543 271 39 13 chr1 26872315 26872470 -255321194 + MER91A DNA MER1_type 1 159 -37 210 305 163 21 chr1 26872444 26872585 -255321079 - MIR SINE MIR -93 169 9 * 323 296 183 14 chr1 26872659 26872801 -255320863 + MIR3 SINE MIR 3 168 -40 248 216 128 88 chr1 26873156 26873281 -255320383 + MIR3 SINE MIR 55 184 -24 339 210 29 19 chr1 26873712 26873817 -255319847 + MIR SINE MIR 94 201 -56 454 250 27 9 chr1 26873862 26873974 -255319690 + L2 LINE L2 3190 3303 -10 1297 82 17 82 chr1 26873974 26874114 -255319550 + AluSx SINE Alu 1 122 -190 2026 86 14 3 chr1 26874114 26874404 -255319260 + AluSg SINE Alu 1 293 -17 1297 82 17 82 chr1 26874404 26874495 -255319169 + AluSx SINE Alu 122 217 -95 1422 158 27 27 chr1 26874697 26874956 -255318708 + AluJo SINE Alu 1 259 -53 1752 175 3 0 chr1 26875087 26875384 -255318280 + AluSx SINE Alu 1 298 -14 908 78 0 0 chr1 26875696 26875812 -255317852 - AluSg/x SINE Alu -64 248 133 2026 101 10 3 chr1 26875818 26876106 -255317558 - AluSg SINE Alu -20 290 1 1974 141 3 0 chr1 26876108 26876413 -255317251 - AluSx SINE Alu -5 307 2 325 305 116 42 chr1 26876419 26876825 -255316839 - MLT1L LTR MaLR -70 545 110 1116 310 56 5 chr1 26877265 26877655 -255316009 + L2 LINE L2 1912 2321 -993 1220 163 4 9 chr1 26877655 26877882 -255315782 - AluJb SINE Alu 0 312 87 761 248 87 0 chr1 26877882 26878088 -255315576 + L2 LINE L2 2309 2532 -782 295 291 60 0 chr1 26878090 26878207 -255315457 - L1M4 LINE L1 -917 5229 5106 1963 141 0 3 chr1 26878220 26878519 -255315145 + AluSx SINE Alu 1 298 -14 243 0 0 0 chr1 26878519 26878546 -255315118 + (TA)n Simple_repeat Simple_repeat 2 28 0 1077 262 78 42 chr1 26878605 26879106 -255314558 + L2 LINE L2 2556 3068 -245 1830 138 7 3 chr1 26879171 26879462 -255314202 + AluSc SINE Alu 1 292 -17 234 88 0 0 chr1 26879472 26879506 -255314158 - L1M1 LINE L1 -4701 2864 2831 2198 100 0 0 chr1 26879511 26879810 -255313854 + AluY SINE Alu 1 299 -12 274 134 23 0 chr1 26879955 26880009 -255313655 - Alu SINE Alu -249 53 11 4974 145 29 36 chr1 26880029 26880489 -255313175 - L1MB7 LINE L1 -5 6179 5717 2077 104 0 45 chr1 26880489 26880798 -255312866 + AluSx SINE Alu 1 295 -17 4974 145 29 36 chr1 26880798 26881366 -255312298 - L1MB7 LINE L1 -467 5717 5159 247 54 0 0 chr1 26881368 26881432 -255312232 - Alu SINE Alu 0 324 261 749 154 69 8 chr1 26881534 26881664 -255312000 + FRAM SINE Alu 22 159 -17 2170 108 0 0 chr1 26881667 26881963 -255311701 + AluSx SINE Alu 1 296 -16 1281 224 33 15 chr1 26881963 26882293 -255311371 - L1ME1 LINE L1 -139 6027 5692 2156 116 0 0 chr1 26882309 26882603 -255311061 - AluSx SINE Alu -16 296 3 394 297 39 28 chr1 26882784 26882966 -255310698 - MIR SINE MIR -65 197 14 2109 97 3 3 chr1 26883203 26883502 -255310162 - AluSg SINE Alu -11 299 1 247 246 58 0 chr1 26883560 26883629 -255310035 - MIR SINE MIR -83 179 107 317 281 79 50 chr1 26883629 26883868 -255309796 - MLT1L LTR MaLR -4 605 363 336 240 160 10 chr1 26883955 26884055 -255309609 - MLT1L LTR MaLR -375 240 126 874 206 0 0 chr1 26884113 26884283 -255309381 + FRAM SINE Alu 1 170 -6 2136 92 10 7 chr1 26884284 26884588 -255309076 + AluSx SINE Alu 5 309 -3 2192 68 3 20 chr1 26884591 26884887 -255308777 + AluY SINE Alu 6 296 -15 900 303 66 5 chr1 26884888 26885268 -255308396 + L1ME3A LINE L1 5549 5951 -219 1528 151 3 80 chr1 26885478 26885789 -255307875 + AluJo SINE Alu 12 298 -14 856 169 124 10 chr1 26885873 26886074 -255307590 - AluJo SINE Alu -18 294 71 1832 136 7 19 chr1 26886208 26886516 -255307148 - AluJb SINE Alu -8 304 1 322 299 160 0 chr1 26886936 26887080 -255306584 + MIR SINE MIR 89 255 -7 618 177 41 34 chr1 26887122 26887269 -255306395 + MIR3 SINE MIR 15 162 -46 2050 96 14 3 chr1 26887323 26887614 -255306050 + AluSx SINE Alu 1 294 -18 232 174 145 29 chr1 26887656 26887679 -255305985 - MER103 DNA DNA -71 95 76 923 202 56 0 chr1 26887679 26887877 -255305787 - MER3 DNA MER1_type 0 209 1 232 174 145 29 chr1 26887877 26887922 -255305742 - MER103 DNA DNA -90 76 19 216 67 0 0 chr1 26887926 26887956 -255305708 + (TG)n Simple_repeat Simple_repeat 1 30 0 1739 129 3 31 chr1 26887958 26888245 -255305419 - AluJo SINE Alu -33 279 1 1127 161 0 27 chr1 26888376 26888600 -255305064 + AluSg SINE Alu 1 218 -92 239 119 0 0 chr1 26888755 26888797 -255304867 + Alu SINE Alu 260 301 -2 892 151 0 76 chr1 26889204 26889376 -255304288 - AluJo SINE Alu -151 161 3 222 37 0 0 chr1 26889384 26889411 -255304253 + (TTCC)n Simple_repeat Simple_repeat 4 30 0 1611 160 32 7 chr1 26889430 26889712 -255303952 - AluSq SINE Alu -20 293 5 1573 127 8 4 chr1 26890132 26890377 -255303287 - AluJb SINE Alu -25 287 42 534 211 0 8 chr1 26890382 26890505 -255303159 - L1MC4 LINE L1 -1 8041 7920 260 304 9 0 chr1 26890511 26890626 -255303038 + (TA)n Simple_repeat Simple_repeat 1 116 0 1913 115 3 33 chr1 26890627 26890931 -255302733 - AluSx SINE Alu -17 295 1 2218 106 3 0 chr1 26890938 26891250 -255302414 - AluSq SINE Alu 0 313 1 743 185 0 0 chr1 26891272 26891391 -255302273 - FLAM_A SINE Alu -14 119 1 2333 97 0 0 chr1 26891431 26891742 -255301922 - AluSx SINE Alu -1 311 1 2197 95 3 0 chr1 26891755 26892049 -255301615 - AluSx SINE Alu -17 295 1 774 279 48 17 chr1 26892359 26892649 -255301015 + L1MC4 LINE L1 7251 7549 -493 957 146 6 12 chr1 26892794 26892958 -255300706 - AluSx SINE Alu -143 169 7 908 113 0 0 chr1 26893092 26893216 -255300448 + FLAM_C SINE Alu 1 124 -19 1243 157 36 39 chr1 26893433 26893739 -255299925 - AluJb SINE Alu -2 310 6 207 238 191 19 chr1 26894511 26894616 -255299048 + L2 LINE L2 94 216 -3098 555 182 0 0 chr1 26895588 26895676 -255297988 + FRAM/FAM SINE Alu 1 87 -89 952 292 79 23 chr1 26895803 26896197 -255297467 + L2 LINE L2 2377 2792 -522 1102 230 28 50 chr1 26896197 26896514 -255297150 + MLT1A1 LTR MaLR 1 310 -55 2217 111 0 9 chr1 26896536 26896852 -255296812 - AluSp SINE Alu 0 313 1 978 168 0 5 chr1 26896852 26897042 -255296622 - L1M4 LINE L1 -978 5168 4980 1693 179 31 70 chr1 26897076 26897396 -255296268 - L1M4 LINE L1 -1153 4993 4691 2018 123 27 0 chr1 26897396 26897697 -255295967 + AluSq SINE Alu 1 309 -4 1693 179 31 70 chr1 26897697 26897789 -255295875 - L1M4 LINE L1 -1455 4691 4597 483 249 216 22 chr1 26898038 26898307 -255295357 + L2 LINE L2 2181 2501 -813 213 225 100 0 chr1 26898476 26898556 -255295108 + L2 LINE L2 3021 3108 -205 1539 181 10 16 chr1 26898556 26898860 -255294804 - AluJb SINE Alu -10 302 1 503 144 0 144 chr1 26898868 26899000 -255294664 - AluJb SINE Alu 0 312 200 333 253 152 0 chr1 26899185 26899284 -255294380 + L3 LINE CR1 1406 1519 -58 364 235 229 20 chr1 26899782 26899935 -255293729 - MIR SINE MIR -6 256 72 253 241 35 58 chr1 26900111 26900198 -255293466 - MIR SINE MIR -70 192 108 959 117 14 7 chr1 26900203 26900348 -255293316 + AluSq/x SINE Alu 1 146 -167 458 256 30 15 chr1 26900483 26900616 -255293048 - LTR37B LTR ERV1 -333 135 1 2057 132 0 0 chr1 26900711 26901014 -255292650 - AluSx SINE Alu -9 303 1 261 216 0 0 chr1 26901077 26901128 -255292536 - MIR SINE MIR -32 230 180 1526 136 0 24 chr1 26901277 26901528 -255292136 + AluSx SINE Alu 2 246 -66 216 195 24 0 chr1 26901895 26901936 -255291728 + (CAT)n Simple_repeat Simple_repeat 2 43 0 1036 154 0 0 chr1 26902005 26902167 -255291497 - AluSg/x SINE Alu -17 293 132 1972 148 0 7 chr1 26902167 26902477 -255291187 - AluSx SINE Alu -4 308 1 1359 96 38 96 chr1 26902607 26902846 -255290818 + MER30 DNA MER1_type 6 230 0 401 232 384 0 chr1 26902849 26903013 -255290651 + MIR SINE MIR 12 238 -24 287 259 65 9 chr1 26903623 26903731 -255289933 - L1ME4a LINE L1 0 6121 6008 926 151 60 0 chr1 26903756 26903909 -255289755 - AluSg/x SINE Alu -16 296 131 2052 122 3 7 chr1 26903909 26904205 -255289459 - AluSx SINE Alu -17 295 1 926 151 60 0 chr1 26904205 26904217 -255289447 - AluSg/x SINE Alu -181 131 121 189 0 0 0 chr1 26904246 26904267 -255289397 + (TTTTTA)n Simple_repeat Simple_repeat 2 22 0 22 0 0 0 chr1 26904294 26904316 -255289348 + AT_rich Low_complexity Low_complexity 1 22 0 1019 159 26 46 chr1 26905113 26905308 -255288356 + AluJb SINE Alu 1 191 -121 276 294 129 35 chr1 26906611 26906781 -255286883 - MIR SINE MIR -12 250 65 933 187 0 0 chr1 26907952 26908102 -255285562 - AluJb SINE Alu -26 286 137 526 240 129 12 chr1 26908217 26908388 -255285276 + MIR SINE MIR 48 238 -24 375 234 90 28 chr1 26908702 26908847 -255284817 - MIR3 SINE MIR -37 171 18 1079 89 7 0 chr1 26909082 26909217 -255284447 + AluSq/x SINE Alu 1 136 -177 2383 78 14 0 chr1 26909217 26909512 -255284152 + AluY SINE Alu 1 299 -12 198 71 0 0 chr1 26911912 26911940 -255281724 + (TTGG)n Simple_repeat Simple_repeat 2 29 0 1852 151 45 3 chr1 26912438 26912729 -255280935 - AluSx SINE Alu -9 303 1 258 95 0 0 chr1 26912795 26912837 -255280827 + (TTTTTA)n Simple_repeat Simple_repeat 2 43 0 467 189 11 0 chr1 26913282 26913372 -255280292 - L2 LINE L2 -2 3311 3221 201 191 0 132 chr1 26913391 26913459 -255280205 + MIR3 SINE MIR 118 176 -32 498 229 46 15 chr1 26913787 26913918 -255279746 + MIR SINE MIR 26 160 -102 2165 136 0 0 chr1 26913921 26914223 -255279441 + AluSx SINE Alu 1 302 -10 200 184 0 0 chr1 26914346 26914384 -255279280 + MIR SINE MIR 114 151 -111 457 133 27 0 chr1 26914386 26914461 -255279203 + AluS SINE Alu 3 79 -233 1125 154 6 6 chr1 26914675 26914850 -255278814 + AluJb SINE Alu 130 304 -8 775 131 0 44 chr1 26914853 26914990 -255278674 + FLAM_C SINE Alu 1 131 -2 599 208 98 6 chr1 26915125 26915298 -255278366 + MIR SINE MIR 71 259 -3 2130 104 4 4 chr1 26915490 26915770 -255277894 + AluSq SINE Alu 21 300 -13 2093 106 3 7 chr1 26915781 26916088 -255277576 + AluSq SINE Alu 1 306 0 203 321 0 0 chr1 26916211 26916264 -255277400 - MIR SINE MIR -118 90 38 180 250 0 0 chr1 26916335 26916383 -255277281 + (CA)n Simple_repeat Simple_repeat 1 48 0 213 39 0 0 chr1 26916383 26916409 -255277255 + (TC)n Simple_repeat Simple_repeat 2 27 0 470 116 29 0 chr1 26916692 26916761 -255276903 - MLT1B LTR MaLR -296 94 24 205 326 22 0 chr1 26916856 26916945 -255276719 + MIR SINE MIR 172 262 0 2240 75 11 4 chr1 26917095 26917375 -255276289 + AluSc SINE Alu 1 282 -27 2248 134 0 0 chr1 26917394 26917701 -255275963 + AluSx SINE Alu 1 307 -5 2306 99 0 7 chr1 26917704 26918006 -255275658 + AluSx SINE Alu 1 300 -12 1643 170 7 7 chr1 26918728 26919010 -255274654 - AluJb SINE Alu -30 282 1 2389 87 6 3 chr1 26919075 26919387 -255274277 - AluSp SINE Alu 0 313 1 2203 106 0 20 chr1 26919532 26919834 -255273830 - AluSx SINE Alu -16 296 1 286 241 286 0 chr1 26919936 26920069 -255273595 - MER112 DNA MER1_type -2 258 88 252 220 275 28 chr1 26920155 26920264 -255273400 - MER5B DNA MER1_type -17 161 26 2345 68 0 0 chr1 26920591 26920869 -255272795 - AluY SINE Alu -20 291 14 2335 94 0 7 chr1 26920871 26921169 -255272495 - AluSq SINE Alu -17 296 1 1900 130 7 40 chr1 26924457 26924758 -255268906 + AluSg SINE Alu 1 291 -19 1179 207 23 23 chr1 26926984 26927240 -255266424 - AluJo SINE Alu -14 298 43 409 284 120 16 chr1 26927489 26927672 -255265992 - MIR SINE MIR -12 250 49 233 296 0 0 chr1 26928019 26928100 -255265564 + GA-rich Low_complexity Low_complexity 2 82 0 200 264 0 0 chr1 26928100 26928153 -255265511 + (CTG)n Simple_repeat Simple_repeat 3 55 0 452 194 51 0 chr1 26928315 26928413 -255265251 - L1MB8 LINE L1 -17 6161 6059 1394 50 72 0 chr1 26928533 26928713 -255264951 - L1PA4 LINE L1 -3 6152 5960 197 167 0 17 chr1 26929220 26929280 -255264384 + T-rich Low_complexity Low_complexity 2 60 0 202 29 57 0 chr1 26929565 26929600 -255264064 + (TTTTG)n Simple_repeat Simple_repeat 5 41 0 219 151 19 38 chr1 26929765 26929818 -255263846 + T-rich Low_complexity Low_complexity 5 56 0 225 94 0 0 chr1 26930207 26930239 -255263425 + (TG)n Simple_repeat Simple_repeat 1 32 0 1442 158 15 38 chr1 26930559 26930825 -255262839 + AluJo SINE Alu 2 261 -51 294 286 227 31 chr1 26930986 26931035 -255262629 + L2 LINE L2 1841 1879 -1435 2808 19 0 0 chr1 26931035 26931342 -255262322 + AluYa5 SINE Alu 1 307 -4 294 286 227 31 chr1 26931342 26931680 -255261984 + L2 LINE L2 1879 2304 -1010 959 158 19 0 chr1 26931686 26931844 -255261820 - AluSc SINE Alu -10 299 139 2476 54 24 0 chr1 26931859 26932155 -255261509 - AluY SINE Alu -8 303 1 1766 139 3 58 chr1 26932546 26932856 -255260808 + AluSq SINE Alu 1 293 -20 256 295 0 0 chr1 26932864 26932942 -255260722 + MIR SINE MIR 180 257 -5 358 211 56 0 chr1 26932956 26933046 -255260618 - L2 LINE L2 -8 3264 3170 1210 176 64 78 chr1 26933159 26933454 -255260210 + AluJo SINE Alu 1 291 -11 2001 131 3 7 chr1 26933462 26933760 -255259904 + AluSx SINE Alu 3 299 -13 441 254 36 0 chr1 26933883 26933993 -255259671 - MIR SINE MIR -112 150 37 317 269 8 8 chr1 26934071 26934190 -255259474 - MIR SINE MIR -79 183 65 1616 196 171 17 chr1 26934436 26934845 -255258819 + MLT1F LTR MaLR 63 534 -8 2228 110 0 7 chr1 26935396 26935704 -255257960 - AluSx SINE Alu -6 306 1 1823 112 8 0 chr1 26985864 26986115 -255207549 + AluSx SINE Alu 59 311 -1 282 306 74 19 chr1 26986390 26986498 -255207166 + MIR SINE MIR 37 150 -58 529 188 107 0 chr1 26986580 26986692 -255206972 + FLAM_C SINE Alu 2 125 -8 1204 133 12 0 chr1 26986712 26986878 -255206786 + AluSx SINE Alu 1 168 -144 1069 177 69 0 chr1 26986885 26986917 -255206747 + AluJo SINE Alu 85 113 -199 234 0 0 0 chr1 26986917 26986943 -255206721 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1069 177 69 0 chr1 26986943 26987113 -255206551 + AluJo SINE Alu 113 301 -11 21 0 0 0 chr1 26987131 26987152 -255206512 + AT_rich Low_complexity Low_complexity 1 21 0 403 282 15 23 chr1 26987476 26987607 -255206057 - MIR SINE MIR -100 162 33 506 286 35 12 chr1 26987751 26987922 -255205742 + MIR SINE MIR 21 195 -67 463 307 42 16 chr1 26987961 26988150 -255205514 - L2 LINE L2 0 3313 3120 313 242 50 3 chr1 26988940 26989039 -255204625 + MIR SINE MIR 43 140 -68 1850 109 64 8 chr1 26989787 26990080 -255203584 + AluSg SINE Alu 1 308 0 443 280 118 14 chr1 26990133 26990344 -255203320 + L1MC4 LINE L1 7752 7984 -58 2124 149 0 0 chr1 26990346 26990654 -255203010 - AluSx SINE Alu -4 308 1 949 104 80 0 chr1 26990654 26990779 -255202885 - AluSq/x SINE Alu -177 135 1 2266 127 3 0 chr1 26991218 26991526 -255202138 - AluSx SINE Alu -3 309 1 481 317 6 6 chr1 26991761 26991928 -255201736 + MIR3 SINE MIR 17 183 -25 1075 223 110 18 chr1 26992278 26992668 -255200996 - LTR33A LTR ERVL -8 515 90 564 264 106 14 chr1 26993228 26993436 -255200228 - MIR SINE MIR -22 240 14 209 269 226 11 chr1 26993853 26993946 -255199718 - MIR SINE MIR -51 211 99 517 230 94 32 chr1 26994031 26994197 -255199467 - MIR SINE MIR -40 168 24 424 250 60 32 chr1 26994242 26994458 -255199206 - HsTC2 DNA Tc2 0 1898 1677 307 162 29 29 chr1 26994459 26994527 -255199137 - L1MCa LINE L1 -4361 2065 1998 * 329 356 9 9 chr1 26994497 26994612 -255199052 + L1MC4 LINE L1 6614 6728 -1314 2124 136 10 0 chr1 26994698 26994999 -255198665 + AluSx SINE Alu 3 306 -6 289 212 182 0 chr1 26995197 26995263 -255198401 - MER63 DNA MER1_type -5 1057 980 1856 132 44 30 chr1 26995289 26995585 -255198079 + AluJo SINE Alu 1 300 -12 422 151 108 32 chr1 26995602 26995695 -255197969 - MER63 DNA MER1_type -336 726 1 1055 223 48 4 chr1 26995791 26996020 -255197644 - HsTC2 DNA Tc2 -362 1536 1298 312 235 0 35 chr1 26996071 26996156 -255197508 - HsTC2 DNA Tc2 -1816 82 1 2394 105 3 0 chr1 26996606 26996910 -255196754 - AluSx SINE Alu -7 305 1 231 268 197 0 chr1 26996919 26996990 -255196674 + L2 LINE L2 3186 3270 -2 375 105 0 0 chr1 26997241 26997298 -255196366 + (CGGGG)n Simple_repeat Simple_repeat 2 58 0 337 310 13 44 chr1 26997570 26997728 -255195936 + MIR SINE MIR 34 186 -76 535 165 18 37 chr1 26997791 26997900 -255195764 + MER5A DNA MER1_type 2 108 -81 2238 116 3 3 chr1 26997902 26998212 -255195452 - AluSx SINE Alu -2 310 1 1680 154 57 6 chr1 26998231 26998549 -255195115 - L1MB7 LINE L1 -24 6160 5827 22 70 0 0 chr1 26998592 26998635 -255195029 + AT_rich Low_complexity Low_complexity 1 43 0 2262 154 8 3 chr1 26998646 26999036 -255194628 - L1MC1 LINE L1 -17 6316 5925 1525 208 54 44 chr1 26999038 26999334 -255194330 - MSTD LTR MaLR -2 394 92 1968 176 3 0 chr1 26999334 26999640 -255194024 - AluJo SINE Alu -5 307 1 1525 208 54 44 chr1 26999640 26999733 -255193931 - MSTD LTR MaLR -304 92 1 7033 216 55 32 chr1 26999733 27001427 -255192237 - MSTD-int LTR MaLR 0 1735 2 280 98 0 0 chr1 27001427 27001465 -255192199 - MSTD LTR MaLR -15 381 344 222 156 62 0 chr1 27001465 27001529 -255192135 + (TA)n Simple_repeat Simple_repeat 1 68 0 1262 227 62 10 chr1 27001542 27001850 -255191814 - MSTD LTR MaLR -72 324 1 9339 198 26 31 chr1 27001850 27005078 -255188586 - L1MC1 LINE L1 -404 5929 2722 590 126 0 0 chr1 27005081 27005184 -255188480 - L1MB7 LINE L1 -358 5826 5724 2984 169 43 54 chr1 27005186 27006169 -255187495 - L1MB5 LINE L1 -34 6140 5215 2030 149 0 0 chr1 27006194 27006502 -255187162 - AluJb SINE Alu -4 308 1 1370 158 0 29 chr1 27006505 27006746 -255186918 - AluJo SINE Alu 0 312 79 1774 122 59 24 chr1 27006751 27007039 -255186625 - AluSq SINE Alu -13 300 3 2078 187 59 7 chr1 27007802 27008224 -255185440 - MLT1C LTR MaLR 0 467 24 498 136 0 0 chr1 27008415 27008496 -255185168 + (CA)n Simple_repeat Simple_repeat 2 82 0 2171 115 3 6 chr1 27008561 27008875 -255184789 + AluSq SINE Alu 1 313 0 621 279 164 4 chr1 27008891 27009117 -255184547 + LTR16A1 LTR ERVL 196 457 0 189 289 0 0 chr1 27009287 27009339 -255184325 + L2 LINE L2 3019 3070 -243 1635 307 82 35 chr1 27009457 27009658 -255184006 - ERVL LTR ERVL -2071 3693 3503 3452 77 11 17 chr1 27009658 27010171 -255183493 - L1PA10 LINE L1 0 6168 5707 1635 307 82 35 chr1 27010171 27010618 -255183046 - ERVL LTR ERVL -2261 3503 3015 1054 228 167 34 chr1 27010631 27011009 -255182655 - MLT1D LTR MaLR -47 458 31 491 306 14 57 chr1 27011042 27011202 -255182462 - ERVL LTR ERVL -2039 2957 2805 2055 110 0 0 chr1 27011202 27011503 -255182161 - AluSx SINE Alu 0 301 1 491 306 14 57 chr1 27011503 27011550 -255182114 - ERVL LTR ERVL -2191 2805 2758 996 249 109 28 chr1 27011688 27012045 -255181619 + LTR16A1 LTR ERVL 70 455 -2 2227 100 68 31 chr1 27012056 27012407 -255181257 - THE1B LTR MaLR 0 364 1 8976 91 30 32 chr1 27012407 27013731 -255179933 - THE1B-int LTR MaLR 0 1580 260 508 111 0 0 chr1 27013731 27013803 -255179861 + THE1B LTR MaLR 224 295 -69 586 328 54 4 chr1 27013805 27014046 -255179618 - ERVL LTR ERVL -2327 2669 2417 753 294 74 11 chr1 27014047 27014316 -255179348 + L2 LINE L2 3027 3312 -1 225 0 0 0 chr1 27014692 27014717 -255178947 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2119 110 0 0 chr1 27015507 27015809 -255177855 - AluSx SINE Alu 0 302 1 386 217 130 17 chr1 27015809 27015924 -255177740 + MIR SINE MIR 114 241 -21 192 40 0 0 chr1 27015927 27015952 -255177712 + (TTA)n Simple_repeat Simple_repeat 2 26 0 246 273 52 13 chr1 27015965 27016042 -255177622 - L2 LINE L2 -193 3079 3000 292 282 35 53 chr1 27016232 27016459 -255177205 + L1ME4a LINE L1 5895 6117 -4 1450 160 94 14 chr1 27016470 27016745 -255176919 + AluJo SINE Alu 3 299 -13 235 259 56 83 chr1 27019871 27019979 -255173685 + MIR3 SINE MIR 50 154 -54 261 75 0 0 chr1 27021926 27021966 -255171698 + (T)n Simple_repeat Simple_repeat 1 40 0 343 263 111 47 chr1 27024475 27024646 -255169018 - MIR3 SINE MIR -2 206 25 632 271 152 0 chr1 27024673 27024883 -255168781 + MIR SINE MIR 2 243 -19 543 235 39 20 chr1 27026145 27026298 -255167366 - MIR SINE MIR -85 177 22 188 261 0 0 chr1 27027438 27027484 -255166180 - L2 LINE L2 -4 3268 3223 1524 153 10 67 chr1 27029278 27029591 -255164073 + AluJo SINE Alu 1 295 -17 233 143 0 0 chr1 27030381 27030416 -255163248 + MIR SINE MIR 119 153 -109 213 346 10 50 chr1 27030801 27030902 -255162762 - MIR SINE MIR -61 147 51 2321 78 3 13 chr1 27030917 27031223 -255162441 + AluSx SINE Alu 1 303 -9 372 294 144 0 chr1 27031786 27031946 -255161718 - MER102a DNA MER1_type -2 328 146 268 365 79 0 chr1 27032105 27032231 -255161433 + L3 LINE CR1 878 1013 -564 241 348 84 7 chr1 27033510 27033665 -255159999 - MIR SINE MIR -15 247 81 250 233 16 5 chr1 27033961 27034045 -255159619 + MIR SINE MIR 96 143 -65 288 241 36 24 chr1 27034273 27034356 -255159308 + MIR SINE MIR 63 146 -62 285 303 169 17 chr1 27034814 27034992 -255158672 - MIR SINE MIR -14 248 44 367 260 136 12 chr1 27035769 27035938 -255157726 + L2 LINE L2 2990 3179 -134 * 663 292 67 68 chr1 27035924 27036055 -255157609 - L2 LINE L2 0 3313 3183 2291 96 0 0 chr1 27036055 27036358 -255157306 + AluSx SINE Alu 1 303 -9 663 292 67 68 chr1 27036358 27036722 -255156942 - L2 LINE L2 -130 3183 2819 200 238 48 0 chr1 27036800 27036863 -255156801 + MER5A DNA MER1_type 120 185 -4 247 317 24 0 chr1 27037194 27037276 -255156388 - MIR SINE MIR -68 194 111 241 242 121 11 chr1 27037477 27037568 -255156096 - MIR SINE MIR -60 148 48 349 227 52 58 chr1 27038429 27038584 -255155080 - MIR3 SINE MIR -65 143 8 * 467 281 52 0 chr1 27038556 27038691 -255154973 - MIR SINE MIR -48 214 73 247 270 45 11 chr1 27038758 27038847 -255154817 - MIR3 SINE MIR -36 172 81 330 91 0 0 chr1 27039479 27039534 -255154130 + (TTCA)n Simple_repeat Simple_repeat 2 56 0 843 286 70 22 chr1 27040594 27040965 -255152699 - L1ME4a LINE L1 -12 6109 5721 353 265 0 0 chr1 27041136 27041234 -255152430 - L1ME4a LINE L1 -392 5729 5632 232 217 167 0 chr1 27042795 27042855 -255150809 + L2 LINE L2 3003 3072 -241 1167 131 16 0 chr1 27042858 27043041 -255150623 - AluJ SINE Alu -6 306 121 257 92 31 46 chr1 27043042 27043107 -255150557 + CT-rich Low_complexity Low_complexity 3 66 0 781 152 48 0 chr1 27043107 27043232 -255150432 - AluJ SINE Alu -169 133 3 1978 179 68 19 chr1 27043233 27043702 -255149962 + Charlie4a DNA MER1_type 2 493 -15 496 292 58 6 chr1 27043795 27043966 -255149698 + L2 LINE L2 3133 3312 -1 905 253 150 38 chr1 27044961 27044998 -255148666 + MER20B DNA MER1_type 213 244 -539 1679 143 53 33 chr1 27044998 27045298 -255148366 + AluJb SINE Alu 1 306 -6 905 253 150 38 chr1 27045298 27045767 -255147897 + MER20B DNA MER1_type 244 776 -7 194 241 0 35 chr1 27046254 27046312 -255147352 - MIR3 SINE MIR -1 207 152 930 244 57 0 chr1 27046331 27046560 -255147104 - MIR SINE MIR -3 259 18 21 57 0 0 chr1 27050631 27050666 -255142998 + GC_rich Low_complexity Low_complexity 1 35 0 27 0 0 0 chr1 27050827 27050854 -255142810 + GC_rich Low_complexity Low_complexity 1 27 0 23 68 0 0 chr1 27050893 27050937 -255142727 + GC_rich Low_complexity Low_complexity 1 44 0 28 111 0 0 chr1 27051018 27051144 -255142520 + GC_rich Low_complexity Low_complexity 1 126 0 27 0 0 0 chr1 27051187 27051214 -255142450 + GC_rich Low_complexity Low_complexity 1 27 0 24 0 0 0 chr1 27051220 27051244 -255142420 + GC_rich Low_complexity Low_complexity 1 24 0 402 221 213 8 chr1 27054172 27054299 -255139365 + MIR SINE MIR 90 242 -20 190 184 0 0 chr1 27054904 27054942 -255138722 + MIR SINE MIR 109 146 -62 187 270 264 20 chr1 27055470 27055618 -255138046 - MIR SINE MIR -19 243 60 269 278 19 37 chr1 27055899 27056007 -255137657 - MIR SINE MIR -70 192 87 233 273 39 26 chr1 27056727 27056804 -255136860 - MIR SINE MIR -92 170 93 715 298 19 9 chr1 27057107 27057322 -255136342 - MIR SINE MIR -43 219 3 416 248 62 16 chr1 27057405 27057534 -255136130 - MIR3 SINE MIR -8 200 66 979 193 11 0 chr1 27058114 27058290 -255135374 + MER45A DNA AcHobo 1 178 0 236 243 225 18 chr1 27058439 27058550 -255135114 - MIR SINE MIR -127 135 2 392 289 8 23 chr1 27059097 27059225 -255134439 + MIR3 SINE MIR 78 203 -5 319 301 21 4 chr1 27059238 27059382 -255134282 - MIR3 SINE MIR -58 150 14 1386 199 60 71 chr1 27059525 27059892 -255133772 + MLT1A1 LTR MaLR 3 365 0 216 290 0 28 chr1 27060111 27060218 -255133446 + (CA)n Simple_repeat Simple_repeat 1 104 0 441 297 55 11 chr1 27060902 27061084 -255132580 + L3 LINE CR1 1145 1334 -243 304 218 163 60 chr1 27061253 27061402 -255132262 + MIR SINE MIR 21 182 -26 720 199 0 22 chr1 27061526 27061662 -255132002 + FLAM_A SINE Alu 1 133 0 460 279 25 32 chr1 27062346 27062504 -255131160 - MIR SINE MIR -74 188 32 610 248 60 85 chr1 27063157 27063488 -255130176 - L2 LINE L2 0 3313 2991 561 260 62 0 chr1 27064294 27064471 -255129193 - MIR SINE MIR -3 259 72 247 304 14 0 chr1 27064752 27064821 -255128843 - L3b LINE CR1 -198 1385 1316 966 249 151 37 chr1 27065118 27065349 -255128315 + L2 LINE L2 2804 3007 -306 2304 176 13 71 chr1 27065349 27065883 -255127781 + MLT1D LTR MaLR 1 503 -2 966 249 151 37 chr1 27065883 27066034 -255127630 + L2 LINE L2 3007 3139 -174 672 185 154 6 chr1 27066034 27066196 -255127468 + MER53 DNA DNA 1 186 -3 966 249 151 37 chr1 27066196 27066269 -255127395 + L2 LINE L2 3139 3312 -1 749 239 80 5 chr1 27066364 27066565 -255127099 - MIR SINE MIR -1 261 46 411 98 0 0 chr1 27066958 27067019 -255126645 + (TGAA)n Simple_repeat Simple_repeat 2 62 0 200 239 0 0 chr1 27067029 27067075 -255126589 + MIR SINE MIR 108 153 -109 524 219 92 0 chr1 27067110 27067274 -255126390 - L1ME4a LINE L1 -1 6120 5942 226 316 176 7 chr1 27067514 27067650 -255126014 - L1ME4a LINE L1 -359 5762 5604 224 263 40 53 chr1 27068009 27068085 -255125579 - MIR SINE MIR -79 183 109 181 304 65 0 chr1 27068859 27068951 -255124713 + MIR3 SINE MIR 86 183 -25 508 234 133 6 chr1 27070072 27070230 -255123434 - MIR SINE MIR -48 214 37 233 291 18 73 chr1 27070309 27070419 -255123245 - L2 LINE L2 0 3272 3169 900 223 165 5 chr1 27071010 27071234 -255122430 - MER45C DNA AcHobo 0 953 694 706 202 93 26 chr1 27071274 27071467 -255122197 - MER45C DNA AcHobo -685 268 63 2206 110 0 0 chr1 27071839 27072140 -255121524 + AluSc SINE Alu 1 301 -8 248 235 148 3 chr1 27072380 27072464 -255121200 - MIR SINE MIR -63 145 61 509 224 35 0 chr1 27072674 27072790 -255120874 + MIR SINE MIR 77 196 -66 528 206 9 0 chr1 27072795 27072902 -255120762 + AluJb SINE Alu 195 302 -10 192 250 16 16 chr1 27072902 27072966 -255120698 + MIR SINE MIR 189 252 -10 369 206 20 20 chr1 27073304 27073406 -255120258 - MER103 DNA DNA -61 105 4 524 279 117 11 chr1 27073595 27073774 -255119890 - MIR SINE MIR -43 219 22 183 154 0 0 chr1 27073984 27073998 -255119666 + A-rich Low_complexity Low_complexity 1 14 -25 2362 65 7 0 chr1 27073998 27074307 -255119357 + AluY SINE Alu 1 311 0 183 154 0 0 chr1 27074307 27074331 -255119333 + A-rich Low_complexity Low_complexity 13 39 0 825 227 61 9 chr1 27074341 27074558 -255119106 - MER3 DNA MER1_type -84 125 1 1136 165 110 28 chr1 27074594 27074812 -255118852 + MER46A DNA MER2_type 1 236 0 958 161 0 0 chr1 27074832 27074987 -255118677 - FRAM SINE Alu -18 158 4 300 171 49 37 chr1 27075085 27075167 -255118497 + L1ME4a LINE L1 5966 6048 -73 857 195 0 0 chr1 27075383 27075532 -255118132 + MER45A DNA AcHobo 24 172 -6 225 333 100 0 chr1 27076318 27076438 -255117226 + MIR SINE MIR 95 226 -36 268 269 21 21 chr1 27076568 27076661 -255117003 + MIR3 SINE MIR 63 155 -53 537 223 16 16 chr1 27076715 27076836 -255116828 + L2 LINE L2 3189 3309 -4 199 238 0 0 chr1 27076937 27076979 -255116685 - L2 LINE L2 -13 3259 3218 316 200 33 50 chr1 27077235 27077355 -255116309 - L1ME4a LINE L1 -40 6081 5964 225 301 21 11 chr1 27078220 27078237 -255115427 + LTR3b LTR ERVK 231 246 -191 456 67 0 0 chr1 27078237 27078297 -255115367 + (TCCA)n Simple_repeat Simple_repeat 4 63 0 225 301 21 11 chr1 27078297 27078372 -255115292 + LTR3b LTR ERVK 246 324 -113 713 265 20 5 chr1 27078586 27078786 -255114878 - MIR SINE MIR 0 262 60 454 233 77 2 chr1 27079096 27079245 -255114419 - MIR SINE MIR -37 171 27 266 216 176 0 chr1 27079326 27079400 -255114264 + MIR3 SINE MIR 107 193 -15 226 146 42 21 chr1 27079576 27079624 -255114040 + CT-rich Low_complexity Low_complexity 1 49 0 449 183 24 0 chr1 27080455 27080537 -255113127 + MER81 DNA DNA 2 85 -29 403 318 101 62 chr1 27080809 27081164 -255112500 + L2 LINE L2 2886 3254 -18 541 275 203 0 chr1 27081167 27081374 -255112290 - MIR SINE MIR -10 252 4 310 197 15 0 chr1 27081694 27081760 -255111904 - MIR SINE MIR -60 148 82 231 333 0 46 chr1 27082371 27082479 -255111185 - MIR3 SINE MIR -40 168 66 330 300 10 18 chr1 27082505 27082630 -255111034 - MER5A DNA MER1_type 0 178 59 648 287 125 53 chr1 27082873 27083305 -255110359 + Charlie4a DNA MER1_type 13 475 -33 342 222 0 50 chr1 27084467 27084566 -255109098 - MIR SINE MIR -140 122 29 1504 146 0 80 chr1 27085669 27085971 -255107693 - AluSx SINE Alu -34 278 1 1752 231 5 39 chr1 27085971 27086155 -255107509 + L1PA15-16 LINE L1 2589 2778 -4806 1555 178 39 3 chr1 27086155 27086441 -255107223 + AluJb SINE Alu 1 296 -16 1752 231 5 39 chr1 27086441 27086853 -255106811 + L1PA15-16 LINE L1 2778 3172 -4412 356 101 29 0 chr1 27086853 27086922 -255106742 + AluSp/q SINE Alu 232 302 -1 329 132 0 0 chr1 27086923 27086976 -255106688 + L1PA15-16 LINE L1 3289 3341 -4243 23 0 0 0 chr1 27087077 27087100 -255106564 + AT_rich Low_complexity Low_complexity 1 23 0 48 18 0 0 chr1 27087339 27087394 -255106270 + AT_rich Low_complexity Low_complexity 1 55 0 811 160 100 0 chr1 27089358 27089508 -255104156 + L1PB4 LINE L1 5965 6129 -27 620 336 19 8 chr1 27089611 27089870 -255103794 - HERVL LTR ERVL -2282 3372 3111 649 168 136 77 chr1 27089872 27089955 -255103709 + ORSL DNA AcHobo 2 79 -196 2062 108 17 0 chr1 27089955 27090252 -255103412 + AluSx SINE Alu 1 302 -10 649 168 136 77 chr1 27090252 27090388 -255103276 + ORSL DNA AcHobo 79 234 -41 1011 336 0 4 chr1 27090439 27090710 -255102954 - HERVL LTR ERVL -1905 3091 2822 1664 114 0 0 chr1 27090735 27090963 -255102701 - AluSx SINE Alu -83 229 2 261 241 0 0 chr1 27090977 27091031 -255102633 - Looper DNA T2_type -1 1557 1504 1524 101 5 0 chr1 27091035 27091252 -255102412 - AluY SINE Alu -2 309 92 216 160 50 34 chr1 27091388 27091507 -255102157 + (TATAA)n Simple_repeat Simple_repeat 4 124 0 289 253 32 43 chr1 27091530 27091858 -255101806 + (TATAA)n Simple_repeat Simple_repeat 1 324 0 * 324 118 106 10 chr1 27091739 27092053 -255101611 + (TA)n Simple_repeat Simple_repeat 1 344 0 205 171 0 71 chr1 27092061 27092131 -255101533 + (TTATA)n Simple_repeat Simple_repeat 1 65 0 290 262 135 16 chr1 27092809 27092935 -255100729 - MIR3 SINE MIR -58 150 10 642 297 86 5 chr1 27093276 27093485 -255100179 + MIR SINE MIR 20 245 -17 21 0 0 0 chr1 27093626 27093647 -255100017 + AT_rich Low_complexity Low_complexity 1 21 0 1767 185 0 10 chr1 27093764 27094078 -255099586 - AluJo SINE Alu 0 312 2 961 272 152 5 chr1 27094302 27094670 -255098994 - LTR33A LTR ERVL -3 520 99 464 232 0 24 chr1 27094973 27095224 -255098440 + (CA)n Simple_repeat Simple_repeat 1 245 0 224 314 83 33 chr1 27095288 27095409 -255098255 - MIR SINE MIR -88 174 48 285 270 0 0 chr1 27096182 27096256 -255097408 + MIR SINE MIR 49 122 -86 2122 88 7 14 chr1 27096770 27097064 -255096600 - AluSx SINE Alu -20 292 1 1990 139 0 7 chr1 27097064 27097365 -255096299 - AluSx SINE Alu -13 299 1 750 316 60 32 chr1 27097458 27097894 -255095770 + MLT1J2 LTR MaLR 1 448 -2 1847 162 31 36 chr1 27098043 27098433 -255095231 + Looper DNA T2_type 35 424 -1134 1877 179 0 3 chr1 27098433 27098746 -255094918 - AluJb SINE Alu 0 312 1 1847 162 31 36 chr1 27098746 27098774 -255094890 + Looper DNA T2_type 424 451 -1107 194 174 22 0 chr1 27100158 27100204 -255093460 + GA-rich Low_complexity Low_complexity 2 48 0 213 222 0 0 chr1 27100773 27100827 -255092837 + L2 LINE L2 2917 2970 -302 250 300 75 17 chr1 27100991 27101111 -255092553 - MIR3 SINE MIR -52 156 30 439 262 24 16 chr1 27101519 27101645 -255092019 + MIR SINE MIR 25 151 -111 598 304 41 23 chr1 27101795 27102181 -255091483 + L2 LINE L2 2694 3084 -229 755 256 32 36 chr1 27102348 27102519 -255091145 - MIR SINE MIR -2 260 89 2216 123 0 29 chr1 27102519 27102828 -255090836 - AluSx SINE Alu -12 300 1 755 256 32 36 chr1 27102828 27102875 -255090789 - MIR SINE MIR -173 89 43 261 0 0 0 chr1 27102989 27103018 -255090646 + (CA)n Simple_repeat Simple_repeat 2 30 0 485 296 33 33 chr1 27103322 27103535 -255090129 + MIR SINE MIR 48 260 -2 208 329 27 0 chr1 27104452 27104524 -255089140 + MIR SINE MIR 34 107 -155 548 273 96 0 chr1 27104524 27104750 -255088914 + MIR SINE MIR 1 249 -13 1924 151 27 0 chr1 27105351 27105650 -255088014 + AluJb SINE Alu 3 309 -3 207 0 0 0 chr1 27105669 27105692 -255087972 + (GGGAA)n Simple_repeat Simple_repeat 2 24 0 695 217 36 24 chr1 27105960 27106126 -255087538 - MLT1H LTR MaLR 0 549 382 583 256 18 24 chr1 27106280 27106448 -255087216 - MLT1H LTR MaLR -375 174 8 2501 179 37 10 chr1 27106478 27106970 -255086694 + MLT1D LTR MaLR 1 505 0 2302 95 3 3 chr1 27107744 27108038 -255085626 + AluSq SINE Alu 11 304 -9 538 248 39 33 chr1 27108128 27108281 -255085383 - MIR3 SINE MIR -21 187 34 257 284 21 21 chr1 27108304 27108399 -255085265 + GA-rich Low_complexity Low_complexity 2 96 0 490 128 0 0 chr1 27108428 27108506 -255085158 - AluS SINE Alu -229 84 7 418 186 12 23 chr1 27108783 27108869 -255084795 + MIR3 SINE MIR 78 162 -46 2372 102 0 0 chr1 27108962 27109256 -255084408 + AluSx SINE Alu 1 294 -18 359 291 31 39 chr1 27109982 27110109 -255083555 - L2 LINE L2 0 3272 3147 2498 65 0 0 chr1 27110268 27110561 -255083103 - AluSx SINE Alu -19 293 1 22 0 0 0 chr1 27111115 27111137 -255082527 + AT_rich Low_complexity Low_complexity 1 22 0 247 191 0 107 chr1 27111330 27111414 -255082250 + MLT1K LTR MaLR 514 588 0 505 283 64 41 chr1 27111446 27111883 -255081781 - MLT1L LTR MaLR -3 612 58 471 155 0 0 chr1 27112601 27112685 -255080979 + CT-rich Low_complexity Low_complexity 3 86 0 2264 95 19 32 chr1 27112788 27113104 -255080560 - AluSx SINE Alu 0 312 1 1459 138 4 36 chr1 27113128 27113353 -255080311 - AluJo SINE Alu -94 218 1 416 293 132 0 chr1 27113363 27113537 -255080127 + HERVL LTR ERVL 3565 3761 -1893 607 225 6 77 chr1 27113694 27113825 -255079839 - MIR SINE MIR -69 193 75 2285 77 24 10 chr1 27113825 27113959 -255079705 + AluSg SINE Alu 1 132 -178 2189 86 31 14 chr1 27113959 27114251 -255079413 + AluSg SINE Alu 1 297 -13 2285 77 24 10 chr1 27114251 27114414 -255079250 + AluSg SINE Alu 132 302 -8 607 225 6 77 chr1 27114414 27114451 -255079213 - MIR SINE MIR -187 75 37 543 281 135 0 chr1 27115493 27115685 -255077979 - MIR SINE MIR -14 248 31 2358 112 0 3 chr1 27115836 27116149 -255077515 + AluSx SINE Alu 1 312 0 757 245 97 0 chr1 27117020 27117236 -255076428 - MIR SINE MIR -14 248 12 2305 117 0 0 chr1 27117295 27117595 -255076069 - AluSx SINE Alu -7 305 6 760 227 61 103 chr1 27117747 27118205 -255075459 - MLT1H1 LTR MaLR -2 553 115 617 240 62 17 chr1 27118563 27118742 -255074922 - MIR SINE MIR 0 262 76 1695 62 0 0 chr1 27118977 27119203 -255074461 - L1P LINE L1 -4778 1368 1143 2945 41 0 0 chr1 27119203 27119571 -255074093 + L1PA4 LINE L1 5787 6154 -1 255 277 0 85 chr1 27119635 27119729 -255073935 - MIR SINE MIR -164 98 13 567 268 20 13 chr1 27120069 27120222 -255073442 - MLT1I LTR MaLR -197 212 59 390 309 174 41 chr1 27120399 27120761 -255072903 + L2 LINE L2 2903 3312 -1 186 303 79 0 chr1 27121028 27121104 -255072560 - MIR SINE MIR -89 173 92 1304 249 113 19 chr1 27121229 27121691 -255071973 + MLT1D LTR MaLR 1 505 0 319 313 53 20 chr1 27121984 27122134 -255071530 - MIR3 SINE MIR -26 182 28 329 233 138 35 chr1 27122313 27122429 -255071235 + MIR3 SINE MIR 58 185 -23 381 250 153 14 chr1 27123924 27124068 -255069596 - MER103 DNA DNA -1 165 2 292 215 65 47 chr1 27124275 27124382 -255069282 - MLT1H1 LTR MaLR -442 153 45 708 257 230 20 chr1 27124990 27125472 -255068192 + MLT1G1 LTR MaLR 2 533 -9 942 169 36 0 chr1 27125722 27125917 -255067747 + L1MC3 LINE L1 7574 7775 -10 364 239 71 77 chr1 27126027 27126182 -255067482 - MIR3 SINE MIR -39 169 16 398 260 86 10 chr1 27126187 27126378 -255067286 + MIR3 SINE MIR 11 212 -50 445 264 44 6 chr1 27126731 27126890 -255066774 + LTR33 LTR ERVL 1 165 -356 279 227 109 25 chr1 27126910 27127029 -255066635 - MIR3 SINE MIR -10 198 70 727 260 73 10 chr1 27127314 27127518 -255066146 + MIR SINE MIR 30 246 -16 259 337 12 0 chr1 27127881 27127964 -255065700 - L2 LINE L2 -3 3310 3227 720 268 141 14 chr1 27128164 27128518 -255065146 - L2 LINE L2 0 3313 2915 203 347 32 0 chr1 27129023 27129118 -255064546 + MIR SINE MIR 36 133 -75 25 0 0 0 chr1 27129744 27129769 -255063895 + GC_rich Low_complexity Low_complexity 1 25 0 438 204 63 56 chr1 27130286 27130428 -255063236 + MIR3 SINE MIR 3 145 -63 299 287 21 11 chr1 27130485 27130579 -255063085 - MIR3 SINE MIR -26 182 88 475 303 0 0 chr1 27130866 27130988 -255062676 - MIR3 SINE MIR -5 203 82 2292 104 7 7 chr1 27131639 27131948 -255061716 - AluSg SINE Alu -1 309 1 281 298 12 12 chr1 27132505 27132589 -255061075 - MER5A DNA MER1_type -32 157 74 1364 183 0 0 chr1 27132871 27133084 -255060580 + AluSg/x SINE Alu 85 297 -15 907 278 66 66 chr1 27133527 27133994 -255059670 - MLT1J LTR MaLR 0 511 45 342 301 24 24 chr1 27134019 27134142 -255059522 - L3 LINE CR1 -193 1384 1262 362 236 31 8 chr1 27134402 27134529 -255059135 - L2 LINE L2 -217 3055 2926 429 198 0 12 chr1 27135853 27135934 -255057730 + MER20 DNA MER1_type 1 80 -139 946 243 19 50 chr1 27136163 27136384 -255057280 + L1ME LINE L1 529 755 -5328 1905 152 0 14 chr1 27136384 27136701 -255056963 + AluSq SINE Alu 1 313 0 946 243 19 50 chr1 27136701 27136970 -255056694 + L1ME LINE L1 755 1090 -4993 369 0 0 0 chr1 27137474 27137515 -255056149 + (CA)n Simple_repeat Simple_repeat 2 42 0 804 185 60 38 chr1 27139000 27139184 -255054480 - MER5A DNA MER1_type 0 189 2 2207 126 0 0 chr1 27139269 27139563 -255054101 + AluSx SINE Alu 5 298 -14 358 234 9 36 chr1 27140398 27140509 -255053155 - MER117 DNA MER1_type -33 164 57 32 26 0 0 chr1 27140545 27140584 -255053080 + AT_rich Low_complexity Low_complexity 1 39 0 329 312 96 8 chr1 27141077 27141202 -255052462 - MIR3 SINE MIR -49 159 24 2221 121 0 0 chr1 27141246 27141535 -255052129 + AluSg SINE Alu 1 289 -21 456 276 167 9 chr1 27141702 27141923 -255051741 + L2 LINE L2 2804 3059 -254 232 241 101 13 chr1 27141955 27142034 -255051630 + L2 LINE L2 3228 3313 0 252 183 118 65 chr1 27142077 27142170 -255051494 + MIR SINE MIR 35 132 -76 279 93 0 0 chr1 27143210 27143253 -255050411 + (TG)n Simple_repeat Simple_repeat 2 44 0 227 128 0 0 chr1 27143594 27143633 -255050031 - Alu SINE Alu -6 294 256 332 306 28 0 chr1 27143699 27143807 -255049857 - MER115 DNA AcHobo -318 375 265 1711 98 0 0 chr1 27144520 27144735 -255048929 + AluY SINE Alu 1 215 -96 1523 255 83 43 chr1 27144928 27145432 -255048232 - L1M4 LINE L1 -1336 4810 4327 2244 104 17 0 chr1 27145432 27145721 -255047943 - AluSp SINE Alu -19 294 1 1523 255 83 43 chr1 27145721 27145824 -255047840 - L1M4 LINE L1 -1819 4327 4230 690 181 0 30 chr1 27145824 27145957 -255047707 - FLAM_C SINE Alu -4 129 1 1523 255 83 43 chr1 27145957 27146317 -255047347 - L1M4 LINE L1 -1916 4230 3804 250 212 24 123 chr1 27146345 27146437 -255047227 - L1M4 LINE L1 -2726 3420 3351 2169 122 14 0 chr1 27146437 27146732 -255046932 - AluSq SINE Alu -14 299 1 250 212 24 123 chr1 27146732 27146809 -255046855 - L1M4 LINE L1 -2795 3351 3268 271 298 0 65 chr1 27147356 27147480 -255046184 + MIR SINE MIR 100 215 -47 353 283 74 24 chr1 27147758 27148140 -255045524 - L1MC3 LINE L1 -221 5949 5597 1883 192 80 34 chr1 27148160 27148652 -255045012 - MLT1D LTR MaLR 0 505 1 199 0 0 0 chr1 27148775 27148797 -255044867 + (TTA)n Simple_repeat Simple_repeat 2 180 0 2143 108 11 0 chr1 27148797 27149076 -255044588 - AluSx SINE Alu -1 303 1 332 195 77 16 chr1 27149096 27149261 -255044403 - L1MD2 LINE L1 -16 6343 6070 726 78 0 0 chr1 27149912 27150014 -255043650 + (TTCC)n Simple_repeat Simple_repeat 4 105 0 181 309 78 103 chr1 27150014 27150334 -255043330 - L2 LINE L2 -11 3261 2950 381 288 23 15 chr1 27150444 27150576 -255043088 - MIR3 SINE MIR -17 191 59 221 302 58 12 chr1 27150691 27150777 -255042887 - MIR SINE MIR -57 151 62 341 276 22 67 chr1 27150922 27151009 -255042655 - MIR SINE MIR -61 147 67 1488 181 9 55 chr1 27151009 27151334 -255042330 - AluJb SINE Alu 0 312 3 341 276 22 67 chr1 27151334 27151380 -255042284 - MIR SINE MIR -141 67 20 414 289 25 8 chr1 27152558 27152679 -255040985 + MIR SINE MIR 49 171 -91 282 297 75 22 chr1 27152804 27152942 -255040722 + MIR3 SINE MIR 11 153 -74 201 368 0 11 chr1 27152997 27153092 -255040572 + MIR SINE MIR 4 97 -165 431 255 7 40 chr1 27153301 27153450 -255040214 - L2 LINE L2 -218 3054 2911 1733 212 21 16 chr1 27153570 27153942 -255039722 - MLT1A2 LTR MaLR 0 374 1 273 263 192 0 chr1 27154011 27154110 -255039554 + L2 LINE L2 3150 3267 -5 846 279 43 23 chr1 27154252 27154557 -255039107 - L2 LINE L2 0 3313 3003 2368 229 62 9 chr1 27154558 27154619 -255039045 + MLT1F1 LTR MaLR 3 59 -508 2154 128 0 0 chr1 27154619 27154924 -255038740 + AluSx SINE Alu 1 305 -7 2368 229 62 9 chr1 27154924 27155394 -255038270 + MLT1F1 LTR MaLR 59 562 -5 220 234 68 0 chr1 27155616 27155684 -255037980 - MIR SINE MIR -87 121 49 227 343 38 9 chr1 27155717 27155822 -255037842 + MER5A DNA MER1_type 64 171 -18 231 256 0 39 chr1 27155893 27155971 -255037693 + L2 LINE L2 2985 3059 -213 464 228 0 24 chr1 27156441 27156692 -255036972 + (TG)n Simple_repeat Simple_repeat 1 245 0 478 251 22 25 chr1 27157408 27157587 -255036077 - MIR SINE MIR 0 262 41 306 229 34 155 chr1 27157594 27157758 -255035906 - MIR SINE MIR -68 140 14 297 305 21 0 chr1 27157892 27157987 -255035677 - MIR SINE MIR -116 146 50 262 305 162 9 chr1 27158502 27158607 -255035057 - MIR SINE MIR -71 137 17 250 293 24 0 chr1 27158615 27158697 -255034967 + MIR SINE MIR 64 147 -115 1084 258 81 32 chr1 27158706 27159078 -255034586 - LTR16C LTR ERVL 0 491 102 42 20 0 0 chr1 27159125 27159174 -255034490 + AT_rich Low_complexity Low_complexity 1 49 0 1518 182 32 52 chr1 27159174 27159482 -255034182 - AluJb SINE Alu 0 302 1 5897 247 107 39 chr1 27159844 27160353 -255033311 - HAL1 LINE L1 0 2507 2034 1677 148 7 22 chr1 27160353 27160624 -255033040 + AluJb SINE Alu 1 267 -45 441 0 0 0 chr1 27160631 27160680 -255032984 + (GGAA)n Simple_repeat Simple_repeat 1 49 0 5897 247 107 39 chr1 27160680 27162501 -255031163 - HAL1 LINE L1 -478 2029 12 334 287 5 79 chr1 27162556 27162694 -255030970 + L1M4 LINE L1 4522 4643 -1503 1625 164 36 0 chr1 27162694 27162991 -255030673 + AluSx SINE Alu 1 307 0 334 287 5 79 chr1 27162991 27163053 -255030611 + L1M4 LINE L1 4643 4708 -1438 1898 157 0 0 chr1 27163054 27163383 -255030281 + AluJb SINE Alu 1 329 0 2618 197 70 23 chr1 27163383 27163952 -255029712 + LTR48B LTR ERV1 30 625 -19 376 316 146 18 chr1 27164290 27164461 -255029203 + L2 LINE L2 3076 3268 -4 636 333 99 34 chr1 27164557 27164695 -255028969 - L2 LINE L2 -1 3271 3143 2498 118 28 3 chr1 27164695 27165050 -255028614 + THE1B LTR MaLR 1 364 0 636 333 99 34 chr1 27165050 27165347 -255028317 - L2 LINE L2 -129 3143 2808 754 185 0 8 chr1 27165593 27165723 -255027941 - FLAM_C SINE Alu 0 133 5 591 228 18 77 chr1 27165878 27166295 -255027369 + MLT1C LTR MaLR 12 458 -9 332 298 128 14 chr1 27166462 27166603 -255027061 + MIR SINE MIR 13 169 -93 250 264 55 11 chr1 27166662 27166753 -255026911 + MIR SINE MIR 21 115 -147 187 269 0 90 chr1 27167230 27167308 -255026356 - MIR SINE MIR -79 183 113 259 298 113 8 chr1 27167461 27167585 -255026079 - L1ME4a LINE L1 -8 6113 5977 752 274 102 12 chr1 27168316 27168648 -255025016 - L2 LINE L2 -14 3299 2938 350 175 125 0 chr1 27168821 27168901 -255024763 + MER53 DNA DNA 94 183 -6 236 310 67 54 chr1 27168998 27169237 -255024427 - L2 LINE L2 -557 2757 2516 326 333 46 0 chr1 27171020 27171173 -255022491 + L2 LINE L2 2904 3063 -209 186 174 43 101 chr1 27171216 27171285 -255022379 + L2 LINE L2 3200 3264 -8 323 332 62 41 chr1 27171305 27171549 -255022115 - MIR SINE MIR -6 256 8 2266 149 6 3 chr1 27171866 27172228 -255021436 + MLT2D LTR ERVL 3 365 -49 895 241 21 25 chr1 27172233 27172470 -255021194 - MLT1K LTR MaLR -159 429 194 673 255 116 14 chr1 27172747 27172963 -255020701 - L3 LINE CR1 -30 1547 1310 459 332 97 0 chr1 27173072 27173268 -255020396 - MIR SINE MIR -36 226 12 303 293 26 17 chr1 27173277 27173393 -255020271 - L3 LINE CR1 -383 1194 1078 1487 262 59 92 chr1 27173394 27174001 -255019663 - MLT1K LTR MaLR 0 588 2 212 345 12 0 chr1 27174072 27174156 -255019508 - L3 LINE CR1 -548 1029 945 496 246 41 16 chr1 27174277 27174399 -255019265 + L2 LINE L2 3189 3313 0 1603 256 107 31 chr1 27174470 27174876 -255018788 - L2 LINE L2 -90 3223 2849 1711 158 3 31 chr1 27174876 27175193 -255018471 - AluJb SINE Alu -4 308 1 1603 256 107 31 chr1 27175193 27175708 -255017956 - L2 LINE L2 -464 2849 2241 265 315 54 2 chr1 27175825 27175940 -255017724 - MIR SINE MIR -63 145 54 880 311 24 25 chr1 27176045 27176506 -255017158 - MLT1K LTR MaLR -56 532 3 261 274 20 0 chr1 27176740 27176842 -255016822 + L2 LINE L2 2866 2969 -303 284 302 180 0 chr1 27176891 27177030 -255016634 + L2 LINE L2 3109 3272 0 464 300 29 0 chr1 27177566 27177706 -255015958 - MIR SINE MIR -73 189 46 561 179 163 63 chr1 27177717 27177747 -255015917 + MER63A DNA MER1_type 2 28 -1660 216 0 0 0 chr1 27177747 27177771 -255015893 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 561 179 163 63 chr1 27177771 27177930 -255015734 + MER63A DNA MER1_type 28 210 0 445 280 72 31 chr1 27178686 27178879 -255014785 + MIR SINE MIR 47 247 -15 906 229 21 0 chr1 27179003 27179195 -255014469 + MIR SINE MIR 67 262 0 283 284 58 52 chr1 27179537 27179692 -255013972 + MLT1K LTR MaLR 100 255 -333 261 284 40 14 chr1 27179795 27179869 -255013795 + MIR SINE MIR 36 111 -97 284 260 260 8 chr1 27179955 27180078 -255013586 - MIR SINE MIR -96 166 13 317 281 22 0 chr1 27180200 27180289 -255013375 + MIR SINE MIR 58 148 -60 216 275 199 0 chr1 27180911 27181042 -255012622 + MIR3 SINE MIR 30 186 -22 211 333 25 0 chr1 27181506 27181587 -255012077 + MIR3 SINE MIR 111 193 -15 223 342 112 0 chr1 27181893 27182045 -255011619 + L2 LINE L2 2870 3038 -234 403 261 33 20 chr1 27182543 27182696 -255010968 + (GGTTG)n Simple_repeat Simple_repeat 1 155 0 328 175 36 119 chr1 27182735 27182929 -255010735 + (GGTTG)n Simple_repeat Simple_repeat 2 179 0 213 39 0 0 chr1 27183632 27183658 -255010006 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 2822 16 0 0 chr1 27183666 27183984 -255009680 - AluYb8 SINE Alu 0 318 1 343 372 14 7 chr1 27184377 27184525 -255009139 - MIR3 SINE MIR -31 177 29 303 200 43 0 chr1 27184558 27184628 -255009036 + MIR SINE MIR 58 130 -78 1161 182 34 5 chr1 27184634 27184843 -255008821 + MER20 DNA MER1_type 1 215 -4 598 178 19 0 chr1 27184853 27184960 -255008704 + MER81 DNA DNA 6 114 0 323 276 65 24 chr1 27185413 27185536 -255008128 + L2 LINE L2 3144 3271 -1 2196 85 3 23 chr1 27185807 27186112 -255007552 - AluSx SINE Alu -13 299 1 426 226 52 9 chr1 27186179 27186294 -255007370 + MIR SINE MIR 65 184 -78 205 171 0 71 chr1 27187326 27187396 -255006268 + (TATAA)n Simple_repeat Simple_repeat 1 65 0 293 88 113 6 chr1 27187404 27187564 -255006100 + (TA)n Simple_repeat Simple_repeat 1 177 0 249 235 45 45 chr1 27187576 27187755 -255005909 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 * 295 286 28 34 chr1 27187695 27187873 -255005791 + (TTACG)n Simple_repeat Simple_repeat 3 179 0 249 169 41 29 chr1 27188015 27188187 -255005477 + (TTATA)n Simple_repeat Simple_repeat 1 174 0 296 339 120 6 chr1 27188809 27188992 -255004672 - MER113 DNA MER1_type? -83 438 235 1271 219 126 91 chr1 27189012 27189533 -255004131 + MLT1E3 LTR MaLR 34 622 -2 1832 89 0 0 chr1 27189549 27189785 -255003879 - AluSx SINE Alu -76 236 1 1253 258 120 34 chr1 27189870 27190378 -255003286 + MLT1H1 LTR MaLR 1 552 -3 183 302 0 0 chr1 27190525 27190568 -255003096 - L2 LINE L2 -11 3261 3219 180 200 0 25 chr1 27190671 27190711 -255002953 + L2 LINE L2 3270 3308 -5 252 233 233 0 chr1 27190743 27190846 -255002818 - L2 LINE L2 -1 3271 3145 457 278 148 22 chr1 27190947 27191177 -255002487 - MIR SINE MIR -2 260 2 270 277 40 30 chr1 27192770 27192871 -255000793 - L2 LINE L2 -493 2821 2720 1635 177 34 0 chr1 27192919 27193213 -255000451 - AluJb SINE Alu -8 304 1 1925 102 11 0 chr1 27193222 27193513 -255000151 - AluSc SINE Alu 0 313 20 228 322 116 0 chr1 27193516 27193637 -255000027 - MER117 DNA MER1_type -32 165 31 267 308 0 13 chr1 27193763 27193841 -254999823 - MIR SINE MIR -107 155 79 2393 197 30 17 chr1 27195525 27195998 -254997666 + MLT1F LTR MaLR 57 535 -7 1771 188 48 24 chr1 27196066 27196169 -254997495 + LTR37B LTR ERV1 1 100 -368 2259 147 55 0 chr1 27196169 27196515 -254997149 + MLT1A1 LTR MaLR 1 365 0 1771 188 48 24 chr1 27196515 27196868 -254996796 + LTR37B LTR ERV1 100 468 0 241 303 135 45 chr1 27196879 27197057 -254996607 - L3 LINE CR1 -126 1451 1258 21 0 0 0 chr1 27197118 27197139 -254996525 + AT_rich Low_complexity Low_complexity 1 21 0 187 403 0 0 chr1 27197699 27197771 -254995893 + L2 LINE L2 3140 3211 -61 771 175 19 25 chr1 27198384 27198544 -254995120 - MIR SINE MIR -75 187 29 519 294 87 0 chr1 27198618 27198802 -254994862 + MIR SINE MIR 46 245 -17 187 314 12 23 chr1 27199091 27199177 -254994487 + MIR SINE MIR 21 105 -157 237 299 119 60 chr1 27199225 27199359 -254994305 + MIR SINE MIR 117 258 -4 291 377 31 0 chr1 27199368 27199498 -254994166 - MIR SINE MIR -70 192 59 426 326 62 5 chr1 27200018 27200211 -254993453 - MIR SINE MIR -51 211 8 218 256 167 13 chr1 27200257 27200335 -254993329 + MER5B DNA MER1_type 1 90 -88 2047 130 16 0 chr1 27200356 27200691 -254992973 + AluSx SINE Alu 1 340 0 281 270 0 0 chr1 27200730 27200793 -254992871 - MIR SINE MIR -55 153 91 413 221 84 0 chr1 27201471 27201566 -254992098 + MIR3 SINE MIR 82 184 -24 2294 113 0 0 chr1 27201650 27201961 -254991703 + AluSx SINE Alu 1 311 -1 257 259 19 0 chr1 27202311 27202365 -254991299 + MIR SINE MIR 15 69 -193 235 318 91 23 chr1 27203266 27203398 -254990266 + MIR SINE MIR 6 146 -116 187 378 0 11 chr1 27203526 27203616 -254990048 - MIR3 SINE MIR -25 183 95 268 280 0 56 chr1 27203705 27203812 -254989852 + MIR3 SINE MIR 87 187 -21 492 255 76 0 chr1 27204400 27204557 -254989107 + MIR3 SINE MIR 2 170 -38 477 273 0 0 chr1 27205224 27205622 -254988042 + (CA)n Simple_repeat Simple_repeat 1 398 0 225 298 0 0 chr1 27205642 27205746 -254987918 + (CA)n Simple_repeat Simple_repeat 1 104 0 283 296 43 84 chr1 27205948 27206170 -254987494 - MIR SINE MIR -42 220 4 405 254 39 16 chr1 27207043 27207210 -254986454 + MER5A DNA MER1_type 6 178 0 271 130 22 0 chr1 27207391 27207437 -254986227 + MIR SINE MIR 81 127 -81 229 333 74 9 chr1 27208816 27208924 -254984740 + MIR SINE MIR 100 214 -48 727 231 61 106 chr1 27208941 27209205 -254984459 - MIR SINE MIR -10 252 1 597 306 56 37 chr1 27209251 27209599 -254984065 + L2 LINE L2 2915 3272 0 297 317 77 0 chr1 27210969 27211073 -254982591 + MIR3 SINE MIR 87 198 -10 276 271 59 0 chr1 27211160 27211245 -254982419 - MIR SINE MIR -81 127 38 393 320 39 0 chr1 27211451 27211607 -254982057 - MIR3 SINE MIR -35 173 11 888 161 0 7 chr1 27211632 27211781 -254981883 + FRAM SINE Alu 1 148 -28 180 0 0 0 chr1 27211781 27211801 -254981863 + (TAA)n Simple_repeat Simple_repeat 2 21 0 23 0 0 0 chr1 27212195 27212218 -254981446 + AT_rich Low_complexity Low_complexity 1 23 0 447 324 43 0 chr1 27213017 27213156 -254980508 + MIR SINE MIR 12 156 -106 193 304 0 0 chr1 27215021 27215067 -254978597 + L2 LINE L2 3217 3262 -10 367 274 118 33 chr1 27215082 27215235 -254978429 + L1ME4a LINE L1 5926 6091 -30 557 307 118 13 chr1 27215483 27215711 -254977953 + MIR SINE MIR 8 259 -3 2200 127 0 6 chr1 27215722 27216036 -254977628 - AluSx SINE Alu 0 312 1 435 183 47 6 chr1 27216600 27216988 -254976676 + (TGGA)n Simple_repeat Simple_repeat 1 403 0 315 323 89 25 chr1 27217193 27217351 -254976313 - L2 LINE L2 -2 3270 3103 265 254 0 42 chr1 27217674 27217745 -254975919 + MIR3 SINE MIR 101 168 -40 * 443 325 9 0 chr1 27217741 27217855 -254975809 - MIR SINE MIR -1 261 147 446 240 91 26 chr1 27218603 27218757 -254974907 - MIR SINE MIR -92 170 7 192 211 211 0 chr1 27218908 27218979 -254974685 + L2 LINE L2 3170 3255 -17 325 293 38 47 chr1 27219207 27219313 -254974351 + MIR SINE MIR 20 124 -138 399 276 35 0 chr1 27219811 27219927 -254973737 + MIR SINE MIR 31 150 -58 181 278 111 0 chr1 27220008 27220080 -254973584 - MIR SINE MIR -124 138 59 288 276 67 9 chr1 27220087 27220192 -254973472 + MIR SINE MIR 20 130 -78 465 66 0 0 chr1 27220852 27220913 -254972751 + (TG)n Simple_repeat Simple_repeat 2 62 0 200 167 28 0 chr1 27221016 27221052 -254972612 - MIR SINE MIR -116 146 110 758 175 0 16 chr1 27221267 27221450 -254972214 + (CCA)n Simple_repeat Simple_repeat 1 180 0 248 242 20 0 chr1 27221452 27221551 -254972113 + (CACCAT)n Simple_repeat Simple_repeat 5 105 0 658 234 0 12 chr1 27221566 27221995 -254971669 + (CCA)n Simple_repeat Simple_repeat 1 423 0 982 260 14 5 chr1 27222313 27222536 -254971128 - MIR SINE MIR -37 225 1 452 266 35 0 chr1 27222597 27222710 -254970954 + L2 LINE L2 3197 3313 0 498 239 12 32 chr1 27222890 27223093 -254970571 - MIR SINE MIR -27 235 39 237 65 0 0 chr1 27223246 27223277 -254970387 + (CACCC)n Simple_repeat Simple_repeat 4 34 0 393 297 29 14 chr1 27223588 27223726 -254969938 - MIR SINE MIR -29 233 94 238 256 49 61 chr1 27223923 27224005 -254969659 - MIR SINE MIR 0 262 182 * 1119 222 92 35 chr1 27223993 27224362 -254969302 - L2 LINE L2 0 3313 2924 452 252 63 9 chr1 27224476 27224587 -254969077 - MIR SINE MIR -72 136 20 373 265 74 19 chr1 27225385 27225547 -254968117 - MIR3 SINE MIR -27 181 11 309 226 108 0 chr1 27225769 27225862 -254967802 + MIR SINE MIR 100 202 -60 878 238 94 28 chr1 27226027 27226346 -254967318 + LTR16C LTR ERVL 149 488 -3 378 291 165 11 chr1 27226349 27226531 -254967133 - MIR SINE MIR -49 213 4 497 286 26 0 chr1 27226686 27226840 -254966824 - L2 LINE L2 -230 3042 2885 24 0 0 0 chr1 27227050 27227074 -254966590 + AT_rich Low_complexity Low_complexity 1 24 0 180 0 0 0 chr1 27227089 27227109 -254966555 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 303 264 73 39 chr1 27227124 27227302 -254966362 - L1 LINE L1 -1071 5075 4892 300 62 21 0 chr1 27227479 27227527 -254966137 - MER52C LTR ERV1 0 1278 1230 4576 229 85 50 chr1 27227532 27228993 -254964671 - MER52A LTR ERV1 -243 1512 1 1200 174 60 30 chr1 27228992 27229369 -254964295 - MLT1D LTR MaLR -3 502 85 * 1129 196 8 36 chr1 27229369 27229619 -254964045 - MLT1D-int LTR MaLR -141 1230 988 232 159 16 32 chr1 27229651 27229714 -254963950 + L1M4 LINE L1 4951 5012 -1134 * 972 227 97 14 chr1 27229713 27229991 -254963673 + L1ME1 LINE L1 5857 6157 -9 2119 91 0 55 chr1 27229991 27230299 -254963365 - AluSc SINE Alu -18 291 1 750 125 30 12 chr1 27230346 27230514 -254963150 + GA-rich Low_complexity Low_complexity 3 173 0 657 322 93 4 chr1 27231040 27231276 -254962388 + MIR SINE MIR 5 261 -1 323 258 54 0 chr1 27231693 27231786 -254961878 + MIR SINE MIR 56 153 -55 405 228 61 18 chr1 27231824 27231938 -254961726 - MIR SINE MIR -27 235 117 193 339 0 0 chr1 27231989 27232045 -254961619 - MIR SINE MIR -63 145 90 675 276 14 28 chr1 27232785 27232999 -254960665 - MIR SINE MIR -3 259 49 279 319 98 6 chr1 27234459 27234622 -254959042 - L1MC4a LINE L1 -1922 5886 5709 260 54 0 0 chr1 27234729 27234766 -254958898 + MER4A LTR ERV1 1 37 -627 326 345 36 7 chr1 27235800 27235939 -254957725 - MER5B DNA MER1_type 0 178 36 375 246 161 0 chr1 27236107 27236237 -254957427 - MER104 DNA Tc2 -26 154 4 327 371 117 26 chr1 27236335 27236764 -254956900 + L2 LINE L2 2825 3292 -21 423 314 104 36 chr1 27237191 27237411 -254956253 + MIR SINE MIR 18 252 -10 1538 218 32 50 chr1 27237919 27238299 -254955365 + MLT1A2 LTR MaLR 2 374 0 349 237 0 26 chr1 27238301 27238377 -254955287 + MIR SINE MIR 79 152 -110 337 369 114 21 chr1 27238908 27239144 -254954520 - MIR SINE MIR -1 261 4 769 171 6 11 chr1 27239707 27239888 -254953776 + CT-rich Low_complexity Low_complexity 1 180 0 249 108 0 0 chr1 27239918 27239955 -254953709 + (TTCC)n Simple_repeat Simple_repeat 3 39 0 190 361 92 29 chr1 27239968 27240206 -254953458 - L2 LINE L2 -67 3246 2994 227 333 39 0 chr1 27240636 27240714 -254952950 + MIR SINE MIR 66 146 -62 356 294 37 0 chr1 27241251 27241360 -254952304 + MIR SINE MIR 33 145 -63 443 250 17 50 chr1 27241360 27241540 -254952124 - LTR16B LTR ERVL 0 464 291 548 305 100 5 chr1 27242483 27242693 -254950971 - MIR SINE MIR -1 261 32 266 320 136 0 chr1 27242757 27242882 -254950782 - MIR SINE MIR -62 200 59 17671 32 0 0 chr1 27243655 27246524 -254947140 + L1PA3 LINE L1 3264 6153 -2 767 210 56 0 chr1 27246572 27246734 -254946930 + MIR SINE MIR 61 231 -31 234 290 0 14 chr1 27246760 27246829 -254946835 - L1MC4a LINE L1 -2166 5642 5575 206 398 17 0 chr1 27247107 27247225 -254946439 + MIR3 SINE MIR 9 128 -80 296 207 0 0 chr1 27247328 27247386 -254946278 + MER96 DNA MER1_type? 115 172 -3 303 232 9 89 chr1 27247388 27247500 -254946164 + MIR SINE MIR 116 218 -44 216 67 0 0 chr1 27247637 27247667 -254945997 + (TG)n Simple_repeat Simple_repeat 2 31 0 272 233 0 78 chr1 27248022 27248125 -254945539 - MIR SINE MIR -80 182 88 2223 115 3 3 chr1 27248725 27249037 -254944627 + AluSq SINE Alu 1 312 -1 241 310 26 35 chr1 27249075 27249188 -254944476 - MIR SINE MIR -33 229 118 991 286 85 24 chr1 27249189 27249647 -254944017 - LTR16C LTR ERVL -2 489 4 358 258 22 0 chr1 27249649 27249738 -254943926 - MIR SINE MIR -84 124 34 369 0 0 0 chr1 27250024 27250065 -254943599 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 451 284 0 68 chr1 27250171 27250361 -254943303 + Charlie8 DNA MER1_type 4 180 -2237 384 253 63 32 chr1 27250491 27250649 -254943015 + MIR3 SINE MIR 22 184 -24 190 360 50 0 chr1 27252110 27252210 -254941454 - MIR SINE MIR -113 149 45 265 317 5 54 chr1 27253425 27253611 -254940053 + C-rich Low_complexity Low_complexity 4 180 0 * 381 337 12 6 chr1 27253512 27253681 -254939983 + CT-rich Low_complexity Low_complexity 3 172 0 355 281 92 20 chr1 27254795 27254948 -254938716 - L2 LINE L2 -1 3312 3149 277 286 0 0 chr1 27254944 27255007 -254938657 - MIR SINE MIR 0 262 200 * 286 261 70 38 chr1 27255017 27255174 -254938490 + L1ME4a LINE L1 5922 6083 -38 186 118 0 0 chr1 27255254 27255288 -254938376 + (TTAA)n Simple_repeat Simple_repeat 1 34 0 476 258 172 21 chr1 27255899 27256085 -254937579 - MIR SINE MIR -48 214 1 559 282 0 13 chr1 27256188 27256337 -254937327 + MIR3 SINE MIR 4 150 -58 582 273 98 8 chr1 27256383 27256619 -254937045 - MIR SINE MIR -3 259 2 180 236 18 18 chr1 27256724 27256779 -254936885 + L2 LINE L2 3211 3265 -7 614 293 16 21 chr1 27257361 27257549 -254936115 - MIR3 SINE MIR -4 204 18 284 259 118 47 chr1 27257869 27257987 -254935677 + MIR SINE MIR 49 184 -78 2284 173 31 5 chr1 27257987 27258408 -254935256 + MSTB1 LTR MaLR 1 432 0 284 259 118 47 chr1 27258408 27258459 -254935205 + MIR SINE MIR 184 230 -32 1663 241 41 2 chr1 27258550 27258985 -254934679 - HsTC2 DNA Tc2 -7 1891 1440 411 113 0 113 chr1 27259033 27259130 -254934534 - FLAM_C SINE Alu 0 143 58 479 229 153 13 chr1 27259132 27259289 -254934375 - HsTC2 DNA Tc2 -446 1452 1274 524 231 243 0 chr1 27259395 27259564 -254934100 - MIR SINE MIR -6 256 47 731 261 47 14 chr1 27259728 27259939 -254933725 - MIR SINE MIR -29 233 16 351 0 0 0 chr1 27310685 27310724 -254882940 + (CA)n Simple_repeat Simple_repeat 2 40 0 804 185 60 38 chr1 27312209 27312393 -254881271 - MER5A DNA MER1_type 0 189 2 2207 126 0 0 chr1 27312478 27312772 -254880892 + AluSx SINE Alu 5 298 -14 358 234 9 36 chr1 27313607 27313718 -254879946 - MER117 DNA MER1_type -33 164 57 32 26 0 0 chr1 27313754 27313793 -254879871 + AT_rich Low_complexity Low_complexity 1 39 0 193 312 91 0 chr1 27313812 27313889 -254879775 + L2 LINE L2 3226 3309 -4 329 312 96 8 chr1 27314288 27314413 -254879251 - MIR3 SINE MIR -49 159 24 2221 121 0 0 chr1 27314457 27314746 -254878918 + AluSg SINE Alu 1 289 -21 456 276 167 9 chr1 27314913 27315134 -254878530 + L2 LINE L2 2804 3059 -254 232 241 101 13 chr1 27315166 27315245 -254878419 + L2 LINE L2 3228 3313 0 252 183 118 65 chr1 27315288 27315381 -254878283 + MIR SINE MIR 35 132 -76 279 93 0 0 chr1 27316421 27316464 -254877200 + (TG)n Simple_repeat Simple_repeat 2 44 0 227 128 0 0 chr1 27316805 27316844 -254876820 - Alu SINE Alu -6 296 258 428 290 27 10 chr1 27316910 27317184 -254876480 - MER115 DNA AcHobo -318 375 33 663 312 45 25 chr1 27317206 27317646 -254876018 + L2 LINE L2 2638 3084 -229 769 237 36 41 chr1 27317813 27317984 -254875680 - MIR SINE MIR -2 260 89 2222 123 0 26 chr1 27317984 27318292 -254875372 - AluSx SINE Alu -12 300 1 769 237 36 41 chr1 27318292 27318339 -254875325 - MIR SINE MIR -173 89 43 243 0 0 0 chr1 27318453 27318480 -254875184 + (CA)n Simple_repeat Simple_repeat 2 28 0 485 296 33 33 chr1 27318784 27318997 -254874667 + MIR SINE MIR 48 260 -2 208 329 27 0 chr1 27319912 27319984 -254873680 + MIR SINE MIR 34 107 -155 537 276 96 0 chr1 27319984 27320210 -254873454 + MIR SINE MIR 1 249 -13 1924 151 27 0 chr1 27320811 27321110 -254872554 + AluJb SINE Alu 3 309 -3 513 141 22 60 chr1 27321114 27321298 -254872366 + GA-rich Low_complexity Low_complexity 2 178 0 505 285 72 45 chr1 27322024 27322461 -254871203 + MLT1L LTR MaLR 58 612 -3 247 191 0 107 chr1 27322493 27322577 -254871087 - MLT1K LTR MaLR 0 588 514 22 0 0 0 chr1 27322770 27322792 -254870872 + AT_rich Low_complexity Low_complexity 1 22 0 2498 65 0 0 chr1 27323346 27323639 -254870025 + AluSx SINE Alu 1 293 -19 359 291 31 39 chr1 27323798 27323925 -254869739 + L2 LINE L2 3147 3272 0 2345 105 0 0 chr1 27324615 27324909 -254868755 - AluSx SINE Alu -18 294 1 418 186 12 23 chr1 27325001 27325087 -254868577 - MIR3 SINE MIR -46 162 78 483 141 0 0 chr1 27325364 27325442 -254868222 + AluS SINE Alu 7 84 -229 253 244 37 37 chr1 27325471 27325553 -254868111 + CT-rich Low_complexity Low_complexity 2 83 0 538 248 39 33 chr1 27325589 27325742 -254867922 + MIR3 SINE MIR 34 187 -21 2359 106 3 0 chr1 27325832 27326135 -254867529 - AluSq SINE Alu -9 304 1 2538 175 37 10 chr1 27326898 27327390 -254866274 - MLT1D LTR MaLR 0 505 1 584 262 18 24 chr1 27327420 27327588 -254866076 + MLT1H LTR MaLR 8 174 -375 712 211 36 24 chr1 27327742 27327908 -254865756 + MLT1H LTR MaLR 382 549 0 255 277 0 85 chr1 27328237 27328331 -254865333 + MIR SINE MIR 13 98 -164 2945 41 0 0 chr1 27328395 27328763 -254864901 - L1PA4 LINE L1 -1 6154 5787 1706 62 0 0 chr1 27328763 27328989 -254864675 + L1P LINE L1 1143 1368 -4778 595 246 62 17 chr1 27329224 27329403 -254864261 + MIR SINE MIR 76 262 0 766 231 57 98 chr1 27329761 27330219 -254863445 + MLT1H1 LTR MaLR 115 553 -2 2287 120 0 0 chr1 27330371 27330671 -254862993 + AluSx SINE Alu 6 305 -7 710 259 97 0 chr1 27330730 27330946 -254862718 + MIR SINE MIR 12 248 -14 2255 119 0 3 chr1 27331812 27332115 -254861549 - AluSx SINE Alu -10 302 1 543 281 135 0 chr1 27332266 27332458 -254861206 + MIR SINE MIR 31 248 -14 207 0 0 0 chr1 27333540 27333563 -254860101 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 985 109 29 0 chr1 27333566 27333703 -254859961 - AluSg/x SINE Alu -35 277 137 2471 63 0 13 chr1 27333705 27334005 -254859659 - AluSg SINE Alu -14 296 1 540 236 8 16 chr1 27334009 27334136 -254859528 + MIR SINE MIR 68 193 -69 456 279 134 0 chr1 27334295 27334467 -254859197 - ERVL LTR ERVL -1966 3798 3604 1497 134 5 31 chr1 27334477 27334701 -254858963 + AluJo SINE Alu 1 218 -94 2256 109 20 0 chr1 27334725 27335029 -254858635 + AluSx SINE Alu 1 310 -2 794 353 29 17 chr1 27335124 27335535 -254858129 - ERVL LTR ERVL -2199 3565 3150 665 168 136 77 chr1 27335537 27335620 -254858044 + ORSL DNA AcHobo 2 79 -196 2197 108 17 0 chr1 27335620 27335917 -254857747 + AluSx SINE Alu 1 302 -10 665 168 136 77 chr1 27335917 27336053 -254857611 + ORSL DNA AcHobo 79 234 -41 986 336 0 4 chr1 27336104 27336375 -254857289 - ERVL LTR ERVL -1905 3091 2822 1767 114 0 0 chr1 27336400 27336628 -254857036 - AluSx SINE Alu -83 229 2 1619 206 7 27 chr1 27336642 27336702 -254856962 - Looper DNA T2_type -1 1557 1497 1943 82 4 0 chr1 27336702 27336946 -254856718 - AluY SINE Alu -7 304 60 1619 206 7 27 chr1 27336946 27337297 -254856367 - Looper DNA T2_type -61 1497 1154 1894 158 31 36 chr1 27337916 27337944 -254855720 - Looper DNA T2_type -1107 451 424 1995 179 0 3 chr1 27337944 27338257 -254855407 + AluJb SINE Alu 1 312 0 1894 158 31 36 chr1 27338257 27338647 -254855017 - Looper DNA T2_type -1134 424 35 579 314 60 32 chr1 27338796 27339232 -254854432 - MLT1J2 LTR MaLR -2 448 1 2172 133 0 7 chr1 27339325 27339626 -254854038 + AluSx SINE Alu 1 299 -13 2261 88 7 14 chr1 27339626 27339920 -254853744 + AluSx SINE Alu 1 292 -20 25 0 0 0 chr1 27339920 27339945 -254853719 + AT_rich Low_complexity Low_complexity 1 25 0 2244 93 10 10 chr1 27340079 27340369 -254853295 - AluSx SINE Alu -22 290 1 387 286 0 9 chr1 27340946 27341051 -254852613 - MER5A DNA MER1_type -80 109 6 355 281 92 20 chr1 27342274 27342427 -254851237 - L2 LINE L2 -1 3312 3149 277 286 0 0 chr1 27342423 27342486 -254851178 - MIR SINE MIR 0 262 200 * 286 261 70 38 chr1 27342496 27342653 -254851011 + L1ME4a LINE L1 5922 6083 -38 186 118 0 0 chr1 27342733 27342767 -254850897 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 476 258 172 21 chr1 27343378 27343564 -254850100 - MIR SINE MIR -48 214 1 559 282 0 13 chr1 27343667 27343816 -254849848 + MIR3 SINE MIR 4 150 -58 582 273 98 8 chr1 27343862 27344098 -254849566 - MIR SINE MIR -3 259 2 180 236 18 18 chr1 27344203 27344258 -254849406 + L2 LINE L2 3211 3265 -7 600 298 16 21 chr1 27344840 27345028 -254848636 - MIR3 SINE MIR -4 204 18 316 263 116 56 chr1 27345238 27345373 -254848291 + MIR SINE MIR 34 186 -76 2425 161 36 9 chr1 27345373 27345794 -254847870 + MSTB1 LTR MaLR 1 432 0 316 263 116 56 chr1 27345794 27345856 -254847808 + MIR SINE MIR 186 243 -19 1709 241 41 2 chr1 27345936 27346371 -254847293 - HsTC2 DNA Tc2 -7 1891 1440 429 91 0 131 chr1 27346416 27346515 -254847149 - FLAM_A SINE Alu 0 142 57 515 223 153 13 chr1 27346517 27346674 -254846990 - HsTC2 DNA Tc2 -446 1452 1274 182 111 28 28 chr1 27346780 27346816 -254846848 - MIR SINE MIR -6 256 221 552 209 29 0 chr1 27346844 27346949 -254846715 - MIR SINE MIR -108 154 47 763 246 52 19 chr1 27347113 27347324 -254846340 - MIR SINE MIR -29 233 16 395 242 24 32 chr1 27348076 27348200 -254845464 - MER5B DNA MER1_type -54 124 2 333 265 51 20 chr1 27348243 27348341 -254845323 - MIR3 SINE MIR -18 190 90 198 0 0 0 chr1 27348749 27348771 -254844893 + (A)n Simple_repeat Simple_repeat 1 22 0 2138 97 7 0 chr1 27348771 27349059 -254844605 + AluSx SINE Alu 1 290 -22 617 245 117 10 chr1 27350389 27350585 -254843079 + MIR SINE MIR 46 262 0 365 213 74 39 chr1 27350574 27350591 -254843073 - MIR SINE MIR -65 143 128 * 326 23 0 23 chr1 27350591 27350635 -254843029 + (CAT)n Simple_repeat Simple_repeat 1 43 0 365 213 74 39 chr1 27350635 27350773 -254842891 - MIR SINE MIR -80 128 4 277 232 106 28 chr1 27351689 27351831 -254841833 + L2 LINE L2 2826 2978 -335 1485 163 6 62 chr1 27352094 27352440 -254841224 - AluJo SINE Alu 0 312 1 573 272 57 31 chr1 27352456 27352684 -254840980 - MIR SINE MIR 0 262 29 210 310 35 11 chr1 27352713 27352800 -254840864 - L3b LINE CR1 -197 1386 1298 409 202 0 216 chr1 27353197 27353405 -254840259 + MIR SINE MIR 100 262 0 364 247 39 57 chr1 27353492 27353655 -254840009 - MER5A DNA MER1_type -4 185 15 2448 55 7 0 chr1 27353655 27353964 -254839700 + AluY SINE Alu 1 311 0 247 245 0 0 chr1 27354071 27354124 -254839540 + CT-rich Low_complexity Low_complexity 2 54 0 526 309 36 6 chr1 27354340 27354508 -254839156 - MIR3 SINE MIR -27 181 9 700 290 50 9 chr1 27354580 27354801 -254838863 - MIR SINE MIR -13 249 20 1108 221 290 0 chr1 27354807 27355214 -254838450 + LTR50 LTR ERVL 1 525 -270 290 222 74 37 chr1 27355255 27355323 -254838341 + LTR50 LTR ERVL 629 707 -88 2297 63 0 0 chr1 27355323 27355634 -254838030 + AluSg SINE Alu 1 311 0 290 222 74 37 chr1 27355634 27355670 -254837994 + LTR50 LTR ERVL 707 740 -55 * 540 220 191 14 chr1 27355668 27355877 -254837787 + LTR50 LTR ERVL 259 504 -291 2201 94 0 7 chr1 27355982 27356280 -254837384 - AluSx SINE Alu -16 296 1 3918 148 75 18 chr1 27356423 27356497 -254837167 + L1MD1 LINE L1 5345 5413 -829 615 155 13 45 chr1 27356497 27356652 -254837012 + L1MA5 LINE L1 6151 6300 0 3918 148 75 18 chr1 27356652 27357301 -254836363 + L1MD1 LINE L1 5413 6109 -133 529 14 29 0 chr1 27357314 27357384 -254836280 + (TAGA)n Simple_repeat Simple_repeat 2 73 0 1943 89 7 29 chr1 27357384 27357664 -254836000 - AluSc SINE Alu -20 289 16 327 25 0 0 chr1 27357664 27357704 -254835960 + (TC)n Simple_repeat Simple_repeat 2 41 0 239 154 0 0 chr1 27357734 27357786 -254835878 + L1MC4 LINE L1 6652 6703 -1339 320 210 0 0 chr1 27357814 27357876 -254835788 - AluS SINE Alu -241 62 1 772 141 0 0 chr1 27357883 27358011 -254835653 + L1MD1 LINE L1 6114 6241 -1 2189 71 4 4 chr1 27359273 27359600 -254834064 + AluSx SINE Alu 1 327 0 453 233 155 78 chr1 27359907 27360178 -254833486 + L1ME4a LINE L1 5807 6098 -23 423 0 0 0 chr1 27360228 27360275 -254833389 + (TA)n Simple_repeat Simple_repeat 2 48 0 218 316 158 43 chr1 27360365 27360599 -254833065 - L2 LINE L2 -40 3232 2972 460 244 0 24 chr1 27360746 27360869 -254832795 - MIR3 SINE MIR -1 207 88 729 260 59 5 chr1 27361298 27361502 -254832162 + MIR SINE MIR 8 222 -40 513 236 16 31 chr1 27361515 27361642 -254832022 + L2 LINE L2 3148 3272 0 334 311 43 0 chr1 27361790 27361951 -254831713 + L1MC4 LINE L1 422 589 -5941 1541 256 87 76 chr1 27361980 27362590 -254831074 + L1MC4 LINE L1 677 1279 -5442 2035 120 13 3 chr1 27362590 27362889 -254830775 + AluSx SINE Alu 1 302 -10 1541 256 87 76 chr1 27362889 27363308 -254830356 + L1MC4 LINE L1 1279 1692 -5029 905 199 0 11 chr1 27363308 27363499 -254830165 + MER53 DNA DNA 1 189 0 1541 256 87 76 chr1 27363499 27363912 -254829752 + L1MC4 LINE L1 1692 2137 -4584 1602 151 13 37 chr1 27363969 27364267 -254829397 + AluJo SINE Alu 1 291 -21 328 281 97 49 chr1 27364400 27364585 -254829079 + L1MC4 LINE L1 2344 2537 -4003 768 283 125 40 chr1 27364612 27365172 -254828492 + L1MC4 LINE L1 2618 3250 -3290 2164 88 20 0 chr1 27365172 27365467 -254828197 + AluY SINE Alu 1 301 -10 768 283 125 40 chr1 27365467 27365603 -254828061 + L1MC4 LINE L1 3250 3373 -3167 911 130 26 0 chr1 27365603 27365757 -254827907 + BC200 scRNA scRNA 1 158 -42 289 263 155 7 chr1 27365757 27366029 -254827635 + L1MC4 LINE L1 3358 7922 -514 2832 216 59 10 chr1 27366029 27366621 -254827043 - MLT1E2 LTR MaLR 0 626 6 1119 267 16 26 chr1 27366623 27367001 -254826663 + L1MC4 LINE L1 7917 8290 -146 307 105 53 13 chr1 27367006 27367082 -254826582 + GA-rich Low_complexity Low_complexity 1 79 0 271 180 191 0 chr1 27367089 27367178 -254826486 + L1MC4 LINE L1 8327 8432 -4 981 231 77 126 chr1 27367205 27367910 -254825754 + L1ME3A LINE L1 3211 3949 -2197 2062 115 7 7 chr1 27367910 27368205 -254825459 + AluSq SINE Alu 3 297 -16 1762 137 29 35 chr1 27368207 27368521 -254825143 + AluJb SINE Alu 1 312 0 981 231 77 126 chr1 27368521 27369014 -254824650 + L1ME3A LINE L1 3950 4334 -1812 2087 104 13 0 chr1 27369048 27369356 -254824308 - AluSx SINE Alu 0 312 1 25 51 0 0 chr1 27369370 27369409 -254824255 + AT_rich Low_complexity Low_complexity 1 39 0 884 249 93 88 chr1 27369537 27370059 -254823605 + L1ME3A LINE L1 4315 4833 -1337 2243 99 0 0 chr1 27370059 27370363 -254823301 + AluSx SINE Alu 1 304 -8 884 249 93 88 chr1 27370363 27370665 -254822999 + L1ME3A LINE L1 4833 5132 -1038 2697 90 3 8 chr1 27370665 27371041 -254822623 - L1PB1 LINE L1 -2 6149 5776 884 249 93 88 chr1 27371041 27371955 -254821709 + L1ME3A LINE L1 5132 6056 -114 411 156 111 11 chr1 27372197 27372287 -254821377 - MIR SINE MIR -49 213 115 467 278 104 12 chr1 27372354 27372527 -254821137 + L2 LINE L2 2184 2372 -942 1377 169 77 7 chr1 27372647 27372919 -254820745 + L1MC4 LINE L1 6743 7033 -1009 * 5724 168 65 47 chr1 27372907 27373106 -254820558 + L1ME1 LINE L1 3850 4044 -2289 274 103 0 0 chr1 27373106 27373145 -254820519 - U2 snRNA snRNA -149 39 1 5724 168 65 47 chr1 27373145 27373491 -254820173 + L1ME1 LINE L1 4044 4382 -1951 2019 142 0 0 chr1 27373491 27373800 -254819864 + AluSx SINE Alu 1 309 -3 5724 168 65 47 chr1 27373800 27374688 -254818976 + L1ME1 LINE L1 4382 5253 -1080 949 218 0 0 chr1 27374688 27374858 -254818806 + FAM SINE Alu 1 170 -5 5724 168 65 47 chr1 27374858 27375806 -254817858 + L1ME1 LINE L1 5253 6333 0 537 145 0 0 chr1 27375814 27375890 -254817774 + AluJ/FLAM SINE Alu 2 77 -235 946 236 144 0 chr1 27375895 27376166 -254817498 + L1MC4 LINE L1 7533 7842 -200 25 31 0 0 chr1 27376975 27377007 -254816657 + AT_rich Low_complexity Low_complexity 1 32 0 4055 168 69 27 chr1 27377008 27377470 -254816194 + L1MB5 LINE L1 4928 5369 -805 1467 145 42 28 chr1 27377470 27377759 -254815905 + L1MA8 LINE L1 5995 6287 -4 4055 168 69 27 chr1 27377759 27377911 -254815753 + L1MB5 LINE L1 5369 5513 -661 1666 119 53 69 chr1 27377911 27378214 -254815450 - AluSx SINE Alu -14 298 1 4055 168 69 27 chr1 27378214 27378791 -254814873 + L1MB5 LINE L1 5513 6174 0 1750 60 0 26 chr1 27378849 27379081 -254814583 + AluY SINE Alu 74 299 -12 373 150 14 9 chr1 27379095 27379168 -254814496 + L1MC3 LINE L1 6966 7017 -768 1247 84 6 0 chr1 27379168 27379346 -254814318 + (GGAA)n Simple_repeat Simple_repeat 1 179 0 373 150 14 9 chr1 27379346 27379363 -254814301 + L1MC3 LINE L1 7017 7032 -753 315 122 0 0 chr1 27379363 27379412 -254814252 + (GGGA)n Simple_repeat Simple_repeat 1 49 0 190 309 217 20 chr1 27379648 27379800 -254813864 - L2 LINE L2 -328 2985 2804 231 216 307 0 chr1 27380385 27380473 -254813191 - MIR SINE MIR -72 136 22 1192 209 44 113 chr1 27380779 27381321 -254812343 + LTR22 LTR ERVK 1 505 -4 409 266 125 0 chr1 27381503 27381631 -254812033 + MIR3 SINE MIR 35 178 -30 438 36 0 0 chr1 27381699 27381755 -254811909 + (TGGA)n Simple_repeat Simple_repeat 3 58 0 201 74 0 0 chr1 27381788 27381815 -254811849 + (CATATA)n Simple_repeat Simple_repeat 2 28 0 249 224 0 0 chr1 27381851 27381909 -254811755 + GA-rich Low_complexity Low_complexity 4 61 0 241 315 99 25 chr1 27382384 27382546 -254811118 + L2 LINE L2 2352 2525 -789 589 225 127 80 chr1 27382576 27382631 -254811033 - MIR SINE MIR -27 235 184 1692 156 23 13 chr1 27382631 27382933 -254810731 + AluJo SINE Alu 1 305 -7 589 225 127 80 chr1 27382933 27383090 -254810574 - MIR SINE MIR -78 184 13 572 259 197 73 chr1 27383110 27383284 -254810380 + L2 LINE L2 2552 2703 -610 1937 117 3 7 chr1 27383284 27383673 -254809991 + AluSx SINE Alu 1 388 0 572 259 197 73 chr1 27383673 27384178 -254809486 + L2 LINE L2 2703 3313 0 1761 158 3 0 chr1 27384417 27384715 -254808949 + AluJo SINE Alu 1 299 -13 1358 195 26 89 chr1 27384735 27385115 -254808549 + L1ME3 LINE L1 5754 6109 -53 202 292 0 0 chr1 27385520 27385568 -254808096 - L2 LINE L2 -16 3256 3209 342 111 19 0 chr1 27385663 27385717 -254807947 - MLT2C1 LTR ERVL 0 554 500 864 176 0 0 chr1 27385719 27385889 -254807775 + (TGGA)n Simple_repeat Simple_repeat 4 173 0 2020 163 25 0 chr1 27385889 27386215 -254807449 - MLT2C1 LTR ERVL -61 336 3 293 286 143 15 chr1 27387845 27387978 -254805686 + MIR SINE MIR 102 251 -11 1064 142 0 6 chr1 27387993 27388162 -254805502 + AluJb SINE Alu 143 310 -2 2931 198 33 36 chr1 27388204 27388907 -254804757 + L1MB8 LINE L1 5478 6178 0 2446 107 22 25 chr1 27388954 27389319 -254804345 + THE1B LTR MaLR 1 364 0 2239 109 81 62 chr1 27389370 27389600 -254804064 - MSTA LTR MaLR 0 428 185 2128 115 7 0 chr1 27389600 27389905 -254803759 - AluSc SINE Alu -2 307 1 2239 109 81 62 chr1 27389905 27390094 -254803570 - MSTA LTR MaLR -243 185 1 2518 155 16 32 chr1 27390271 27390384 -254803280 - MSTB LTR MaLR 0 426 313 2202 106 0 6 chr1 27390384 27390696 -254802968 + AluSx SINE Alu 1 310 -2 2518 155 16 32 chr1 27390696 27391015 -254802649 - MSTB LTR MaLR -113 313 1 238 263 42 76 chr1 27391115 27391233 -254802431 - L2 LINE L2 -8 3264 3151 629 313 51 0 chr1 27391435 27391630 -254802034 + MIR SINE MIR 10 214 -48 2144 82 32 0 chr1 27391909 27392191 -254801473 + AluSg SINE Alu 1 291 -19 229 292 97 0 chr1 27392232 27392304 -254801360 + L2 LINE L2 3234 3312 -1 2272 113 0 0 chr1 27392313 27392624 -254801040 + AluSx SINE Alu 1 311 -1 1011 217 45 9 chr1 27392838 27393059 -254800605 - MIR SINE MIR 0 262 34 2393 74 0 0 chr1 27393068 27393377 -254800287 - AluY SINE Alu -2 309 1 423 231 250 45 chr1 27393562 27393718 -254799946 + MIR SINE MIR 63 250 -12 2127 115 0 0 chr1 27393718 27394022 -254799642 - AluSq SINE Alu -9 304 1 31 65 0 13 chr1 27394579 27394602 -254799062 + AT_rich Low_complexity Low_complexity 1 23 -53 1660 128 0 94 chr1 27394602 27394899 -254798765 + AluJb SINE Alu 28 296 -16 31 65 0 13 chr1 27394899 27394940 -254798724 + AT_rich Low_complexity Low_complexity 23 76 0 358 280 101 24 chr1 27395614 27395782 -254797882 + MIR SINE MIR 51 231 -31 487 279 37 19 chr1 27395829 27395990 -254797674 - MIR SINE MIR -36 226 63 248 127 36 55 chr1 27396982 27397037 -254796627 + MIR SINE MIR 79 132 -76 2468 81 3 0 chr1 27397071 27397369 -254796295 + AluSg SINE Alu 1 299 -11 2413 89 7 0 chr1 27397446 27397749 -254795915 + AluSx SINE Alu 2 306 -6 2297 107 3 7 chr1 27399208 27399518 -254794146 + AluSx SINE Alu 1 309 -3 1182 207 16 0 chr1 27400146 27400392 -254793272 + L1ME2 LINE L1 5577 5826 -340 1457 148 119 29 chr1 27400392 27400669 -254792995 + AluJo SINE Alu 1 302 -10 2112 113 3 28 chr1 27400674 27400994 -254792670 + AluSx SINE Alu 1 312 0 287 279 29 0 chr1 27400996 27401100 -254792564 + L1ME2 LINE L1 5895 6001 -163 776 198 12 12 chr1 27401107 27401269 -254792395 + L1MA10 LINE L1 6173 6334 0 21 36 0 0 chr1 27401306 27401334 -254792330 + AT_rich Low_complexity Low_complexity 1 28 0 776 194 0 0 chr1 27401339 27401463 -254792201 + FLAM_A SINE Alu 1 124 -9 2085 124 7 0 chr1 27401474 27401790 -254791874 + AluSx SINE Alu 1 318 0 2390 92 7 0 chr1 27401802 27402105 -254791559 - AluSq SINE Alu -8 305 1 658 183 73 19 chr1 27402840 27403095 -254790569 + MER63 DNA MER1_type 3 243 -818 1875 153 0 3 chr1 27403095 27403401 -254790263 - AluJb SINE Alu 0 305 1 658 183 73 19 chr1 27403401 27403451 -254790213 + MER63 DNA MER1_type 243 1014 -47 261 240 225 23 chr1 27403761 27403890 -254789774 - L3 LINE CR1 -1 1576 1422 265 247 26 26 chr1 27403890 27403967 -254789697 - L2 LINE L2 -2 3270 3194 277 314 129 26 chr1 27404021 27404180 -254789484 + MIR SINE MIR 28 212 -50 2048 116 17 3 chr1 27404180 27404473 -254789191 + AluSx SINE Alu 1 297 -15 277 314 129 26 chr1 27404473 27404507 -254789157 + MIR SINE MIR 212 241 -21 288 250 66 0 chr1 27404515 27404591 -254789073 - L3 LINE CR1 -252 1325 1245 488 282 86 41 chr1 27404612 27404832 -254788832 - MIR SINE MIR 0 262 33 468 283 11 0 chr1 27405902 27406079 -254787585 + (CA)n Simple_repeat Simple_repeat 1 179 0 2153 121 0 3 chr1 27406151 27406449 -254787215 - AluSx SINE Alu -15 297 1 350 304 6 11 chr1 27406499 27406680 -254786984 + (CA)n Simple_repeat Simple_repeat 1 180 0 238 226 8 8 chr1 27406697 27406830 -254786834 + (CA)n Simple_repeat Simple_repeat 1 133 0 359 241 43 57 chr1 27407537 27407678 -254785986 - MIR SINE MIR -118 144 6 709 293 66 5 chr1 27407858 27408070 -254785594 - MIR SINE MIR -3 259 35 2057 131 3 10 chr1 27408845 27409143 -254784521 + AluSx SINE Alu 1 296 -16 751 235 81 32 chr1 27409244 27409465 -254784199 - MIR SINE MIR 0 262 31 241 232 0 0 chr1 27410933 27410989 -254782675 + GA-rich Low_complexity Low_complexity 1 56 0 201 241 0 0 chr1 27411271 27411325 -254782339 + GA-rich Low_complexity Low_complexity 1 54 0 347 343 24 12 chr1 27412867 27413036 -254780628 + MIR SINE MIR 3 173 -89 1823 177 0 22 chr1 27413119 27413430 -254780234 - AluJb SINE Alu -8 304 1 2377 142 37 22 chr1 27413932 27414341 -254779323 + MSTB LTR MaLR 3 417 -9 2069 136 0 26 chr1 27414343 27414653 -254779011 + AluSx SINE Alu 1 302 -10 2276 108 10 0 chr1 27415411 27415706 -254777958 - AluSp SINE Alu -15 298 1 189 353 87 20 chr1 27415709 27415859 -254777805 + MIR SINE MIR 98 257 -5 2030 149 36 0 chr1 27415869 27416170 -254777494 + AluSx SINE Alu 1 312 0 587 142 236 0 chr1 27416694 27416821 -254776843 - MER58B DNA MER1_type -14 327 171 2127 81 81 3 chr1 27416821 27417106 -254776558 + AluSc SINE Alu 1 307 -2 1304 106 0 6 chr1 27417108 27417288 -254776376 + AluSg/x SINE Alu 127 305 -5 739 153 73 0 chr1 27417289 27417413 -254776251 - MER5A DNA MER1_type -56 133 1 935 249 32 16 chr1 27418992 27419047 -254774617 - MIR SINE MIR -1 261 208 2371 94 3 0 chr1 27419047 27419346 -254774318 - AluSx SINE Alu -12 300 1 935 249 32 16 chr1 27419346 27419543 -254774121 - MIR SINE MIR -54 208 5 228 161 36 18 chr1 27419691 27419747 -254773917 + MLT1I LTR MaLR 68 124 -285 2221 120 0 10 chr1 27419789 27420097 -254773567 + AluSx SINE Alu 1 305 -7 397 308 154 4 chr1 27420383 27420617 -254773047 + MLT1L LTR MaLR 342 610 -5 21 36 0 0 chr1 27420912 27420940 -254772724 + AT_rich Low_complexity Low_complexity 1 28 0 266 75 0 0 chr1 27420940 27420980 -254772684 - LTR5 LTR ERVK -164 805 766 351 192 0 14 chr1 27421166 27421239 -254772425 + L2 LINE L2 2867 2938 -334 452 222 48 87 chr1 27421241 27421448 -254772216 + L2 LINE L2 3113 3311 -2 1954 131 17 77 chr1 27421637 27421690 -254771974 - L1MB7 LINE L1 -8 6176 6121 2615 53 0 3 chr1 27421690 27421990 -254771674 + AluY SINE Alu 1 299 -12 1954 131 17 77 chr1 27421990 27422303 -254771361 - L1MB7 LINE L1 -63 6121 5833 2342 74 3 0 chr1 27422303 27422619 -254771045 - AluSp SINE Alu 0 317 1 1954 131 17 77 chr1 27422619 27422654 -254771010 - L1MB7 LINE L1 -351 5833 5797 3292 173 59 54 chr1 27422671 27423416 -254770248 - MER21B LTR ERV1 -72 791 43 379 237 0 0 chr1 27423414 27423490 -254770174 - MER21B LTR ERV1 -769 94 19 * 323 202 71 30 chr1 27423488 27423587 -254770077 - MER21B LTR ERV1 -757 106 4 * 2010 152 0 34 chr1 27423587 27423973 -254769691 + AluJb SINE Alu 1 375 0 415 226 39 0 chr1 27423973 27424075 -254769589 + MLT1C LTR MaLR 337 442 -25 2078 147 3 0 chr1 27424093 27424385 -254769279 - AluJb SINE Alu -19 293 1 271 284 125 0 chr1 27424424 27424512 -254769152 - MLT1G1 LTR MaLR -496 99 1 268 263 70 26 chr1 27424512 27424626 -254769038 - MLT1G1-int LTR MaLR 0 1371 1253 2472 96 0 0 chr1 27424626 27424929 -254768735 - AluSq SINE Alu -10 303 1 199 245 0 19 chr1 27425210 27425263 -254768401 - L3 LINE CR1 -1 1576 1525 582 203 91 0 chr1 27425263 27425406 -254768258 + L1ME3 LINE L1 5834 5989 -173 683 144 25 25 chr1 27425425 27425543 -254768121 + FLAM_A SINE Alu 19 136 -6 1885 134 76 4 chr1 27425562 27425839 -254767825 + AluSx SINE Alu 1 297 -15 428 262 131 6 chr1 27425839 27426007 -254767657 + L1ME3 LINE L1 5967 6155 -7 2255 122 0 0 chr1 27426239 27426535 -254767129 + AluSx SINE Alu 1 296 -16 1560 179 47 24 chr1 27426544 27426841 -254766823 + AluJo SINE Alu 1 304 -8 2866 7 0 3 chr1 27426845 27427152 -254766512 + AluYa5 SINE Alu 1 306 -5 2133 94 3 39 chr1 27427354 27427663 -254766001 + AluSx SINE Alu 13 310 -2 2035 138 10 0 chr1 27428030 27428321 -254765343 - AluSx SINE Alu -18 294 1 2253 109 0 16 chr1 27428974 27429287 -254764377 + AluSg SINE Alu 2 309 -1 747 247 59 36 chr1 27429300 27429427 -254764237 - MIR SINE MIR -24 238 102 1896 178 42 29 chr1 27429427 27429810 -254763854 + MLT1B LTR MaLR 1 388 -2 747 247 59 36 chr1 27429810 27429901 -254763763 - MIR SINE MIR -160 102 15 334 301 18 9 chr1 27429978 27430091 -254763573 - MIR SINE MIR -8 254 141 401 274 72 26 chr1 27430780 27430933 -254762731 - MER113 DNA MER1_type? -111 410 251 609 245 83 10 chr1 27430973 27431560 -254762104 - L1MEc LINE L1 -5178 1218 565 276 254 15 0 chr1 27431615 27431682 -254761982 - MIR SINE MIR -50 212 145 1291 253 96 49 chr1 27431685 27432195 -254761469 - L1MEc LINE L1 -5834 562 29 2160 110 10 13 chr1 27432202 27432502 -254761162 - AluSx SINE Alu -13 299 1 377 331 42 36 chr1 27432510 27432676 -254760988 - L1 LINE L1 -1665 4481 4315 437 106 0 160 chr1 27432731 27432783 -254760881 - MADE1 DNA Mariner -1 79 47 2200 117 3 0 chr1 27432783 27433082 -254760582 + AluSx SINE Alu 2 301 -11 437 106 0 160 chr1 27433082 27433123 -254760541 - MADE1 DNA Mariner -33 47 1 234 349 130 9 chr1 27433202 27433417 -254760247 - MLT1L LTR MaLR -180 435 195 1878 99 8 0 chr1 27433517 27433760 -254759904 + AluSg SINE Alu 44 288 -22 303 337 20 20 chr1 27433793 27433894 -254759770 - L1 LINE L1 -2317 3829 3729 854 121 38 8 chr1 27434039 27434171 -254759493 + AluJo SINE Alu 1 136 -176 214 264 0 0 chr1 27434210 27434263 -254759401 + A-rich Low_complexity Low_complexity 3 55 0 2090 140 0 3 chr1 27434342 27434634 -254759030 - AluSx SINE Alu -21 291 1 703 186 85 21 chr1 27434768 27434956 -254758708 + L1MC5 LINE L1 7669 7868 -93 620 124 0 170 chr1 27436117 27436270 -254757394 + FLAM_C SINE Alu 1 127 -6 2211 126 0 0 chr1 27436322 27436616 -254757048 + AluSx SINE Alu 1 294 -18 265 181 0 121 chr1 27436624 27436670 -254756994 - MIR SINE MIR 0 262 229 2047 151 0 7 chr1 27436670 27436968 -254756696 - AluJb SINE Alu -16 296 1 265 181 0 121 chr1 27436968 27437004 -254756660 - MIR SINE MIR -33 229 190 23 55 0 18 chr1 27437629 27437656 -254756008 + AT_rich Low_complexity Low_complexity 1 27 -27 2125 133 0 0 chr1 27437656 27437949 -254755715 + AluSx SINE Alu 1 293 -19 23 55 0 18 chr1 27437949 27437976 -254755688 + AT_rich Low_complexity Low_complexity 27 54 0 2479 75 0 0 chr1 27437988 27438281 -254755383 + AluSg SINE Alu 1 293 -17 2215 106 33 7 chr1 27438284 27438587 -254755077 + AluSx SINE Alu 1 311 -1 467 269 47 13 chr1 27438590 27438739 -254754925 - MIR3 SINE MIR -15 193 40 760 189 8 0 chr1 27438809 27438941 -254754723 + MER58B DNA MER1_type 207 339 -2 1647 191 14 0 chr1 27439113 27439406 -254754258 + AluJo SINE Alu 1 297 -15 2260 103 0 22 chr1 27439411 27439722 -254753942 + AluSx SINE Alu 1 304 -8 1020 146 146 38 chr1 27440023 27440236 -254753428 - MER46A DNA MER2_type 0 236 1 2159 106 0 17 chr1 27440753 27441046 -254752618 - AluSx SINE Alu -24 288 1 935 300 24 8 chr1 27441105 27441352 -254752312 - MIR SINE MIR -11 251 1 211 411 0 0 chr1 27441643 27441716 -254751948 - L2 LINE L2 -540 2774 2702 2373 104 0 0 chr1 27441903 27442202 -254751462 + AluSx SINE Alu 1 299 -13 1983 147 3 7 chr1 27442229 27442528 -254751136 - AluSx SINE Alu -14 298 1 1120 232 87 32 chr1 27443004 27443230 -254750434 - MER90 LTR ERV1 -4 610 355 2327 56 52 0 chr1 27443230 27443516 -254750148 - AluY SINE Alu -10 301 1 1120 232 87 32 chr1 27443516 27443659 -254750005 - MER90 LTR ERV1 -259 355 221 234 119 119 34 chr1 27443696 27443755 -254749909 - MER90 LTR ERV1 -549 65 2 180 268 28 70 chr1 27444154 27444225 -254749439 + MIR3 SINE MIR 87 154 -54 * 362 288 6 56 chr1 27444220 27444380 -254749284 + MER5B DNA MER1_type 27 178 0 1852 188 68 113 chr1 27445209 27445911 -254747753 + LTR8A LTR ERV1 42 712 -15 791 173 0 0 chr1 27446001 27446134 -254747530 + FLAM_C SINE Alu 1 133 0 2348 102 0 3 chr1 27446138 27446441 -254747223 - AluSg SINE Alu -8 302 1 23 0 0 0 chr1 27446441 27446464 -254747200 + AT_rich Low_complexity Low_complexity 1 23 0 490 277 140 60 chr1 27446655 27446775 -254746889 + L1MC/D LINE L1 4257 4366 -1780 2577 69 0 0 chr1 27446775 27447080 -254746584 + AluY SINE Alu 1 305 -6 490 277 140 60 chr1 27447080 27447295 -254746369 + L1MC/D LINE L1 4366 4619 -1527 683 275 25 10 chr1 27447322 27447522 -254746142 + L1MC/D LINE L1 5462 5664 -2144 882 107 101 13 chr1 27447525 27447684 -254745980 + MER4A LTR ERV1 3 175 -489 1890 102 0 0 chr1 27447696 27447941 -254745723 + AluSx SINE Alu 49 293 -19 2293 90 0 29 chr1 27448002 27448314 -254745350 + AluSq SINE Alu 1 303 -10 22 0 0 0 chr1 27448326 27448348 -254745316 + AT_rich Low_complexity Low_complexity 1 22 0 2285 63 56 0 chr1 27448406 27448690 -254744974 + AluY SINE Alu 1 300 -11 1828 136 81 0 chr1 27448790 27449063 -254744601 + AluJb SINE Alu 6 300 -12 2160 129 0 3 chr1 27449322 27449633 -254744031 + AluSx SINE Alu 1 310 -2 926 219 325 17 chr1 27449644 27450134 -254743530 - MLT1G1 LTR MaLR 0 590 1 1062 286 102 7 chr1 27450242 27450501 -254743163 + LTR33 LTR ERVL 1 234 -287 1491 94 11 0 chr1 27450501 27450692 -254742972 - AluSq SINE Alu -120 193 1 1062 286 102 7 chr1 27450692 27450865 -254742799 + LTR33 LTR ERVL 234 474 -47 606 215 0 39 chr1 27450948 27451078 -254742586 - FLAM_C SINE Alu -6 127 3 1745 145 19 62 chr1 27451185 27451509 -254742155 - AluJo SINE Alu -2 310 1 2173 99 7 0 chr1 27451566 27451850 -254741814 + AluSx SINE Alu 1 286 -26 287 129 129 14 chr1 27452063 27452133 -254741531 - AluJ/FRAM SINE Alu -10 292 215 971 192 153 31 chr1 27453030 27453291 -254740373 + AluJo SINE Alu 1 293 -9 2124 85 89 0 chr1 27453382 27453663 -254740001 + AluSp SINE Alu 1 306 -7 2135 120 0 0 chr1 27453682 27453974 -254739690 + AluSx SINE Alu 1 292 -20 2034 64 16 4 chr1 27454034 27454283 -254739381 + AluY SINE Alu 1 252 -59 331 175 32 16 chr1 27454486 27454549 -254739115 - MER5A DNA MER1_type -80 109 46 2200 89 17 14 chr1 27455226 27455519 -254738145 + AluSg SINE Alu 2 295 -15 271 59 10 149 chr1 27456470 27456545 -254737119 - Alu SINE Alu -8 293 246 1605 159 91 0 chr1 27457107 27457371 -254736293 - AluJb SINE Alu -24 288 1 254 218 57 81 chr1 27457852 27457976 -254735688 - MER8 DNA MER2_type -2 237 117 811 133 33 40 chr1 27458311 27458462 -254735202 - AluSq/x SINE Alu -163 150 1 1224 181 165 0 chr1 27460760 27461020 -254732644 - AluSx SINE Alu -9 303 1 2236 124 0 0 chr1 27461277 27461583 -254732081 + AluSq SINE Alu 1 306 -7 2078 119 7 14 chr1 27461756 27462051 -254731613 - AluSx SINE Alu -18 294 2 2385 173 118 25 chr1 27462343 27462859 -254730805 - LTR6A LTR ERV1 0 564 1 1040 198 94 51 chr1 27462909 27463139 -254730525 + MLT1E2 LTR MaLR 1 220 -406 2378 96 0 6 chr1 27463139 27463451 -254730213 + AluSg SINE Alu 1 310 0 1040 198 94 51 chr1 27463451 27463758 -254729906 + MLT1E2 LTR MaLR 220 626 0 2365 92 7 0 chr1 27463775 27464079 -254729585 - AluSp SINE Alu -7 306 1 1375 159 9 120 chr1 27464303 27464637 -254729027 - AluJb SINE Alu -4 298 2 1499 220 63 35 chr1 27464806 27464943 -254728721 - LTR66 LTR ERVL -203 407 275 2435 83 0 3 chr1 27464943 27465245 -254728419 - AluSq SINE Alu -12 301 1 1499 220 63 35 chr1 27465245 27465503 -254728161 - LTR66 LTR ERVL -335 275 1 780 146 0 0 chr1 27465503 27465613 -254728051 - AluSq/x SINE Alu -198 115 6 256 232 16 96 chr1 27465715 27465771 -254727893 - L1MC/D LINE L1 -1994 5814 5772 2271 77 43 0 chr1 27465771 27466070 -254727594 - AluSp SINE Alu -1 312 1 256 232 16 96 chr1 27466070 27466138 -254727526 - L1MC/D LINE L1 -2036 5772 5700 2077 122 0 0 chr1 27466845 27467144 -254726520 - AluSg SINE Alu 0 299 1 3247 114 85 0 chr1 27467919 27468401 -254725263 - MER1A DNA MER1_type 0 527 5 1530 168 37 37 chr1 27468558 27468855 -254724809 - AluJo SINE Alu -9 303 7 1918 148 0 26 chr1 27468870 27469175 -254724489 - AluJb SINE Alu -15 297 1 257 280 128 55 chr1 27469603 27469821 -254723843 + L2 LINE L2 3080 3313 0 2036 137 3 35 chr1 27470008 27470321 -254723343 - AluJb SINE Alu -9 303 1 2124 131 3 0 chr1 27470591 27470888 -254722776 - AluSg SINE Alu -12 298 1 184 314 0 0 chr1 27471303 27471354 -254722310 + MIR SINE MIR 24 74 -188 345 217 0 0 chr1 27471408 27471468 -254722196 + Tigger3(Golem) DNA MER2_type 1 60 -2969 2217 110 10 7 chr1 27471503 27471803 -254721861 - AluSx SINE Alu -11 301 1 2202 110 7 17 chr1 27471913 27472214 -254721450 - AluSc SINE Alu -11 298 1 1710 161 48 65 chr1 27472983 27473210 -254720454 - MLT1B LTR MaLR 0 390 171 2430 73 0 13 chr1 27473210 27473510 -254720154 - AluSg SINE Alu -14 296 1 1710 161 48 65 chr1 27473510 27473679 -254719985 - MLT1B LTR MaLR -219 171 1 2563 72 0 0 chr1 27473809 27474113 -254719551 - AluY SINE Alu -6 305 2 2244 124 0 0 chr1 27474116 27474422 -254719242 - AluSx SINE Alu -6 306 1 211 376 40 10 chr1 27474481 27474582 -254719082 - L2 LINE L2 -17 3296 3193 640 223 149 0 chr1 27474687 27474862 -254718802 - L2 LINE L2 0 3313 3113 2275 187 67 41 chr1 27474870 27475405 -254718259 - MLT2B3 LTR ERVL -5 549 1 537 277 133 41 chr1 27475415 27475725 -254717939 - L2 LINE L2 -209 3104 2824 2159 97 100 29 chr1 27475725 27476065 -254717599 - THE1B LTR MaLR 0 364 1 12094 85 8 3 chr1 27476065 27477636 -254716028 - THE1B-int LTR MaLR 0 1580 2 537 277 133 41 chr1 27477636 27477866 -254715798 - L2 LINE L2 -488 2825 2513 1779 166 53 7 chr1 27477882 27478166 -254715498 - AluSx SINE Alu -15 297 1 1426 151 57 21 chr1 27478176 27478508 -254715156 + L1MC3 LINE L1 7368 7711 -74 954 160 61 28 chr1 27479619 27479831 -254713833 + MER20 DNA MER1_type 1 219 0 782 218 36 141 chr1 27480503 27480647 -254713017 - L2 LINE L2 -2 3311 3153 2126 122 10 0 chr1 27480647 27480935 -254712729 + AluSx SINE Alu 1 291 -21 782 218 36 141 chr1 27480935 27481076 -254712588 - L2 LINE L2 -160 3153 3069 2308 117 0 0 chr1 27481076 27481375 -254712289 + AluSq SINE Alu 1 299 -14 782 218 36 141 chr1 27481375 27481450 -254712214 - L2 LINE L2 -244 3069 2988 2018 138 29 0 chr1 27481458 27481807 -254711857 - MER47A DNA MER2_type -7 359 1 262 167 0 21 chr1 27481807 27481855 -254711809 - L2 LINE L2 -332 2981 2935 235 246 35 35 chr1 27481873 27481987 -254711677 - L1MC4 LINE L1 -1 8041 7928 188 279 0 0 chr1 27482662 27482705 -254710959 - L3 LINE CR1 -7 1570 1528 2036 106 71 31 chr1 27482709 27483031 -254710633 + MER1B DNA MER1_type 3 337 0 997 239 99 0 chr1 27483047 27483269 -254710395 + MIR SINE MIR 13 256 -6 373 243 113 75 chr1 27483296 27483588 -254710076 - L1ME4a LINE L1 -123 5998 5696 309 287 104 35 chr1 27483596 27483711 -254709953 + MIR3 SINE MIR 68 190 -18 337 289 211 7 chr1 27483734 27483876 -254709788 - L3 LINE CR1 -119 1458 1288 236 222 14 0 chr1 27483926 27483998 -254709666 + CT-rich Low_complexity Low_complexity 4 76 0 224 264 38 75 chr1 27484527 27484633 -254709031 + MIR SINE MIR 106 207 -55 287 87 0 0 chr1 27485428 27485474 -254708190 - L1PB4 LINE L1 0 6156 6111 1909 150 0 26 chr1 27485536 27485842 -254707822 - AluJo SINE Alu -14 298 1 180 0 0 0 chr1 27485895 27485915 -254707749 + (CCCCCA)n Simple_repeat Simple_repeat 5 24 0 229 162 29 0 chr1 27486391 27486459 -254707205 + (CAATT)n Simple_repeat Simple_repeat 4 73 0 1043 225 72 0 chr1 27486498 27486734 -254706930 - MIR SINE MIR -1 261 9 225 314 35 23 chr1 27486769 27486855 -254706809 - MIR SINE MIR -173 89 3 214 329 66 13 chr1 27486897 27487049 -254706615 - L2 LINE L2 -181 3091 2932 327 144 0 2 chr1 27487123 27487366 -254706298 + AluSx SINE Alu 1 300 0 2173 135 6 3 chr1 27487405 27487716 -254705948 + AluSx SINE Alu 1 312 0 240 221 69 28 chr1 27487951 27488096 -254705568 - Charlie7 DNA MER1_type -47 2565 2415 999 216 59 22 chr1 27488142 27488462 -254705202 - Charlie7 DNA MER1_type -1978 634 303 471 266 74 71 chr1 27488476 27488826 -254704838 + L1MC5 LINE L1 7581 7931 -30 1408 170 0 64 chr1 27488841 27489123 -254704541 + AluJo SINE Alu 33 296 -16 22 0 0 0 chr1 27489152 27489174 -254704490 + AT_rich Low_complexity Low_complexity 1 22 0 2424 93 0 3 chr1 27489180 27489491 -254704173 + AluY SINE Alu 1 310 -1 1071 178 5 0 chr1 27489718 27489903 -254703761 + MER5A DNA MER1_type 4 189 0 559 244 125 6 chr1 27489903 27490063 -254703601 + MIR SINE MIR 36 214 -48 2437 62 10 0 chr1 27490080 27490369 -254703295 - AluSp SINE Alu -21 292 1 288 276 47 16 chr1 27490371 27490498 -254703166 - Charlie7 DNA MER1_type -2481 131 1 213 249 240 40 chr1 27490518 27490743 -254702921 - L2 LINE L2 -729 2585 2316 720 192 38 43 chr1 27490761 27490978 -254702686 - MLT1H LTR MaLR -1 550 322 195 280 40 0 chr1 27491568 27491618 -254702046 - MIR SINE MIR -87 121 70 399 338 14 14 chr1 27491629 27491771 -254701893 - MIR SINE MIR -10 252 111 759 229 137 5 chr1 27491857 27492062 -254701602 + MIR SINE MIR 2 233 -29 2418 98 0 0 chr1 27492704 27493001 -254700663 - AluSx SINE Alu -15 297 1 1898 123 4 18 chr1 27493001 27493315 -254700349 - AluJo SINE Alu -12 300 27 503 281 22 14 chr1 27493392 27493531 -254700133 - MIR3 SINE MIR -14 194 55 392 236 210 0 chr1 27494446 27494603 -254699061 - MIR SINE MIR -3 259 70 1819 105 8 8 chr1 27494625 27494892 -254698772 - AluSg SINE Alu -9 301 35 1516 111 134 19 chr1 27495036 27495298 -254698366 + AluSg SINE Alu 1 292 -18 1884 133 11 0 chr1 27495424 27495710 -254697954 + AluSq SINE Alu 12 300 -13 787 244 6 0 chr1 27495728 27495896 -254697768 + MIR SINE MIR 93 261 -1 442 278 0 9 chr1 27495895 27496003 -254697661 - MIR SINE MIR -140 122 16 * 239 292 21 0 chr1 27496252 27496348 -254697316 + MIR SINE MIR 56 153 -55 637 262 24 0 chr1 27496448 27496616 -254697048 - MIR SINE MIR 0 262 91 481 121 60 0 chr1 27497028 27497111 -254696553 - MER53 DNA DNA -79 110 23 * 492 105 93 0 chr1 27497037 27497123 -254696541 + MER53 DNA DNA 96 189 0 2274 87 3 0 chr1 27497298 27497597 -254696067 - AluSp SINE Alu -13 300 1 638 240 6 27 chr1 27497704 27497889 -254695775 + L1ME3 LINE L1 5915 6099 -67 460 289 133 12 chr1 27498074 27498240 -254695424 - MIR SINE MIR -16 246 61 1761 167 3 3 chr1 27498370 27498658 -254695006 + AluJb SINE Alu 1 288 -24 2419 57 0 0 chr1 27498668 27498967 -254694697 + AluY SINE Alu 1 299 -12 2051 129 3 0 chr1 27498975 27499277 -254694387 + AluSx SINE Alu 1 303 -9 183 156 0 0 chr1 27499310 27499342 -254694322 + (CA)n Simple_repeat Simple_repeat 2 33 0 1698 173 0 3 chr1 27499886 27500186 -254693478 - AluSx SINE Alu -13 299 1 1589 166 4 4 chr1 27500194 27500459 -254693205 - AluJb SINE Alu -25 287 23 1046 169 0 16 chr1 27500459 27500643 -254693021 - AluJo SINE Alu -131 181 1 645 293 71 10 chr1 27500725 27500923 -254692741 - MIR SINE MIR -52 210 1 220 264 104 100 chr1 27501200 27501360 -254692304 + MIR SINE MIR 18 181 -81 1812 158 0 0 chr1 27501360 27501658 -254692006 - AluSx SINE Alu -14 298 1 220 264 104 100 chr1 27501658 27501728 -254691936 + MIR SINE MIR 181 249 -13 205 219 94 31 chr1 27501838 27501902 -254691762 + L2 LINE L2 3016 3083 -189 320 278 172 18 chr1 27502162 27502329 -254691335 - MIR3 SINE MIR -63 145 9 278 243 57 0 chr1 27502533 27502603 -254691061 - MIR SINE MIR -124 138 65 333 47 0 0 chr1 27502714 27502757 -254690907 + (TGAA)n Simple_repeat Simple_repeat 1 43 0 939 146 19 78 chr1 27503047 27503252 -254690412 + AluJo SINE Alu 22 214 -98 263 182 0 0 chr1 27503253 27503297 -254690367 + FLAM_A SINE Alu 80 123 -10 321 89 0 0 chr1 27503307 27503352 -254690312 + (CAGA)n Simple_repeat Simple_repeat 3 47 0 2167 112 0 10 chr1 27503352 27503665 -254689999 + AluSq SINE Alu 2 311 -2 471 258 17 0 chr1 27504006 27504126 -254689538 - MIR3 SINE MIR -37 171 50 689 194 73 11 chr1 27504132 27504321 -254689343 + MIR SINE MIR 5 202 -60 3259 249 150 26 chr1 27504380 27505514 -254688150 - L2 LINE L2 -528 2786 1512 30 45 0 0 chr1 27505514 27505558 -254688106 + AT_rich Low_complexity Low_complexity 1 44 0 845 250 150 33 chr1 27506832 27507222 -254686442 + L1MC4a LINE L1 5191 5534 -799 2393 66 7 0 chr1 27507222 27507525 -254686139 - AluY SINE Alu -6 305 1 845 250 150 33 chr1 27507525 27507602 -254686062 + L1MC4a LINE L1 5534 5601 -732 2348 73 3 0 chr1 27507602 27507902 -254685762 + AluSp SINE Alu 1 301 -12 2287 97 0 0 chr1 27507912 27508211 -254685453 + AluSg SINE Alu 1 299 -11 845 250 150 33 chr1 27508211 27508393 -254685271 + L1MC4a LINE L1 5456 5615 -718 292 254 164 27 chr1 27508694 27508804 -254684860 - MIR3 SINE MIR -7 201 77 2045 104 3 77 chr1 27508946 27509282 -254684382 - AluSx SINE Alu -1 311 1 297 236 38 57 chr1 27509979 27510085 -254683579 - MIR3 SINE MIR -3 205 102 599 274 246 6 chr1 27510503 27510820 -254682844 + L3 LINE CR1 947 1339 -238 2209 104 0 16 chr1 27510853 27511170 -254682494 - AluSx SINE Alu 0 312 1 700 108 17 42 chr1 27511263 27511383 -254682281 + FLAM_A SINE Alu 25 141 -1 685 319 66 4 chr1 27511413 27511639 -254682025 + L3 LINE CR1 1331 1570 -7 2102 131 0 0 chr1 27512419 27512724 -254680940 - AluY SINE Alu -6 305 1 2595 172 38 16 chr1 27513099 27513604 -254680060 + Charlie1b DNA MER1_type 1 516 -7 21 36 0 0 chr1 27514149 27514177 -254679487 + AT_rich Low_complexity Low_complexity 1 28 0 318 309 109 39 chr1 27515153 27515383 -254678281 + L1M2 LINE L1 1630 1875 -4974 1487 160 28 18 chr1 27515592 27515874 -254677790 - AluJo SINE Alu -14 298 14 1762 163 51 0 chr1 27516035 27516330 -254677334 + AluJb SINE Alu 1 310 -2 705 147 0 77 chr1 27516515 27516624 -254677040 + FLAM_A SINE Alu 8 107 -204 1922 122 0 24 chr1 27516624 27516937 -254676727 - AluSx SINE Alu 0 306 1 705 147 0 77 chr1 27516937 27516968 -254676696 + FLAM_A SINE Alu 107 139 -172 331 286 231 7 chr1 27518744 27518891 -254674773 + MER5A DNA MER1_type 10 189 0 294 270 122 78 chr1 27519139 27519422 -254674242 + L2 LINE L2 3005 3303 -10 2138 80 28 7 chr1 27519422 27519711 -254673953 + AluSq SINE Alu 1 295 -18 294 270 122 78 chr1 27519711 27519723 -254673941 + L2 LINE L2 3303 3313 0 404 165 13 0 chr1 27520029 27520108 -254673556 + Charlie1 DNA MER1_type 2454 2533 -228 2291 96 3 0 chr1 27520116 27520419 -254673245 - AluSx SINE Alu -7 305 2 641 145 23 87 chr1 27520421 27520471 -254673193 + Charlie1 DNA MER1_type 2590 2642 -119 1631 173 0 55 chr1 27520471 27520801 -254672863 - AluJo SINE Alu 0 312 1 641 145 23 87 chr1 27520801 27520875 -254672789 + Charlie1 DNA MER1_type 2642 2703 -58 2212 95 10 0 chr1 27520875 27521170 -254672494 - AluSp SINE Alu -15 298 1 641 145 23 87 chr1 27521170 27521216 -254672448 + Charlie1 DNA MER1_type 2703 2750 -11 991 185 0 0 chr1 27521487 27521671 -254671993 - AluJo SINE Alu -6 306 123 189 0 0 0 chr1 27521673 27521694 -254671970 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 322 94 0 94 chr1 27521727 27521791 -254671873 + L1MD3 LINE L1 7928 7985 -10 2134 104 19 7 chr1 27521978 27522286 -254671378 - AluSx SINE Alu 0 312 1 292 276 142 0 chr1 27522424 27522558 -254671106 + MIR SINE MIR 110 262 0 275 204 0 0 chr1 27522904 27522948 -254670716 + AluJ/monomer SINE Alu 1 44 -258 1806 146 24 3 chr1 27522974 27523262 -254670402 - AluJo SINE Alu -18 294 1 1442 184 0 70 chr1 27523454 27523770 -254669894 + AluJo SINE Alu 5 298 -14 203 267 200 11 chr1 27526421 27526511 -254667153 + L2 LINE L2 3188 3294 -19 256 246 104 82 chr1 27527136 27527270 -254666394 - MIR3 SINE MIR -63 145 9 338 210 111 0 chr1 27528390 27528471 -254665193 + L2 LINE L2 3224 3313 0 21 36 0 0 chr1 27529442 27529470 -254664194 + GC_rich Low_complexity Low_complexity 1 28 0 41 82 0 0 chr1 27529502 27529599 -254664065 + GC_rich Low_complexity Low_complexity 1 97 0 207 151 38 19 chr1 27529834 27529887 -254663777 + (CCG)n Simple_repeat Simple_repeat 3 56 0 204 40 0 0 chr1 27530836 27530861 -254662803 + (CCGGG)n Simple_repeat Simple_repeat 1 25 0 351 298 0 0 chr1 27530928 27531022 -254662642 - MIR SINE MIR -13 249 156 371 293 101 72 chr1 27531056 27531374 -254662290 - L1ME4a LINE L1 -1 6120 5794 1582 52 0 5 chr1 27531454 27531648 -254662016 + AluY SINE Alu 1 193 -118 198 0 0 0 chr1 27531663 27531685 -254661979 + (A)n Simple_repeat Simple_repeat 1 22 0 267 221 162 0 chr1 27532179 27532247 -254661417 + MIR SINE MIR 50 128 -134 219 326 41 31 chr1 27532937 27533035 -254660629 + MIR SINE MIR 33 131 -77 270 179 224 0 chr1 27533081 27533148 -254660516 - MIR SINE MIR -62 146 65 198 182 159 0 chr1 27533494 27533538 -254660126 - MIR SINE MIR -119 143 93 2137 118 0 0 chr1 27533836 27534132 -254659532 - AluSx SINE Alu -16 296 1 968 207 77 9 chr1 27534261 27534483 -254659181 - MIR SINE MIR -21 241 5 375 241 119 40 chr1 27534484 27534737 -254658927 + L1ME4a LINE L1 5823 6095 -26 716 240 113 9 chr1 27534756 27534977 -254658687 - MIR SINE MIR -1 261 18 189 307 68 11 chr1 27535316 27535404 -254658260 - MIR SINE MIR -74 188 96 677 298 87 8 chr1 27535409 27535651 -254658013 + MIR SINE MIR 2 262 0 * 1078 211 31 123 chr1 27535646 27535790 -254657874 - L2 LINE L2 -2 3311 3155 1969 128 10 0 chr1 27535790 27536078 -254657586 + AluSx SINE Alu 1 291 -21 1078 211 31 123 chr1 27536078 27536219 -254657445 - L2 LINE L2 -158 3155 3003 2087 128 0 0 chr1 27536219 27536523 -254657141 + AluSq SINE Alu 1 304 -9 1078 211 31 123 chr1 27536523 27536602 -254657062 - L2 LINE L2 -310 3003 2986 2381 150 0 0 chr1 27536602 27536968 -254656696 - MER47A DNA MER2_type 0 366 1 1078 211 31 123 chr1 27536968 27537014 -254656650 - L2 LINE L2 -327 2986 2937 244 254 35 35 chr1 27537035 27537149 -254656515 - L1MC4 LINE L1 -1 8041 7928 192 279 0 0 chr1 27537824 27537867 -254655797 - L3 LINE CR1 -7 1570 1528 1976 106 71 31 chr1 27537871 27538193 -254655471 + MER1B DNA MER1_type 3 337 0 994 242 94 0 chr1 27538209 27538432 -254655232 + MIR SINE MIR 13 256 -6 382 248 129 73 chr1 27538448 27538751 -254654913 - L1ME4a LINE L1 -106 6015 5696 305 275 110 37 chr1 27538765 27538874 -254654790 + MIR3 SINE MIR 74 190 -18 348 282 161 13 chr1 27538897 27539046 -254654618 - L3 LINE CR1 -119 1458 1288 287 192 14 0 chr1 27539096 27539169 -254654495 + CT-rich Low_complexity Low_complexity 3 76 0 235 255 38 75 chr1 27539701 27539807 -254653857 + MIR SINE MIR 106 207 -55 298 50 0 0 chr1 27540601 27540641 -254653023 - L1PB4 LINE L1 0 6156 6117 1782 152 0 13 chr1 27540709 27541011 -254652653 - AluJo SINE Alu -14 298 1 180 0 0 0 chr1 27541064 27541084 -254652580 + (CCCCCA)n Simple_repeat Simple_repeat 5 24 0 250 147 29 0 chr1 27541560 27541628 -254652036 + (CAATT)n Simple_repeat Simple_repeat 4 73 0 1082 212 74 0 chr1 27541667 27541903 -254651761 - MIR SINE MIR -1 261 9 259 308 84 19 chr1 27541919 27542026 -254651638 - MIR SINE MIR -146 116 3 233 314 45 58 chr1 27542068 27542224 -254651440 - L2 LINE L2 -181 3091 2938 333 128 0 2 chr1 27542304 27542547 -254651117 + AluSx SINE Alu 1 302 0 2173 132 6 3 chr1 27542579 27542890 -254650774 + AluSx SINE Alu 1 312 0 240 211 143 8 chr1 27543125 27543258 -254650406 - Charlie7 DNA MER1_type -47 2565 2415 1000 219 60 19 chr1 27543304 27543623 -254650041 - Charlie7 DNA MER1_type -1978 634 303 504 261 71 74 chr1 27543637 27543989 -254649675 + L1MC5 LINE L1 7581 7931 -30 1421 169 0 67 chr1 27544003 27544287 -254649377 + AluJo SINE Alu 33 297 -15 22 0 0 0 chr1 27544316 27544338 -254649326 + AT_rich Low_complexity Low_complexity 1 22 0 2492 93 0 0 chr1 27544344 27544655 -254649009 + AluY SINE Alu 1 311 0 1111 168 5 0 chr1 27544883 27545068 -254648596 + MER5A DNA MER1_type 4 189 0 559 244 125 6 chr1 27545068 27545228 -254648436 + MIR SINE MIR 36 214 -48 2513 55 10 0 chr1 27545245 27545536 -254648128 - AluSp SINE Alu -19 294 1 288 276 47 16 chr1 27545538 27545665 -254647999 - Charlie7 DNA MER1_type -2481 131 1 211 261 234 40 chr1 27545685 27545911 -254647753 - L2 LINE L2 -729 2585 2316 734 186 38 43 chr1 27545929 27546146 -254647518 - MLT1H LTR MaLR -1 550 322 195 280 40 0 chr1 27546736 27546786 -254646878 - MIR SINE MIR -87 121 70 397 338 14 14 chr1 27546797 27546939 -254646725 - MIR SINE MIR -10 252 111 737 234 137 5 chr1 27547025 27547230 -254646434 + MIR SINE MIR 2 233 -29 2377 90 3 0 chr1 27547874 27548164 -254645500 - AluSx SINE Alu -21 291 1 2074 147 3 10 chr1 27548164 27548476 -254645188 - AluJo SINE Alu -2 310 1 489 288 22 14 chr1 27548553 27548692 -254644972 - MIR3 SINE MIR -14 194 55 338 286 119 0 chr1 27549607 27549733 -254643931 - MIR SINE MIR -3 259 119 1960 94 0 8 chr1 27549781 27550063 -254643601 - AluSg SINE Alu 0 310 35 1595 126 133 19 chr1 27550207 27550470 -254643194 + AluSg SINE Alu 1 293 -17 910 302 36 4 chr1 27550649 27550710 -254642954 + MIR SINE MIR 6 64 -198 2321 116 0 0 chr1 27550710 27551011 -254642653 + AluSq SINE Alu 1 301 -12 910 302 36 4 chr1 27551011 27551197 -254642467 + MIR SINE MIR 64 261 -1 410 311 0 8 chr1 27551196 27551318 -254642346 - MIR SINE MIR -140 122 2 * 235 302 21 0 chr1 27551553 27551649 -254642015 + MIR SINE MIR 56 153 -55 655 256 24 0 chr1 27551749 27551917 -254641747 - MIR SINE MIR 0 262 91 484 143 48 0 chr1 27552329 27552413 -254641251 - MER53 DNA DNA -79 110 23 * 496 115 81 0 chr1 27552338 27552425 -254641239 + MER53 DNA DNA 96 189 0 2385 101 3 0 chr1 27552595 27552901 -254640763 - AluSp SINE Alu -6 307 1 583 239 7 27 chr1 27553004 27553188 -254640476 + L1ME3 LINE L1 5913 6089 -75 483 283 133 12 chr1 27553388 27553554 -254640110 - MIR SINE MIR -16 246 61 1940 156 3 3 chr1 27553684 27553972 -254639692 + AluJb SINE Alu 1 288 -24 2442 79 0 0 chr1 27553982 27554286 -254639378 + AluY SINE Alu 1 304 -7 2243 129 0 0 chr1 27554294 27554597 -254639067 + AluSx SINE Alu 1 303 -9 342 138 0 0 chr1 27554630 27554688 -254638976 + (CA)n Simple_repeat Simple_repeat 2 59 0 2007 151 0 3 chr1 27555232 27555536 -254638128 - AluSx SINE Alu -9 303 1 1655 175 4 4 chr1 27555546 27555809 -254637855 - AluJb SINE Alu -27 285 23 1148 153 0 42 chr1 27555809 27555998 -254637666 - AluJo SINE Alu -131 181 1 656 308 66 5 chr1 27556080 27556278 -254637386 - MIR SINE MIR -52 210 1 258 282 113 57 chr1 27556555 27556679 -254636985 + MIR SINE MIR 18 148 -114 2250 125 0 0 chr1 27556716 27557021 -254636643 - AluSx SINE Alu -7 305 1 208 219 94 31 chr1 27557201 27557265 -254636399 + L2 LINE L2 3016 3083 -189 326 278 172 18 chr1 27557528 27557695 -254635969 - MIR3 SINE MIR -63 145 9 283 243 57 0 chr1 27557899 27557969 -254635695 - MIR SINE MIR -124 138 65 258 32 0 0 chr1 27558081 27558112 -254635552 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 999 153 19 77 chr1 27558402 27558611 -254635053 + AluJo SINE Alu 22 218 -94 231 158 0 0 chr1 27558614 27558652 -254635012 + Alu SINE Alu 86 123 -10 563 120 0 20 chr1 27558652 27558730 -254634934 + (TAGA)n Simple_repeat Simple_repeat 1 78 -20 2297 128 0 0 chr1 27558730 27559043 -254634621 + AluSq SINE Alu 1 313 0 563 120 0 20 chr1 27559043 27559064 -254634600 + (TAGA)n Simple_repeat Simple_repeat 78 98 0 464 267 17 0 chr1 27559385 27559505 -254634159 - MIR3 SINE MIR -37 171 50 663 207 72 11 chr1 27559511 27559703 -254633961 + MIR SINE MIR 5 205 -57 3305 247 152 23 chr1 27559759 27560888 -254632776 - L2 LINE L2 -528 2786 1512 36 40 0 0 chr1 27560888 27560938 -254632726 + AT_rich Low_complexity Low_complexity 1 50 0 784 301 92 40 chr1 27562199 27562700 -254630964 - L2 LINE L2 -1790 1524 998 754 208 13 103 chr1 27562689 27562943 -254630721 + MIR SINE MIR 16 241 -21 * 707 271 164 18 chr1 27562996 27563380 -254630284 - L2 LINE L2 -2387 927 488 2301 110 0 0 chr1 27563393 27563692 -254629972 - AluSq SINE Alu -14 299 1 3170 169 69 36 chr1 27563746 27563769 -254629895 - L1MC4 LINE L1 -190 7852 7831 2261 124 7 0 chr1 27563769 27564075 -254629589 - AluSx SINE Alu -4 308 1 3170 169 69 36 chr1 27564075 27564089 -254629575 - L1MC4 LINE L1 -211 7831 7819 1663 155 106 29 chr1 27564089 27564264 -254629400 + THE1C LTR MaLR 1 161 -214 204 40 0 0 chr1 27564264 27564289 -254629375 + (TC)n Simple_repeat Simple_repeat 1 25 0 1663 155 106 29 chr1 27564289 27564461 -254629203 + THE1C LTR MaLR 161 375 0 3170 169 69 36 chr1 27564461 27565203 -254628461 - L1MC4 LINE L1 -223 7819 7046 765 288 100 42 chr1 27566203 27566533 -254627131 - L2 LINE L2 0 3313 2965 681 214 22 39 chr1 27566554 27566618 -254627046 - MER97a DNA MER1_type? -715 179 115 2198 103 3 0 chr1 27566618 27566932 -254626732 + AluSx SINE Alu 1 312 0 681 214 22 39 chr1 27566932 27567045 -254626619 - MER97a DNA MER1_type? -779 115 5 1386 225 37 42 chr1 27567096 27567267 -254626397 - L2 LINE L2 -426 2888 2718 2184 120 7 0 chr1 27567267 27567568 -254626096 - AluSx SINE Alu -9 303 1 1386 225 37 42 chr1 27567568 27567774 -254625890 - L2 LINE L2 -596 2718 2513 2098 147 27 0 chr1 27568044 27568344 -254625320 + AluJo SINE Alu 1 308 -4 2048 95 4 0 chr1 27568346 27568608 -254625056 + AluSx SINE Alu 1 263 -49 2358 103 0 6 chr1 27569420 27569732 -254623932 + AluSx SINE Alu 1 310 -2 220 250 0 17 chr1 27569762 27569822 -254623842 + MIR SINE MIR 88 146 -62 308 145 60 145 chr1 27570449 27570566 -254623098 + L1MEd LINE L1 724 830 -5289 360 249 3 0 chr1 27570569 27570647 -254623017 + MIR SINE MIR 76 145 -63 486 237 8 46 chr1 27571198 27571329 -254622335 - MIR SINE MIR 0 262 137 889 165 0 0 chr1 27571333 27571466 -254622198 + FLAM_C SINE Alu 1 133 0 611 157 23 3 chr1 27572788 27572801 -254620863 + L1MA4 LINE L1 5767 5778 -408 2024 111 54 0 chr1 27572801 27573080 -254620584 + AluSx SINE Alu 1 294 -18 611 157 23 3 chr1 27573080 27573201 -254620463 + L1MA4 LINE L1 5778 5901 -285 251 71 24 0 chr1 27573424 27573466 -254620198 + (TTCA)n Simple_repeat Simple_repeat 1 43 0 400 290 17 51 chr1 27573554 27573730 -254619934 - L2 LINE L2 -194 3078 2909 1232 109 0 12 chr1 27573850 27574027 -254619637 - AluSg/x SINE Alu 0 306 128 333 0 0 0 chr1 27574027 27574064 -254619600 + (TG)n Simple_repeat Simple_repeat 2 38 0 2115 99 0 7 chr1 27574065 27574368 -254619296 - AluY SINE Alu 0 301 1 894 165 24 0 chr1 27574597 27574767 -254618897 + MER20 DNA MER1_type 29 202 -17 562 238 191 0 chr1 27574785 27574932 -254618732 + MER5A DNA MER1_type 9 183 -6 408 207 87 73 chr1 27575537 27575687 -254617977 + MIR SINE MIR 67 218 -44 353 293 147 6 chr1 27575977 27576134 -254617530 - MIR SINE MIR -15 247 69 293 330 9 36 chr1 27576345 27576457 -254617207 + MIR3 SINE MIR 50 158 -50 370 320 77 0 chr1 27576531 27576687 -254616977 - Charlie8 DNA MER1_type -2205 212 45 825 171 43 43 chr1 27576728 27576915 -254616749 + MER5A DNA MER1_type 3 189 0 870 230 29 24 chr1 27576943 27577152 -254616512 + MER63A DNA MER1_type 1 210 0 401 290 57 0 chr1 27577281 27577422 -254616242 + MIR SINE MIR 33 185 -58 796 241 155 24 chr1 27577699 27578113 -254615551 - MER113 DNA MER1_type? -50 471 4 306 315 54 27 chr1 27578123 27578272 -254615392 + MIR SINE MIR 31 183 -79 290 241 81 0 chr1 27578467 27578554 -254615110 - L1ME3A LINE L1 -18 6152 6059 366 169 84 0 chr1 27578556 27578639 -254615025 - L1ME3A LINE L1 -159 6011 5922 1090 212 125 39 chr1 27578643 27579002 -254614662 + MSTD LTR MaLR 5 394 -2 4423 222 206 42 chr1 27579006 27579149 -254614515 + MSTD-int LTR MaLR 2 120 -1615 2300 122 0 3 chr1 27579149 27579461 -254614203 + AluSq SINE Alu 1 311 -2 4423 222 206 42 chr1 27579461 27579835 -254613829 + MSTD-int LTR MaLR 120 431 -1304 1506 61 0 0 chr1 27579835 27580015 -254613649 + AluY SINE Alu 130 309 -2 4423 222 206 42 chr1 27580015 27580931 -254612733 + MSTD-int LTR MaLR 431 1671 -64 1905 154 7 17 chr1 27580935 27581234 -254612430 + AluJo SINE Alu 7 302 -10 1226 155 0 0 chr1 27581236 27581410 -254612254 + AluJo/FRAM SINE Alu 135 308 -4 405 0 0 0 chr1 27581410 27581455 -254612209 + (TA)n Simple_repeat Simple_repeat 1 45 0 270 123 185 0 chr1 27581455 27581520 -254612144 + MSTD-int LTR MaLR 1659 1735 0 1211 224 115 33 chr1 27581520 27581886 -254611778 + MSTD LTR MaLR 1 396 0 451 148 40 30 chr1 27581886 27581987 -254611677 - L1ME3A LINE L1 -244 5926 5825 239 244 67 52 chr1 27582068 27582203 -254611461 - MER74B LTR ERVL -71 551 415 257 216 0 0 chr1 27582368 27582419 -254611245 - MER74B LTR ERVL -569 53 3 1521 221 96 24 chr1 27582432 27582983 -254610681 - L1ME3A LINE L1 -367 5803 5190 1849 158 10 39 chr1 27582983 27583293 -254610371 - AluSx SINE Alu -11 301 1 1521 221 96 24 chr1 27583293 27583412 -254610252 - L1ME3A LINE L1 -980 5190 5081 377 96 0 6 chr1 27583417 27583656 -254610008 + AluSc SINE Alu 7 292 -7 237 203 62 16 chr1 27583743 27583807 -254609857 - L2 LINE L2 -1 3271 3205 2446 94 0 0 chr1 27583966 27584274 -254609390 - AluY SINE Alu -3 308 1 235 274 32 53 chr1 27584308 27584403 -254609261 - MIR SINE MIR -66 196 104 2117 121 50 0 chr1 27584816 27585113 -254608551 + AluSx SINE Alu 1 312 0 537 221 2 10 chr1 27585123 27585239 -254608425 - MIR SINE MIR -77 131 15 309 289 119 25 chr1 27585665 27585824 -254607840 - MIR3 SINE MIR -7 201 28 1677 263 50 12 chr1 27585898 27586410 -254607254 - L2 LINE L2 -5 3308 2778 1793 111 4 0 chr1 27586519 27586753 -254606911 + AluSq SINE Alu 1 235 -78 2085 119 41 0 chr1 27586786 27587079 -254606585 + AluSx SINE Alu 1 305 -7 426 245 28 19 chr1 27587208 27587314 -254606350 + MIR3 SINE MIR 83 189 -19 248 182 0 0 chr1 27587543 27587587 -254606077 + MER53 DNA DNA 146 189 0 1774 160 24 11 chr1 27587816 27588103 -254605561 + AluJb SINE Alu 11 301 -11 2508 67 3 0 chr1 27588371 27588669 -254604995 - AluSp SINE Alu -14 299 1 1914 176 0 7 chr1 27589234 27589535 -254604129 + AluJb SINE Alu 1 299 -13 2016 121 3 28 chr1 27589851 27590185 -254603479 + AluSx SINE Alu 1 327 0 260 272 114 76 chr1 27590760 27590868 -254602796 - MIR3 SINE MIR -5 203 86 2345 101 0 7 chr1 27590868 27591176 -254602488 + AluSx SINE Alu 1 306 -6 260 272 114 76 chr1 27591176 27591225 -254602439 - MIR3 SINE MIR -122 86 40 225 265 0 15 chr1 27591577 27591645 -254602019 - MIR3 SINE MIR -130 78 12 246 174 0 0 chr1 27591751 27591797 -254601867 + CT-rich Low_complexity Low_complexity 1 46 0 955 252 8 59 chr1 27591798 27591846 -254601818 - L1ME1 LINE L1 -6 6172 6123 2236 114 0 0 chr1 27591846 27592143 -254601521 + AluSx SINE Alu 1 297 -15 955 252 8 59 chr1 27592143 27592162 -254601502 - L1ME1 LINE L1 -55 6123 6105 4279 79 9 2 chr1 27592162 27592722 -254600942 - LTR6A LTR ERV1 0 564 1 955 252 8 59 chr1 27592722 27592918 -254600746 - L1ME1 LINE L1 -73 6105 5942 1887 159 0 7 chr1 27592918 27593213 -254600451 - AluJb SINE Alu -19 293 1 955 252 8 59 chr1 27593213 27593329 -254600335 - L1ME1 LINE L1 -236 5942 5822 191 271 125 10 chr1 27593461 27593557 -254600107 - L2 LINE L2 0 3313 3207 1474 264 50 12 chr1 27593773 27594275 -254599389 - L2 LINE L2 -6 3307 2788 1545 124 44 0 chr1 27594393 27594618 -254599046 + AluSq SINE Alu 1 235 -78 2162 130 7 0 chr1 27594658 27594957 -254598707 + AluSx SINE Alu 1 301 -11 399 262 28 9 chr1 27595088 27595195 -254598469 + MIR3 SINE MIR 81 189 -19 265 182 0 0 chr1 27595423 27595467 -254598197 + MER53 DNA DNA 146 189 0 1795 153 25 0 chr1 27595690 27595971 -254597693 + AluJb SINE Alu 11 298 -14 2420 83 3 0 chr1 27596242 27596544 -254597120 - AluSp SINE Alu -10 303 1 1830 179 0 7 chr1 27597106 27597407 -254596257 + AluJb SINE Alu 1 299 -13 2087 113 0 31 chr1 27597725 27598061 -254595603 + AluSx SINE Alu 1 327 0 217 280 149 0 chr1 27598634 27598741 -254594923 - MIR3 SINE MIR -5 203 81 2254 114 0 0 chr1 27598742 27599039 -254594625 + AluSx SINE Alu 1 297 -15 413 271 0 39 chr1 27599040 27599058 -254594606 - L1MA10 LINE L1 -42 6292 5712 4501 76 2 0 chr1 27599058 27599621 -254594043 - LTR6A LTR ERV1 0 564 1 939 250 14 45 chr1 27599621 27599817 -254593847 - L1ME1 LINE L1 -47 6119 5942 1877 163 0 7 chr1 27599817 27600112 -254593552 - AluJb SINE Alu -19 293 1 939 250 14 45 chr1 27600112 27600245 -254593419 - L1ME1 LINE L1 -224 5942 5806 220 311 27 14 chr1 27600361 27600435 -254593229 - L2 LINE L2 0 3313 3239 876 184 6 19 chr1 27600493 27600651 -254593013 + FRAM SINE Alu 1 156 -10 236 245 174 31 chr1 27600817 27600915 -254592749 + MIR SINE MIR 92 203 -59 460 284 32 42 chr1 27601044 27601115 -254592549 - MIR SINE MIR -44 218 148 2109 130 0 13 chr1 27601115 27601415 -254592249 + AluSx SINE Alu 3 298 -14 460 284 32 42 chr1 27601415 27601533 -254592131 - MIR SINE MIR -114 148 31 2159 122 14 0 chr1 27602127 27602423 -254591241 - AluSx SINE Alu -12 300 1 2091 112 0 4 chr1 27602587 27602865 -254590799 + AluSx SINE Alu 20 296 -16 2227 113 0 0 chr1 27603528 27603829 -254589835 + AluSx SINE Alu 1 301 -11 1078 113 21 77 chr1 27603836 27604030 -254589634 + AluSg/x SINE Alu 125 307 -5 442 183 87 0 chr1 27604096 27604200 -254589464 + MIR SINE MIR 33 145 -63 329 248 261 0 chr1 27604216 27604369 -254589295 + MIR SINE MIR 19 211 -51 636 262 165 61 chr1 27604494 27604562 -254589102 + L3 LINE CR1 1209 1269 -308 2134 97 16 38 chr1 27604562 27604882 -254588782 + AluSq SINE Alu 1 313 0 636 262 165 61 chr1 27604882 27605141 -254588523 + L3 LINE CR1 1269 1570 -7 368 217 0 0 chr1 27605493 27605553 -254588111 + Tigger3(Golem) DNA MER2_type 1 60 -2969 2274 112 10 3 chr1 27605590 27605895 -254587769 - AluSx SINE Alu -5 307 1 2214 103 7 17 chr1 27606005 27606307 -254587357 - AluSc SINE Alu -10 299 1 1687 161 48 65 chr1 27607078 27607305 -254586359 - MLT1B LTR MaLR 0 390 171 2523 71 0 13 chr1 27607305 27607615 -254586049 - AluSg SINE Alu -4 306 1 1687 161 48 65 chr1 27607615 27607784 -254585880 - MLT1B LTR MaLR -219 171 1 1373 88 0 0 chr1 27607914 27608085 -254585579 - AluY SINE Alu -8 303 133 2714 36 0 3 chr1 27608085 27608389 -254585275 - AluY SINE Alu -7 304 2 2107 125 14 0 chr1 27608392 27608687 -254584977 - AluSx SINE Alu -13 299 1 523 240 149 0 chr1 27608954 27609129 -254584535 - L2 LINE L2 0 3313 3113 2421 189 67 39 chr1 27609137 27609671 -254583993 - MLT2B3 LTR ERVL -5 549 1 458 279 136 34 chr1 27609681 27609991 -254583673 - L2 LINE L2 -209 3104 2827 2073 97 103 30 chr1 27609991 27610330 -254583334 - THE1B LTR MaLR 0 364 1 11836 86 10 4 chr1 27610330 27611900 -254581764 - THE1B-int LTR MaLR 0 1580 2 458 279 136 34 chr1 27611900 27612080 -254581584 - L2 LINE L2 -485 2828 2562 1786 158 53 7 chr1 27612149 27612434 -254581230 - AluSx SINE Alu -14 298 1 1500 151 60 21 chr1 27612444 27612775 -254580889 + L1MC3 LINE L1 7368 7711 -74 912 160 61 28 chr1 27613888 27614100 -254579564 + MER20 DNA MER1_type 1 219 0 27 0 0 0 chr1 27615405 27615432 -254578232 + AT_rich Low_complexity Low_complexity 1 27 0 2298 110 3 0 chr1 27616276 27616586 -254577078 - AluSx SINE Alu -1 311 1 512 94 0 0 chr1 27617321 27617385 -254576279 + U6 snRNA snRNA 1 64 -43 22 0 0 0 chr1 27617543 27617565 -254576099 + AT_rich Low_complexity Low_complexity 1 22 0 2218 65 44 7 chr1 27617602 27617896 -254575768 - AluY SINE Alu -6 305 1 1035 89 0 0 chr1 27617905 27618029 -254575635 - AluSp SINE Alu -189 124 1 1608 157 20 56 chr1 27618050 27618356 -254575308 - AluJb SINE Alu -17 295 1 234 270 18 63 chr1 27619516 27619627 -254574037 - HAL1 LINE L1 -8 2499 2394 689 279 158 35 chr1 27619716 27619920 -254573744 - L2 LINE L2 -4 3309 3131 798 138 49 0 chr1 27619920 27620043 -254573621 - FLAM_C SINE Alu -4 129 1 689 279 158 35 chr1 27620043 27620316 -254573348 - L2 LINE L2 -182 3131 2763 1708 164 38 17 chr1 27620316 27620603 -254573061 + AluJb SINE Alu 1 293 -19 689 279 158 35 chr1 27620603 27620696 -254572968 - L2 LINE L2 -550 2763 2683 844 147 0 22 chr1 27620895 27621031 -254572633 - FLAM_C SINE Alu 0 133 1 198 91 0 0 chr1 27621051 27621084 -254572580 + (T)n Simple_repeat Simple_repeat 1 33 0 278 241 169 55 chr1 27621188 27621424 -254572240 - HAL1 LINE L1 -431 2076 1814 186 43 0 0 chr1 27621469 27621492 -254572172 + (T)n Simple_repeat Simple_repeat 1 23 0 2130 108 0 23 chr1 27621514 27621650 -254572014 + AluSx SINE Alu 1 139 -173 2271 104 0 0 chr1 27621650 27621948 -254571716 + AluY SINE Alu 1 298 -13 2130 108 0 23 chr1 27621948 27622117 -254571547 + AluSx SINE Alu 139 299 -13 502 268 98 38 chr1 27622281 27622464 -254571200 + L3 LINE CR1 1377 1570 -7 340 319 43 0 chr1 27623134 27623250 -254570414 + MIR3 SINE MIR 76 196 -12 2236 104 3 3 chr1 27624761 27625060 -254568604 - AluSx SINE Alu -13 299 1 212 0 36 0 chr1 27625217 27625245 -254568419 + (TTTTC)n Simple_repeat Simple_repeat 1 29 0 502 231 0 0 chr1 27625246 27625350 -254568314 - U13 snRNA snRNA 0 104 1 1519 192 7 18 chr1 27625381 27625667 -254567997 - AluJo SINE Alu -25 287 5 22 35 0 0 chr1 27625673 27625702 -254567962 + AT_rich Low_complexity Low_complexity 1 29 0 2048 144 3 3 chr1 27625709 27626014 -254567650 + AluSx SINE Alu 1 305 -7 407 225 146 17 chr1 27626027 27626205 -254567459 - L1ME3 LINE L1 -24 6138 5938 2247 117 0 7 chr1 27626210 27626510 -254567154 - AluSx SINE Alu -14 298 1 2362 82 3 3 chr1 27627377 27627671 -254565993 + AluSc SINE Alu 1 294 -15 252 178 30 56 chr1 27628102 27628216 -254565448 + L1MD3 LINE L1 6624 6733 -1081 474 254 0 75 chr1 27628584 27628598 -254565066 - L2 LINE L2 0 3313 3300 779 200 0 0 chr1 27628598 27628728 -254564936 - FLAM_C SINE Alu -3 130 1 474 254 0 75 chr1 27628728 27628886 -254564778 - L2 LINE L2 -13 3300 3154 2147 110 10 7 chr1 27629369 27629661 -254564003 - AluSp SINE Alu -20 293 1 698 229 18 12 chr1 27629663 27629829 -254563835 - MER5A DNA MER1_type -5 184 18 2394 69 0 13 chr1 27629853 27630156 -254563508 + AluY SINE Alu 1 299 -12 1715 153 0 19 chr1 27630231 27630499 -254563165 + AluJo SINE Alu 34 296 -16 2425 83 0 3 chr1 27631187 27631489 -254562175 + AluY SINE Alu 1 301 -10 1344 180 13 4 chr1 27632260 27632493 -254561171 - AluJo SINE Alu -15 297 63 2076 130 10 7 chr1 27632955 27633263 -254560401 - AluJb SINE Alu -3 309 1 1611 191 3 0 chr1 27633327 27633615 -254560049 + AluJo SINE Alu 24 312 0 2166 98 0 0 chr1 27633779 27634045 -254559619 - AluSq SINE Alu -47 266 1 634 506 35 4 chr1 27634074 27634305 -254559359 + AluSg/x SINE Alu 75 312 0 943 167 18 0 chr1 27634408 27634576 -254559088 + AluSg/x SINE Alu 140 310 0 1659 211 79 38 chr1 27635057 27635616 -254558048 + L2 LINE L2 2381 2962 -352 419 259 28 28 chr1 27635738 27635846 -254557818 + L2 LINE L2 3201 3308 -5 473 88 24 48 chr1 27636769 27636894 -254556770 + (TG)n Simple_repeat Simple_repeat 2 123 0 2193 91 3 7 chr1 27636896 27637181 -254556483 - AluSg SINE Alu -26 284 1 2374 94 0 0 chr1 27637192 27637491 -254556173 - AluY SINE Alu -12 299 1 257 301 0 41 chr1 27637582 27637655 -254556009 + Charlie4 DNA MER1_type 1888 1957 -4 1342 107 0 0 chr1 27638130 27638299 -254555365 - AluJo SINE Alu -143 169 1 1528 91 55 9 chr1 27638659 27638879 -254554785 + MER30 DNA MER1_type 1 230 0 2508 65 0 0 chr1 27639313 27639605 -254554059 + AluY SINE Alu 1 292 -19 227 79 26 0 chr1 27840541 27840579 -254353085 + (TA)n Simple_repeat Simple_repeat 1 39 0 24 32 0 0 chr1 27840582 27840613 -254353051 + AT_rich Low_complexity Low_complexity 1 31 0 451 88 0 0 chr1 27841760 27841817 -254351847 - Alu SINE Alu -260 58 2 554 335 30 6 chr1 27842820 27842987 -254350677 + MIR SINE MIR 48 218 -44 242 282 51 92 chr1 27843090 27843285 -254350379 - L2 LINE L2 -314 2958 2774 495 0 0 0 chr1 27843332 27843387 -254350277 + (TA)n Simple_repeat Simple_repeat 2 56 0 322 244 33 22 chr1 27843432 27843522 -254350142 + MIR SINE MIR 16 106 -102 587 285 43 5 chr1 27843523 27843730 -254349934 - LTR16C LTR ERVL -1 490 276 698 108 0 0 chr1 27843745 27843838 -254349826 + FRAM SINE Alu 54 146 -30 189 147 0 0 chr1 27843846 27843880 -254349784 + (GGGAA)n Simple_repeat Simple_repeat 4 37 0 298 250 14 0 chr1 27843899 27843971 -254349693 - L2 LINE L2 -229 3084 3012 364 241 117 22 chr1 27843975 27844112 -254349552 - MIR SINE MIR -4 258 109 550 96 14 0 chr1 27844215 27844288 -254349376 - AluS SINE Alu -238 75 2 431 205 162 0 chr1 27844649 27844766 -254348898 + MER69 DNA AcHobo 1 136 -2390 1639 122 125 21 chr1 27844769 27845048 -254348616 - AluSg SINE Alu -2 308 1 417 134 30 0 chr1 27845052 27845119 -254348545 + MER69 DNA AcHobo 2456 2524 -2 809 229 39 0 chr1 27845160 27845339 -254348325 - MIR SINE MIR -60 202 17 2191 124 27 0 chr1 27845445 27845744 -254347920 - AluSc SINE Alu -2 307 1 2592 184 24 20 chr1 27845836 27846379 -254347285 + MER90 LTR ERV1 70 614 0 256 286 68 68 chr1 27846439 27846659 -254347005 + L1ME3 LINE L1 5943 6162 0 1788 135 54 0 chr1 27846677 27846937 -254346727 + AluSx SINE Alu 7 280 -32 318 310 34 116 chr1 27848124 27848392 -254345272 + L2 LINE L2 2958 3203 -69 494 216 61 13 chr1 27849497 27849673 -254343991 + MIR SINE MIR 28 207 -55 432 248 35 120 chr1 27850371 27850425 -254343239 - MIR SINE MIR -51 211 154 2082 60 0 15 chr1 27850425 27850690 -254342974 - AluY SINE Alu -17 294 34 432 248 35 120 chr1 27850690 27850707 -254342957 - MIR SINE MIR -108 154 137 1663 193 0 30 chr1 27850707 27851007 -254342657 - AluJb SINE Alu -21 291 1 432 248 35 120 chr1 27851007 27851132 -254342532 - MIR SINE MIR -125 137 34 194 277 31 15 chr1 27851352 27851417 -254342247 - L2 LINE L2 -4 3309 3244 341 213 265 7 chr1 27851579 27851715 -254341949 - MER5A DNA MER1_type 0 189 19 609 276 71 10 chr1 27852471 27852654 -254341010 - MIR SINE MIR -6 256 64 1853 127 42 7 chr1 27852654 27852938 -254340726 + AluJb SINE Alu 6 299 -13 254 320 124 10 chr1 27853579 27853676 -254339988 + MIR SINE MIR 33 140 -68 200 316 0 0 chr1 27853714 27853771 -254339893 + MIR3 SINE MIR 143 199 -9 582 314 80 50 chr1 27853871 27854333 -254339331 - MLT1K LTR MaLR 0 476 1 698 247 97 16 chr1 27854372 27854558 -254339106 + MIR SINE MIR 37 237 -25 827 160 0 0 chr1 27854850 27854975 -254338689 + FLAM_C SINE Alu 1 125 -18 392 241 196 0 chr1 27855051 27855163 -254338501 + MIR SINE MIR 12 145 -117 2028 133 13 0 chr1 27855165 27855466 -254338198 - AluSx SINE Alu -7 305 1 33 0 0 0 chr1 27855466 27855499 -254338165 + AT_rich Low_complexity Low_complexity 1 33 0 189 0 0 0 chr1 27855718 27855739 -254337925 + (A)n Simple_repeat Simple_repeat 1 21 0 215 31 31 0 chr1 27855829 27855861 -254337803 + (TTG)n Simple_repeat Simple_repeat 1 33 0 2146 128 0 0 chr1 27855865 27856154 -254337510 - AluSx SINE Alu -23 289 1 1938 125 0 72 chr1 27856221 27856541 -254337123 - AluJo SINE Alu -15 297 1 805 184 0 7 chr1 27856541 27856677 -254336987 - AluJo SINE Alu -177 135 1 547 254 41 75 chr1 27856719 27856864 -254336800 + MIR SINE MIR 1 134 -128 2166 121 20 0 chr1 27856864 27857161 -254336503 + AluSx SINE Alu 1 303 -9 547 254 41 75 chr1 27857161 27857283 -254336381 + MIR SINE MIR 134 259 -3 2382 97 0 0 chr1 27857426 27857736 -254335928 - AluSx SINE Alu -2 310 1 427 281 34 27 chr1 27857738 27857884 -254335780 - MIR3 SINE MIR -61 147 1 322 238 163 81 chr1 27858221 27858258 -254335406 - MIR3 SINE MIR -11 197 164 2229 119 10 7 chr1 27858258 27858568 -254335096 + AluSx SINE Alu 1 311 -1 322 238 163 81 chr1 27858568 27858690 -254334974 - MIR3 SINE MIR -44 164 25 366 230 26 80 chr1 27858863 27858976 -254334688 + MIR SINE MIR 2 108 -154 * 469 317 14 0 chr1 27858973 27859118 -254334546 - MIR SINE MIR 0 262 116 2464 90 0 0 chr1 27859142 27859441 -254334223 - AluSg SINE Alu -11 299 1 1848 148 14 3 chr1 27859585 27859869 -254333795 - AluJb SINE Alu -25 287 1 475 167 0 0 chr1 27859871 27859949 -254333715 - AluJo SINE Alu -5 307 230 2589 128 54 76 chr1 27859949 27860450 -254333214 - LTR2B LTR ERV1 0 490 1 688 141 0 25 chr1 27860450 27860571 -254333093 - Harlequin LTR ERV1 0 6896 6779 * 2999 92 7 26 chr1 27860565 27861021 -254332643 - Harlequin LTR ERV1 -1186 5710 5264 605 191 0 0 chr1 27861023 27861117 -254332547 - AluJo SINE Alu -84 228 135 * 622 157 0 0 chr1 27861113 27861215 -254332449 - AluJo SINE Alu -209 103 2 442 229 14 36 chr1 27861522 27861662 -254332002 - HAL1 LINE L1 -898 1609 1473 2241 120 0 0 chr1 27861693 27861993 -254331671 - AluSx SINE Alu -12 300 1 1969 130 33 7 chr1 27862085 27862386 -254331278 + AluSc SINE Alu 1 309 0 687 128 6 2 chr1 27862432 27862599 -254331065 + MSTC LTR MaLR 231 428 0 1735 184 27 32 chr1 27864029 27864398 -254329266 - MLT1A2 LTR MaLR 0 374 8 656 250 50 144 chr1 27864399 27864575 -254329089 - L1ME4a LINE L1 -21 6100 5909 2158 101 21 0 chr1 27864575 27864862 -254328802 + AluSq SINE Alu 1 293 -20 656 250 50 144 chr1 27864862 27865121 -254328543 - L1ME4a LINE L1 -212 5909 5706 1037 142 103 71 chr1 27865128 27865208 -254328456 + L1MD2 LINE L1 6057 6133 -226 264 30 0 0 chr1 27865208 27865241 -254328423 + (CA)n Simple_repeat Simple_repeat 2 34 0 1037 142 103 71 chr1 27865241 27865380 -254328284 + L1MD2 LINE L1 6133 6289 -70 2350 108 0 10 chr1 27865380 27865558 -254328106 - AluSp SINE Alu -2 311 136 2541 64 0 3 chr1 27865558 27865856 -254327808 - AluY SINE Alu -14 297 1 2350 108 0 10 chr1 27865856 27865991 -254327673 - AluSp SINE Alu -177 136 1 1037 142 103 71 chr1 27865991 27866052 -254327612 + L1MD2 LINE L1 6289 6347 -12 1829 171 0 36 chr1 27866053 27866357 -254327307 + AluJo SINE Alu 1 293 -19 2366 100 0 0 chr1 27866359 27866658 -254327006 + AluSx SINE Alu 1 299 -13 2191 106 3 13 chr1 27867371 27867673 -254325991 - AluSx SINE Alu -13 299 1 200 280 120 0 chr1 27867814 27867889 -254325775 - MIR SINE MIR -2 260 177 1925 152 17 0 chr1 27867959 27868261 -254325403 + AluJb SINE Alu 1 307 -5 429 243 160 42 chr1 27868737 27868881 -254324783 - L2 LINE L2 0 3313 3153 883 147 0 0 chr1 27869410 27869539 -254324125 - FLAM_C SINE Alu -14 129 1 350 241 13 13 chr1 27870390 27870469 -254323195 + MIR SINE MIR 36 114 -148 197 273 18 18 chr1 27870501 27870556 -254323108 + MIR SINE MIR 196 250 -12 2273 80 40 0 chr1 27870825 27871124 -254322540 - AluSq SINE Alu -2 311 1 1675 170 33 26 chr1 27871749 27872055 -254321609 - AluJo SINE Alu 0 312 5 455 110 0 14 chr1 27872132 27872205 -254321459 - Alu SINE Alu -238 73 2 1995 117 37 0 chr1 27872359 27872691 -254320973 - AluSx SINE Alu 0 345 4 411 200 0 0 chr1 27872732 27872797 -254320867 + L2 LINE L2 3249 3313 0 2417 91 0 3 chr1 27872825 27873121 -254320543 + AluSp SINE Alu 1 295 -18 478 324 85 27 chr1 27873396 27873689 -254319975 + L2 LINE L2 3000 3309 -4 258 204 0 0 chr1 27873714 27873763 -254319901 - L2 LINE L2 -2 3270 3222 329 259 224 0 chr1 27873931 27874047 -254319617 - L2 LINE L2 -6 3307 3166 349 218 103 73 chr1 27874355 27874499 -254319165 - MIR SINE MIR -65 197 46 2428 76 0 32 chr1 27874499 27874813 -254318851 + AluSg SINE Alu 1 304 -6 349 218 103 73 chr1 27874813 27874833 -254318831 - MIR SINE MIR -216 46 28 474 241 14 28 chr1 27874896 27875037 -254318627 - MLT1J LTR MaLR 0 511 373 513 328 113 9 chr1 27875205 27875434 -254318230 - MIR SINE MIR -6 256 4 368 224 24 0 chr1 27875853 27875938 -254317726 - MLT1K LTR MaLR -2 586 500 1136 172 0 0 chr1 27876078 27876247 -254317417 - AluJb SINE Alu -10 302 134 1943 154 23 3 chr1 27876247 27876546 -254317118 - AluJo SINE Alu -7 305 1 732 230 116 81 chr1 27877340 27877610 -254316054 - MLT1K LTR MaLR -1 475 181 2332 95 7 0 chr1 27877610 27877914 -254315750 - AluSq SINE Alu -6 307 2 732 230 116 81 chr1 27877914 27878100 -254315564 - MLT1K LTR MaLR -295 181 3 515 302 66 11 chr1 27878361 27878543 -254315121 - L1ME4a LINE L1 -113 6008 5817 501 127 14 0 chr1 27878551 27878622 -254315042 - FLAM_A SINE Alu -19 123 52 1654 164 107 0 chr1 27878638 27878918 -254314746 - AluJb SINE Alu -2 310 1 329 261 54 54 chr1 27878932 27879043 -254314621 + L1MC4 LINE L1 6559 6669 -1373 305 267 22 44 chr1 27878987 27879051 -254314613 - L1MCa LINE L1 -4362 2064 2001 * 2196 90 50 0 chr1 27879051 27879328 -254314336 + AluSc SINE Alu 1 291 -18 305 267 22 44 chr1 27879328 27879353 -254314311 - L1MCa LINE L1 -4425 2001 1977 396 320 80 7 chr1 27879376 27879526 -254314138 - MIR SINE MIR -79 183 23 1893 136 7 37 chr1 27879745 27879868 -254313796 + AluSx SINE Alu 14 139 -173 2387 90 0 7 chr1 27879868 27880168 -254313496 + AluSq SINE Alu 1 298 -15 1893 136 7 37 chr1 27880168 27880339 -254313325 + AluSx SINE Alu 139 299 -13 1068 242 59 28 chr1 27880409 27880764 -254312900 + L1MC/D LINE L1 5418 5783 -2025 927 289 110 12 chr1 27880769 27881177 -254312487 - MLT1J2 LTR MaLR 0 450 3 2068 138 7 13 chr1 27881985 27882290 -254311374 - AluJo SINE Alu -9 303 1 2507 11 81 0 chr1 27882360 27882644 -254311020 + AluY SINE Alu 1 307 -4 1337 278 147 29 chr1 27883020 27883214 -254310450 - L2 LINE L2 -1 3312 3142 1765 171 23 26 chr1 27883214 27883519 -254310145 + AluJo SINE Alu 1 304 -8 1337 278 147 29 chr1 27883519 27884059 -254309605 - L2 LINE L2 -171 3142 2453 1920 145 26 16 chr1 27884059 27884363 -254309301 - AluJo SINE Alu -5 307 1 1337 278 147 29 chr1 27884363 27884466 -254309198 - L2 LINE L2 -860 2453 2364 364 221 336 0 chr1 27884594 27884707 -254308957 + L2 LINE L2 3122 3272 0 475 308 173 28 chr1 27886677 27886891 -254306773 + MIR SINE MIR 2 246 -16 189 286 0 0 chr1 27886858 27886900 -254306764 + L2 LINE L2 3259 3300 -13 * 1847 172 0 7 chr1 27887264 27887580 -254306084 + AluJo SINE Alu 3 312 0 310 210 86 0 chr1 27887601 27887682 -254305982 + MIR SINE MIR 58 145 -117 494 320 71 74 chr1 27888507 27888770 -254304894 - L3 LINE CR1 -213 1364 1102 1846 162 7 13 chr1 27888770 27889078 -254304586 + AluJb SINE Alu 1 306 -6 494 320 71 74 chr1 27889078 27889159 -254304505 - L3 LINE CR1 -475 1102 1022 208 0 0 0 chr1 27889159 27889182 -254304482 + (TTTTG)n Simple_repeat Simple_repeat 3 155 0 2145 96 0 38 chr1 27889182 27889475 -254304189 - AluSx SINE Alu -30 282 1 494 320 71 74 chr1 27889475 27889590 -254304074 - L3 LINE CR1 -553 1024 904 709 318 50 12 chr1 27889985 27890227 -254303437 - MIR SINE MIR -10 252 2 366 316 98 50 chr1 27890394 27890752 -254302912 - L2 LINE L2 -344 2970 2596 1051 185 0 0 chr1 27890765 27890927 -254302737 + AluJb SINE Alu 136 297 -15 2858 230 242 5 chr1 27891167 27891452 -254302212 + L2 LINE L2 1293 1509 -1805 2074 131 3 3 chr1 27891452 27891776 -254301888 - AluSx SINE Alu 0 312 1 2858 230 242 5 chr1 27891776 27892597 -254301067 + L2 LINE L2 1509 2662 -652 2283 69 0 4 chr1 27892609 27892885 -254300779 - AluY SINE Alu -11 300 26 5057 133 22 77 chr1 27892885 27893816 -254299848 - L1PB4 LINE L1 -8 6148 5336 2376 110 0 7 chr1 27893816 27894125 -254299539 - AluSx SINE Alu -5 307 1 5057 133 22 77 chr1 27894125 27895100 -254298564 - L1PB4 LINE L1 -820 5336 4309 825 165 0 0 chr1 27895106 27895233 -254298431 - FLAM_C SINE Alu -4 129 3 241 145 0 113 chr1 27895244 27895306 -254298358 - L1PB4 LINE L1 -1819 4327 4273 759 96 29 0 chr1 27895358 27895462 -254298202 - U6 snRNA snRNA 0 107 1 1426 239 63 45 chr1 27895467 27895858 -254297806 + L2 LINE L2 2665 3056 -257 2329 99 7 0 chr1 27895858 27896160 -254297504 + AluSc SINE Alu 1 304 -5 1426 239 63 45 chr1 27896160 27896421 -254297243 + L2 LINE L2 3056 3311 -2 224 341 61 0 chr1 27896433 27896515 -254297149 - L2 LINE L2 -18 3295 3209 1729 169 20 10 chr1 27896822 27897118 -254296546 - AluJo SINE Alu -13 299 1 713 284 5 31 chr1 27897134 27897356 -254296308 + MIR SINE MIR 47 262 0 249 196 0 0 chr1 27898507 27898553 -254295111 + Alu SINE Alu 113 158 -8 2409 98 3 3 chr1 27898553 27898860 -254294804 + AluSx SINE Alu 1 307 -5 24 0 0 0 chr1 27898860 27898884 -254294780 + AT_rich Low_complexity Low_complexity 1 24 0 432 323 99 12 chr1 27899508 27899669 -254293995 + MIR SINE MIR 18 192 -70 604 274 57 9 chr1 27899677 27899889 -254293775 - L1M4 LINE L1 -3250 2896 2675 2208 133 0 7 chr1 27899933 27900235 -254293429 - AluSx SINE Alu -12 300 1 1201 254 48 33 chr1 27900721 27901052 -254292612 - MLT1I LTR MaLR 0 409 74 1138 53 0 0 chr1 27901594 27901726 -254291938 - AluY SINE Alu -179 132 1 356 285 96 20 chr1 27902259 27902438 -254291226 - MIR SINE MIR -29 233 45 2390 94 0 0 chr1 27902443 27902741 -254290923 - AluSq SINE Alu -15 298 1 1058 143 30 0 chr1 27902746 27902914 -254290750 - AluJb SINE Alu -7 305 133 1796 160 7 14 chr1 27903185 27903478 -254290186 - AluJb SINE Alu -7 305 15 759 290 107 0 chr1 27903483 27903707 -254289957 + MIR SINE MIR 13 260 -2 333 155 0 0 chr1 27903812 27903870 -254289794 + CT-rich Low_complexity Low_complexity 3 60 0 873 154 23 0 chr1 27903888 27904063 -254289601 + CT-rich Low_complexity Low_complexity 2 180 0 1702 151 21 32 chr1 27904069 27904348 -254289316 - AluJo SINE Alu -36 276 1 289 238 24 189 chr1 27905071 27905319 -254288345 + MIR3 SINE MIR 1 207 -1 2407 112 0 0 chr1 27905379 27905691 -254287973 - AluSx SINE Alu 0 312 1 2176 84 4 0 chr1 27905824 27906087 -254287577 - AluSx SINE Alu -48 264 1 404 280 78 47 chr1 27906785 27906978 -254286686 + MIR SINE MIR 34 232 -30 662 277 104 0 chr1 27907037 27907239 -254286425 - MIR SINE MIR -15 247 25 2238 110 7 0 chr1 27907252 27907543 -254286121 - AluSx SINE Alu -19 293 1 306 255 16 115 chr1 27907883 27907940 -254285724 + MER5B DNA MER1_type 2 63 -115 2071 140 0 14 chr1 27907940 27908255 -254285409 + AluSx SINE Alu 1 312 0 306 255 16 115 chr1 27908255 27908389 -254285275 + MER5B DNA MER1_type 63 174 -4 2387 99 0 0 chr1 27908417 27908719 -254284945 - AluSg SINE Alu -8 302 1 350 259 301 7 chr1 27908764 27908907 -254284757 - MIR3 SINE MIR -1 207 23 1131 167 22 0 chr1 27909020 27909200 -254284464 - AluJo SINE Alu -12 300 117 621 237 15 0 chr1 27909536 27909671 -254283993 + MER5B DNA MER1_type 42 178 0 1910 203 81 40 chr1 27909685 27909999 -254283665 - MLT1F LTR MaLR -54 488 147 2230 116 0 28 chr1 27909999 27910317 -254283347 + AluSg SINE Alu 2 310 0 1910 203 81 40 chr1 27910317 27910471 -254283193 - MLT1F LTR MaLR -395 147 1 666 256 17 6 chr1 27910685 27910857 -254282807 + MER5B DNA MER1_type 1 174 -4 2091 109 11 0 chr1 27911088 27911364 -254282300 + AluSq SINE Alu 11 289 -24 2255 68 39 0 chr1 27911509 27911788 -254281876 + AluSg SINE Alu 2 291 -19 215 192 19 19 chr1 27912861 27912913 -254280751 - MIR SINE MIR -92 170 119 2329 104 0 3 chr1 27913290 27913589 -254280075 - AluSx SINE Alu -14 298 1 825 270 25 34 chr1 27913654 27913891 -254279773 + MIR SINE MIR 19 253 -9 253 425 42 0 chr1 27913885 27914005 -254279659 - L2 LINE L2 -21 3251 3127 * 1632 80 14 24 chr1 27914488 27914700 -254278964 - AluSg/x SINE Alu -19 293 84 278 362 9 9 chr1 27915026 27915131 -254278533 - MIR SINE MIR -78 130 26 2112 128 47 33 chr1 27915300 27915659 -254278005 - THE1B LTR MaLR 0 364 1 182 179 71 54 chr1 27915706 27915762 -254277902 + MIR SINE MIR 62 118 -90 259 331 143 32 chr1 27915957 27916111 -254277553 - L2 LINE L2 0 3272 3102 1461 188 6 80 chr1 27916113 27916438 -254277226 - AluJo SINE Alu 0 302 2 715 190 8 0 chr1 27916451 27916572 -254277092 - FLAM_C SINE Alu -10 123 2 1975 110 89 0 chr1 27916846 27917128 -254276536 - AluSx SINE Alu -5 307 1 497 269 40 20 chr1 27917704 27917853 -254275811 - MIR3 SINE MIR -26 182 31 188 358 147 0 chr1 27917913 27918022 -254275642 - L2 LINE L2 -33 3239 3115 804 207 0 0 chr1 27918163 27918303 -254275361 - FAM SINE Alu -42 143 4 255 316 18 26 chr1 27918952 27919066 -254274598 - MIR3 SINE MIR -87 121 9 1881 150 3 11 chr1 27920055 27920376 -254273288 - AluJb SINE Alu 0 319 1 313 298 67 14 chr1 27920448 27920656 -254273008 - L1MC4a LINE L1 -1875 5933 5715 1384 122 5 10 chr1 27920681 27920877 -254272787 - AluJ SINE Alu -12 300 106 242 118 0 0 chr1 27920959 27920993 -254272671 + Alu SINE Alu 85 118 -184 548 274 119 40 chr1 27921085 27921118 -254272546 - L1ME4a LINE L1 -38 6083 6054 2518 81 3 0 chr1 27921118 27921426 -254272238 + AluSc SINE Alu 1 309 0 548 274 119 40 chr1 27921426 27921544 -254272120 - L1ME4a LINE L1 -67 6054 5947 695 169 8 8 chr1 27921544 27921662 -254272002 - AluJ SINE Alu -183 119 2 548 274 119 40 chr1 27921662 27921888 -254271776 - L1ME4a LINE L1 -174 5947 5675 233 217 0 50 chr1 27921899 27921959 -254271705 + MER51C LTR ERV1 92 148 -492 234 128 0 0 chr1 27922077 27922116 -254271548 + (T)n Simple_repeat Simple_repeat 1 39 0 673 269 85 36 chr1 27922219 27922609 -254271055 - L1MC4a LINE L1 -1851 5957 5549 248 244 0 58 chr1 27922616 27922702 -254270962 - L1ME4a LINE L1 -502 5619 5539 333 0 0 0 chr1 27922752 27922789 -254270875 + (CA)n Simple_repeat Simple_repeat 2 38 0 220 263 150 0 chr1 27922996 27923076 -254270588 + MIR SINE MIR 164 255 -7 208 313 152 54 chr1 27924093 27924205 -254269459 + MIR3 SINE MIR 41 163 -45 401 318 76 14 chr1 27924280 27924569 -254269095 + L1MC4a LINE L1 5620 5926 -1882 207 86 0 29 chr1 27924654 27924689 -254268975 + (CAGTT)n Simple_repeat Simple_repeat 4 37 0 2138 102 14 0 chr1 27924809 27925122 -254268542 + AluSg SINE Alu 1 310 0 314 244 43 17 chr1 27925172 27925287 -254268377 + L1ME4a LINE L1 5969 6086 -35 1160 157 127 55 chr1 27925421 27925663 -254268001 - MER66A LTR ERV1 -3 475 209 2237 113 0 0 chr1 27925663 27925956 -254267708 - AluSg SINE Alu -17 293 1 1160 157 127 55 chr1 27925956 27926044 -254267620 - MER66A LTR ERV1 -269 209 129 537 299 150 20 chr1 27926191 27926532 -254267132 + L2 LINE L2 2887 3271 -1 371 243 0 0 chr1 27926605 27926675 -254266989 - MIR SINE MIR -185 77 8 257 211 0 0 chr1 27926700 27926752 -254266912 - L2 LINE L2 -5 3308 3257 715 164 57 14 chr1 27926759 27926899 -254266765 + L1PA16 LINE L1 6007 6152 -14 2001 129 37 0 chr1 27926903 27927197 -254266467 - AluSx SINE Alu -7 305 1 2428 71 0 10 chr1 27927204 27927512 -254266152 - AluY SINE Alu -6 305 1 2087 147 3 0 chr1 27927840 27928139 -254265525 + AluSx SINE Alu 1 300 -12 1322 140 23 26 chr1 27928657 27928922 -254264742 + L1MD3 LINE L1 7711 7974 -21 30 27 0 0 chr1 27928928 27928965 -254264699 + AT_rich Low_complexity Low_complexity 1 37 0 2456 95 0 0 chr1 27928967 27929271 -254264393 + AluSg SINE Alu 1 304 -6 212 342 105 33 chr1 27929427 27929579 -254264085 - L2 LINE L2 -70 3202 3040 1684 198 48 17 chr1 27929623 27929977 -254263687 + MLT1A1 LTR MaLR 1 365 0 2214 118 0 3 chr1 27930166 27930462 -254263202 + AluSq SINE Alu 1 295 -18 283 223 108 22 chr1 27930473 27930612 -254263052 - L1ME4a LINE L1 -3 6118 5968 473 296 116 28 chr1 27930703 27930919 -254262745 - L3 LINE CR1 -11 1566 1332 2522 64 0 0 chr1 27930930 27931228 -254262436 - AluY SINE Alu -13 298 1 649 282 44 6 chr1 27931541 27931722 -254261942 - MIR SINE MIR -12 250 63 305 283 26 35 chr1 27931743 27931856 -254261808 + MIR3 SINE MIR 51 162 -46 261 260 180 30 chr1 27931857 27931957 -254261707 + MIR SINE MIR 1 115 -147 1300 211 59 12 chr1 27931957 27932539 -254261125 - MER115 DNA AcHobo 0 693 28 2402 84 3 34 chr1 27932560 27932883 -254260781 + AluSp SINE Alu 1 313 0 710 175 0 9 chr1 27932978 27933092 -254260572 - MER81 DNA DNA 0 114 2 483 262 87 0 chr1 27933094 27933220 -254260444 + MIR SINE MIR 124 260 -2 1901 157 7 7 chr1 27933260 27933560 -254260104 + AluJb SINE Alu 13 312 0 252 155 58 78 chr1 27933560 27933663 -254260001 - MER104 DNA Tc2 -76 104 4 231 260 137 0 chr1 27933672 27933745 -254259919 - L2 LINE L2 -38 3275 3193 712 301 38 0 chr1 27934064 27934303 -254259361 + L1MC4a LINE L1 5549 5796 -2012 2120 131 0 3 chr1 27934390 27934673 -254258991 + AluSx SINE Alu 1 282 -30 1272 153 119 75 chr1 27934717 27934985 -254258679 - AluJo SINE Alu -30 282 3 241 280 51 25 chr1 27934993 27935111 -254258553 + L1MC4a LINE L1 5862 5982 -1826 760 89 0 0 chr1 27935251 27935352 -254258312 + MER72 LTR ERV1 601 701 -21 266 103 0 0 chr1 27935352 27935391 -254258273 + HERVH LTR ERV1 105 143 -7570 * 557 161 29 73 chr1 27935359 27935496 -254258168 + HERVH LTR ERV1 2009 2139 -5574 984 184 83 109 chr1 27935503 27935926 -254257738 + LTR7 LTR ERV1 1 412 -38 216 0 0 0 chr1 27935926 27935950 -254257714 + (TAAAAA)n Simple_repeat Simple_repeat 1 24 0 2362 99 0 3 chr1 27936065 27936369 -254257295 + AluSq SINE Alu 1 303 -10 263 267 47 12 chr1 27936397 27936483 -254257181 - MIR SINE MIR 0 262 174 2409 86 0 0 chr1 27936545 27936849 -254256815 - AluY SINE Alu -7 304 1 292 231 100 77 chr1 27936878 27937008 -254256656 - L2 LINE L2 -14 3258 3126 902 129 0 0 chr1 27937720 27937836 -254255828 + FLAM_C SINE Alu 1 116 -27 450 0 0 0 chr1 27937852 27937902 -254255762 + (TAA)n Simple_repeat Simple_repeat 2 51 0 1574 174 13 58 chr1 27942156 27942466 -254251198 - AluJo SINE Alu -16 296 1 285 337 4 54 chr1 27943070 27943210 -254250454 - MIR SINE MIR -80 128 5 458 208 54 8 chr1 27943388 27943518 -254250146 - L1ME4a LINE L1 -14 6107 5972 210 190 164 69 chr1 27943536 27943652 -254250012 - MIR SINE MIR -55 207 81 2223 111 14 0 chr1 27944480 27944769 -254248895 - AluSx SINE Alu -19 293 1 198 0 0 0 chr1 27945357 27945379 -254248285 + (T)n Simple_repeat Simple_repeat 1 22 0 203 218 97 105 chr1 27946733 27946857 -254246807 + MIR SINE MIR 140 262 0 235 315 65 0 chr1 27947489 27947597 -254246067 + MIR3 SINE MIR 87 201 -7 2456 88 7 0 chr1 27949158 27949463 -254244201 - AluSg SINE Alu -2 308 2 318 200 62 12 chr1 27949476 27949556 -254244108 + L3 LINE CR1 1491 1574 -3 434 293 85 23 chr1 27950210 27950382 -254243282 - MIR SINE MIR -57 205 25 233 338 0 0 chr1 27950423 27950494 -254243170 + L2 LINE L2 3180 3250 -63 669 286 122 8 chr1 27950709 27950971 -254242693 + MER102b DNA MER1_type 8 299 -42 2335 66 0 14 chr1 27951111 27951397 -254242267 + AluY SINE Alu 21 302 -9 195 273 61 0 chr1 27951486 27951552 -254242112 - L2 LINE L2 -7 3265 3196 * 199 290 65 32 chr1 27951525 27951618 -254242046 + MER5A DNA MER1_type 28 123 -66 700 152 0 58 chr1 27951626 27951764 -254241900 + FLAM_C SINE Alu 2 131 -2 1879 165 0 7 chr1 27951808 27952099 -254241565 - AluJb SINE Alu -23 289 1 272 316 96 0 chr1 27952247 27952383 -254241281 + MER91A DNA MER1_type 15 163 -33 2312 110 0 0 chr1 27952656 27952956 -254240708 + AluSq SINE Alu 1 300 -13 561 307 83 0 chr1 27953170 27953362 -254240302 + MER5C DNA MER1_type 1 208 -116 525 187 9 0 chr1 27953368 27953475 -254240189 - L1MB4 LINE L1 -6 6174 6067 225 307 61 26 chr1 27953954 27954068 -254239596 - MIR SINE MIR -58 150 33 189 0 0 0 chr1 27954094 27954115 -254239549 + (A)n Simple_repeat Simple_repeat 1 21 0 2164 91 7 4 chr1 27954115 27954389 -254239275 - AluSx SINE Alu -37 275 1 33 0 0 0 chr1 27954389 27954422 -254239242 + AT_rich Low_complexity Low_complexity 1 33 0 219 234 0 0 chr1 27954866 27954913 -254238751 + MIR3 SINE MIR 131 177 -31 591 234 45 60 chr1 27955077 27955149 -254238515 - MIR SINE MIR -4 258 186 2358 101 7 0 chr1 27955149 27955446 -254238218 - AluSq SINE Alu -14 299 1 591 234 45 60 chr1 27955446 27955574 -254238090 - MIR SINE MIR -76 186 61 3310 90 9 0 chr1 27955744 27956198 -254237466 - LTR22A LTR ERVK 0 458 1 432 280 177 0 chr1 27956359 27956534 -254237130 - L2 LINE L2 -4 3309 3104 503 274 206 14 chr1 27956558 27957073 -254236591 - L2 LINE L2 -343 2971 2358 480 262 60 36 chr1 27957625 27957793 -254235871 + MLT1J LTR MaLR 223 394 -117 508 267 35 0 chr1 27958000 27958116 -254235548 - L2 LINE L2 -1 3312 3193 298 246 320 17 chr1 27958270 27958445 -254235219 - MIR SINE MIR -3 259 32 207 0 0 0 chr1 27958488 27958511 -254235153 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2443 92 0 0 chr1 27958512 27958816 -254234848 + AluSc SINE Alu 1 304 -5 290 236 94 138 chr1 27959351 27959611 -254234053 - L2 LINE L2 -49 3223 2978 2145 118 10 10 chr1 27959611 27959917 -254233747 + AluSc SINE Alu 1 306 -3 290 236 94 138 chr1 27959917 27959974 -254233690 - L2 LINE L2 -294 2978 2920 405 302 72 0 chr1 27960043 27960182 -254233482 - MIR3 SINE MIR -7 201 53 704 185 8 0 chr1 27960411 27960541 -254233123 + MER5B DNA MER1_type 48 178 0 264 185 248 57 chr1 27960857 27961000 -254232664 + MIR SINE MIR 19 183 -58 189 318 15 0 chr1 27961712 27961778 -254231886 + MIR SINE MIR 69 135 -73 2569 73 0 0 chr1 27961779 27962082 -254231582 - AluY SINE Alu -8 303 1 22 0 0 0 chr1 27962336 27962358 -254231306 + AT_rich Low_complexity Low_complexity 1 22 0 1336 183 17 4 chr1 27962389 27962656 -254231008 - AluJo SINE Alu 0 309 40 406 182 30 106 chr1 27962662 27962732 -254230932 - L1MB7 LINE L1 0 6184 6127 2304 81 0 27 chr1 27962732 27963029 -254230635 + AluY SINE Alu 2 290 -21 406 182 30 106 chr1 27963029 27963090 -254230574 - L1MB7 LINE L1 -57 6127 6063 2244 110 0 26 chr1 27963090 27963400 -254230264 - AluSq SINE Alu -11 302 1 858 169 81 12 chr1 27963403 27963563 -254230101 - FRAM SINE Alu -10 166 1 189 0 0 0 chr1 27963673 27963694 -254229970 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 2307 76 4 0 chr1 27963700 27963975 -254229689 - AluSp SINE Alu -37 276 1 242 250 43 54 chr1 27964048 27964140 -254229524 - L2 LINE L2 -349 2964 2874 1778 130 115 4 chr1 27964331 27964600 -254229064 + AluSx SINE Alu 1 299 -13 230 230 220 10 chr1 27964648 27964748 -254228916 - LTR16C LTR ERVL -1 490 370 271 316 51 25 chr1 27965498 27965694 -254227970 + L2 LINE L2 2817 3017 -255 640 319 38 9 chr1 27965925 27966138 -254227526 - MIR SINE MIR 0 262 44 249 258 68 0 chr1 27966711 27966794 -254226870 + MIR SINE MIR 51 140 -68 348 217 0 0 chr1 27966990 27967059 -254226605 + MIR SINE MIR 79 147 -115 987 162 22 11 chr1 27967059 27967244 -254226420 - MER39 LTR ERV1 0 707 521 381 91 0 0 chr1 27967240 27967295 -254226369 + MER39B LTR ERV1 411 465 -188 * 809 104 0 0 chr1 27967312 27967418 -254226246 + AluSg/x SINE Alu 189 294 -15 265 30 0 0 chr1 27967499 27967532 -254226132 - AluSp/q SINE Alu -78 225 193 1477 118 180 78 chr1 27967549 27967701 -254225963 - MER39B LTR ERV1 -187 466 331 2331 111 10 0 chr1 27967701 27968008 -254225656 - AluSg SINE Alu 0 310 1 1477 118 180 78 chr1 27968008 27968051 -254225613 - MER39B LTR ERV1 -322 331 294 180 0 0 0 chr1 27968051 27968071 -254225593 + (GGGTG)n Simple_repeat Simple_repeat 3 22 0 1477 118 180 78 chr1 27968071 27968110 -254225554 - MER39B LTR ERV1 -359 294 260 2427 91 0 0 chr1 27968110 27968408 -254225256 - AluSc SINE Alu -11 298 1 1477 118 180 78 chr1 27968408 27968554 -254225110 - MER39B LTR ERV1 -393 260 45 2280 90 0 0 chr1 27968554 27968833 -254224831 - AluSx SINE Alu -12 300 22 192 217 0 0 chr1 27968844 27968890 -254224774 + CT-rich Low_complexity Low_complexity 1 46 0 637 81 30 10 chr1 27968900 27968999 -254224665 - HY1 scRNA scRNA -9 103 3 307 79 0 143 chr1 27969000 27969063 -254224601 - MER39B LTR ERV1 -599 54 1 506 228 24 13 chr1 27969115 27969264 -254224400 + MIR SINE MIR 98 248 -14 223 120 20 20 chr1 27969569 27969619 -254224045 + CT-rich Low_complexity Low_complexity 1 50 0 725 263 0 0 chr1 27969624 27969799 -254223865 - FRAM SINE Alu -1 175 1 308 320 16 10 chr1 27969869 27970023 -254223641 - MIR SINE MIR -55 207 52 824 195 7 7 chr1 27972160 27972314 -254221350 + FRAM SINE Alu 8 161 -15 2480 94 3 0 chr1 27972316 27972623 -254221041 + AluSp SINE Alu 3 310 -3 1701 179 28 0 chr1 27972626 27972911 -254220753 + AluJb SINE Alu 1 293 -19 1912 139 27 10 chr1 27973686 27973987 -254219677 + AluJb SINE Alu 1 306 -6 210 243 146 19 chr1 27974017 27974120 -254219544 + L2 LINE L2 3150 3265 -7 406 238 32 24 chr1 27974131 27974257 -254219407 - MIR3 SINE MIR -31 177 51 322 317 54 30 chr1 27974272 27974439 -254219225 - MIR SINE MIR -35 227 57 203 250 33 125 chr1 27974619 27974739 -254218925 + L2 LINE L2 3198 3306 -7 188 108 0 27 chr1 27974929 27974966 -254218698 + (GGGGA)n Simple_repeat Simple_repeat 2 37 0 610 265 123 18 chr1 27975514 27975733 -254217931 - MIR SINE MIR 0 262 21 219 264 35 58 chr1 27975839 27975926 -254217738 + MIR SINE MIR 49 133 -75 2323 113 7 0 chr1 27976897 27977207 -254216457 - AluSx SINE Alu 0 312 1 296 281 141 0 chr1 27977215 27977336 -254216328 + MIR SINE MIR 104 241 -21 2464 71 0 3 chr1 27977354 27977650 -254216014 - AluSc SINE Alu -14 295 1 480 194 8 97 chr1 27977689 27977766 -254215898 + MER103 DNA DNA 4 66 -100 2176 135 0 3 chr1 27977766 27978070 -254215594 - AluJb SINE Alu -9 303 1 480 194 8 97 chr1 27978070 27978126 -254215538 + MER103 DNA DNA 66 125 -41 252 337 21 0 chr1 27978251 27978346 -254215318 + MIR3 SINE MIR 88 184 -24 1718 163 10 40 chr1 27979166 27979466 -254214198 + AluJo SINE Alu 5 295 -17 2269 86 7 0 chr1 27979466 27979783 -254213881 + AluSx SINE Alu 1 319 0 573 217 17 0 chr1 27979808 27979923 -254213741 + MIR SINE MIR 66 182 -80 367 310 70 0 chr1 27979956 27980098 -254213566 + L2 LINE L2 3162 3313 0 2416 89 0 10 chr1 27980482 27980660 -254213004 - AluSp SINE Alu -2 311 136 2509 74 7 0 chr1 27980660 27980969 -254212695 - AluY SINE Alu 0 311 1 2416 89 0 10 chr1 27980969 27981103 -254212561 - AluSp SINE Alu -177 136 2 367 321 133 41 chr1 27981109 27981320 -254212344 - L2 LINE L2 -1 3271 3081 2330 70 36 7 chr1 27981320 27981621 -254212043 - AluY SINE Alu -1 310 1 1587 180 30 30 chr1 27981625 27981920 -254211744 - AluJo SINE Alu -17 295 1 367 321 133 41 chr1 27981920 27982177 -254211487 - L2 LINE L2 -193 3079 2751 424 200 158 0 chr1 27982374 27982469 -254211195 - L2 LINE L2 -1 3312 3203 2484 71 13 3 chr1 27984453 27984763 -254208901 - AluSp SINE Alu 0 313 1 250 225 67 11 chr1 27984855 27984944 -254208720 - L2 LINE L2 -263 3009 2916 369 0 0 0 chr1 27985556 27985597 -254208067 + (CA)n Simple_repeat Simple_repeat 2 42 0 1915 152 0 11 chr1 27985632 27985915 -254207749 + AluSx SINE Alu 1 280 -32 2341 60 18 0 chr1 27986040 27986324 -254207340 + AluSg SINE Alu 1 289 -21 21 36 0 0 chr1 27986986 27987014 -254206650 + GC_rich Low_complexity Low_complexity 1 28 0 219 276 181 19 chr1 27987814 27987919 -254205745 - MIR SINE MIR -130 132 11 325 263 150 23 chr1 27987938 27988071 -254205593 - MIR SINE MIR -1 261 112 190 291 12 105 chr1 27988067 27988153 -254205511 - L2 LINE L2 -80 3192 3115 * 416 287 28 28 chr1 27988150 27988293 -254205371 - MIR SINE MIR 0 262 120 2349 74 0 0 chr1 27988298 27988609 -254205055 - AluY SINE Alu 0 312 2 2346 96 3 0 chr1 27988612 27988914 -254204750 - AluSq SINE Alu -10 303 1 2383 72 16 10 chr1 27988946 27989251 -254204413 + AluSx SINE Alu 1 307 -5 1710 152 3 34 chr1 27989371 27989667 -254203997 - AluJb SINE Alu -25 287 1 201 39 0 0 chr1 27989787 27989813 -254203851 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1950 124 33 0 chr1 27989817 27990091 -254203573 - AluSp SINE Alu -30 283 1 2410 106 3 0 chr1 27990099 27990410 -254203254 - AluSx SINE Alu 0 312 1 25 65 0 0 chr1 27990989 27991035 -254202629 + AT_rich Low_complexity Low_complexity 1 46 0 621 163 78 47 chr1 27991042 27991171 -254202493 + AluJo SINE Alu 12 144 -168 1381 213 197 34 chr1 27991177 27991322 -254202342 + MLT1F1 LTR MaLR 1 121 -446 1683 116 0 0 chr1 27991322 27991546 -254202118 + AluSg/x SINE Alu 87 310 -2 1381 213 197 34 chr1 27991546 27991837 -254201827 + MLT1F1 LTR MaLR 121 508 -59 535 288 109 47 chr1 27991837 27992157 -254201507 + MLT1F1-int LTR MaLR 1032 1371 0 1188 147 93 58 chr1 27992157 27992250 -254201414 + MLT1F1 LTR MaLR 1 89 -478 2031 123 22 0 chr1 27992250 27992559 -254201105 - AluSx SINE Alu 0 315 1 1188 147 93 58 chr1 27992559 27992869 -254200795 + MLT1F1 LTR MaLR 89 503 -64 2096 136 10 0 chr1 27992869 27993177 -254200487 - AluSx SINE Alu -1 311 1 1188 147 93 58 chr1 27993177 27993245 -254200419 + MLT1F1 LTR MaLR 503 567 0 5890 186 81 119 chr1 27993273 27993753 -254199911 + L1MB7 LINE L1 2533 3030 -3116 2176 89 65 3 chr1 27993753 27994044 -254199620 + AluSq SINE Alu 1 309 -4 5890 186 81 119 chr1 27994044 27994243 -254199421 + L1MB7 LINE L1 3030 3235 -2911 1849 153 4 7 chr1 27994243 27994524 -254199140 + AluJb SINE Alu 5 284 -28 5890 186 81 119 chr1 27994524 27994562 -254199102 + L1MB7 LINE L1 3235 3273 -2873 1405 124 20 0 chr1 27994562 27994763 -254198901 + AluSg/x SINE Alu 103 307 -3 5890 186 81 119 chr1 27994763 27996252 -254197412 + L1MB7 LINE L1 3273 4850 -1296 221 0 35 0 chr1 27996252 27996281 -254197383 + (TTG)n Simple_repeat Simple_repeat 2 31 0 332 123 0 18 chr1 27996352 27996409 -254197255 - L1MB8 LINE L1 -7 6171 6116 2621 146 39 46 chr1 27996409 27996556 -254197108 + L1MB7 LINE L1 5639 5786 -398 2124 145 0 10 chr1 27996556 27996867 -254196797 + AluSx SINE Alu 1 308 -4 2621 146 39 46 chr1 27996867 27997249 -254196415 + L1MB7 LINE L1 5786 6175 -9 1982 232 53 33 chr1 27997409 27997976 -254195688 - MER77 LTR ERV1 -4 601 55 1352 132 5 18 chr1 27997983 27998202 -254195462 - AluSq SINE Alu -4 309 94 210 308 0 66 chr1 27998425 27998516 -254195148 - L2 LINE L2 -671 2643 2559 1859 147 43 7 chr1 27998519 27998819 -254194845 - AluSx SINE Alu -1 311 1 2188 127 3 13 chr1 27998928 27999236 -254194428 + AluSx SINE Alu 1 305 -7 1997 128 25 0 chr1 27999769 28000051 -254193613 - AluSq SINE Alu -24 289 1 2371 98 10 0 chr1 28000051 28000355 -254193309 - AluSx SINE Alu -4 308 1 331 348 55 39 chr1 28001188 28001369 -254192295 - L2 LINE L2 -558 2756 2573 2194 93 33 3 chr1 28002094 28002394 -254191270 + AluSq SINE Alu 1 309 -4 11728 120 34 40 chr1 28002395 28002882 -254190782 - Tigger1 DNA MER2_type -362 2056 1568 701 209 8 22 chr1 28002882 28003016 -254190648 - FLAM_A SINE Alu 0 133 2 11728 120 34 40 chr1 28003016 28003306 -254190358 - Tigger1 DNA MER2_type -850 1568 1278 1899 149 28 0 chr1 28003306 28003594 -254190070 - AluJo SINE Alu -16 296 1 11728 120 34 40 chr1 28003594 28004669 -254188995 - Tigger1 DNA MER2_type -1140 1278 213 2477 51 7 3 chr1 28004669 28004963 -254188701 + AluY SINE Alu 1 295 -16 11728 120 34 40 chr1 28004963 28005174 -254188490 - Tigger1 DNA MER2_type -2205 213 2 307 305 188 0 chr1 28005493 28005647 -254188017 + L2 LINE L2 3120 3302 -11 1141 236 14 32 chr1 28005705 28005989 -254187675 - MLT1G1 LTR MaLR -302 293 15 1416 286 111 34 chr1 28006003 28006527 -254187137 - L1MEc LINE L1 -5055 1341 859 2351 94 3 10 chr1 28006527 28006826 -254186838 + AluSq SINE Alu 1 297 -16 1416 286 111 34 chr1 28006826 28007201 -254186463 - L1MEc LINE L1 -5537 859 373 533 282 11 17 chr1 28007275 28007456 -254186208 - L1MEc LINE L1 -6150 246 67 531 235 90 60 chr1 28007887 28007965 -254185699 - MIR SINE MIR 0 262 188 2519 82 0 0 chr1 28007965 28008270 -254185394 - AluSg SINE Alu -5 305 1 531 235 90 60 chr1 28008270 28008391 -254185273 - MIR SINE MIR -74 188 57 1133 53 0 0 chr1 28008403 28008534 -254185130 - AluSg SINE Alu -179 131 1 2377 90 0 10 chr1 28011858 28012159 -254181505 - AluSc SINE Alu -11 298 1 1505 142 114 35 chr1 28012703 28012992 -254180672 - AluJo SINE Alu 0 312 1 1801 155 14 10 chr1 28013083 28013373 -254180291 + AluJo SINE Alu 7 297 -15 918 277 8 28 chr1 28014591 28014840 -254178824 - MIR SINE MIR -18 244 1 198 319 181 32 chr1 28016059 28016153 -254177511 - MER5A DNA MER1_type -65 124 17 1785 136 82 0 chr1 28017913 28018192 -254175472 - AluSx SINE Alu -10 302 1 1953 137 7 7 chr1 28018468 28018752 -254174912 + AluSx SINE Alu 1 284 -28 2035 147 0 23 chr1 28018755 28019055 -254174609 + AluSx SINE Alu 4 296 -16 2099 125 14 3 chr1 28019057 28019354 -254174310 + AluSx SINE Alu 1 300 -12 229 127 36 36 chr1 28020258 28020313 -254173351 - L2 LINE L2 -188 3084 3030 1711 185 24 3 chr1 28020359 28020646 -254173018 + AluSx SINE Alu 1 293 -19 23 54 0 0 chr1 28020893 28020930 -254172734 + AT_rich Low_complexity Low_complexity 1 37 0 25 51 0 0 chr1 28021198 28021237 -254172427 + AT_rich Low_complexity Low_complexity 1 39 0 246 234 78 16 chr1 28021315 28021379 -254172285 - MIR SINE MIR -59 149 82 386 192 26 0 chr1 28021483 28021561 -254172103 + MIR SINE MIR 183 262 0 831 164 0 8 chr1 28022318 28022452 -254171212 + FLAM_A SINE Alu 1 133 0 2606 63 0 0 chr1 28023667 28023970 -254169694 + AluY SINE Alu 1 303 -8 418 303 40 51 chr1 28024249 28024424 -254169240 + MIR SINE MIR 58 230 -32 434 305 68 16 chr1 28024500 28024690 -254168974 - L2 LINE L2 0 3272 3073 232 304 29 51 chr1 28024969 28025107 -254168557 - MIR3 SINE MIR -62 146 12 239 245 108 20 chr1 28025248 28025350 -254168314 + L2 LINE L2 2673 2783 -531 387 0 0 0 chr1 28027062 28027105 -254166559 + (CA)n Simple_repeat Simple_repeat 1 43 0 772 250 60 0 chr1 28027359 28027527 -254166137 + MER45A DNA AcHobo 1 178 0 360 264 76 35 chr1 28027807 28027972 -254165692 + LTR16A1 LTR ERVL 236 412 -45 197 32 0 32 chr1 28027972 28028003 -254165661 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 360 264 76 35 chr1 28028003 28028034 -254165630 + LTR16A1 LTR ERVL 412 440 -17 652 220 126 0 chr1 28028782 28028941 -254164723 + MIR SINE MIR 27 205 -57 2251 103 0 0 chr1 28028978 28029279 -254164385 + AluSx SINE Alu 1 301 0 248 191 64 0 chr1 28031381 28031428 -254162236 + L2 LINE L2 3223 3272 0 277 269 113 36 chr1 28031713 28031901 -254161763 + MIR SINE MIR 14 211 -51 201 322 26 35 chr1 28032121 28032236 -254161428 - MIR SINE MIR -109 153 40 543 269 110 47 chr1 28032878 28033179 -254160485 + L2 LINE L2 2914 3233 -39 423 254 111 30 chr1 28033338 28033543 -254160121 - MIR SINE MIR -51 211 12 756 196 0 0 chr1 28033886 28034065 -254159599 + (TG)n Simple_repeat Simple_repeat 1 179 0 1738 165 9 22 chr1 28034116 28034432 -254159232 - AluJo SINE Alu 0 312 1 198 187 2 1 chr1 28035115 28035150 -254158514 - MIR SINE MIR -56 152 94 387 295 14 29 chr1 28035837 28036020 -254157644 - MIR3 SINE MIR -61 147 7 214 246 33 0 chr1 28036950 28037011 -254156653 + L2 LINE L2 2990 3052 -220 319 371 70 9 chr1 28037090 28037303 -254156361 - MIR SINE MIR -28 234 9 320 250 0 0 chr1 28038121 28038217 -254155447 + (CAGCC)n Simple_repeat Simple_repeat 1 96 0 215 232 295 0 chr1 28039146 28039258 -254154406 - L2 LINE L2 0 3313 3169 2258 68 0 56 chr1 28039354 28039677 -254153987 + AluY SINE Alu 1 305 -6 251 301 96 0 chr1 28039840 28039976 -254153688 + L2 LINE L2 2324 2472 -842 291 284 47 55 chr1 28040370 28040641 -254153023 - L2 LINE L2 -239 3033 2773 287 271 62 42 chr1 28040895 28041039 -254152625 + L2 LINE L2 2937 3083 -189 517 303 43 16 chr1 28041498 28041686 -254151978 - MIR SINE MIR -67 195 3 28 0 0 0 chr1 28041830 28041858 -254151806 + GC_rich Low_complexity Low_complexity 1 28 0 414 302 21 32 chr1 28042150 28042339 -254151325 + MER5A DNA MER1_type 2 188 -1 2074 92 41 17 chr1 28042500 28042793 -254150871 + AluSx SINE Alu 11 310 -2 380 244 12 0 chr1 28042820 28042906 -254150758 + MIR SINE MIR 70 156 -106 1984 146 3 0 chr1 28043837 28044139 -254149525 + AluSx SINE Alu 1 303 -9 2009 149 3 0 chr1 28044203 28044499 -254149165 + AluJb SINE Alu 1 297 -15 620 319 71 9 chr1 28044583 28044793 -254148871 + MIR SINE MIR 28 250 -12 1895 141 23 0 chr1 28044803 28045102 -254148562 - AluJb SINE Alu 0 312 7 245 259 74 32 chr1 28045116 28045255 -254148409 - MIR3 SINE MIR -76 132 15 219 213 0 53 chr1 28045912 28045987 -254147677 + C-rich Low_complexity Low_complexity 2 72 0 241 216 30 42 chr1 28046124 28046291 -254147373 + (CGG)n Simple_repeat Simple_repeat 2 166 0 278 58 14 58 chr1 28046306 28046375 -254147289 + (CGGGG)n Simple_repeat Simple_repeat 1 66 0 260 376 60 0 chr1 28047381 28047498 -254146166 - MIR SINE MIR -16 246 123 254 250 31 0 chr1 28047660 28047724 -254145940 + L2 LINE L2 3205 3270 -2 366 327 110 49 chr1 28048551 28049038 -254144626 - L2 LINE L2 0 3272 2741 474 157 0 0 chr1 28049313 28049396 -254144268 + (CA)n Simple_repeat Simple_repeat 2 84 0 546 320 106 48 chr1 28049762 28050222 -254143442 - L2 LINE L2 -23 3290 2774 890 206 0 0 chr1 28050222 28050377 -254143287 - FRAM SINE Alu -10 156 2 546 320 106 48 chr1 28050377 28050448 -254143216 - L2 LINE L2 -539 2774 2709 2224 111 0 0 chr1 28050450 28050757 -254142907 - AluSq SINE Alu -6 307 1 1330 186 43 36 chr1 28050764 28051202 -254142462 + L1MB7 LINE L1 5696 6170 -14 799 270 165 42 chr1 28051210 28051540 -254142124 - L2 LINE L2 -598 2716 2301 2290 88 0 3 chr1 28051540 28051837 -254141827 + AluSc SINE Alu 1 296 -13 799 270 165 42 chr1 28051837 28052010 -254141654 - L2 LINE L2 -1013 2301 2151 325 252 211 0 chr1 28052262 28052385 -254141279 - MER5B DNA MER1_type -3 175 27 275 288 45 54 chr1 28052568 28052679 -254140985 + MER81 DNA DNA 3 112 -2 1841 116 6 98 chr1 28052896 28053223 -254140441 - AluSx SINE Alu -15 297 1 933 194 0 0 chr1 28053225 28053380 -254140284 - FRAM SINE Alu -11 155 1 487 226 25 98 chr1 28053437 28053624 -254140040 + L1ME3 LINE L1 5945 6113 -49 2154 110 27 0 chr1 28053624 28053923 -254139741 + AluSx SINE Alu 1 307 -5 487 226 25 98 chr1 28053923 28053970 -254139694 + L1ME3 LINE L1 6113 6162 0 641 172 0 31 chr1 28054095 28054223 -254139441 - FRAM SINE Alu 0 176 53 241 367 28 0 chr1 28055192 28055301 -254138363 + L2 LINE L2 2672 2783 -531 821 210 110 27 chr1 28055301 28055475 -254138189 - MSTD LTR MaLR 0 396 238 249 33 0 0 chr1 28055475 28055505 -254138159 + (CAAG)n Simple_repeat Simple_repeat 3 32 0 821 210 110 27 chr1 28055505 28055665 -254137999 - MSTD LTR MaLR -158 238 1 354 228 276 0 chr1 28055743 28055888 -254137776 + L2 LINE L2 2881 3065 -248 202 151 170 19 chr1 28056362 28056415 -254137249 + MIR SINE MIR 87 147 -61 339 301 15 53 chr1 28056928 28057061 -254136603 - MIR SINE MIR -116 146 19 272 214 71 0 chr1 28057356 28057426 -254136238 - MER3 DNA MER1_type 0 209 135 2301 88 0 0 chr1 28057426 28057723 -254135941 + AluSg SINE Alu 1 297 -13 1284 97 6 0 chr1 28057723 28057898 -254135766 + AluSc SINE Alu 132 307 -2 305 187 93 0 chr1 28057898 28057973 -254135691 - MER3 DNA MER1_type -73 136 55 545 231 112 12 chr1 28058212 28058286 -254135378 + MER5A DNA MER1_type 4 69 -120 1474 182 71 0 chr1 28058286 28058566 -254135098 + AluJo SINE Alu 1 300 -12 545 231 112 12 chr1 28058566 28058660 -254135004 + MER5A DNA MER1_type 69 189 0 227 277 27 98 chr1 28059772 28059956 -254133708 + MLT1K LTR MaLR 1 171 -417 401 270 8 16 chr1 28060083 28060209 -254133455 + LTR67 LTR ERVL 433 557 0 466 324 127 12 chr1 28060209 28060539 -254133125 + L1ME4a LINE L1 5738 6105 -16 180 0 0 0 chr1 28060549 28060569 -254133095 + (T)n Simple_repeat Simple_repeat 1 20 0 291 296 190 21 chr1 28060743 28060885 -254132779 - MIR SINE MIR -79 183 18 1958 112 35 11 chr1 28060981 28061268 -254132396 + AluSx SINE Alu 1 294 -18 545 345 125 13 chr1 28061405 28061718 -254131946 + L2 LINE L2 2965 3312 -1 330 298 35 28 chr1 28061704 28061845 -254131819 + MIR3 SINE MIR 4 145 -63 * 180 270 54 40 chr1 28063008 28063082 -254130582 + MIR3 SINE MIR 9 83 -125 1218 167 0 23 chr1 28064396 28064612 -254129052 - AluJb SINE Alu -18 294 84 305 269 54 0 chr1 28065914 28066007 -254127657 + MER103 DNA DNA 2 99 -67 552 293 41 37 chr1 28066239 28066481 -254127183 - MIR SINE MIR 0 262 20 485 330 23 17 chr1 28067452 28067628 -254126036 + MIR3 SINE MIR 30 206 -2 268 135 135 0 chr1 28067863 28067915 -254125749 + MIR SINE MIR 88 146 -62 308 323 116 6 chr1 28069258 28069422 -254124242 + L2 LINE L2 2639 2820 -494 806 295 30 4 chr1 28069441 28069678 -254123986 + MIR SINE MIR 19 261 -1 291 263 10 176 chr1 28069801 28069931 -254123733 - L2 LINE L2 -39 3274 3124 2136 109 0 7 chr1 28069931 28070224 -254123440 - AluSx SINE Alu -21 291 1 291 263 10 176 chr1 28070224 28070306 -254123358 - L2 LINE L2 -189 3124 3124 1931 172 0 10 chr1 28070306 28070620 -254123044 + AluSx SINE Alu 1 311 -1 291 263 10 176 chr1 28070620 28070707 -254122957 - L2 LINE L2 -189 3124 3024 202 313 164 52 chr1 28070723 28071033 -254122631 + L2 LINE L2 2916 3260 -12 284 170 0 0 chr1 28071690 28071743 -254121921 - MER66B LTR ERV1 -139 347 295 643 234 82 6 chr1 28071748 28071919 -254121745 + MIR SINE MIR 46 229 -33 401 175 135 56 chr1 28072033 28072159 -254121505 + MIR SINE MIR 26 161 -101 430 231 175 7 chr1 28072302 28072445 -254121219 - MER5B DNA MER1_type -2 176 10 575 239 129 7 chr1 28072458 28072613 -254121051 - MER5B DNA MER1_type -2 176 3 371 188 21 0 chr1 28073178 28073274 -254120390 + (TCCA)n Simple_repeat Simple_repeat 2 99 0 882 305 191 3 chr1 28073297 28073912 -254119752 - L2 LINE L2 0 3313 2562 199 270 0 32 chr1 28073911 28073974 -254119690 - MIR3 SINE MIR -54 154 94 * 444 261 14 49 chr1 28074139 28074281 -254119383 + MIR3 SINE MIR 57 193 -15 243 314 59 8 chr1 28074391 28074509 -254119155 + MIR SINE MIR 18 141 -67 366 355 130 0 chr1 28075810 28075979 -254117685 - MIR SINE MIR -9 253 63 266 360 84 22 chr1 28076656 28076834 -254116830 + L2 LINE L2 3083 3271 -1 454 177 33 29 chr1 28077083 28078030 -254115634 + (TG)n Simple_repeat Simple_repeat 1 950 0 439 190 35 29 chr1 28078110 28078284 -254115380 + (TG)n Simple_repeat Simple_repeat 1 175 0 281 178 23 8 chr1 28078392 28078521 -254115143 + (TG)n Simple_repeat Simple_repeat 1 131 0 385 215 34 23 chr1 28078534 28078711 -254114953 + (TG)n Simple_repeat Simple_repeat 2 180 0 375 195 34 18 chr1 28078738 28079068 -254114596 + (TG)n Simple_repeat Simple_repeat 1 335 0 186 141 31 16 chr1 28079094 28079158 -254114506 + (TG)n Simple_repeat Simple_repeat 1 65 0 183 191 21 11 chr1 28079256 28079350 -254114314 + (TG)n Simple_repeat Simple_repeat 1 95 0 271 326 11 21 chr1 28080882 28080977 -254112687 - MIR3 SINE MIR -41 167 74 1980 93 0 7 chr1 28081429 28081698 -254111966 - AluSg SINE Alu -14 296 30 243 0 0 0 chr1 28081732 28081759 -254111905 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2182 107 0 16 chr1 28081775 28082085 -254111579 + AluSx SINE Alu 1 305 -7 1749 98 8 0 chr1 28082984 28083219 -254110445 - AluSg/x SINE Alu -8 302 66 2066 128 7 0 chr1 28083219 28083507 -254110157 - AluSx SINE Alu -21 291 1 2289 115 23 99 chr1 28083601 28083765 -254109899 + L1MA8 LINE L1 5621 5796 -495 1724 151 48 3 chr1 28083765 28084056 -254109608 + AluSx SINE Alu 1 304 -8 2289 115 23 99 chr1 28084056 28084070 -254109594 + L1MA8 LINE L1 5796 5809 -482 1866 172 13 0 chr1 28084070 28084378 -254109286 + AluJo SINE Alu 1 312 0 2289 115 23 99 chr1 28084378 28084570 -254109094 + L1MA8 LINE L1 5809 5925 -366 2406 66 3 0 chr1 28084570 28084875 -254108789 + AluSx SINE Alu 1 306 -6 2289 115 23 99 chr1 28084875 28085114 -254108550 + L1MA8 LINE L1 5925 6181 -110 235 171 0 0 chr1 28085116 28085157 -254108507 - MER116 DNA Mariner -38 42 2 30 0 0 0 chr1 28085249 28085279 -254108385 + AT_rich Low_complexity Low_complexity 1 30 0 368 309 125 0 chr1 28085325 28085461 -254108203 - MIR SINE MIR -57 205 53 763 251 90 9 chr1 28086136 28086347 -254107317 + MIR SINE MIR 35 262 0 437 297 130 54 chr1 28086491 28086730 -254106934 + L3 LINE CR1 1263 1519 -58 202 233 17 50 chr1 28086794 28086854 -254106810 - MER5A DNA MER1_type -99 90 33 191 328 0 0 chr1 28087984 28088048 -254105616 - MIR SINE MIR -20 242 179 345 299 107 17 chr1 28088517 28088694 -254104970 - MIR SINE MIR -3 205 9 229 313 135 0 chr1 28088772 28088868 -254104796 + MIR SINE MIR 32 140 -122 219 288 0 0 chr1 28088962 28089021 -254104643 + MIR SINE MIR 86 144 -64 383 304 69 12 chr1 28089596 28089807 -254103857 - MIR SINE MIR -3 259 34 399 284 108 14 chr1 28090169 28090317 -254103347 + MIR SINE MIR 44 205 -57 235 285 114 16 chr1 28090366 28090489 -254103175 - MIR SINE MIR -26 236 102 639 261 128 4 chr1 28090743 28090969 -254102695 + MIR SINE MIR 8 261 -1 283 311 19 9 chr1 28092690 28092796 -254100868 + MIR3 SINE MIR 69 175 -33 425 276 83 13 chr1 28093142 28093298 -254100366 + MIR SINE MIR 60 226 -36 194 333 65 14 chr1 28093629 28093761 -254099903 - MIR SINE MIR -38 170 36 575 278 101 29 chr1 28093783 28094023 -254099641 + L1ME4a LINE L1 5573 5826 -295 1134 104 0 0 chr1 28094026 28094180 -254099484 + AluSq SINE Alu 1 154 -159 243 256 56 89 chr1 28094193 28094283 -254099381 + MIR SINE MIR 106 192 -70 332 301 81 0 chr1 28094678 28094849 -254098815 + MIR SINE MIR 58 242 -20 653 217 23 0 chr1 28095094 28095400 -254098264 + GA-rich Low_complexity Low_complexity 1 313 0 419 186 0 8 chr1 28095417 28095535 -254098129 + GA-rich Low_complexity Low_complexity 1 117 0 265 364 42 0 chr1 28097026 28097144 -254096520 + MIR3 SINE MIR 83 205 -3 245 321 46 9 chr1 28097860 28097969 -254095695 + MIR SINE MIR 33 145 -117 195 294 59 0 chr1 28098225 28098276 -254095388 - MIR SINE MIR -110 152 99 390 225 90 107 chr1 28098610 28098788 -254094876 - MIR SINE MIR -57 205 31 186 303 81 10 chr1 28099534 28099633 -254094031 + MIR SINE MIR 18 123 -139 2043 115 3 0 chr1 28100169 28100456 -254093208 - AluSx SINE Alu -11 301 14 1941 152 0 3 chr1 28100489 28100785 -254092879 - AluSx SINE Alu -17 295 1 207 0 0 0 chr1 28100942 28100965 -254092699 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 237 283 87 22 chr1 28102400 28102492 -254091172 - MIR3 SINE MIR -27 181 84 601 270 46 6 chr1 28103687 28103861 -254089803 + MIR SINE MIR 15 195 -67 180 250 0 0 chr1 28104479 28104519 -254089145 + L2 LINE L2 3179 3218 -95 568 228 67 22 chr1 28105024 28105204 -254088460 + L2 LINE L2 2013 2200 -1114 979 89 0 0 chr1 28105213 28105337 -254088327 + AluSg SINE Alu 1 124 -186 1112 237 78 63 chr1 28105337 28105757 -254087907 + L2 LINE L2 2280 2692 -622 2330 50 0 0 chr1 28105757 28106036 -254087628 + AluY SINE Alu 1 279 -32 312 27 0 0 chr1 28106036 28106073 -254087591 + (CAA)n Simple_repeat Simple_repeat 3 39 0 1112 237 78 63 chr1 28106073 28106268 -254087396 + L2 LINE L2 2691 2905 -409 1640 245 67 80 chr1 28107171 28107342 -254086322 + MLT1G1 LTR MaLR 1 173 -422 1517 133 118 19 chr1 28107342 28107613 -254086051 - AluJo SINE Alu -14 298 1 1640 245 67 80 chr1 28107613 28108042 -254085622 + MLT1G1 LTR MaLR 173 593 -2 463 361 65 36 chr1 28108517 28108963 -254084701 + L2 LINE L2 2814 3272 0 272 242 72 2 chr1 28109423 28109518 -254084146 - MIR SINE MIR -81 127 20 441 281 71 71 chr1 28109550 28109670 -254083994 + MIR SINE MIR 23 145 -117 1833 171 0 0 chr1 28109670 28109974 -254083690 + AluJb SINE Alu 5 308 -4 441 281 71 71 chr1 28109974 28110077 -254083587 + MIR SINE MIR 144 246 -16 389 320 0 0 chr1 28110920 28111023 -254082641 - L1MC4 LINE L1 -1326 6716 6614 335 348 0 0 chr1 28110969 28111058 -254082606 + L1MC4 LINE L1 6614 6702 -1340 * 1800 137 0 20 chr1 28111070 28111362 -254082302 - AluSx SINE Alu -26 286 1 253 301 6 60 chr1 28111429 28111612 -254082052 + L2 LINE L2 2915 3087 -185 2051 144 0 0 chr1 28112064 28112376 -254081288 + AluSx SINE Alu 1 312 0 2405 71 0 0 chr1 28112394 28112703 -254080961 + AluY SINE Alu 1 309 -2 288 254 32 0 chr1 28112727 28112790 -254080874 - MIR SINE MIR -110 152 88 472 309 75 15 chr1 28113958 28114159 -254079505 - MIR SINE MIR -44 218 6 220 362 49 38 chr1 28114427 28114612 -254079052 + L2 LINE L2 3081 3267 -5 376 326 16 8 chr1 28114891 28115020 -254078644 + MIR SINE MIR 21 150 -112 420 20 0 0 chr1 28115120 28115169 -254078495 + (ATG)n Simple_repeat Simple_repeat 2 50 0 1822 129 28 3 chr1 28115171 28115458 -254078206 - AluJb SINE Alu -18 294 1 297 335 49 18 chr1 28115524 28115688 -254077976 + MIR SINE MIR 60 228 -34 288 254 102 17 chr1 28116559 28116677 -254076987 + MIR SINE MIR 17 144 -118 1999 100 0 4 chr1 28116683 28116954 -254076710 + AluSc SINE Alu 1 270 -39 453 133 0 0 chr1 28116954 28117029 -254076635 + Alu SINE Alu 235 309 -2 386 239 54 0 chr1 28117036 28117128 -254076536 + MIR SINE MIR 158 254 -8 329 265 140 17 chr1 28117178 28117415 -254076249 - L2 LINE L2 -263 3009 2739 424 268 133 0 chr1 28117674 28117838 -254075826 + MLT1J2 LTR MaLR 46 195 -255 739 274 58 0 chr1 28117841 28118031 -254075633 + MLT1J1 LTR MaLR 238 438 -8 188 234 138 78 chr1 28119224 28119359 -254074305 - MIR SINE MIR -66 196 51 1551 213 0 3 chr1 28119419 28119719 -254073945 - AluJb SINE Alu -13 299 1 449 285 101 6 chr1 28119730 28119889 -254073775 - MIR SINE MIR -63 145 20 464 311 174 13 chr1 28120933 28121238 -254072426 + L2 LINE L2 2917 3270 -2 439 301 192 18 chr1 28121808 28122037 -254071627 + MLT1H LTR MaLR 3 271 -278 2202 90 10 0 chr1 28122167 28122466 -254071198 + AluSq SINE Alu 1 302 -11 202 243 39 87 chr1 28122705 28122808 -254070856 - MIR SINE MIR -55 207 110 3965 237 85 82 chr1 28122833 28124606 -254069058 + HAL1 LINE L1 8 1786 -721 3651 209 62 71 chr1 28124600 28125222 -254068442 + L1MB7 LINE L1 4012 4638 -1546 * 540 217 28 0 chr1 28125222 28125328 -254068336 + FLAM_C SINE Alu 17 125 -18 3651 209 62 71 chr1 28125328 28125982 -254067682 + L1MB7 LINE L1 4638 5296 -888 2172 121 3 0 chr1 28125982 28126287 -254067377 + AluSx SINE Alu 1 306 -6 3651 209 62 71 chr1 28126287 28126409 -254067255 + L1MB7 LINE L1 5296 5418 -766 1837 149 0 0 chr1 28126409 28126684 -254066980 + AluSx SINE Alu 1 275 -37 216 0 0 0 chr1 28126688 28126712 -254066952 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 3651 209 62 71 chr1 28126712 28126765 -254066899 + L1MB7 LINE L1 5421 5473 -711 1653 168 10 10 chr1 28126765 28127113 -254066551 + AluJo SINE Alu 1 312 0 2065 99 0 0 chr1 28127120 28127441 -254066223 + AluSq SINE Alu 1 321 0 3651 209 62 71 chr1 28127441 28128064 -254065600 + L1MB7 LINE L1 5479 6183 -1 1147 275 51 11 chr1 28128092 28128463 -254065201 + HAL1 LINE L1 1823 2208 -299 243 0 0 0 chr1 28128466 28128493 -254065171 + (TG)n Simple_repeat Simple_repeat 2 28 0 2126 229 78 31 chr1 28128493 28128629 -254065035 + L1ME1 LINE L1 5421 5549 -617 2152 85 41 0 chr1 28128629 28128923 -254064741 + AluSp SINE Alu 1 306 -7 2126 229 78 31 chr1 28128923 28128958 -254064706 + L1ME1 LINE L1 5549 5581 -585 1711 160 0 39 chr1 28128958 28129264 -254064400 - AluJb SINE Alu -18 294 1 2126 229 78 31 chr1 28129264 28129772 -254063892 + L1ME1 LINE L1 5581 6133 -33 1460 177 76 11 chr1 28129878 28130155 -254063509 + AluJb SINE Alu 1 295 -17 2213 201 64 10 chr1 28130210 28130693 -254062971 + MLT1J LTR MaLR 1 509 -2 215 125 0 0 chr1 28130825 28130857 -254062807 + L2 LINE L2 3221 3252 -20 247 311 85 28 chr1 28130918 28131024 -254062640 + L2 LINE L2 3161 3272 0 744 297 93 41 chr1 28131059 28131595 -254062069 + MLT1K LTR MaLR 25 588 0 192 258 81 32 chr1 28132801 28132863 -254060801 + MER5A DNA MER1_type 67 131 -58 430 285 111 17 chr1 28133052 28133224 -254060440 + MIR SINE MIR 31 218 -44 375 169 26 169 chr1 28133317 28133471 -254060193 + MIR SINE MIR 81 212 -50 250 226 81 0 chr1 28134340 28134402 -254059262 - L2 LINE L2 0 3313 3247 192 191 106 0 chr1 28134856 28134903 -254058761 + L2 LINE L2 3259 3310 -3 1094 265 73 2 chr1 28135129 28135531 -254058133 + MLT1H LTR MaLR 16 549 0 202 324 59 0 chr1 28135534 28135602 -254058062 - MIR3 SINE MIR -52 156 85 290 252 138 8 chr1 28135903 28136026 -254057638 + MIR SINE MIR 124 262 0 581 274 101 10 chr1 28136107 28136315 -254057349 - MIR SINE MIR 0 262 36 2444 92 0 0 chr1 28136447 28136750 -254056914 + AluSq SINE Alu 1 303 -10 225 0 0 0 chr1 28136751 28136776 -254056888 + (TAGA)n Simple_repeat Simple_repeat 4 28 0 262 226 81 0 chr1 28137080 28137142 -254056522 - L2 LINE L2 0 3313 3247 2232 107 10 0 chr1 28137592 28137890 -254055774 - AluSq SINE Alu -12 301 1 3813 139 11 7 chr1 28137890 28138500 -254055164 + MER41B LTR ERV1 23 635 0 181 390 62 27 chr1 28138695 28138841 -254054823 + L2 LINE L2 3122 3272 0 793 238 76 24 chr1 28140377 28140528 -254053136 + MIR SINE MIR 32 200 -62 1658 193 11 0 chr1 28140528 28140829 -254052835 - AluJo SINE Alu 0 304 1 793 238 76 24 chr1 28140829 28140885 -254052779 + MIR SINE MIR 200 252 -10 271 327 34 47 chr1 28140885 28141206 -254052458 + L1ME4a LINE L1 5625 5941 -180 2407 97 3 0 chr1 28142794 28143093 -254050571 - AluSp SINE Alu -13 300 1 444 338 7 19 chr1 28143358 28143512 -254050152 + MER5B DNA MER1_type 3 154 -24 286 263 68 51 chr1 28143543 28143661 -254050003 - MIR3 SINE MIR -54 154 35 843 211 96 24 chr1 28143717 28143925 -254049739 - MIR SINE MIR -27 235 13 2149 131 0 0 chr1 28144405 28144710 -254048954 - AluSx SINE Alu -2 310 6 293 208 106 105 chr1 28144939 28145114 -254048550 + MIR SINE MIR 8 191 -64 636 210 210 9 chr1 28145310 28145539 -254048125 + ORSL DNA AcHobo 1 275 0 343 307 77 91 chr1 28147025 28147162 -254046502 + L2 LINE L2 2841 2978 -294 2265 114 23 0 chr1 28147162 28147468 -254046196 - AluSp SINE Alu 0 313 1 343 307 77 91 chr1 28147468 28147528 -254046136 + L2 LINE L2 2978 3037 -235 2254 108 7 0 chr1 28147528 28147823 -254045841 - AluSg SINE Alu -13 297 1 343 307 77 91 chr1 28147823 28148041 -254045623 + L2 LINE L2 3037 3251 -21 433 256 83 43 chr1 28148062 28148233 -254045431 - MIR SINE MIR -62 146 12 816 254 25 8 chr1 28148576 28148812 -254044852 + L1ME3 LINE L1 5466 5705 -465 * 2747 135 7 52 chr1 28148809 28149348 -254044316 + L1MB8 LINE L1 5523 6037 -141 1009 179 44 88 chr1 28149447 28149546 -254044118 + L1ME3 LINE L1 5878 5980 -182 2067 142 3 19 chr1 28149546 28149863 -254043801 + AluJo SINE Alu 1 312 0 1009 179 44 88 chr1 28149863 28150060 -254043604 + L1ME3 LINE L1 5980 6161 -1 273 240 164 0 chr1 28150614 28150718 -254042946 - MIR SINE MIR -56 152 32 549 219 31 23 chr1 28151529 28151657 -254042007 - MIR SINE MIR -105 157 29 269 192 19 0 chr1 28152407 28152459 -254041205 - L2 LINE L2 0 3272 3220 820 266 46 18 chr1 28152519 28152770 -254040894 - MIR SINE MIR -6 256 1 2303 138 28 35 chr1 28152799 28152846 -254040818 + Tigger2a DNA MER2_type 9 55 -2653 2100 134 3 7 chr1 28152846 28153145 -254040519 - AluSx SINE Alu -14 298 1 2303 138 28 35 chr1 28153145 28153526 -254040138 + Tigger2a DNA MER2_type 55 434 0 271 287 53 32 chr1 28153862 28153956 -254039708 + MIR SINE MIR 87 182 -80 620 157 128 0 chr1 28153979 28154081 -254039583 + FLAM_C SINE Alu 1 115 -18 644 256 36 10 chr1 28154307 28154502 -254039162 + MIR3 SINE MIR 5 204 -4 964 273 41 0 chr1 28154927 28155147 -254038517 - MIR SINE MIR -6 256 28 2176 127 13 0 chr1 28155150 28155458 -254038206 - AluSx SINE Alu 0 312 1 191 301 36 12 chr1 28155476 28155559 -254038105 - MIR SINE MIR -67 195 111 227 279 47 0 chr1 28155652 28155738 -254037926 - MIR SINE MIR 0 262 173 206 288 15 15 chr1 28155766 28155832 -254037832 - MIR SINE MIR -177 85 20 2395 93 0 0 chr1 28155903 28156204 -254037460 + AluSg SINE Alu 2 302 -8 384 274 111 7 chr1 28157067 28157202 -254036462 - MIR SINE MIR -101 161 13 229 299 0 15 chr1 28157316 28157383 -254036281 + L2 LINE L2 3176 3241 -31 365 309 38 1 chr1 28157729 28157864 -254035800 - MIR SINE MIR -74 134 4 552 241 137 30 chr1 28158296 28158566 -254035098 + L1ME4a LINE L1 5608 5906 -215 687 232 0 0 chr1 28159356 28159498 -254034166 - FLAM_A SINE Alu 0 142 1 282 275 55 11 chr1 28160309 28160400 -254033264 + L2 LINE L2 2990 3084 -188 374 321 58 0 chr1 28160432 28160569 -254033095 - MIR SINE MIR -89 173 29 242 344 73 26 chr1 28160630 28160781 -254032883 + L2 LINE L2 3077 3234 -38 229 223 55 49 chr1 28161153 28161254 -254032410 + MIR SINE MIR 8 106 -102 978 129 76 0 chr1 28161460 28161631 -254032033 - MER5A DNA MER1_type -3 186 3 320 250 170 0 chr1 28161925 28162037 -254031627 - MIR3 SINE MIR -45 163 33 203 253 110 34 chr1 28162768 28162914 -254030750 + L2 LINE L2 2910 3066 -206 245 208 69 69 chr1 28163006 28163078 -254030586 + L2 LINE L2 3234 3305 -8 273 279 132 23 chr1 28163422 28163439 -254030225 - L3 LINE CR1 -89 1488 1474 2340 117 0 0 chr1 28163439 28163737 -254029927 - AluSx SINE Alu -14 298 1 273 279 132 23 chr1 28163737 28163848 -254029816 - L3 LINE CR1 -103 1474 1346 469 365 75 56 chr1 28164096 28164652 -254029012 - L3 LINE CR1 -749 828 262 3295 165 25 40 chr1 28164655 28164844 -254028820 + L1MB7 LINE L1 5455 5645 -539 2176 174 147 58 chr1 28164844 28165236 -254028428 + MER68 LTR ERV1 1 451 -111 2077 128 3 16 chr1 28165236 28165549 -254028115 - AluSp SINE Alu 0 313 5 2176 174 147 58 chr1 28165549 28165672 -254027992 + MER68 LTR ERV1 451 562 0 3295 165 25 40 chr1 28165672 28166130 -254027534 + L1MB7 LINE L1 5645 6092 -92 2271 114 0 0 chr1 28166130 28166427 -254027237 + AluSx SINE Alu 1 297 -15 3295 165 25 40 chr1 28166427 28166494 -254027170 + L1MB7 LINE L1 6092 6159 -25 255 170 0 0 chr1 28166494 28166541 -254027123 + (TA)n Simple_repeat Simple_repeat 2 48 0 251 111 0 22 chr1 28166541 28166586 -254027078 - Alu SINE Alu -6 302 259 440 121 25 242 chr1 28166635 28166916 -254026748 + L1MC4 LINE L1 7807 8026 -16 333 89 11 56 chr1 28167431 28167521 -254026143 + (TC)n Simple_repeat Simple_repeat 2 87 0 529 294 107 10 chr1 28167661 28167950 -254025714 - L1ME4a LINE L1 -226 5895 5579 605 234 157 4 chr1 28168231 28168479 -254025185 + L1ME4a LINE L1 5812 6097 -24 243 0 0 0 chr1 28168619 28168646 -254025018 + (A)n Simple_repeat Simple_repeat 1 27 0 183 266 84 84 chr1 28168708 28168851 -254024813 - MIR3 SINE MIR 0 208 66 255 61 0 0 chr1 28169048 28169081 -254024583 + (TG)n Simple_repeat Simple_repeat 2 34 0 294 238 211 27 chr1 28170403 28170550 -254023114 + MER5A DNA MER1_type 9 182 -7 707 240 69 6 chr1 28170561 28170736 -254022928 + MIR SINE MIR 63 248 -14 4667 79 8 21 chr1 28170745 28171403 -254022261 + L1PB2 LINE L1 5500 6148 -3 745 306 102 25 chr1 28171480 28172150 -254021514 + L2 LINE L2 2545 3270 -2 197 261 65 65 chr1 28172601 28172693 -254020971 - MIR SINE MIR -50 212 121 192 330 45 11 chr1 28172708 28172796 -254020868 - MIR SINE MIR -11 251 161 521 208 73 25 chr1 28172805 28172946 -254020718 + MIR SINE MIR 20 164 -64 * 646 257 214 0 chr1 28172936 28173142 -254020522 - MIR SINE MIR -11 251 2 209 344 143 11 chr1 28173278 28173627 -254020037 + L2 LINE L2 2382 2776 -538 1557 162 101 85 chr1 28173716 28174038 -254019626 + MLT1D LTR MaLR 4 338 -167 3106 158 10 57 chr1 28174038 28174619 -254019045 + MLT2B3 LTR ERVL 1 554 0 1557 162 101 85 chr1 28174619 28174790 -254018874 + MLT1D LTR MaLR 338 505 0 208 306 156 69 chr1 28174930 28175090 -254018574 + L2 LINE L2 3063 3236 -36 457 241 157 60 chr1 28175158 28175314 -254018350 - MIR SINE MIR -11 251 67 1877 161 0 7 chr1 28175314 28175605 -254018059 + AluJb SINE Alu 1 289 -23 457 241 157 60 chr1 28175605 28175664 -254018000 - MIR SINE MIR -195 67 15 204 187 33 132 chr1 28175743 28175834 -254017830 - MIR SINE MIR -180 82 1 1577 181 0 59 chr1 28176702 28177005 -254016659 - AluJo SINE Alu -24 288 4 582 257 29 38 chr1 28177011 28177226 -254016438 - MIR SINE MIR -8 254 41 2547 64 0 10 chr1 28177635 28177946 -254015718 + AluY SINE Alu 1 308 -3 670 287 158 4 chr1 28178031 28178296 -254015368 - L2 LINE L2 -3 3310 3005 2332 99 0 3 chr1 28178988 28179291 -254014373 - AluSx SINE Alu -10 302 1 198 0 0 0 chr1 28180615 28180637 -254013027 + (A)n Simple_repeat Simple_repeat 1 22 0 22 0 0 0 chr1 28182210 28182232 -254011432 + AT_rich Low_complexity Low_complexity 1 22 0 1959 128 69 9 chr1 28182855 28183175 -254010489 + MER44D DNA MER2_type 1 609 0 201 298 53 0 chr1 28183185 28183242 -254010422 - L2 LINE L2 -25 3247 3188 29 0 0 0 chr1 28183263 28183292 -254010372 + AT_rich Low_complexity Low_complexity 1 29 0 203 0 0 36 chr1 28183299 28183348 -254010316 + (TAAA)n Simple_repeat Simple_repeat 1 74 0 203 0 0 36 chr1 28183348 28183376 -254010288 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2050 84 9 100 chr1 28183392 28183713 -254009951 - AluSx SINE Alu -20 292 1 838 129 32 8 chr1 28183717 28183841 -254009823 - FLAM_C SINE Alu -14 129 3 359 266 218 8 chr1 28184235 28184359 -254009305 - L2 LINE L2 0 3272 3123 404 225 159 53 chr1 28185050 28185201 -254008463 + L2 LINE L2 3147 3313 0 1971 209 126 10 chr1 28185336 28185502 -254008162 + MER63C DNA MER1_type 257 402 -658 2110 132 0 0 chr1 28185502 28185789 -254007875 + AluJb SINE Alu 1 287 -25 2381 61 47 7 chr1 28185799 28186096 -254007568 + AluY SINE Alu 1 309 -2 2240 98 4 0 chr1 28186096 28186373 -254007291 - AluSp SINE Alu -35 278 1 1971 209 126 10 chr1 28186373 28186773 -254006891 + MER63C DNA MER1_type 408 902 -28 1770 168 0 14 chr1 28187738 28188035 -254005629 + AluJb SINE Alu 1 293 -19 405 241 0 52 chr1 28188176 28188292 -254005372 + MIR SINE MIR 30 139 -123 2510 68 0 0 chr1 28189368 28189664 -254004000 + AluY SINE Alu 1 296 -15 2301 106 7 0 chr1 28190095 28190397 -254003267 + AluSx SINE Alu 1 304 -8 375 260 60 10 chr1 28191226 28191326 -254002338 - MIR3 SINE MIR -31 177 73 2430 92 0 0 chr1 28191548 28191851 -254001813 + AluSc SINE Alu 1 303 -6 756 217 48 14 chr1 28192442 28192649 -254001015 - MER20 DNA MER1_type 0 219 6 1873 177 6 3 chr1 28193114 28193425 -254000239 + AluJb SINE Alu 1 312 0 1537 161 0 40 chr1 28193427 28193676 -253999988 + AluJb SINE Alu 1 239 -73 288 277 270 7 chr1 28193676 28193824 -253999840 - MIR SINE MIR 0 262 76 2185 115 3 3 chr1 28196555 28196850 -253996814 + AluSx SINE Alu 1 295 -17 223 330 130 9 chr1 28198156 28198271 -253995393 + MIR SINE MIR 20 148 -114 2679 191 70 26 chr1 28199447 28200064 -253993600 + L1MB5 LINE L1 5525 6168 -6 298 326 141 35 chr1 28201490 28201671 -253991993 + L2 LINE L2 2038 2198 -1116 1889 136 26 13 chr1 28201671 28201973 -253991691 + AluJb SINE Alu 1 306 -6 198 0 0 0 chr1 28201973 28201995 -253991669 + (TA)n Simple_repeat Simple_repeat 2 23 0 298 326 141 35 chr1 28201995 28202159 -253991505 + L2 LINE L2 2197 2421 -893 1458 94 0 11 chr1 28202686 28202877 -253990787 + AluSq SINE Alu 1 189 -124 261 0 0 0 chr1 28202877 28202906 -253990758 + (TAA)n Simple_repeat Simple_repeat 2 30 0 1991 123 0 53 chr1 28202922 28203224 -253990440 + AluSq SINE Alu 1 286 -27 237 33 0 0 chr1 28203232 28203262 -253990402 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 484 268 21 49 chr1 28204820 28204962 -253988702 + MER5B DNA MER1_type 28 165 -13 3290 256 68 26 chr1 28206981 28209130 -253984534 + L1ME2 LINE L1 527 2779 -3301 22 0 0 0 chr1 28209220 28209242 -253984422 + AT_rich Low_complexity Low_complexity 1 22 0 236 160 0 0 chr1 28209250 28209300 -253984364 + L1ME2 LINE L1 3119 3168 -2912 2283 120 3 0 chr1 28209312 28209620 -253984044 - AluSx SINE Alu -3 309 1 4904 52 17 2 chr1 28209623 28210639 -253983025 + MER11A LTR ERVK 1 1266 0 538 280 69 47 chr1 28210688 28210748 -253982916 + L1ME2 LINE L1 3222 3279 -2801 2217 116 3 35 chr1 28210748 28211066 -253982598 + AluSx SINE Alu 5 312 0 538 280 69 47 chr1 28211066 28211323 -253982341 + L1ME2 LINE L1 3279 3546 -2534 665 210 8 0 chr1 28211338 28211462 -253982202 + FLAM_A SINE Alu 10 134 -8 2095 227 41 22 chr1 28211491 28211643 -253982021 + L1ME2 LINE L1 3565 3713 -2367 1938 130 3 11 chr1 28211643 28211957 -253981707 - AluSx SINE Alu 0 312 1 2095 227 41 22 chr1 28211957 28212504 -253981160 + L1ME2 LINE L1 3713 4323 -1757 * 13668 177 37 24 chr1 28212503 28213328 -253980336 + L1PB3 LINE L1 2589 3402 -3468 2379 102 3 0 chr1 28213328 28213633 -253980031 + AluSc SINE Alu 1 306 -3 13668 177 37 24 chr1 28213633 28214415 -253979249 + L1PB3 LINE L1 3402 4172 -2698 1733 134 4 30 chr1 28214415 28214677 -253978987 + AluSx SINE Alu 1 255 -57 13668 177 37 24 chr1 28214677 28215225 -253978439 + L1PB3 LINE L1 4172 4711 -2159 2101 126 0 10 chr1 28215225 28215545 -253978119 + AluSx SINE Alu 1 317 0 13668 177 37 24 chr1 28215545 28216772 -253976892 + L1PB3 LINE L1 4711 6046 -824 1969 116 58 4 chr1 28216772 28217047 -253976617 + AluSx SINE Alu 1 290 -22 13668 177 37 24 chr1 28217047 28217876 -253975788 + L1PB3 LINE L1 6046 6863 -7 2373 110 0 0 chr1 28217885 28218194 -253975470 + AluSq SINE Alu 1 309 -4 2809 202 61 61 chr1 28218204 28218441 -253975223 + L1ME2 LINE L1 4287 4523 -1575 1608 173 3 50 chr1 28218441 28218742 -253974922 - AluJb SINE Alu -25 287 1 2809 202 61 61 chr1 28218742 28218918 -253974746 + L1ME2 LINE L1 4523 4698 -1400 1999 137 55 0 chr1 28218918 28219211 -253974453 + AluSx SINE Alu 1 309 -3 2809 202 61 61 chr1 28219211 28219835 -253973829 + L1ME2 LINE L1 4698 5321 -777 2520 84 0 0 chr1 28219835 28220144 -253973520 + AluY SINE Alu 1 309 -2 2809 202 61 61 chr1 28220144 28220648 -253973016 + L1ME2 LINE L1 5321 5844 -254 1653 183 22 39 chr1 28220648 28220959 -253972705 - AluJo SINE Alu -6 306 1 2809 202 61 61 chr1 28220959 28221030 -253972634 + L1ME2 LINE L1 5844 5914 -184 236 125 0 0 chr1 28221077 28221117 -253972547 + MER3 DNA MER1_type 11 50 -159 279 147 0 174 chr1 28221125 28221191 -253972473 + L1ME2 LINE L1 6000 6041 -57 2308 102 13 0 chr1 28221191 28221494 -253972170 + AluSx SINE Alu 1 307 -5 279 147 0 174 chr1 28221494 28221536 -253972128 + L1ME2 LINE L1 6041 6089 -9 198 281 73 12 chr1 28224052 28224134 -253969530 - L2 LINE L2 -7 3306 3220 * 212 246 143 56 chr1 28224132 28224258 -253969406 - MIR3 SINE MIR -23 185 49 401 339 85 40 chr1 28224271 28224448 -253969216 + MER91A DNA MER1_type 1 185 -11 2204 108 6 22 chr1 28224564 28224880 -253968784 + AluSx SINE Alu 1 311 -1 266 252 224 9 chr1 28225406 28225513 -253968151 - MIR SINE MIR -62 146 17 29 0 0 0 chr1 28228418 28228447 -253965217 + GC_rich Low_complexity Low_complexity 1 29 0 38 108 0 0 chr1 28228888 28229045 -253964619 + GC_rich Low_complexity Low_complexity 1 157 0 1129 149 101 71 chr1 28229054 28229620 -253964044 - MER52A LTR ERV1 -1090 665 5 207 114 0 0 chr1 28229654 28229689 -253963975 + (CCG)n Simple_repeat Simple_repeat 3 37 0 260 148 25 37 chr1 28229709 28229790 -253963874 + (CCCG)n Simple_repeat Simple_repeat 3 82 0 201 218 0 0 chr1 28232126 28232171 -253961493 - MIR SINE MIR -63 145 104 385 274 5 22 chr1 28232188 28232310 -253961354 - MIR SINE MIR -46 216 98 3435 143 8 4 chr1 28232319 28232837 -253960827 - MLT2B1 LTR ERVL 0 520 1 244 279 101 0 chr1 28232911 28232990 -253960674 - L2 LINE L2 0 3313 3227 445 219 124 15 chr1 28233013 28233150 -253960514 - L2 LINE L2 0 3313 3162 462 277 107 34 chr1 28233173 28233379 -253960285 - MIR SINE MIR -36 226 6 2077 132 0 0 chr1 28233452 28233755 -253959909 + AluSx SINE Alu 1 303 -9 613 173 230 7 chr1 28233756 28233895 -253959769 - MIR SINE MIR -65 197 28 611 295 191 33 chr1 28234029 28234792 -253958872 - L2 LINE L2 0 3272 2400 705 251 18 66 chr1 28235291 28235310 -253958354 + MIR SINE MIR 8 26 -236 1186 194 14 0 chr1 28235310 28235526 -253958138 + MER20 DNA MER1_type 1 219 0 705 251 18 66 chr1 28235526 28235724 -253957940 + MIR SINE MIR 26 212 -50 841 252 54 8 chr1 28235803 28236045 -253957619 + MIR SINE MIR 10 262 0 1010 144 0 0 chr1 28237332 28237492 -253956172 - AluSg/x SINE Alu -16 296 137 828 101 0 0 chr1 28237827 28237936 -253955728 + AluSp/q SINE Alu 173 281 -32 1028 102 28 0 chr1 28237936 28238189 -253955475 + GA-rich Low_complexity Low_complexity 1 260 0 242 257 99 50 chr1 28238194 28238295 -253955369 + MIR SINE MIR 157 262 0 320 222 56 21 chr1 28238321 28238465 -253955199 + L1ME4a LINE L1 5962 6110 -11 1189 178 49 0 chr1 28239388 28239613 -253954051 + L1MB5 LINE L1 5743 5978 -206 730 146 108 0 chr1 28239620 28239750 -253953914 + L1MB5 LINE L1 6030 6173 -1 22 35 0 0 chr1 28239779 28239808 -253953856 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr1 28240253 28240281 -253953383 + AT_rich Low_complexity Low_complexity 1 28 0 930 159 43 119 chr1 28240545 28240822 -253952842 - LTR54B LTR ERV1 -241 257 2 881 259 61 11 chr1 28240884 28241147 -253952517 - L2 LINE L2 -2 3311 3036 1212 104 0 6 chr1 28243760 28243923 -253949741 + AluSq SINE Alu 1 162 -151 415 212 7 7 chr1 28243929 28244066 -253949598 + (CATG)n Simple_repeat Simple_repeat 4 140 0 1112 142 0 0 chr1 28244085 28244247 -253949417 + AluSg/x SINE Alu 139 300 -12 1704 150 18 0 chr1 28245116 28245402 -253948262 - AluJb SINE Alu -21 291 1 199 280 120 0 chr1 28245472 28245547 -253948117 + MIR SINE MIR 177 260 -2 2045 106 3 13 chr1 28245688 28245990 -253947674 + AluSx SINE Alu 1 299 -13 2145 110 0 0 chr1 28246703 28247002 -253946662 - AluSx SINE Alu -13 299 1 1682 174 0 37 chr1 28247010 28247308 -253946356 - AluJb SINE Alu -25 287 1 345 198 88 11 chr1 28247394 28247485 -253946179 + L1ME4a LINE L1 6003 6100 -21 1859 182 27 32 chr1 28247486 28247855 -253945809 + MLT1A2 LTR MaLR 8 374 0 433 129 8 2 chr1 28249285 28249412 -253944252 - MSTC LTR MaLR 0 428 271 1710 147 43 7 chr1 28249623 28249923 -253943741 + AluSx SINE Alu 1 311 -1 207 308 0 66 chr1 28249926 28250017 -253943647 + L2 LINE L2 2559 2643 -671 1265 122 5 31 chr1 28250240 28250462 -253943202 + AluSq SINE Alu 94 309 -4 2140 232 53 33 chr1 28250469 28251036 -253942628 + MER77 LTR ERV1 55 683 -4 1946 151 52 18 chr1 28251193 28251578 -253942086 - L1MB8 LINE L1 -2 6176 5779 1993 138 0 10 chr1 28251578 28251889 -253941775 - AluSx SINE Alu -4 308 1 356 259 301 7 chr1 28251934 28252077 -253941587 - MIR3 SINE MIR -1 207 23 1068 161 22 0 chr1 28252190 28252370 -253941294 - AluJo SINE Alu -12 300 117 625 215 22 7 chr1 28252706 28252841 -253940823 + MER5B DNA MER1_type 42 178 0 2077 203 81 40 chr1 28252855 28253169 -253940495 - MLT1F LTR MaLR -54 488 147 2070 117 0 25 chr1 28253169 28253486 -253940178 + AluSg SINE Alu 2 310 0 2077 203 81 40 chr1 28253486 28253640 -253940024 - MLT1F LTR MaLR -395 147 1 500 279 22 7 chr1 28253854 28253990 -253939674 + MER5B DNA MER1_type 1 138 -40 1844 178 20 0 chr1 28303997 28304300 -253889364 - AluSx SINE Alu -3 309 1 2204 99 0 7 chr1 28304430 28304767 -253888897 - AluSg SINE Alu 0 335 1 773 235 37 63 chr1 28304847 28305115 -253888549 - MIR SINE MIR 0 262 2 599 289 39 14 chr1 28305684 28305892 -253887772 + MIR SINE MIR 50 262 0 4488 45 26 0 chr1 28306539 28307115 -253886549 - LTR10C LTR ERV1 0 591 1 519 211 7 70 chr1 28307124 28307410 -253886254 + MER4C LTR ERV1 1 349 -315 460 180 180 117 chr1 28307379 28307438 -253886226 + MER4C LTR ERV1 165 219 -246 * 2193 107 4 0 chr1 28307438 28307741 -253885923 - AluSx SINE Alu 0 307 4 460 180 180 117 chr1 28307741 28307963 -253885701 + MER4C LTR ERV1 219 465 0 24 32 0 0 chr1 28308230 28308261 -253885403 + AT_rich Low_complexity Low_complexity 1 31 0 6396 119 5 53 chr1 28308263 28308404 -253885260 - L1MC1 LINE L1 -6 6327 6181 1688 123 12 0 chr1 28308404 28308647 -253885017 - AluSx SINE Alu -8 304 59 6396 119 5 53 chr1 28308647 28308876 -253884788 - L1MC1 LINE L1 -152 6181 5943 2276 101 3 19 chr1 28308876 28309183 -253884481 - AluSx SINE Alu -10 302 1 6396 119 5 53 chr1 28309183 28309850 -253883814 - L1MC1 LINE L1 -390 5943 5245 2112 118 4 0 chr1 28309850 28310167 -253883497 - AluSg SINE Alu 0 318 1 6396 119 5 53 chr1 28310167 28310195 -253883469 - L1MC1 LINE L1 -1088 5245 5217 2581 77 0 0 chr1 28310195 28310506 -253883158 - AluY SINE Alu 0 311 1 6396 119 5 53 chr1 28310506 28310630 -253883034 - L1MC1 LINE L1 -1116 5217 5186 524 122 0 0 chr1 28310691 28310765 -253882899 + AluS SINE Alu 3 76 -236 1258 135 0 0 chr1 28310865 28311043 -253882621 + AluSg/x SINE Alu 131 308 -4 186 320 0 0 chr1 28311168 28311218 -253882446 - MIR SINE MIR -83 125 76 2433 81 7 0 chr1 28311519 28311828 -253881836 - AluSp SINE Alu -2 311 1 352 269 21 103 chr1 28311889 28312131 -253881533 + L2 LINE L2 2953 3174 -139 755 204 0 0 chr1 28312133 28312265 -253881399 - FLAM_C SINE Alu -1 132 1 318 26 0 0 chr1 28312271 28312310 -253881354 + (TTTC)n Simple_repeat Simple_repeat 3 41 0 1849 159 27 0 chr1 28312317 28312613 -253881051 - AluJo SINE Alu -8 304 1 2081 145 0 3 chr1 28312621 28312924 -253880740 - AluSx SINE Alu -10 302 1 561 211 78 28 chr1 28312927 28313107 -253880557 + L2 LINE L2 3113 3301 -12 2542 80 0 6 chr1 28313133 28313447 -253880217 + AluSx SINE Alu 1 312 0 667 178 10 122 chr1 28313581 28313778 -253879886 + MIR SINE MIR 49 223 -39 228 310 42 0 chr1 28313802 28313873 -253879791 - MIR SINE MIR -21 241 168 317 289 52 10 chr1 28313877 28313974 -253879690 + L1ME3A LINE L1 6065 6165 -5 346 247 0 0 chr1 28313992 28314073 -253879591 - MIR SINE MIR -84 178 98 717 224 20 7 chr1 28314075 28314227 -253879437 + AluSg/x SINE Alu 119 272 -40 2151 116 3 14 chr1 28314243 28314548 -253879116 + AluSx SINE Alu 1 302 0 344 277 8 39 chr1 28314681 28314811 -253878853 - L1ME LINE L1 -368 5753 5628 193 250 0 0 chr1 28314814 28314858 -253878806 - MIR SINE MIR -76 132 89 225 220 153 0 chr1 28314877 28314936 -253878728 + MER91A DNA MER1_type 2 69 -127 654 276 151 31 chr1 28315114 28315465 -253878199 - L2 LINE L2 0 3313 2921 1897 185 0 6 chr1 28315581 28315895 -253877769 - AluJb SINE Alu 0 312 1 199 179 39 141 chr1 28316130 28316208 -253877456 + MIR SINE MIR 7 76 -186 738 293 8 26 chr1 28316527 28316793 -253876871 - MIR SINE MIR 0 262 2 1479 134 9 17 chr1 28317524 28317755 -253875909 + AluJo SINE Alu 40 268 -44 339 257 28 18 chr1 28318460 28318569 -253875095 - MIR SINE MIR -52 210 101 548 177 0 0 chr1 28318572 28318668 -253874996 + AluJ/FLAM SINE Alu 2 97 -215 2393 108 0 0 chr1 28318712 28319017 -253874647 + AluSg SINE Alu 2 306 -4 2010 139 26 19 chr1 28319729 28319858 -253873806 + AluJb SINE Alu 1 128 -184 2342 105 0 3 chr1 28319858 28320163 -253873501 + AluSg SINE Alu 1 304 -6 2010 139 26 19 chr1 28320163 28320343 -253873321 + AluJb SINE Alu 128 312 0 240 380 63 7 chr1 28320582 28320724 -253872940 + L2 LINE L2 3164 3313 0 681 183 0 0 chr1 28320801 28320916 -253872748 + FLAM_C SINE Alu 1 115 -18 2427 82 0 0 chr1 28320940 28321234 -253872430 + AluY SINE Alu 1 294 -17 226 214 92 92 chr1 28321662 28321793 -253871871 + MIR3 SINE MIR 62 192 -16 315 243 0 14 chr1 28323051 28323125 -253870539 - L2 LINE L2 -18 3295 3223 27 29 0 0 chr1 28323180 28323214 -253870450 + AT_rich Low_complexity Low_complexity 1 34 0 238 243 84 56 chr1 28323219 28323326 -253870338 - L2 LINE L2 -209 3063 2954 2417 98 0 3 chr1 28323435 28323742 -253869922 - AluSx SINE Alu -6 306 1 182 292 77 0 chr1 28324379 28324444 -253869220 - MIR SINE MIR -74 188 119 919 144 43 53 chr1 28324471 28324599 -253869065 + MER5A DNA MER1_type 5 132 -57 1816 153 87 0 chr1 28324599 28324886 -253868778 - AluJb SINE Alu 0 312 1 919 144 43 53 chr1 28324886 28324944 -253868720 + MER5A DNA MER1_type 132 189 0 486 285 35 6 chr1 28324974 28325148 -253868516 + MIR SINE MIR 70 247 -15 284 335 128 28 chr1 28325167 28325591 -253868073 + L2 LINE L2 2775 3253 -19 * 670 232 43 0 chr1 28325588 28325752 -253867912 - MIR SINE MIR 0 262 92 221 282 55 82 chr1 28326022 28326132 -253867532 - MIR SINE MIR -140 122 16 293 221 44 0 chr1 28326663 28326731 -253866933 + L2 LINE L2 3200 3270 -2 2166 112 34 0 chr1 28326751 28327046 -253866618 - AluSx SINE Alu -7 305 1 430 226 83 44 chr1 28327520 28327701 -253865963 + MIR SINE MIR 21 208 -54 363 175 156 71 chr1 28327702 28327802 -253865862 - Charlie4 DNA MER1_type -2 1959 1840 2288 97 10 13 chr1 28327802 28328113 -253865551 + AluSx SINE Alu 1 310 -2 363 175 156 71 chr1 28328113 28328166 -253865498 - Charlie4 DNA MER1_type -121 1840 1793 2447 90 0 10 chr1 28328166 28328477 -253865187 + AluSc SINE Alu 1 308 -1 550 167 8 68 chr1 28328487 28328619 -253865045 + FLAM_A SINE Alu 4 127 -6 2350 57 64 0 chr1 28328801 28329081 -253864583 + AluY SINE Alu 1 298 -13 1029 170 112 4 chr1 28329221 28329462 -253864202 - Charlie4 DNA MER1_type -1665 296 30 2309 96 3 0 chr1 28329577 28329870 -253863794 + AluSp SINE Alu 1 294 -19 2406 77 3 3 chr1 28329870 28330167 -253863497 + AluSq SINE Alu 1 297 -16 2335 110 3 0 chr1 28330934 28331242 -253862422 - AluSq SINE Alu -4 309 1 2189 128 7 0 chr1 28331263 28331559 -253862105 - AluSx SINE Alu -14 298 1 1849 137 0 18 chr1 28331760 28332038 -253861626 - AluJb SINE Alu -8 304 32 2155 104 31 3 chr1 28332240 28332529 -253861135 + AluSg SINE Alu 1 297 -13 267 238 323 37 chr1 28336501 28336690 -253856974 + L3 LINE CR1 1212 1454 -123 2156 118 3 10 chr1 28336816 28337113 -253856551 + AluSx SINE Alu 1 295 -17 1548 137 0 0 chr1 28337115 28337326 -253856338 + AluSq SINE Alu 1 211 -102 1144 114 124 10 chr1 28337327 28337520 -253856144 + AluJb SINE Alu 78 292 -20 1847 100 8 0 chr1 28338133 28338374 -253855290 + AluSq SINE Alu 11 253 -60 221 305 51 45 chr1 28339243 28339420 -253854244 - MER5B DNA MER1_type 0 178 1 180 220 0 34 chr1 28340738 28340797 -253852867 - L2 LINE L2 -2 3270 3214 2994 0 0 0 chr1 28340974 28341285 -253852379 + AluYa5 SINE Alu 1 311 0 2276 77 40 0 chr1 28341458 28341756 -253851908 - AluSg SINE Alu 0 310 1 278 282 167 32 chr1 28342006 28342162 -253851502 - MIR SINE MIR -12 250 74 205 302 47 0 chr1 28342341 28342447 -253851217 - MIR3 SINE MIR -24 184 74 34 72 0 0 chr1 28342597 28342666 -253850998 + GC_rich Low_complexity Low_complexity 1 69 0 327 246 145 36 chr1 28343979 28344117 -253849547 - MIR3 SINE MIR -8 200 48 262 128 0 0 chr1 28344117 28344164 -253849500 - AluSg SINE Alu -1 307 261 2509 80 0 6 chr1 28344222 28344534 -253849130 + AluSx SINE Alu 1 310 -2 336 281 33 8 chr1 28345725 28345846 -253847818 - MIR3 SINE MIR -52 156 33 426 264 40 20 chr1 28346759 28346907 -253846757 - MIR SINE MIR -27 235 85 1851 101 36 0 chr1 28346911 28347158 -253846506 - AluSg SINE Alu -44 266 11 2172 103 34 0 chr1 28347331 28347623 -253846041 + AluSx SINE Alu 1 302 -10 293 286 82 0 chr1 28348758 28348856 -253844808 + MIR SINE MIR 47 152 -110 2096 153 0 6 chr1 28349836 28350149 -253843515 - AluJb SINE Alu -1 311 1 722 276 9 32 chr1 28350244 28350461 -253843203 - MIR SINE MIR 0 262 51 2255 196 24 41 chr1 28350793 28350845 -253842819 - Zaphod DNA AcHobo -123 3908 3857 1694 168 7 20 chr1 28350845 28351142 -253842522 + AluJo SINE Alu 1 293 -19 2255 196 24 41 chr1 28351142 28351530 -253842134 - Zaphod DNA AcHobo -174 3857 3480 2290 96 27 3 chr1 28351530 28351831 -253841833 + AluSx SINE Alu 5 312 0 2255 196 24 41 chr1 28351831 28352021 -253841643 - Zaphod DNA AcHobo -551 3480 3288 541 224 24 0 chr1 28352030 28352154 -253841510 - Zaphod DNA AcHobo -3371 660 534 1419 118 63 37 chr1 28352154 28352370 -253841294 - Tigger7 DNA MER2_type 0 2487 2261 2354 97 0 3 chr1 28352370 28352668 -253840996 + AluSg SINE Alu 1 297 -13 1419 118 63 37 chr1 28352668 28352722 -253840942 - Tigger7 DNA MER2_type -226 2261 2210 1025 153 6 0 chr1 28352727 28352897 -253840767 - Tigger7 DNA MER2_type -562 171 1 1684 230 26 67 chr1 28352904 28353370 -253840294 - Zaphod DNA AcHobo -3526 505 59 818 166 77 47 chr1 28353370 28353386 -253840278 - AluJo/FRAM SINE Alu -1 311 297 2468 82 0 0 chr1 28353386 28353689 -253839975 - AluSq SINE Alu -1 312 10 818 166 77 47 chr1 28353689 28353841 -253839823 - AluJo/FRAM SINE Alu -15 297 138 476 210 59 17 chr1 28354221 28354340 -253839324 + MIR3 SINE MIR 36 159 -49 854 150 0 0 chr1 28354404 28354537 -253839127 + FLAM_C SINE Alu 1 133 0 270 321 0 12 chr1 28354550 28354631 -253839033 - MER5B DNA MER1_type -32 146 67 430 309 22 11 chr1 28354631 28354809 -253838855 + ERVL LTR ERVL 1024 1203 -4451 2277 111 0 3 chr1 28354870 28355168 -253838496 + AluSx SINE Alu 1 297 -15 946 345 64 6 chr1 28355351 28355884 -253837780 + ERVL LTR ERVL 1298 1861 -3793 1362 262 77 50 chr1 28355962 28356267 -253837397 + L2 LINE L2 2331 2626 -687 2114 136 3 3 chr1 28356267 28356569 -253837095 - AluSx SINE Alu -10 302 1 1362 262 77 50 chr1 28356569 28356934 -253836730 + L2 LINE L2 2626 3013 -300 1379 78 12 0 chr1 28356936 28357103 -253836561 - AluSc SINE Alu -20 289 121 819 145 0 48 chr1 28357139 28357284 -253836380 + FLAM_C SINE Alu 6 143 0 601 293 75 0 chr1 28357300 28357512 -253836152 - LTR16A LTR ERVL -163 287 60 448 349 7 0 chr1 28357595 28357747 -253835917 + ERVL LTR ERVL 4779 4931 -833 769 126 0 70 chr1 28357762 28357905 -253835759 + FLAM_C SINE Alu 1 133 0 2157 116 34 0 chr1 28358000 28358294 -253835370 + AluSx SINE Alu 2 305 -7 509 341 19 0 chr1 28358815 28359029 -253834635 + LTR16A LTR ERVL 70 287 -163 345 329 25 13 chr1 28359590 28359748 -253833916 - MIR SINE MIR -22 240 81 244 253 160 0 chr1 28359766 28359841 -253833823 - MIR SINE MIR -4 258 172 324 251 186 39 chr1 28359862 28360141 -253833523 - L1MEd LINE L1 -3673 2456 2137 2336 99 0 0 chr1 28360231 28360523 -253833141 - AluSq SINE Alu -21 292 1 597 318 66 28 chr1 28360619 28360748 -253832916 - L1MEd LINE L1 -5138 981 858 1880 167 6 6 chr1 28360748 28361059 -253832605 - AluJb SINE Alu -1 311 1 597 318 66 28 chr1 28361059 28361426 -253832238 - L1MEd LINE L1 -5261 858 466 2415 105 0 0 chr1 28361449 28361753 -253831911 - AluSx SINE Alu -8 304 1 2267 112 0 10 chr1 28361765 28362068 -253831596 - AluSc SINE Alu -9 300 1 279 0 0 0 chr1 28362168 28362199 -253831465 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1578 166 48 4 chr1 28362201 28362472 -253831192 - AluJb SINE Alu -29 283 1 319 311 106 13 chr1 28362677 28362828 -253830836 - L1MEd LINE L1 -5944 175 11 2431 90 0 0 chr1 28362829 28363128 -253830536 - AluSq SINE Alu -14 299 1 239 202 95 24 chr1 28363247 28363331 -253830333 - MIR SINE MIR -56 206 117 2473 35 45 3 chr1 28363337 28363627 -253830037 - AluY SINE Alu -9 302 1 2268 99 30 0 chr1 28363947 28364250 -253829414 - AluSx SINE Alu 0 312 1 934 120 0 0 chr1 28364254 28364379 -253829285 - AluJb SINE Alu -187 125 1 782 263 45 12 chr1 28364475 28364718 -253828946 + MIR SINE MIR 12 262 0 2029 150 13 19 chr1 28364821 28365135 -253828529 + AluJb SINE Alu 1 312 0 275 131 70 0 chr1 28365137 28365199 -253828465 + FLAM_A SINE Alu 25 59 -73 221 57 29 0 chr1 28365233 28365268 -253828396 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 186 226 0 38 chr1 28365945 28365998 -253827666 - L3 LINE CR1 0 1577 1527 1404 85 0 0 chr1 28366070 28366247 -253827417 - AluSg/x SINE Alu -3 309 133 2033 151 0 7 chr1 28366248 28366547 -253827117 - AluSx SINE Alu -15 297 1 2264 95 7 3 chr1 28366547 28366841 -253826823 - AluSg SINE Alu -14 296 1 2420 94 0 3 chr1 28367335 28367644 -253826020 - AluSg SINE Alu 0 310 3 2422 84 0 3 chr1 28367646 28367943 -253825721 - AluSq SINE Alu -17 296 1 4870 244 92 32 chr1 28367944 28368351 -253825313 - L1M4 LINE L1 -1095 5051 4670 1603 82 0 5 chr1 28368351 28368546 -253825118 - AluSg SINE Alu -116 194 1 4870 244 92 32 chr1 28368546 28369669 -253823995 - L1M4 LINE L1 -1476 4670 3616 2153 136 0 13 chr1 28369669 28369977 -253823687 - AluJb SINE Alu -8 304 1 4870 244 92 32 chr1 28369977 28370706 -253822958 - L1M4 LINE L1 -2530 3616 2522 1047 99 0 0 chr1 28370707 28370838 -253822826 + AluSg SINE Alu 1 131 -179 727 138 0 0 chr1 28370951 28371060 -253822604 + AluSg/x SINE Alu 190 298 -12 544 145 0 0 chr1 28371067 28371150 -253822514 + FRAM/FAM SINE Alu 1 83 -102 756 300 12 0 chr1 28371186 28371306 -253822358 - AluSq SINE Alu -66 247 130 1508 125 177 4 chr1 28371306 28371554 -253822110 - AluSg1 SINE Alu -14 295 5 258 32 0 0 chr1 28371558 28371589 -253822075 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 756 300 12 0 chr1 28371589 28371706 -253821958 - AluSq SINE Alu -185 128 2 1034 122 6 64 chr1 28371717 28371864 -253821800 - AluJ SINE Alu -22 290 153 2564 164 40 8 chr1 28371864 28372335 -253821329 - MER66B LTR ERV1 0 486 1 1034 122 6 64 chr1 28372335 28372359 -253821305 - AluJ SINE Alu -159 153 129 474 196 161 0 chr1 28372363 28372475 -253821189 - AluJ SINE Alu -172 130 1 7405 155 77 37 chr1 28372475 28372819 -253820845 - L1MCa LINE L1 -4762 1664 1335 1998 137 43 3 chr1 28372819 28373118 -253820546 + AluJb SINE Alu 1 311 -1 7405 155 77 37 chr1 28373118 28374356 -253819308 - L1MCa LINE L1 -5091 1335 18 1873 147 3 48 chr1 28374358 28374672 -253818992 - AluJo SINE Alu -12 300 1 351 196 75 0 chr1 28374682 28374789 -253818875 - L1MEc LINE L1 -5581 815 701 1174 168 62 16 chr1 28374800 28375044 -253818620 + LTR54B LTR ERV1 1 255 -243 30 27 0 0 chr1 28375058 28375095 -253818569 + AT_rich Low_complexity Low_complexity 1 37 0 1237 168 9 0 chr1 28375562 28375788 -253817876 + LTR54 LTR ERV1 276 503 -7 800 241 93 31 chr1 28375793 28376050 -253817614 - L1MEc LINE L1 -5705 691 419 258 95 0 0 chr1 28376053 28376095 -253817569 + (TG)n Simple_repeat Simple_repeat 1 42 0 189 0 0 0 chr1 28376094 28376115 -253817549 + (GA)n Simple_repeat Simple_repeat 1 21 0 * 1666 182 7 10 chr1 28376135 28376426 -253817238 - AluJb SINE Alu -22 290 1 200 217 0 0 chr1 28376479 28376525 -253817139 + A-rich Low_complexity Low_complexity 1 46 0 962 259 147 3 chr1 28376554 28376847 -253816817 - L1MEc LINE L1 -6026 370 36 200 213 0 64 chr1 28376872 28376919 -253816745 - MER5B DNA MER1_type -134 44 1 387 286 254 5 chr1 28377418 28377607 -253816057 - MIR SINE MIR -7 255 20 284 169 31 0 chr1 28377664 28377729 -253815935 - L1ME3A LINE L1 -5 6165 6099 2204 103 7 10 chr1 28377729 28378021 -253815643 - AluSq SINE Alu -16 297 7 235 195 0 0 chr1 28379874 28379915 -253813749 - L2 LINE L2 -12 3301 3261 220 245 20 0 chr1 28380055 28380104 -253813560 + L2 LINE L2 3263 3312 -1 180 77 0 0 chr1 28381877 28381903 -253811761 + (CATATA)n Simple_repeat Simple_repeat 5 30 0 28 0 0 0 chr1 28383689 28383717 -253809947 + AT_rich Low_complexity Low_complexity 1 28 0 2516 74 0 0 chr1 28383912 28384210 -253809454 - AluSc SINE Alu -11 298 1 434 243 61 40 chr1 28384633 28384781 -253808883 - MER58C DNA MER1_type -26 189 39 386 358 88 35 chr1 28384803 28385002 -253808662 + L2 LINE L2 2676 2896 -418 2276 94 7 10 chr1 28385002 28385301 -253808363 - AluSc SINE Alu -11 298 1 386 358 88 35 chr1 28385301 28385386 -253808278 + L2 LINE L2 2896 2975 -339 198 0 0 0 chr1 28385456 28385478 -253808186 + (GA)n Simple_repeat Simple_repeat 1 22 0 1902 162 0 0 chr1 28385478 28385756 -253807908 - AluJb SINE Alu -34 278 1 435 279 137 6 chr1 28386190 28386351 -253807313 - MIR SINE MIR -7 255 74 1116 154 0 28 chr1 28386540 28386722 -253806942 - AluJo SINE Alu -9 303 127 1917 148 7 7 chr1 28386809 28387106 -253806558 - AluJb SINE Alu -15 297 1 1689 160 85 3 chr1 28387116 28387398 -253806266 - AluSx SINE Alu -7 305 1 2446 103 0 0 chr1 28387550 28387862 -253805802 + AluSx SINE Alu 1 312 0 2379 103 0 3 chr1 28387866 28388176 -253805488 + AluSq SINE Alu 1 309 -4 22 0 0 0 chr1 28388202 28388224 -253805440 + AT_rich Low_complexity Low_complexity 1 22 0 1825 172 7 16 chr1 28388346 28388654 -253805010 - AluJb SINE Alu -7 305 1 2219 109 0 17 chr1 28388664 28388966 -253804698 - AluSx SINE Alu -15 297 1 2465 63 7 3 chr1 28389059 28389362 -253804302 - AluY SINE Alu -7 304 1 526 269 89 27 chr1 28389535 28389767 -253803897 + MIR SINE MIR 15 260 -2 926 245 51 16 chr1 28390742 28390995 -253802669 - MIR SINE MIR 0 262 1 2476 48 0 35 chr1 28391358 28391674 -253801990 - AluY SINE Alu -6 305 1 189 74 0 0 chr1 28393712 28393739 -253799925 + (CGG)n Simple_repeat Simple_repeat 3 29 0 348 238 50 10 chr1 28394351 28394452 -253799212 - MIR SINE MIR -35 227 123 670 228 47 29 chr1 28394879 28395050 -253798614 - MER69A DNA AcHobo -1 176 3 188 291 55 0 chr1 28395092 28395147 -253798517 + L2 LINE L2 3152 3209 -63 985 233 97 109 chr1 28395184 28395502 -253798162 + L1MC4a LINE L1 5519 5839 -1969 2437 87 0 0 chr1 28395502 28395800 -253797864 + AluSx SINE Alu 1 298 -14 985 233 97 109 chr1 28395800 28396194 -253797470 + L1MC4a LINE L1 5839 6222 -1586 1192 186 38 52 chr1 28396258 28396294 -253797370 - AluJo SINE Alu -9 303 268 2411 76 0 10 chr1 28396294 28396596 -253797068 + AluY SINE Alu 1 299 -12 1192 186 38 52 chr1 28396596 28396741 -253796923 - AluJo SINE Alu -44 268 125 2504 64 3 0 chr1 28396741 28397037 -253796627 + AluY SINE Alu 1 297 -14 1192 186 38 52 chr1 28397037 28397144 -253796520 - AluJo SINE Alu -187 125 18 548 230 94 37 chr1 28397176 28397422 -253796242 + L1MC4 LINE L1 6333 6564 -1329 2309 110 0 0 chr1 28397422 28397723 -253795941 + AluSx SINE Alu 1 301 -11 548 230 94 37 chr1 28397723 28397838 -253795826 + L1MC4 LINE L1 6564 6812 -1081 189 0 0 0 chr1 28398173 28398194 -253795470 + (A)n Simple_repeat Simple_repeat 1 21 0 2190 124 0 34 chr1 28398194 28398517 -253795147 + AluSx SINE Alu 1 312 0 238 259 197 53 chr1 28398522 28398795 -253794869 + L1MC5 LINE L1 7299 7626 -335 1960 132 13 31 chr1 28398795 28399113 -253794551 + AluSx SINE Alu 1 312 0 238 259 197 53 chr1 28399113 28399159 -253794505 + L1MC5 LINE L1 7626 7664 -297 280 250 13 26 chr1 28399716 28399792 -253793872 + MIR3 SINE MIR 117 191 -17 371 269 185 0 chr1 28400327 28400457 -253793207 - MIR SINE MIR -60 202 49 402 286 0 20 chr1 28400536 28400674 -253792990 + MIR3 SINE MIR 53 186 -22 212 292 0 31 chr1 28401402 28401467 -253792197 - MIR SINE MIR -60 148 86 2042 153 3 19 chr1 28401602 28401915 -253791749 - AluJo SINE Alu -4 308 1 2396 94 0 0 chr1 28402176 28402474 -253791190 + AluSx SINE Alu 1 298 -14 606 304 97 19 chr1 28402475 28402732 -253790932 - L2 LINE L2 -17 3296 3020 314 261 92 56 chr1 28403094 28403236 -253790428 - MIR3 SINE MIR -47 161 15 181 246 158 35 chr1 28404564 28404678 -253788986 + MIR SINE MIR 47 174 -88 2447 98 0 0 chr1 28405194 28405501 -253788163 + AluSx SINE Alu 1 307 -5 303 278 52 21 chr1 28405508 28405605 -253788059 - MIR SINE MIR -106 156 57 2425 104 3 0 chr1 28407733 28408041 -253785623 - AluSp SINE Alu -4 309 1 376 303 73 0 chr1 28408075 28408253 -253785411 + L1MC5 LINE L1 7735 7925 -36 379 266 104 19 chr1 28408406 28408560 -253785104 - MIR SINE MIR -68 194 28 684 261 28 17 chr1 28408736 28408916 -253784748 - MIR SINE MIR 0 262 81 366 23 0 0 chr1 28408937 28408980 -253784684 + (TG)n Simple_repeat Simple_repeat 2 44 0 2007 102 0 75 chr1 28408980 28409285 -253784379 - AluSx SINE Alu -28 284 3 531 104 42 31 chr1 28409300 28409396 -253784268 - L1MC1 LINE L1 -1 6332 6236 2389 116 0 0 chr1 28409673 28409983 -253783681 - AluSx SINE Alu -2 310 1 639 212 20 26 chr1 28410037 28410188 -253783476 + MIR3 SINE MIR 59 208 0 318 231 123 46 chr1 28410559 28410754 -253782910 - MLT1K LTR MaLR -22 566 357 563 303 40 70 chr1 28411060 28411335 -253782329 - L2 LINE L2 -1 3271 3004 437 100 44 33 chr1 28411335 28411425 -253782239 + L1MA8 LINE L1 6201 6291 0 563 303 40 70 chr1 28411425 28411449 -253782215 - L2 LINE L2 -268 3004 2981 394 267 75 117 chr1 28411748 28411812 -253781852 - L2 LINE L2 -39 3274 3209 1632 179 32 71 chr1 28411812 28412045 -253781619 - MLT1A1 LTR MaLR 0 365 151 2297 95 0 35 chr1 28412045 28412361 -253781303 - AluSc SINE Alu -4 305 1 1632 179 32 71 chr1 28412361 28412506 -253781158 - MLT1A1 LTR MaLR -214 151 2 394 267 75 117 chr1 28412506 28412693 -253780971 - L2 LINE L2 -104 3209 3038 2023 118 9 50 chr1 28412693 28413014 -253780650 - AluSx SINE Alu -4 308 1 394 267 75 117 chr1 28413014 28413094 -253780570 - L2 LINE L2 -275 3038 2956 2407 151 7 31 chr1 28413447 28413569 -253780095 - L1MB3 LINE L1 0 6183 6060 2045 156 3 0 chr1 28413569 28413871 -253779793 - AluSx SINE Alu -7 305 3 2407 151 7 31 chr1 28413871 28413974 -253779690 - L1MB3 LINE L1 -123 6060 5956 2292 102 0 7 chr1 28413974 28414277 -253779387 - AluSq SINE Alu -12 301 1 2407 151 7 31 chr1 28414277 28414494 -253779170 - L1MB3 LINE L1 -227 5956 5751 1731 181 3 20 chr1 28414517 28414821 -253778843 - AluJo SINE Alu -1 311 13 2250 136 0 0 chr1 28414883 28415185 -253778479 + AluSx SINE Alu 1 302 -10 271 317 135 0 chr1 28415185 28415393 -253778271 - L2 LINE L2 -618 2696 2461 229 238 250 52 chr1 28416044 28416108 -253777556 + L1ME3 LINE L1 5627 5677 -444 2112 129 0 39 chr1 28416108 28416419 -253777245 - AluSx SINE Alu -13 299 1 229 238 250 52 chr1 28416419 28416526 -253777138 + L1ME3 LINE L1 5677 5832 -289 992 179 40 31 chr1 28416545 28416768 -253776896 + L1ME3 LINE L1 5937 6161 -1 427 280 40 0 chr1 28416850 28416950 -253776714 + L2 LINE L2 3202 3305 -8 230 196 0 0 chr1 28417014 28417065 -253776599 - Alu SINE Alu 0 301 251 659 220 28 92 chr1 28417166 28417228 -253776436 - MIR SINE MIR -6 256 192 1090 166 0 0 chr1 28417228 28417391 -253776273 - FRAM SINE Alu -2 164 2 659 220 28 92 chr1 28417391 28417578 -253776086 - MIR SINE MIR -70 192 23 338 141 99 28 chr1 28417574 28417645 -253776019 + MIR SINE MIR 79 154 -108 * 241 303 0 15 chr1 28418246 28418312 -253775352 + MIR SINE MIR 30 94 -168 313 252 78 131 chr1 28418681 28418963 -253774701 - L1ME4a LINE L1 -121 6000 5734 1575 246 82 66 chr1 28419000 28419043 -253774621 - L1ME3A LINE L1 -5 6165 6124 1825 109 74 4 chr1 28419043 28419300 -253774364 + AluSq SINE Alu 24 298 -15 1575 246 82 66 chr1 28419300 28420103 -253773561 - L1ME3A LINE L1 -46 6124 5318 788 182 73 6 chr1 28420630 28420795 -253772869 - MLT1A2 LTR MaLR -28 362 187 237 258 0 0 chr1 28420799 28420817 -253772847 + GA-rich Low_complexity Low_complexity 2 19 -48 3386 169 25 68 chr1 28420817 28421538 -253772126 - LTR8 LTR ERV1 -1 690 1 237 258 0 0 chr1 28421538 28421585 -253772079 + GA-rich Low_complexity Low_complexity 18 67 0 1852 149 6 38 chr1 28421590 28421905 -253771759 - AluJo SINE Alu -3 309 5 931 136 32 7 chr1 28421937 28422092 -253771572 - MLT1A2 LTR MaLR -211 163 5 664 193 93 21 chr1 28422106 28422246 -253771418 + MIR SINE MIR 70 219 -43 2653 156 36 45 chr1 28422254 28422613 -253771051 + MLT1F LTR MaLR 11 372 -170 315 0 0 0 chr1 28422613 28422648 -253771016 + (TA)n Simple_repeat Simple_repeat 2 36 0 1997 147 19 3 chr1 28422652 28422959 -253770705 - AluJo SINE Alu 0 312 1 2653 156 36 45 chr1 28422959 28423121 -253770543 + MLT1F LTR MaLR 375 532 -10 191 300 40 0 chr1 28423197 28423247 -253770417 - L2 LINE L2 -10 3262 3211 402 326 36 26 chr1 28423323 28423516 -253770148 - MIR3 SINE MIR -8 200 6 321 325 68 18 chr1 28424305 28424468 -253769196 - MIR3 SINE MIR -28 180 10 2097 111 17 10 chr1 28424542 28424840 -253768824 + AluSx SINE Alu 1 300 -12 338 214 116 112 chr1 28424840 28424961 -253768703 + MIR SINE MIR 24 148 -114 1289 72 17 0 chr1 28424961 28425141 -253768523 + L1MA8 LINE L1 6106 6288 -3 338 214 116 112 chr1 28425141 28425243 -253768421 + MIR SINE MIR 148 248 -14 254 257 211 18 chr1 28425377 28425486 -253768178 + MIR SINE MIR 25 154 -108 285 136 0 0 chr1 28425587 28425631 -253768033 + Alu SINE Alu 252 295 -7 321 280 61 0 chr1 28425635 28425767 -253767897 + L1MC5 LINE L1 7649 7788 -173 849 142 8 0 chr1 28425776 28425910 -253767754 + AluSg/x SINE Alu 175 309 0 2234 118 0 10 chr1 28425918 28426214 -253767450 + AluSx SINE Alu 1 293 -19 2355 93 0 0 chr1 28426233 28426545 -253767119 + AluSq SINE Alu 1 312 -1 269 226 85 9 chr1 28426562 28426668 -253766996 + L1MC5 LINE L1 7823 7936 -25 641 286 35 15 chr1 28426815 28427018 -253766646 + MIR SINE MIR 43 249 -13 573 254 17 35 chr1 28427031 28427204 -253766460 + MIR SINE MIR 22 191 -71 263 293 51 70 chr1 28427301 28427458 -253766206 + L2 LINE L2 1129 1282 -2032 180 97 0 0 chr1 28427738 28427769 -253765895 + (A)n Simple_repeat Simple_repeat 1 31 0 2280 78 3 0 chr1 28427771 28428064 -253765600 + AluSc SINE Alu 2 295 -14 411 283 117 41 chr1 28428143 28428159 -253765505 - L2 LINE L2 -1 3271 3258 1928 144 3 13 chr1 28428159 28428458 -253765206 - AluJb SINE Alu -16 296 1 411 283 117 41 chr1 28428458 28428586 -253765078 - L2 LINE L2 -14 3258 3116 552 297 46 42 chr1 28428628 28428911 -253764753 - L2 LINE L2 -814 2500 2217 1071 285 155 12 chr1 28428936 28429427 -253764237 - MLT1L LTR MaLR -12 603 43 713 314 18 4 chr1 28429488 28429714 -253763950 + MIR SINE MIR 20 248 -14 2099 125 0 7 chr1 28430045 28430349 -253763315 + AluSx SINE Alu 1 302 -10 2114 131 0 0 chr1 28430512 28430817 -253762847 - AluSc SINE Alu 0 309 5 200 280 83 61 chr1 28430832 28430964 -253762700 + L2 LINE L2 3137 3271 -1 2170 107 0 7 chr1 28430981 28431302 -253762362 - AluSq SINE Alu 0 313 1 250 281 53 18 chr1 28431302 28431416 -253762248 + MIR3 SINE MIR 70 187 -21 500 132 0 0 chr1 28431633 28431709 -253761955 + AluSg/x SINE Alu 172 247 -63 223 269 75 67 chr1 28431716 28431850 -253761814 + L2 LINE L2 3137 3271 -1 372 296 87 5 chr1 28433038 28433219 -253760445 - MIR SINE MIR -39 223 30 655 226 18 24 chr1 28433991 28434155 -253759509 - MIR SINE MIR -71 191 29 1438 174 73 0 chr1 28434243 28434518 -253759146 + AluJb SINE Alu 1 295 -17 2129 97 0 0 chr1 28434526 28434809 -253758855 + AluSx SINE Alu 1 284 -24 222 0 79 0 chr1 28434809 28434847 -253758817 + (CA)n Simple_repeat Simple_repeat 2 42 0 698 251 51 15 chr1 28435178 28435373 -253758291 - MIR SINE MIR -2 260 59 2118 133 0 0 chr1 28435392 28435701 -253757963 - AluSx SINE Alu -3 309 1 997 96 0 0 chr1 28435701 28435836 -253757828 - AluSq/x SINE Alu -177 135 1 802 194 38 6 chr1 28436602 28436793 -253756871 + AluJo SINE Alu 119 314 0 1739 134 72 3 chr1 28436793 28437083 -253756581 + AluSx SINE Alu 1 310 -2 243 295 0 0 chr1 28437358 28437419 -253756245 - MIR SINE MIR -143 119 59 2309 95 0 6 chr1 28437549 28437864 -253755800 - AluSp SINE Alu 0 313 1 394 287 35 14 chr1 28437870 28438013 -253755651 - L2 LINE L2 0 3313 3168 429 238 30 0 chr1 28438077 28438178 -253755486 + MIR SINE MIR 38 141 -67 464 95 14 14 chr1 28438369 28438443 -253755221 - FRAM SINE Alu -77 99 26 227 252 128 2 chr1 28439220 28439321 -253754343 + MIR SINE MIR 55 147 -61 344 318 9 0 chr1 28439736 28439846 -253753818 - L2 LINE L2 0 3313 3203 438 243 164 13 chr1 28439927 28440079 -253753585 - MER5A DNA MER1_type -6 183 9 2155 97 7 3 chr1 28440528 28440826 -253752838 + AluSg SINE Alu 1 299 -11 420 303 12 31 chr1 28441513 28441675 -253751989 + MIR SINE MIR 51 209 -53 314 223 161 9 chr1 28441705 28441817 -253751847 - L2 LINE L2 -10 3303 3175 217 333 0 12 chr1 28441840 28441921 -253751743 - L2 LINE L2 -5 3267 3188 2245 102 0 13 chr1 28442946 28443251 -253750413 + AluSx SINE Alu 1 301 -11 211 255 0 0 chr1 28443276 28443323 -253750341 + L2 LINE L2 3248 3294 -19 386 303 29 77 chr1 28443365 28443573 -253750091 + MIR SINE MIR 20 217 -45 2190 108 3 3 chr1 28444198 28444505 -253749159 + AluSp SINE Alu 1 307 -6 223 311 0 0 chr1 28444567 28444628 -253749036 + MIR SINE MIR 103 163 -99 * 631 261 78 17 chr1 28444618 28444798 -253748866 - MIR SINE MIR -3 259 69 292 308 0 0 chr1 28444839 28444917 -253748747 + MIR SINE MIR 175 252 -10 2232 99 0 3 chr1 28445022 28445324 -253748340 - AluSq SINE Alu -12 301 1 259 242 45 15 chr1 28446150 28446216 -253747448 - L2 LINE L2 -1 3271 3204 207 0 0 0 chr1 28446454 28446477 -253747187 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1688 107 111 7 chr1 28446487 28446757 -253746907 + AluSg SINE Alu 1 298 -12 1691 155 10 17 chr1 28446765 28447062 -253746602 + AluJo SINE Alu 1 295 -17 580 254 18 100 chr1 28447071 28447247 -253746417 + MER102b DNA MER1_type 78 224 -1204 2342 71 3 7 chr1 28447247 28447555 -253746109 + AluSq SINE Alu 6 312 -1 580 254 18 100 chr1 28447555 28447657 -253746007 + MER102b DNA MER1_type 224 333 -8 356 283 100 0 chr1 28447709 28447829 -253745835 + MIR SINE MIR 106 237 -25 3041 112 89 49 chr1 28448988 28449038 -253744626 - MER39B LTR ERV1 -28 625 578 2254 101 3 0 chr1 28449038 28449344 -253744320 + AluSq SINE Alu 1 307 -6 3041 112 89 49 chr1 28449344 28449890 -253743774 - MER39B LTR ERV1 -75 578 5 282 263 45 51 chr1 28450934 28451090 -253742574 - L1ME3A LINE L1 -24 6146 5992 2235 99 0 3 chr1 28451682 28451984 -253741680 - AluSq SINE Alu -12 301 1 497 219 95 18 chr1 28451990 28452159 -253741505 - L1MC5 LINE L1 -54 7907 7726 1358 121 36 31 chr1 28452190 28452414 -253741250 + AluSg/x SINE Alu 77 301 -9 309 194 32 0 chr1 28452445 28452507 -253741157 + MER5A DNA MER1_type 39 102 -87 255 324 19 9 chr1 28452508 28452613 -253741051 + MER5A DNA MER1_type 66 171 -18 * 373 229 10 10 chr1 28452520 28452616 -253741048 - MER5A DNA MER1_type -66 123 28 517 259 196 2 chr1 28454556 28454765 -253738899 - MIR SINE MIR 0 262 13 425 252 87 0 chr1 28455620 28455735 -253737929 + MIR3 SINE MIR 76 200 -8 218 300 101 10 chr1 28455747 28455852 -253737812 - MIR3 SINE MIR -53 155 70 458 279 109 20 chr1 28457731 28457878 -253735786 - MER117 DNA MER1_type -31 166 7 267 217 0 0 chr1 28457889 28457949 -253735715 - MIR SINE MIR -68 140 81 764 113 0 0 chr1 28458251 28458357 -253735307 + AluJb SINE Alu 200 305 -7 182 315 123 14 chr1 28458359 28458432 -253735232 + MIR SINE MIR 30 110 -152 273 324 49 10 chr1 28458679 28458781 -253734883 - MIR3 SINE MIR -9 199 94 458 255 72 20 chr1 28459696 28459849 -253733815 + MIR3 SINE MIR 30 190 -18 429 288 65 6 chr1 28460324 28460494 -253733170 - MIR3 SINE MIR -22 186 7 267 260 51 102 chr1 28460745 28460827 -253732837 + L2 LINE L2 2925 2995 -277 1693 155 35 0 chr1 28460827 28461111 -253732553 - AluJb SINE Alu -18 294 1 267 260 51 102 chr1 28461111 28461205 -253732459 + L2 LINE L2 2995 3092 -180 728 182 101 76 chr1 28461225 28461423 -253732241 - MIR SINE MIR 0 262 60 354 303 66 0 chr1 28461478 28461600 -253732064 + L2 LINE L2 3136 3265 -7 347 306 69 74 chr1 28461601 28461817 -253731847 + L3 LINE CR1 1297 1511 -66 873 171 116 68 chr1 28461958 28462092 -253731572 + ORSL DNA AcHobo 2 128 -147 2239 108 0 0 chr1 28462092 28462387 -253731277 + AluSx SINE Alu 2 296 -16 873 171 116 68 chr1 28462387 28462412 -253731252 + ORSL DNA AcHobo 128 150 -125 1655 165 64 14 chr1 28462412 28462709 -253730955 - AluJb SINE Alu 0 312 1 873 171 116 68 chr1 28462709 28462799 -253730865 + ORSL DNA AcHobo 150 264 -11 288 283 36 48 chr1 28462820 28463050 -253730614 + L1MC4a LINE L1 2286 6173 -1 218 284 74 0 chr1 28463107 28463188 -253730476 + MIR SINE MIR 14 100 -162 480 247 82 19 chr1 28463215 28463373 -253730291 + MIR SINE MIR 84 251 -11 223 294 44 0 chr1 28464580 28464648 -253729016 - L3b LINE CR1 -188 1395 1325 213 339 191 11 chr1 28464772 28464961 -253728703 + MIR SINE MIR 29 251 -11 279 300 77 23 chr1 28464998 28465128 -253728536 - L3b LINE CR1 -104 1479 1343 302 322 81 23 chr1 28466118 28466292 -253727372 - MIR3 SINE MIR -22 186 3 376 231 92 31 chr1 28466932 28467062 -253726602 - MIR SINE MIR -75 187 50 305 256 60 23 chr1 28467917 28468050 -253725614 + L2 LINE L2 2954 3091 -181 289 293 37 0 chr1 28468087 28468169 -253725495 - L2 LINE L2 0 3272 3188 680 252 112 9 chr1 28468171 28468385 -253725279 - MIR SINE MIR 0 262 27 419 306 60 33 chr1 28468415 28468598 -253725066 - L2 LINE L2 -82 3190 3003 201 254 30 15 chr1 28468609 28468676 -253724988 - L2 LINE L2 -609 2705 2638 713 255 151 74 chr1 28468711 28468944 -253724720 - L2 LINE L2 -2 3311 3097 2132 54 0 0 chr1 28468944 28469202 -253724462 + AluY SINE Alu 38 295 -16 713 255 151 74 chr1 28469202 28469214 -253724450 - L2 LINE L2 -216 3097 3087 1877 142 7 0 chr1 28469214 28469525 -253724139 + AluSx SINE Alu 1 313 0 713 255 151 74 chr1 28469525 28469654 -253724010 - L2 LINE L2 -226 3087 2906 856 254 160 15 chr1 28469654 28469985 -253723679 - L2 LINE L2 -587 2727 2349 1580 186 19 19 chr1 28470028 28470340 -253723324 + AluJo SINE Alu 1 312 0 668 150 16 94 chr1 28470344 28470471 -253723193 + FLAM_A SINE Alu 1 117 -16 595 269 9 67 chr1 28471404 28471627 -253722037 + MIR SINE MIR 41 250 -12 215 321 38 19 chr1 28471644 28471750 -253721914 - MIR SINE MIR -84 124 17 291 339 9 18 chr1 28472112 28472221 -253721443 + MIR SINE MIR 30 137 -71 819 193 18 41 chr1 28472224 28472395 -253721269 - FRAM SINE Alu 0 40 1 2192 131 0 0 chr1 28472414 28472726 -253720938 - AluSx SINE Alu 0 312 1 547 256 50 127 chr1 28472873 28473009 -253720655 + LTR37B LTR ERV1 1 146 -322 1774 159 14 0 chr1 28473009 28473299 -253720365 - AluJb SINE Alu -18 294 1 547 256 50 127 chr1 28473299 28473333 -253720331 + LTR37B LTR ERV1 146 181 -287 2085 100 4 0 chr1 28473333 28473649 -253720015 - AluSq SINE Alu 0 317 1 547 256 50 127 chr1 28473649 28473980 -253719684 + LTR37B LTR ERV1 181 465 -3 182 167 0 0 chr1 28473984 28474020 -253719644 + MIR SINE MIR 109 144 -118 1369 97 0 0 chr1 28674067 28674252 -253519412 + AluSg/x SINE Alu 104 288 -22 912 224 0 0 chr1 28674281 28674446 -253519218 + FRAM SINE Alu 2 166 0 1728 201 48 30 chr1 28674469 28674878 -253518786 + L1M4 LINE L1 3804 4223 -1923 2086 98 7 23 chr1 28674878 28675183 -253518481 + AluSx SINE Alu 1 300 -12 1728 201 48 30 chr1 28675183 28675235 -253518429 + L1M4 LINE L1 4223 4273 -1873 2338 97 0 0 chr1 28675242 28675550 -253518114 + AluSg SINE Alu 1 308 -2 415 111 111 0 chr1 28675794 28675866 -253517798 + MER116 DNA Mariner 1 80 0 2370 80 5 80 chr1 28676057 28676443 -253517221 + L1PA14 LINE L1 5804 6160 -1 2177 117 0 0 chr1 28676558 28676866 -253516798 - AluSx SINE Alu -4 308 1 537 284 57 0 chr1 28677253 28677394 -253516270 + MIR3 SINE MIR 17 165 -43 942 209 60 60 chr1 28677402 28677615 -253516049 - L1MC4 LINE L1 -13 8029 7814 2567 42 0 3 chr1 28677615 28677927 -253515737 + AluY SINE Alu 1 311 0 942 209 60 60 chr1 28677927 28678044 -253515620 - L1MC4 LINE L1 -227 7815 7699 1382 177 26 15 chr1 28678057 28678323 -253515341 - AluJo SINE Alu -30 282 14 2200 207 123 6 chr1 28678353 28678898 -253514766 - L1MC4 LINE L1 -365 7677 7069 2179 103 0 13 chr1 28679536 28679847 -253513817 - AluSg SINE Alu -1 309 3 2156 78 3 68 chr1 28679855 28680176 -253513488 - AluSp SINE Alu -13 300 1 1502 158 10 45 chr1 28680196 28680487 -253513177 - AluJo SINE Alu -31 281 1 1986 111 3 7 chr1 28680535 28680833 -253512831 + AluY SINE Alu 2 298 -13 1430 80 5 0 chr1 28680835 28681023 -253512641 + AluSp SINE Alu 1 189 -124 1239 99 0 0 chr1 28681023 28681194 -253512470 + AluSp SINE Alu 138 308 -5 704 199 77 13 chr1 28681197 28681353 -253512311 + AluJo/FRAM SINE Alu 137 302 0 379 170 0 39 chr1 28681618 28681847 -253511817 + AluJo SINE Alu 1 302 0 2363 43 7 0 chr1 28682045 28682345 -253511319 + AluY SINE Alu 1 302 -9 2182 104 0 0 chr1 28682433 28682730 -253510934 + AluSx SINE Alu 1 297 -15 608 194 8 22 chr1 28682748 28682882 -253510782 + MER103 DNA DNA 32 163 -3 1793 142 0 4 chr1 28683006 28683281 -253510383 + AluSg SINE Alu 5 278 -32 183 42 0 0 chr1 28683281 28683305 -253510359 + (TAA)n Simple_repeat Simple_repeat 1 24 0 264 274 0 29 chr1 28683319 28683347 -253510317 + GA-rich Low_complexity Low_complexity 1 28 -71 2065 120 3 0 chr1 28683347 28683656 -253510008 + AluSx SINE Alu 1 310 -2 264 274 0 29 chr1 28683656 28683729 -253509935 + GA-rich Low_complexity Low_complexity 28 99 0 189 0 0 0 chr1 28683898 28683919 -253509745 + (TTTAA)n Simple_repeat Simple_repeat 4 24 0 2099 112 0 0 chr1 28683920 28684215 -253509449 - AluSx SINE Alu -17 295 1 189 234 43 0 chr1 28684323 28684370 -253509294 - MIR3 SINE MIR -3 205 157 369 0 0 0 chr1 28684563 28684604 -253509060 + (TTG)n Simple_repeat Simple_repeat 2 42 0 1954 120 0 0 chr1 28684614 28684888 -253508776 - AluSx SINE Alu -38 274 1 214 391 20 20 chr1 28684893 28685044 -253508620 - L2 LINE L2 -228 3044 2894 355 81 0 32 chr1 28685800 28685862 -253507802 + (TTCC)n Simple_repeat Simple_repeat 1 60 0 1835 137 38 7 chr1 28685862 28686154 -253507510 - AluSx SINE Alu -11 301 1 488 286 100 75 chr1 28686181 28686448 -253507216 + L1MEc LINE L1 1053 1312 -5322 2225 97 0 3 chr1 28686448 28686748 -253506916 + AluSq SINE Alu 1 299 -14 488 286 100 75 chr1 28686748 28686918 -253506746 + L1MEc LINE L1 1312 1607 -5027 864 127 0 8 chr1 28687007 28687133 -253506531 + AluJo/FLAM SINE Alu 2 126 -176 429 153 42 0 chr1 28687133 28687205 -253506459 + AluJ/FRAM SINE Alu 225 299 -13 496 271 72 18 chr1 28687290 28687456 -253506208 - L1ME LINE L1 -459 5662 5488 4313 153 38 73 chr1 28687505 28687611 -253506053 + L1MB4 LINE L1 4779 4887 -1293 1576 150 97 4 chr1 28687611 28687878 -253505786 + AluJb SINE Alu 1 292 -20 4313 153 38 73 chr1 28687878 28688139 -253505525 + L1MB4 LINE L1 4887 5156 -1024 1262 163 123 47 chr1 28688139 28688416 -253505248 + AluJo SINE Alu 5 302 0 4313 153 38 73 chr1 28688416 28688614 -253505050 + L1MB4 LINE L1 5156 5360 -820 2320 84 3 3 chr1 28688614 28688924 -253504740 + AluSx SINE Alu 1 310 -2 4313 153 38 73 chr1 28688924 28689209 -253504455 + L1MB4 LINE L1 5360 5654 -526 611 90 0 0 chr1 28689209 28689287 -253504377 - MADE1 DNA Mariner -2 78 1 4313 153 38 73 chr1 28689287 28689391 -253504273 + L1MB4 LINE L1 5654 5760 -420 1991 134 3 19 chr1 28689391 28689705 -253503959 - AluSx SINE Alu -3 309 1 4313 153 38 73 chr1 28689705 28689846 -253503818 + L1MB4 LINE L1 5760 5905 -275 2021 120 0 13 chr1 28689846 28689982 -253503682 + AluSx SINE Alu 1 137 -175 1971 118 52 0 chr1 28689982 28690269 -253503395 + AluSx SINE Alu 1 302 -10 2021 120 0 13 chr1 28690269 28690431 -253503233 + AluSx SINE Alu 137 295 -17 1885 131 3 38 chr1 28690436 28690749 -253502915 + AluSx SINE Alu 11 312 0 4313 153 38 73 chr1 28690749 28690942 -253502722 + L1MB4 LINE L1 5909 6025 -155 1664 185 0 35 chr1 28690942 28691256 -253502408 - AluJb SINE Alu -9 303 1 4313 153 38 73 chr1 28691256 28691368 -253502296 + L1MB4 LINE L1 6025 6139 -41 2221 90 0 7 chr1 28691370 28691670 -253501994 + AluSq SINE Alu 1 298 -15 789 88 9 0 chr1 28691680 28691794 -253501870 + AluSc SINE Alu 174 288 -21 246 241 24 0 chr1 28691902 28691987 -253501677 + L1ME3 LINE L1 6075 6161 -3 1988 103 41 0 chr1 28691995 28692285 -253501379 - AluSp SINE Alu -11 302 1 237 159 0 0 chr1 28692285 28692323 -253501341 + L1ME3 LINE L1 6118 6155 -7 265 242 33 66 chr1 28692629 28692720 -253500944 + MIR SINE MIR 38 125 -83 1672 148 0 39 chr1 28692816 28693121 -253500543 - AluJb SINE Alu -19 293 1 626 244 144 0 chr1 28693574 28693734 -253499930 - MER5A DNA MER1_type 0 189 7 497 242 16 0 chr1 28693736 28693860 -253499804 + L2 LINE L2 2192 2317 -997 2298 90 0 0 chr1 28693861 28694171 -253499493 - AluY SINE Alu 0 311 2 1059 63 0 0 chr1 28694183 28694310 -253499354 - AluSp SINE Alu -186 127 1 1325 273 145 39 chr1 28694310 28694658 -253499006 + L2 LINE L2 2310 2620 -693 1848 111 35 14 chr1 28694658 28694946 -253498718 - AluSx SINE Alu -18 294 1 1325 273 145 39 chr1 28694946 28695469 -253498195 + L2 LINE L2 2620 3297 -16 483 209 86 29 chr1 28695495 28695634 -253498030 + MIR SINE MIR 114 260 -2 2224 111 0 0 chr1 28696886 28697193 -253496471 - AluSg SINE Alu -3 307 1 469 259 41 14 chr1 28697899 28698046 -253495618 + MIR SINE MIR 32 182 -80 207 235 66 153 chr1 28698124 28698307 -253495357 + L2 LINE L2 3017 3183 -89 534 219 103 13 chr1 28699564 28699719 -253493945 + L2 LINE L2 2291 2459 -855 2235 89 0 0 chr1 28699719 28700011 -253493653 - AluSx SINE Alu -20 292 1 722 214 148 0 chr1 28700040 28700222 -253493442 + L2 LINE L2 3105 3313 0 259 256 51 13 chr1 28700229 28700307 -253493357 + MIR3 SINE MIR 77 157 -51 1593 157 18 14 chr1 28700349 28700649 -253493015 - AluJo SINE Alu 0 301 1 428 255 115 15 chr1 28700674 28700874 -253492790 + L2 LINE L2 2204 2423 -891 311 222 100 67 chr1 28701046 28701136 -253492528 + L2 LINE L2 3179 3271 -1 316 270 40 60 chr1 28701613 28701663 -253492001 - MIR SINE MIR -62 146 97 1592 154 95 0 chr1 28701663 28701936 -253491728 - AluSx SINE Alu -13 299 1 316 270 40 60 chr1 28701936 28702016 -253491648 - MIR SINE MIR -111 97 20 1955 118 0 22 chr1 28702073 28702386 -253491278 - AluSq SINE Alu -7 306 1 201 156 0 0 chr1 28702510 28702542 -253491122 + MER5A DNA MER1_type 135 166 -23 263 274 197 0 chr1 28702614 28702731 -253490933 - MER102a DNA MER1_type -29 301 162 593 285 35 25 chr1 28702890 28703090 -253490574 + MIR SINE MIR 35 236 -26 2148 119 0 0 chr1 28703174 28703484 -253490180 + AluSg SINE Alu 1 310 0 1746 134 7 39 chr1 28703526 28703831 -253489833 + AluJb SINE Alu 1 295 -17 188 250 42 0 chr1 28703831 28703879 -253489785 + MIR SINE MIR 190 239 -23 2579 209 135 32 chr1 28704130 28704268 -253489396 + L1ME3A LINE L1 5298 5420 -750 2321 84 0 10 chr1 28704268 28704577 -253489087 + AluSx SINE Alu 1 306 -6 2579 209 135 32 chr1 28704577 28705014 -253488650 + L1ME3A LINE L1 5420 5979 -191 1980 94 0 4 chr1 28705014 28705326 -253488338 + AluSq SINE Alu 20 330 0 2579 209 135 32 chr1 28705326 28705532 -253488132 + L1ME3A LINE L1 5979 6162 -8 362 250 164 23 chr1 28705776 28705904 -253487760 - L3 LINE CR1 -72 1505 1360 2226 83 0 0 chr1 28706305 28706595 -253487069 + AluY SINE Alu 1 290 -21 35 0 0 0 chr1 28706599 28706634 -253487030 + AT_rich Low_complexity Low_complexity 1 35 0 1650 143 0 0 chr1 28706712 28706964 -253486700 - AluSx SINE Alu -2 310 59 374 159 0 0 chr1 28707064 28707127 -253486537 + Alu SINE Alu 234 296 -6 2089 115 0 0 chr1 28707127 28707423 -253486241 + AluSx SINE Alu 1 296 -16 1950 120 7 7 chr1 28707424 28707724 -253485940 + AluSx SINE Alu 1 300 -12 834 78 0 0 chr1 28707764 28707879 -253485785 - AluSc SINE Alu -21 288 174 2221 90 0 7 chr1 28707889 28708189 -253485475 - AluSq SINE Alu -15 298 1 4335 153 38 72 chr1 28708191 28708303 -253485361 - L1MB4 LINE L1 -41 6139 6025 1664 185 0 35 chr1 28708303 28708617 -253485047 + AluJb SINE Alu 1 303 -9 4335 153 38 72 chr1 28708617 28708810 -253484854 - L1MB4 LINE L1 -155 6025 5827 1885 131 3 38 chr1 28708810 28709123 -253484541 - AluSx SINE Alu 0 312 11 2021 120 0 13 chr1 28709128 28709290 -253484374 - AluSx SINE Alu -17 295 137 1979 118 52 0 chr1 28709290 28709578 -253484086 - AluSx SINE Alu -9 303 1 2021 120 0 13 chr1 28709578 28709714 -253483950 - AluSx SINE Alu -175 137 1 4335 153 38 72 chr1 28709714 28709855 -253483809 - L1MB4 LINE L1 -357 5823 5679 1991 134 3 19 chr1 28709855 28710169 -253483495 + AluSx SINE Alu 1 309 -3 4335 153 38 72 chr1 28710169 28710273 -253483391 - L1MB4 LINE L1 -501 5679 5573 611 90 0 0 chr1 28710273 28710351 -253483313 + MADE1 DNA Mariner 1 78 -2 4335 153 38 72 chr1 28710351 28710636 -253483028 - L1MB4 LINE L1 -607 5573 5280 2320 84 3 3 chr1 28710636 28710946 -253482718 - AluSx SINE Alu -2 310 1 4335 153 38 72 chr1 28710946 28711141 -253482523 - L1MB4 LINE L1 -900 5280 5080 1293 165 122 54 chr1 28711141 28711420 -253482244 - AluJo SINE Alu 0 302 5 4335 153 38 72 chr1 28711420 28711681 -253481983 - L1MB4 LINE L1 -1100 5080 4887 1576 150 97 4 chr1 28711681 28711948 -253481716 - AluJb SINE Alu -20 292 1 4335 153 38 72 chr1 28711948 28712054 -253481610 - L1MB4 LINE L1 -1293 4887 4779 496 271 72 18 chr1 28712103 28712269 -253481395 + L1ME LINE L1 5488 5662 -459 429 153 42 0 chr1 28712354 28712426 -253481238 - AluJ/FRAM SINE Alu -13 299 225 864 127 0 8 chr1 28712426 28712552 -253481112 - AluJo/FLAM SINE Alu -176 126 2 472 288 100 77 chr1 28712641 28712811 -253480853 - L1MEc LINE L1 -5027 1607 1442 2225 97 0 3 chr1 28712811 28713111 -253480553 - AluSq SINE Alu -14 299 1 472 288 100 77 chr1 28713111 28713378 -253480286 - L1MEc LINE L1 -5192 1442 1053 1835 137 38 7 chr1 28713405 28713697 -253479967 + AluSx SINE Alu 1 301 -11 355 81 0 32 chr1 28713697 28713759 -253479905 + (GGAA)n Simple_repeat Simple_repeat 1 60 0 214 391 20 20 chr1 28714515 28714666 -253478998 + L2 LINE L2 2894 3044 -228 1954 120 0 0 chr1 28714671 28714945 -253478719 + AluSx SINE Alu 1 274 -38 369 0 0 0 chr1 28714955 28714996 -253478668 + (CAA)n Simple_repeat Simple_repeat 2 42 0 189 234 43 0 chr1 28715189 28715236 -253478428 + MIR3 SINE MIR 157 205 -3 2099 112 0 0 chr1 28715344 28715639 -253478025 + AluSx SINE Alu 1 295 -17 189 0 0 0 chr1 28715640 28715661 -253478003 + (TTAAA)n Simple_repeat Simple_repeat 4 24 0 2065 120 3 0 chr1 28715830 28716212 -253477452 - AluSx SINE Alu 0 383 1 183 42 0 0 chr1 28716254 28716278 -253477386 + (TTA)n Simple_repeat Simple_repeat 1 24 0 1793 142 0 4 chr1 28716278 28716553 -253477111 - AluSg SINE Alu -32 278 5 608 194 8 22 chr1 28716677 28716811 -253476853 - MER103 DNA DNA -3 163 32 2195 102 0 0 chr1 28716829 28717124 -253476540 - AluSg SINE Alu -15 295 1 1830 117 57 7 chr1 28717187 28717469 -253476195 - AluSx SINE Alu -14 298 3 1337 139 147 45 chr1 28717576 28717842 -253475822 + AluJb SINE Alu 4 296 -16 2359 41 7 3 chr1 28717911 28718206 -253475458 - AluY SINE Alu -15 296 1 246 273 141 16 chr1 28718209 28718330 -253475334 - MLT1L LTR MaLR -49 566 431 495 0 0 0 chr1 28718352 28718407 -253475257 + (TG)n Simple_repeat Simple_repeat 2 56 0 2007 107 4 0 chr1 28718409 28718689 -253474975 - AluSx SINE Alu -30 282 2 382 319 112 21 chr1 28718809 28719050 -253474614 - MLT1L LTR MaLR -339 276 14 254 159 0 0 chr1 28719133 28719185 -253474479 + L1MB7 LINE L1 5663 5714 -460 1716 175 129 5 chr1 28719555 28719927 -253473737 + L1MB7 LINE L1 5706 6123 -61 1875 155 3 0 chr1 28719927 28720230 -253473434 - AluSx SINE Alu -8 304 1 2284 89 0 10 chr1 28720233 28720546 -253473118 - AluSp SINE Alu -3 310 1 1693 143 59 0 chr1 28720554 28720827 -253472837 - AluSx SINE Alu -23 289 1 2393 46 3 16 chr1 28722014 28722318 -253471346 + AluY SINE Alu 1 300 -11 2042 123 0 10 chr1 28722554 28722855 -253470809 + AluSx SINE Alu 1 298 -14 1361 167 0 0 chr1 28722963 28723179 -253470485 - AluJo SINE Alu -11 301 86 2134 88 24 14 chr1 28723185 28723343 -253470321 - AluSx SINE Alu -14 298 134 2118 71 29 32 chr1 28723343 28723651 -253470013 - AluSq SINE Alu -6 307 1 2134 88 24 14 chr1 28723651 28723787 -253469877 - AluSx SINE Alu -178 134 1 1450 142 58 84 chr1 28723909 28724088 -253469576 - AluJb SINE Alu -11 301 132 1995 112 0 0 chr1 28724088 28724364 -253469300 - AluSx SINE Alu -12 300 25 1450 142 58 84 chr1 28724364 28724493 -253469171 - AluJb SINE Alu -180 132 1 625 164 0 0 chr1 28724578 28724682 -253468982 + U13 snRNA snRNA 1 104 0 2318 82 0 0 chr1 28724699 28725002 -253468662 + AluSg SINE Alu 1 303 -7 2167 104 0 10 chr1 28725335 28725642 -253468022 + AluSp SINE Alu 1 304 -9 1924 145 3 0 chr1 28725645 28725948 -253467716 + AluSx SINE Alu 1 304 -8 1716 175 129 5 chr1 28725948 28726320 -253467344 - L1MB7 LINE L1 -61 6123 5706 281 161 0 0 chr1 28726690 28726742 -253466922 - L1MB7 LINE L1 -464 5714 5663 499 319 143 43 chr1 28726825 28727186 -253466478 + MLT1L LTR MaLR 14 338 -277 2078 102 0 0 chr1 28727186 28727469 -253466195 + AluSg SINE Alu 2 284 -26 315 0 0 0 chr1 28727469 28727504 -253466160 + (CA)n Simple_repeat Simple_repeat 2 36 0 499 319 143 43 chr1 28727504 28727673 -253465991 + MLT1L LTR MaLR 337 598 -17 1370 148 31 113 chr1 28727701 28728019 -253465645 - AluJb SINE Alu -17 295 4 1712 116 45 68 chr1 28728126 28728436 -253465228 + AluSx SINE Alu 3 305 -7 2183 109 0 0 chr1 28728499 28728793 -253464871 + AluSg SINE Alu 1 294 -16 2180 86 0 3 chr1 28728835 28729125 -253464539 + AluY SINE Alu 13 301 -10 2028 120 0 0 chr1 28729286 28729610 -253464054 + AluSx SINE Alu 1 324 0 2816 126 2 26 chr1 28729670 28729791 -253463873 - MER41B LTR ERV1 0 635 513 2118 72 41 0 chr1 28729791 28730083 -253463581 + AluY SINE Alu 1 304 -7 2816 126 2 26 chr1 28730083 28730413 -253463251 - MER41B LTR ERV1 -122 513 195 816 192 53 0 chr1 28730414 28730565 -253463099 - AluJ SINE Alu -21 291 133 498 64 96 0 chr1 28730565 28730721 -253462943 + (TA)n Simple_repeat Simple_repeat 2 172 0 884 129 0 0 chr1 28730724 28730848 -253462816 - AluJ SINE Alu -188 124 1 1417 111 19 0 chr1 28730849 28731057 -253462607 - MER41B LTR ERV1 -423 212 1 5394 97 5 92 chr1 28731057 28731725 -253461939 - MER41B-int LTR ERV1 0 7756 7031 2177 71 0 0 chr1 28731725 28732044 -253461620 + AluY SINE Alu 1 319 0 2197 109 0 3 chr1 28732049 28732360 -253461304 + AluSg SINE Alu 1 310 0 5394 97 5 92 chr1 28732360 28732569 -253461095 - MER41B-int LTR ERV1 -729 7027 6801 2206 102 0 7 chr1 28732569 28732872 -253460792 - AluSp SINE Alu -11 302 2 5394 97 5 92 chr1 28732872 28733094 -253460570 - MER41B-int LTR ERV1 -955 6801 6561 2032 129 0 0 chr1 28733094 28733388 -253460276 - AluSx SINE Alu -18 294 1 2432 63 0 0 chr1 28733396 28733698 -253459966 - AluY SINE Alu -9 302 1 5394 97 5 92 chr1 28733698 28733839 -253459825 - MER41B-int LTR ERV1 -1202 6554 6402 2352 77 7 0 chr1 28733839 28734139 -253459525 - AluSx SINE Alu -10 302 1 5394 97 5 92 chr1 28734139 28734276 -253459388 - MER41B-int LTR ERV1 -1354 6402 4945 * 10654 105 32 43 chr1 28734275 28735225 -253458439 - MER41-int LTR ERV1 -4171 1775 816 1473 119 70 0 chr1 28735225 28735452 -253458212 - AluSg/x SINE Alu -4 308 66 10654 105 32 43 chr1 28735452 28735561 -253458103 - MER41-int LTR ERV1 -5130 816 707 1992 114 0 0 chr1 28735561 28735865 -253457799 + AluSg SINE Alu 2 305 0 10654 105 32 43 chr1 28735865 28736543 -253457121 - MER41-int LTR ERV1 -5239 707 283 899 105 8 30 chr1 28736543 28736676 -253456988 - FLAM_C SINE Alu -13 130 1 326 50 0 0 chr1 28736676 28736716 -253456948 - MER41-int LTR ERV1 -5666 280 241 608 215 0 0 chr1 28736716 28736823 -253456841 + FRAM SINE Alu 38 144 -32 216 0 0 0 chr1 28736823 28736847 -253456817 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 2356 88 0 0 chr1 28736879 28737187 -253456477 + AluSg SINE Alu 1 308 -2 415 111 111 0 chr1 28737431 28737503 -253456161 + MER116 DNA Mariner 1 80 0 2370 80 5 80 chr1 28737694 28738080 -253455584 + L1PA14 LINE L1 5804 6160 -1 2177 117 0 0 chr1 28738195 28738503 -253455161 - AluSx SINE Alu -4 308 1 537 284 57 0 chr1 28738890 28739031 -253454633 + MIR3 SINE MIR 17 165 -43 942 209 60 60 chr1 28739039 28739252 -253454412 - L1MC4 LINE L1 -13 8029 7814 2567 42 0 3 chr1 28739252 28739564 -253454100 + AluY SINE Alu 1 311 0 942 209 60 60 chr1 28739564 28739681 -253453983 - L1MC4 LINE L1 -227 7815 7699 1382 177 26 15 chr1 28739694 28739960 -253453704 - AluJo SINE Alu -30 282 14 2200 207 123 6 chr1 28739990 28740535 -253453129 - L1MC4 LINE L1 -365 7677 7069 2179 103 0 13 chr1 28741173 28741484 -253452180 - AluSg SINE Alu -1 309 3 2156 78 3 68 chr1 28741492 28741813 -253451851 - AluSp SINE Alu -13 300 1 1502 158 10 45 chr1 28741833 28742124 -253451540 - AluJo SINE Alu -31 281 1 1986 111 3 7 chr1 28742172 28742470 -253451194 + AluY SINE Alu 2 298 -13 1430 80 5 0 chr1 28742472 28742660 -253451004 + AluSp SINE Alu 1 189 -124 1239 99 0 0 chr1 28742660 28742831 -253450833 + AluSp SINE Alu 138 308 -5 704 199 77 13 chr1 28742834 28742990 -253450674 + AluJo/FRAM SINE Alu 137 302 0 379 170 0 39 chr1 28743255 28743484 -253450180 + AluJo SINE Alu 1 302 0 2363 43 7 0 chr1 28743682 28743982 -253449682 + AluY SINE Alu 1 302 -9 2019 91 18 7 chr1 28744070 28744356 -253449308 + AluSx SINE Alu 1 289 -23 27 0 0 0 chr1 28744446 28744473 -253449191 + AT_rich Low_complexity Low_complexity 1 27 0 2336 50 0 0 chr1 28744505 28744819 -253448845 - AluY SINE Alu 0 314 1 217 231 96 0 chr1 28745298 28745350 -253448314 + MIR3 SINE MIR 115 171 -37 230 235 29 15 chr1 28746414 28746482 -253447182 + G-rich Low_complexity Low_complexity 1 69 0 215 146 0 83 chr1 28748342 28748390 -253445274 - MIR SINE MIR -29 233 190 1425 153 4 4 chr1 28748395 28748630 -253445034 + AluJb SINE Alu 60 294 -18 2190 90 7 0 chr1 28748633 28748922 -253444742 + AluSx SINE Alu 1 291 -21 410 262 40 47 chr1 28748938 28749087 -253444577 - MIR SINE MIR -74 188 41 1940 136 7 0 chr1 28749379 28749673 -253443991 + AluSx SINE Alu 1 296 -16 648 282 248 21 chr1 28750022 28750441 -253443223 + L3 LINE CR1 966 1479 -98 257 214 29 14 chr1 28750477 28750547 -253443117 + MIR SINE MIR 112 182 -80 1589 130 108 11 chr1 28750799 28751068 -253442596 + AluSq SINE Alu 1 295 -18 2343 86 0 0 chr1 28751125 28751427 -253442237 + AluSg SINE Alu 1 302 -8 753 106 0 35 chr1 28751453 28751566 -253442098 + AluSg/x SINE Alu 184 292 -17 599 214 117 41 chr1 28752020 28752216 -253441448 + MIR SINE MIR 23 233 -29 1144 140 105 143 chr1 28752909 28753130 -253440534 - AluJb SINE Alu 0 332 126 2295 53 11 0 chr1 28753130 28753411 -253440253 + AluSp SINE Alu 5 288 -25 1144 140 105 143 chr1 28753411 28753533 -253440131 - AluJb SINE Alu -206 126 1 668 188 0 0 chr1 28753578 28753690 -253439974 - FLAM_C SINE Alu -30 113 2 1966 107 0 57 chr1 28754083 28754400 -253439264 - AluSx SINE Alu -13 299 1 2259 104 0 3 chr1 28754412 28754721 -253438943 - AluSx SINE Alu -4 308 1 260 358 62 19 chr1 28755289 28755451 -253438213 - MER5A DNA MER1_type -20 169 1 863 238 119 55 chr1 28756326 28756654 -253437010 - L2 LINE L2 -4 3309 2961 1026 75 0 0 chr1 28756827 28756960 -253436704 + AluSq/x SINE Alu 1 133 -180 1748 156 7 7 chr1 28756974 28757269 -253436395 - AluSx SINE Alu -17 295 1 216 0 0 0 chr1 28757292 28757316 -253436348 + (A)n Simple_repeat Simple_repeat 1 24 0 1633 147 0 23 chr1 28757321 28757587 -253436077 + AluJb SINE Alu 1 260 -52 688 267 197 29 chr1 28757650 28757965 -253435699 - L2 LINE L2 -9 3304 2937 2084 97 23 0 chr1 28757965 28758264 -253435400 - AluSx SINE Alu -6 306 1 2128 119 0 0 chr1 28758292 28758594 -253435070 + AluSq SINE Alu 1 302 -11 1416 164 27 79 chr1 28758615 28758732 -253434932 + AluJb SINE Alu 1 122 -190 234 0 0 0 chr1 28758732 28758758 -253434906 + (TA)n Simple_repeat Simple_repeat 2 27 0 1873 138 7 3 chr1 28758758 28759062 -253434602 - AluSx SINE Alu -7 305 1 1416 164 27 79 chr1 28759062 28759272 -253434392 + AluJb SINE Alu 120 312 0 180 77 0 0 chr1 28759282 28759308 -253434356 + (GGGGA)n Simple_repeat Simple_repeat 4 29 0 322 292 30 77 chr1 28759369 28759537 -253434127 - L2 LINE L2 -475 2839 2680 * 461 326 0 21 chr1 28759526 28759667 -253433997 - MIR SINE MIR -122 140 3 * 1687 208 61 113 chr1 28759667 28759974 -253433690 + L2 LINE L2 2435 2756 -557 1587 171 4 4 chr1 28759974 28760238 -253433426 + AluJo SINE Alu 1 264 -48 1687 208 61 113 chr1 28760238 28760348 -253433316 + L2 LINE L2 2756 2870 -443 2007 110 0 17 chr1 28760348 28760660 -253433004 + AluSx SINE Alu 1 312 0 1687 208 61 113 chr1 28760660 28760947 -253432717 + L2 LINE L2 2870 3064 -249 2235 87 0 3 chr1 28760947 28761247 -253432417 + AluSc SINE Alu 1 299 -10 1687 208 61 113 chr1 28761247 28761485 -253432179 + L2 LINE L2 3064 3313 0 298 167 19 0 chr1 28764527 28764581 -253429083 + U7 snRNA snRNA 2 56 -7 257 133 67 83 chr1 28764559 28764619 -253429045 - U7 snRNA snRNA -3 60 2 * 2070 92 0 83 chr1 28764712 28765050 -253428614 - AluSx SINE Alu -2 310 1 979 155 7 0 chr1 28765069 28765224 -253428440 - AluJo/FRAM SINE Alu -23 289 134 1816 137 30 20 chr1 28765224 28765523 -253428141 - AluJb SINE Alu -8 304 3 2176 86 19 26 chr1 28765528 28765841 -253427823 - AluSx SINE Alu -1 311 1 23 0 0 0 chr1 28765844 28765867 -253427797 + AT_rich Low_complexity Low_complexity 1 23 0 1906 120 43 7 chr1 28765890 28766191 -253427473 - AluSx SINE Alu 0 312 1 322 292 72 82 chr1 28766377 28766513 -253427151 + L2 LINE L2 2614 2749 -565 1570 94 197 4 chr1 28766513 28766767 -253426897 - AluSq SINE Alu 0 303 1 322 292 72 82 chr1 28766767 28766825 -253426839 + L2 LINE L2 2749 2806 -508 590 309 34 90 chr1 28766853 28767232 -253426432 + L2 LINE L2 2911 3268 -4 1754 171 0 0 chr1 28767300 28767587 -253426077 - AluJb SINE Alu -25 287 1 288 272 181 69 chr1 28767600 28767760 -253425904 - MIR SINE MIR -46 216 40 238 286 117 99 chr1 28767953 28768166 -253425498 + LTR16A1 LTR ERVL 179 395 -62 1567 173 20 14 chr1 28768215 28768510 -253425154 + AluJb SINE Alu 1 297 -15 327 256 195 49 chr1 28768779 28768943 -253424721 + MIR SINE MIR 75 262 0 6882 61 5 28 chr1 28769442 28770514 -253423150 - SVA Other Other -599 1386 534 456 77 29 19 chr1 28770541 28771540 -253422124 - SVA Other Other -618 768 664 227 152 0 0 chr1 28771541 28771574 -253422090 + G-rich Low_complexity Low_complexity 129 161 0 653 229 117 11 chr1 28771596 28771775 -253421889 - MIR SINE MIR -60 202 5 2029 157 3 0 chr1 28771911 28772217 -253421447 + AluSx SINE Alu 3 309 -3 2440 70 0 3 chr1 28772227 28772545 -253421119 + AluSp SINE Alu 1 317 0 680 197 92 0 chr1 28772547 28772699 -253420965 + L1MA10 LINE L1 6169 6334 0 335 289 101 46 chr1 28772696 28772914 -253420750 + L1ME LINE L1 5426 5655 -511 * 805 40 0 0 chr1 28772918 28773017 -253420647 + HY3 scRNA scRNA 2 100 -1 186 43 0 0 chr1 28773020 28773043 -253420621 + (A)n Simple_repeat Simple_repeat 1 23 0 2143 134 3 3 chr1 28773044 28773350 -253420314 + AluSx SINE Alu 1 306 -6 2261 130 3 15 chr1 28773412 28773736 -253419928 + 7SLRNA srpRNA srpRNA 1 320 0 428 159 0 0 chr1 28773746 28773809 -253419855 + AluJ/FLAM SINE Alu 4 66 -246 658 185 134 13 chr1 28773826 28773983 -253419681 + MIR SINE MIR 31 206 -56 310 127 14 99 chr1 28774056 28774127 -253419537 + FLAM_A SINE Alu 68 132 -1 899 213 119 67 chr1 28774131 28774534 -253419130 + L1M4 LINE L1 4711 5134 -1012 2268 112 0 0 chr1 28774534 28774901 -253418763 + AluSg SINE Alu 1 367 0 310 289 11 22 chr1 28774901 28774991 -253418673 - MIR SINE MIR -148 114 26 2485 68 7 0 chr1 28775046 28775340 -253418324 - AluSg SINE Alu -13 297 2 2497 74 0 0 chr1 28775415 28775713 -253417951 - AluY SINE Alu -9 302 5 471 282 126 11 chr1 28775986 28776174 -253417490 + MIR SINE MIR 53 259 -3 321 311 30 7 chr1 28776217 28776352 -253417312 + MIR SINE MIR 102 239 -23 2202 136 0 0 chr1 28776514 28776815 -253416849 - AluSx SINE Alu -11 301 1 1870 191 0 0 chr1 28776827 28777136 -253416528 - AluJb SINE Alu -3 309 1 2282 109 0 0 chr1 28777169 28777471 -253416193 + AluSx SINE Alu 7 308 -4 1007 213 0 0 chr1 28777482 28777656 -253416008 + AluJb SINE Alu 138 311 -1 2120 211 112 27 chr1 28777670 28778079 -253415585 + L1ME2 LINE L1 3804 4177 -1969 2244 98 7 23 chr1 28778079 28778384 -253415280 + AluSx SINE Alu 1 300 -12 2120 211 112 27 chr1 28778384 28778443 -253415221 + L1ME2 LINE L1 4177 4230 -1916 2087 124 34 3 chr1 28778443 28778734 -253414930 + AluSx SINE Alu 1 300 -12 2120 211 112 27 chr1 28778734 28778995 -253414669 + L1ME2 LINE L1 4230 4596 -1550 2516 79 3 0 chr1 28779032 28779337 -253414327 + AluY SINE Alu 1 306 -5 423 241 27 18 chr1 28779375 28779487 -253414177 + MIR SINE MIR 1 113 -149 1644 189 43 23 chr1 28779497 28779798 -253413866 - AluJb SINE Alu -5 307 1 2173 148 0 0 chr1 28779821 28780131 -253413533 - AluSx SINE Alu -2 310 1 2163 97 3 21 chr1 28780141 28780455 -253413209 - AluSq SINE Alu 0 309 1 2987 214 48 35 chr1 28780470 28780634 -253413030 + L1ME2 LINE L1 5320 5480 -684 2364 106 0 0 chr1 28780634 28780927 -253412737 + AluSg SINE Alu 1 293 -17 2158 108 3 10 chr1 28780932 28781229 -253412435 + AluSq SINE Alu 6 300 -13 2987 214 48 35 chr1 28781229 28781335 -253412329 + L1ME2 LINE L1 5483 5586 -578 1829 148 28 3 chr1 28781335 28781626 -253412038 - AluJb SINE Alu -14 298 1 2987 214 48 35 chr1 28781626 28782179 -253411485 + L1ME2 LINE L1 5586 6161 -3 2140 111 40 0 chr1 28782179 28782477 -253411187 - AluSp SINE Alu -3 310 1 241 242 33 66 chr1 28782821 28782912 -253410752 + MIR SINE MIR 38 125 -83 1821 142 0 57 chr1 28782982 28783313 -253410351 - AluJb SINE Alu 0 312 1 319 254 37 90 chr1 28783672 28783806 -253409858 - MIR3 SINE MIR -46 162 36 1634 174 0 75 chr1 28784230 28784551 -253409113 + AluJb SINE Alu 1 297 -15 269 217 84 12 chr1 28784556 28784639 -253409025 - MIR SINE MIR -127 135 47 2205 102 11 0 chr1 28784797 28785104 -253408560 - AluSq SINE Alu 0 310 1 2022 134 3 38 chr1 28785105 28785418 -253408246 - AluSx SINE Alu -10 302 1 316 284 29 20 chr1 28785469 28785571 -253408093 - MIR SINE MIR -147 115 13 484 271 206 0 chr1 28785844 28786043 -253407621 + L3 LINE CR1 1334 1573 -4 445 245 45 60 chr1 28786071 28786218 -253407446 + MIR SINE MIR 5 144 -97 2431 99 0 0 chr1 28786218 28786521 -253407143 + AluSg SINE Alu 1 303 -7 445 245 45 60 chr1 28786521 28786554 -253407110 + MIR SINE MIR 144 176 -65 379 301 166 5 chr1 28787227 28787420 -253406244 + MIR SINE MIR 6 229 -33 711 176 171 27 chr1 28787528 28787715 -253405949 + AluJo SINE Alu 83 296 -16 364 101 14 0 chr1 28787814 28787880 -253405784 - LTR23 LTR ERV1 -57 388 314 725 150 0 64 chr1 28787881 28788021 -253405643 - FLAM_C SINE Alu -2 131 1 391 281 26 9 chr1 28788180 28788294 -253405370 - MIR SINE MIR -46 216 101 370 307 95 58 chr1 28788508 28788782 -253404882 - L2 LINE L2 0 3272 2989 587 244 144 0 chr1 28789683 28789843 -253403821 - MER5A DNA MER1_type 0 189 7 466 242 16 0 chr1 28789845 28789969 -253403695 + L2 LINE L2 2192 2317 -997 2460 90 0 0 chr1 28789970 28790280 -253403384 - AluY SINE Alu 0 311 2 1135 65 0 14 chr1 28790281 28790419 -253403245 - AluSp SINE Alu -177 136 1 1219 276 144 38 chr1 28790419 28790767 -253402897 + L2 LINE L2 2310 2620 -693 2000 111 35 14 chr1 28790767 28791055 -253402609 - AluSx SINE Alu -18 294 1 1219 276 144 38 chr1 28791055 28791591 -253402073 + L2 LINE L2 2620 3310 -3 454 209 86 29 chr1 28791604 28791743 -253401921 + MIR SINE MIR 114 260 -2 2387 111 0 0 chr1 28792995 28793302 -253400362 - AluSg SINE Alu -3 307 1 445 259 41 14 chr1 28794008 28794155 -253399509 + MIR SINE MIR 32 182 -80 184 240 66 153 chr1 28794233 28794416 -253399248 + L2 LINE L2 3017 3183 -89 494 246 84 0 chr1 28795686 28795828 -253397836 + L2 LINE L2 2306 2459 -855 2390 89 0 0 chr1 28795828 28796120 -253397544 - AluSx SINE Alu -20 292 1 674 220 148 0 chr1 28796149 28796331 -253397333 + L2 LINE L2 3105 3313 0 249 256 51 13 chr1 28796338 28796416 -253397248 + MIR3 SINE MIR 77 157 -51 1740 157 18 14 chr1 28796458 28796758 -253396906 - AluJo SINE Alu 0 301 1 401 270 110 10 chr1 28796783 28796983 -253396681 + L2 LINE L2 2204 2423 -891 289 222 100 67 chr1 28797155 28797245 -253396419 + L2 LINE L2 3179 3271 -1 293 270 40 60 chr1 28797722 28797772 -253395892 - MIR SINE MIR -62 146 97 1732 154 95 0 chr1 28797772 28798045 -253395619 - AluSx SINE Alu -13 299 1 293 270 40 60 chr1 28798045 28798125 -253395539 - MIR SINE MIR -111 97 20 2308 107 0 13 chr1 28798182 28798492 -253395172 - AluSq SINE Alu -7 306 1 192 156 0 0 chr1 28798616 28798648 -253395016 + MER5A DNA MER1_type 135 166 -23 258 274 197 0 chr1 28798720 28798837 -253394827 - MER102b DNA MER1_type -29 312 173 559 285 35 25 chr1 28798996 28799196 -253394468 + MIR SINE MIR 35 236 -26 2316 119 0 0 chr1 28799280 28799590 -253394074 + AluSg SINE Alu 1 310 0 1901 134 7 39 chr1 28799632 28799937 -253393727 + AluJb SINE Alu 1 295 -17 181 250 42 0 chr1 28799937 28799985 -253393679 + MIR SINE MIR 190 239 -23 2453 217 134 31 chr1 28800236 28800374 -253393290 + L1ME3A LINE L1 5298 5420 -750 2505 81 0 10 chr1 28800374 28800683 -253392981 + AluSx SINE Alu 1 306 -6 2453 217 134 31 chr1 28800683 28801120 -253392544 + L1ME3A LINE L1 5420 5979 -191 2123 94 0 4 chr1 28801120 28801432 -253392232 + AluSq SINE Alu 20 330 0 2453 217 134 31 chr1 28801432 28801638 -253392026 + L1ME3A LINE L1 5979 6162 -8 337 250 164 23 chr1 28801882 28802010 -253391654 - L3 LINE CR1 -72 1505 1360 2386 91 0 0 chr1 28802411 28802709 -253390955 + AluY SINE Alu 1 298 -13 31 0 0 0 chr1 28802709 28802740 -253390924 + AT_rich Low_complexity Low_complexity 1 31 0 2195 152 0 0 chr1 28802818 28803128 -253390536 - AluSx SINE Alu -2 310 1 290 259 44 30 chr1 28803167 28803302 -253390362 + L1MC5 LINE L1 7310 7446 -515 394 215 97 0 chr1 28803339 28803432 -253390232 + L1ME2 LINE L1 6063 6164 0 1976 155 3 3 chr1 28803442 28803732 -253389932 + AluJb SINE Alu 1 290 -22 2218 71 0 8 chr1 28803830 28804097 -253389567 + AluSq SINE Alu 1 265 -48 985 212 30 26 chr1 28805155 28805424 -253388240 + L1 LINE L1 4965 5234 -912 500 133 42 17 chr1 28805535 28805655 -253388009 + AluSc SINE Alu 184 306 -3 425 311 17 0 chr1 28806136 28806255 -253387409 + MIR SINE MIR 80 200 -62 2076 123 3 3 chr1 28806270 28806562 -253387102 - AluSq SINE Alu -21 292 1 190 263 0 0 chr1 28806586 28806624 -253387040 + L2 LINE L2 3255 3292 -21 278 100 0 0 chr1 28807183 28807223 -253386441 + Alu SINE Alu 7 46 -254 21 0 0 0 chr1 28807255 28807276 -253386388 + AT_rich Low_complexity Low_complexity 1 21 0 241 287 0 29 chr1 28808227 28808363 -253385301 + (CGGGG)n Simple_repeat Simple_repeat 4 135 0 1793 124 34 34 chr1 28809151 28809442 -253384222 + AluSx SINE Alu 18 308 -4 1385 154 77 18 chr1 28809452 28809724 -253383940 + AluJo SINE Alu 2 289 -23 2327 99 7 0 chr1 28810145 28810449 -253383215 - AluSp SINE Alu -7 306 1 2352 121 0 0 chr1 28810589 28810895 -253382769 - AluSx SINE Alu -6 306 1 631 225 0 0 chr1 28810904 28811033 -253382631 - FLAM_A SINE Alu -1 141 13 21 0 0 0 chr1 28811041 28811062 -253382602 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr1 28811154 28811184 -253382480 + AT_rich Low_complexity Low_complexity 1 30 0 1824 118 4 0 chr1 28811233 28811478 -253382186 + AluSg SINE Alu 1 246 -64 21 36 0 0 chr1 28811915 28811943 -253381721 + GC_rich Low_complexity Low_complexity 1 28 0 347 250 107 9 chr1 28814180 28814292 -253379372 - MIR SINE MIR -20 242 120 182 133 0 0 chr1 28814961 28814991 -253378673 - MIR SINE MIR -61 147 118 2211 84 0 58 chr1 28815001 28815310 -253378354 - AluSc SINE Alu -18 291 1 1799 128 25 4 chr1 28815338 28815619 -253378045 + AluSx SINE Alu 1 287 -25 714 179 0 0 chr1 28816059 28816182 -253377482 - FRAM SINE Alu -30 146 24 1182 234 89 3 chr1 28816184 28816466 -253377198 + MER97b DNA MER1_type? 230 535 -518 317 210 121 9 chr1 28816446 28816467 -253377197 + MER97a DNA MER1_type? 781 798 -96 * 2495 90 0 0 chr1 28816467 28816777 -253376887 + AluY SINE Alu 1 310 -1 317 210 121 9 chr1 28816777 28816903 -253376761 + MER97a DNA MER1_type? 798 891 -3 1307 159 56 21 chr1 28816968 28817129 -253376535 - AluJo SINE Alu -8 304 131 2269 94 0 23 chr1 28817129 28817428 -253376236 - AluSg SINE Alu -18 292 1 1307 159 56 21 chr1 28817428 28817499 -253376165 - AluJo SINE Alu -181 131 64 1924 150 20 0 chr1 28817502 28817796 -253375868 - AluJb SINE Alu -12 300 1 390 252 17 34 chr1 28817799 28817918 -253375746 + MER96B DNA MER1_type? 301 417 0 479 213 0 90 chr1 28817918 28817997 -253375667 - MIR SINE MIR -70 192 126 2270 93 3 17 chr1 28817997 28818299 -253375365 + AluSc SINE Alu 1 298 -11 479 213 0 90 chr1 28818299 28818341 -253375323 - MIR SINE MIR -136 126 82 949 122 15 0 chr1 28818347 28818478 -253375186 - AluSq/x SINE Alu -179 133 1 2418 93 3 0 chr1 28818492 28818792 -253374872 - AluSp SINE Alu -12 301 1 3300 98 14 8 chr1 28818792 28819282 -253374382 - Tigger1 DNA MER2_type -939 1479 987 378 42 0 0 chr1 28819282 28819330 -253374334 + (TG)n Simple_repeat Simple_repeat 1 48 0 * 399 21 0 0 chr1 28819329 28819377 -253374287 + (GA)n Simple_repeat Simple_repeat 1 48 0 242 161 18 89 chr1 28819558 28819670 -253373994 + C-rich Low_complexity Low_complexity 5 108 0 330 227 72 82 chr1 28820071 28820168 -253373496 + L1MC4 LINE L1 6605 6700 -1342 782 120 0 0 chr1 28820181 28820298 -253373366 - FLAM_C SINE Alu -16 117 1 313 269 43 0 chr1 28820720 28820813 -253372851 - MIR SINE MIR -58 150 54 2207 62 22 4 chr1 28820825 28821098 -253372566 + AluY SINE Alu 17 294 -17 434 285 54 8 chr1 28821187 28821317 -253372347 + MIR SINE MIR 18 153 -109 1628 143 57 57 chr1 28821378 28821541 -253372123 - AluJo SINE Alu -12 300 135 2175 134 0 3 chr1 28821541 28821839 -253371825 - AluSc SINE Alu -12 297 1 1628 143 57 57 chr1 28821839 28821975 -253371689 - AluJo SINE Alu -176 136 1 1559 92 3 176 chr1 28822036 28822217 -253371447 - AluSc SINE Alu 0 299 215 2759 10 7 0 chr1 28822217 28822512 -253371152 - AluY SINE Alu -14 297 1 1559 92 3 176 chr1 28822512 28822696 -253370968 - AluSc SINE Alu -84 215 1 886 137 8 0 chr1 28822698 28822829 -253370835 - FAM SINE Alu -9 40 1 200 250 67 33 chr1 28822839 28822899 -253370765 - L2 LINE L2 -37 3276 3215 857 200 0 0 chr1 28822908 28823053 -253370611 + FRAM SINE Alu 21 165 -11 187 261 34 57 chr1 28823054 28823142 -253370522 - L2 LINE L2 -79 3234 3149 * 607 214 18 127 chr1 28823117 28823314 -253370350 - MIR SINE MIR 0 262 92 2166 88 3 72 chr1 28823314 28823634 -253370030 + AluSq SINE Alu 1 298 -15 607 214 18 127 chr1 28823634 28823665 -253369999 - MIR SINE MIR -170 92 59 254 207 41 58 chr1 28823840 28823961 -253369703 - L1MC/D LINE L1 -1898 5910 5792 326 222 42 0 chr1 28824064 28824136 -253369528 + MIR SINE MIR 80 154 -108 2066 86 10 51 chr1 28824148 28824465 -253369199 + AluY SINE Alu 2 306 0 192 208 94 0 chr1 28824587 28824640 -253369024 - L2 LINE L2 0 3272 3215 301 266 11 43 chr1 28825346 28825426 -253368238 + L3 LINE CR1 869 947 -630 2305 126 0 0 chr1 28825426 28825736 -253367928 + AluSx SINE Alu 2 311 -1 301 266 11 43 chr1 28825736 28825749 -253367915 + L3 LINE CR1 947 959 -618 225 337 0 47 chr1 28826014 28826100 -253367564 - L2 LINE L2 -60 3253 3172 334 332 215 0 chr1 28826143 28826357 -253367307 + L3 LINE CR1 1248 1507 -70 694 259 56 5 chr1 28826393 28826590 -253367074 - MIR SINE MIR -54 208 2 520 338 91 5 chr1 28827223 28827421 -253366243 - MIR SINE MIR -1 261 47 301 208 150 25 chr1 28827699 28827819 -253365845 - MIR SINE MIR -39 223 89 2265 102 0 0 chr1 28827827 28828121 -253365543 - AluSq SINE Alu -3 310 17 233 316 13 25 chr1 28828202 28828281 -253365383 - Charlie4 DNA MER1_type 0 1961 1884 2460 80 3 0 chr1 28828347 28828649 -253365015 - AluSp SINE Alu -10 303 1 545 326 53 5 chr1 28829229 28829419 -253364245 - MIR SINE MIR -56 206 8 221 227 0 0 chr1 28829506 28829550 -253364114 + L2 LINE L2 3225 3268 -4 428 263 64 45 chr1 28830288 28830444 -253363220 + MIR SINE MIR 32 190 -72 2368 84 7 13 chr1 28830454 28830762 -253362902 + AluSx SINE Alu 1 306 -6 220 370 34 34 chr1 28830848 28830994 -253362670 - L2 LINE L2 -93 3179 3034 298 346 63 8 chr1 28831050 28831177 -253362487 - MIR SINE MIR -70 192 59 232 229 49 16 chr1 28831198 28831259 -253362405 - L2 LINE L2 -229 3043 2981 293 295 4 24 chr1 28831681 28831786 -253361878 - MIR3 SINE MIR -40 168 86 325 277 30 0 chr1 28832163 28832264 -253361400 + MIR SINE MIR 79 182 -80 324 298 118 13 chr1 28832301 28832474 -253361190 + MIR SINE MIR 10 198 -62 370 266 133 0 chr1 28833146 28833259 -253360405 - MIR SINE MIR -21 241 114 362 320 45 36 chr1 28833989 28834236 -253359428 + MIR SINE MIR 14 262 0 386 246 18 35 chr1 28834797 28834911 -253358753 - MIR3 SINE MIR -27 181 70 315 319 24 30 chr1 28834944 28835113 -253358551 + L2 LINE L2 2924 3091 -181 969 160 0 18 chr1 28835152 28835321 -253358343 - AluJo/FRAM SINE Alu 0 302 137 1268 128 25 91 chr1 28835321 28835380 -253358284 + AluJo SINE Alu 72 133 -179 2447 76 3 0 chr1 28835380 28835671 -253357993 - AluSp SINE Alu -21 292 1 1268 128 25 91 chr1 28835671 28835854 -253357810 + AluJo SINE Alu 133 298 -14 2096 123 3 3 chr1 28835855 28836148 -253357516 + AluSx SINE Alu 2 294 -18 1986 116 14 14 chr1 28836829 28836942 -253356722 + AluSx SINE Alu 24 136 -176 2483 76 3 0 chr1 28836942 28837243 -253356421 + AluSq SINE Alu 1 302 -11 1986 116 14 14 chr1 28837243 28837414 -253356250 + AluSx SINE Alu 135 308 -4 354 111 0 0 chr1 28837415 28837469 -253356195 - Tigger1 DNA MER2_type -1493 925 872 1989 147 3 10 chr1 28837469 28837762 -253355902 - AluSx SINE Alu -21 291 1 931 144 14 0 chr1 28837762 28837901 -253355763 - AluJo SINE Alu -171 141 1 3266 113 66 92 chr1 28837901 28838277 -253355387 - Tigger1 DNA MER2_type -1765 653 268 2271 92 0 3 chr1 28838277 28838559 -253355105 - AluSg SINE Alu -29 281 1 3266 113 66 92 chr1 28838559 28838808 -253354856 - Tigger1 DNA MER2_type -2150 268 45 1562 201 7 14 chr1 28838808 28838940 -253354724 + AluJo SINE Alu 5 136 -176 2161 119 7 13 chr1 28838940 28839275 -253354389 + AluSp SINE Alu 1 313 0 1562 201 7 14 chr1 28839275 28839431 -253354233 + AluJo SINE Alu 136 291 -21 3266 113 66 92 chr1 28839431 28839474 -253354190 - Tigger1 DNA MER2_type -2373 45 2 27 62 0 0 chr1 28839532 28839580 -253354084 + AT_rich Low_complexity Low_complexity 1 48 0 2945 16 0 0 chr1 28839588 28839901 -253353763 + AluYb8 SINE Alu 1 313 -5 430 250 97 61 chr1 28839907 28840103 -253353561 + MER102a DNA MER1_type 127 329 -1 2568 61 0 0 chr1 28840225 28840522 -253353142 - AluY SINE Alu -14 297 1 2119 91 60 14 chr1 28840525 28840673 -253352991 - AluSx SINE Alu -14 298 158 2648 47 0 10 chr1 28840673 28840974 -253352690 - AluY SINE Alu -13 298 1 2119 91 60 14 chr1 28840974 28841110 -253352554 - AluSx SINE Alu -154 158 1 324 328 45 7 chr1 28841184 28841397 -253352267 - MIR SINE MIR -5 257 39 285 176 129 35 chr1 28841731 28841816 -253351848 - MIR SINE MIR -98 164 72 338 255 92 13 chr1 28841922 28842075 -253351589 + L1MC5 LINE L1 7037 7201 -760 1802 126 73 40 chr1 28842252 28842395 -253351269 + AluJb SINE Alu 1 138 -174 2354 93 0 0 chr1 28842395 28842684 -253350980 + AluSg SINE Alu 1 289 -21 1802 126 73 40 chr1 28842684 28842841 -253350823 + AluJb SINE Alu 138 311 -1 327 272 0 0 chr1 28842857 28842938 -253350726 + L1MC5 LINE L1 7313 7393 -568 2074 118 36 0 chr1 28842944 28843224 -253350440 + AluSx SINE Alu 3 292 -20 2365 88 0 10 chr1 28843306 28843603 -253350061 + AluSg SINE Alu 1 294 -16 589 223 37 32 chr1 28843604 28843792 -253349872 + L1MC5 LINE L1 7388 7576 -385 1961 116 0 4 chr1 28843813 28844080 -253349584 + AluSg SINE Alu 1 266 -44 1325 170 147 8 chr1 28844231 28844496 -253349168 - AluJb SINE Alu 0 302 1 619 246 69 15 chr1 28844932 28845135 -253348529 - L2 LINE L2 -1 3312 3099 423 291 262 12 chr1 28845145 28845488 -253348176 - L2 LINE L2 -370 2944 2516 397 323 77 62 chr1 28845489 28845683 -253347981 + L1MC4a LINE L1 6223 6423 -1385 2511 74 3 0 chr1 28845683 28845981 -253347683 - AluSp SINE Alu -14 299 1 397 323 77 62 chr1 28845981 28846046 -253347618 + L1MC4a LINE L1 6423 6486 -1322 2371 93 23 0 chr1 28846168 28846470 -253347194 - AluSx SINE Alu -3 309 1 230 288 11 109 chr1 28846471 28846655 -253347009 - MIR SINE MIR -1 261 96 198 103 0 0 chr1 28847523 28847552 -253346112 + (TATG)n Simple_repeat Simple_repeat 4 32 0 465 137 0 0 chr1 28847553 28847626 -253346038 - FLAM_A SINE Alu -27 115 43 650 254 26 48 chr1 28847646 28847874 -253345790 + MIR SINE MIR 40 262 0 208 276 61 41 chr1 28848204 28848302 -253345362 + L3b LINE CR1 1294 1393 -190 313 204 80 0 chr1 28848999 28849087 -253344577 - MIR SINE MIR -61 201 107 200 281 35 0 chr1 28849739 28849796 -253343868 + MIR SINE MIR 154 212 -50 467 273 102 32 chr1 28850622 28850809 -253342855 - MIR SINE MIR -29 233 34 739 168 22 0 chr1 28852488 28852625 -253341039 - FLAM_C SINE Alu -3 140 1 284 283 150 17 chr1 28855339 28855459 -253338205 + MIR3 SINE MIR 10 145 -63 189 289 105 0 chr1 28855586 28855662 -253338002 + MIR SINE MIR 35 118 -90 226 184 0 0 chr1 28855733 28855771 -253337893 - MIR SINE MIR -21 241 204 1593 143 121 18 chr1 28855900 28856180 -253337484 - AluSg1 SINE Alu 0 309 1 553 209 20 85 chr1 28856188 28856325 -253337339 - MIR SINE MIR -55 207 86 2037 123 3 43 chr1 28856325 28856625 -253337039 + AluSx SINE Alu 15 302 -10 553 209 20 85 chr1 28856625 28856688 -253336976 - MIR SINE MIR -176 86 20 265 257 274 11 chr1 28857614 28857793 -253335871 + L2 LINE L2 2828 3053 -219 1965 82 0 0 chr1 28857916 28858148 -253335516 + AluSx SINE Alu 56 287 -25 570 114 0 0 chr1 28858148 28858236 -253335428 + (GGGGA)n Simple_repeat Simple_repeat 4 91 0 218 310 0 13 chr1 28859545 28859641 -253334023 - MIR SINE MIR -87 121 50 374 275 144 18 chr1 28859801 28859968 -253333696 - MIR SINE MIR -6 256 69 258 180 0 0 chr1 28859969 28860019 -253333645 - L2 LINE L2 -2 3311 3262 221 250 0 3 chr1 28860030 28860092 -253333572 - MIR SINE MIR -138 70 10 237 227 106 0 chr1 28861146 28861212 -253332452 - MIR3 SINE MIR -24 184 112 358 323 69 8 chr1 28861489 28861619 -253332045 - MIR SINE MIR -112 150 13 468 273 24 67 chr1 28861957 28862122 -253331542 - MIR SINE MIR -76 186 29 907 261 174 9 chr1 28862753 28863190 -253330474 + L1MC4a LINE L1 5669 6177 -1631 2362 81 0 31 chr1 28863197 28863520 -253330144 + AluSq SINE Alu 1 313 0 2385 93 3 0 chr1 28863578 28863879 -253329785 - AluSc SINE Alu -7 302 1 29 0 0 0 chr1 28865103 28865132 -253328532 + AT_rich Low_complexity Low_complexity 1 29 0 268 331 59 7 chr1 28865163 28865299 -253328365 + L2 LINE L2 3003 3145 -127 1558 94 12 94 chr1 28865368 28865505 -253328159 + AluSx SINE Alu 1 148 -164 2391 80 3 7 chr1 28865505 28865806 -253327858 + AluSc SINE Alu 1 300 -9 2260 108 3 3 chr1 28865808 28866105 -253327559 + AluSp SINE Alu 1 297 -16 1558 94 12 94 chr1 28866105 28866218 -253327446 + AluSx SINE Alu 149 233 -79 1972 136 17 11 chr1 28866572 28866859 -253326805 - AluSx SINE Alu -19 293 5 2148 138 3 10 chr1 28867325 28867636 -253326028 - AluSx SINE Alu -3 309 1 1230 102 24 12 chr1 28868097 28868264 -253325400 - AluSx SINE Alu -143 169 1 2246 90 3 27 chr1 28870688 28870988 -253322676 + AluY SINE Alu 17 309 -2 2429 79 0 0 chr1 28871374 28871665 -253321999 + AluY SINE Alu 1 291 -20 261 253 91 0 chr1 28872284 28872383 -253321281 - MIR SINE MIR -109 153 46 884 120 0 0 chr1 28873949 28874066 -253319598 - AluJb SINE Alu -179 133 17 292 167 42 14 chr1 28874080 28874152 -253319512 - MER97c DNA MER1_type? -993 97 24 2435 78 0 3 chr1 28874240 28874536 -253319128 - AluSg SINE Alu -15 295 1 1997 127 52 14 chr1 28874537 28874828 -253318836 - AluSx SINE Alu -10 302 1 293 279 66 44 chr1 28874892 28875028 -253318636 + MIR SINE MIR 53 191 -71 1795 176 33 0 chr1 28875455 28875793 -253317871 - AluJo SINE Alu 0 348 1 663 217 7 14 chr1 28875828 28875971 -253317693 - MLT1B LTR MaLR -43 347 206 907 205 60 0 chr1 28876044 28876244 -253317420 - MLT1A1 LTR MaLR 0 365 154 494 119 239 9 chr1 28876248 28876357 -253317307 - FLAM_C SINE Alu -1 142 9 1162 92 0 0 chr1 28876381 28876545 -253317119 - L1PA7 LINE L1 -2 6152 5989 1736 135 56 0 chr1 28876546 28876850 -253316814 - MER58B DNA MER1_type -10 331 11 456 182 68 0 chr1 28876865 28876953 -253316711 + L2 LINE L2 3209 3302 -11 189 0 0 0 chr1 28877224 28877245 -253316419 + (T)n Simple_repeat Simple_repeat 1 21 0 801 136 0 8 chr1 28878432 28878550 -253315114 + AluJb SINE Alu 1 117 -195 497 79 26 13 chr1 28878550 28878626 -253315038 - AluSc SINE Alu -144 165 89 2653 68 0 0 chr1 28878828 28879138 -253314526 - AluY SINE Alu -1 310 1 468 310 137 15 chr1 28879143 28879340 -253314324 - MIR SINE MIR -8 254 34 * 1057 269 92 14 chr1 28879336 28879533 -253314131 - L2 LINE L2 -5 3308 3128 2272 97 7 7 chr1 28879533 28879833 -253313831 - AluSx SINE Alu -12 300 1 1057 269 92 14 chr1 28879833 28880181 -253313483 - L2 LINE L2 -185 3128 2720 654 298 25 25 chr1 28880309 28880554 -253313110 + MIR SINE MIR 3 247 -15 1951 159 3 0 chr1 28880574 28880870 -253312794 - AluJo SINE Alu -11 301 5 2529 77 3 0 chr1 28881101 28881411 -253312253 + AluY SINE Alu 1 311 0 1193 139 9 79 chr1 28881586 28881802 -253311862 + AluJb SINE Alu 101 301 -11 220 314 114 38 chr1 28881825 28881930 -253311734 + MIR SINE MIR 3 115 -147 * 396 291 186 51 chr1 28881910 28882040 -253311624 - L2 LINE L2 -2 3270 3159 2348 81 10 7 chr1 28882040 28882336 -253311328 + AluSp SINE Alu 1 297 -16 396 291 186 51 chr1 28882336 28882588 -253311076 - L2 LINE L2 -113 3159 2854 355 187 66 0 chr1 28883106 28883197 -253310467 + MER53 DNA DNA 4 100 -89 978 105 0 92 chr1 28883392 28883620 -253310044 + AluSq SINE Alu 14 220 -93 197 282 105 57 chr1 28885803 28885927 -253307737 - MIR3 SINE MIR -12 196 67 250 238 107 48 chr1 28887693 28887777 -253305887 - MIR SINE MIR -124 138 50 235 180 0 40 chr1 28888552 28888602 -253305062 - MLT1L LTR MaLR -153 462 415 403 273 76 0 chr1 28888704 28888836 -253304828 - MLT1L LTR MaLR -337 278 137 1124 28 28 0 chr1 28889013 28889157 -253304507 + L1PA4 LINE L1 6005 6152 -3 481 161 32 11 chr1 28889214 28889307 -253304357 - FLAM_C SINE Alu -18 125 31 419 202 11 0 chr1 28889322 28889411 -253304253 - L1MB7 LINE L1 -43 6141 6052 301 246 0 0 chr1 28889431 28889488 -253304176 + L1MC4 LINE L1 6640 6696 -1346 1989 170 65 28 chr1 28889490 28889539 -253304125 - L1MB8 LINE L1 -121 6057 6011 1795 142 26 42 chr1 28889539 28889849 -253303815 - AluJb SINE Alu -7 305 1 1989 170 65 28 chr1 28889849 28890285 -253303379 - L1MB8 LINE L1 -167 6011 5608 2328 107 3 3 chr1 28890289 28890598 -253303066 - AluSp SINE Alu -4 309 1 2085 117 28 3 chr1 28890598 28890888 -253302776 - AluSq SINE Alu -16 297 1 2211 100 0 20 chr1 28890891 28891190 -253302474 - AluSg SINE Alu -2 308 16 2388 78 13 10 chr1 28891209 28891517 -253302147 - AluSx SINE Alu -3 309 1 238 230 14 14 chr1 28891517 28891591 -253302073 - L1MB8 LINE L1 -808 5366 5293 2172 110 0 10 chr1 28891664 28891963 -253301701 - AluSx SINE Alu -6 306 11 2106 139 7 3 chr1 28891963 28892272 -253301392 - AluSx SINE Alu -2 310 1 687 195 101 13 chr1 28892312 28892471 -253301193 - AluJb SINE Alu -11 301 129 1924 139 0 24 chr1 28892484 28892639 -253301025 - AluSx SINE Alu -25 287 130 2129 93 25 4 chr1 28892639 28892918 -253300746 - AluSx SINE Alu -22 290 6 2206 107 3 3 chr1 28892918 28893209 -253300455 - AluSq SINE Alu -22 291 1 1924 139 0 24 chr1 28893209 28893346 -253300318 - AluSx SINE Alu -180 132 1 1027 199 84 28 chr1 28893347 28893414 -253300250 - L1MB8 LINE L1 -866 5280 5218 1532 186 36 7 chr1 28893414 28893710 -253299954 - AluJb SINE Alu 0 304 1 1027 199 84 28 chr1 28893710 28893962 -253299702 - L1MB8 LINE L1 -928 5218 4942 350 305 75 54 chr1 28894079 28894247 -253299417 + L2 LINE L2 2233 2411 -903 3784 102 20 9 chr1 28894247 28894368 -253299296 - MER41A LTR ERV1 0 554 436 2054 146 10 3 chr1 28894368 28894677 -253298987 + AluSx SINE Alu 1 311 -1 3784 102 20 9 chr1 28894677 28895103 -253298561 - MER41A LTR ERV1 -118 436 1 350 305 75 54 chr1 28895103 28895229 -253298435 + L2 LINE L2 2411 2533 -781 333 263 44 18 chr1 28895234 28895348 -253298316 - L1MC5 LINE L1 -32 7929 7813 2304 71 0 11 chr1 28895444 28895725 -253297939 + AluY SINE Alu 2 279 -32 346 197 0 0 chr1 28895725 28895786 -253297878 - AluJ/FLAM SINE Alu -241 61 1 789 330 162 8 chr1 28895786 28896398 -253297266 + L2 LINE L2 953 1658 -1656 240 158 18 18 chr1 28896445 28896502 -253297162 - AluSp/q SINE Alu 0 303 247 218 236 56 0 chr1 28896517 28896589 -253297075 + T-rich Low_complexity Low_complexity 2 77 0 2542 48 0 3 chr1 28896902 28897192 -253296472 - AluY SINE Alu -22 289 1 668 178 17 106 chr1 28897211 28897330 -253296334 - L1PB4 LINE L1 -18 6138 6039 2390 101 3 0 chr1 28897330 28897638 -253296026 - AluSp SINE Alu 0 313 5 668 178 17 106 chr1 28897638 28897698 -253295966 - L1PB4 LINE L1 -117 6039 5975 418 232 62 0 chr1 28897793 28897905 -253295759 + MER5A DNA MER1_type 26 144 -45 2263 92 6 47 chr1 28897913 28898230 -253295434 + AluSg SINE Alu 1 304 -6 2096 151 0 0 chr1 28898240 28898538 -253295126 + AluJb SINE Alu 1 298 -14 481 218 159 22 chr1 28898599 28898806 -253294858 + MLT1L LTR MaLR 197 458 -97 2059 174 52 48 chr1 28898844 28899149 -253294515 + Tigger7 DNA MER2_type 1 310 -423 2475 76 0 0 chr1 28899149 28899451 -253294213 + AluY SINE Alu 1 302 -9 2059 174 52 48 chr1 28899451 28899583 -253294081 + Tigger7 DNA MER2_type 310 440 -293 2029 120 31 10 chr1 28899584 28899875 -253293789 + AluSg SINE Alu 1 297 -13 298 33 83 0 chr1 28899875 28899935 -253293729 + (TA)n Simple_repeat Simple_repeat 1 65 0 265 198 66 91 chr1 28899941 28900048 -253293616 + Charlie5 DNA MER1_type 2433 2534 -90 2495 82 3 0 chr1 28900048 28900353 -253293311 - AluSp SINE Alu -7 306 1 265 198 66 91 chr1 28900353 28900442 -253293222 + Charlie5 DNA MER1_type 2534 2624 0 463 175 103 10 chr1 28900473 28900570 -253293094 - L2 LINE L2 -16 3297 3192 193 220 17 34 chr1 28900568 28900627 -253293037 - MIR SINE MIR -67 195 138 * 1587 164 51 18 chr1 28900649 28900924 -253292740 - AluJo SINE Alu -28 284 1 32 0 0 0 chr1 28900926 28900958 -253292706 + AT_rich Low_complexity Low_complexity 1 32 0 825 142 0 8 chr1 28900974 28901108 -253292556 + FLAM_C SINE Alu 1 133 0 29 28 0 0 chr1 28901108 28901144 -253292520 + AT_rich Low_complexity Low_complexity 1 36 0 1218 132 82 0 chr1 28901151 28901333 -253292331 - AluJo SINE Alu -30 282 86 531 331 7 0 chr1 28901334 28901476 -253292188 - MIR SINE MIR -110 152 10 381 290 45 19 chr1 28901992 28902147 -253291517 - MIR SINE MIR -80 182 24 2080 122 0 31 chr1 28902322 28902633 -253291031 - AluSx SINE Alu 0 306 5 2130 110 0 0 chr1 28902646 28902919 -253290745 - AluSx SINE Alu -26 286 14 512 252 31 16 chr1 28903061 28903188 -253290476 + MIR SINE MIR 16 144 -64 565 233 16 8 chr1 28903506 28903635 -253290029 - L2 LINE L2 -1 3312 3183 2348 100 3 0 chr1 28903692 28903991 -253289673 + AluSp SINE Alu 1 300 -13 212 300 0 0 chr1 28904268 28904328 -253289336 + L2 LINE L2 2449 2508 -806 * 366 286 8 42 chr1 28904313 28904432 -253289232 - L2 LINE L2 -5 3267 3153 249 291 92 0 chr1 28904439 28904580 -253289084 + L2 LINE L2 2537 2690 -624 390 112 7 17 chr1 28904591 28904673 -253288991 - Alu SINE Alu -1 301 243 1854 254 104 14 chr1 28904799 28905422 -253288242 + HAL1 LINE L1 19 697 -1810 308 158 0 0 chr1 28905425 28905482 -253288182 + HAL1 LINE L1 971 1027 -1480 1245 155 0 0 chr1 28905482 28905669 -253287995 - AluSg/x SINE Alu -5 305 119 2275 89 7 0 chr1 28905729 28906032 -253287632 + AluSg SINE Alu 1 305 0 590 246 24 0 chr1 28906075 28906242 -253287422 + HAL1 LINE L1 1093 1263 -1244 1554 158 15 11 chr1 28906255 28906528 -253287136 + AluJb SINE Alu 1 274 -38 1804 156 3 30 chr1 28906560 28906699 -253286965 + AluJb SINE Alu 1 142 -170 2487 80 0 13 chr1 28906699 28907013 -253286651 + AluY SINE Alu 2 311 0 1804 156 3 30 chr1 28907013 28907175 -253286489 + AluJb SINE Alu 142 294 -18 1604 160 0 16 chr1 28907177 28907427 -253286237 + AluSq SINE Alu 1 246 -67 1067 86 0 0 chr1 28907429 28907568 -253286096 + AluSg/x SINE Alu 172 310 -2 2182 98 7 7 chr1 28907573 28907860 -253285804 + AluSx SINE Alu 9 295 -17 1143 175 130 29 chr1 28907879 28908125 -253285539 - AluJo SINE Alu -12 300 30 400 243 39 0 chr1 28908181 28908284 -253285380 + HAL1 LINE L1 1824 1930 -577 1009 241 67 82 chr1 28908291 28908694 -253284970 + LTR16A LTR ERVL 1 397 -53 2470 74 0 3 chr1 28908749 28909048 -253284616 - AluY SINE Alu -13 298 1 310 206 342 22 chr1 28909048 28909276 -253284388 + HAL1 LINE L1 1941 2241 -266 1335 121 9 40 chr1 28909287 28909510 -253284154 + AluJb SINE Alu 85 300 -12 569 203 0 14 chr1 28909512 28909650 -253284014 + HAL1 LINE L1 2258 2393 -114 920 128 8 8 chr1 28909672 28909805 -253283859 - FLAM_C SINE Alu -10 133 1 227 309 144 10 chr1 28909871 28909968 -253283696 + L2 LINE L2 3193 3302 -11 1469 127 9 5 chr1 28910049 28910262 -253283402 + AluJb SINE Alu 87 300 -12 450 315 24 0 chr1 28910328 28910493 -253283171 + L2 LINE L2 2884 3052 -220 220 278 56 19 chr1 28910559 28910667 -253282997 - L2 LINE L2 -499 2815 2704 1487 91 11 0 chr1 28910842 28911029 -253282635 - AluSg/x SINE Alu -10 302 114 22 35 0 0 chr1 29111211 29111240 -253082424 + AT_rich Low_complexity Low_complexity 1 29 0 318 254 26 26 chr1 29111484 29111598 -253082066 + MIR SINE MIR 24 137 -71 216 0 0 0 chr1 29112211 29112235 -253081429 + (T)n Simple_repeat Simple_repeat 1 24 0 237 279 140 22 chr1 29112897 29113026 -253080638 - MIR3 SINE MIR -10 198 56 474 252 0 9 chr1 29113970 29114077 -253079587 + MIR SINE MIR 9 114 -148 1955 132 20 0 chr1 29114085 29114380 -253079284 - AluSx SINE Alu -9 303 3 283 333 0 11 chr1 29114386 29114479 -253079185 - MIR SINE MIR -101 107 16 206 198 78 27 chr1 29114684 29114763 -253078901 + MIR SINE MIR 83 174 -34 215 204 148 0 chr1 29115156 29115210 -253078454 - L2 LINE L2 -218 3054 2993 2147 117 7 0 chr1 29115215 29115513 -253078151 + AluSx SINE Alu 1 300 -12 200 324 18 100 chr1 29115763 29115933 -253077731 - MIR SINE MIR -5 257 102 541 289 112 46 chr1 29116320 29116765 -253076899 + L2 LINE L2 2593 3077 -236 430 300 209 9 chr1 29116790 29117020 -253076644 - L2 LINE L2 -40 3273 2998 208 333 140 7 chr1 29117070 29117220 -253076444 - L2 LINE L2 -436 2878 2709 285 227 218 0 chr1 29117900 29118010 -253075654 - MIR3 SINE MIR -53 155 22 214 253 107 53 chr1 29118333 29118483 -253075181 - L2 LINE L2 -495 2819 2662 231 292 35 70 chr1 29119239 29119356 -253074308 + MIR SINE MIR 13 129 -97 1196 208 45 5 chr1 29119370 29119671 -253073993 - L1ME3 LINE L1 -178 5984 5675 189 0 0 0 chr1 29119761 29119782 -253073882 + (T)n Simple_repeat Simple_repeat 1 21 0 1841 135 17 14 chr1 29119961 29120249 -253073415 + AluJo SINE Alu 7 295 -17 2019 123 14 3 chr1 29120272 29120564 -253073100 + AluSx SINE Alu 1 295 -17 346 330 175 10 chr1 29120737 29120943 -253072721 + MIR SINE MIR 22 261 -1 503 294 123 18 chr1 29120944 29121114 -253072550 - MIR3 SINE MIR -6 202 15 2233 104 0 0 chr1 29121245 29121542 -253072122 + AluSg SINE Alu 1 297 -13 2124 128 0 6 chr1 29121938 29122251 -253071413 + AluSx SINE Alu 1 311 -1 491 337 29 24 chr1 29122669 29122874 -253070790 - MIR SINE MIR -18 244 39 323 270 11 11 chr1 29122856 29122945 -253070719 - MIR3 SINE MIR -8 200 112 * 324 164 82 0 chr1 29123076 29123149 -253070515 + MER105 DNA DNA 106 184 -20 442 211 35 26 chr1 29123205 29123319 -253070345 + MIR SINE MIR 90 204 -58 279 0 0 0 chr1 29123329 29123360 -253070304 + (TA)n Simple_repeat Simple_repeat 1 31 0 1841 120 0 97 chr1 29123360 29123544 -253070120 - AluSx SINE Alu -3 309 172 2208 104 3 0 chr1 29123544 29123841 -253069823 - AluSc SINE Alu -11 298 1 1841 120 0 97 chr1 29123841 29123998 -253069666 - AluSx SINE Alu -140 172 1 430 277 68 7 chr1 29124503 29124651 -253069013 + MIR SINE MIR 36 192 -70 2134 102 3 16 chr1 29124907 29125221 -253068443 + AluSg SINE Alu 1 310 0 327 189 40 0 chr1 29125237 29125311 -253068353 - MIR SINE MIR -98 110 34 293 266 46 9 chr1 29125371 29125481 -253068183 + MIR SINE MIR 87 200 -56 557 282 17 12 chr1 29125558 29125744 -253067920 + MIR3 SINE MIR 17 201 -7 243 0 0 0 chr1 29126325 29126352 -253067312 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2106 89 3 11 chr1 29126352 29126634 -253067030 - AluSq SINE Alu -33 280 1 1853 143 7 7 chr1 29126634 29126935 -253066729 - AluJb SINE Alu -11 301 1 300 338 52 26 chr1 29126962 29127116 -253066548 - MIR SINE MIR -46 216 59 396 312 136 7 chr1 29127287 29127441 -253066223 - MIR3 SINE MIR -10 198 25 315 297 36 9 chr1 29127786 29127897 -253065767 + MIR SINE MIR 24 137 -71 1865 146 4 4 chr1 29128011 29128292 -253065372 + AluJb SINE Alu 1 281 -31 315 237 76 107 chr1 29128570 29128701 -253064963 - L2 LINE L2 -10 3262 3136 1074 275 167 16 chr1 29128964 29129421 -253064243 - L2 LINE L2 -2 3311 2924 2182 103 7 0 chr1 29129421 29129713 -253063951 + AluSc SINE Alu 1 294 -15 1074 275 167 16 chr1 29129713 29129765 -253063899 - L2 LINE L2 -389 2924 2881 2128 141 0 0 chr1 29129765 29130077 -253063587 + AluSx SINE Alu 1 312 0 1074 275 167 16 chr1 29130077 29130308 -253063356 - L2 LINE L2 -432 2881 2430 1239 72 24 0 chr1 29131403 29131569 -253062095 + AluSg/x SINE Alu 123 292 -20 2235 88 0 38 chr1 29131593 29131912 -253061752 + AluSx SINE Alu 1 307 -5 337 194 71 20 chr1 29131912 29132003 -253061661 + MIR SINE MIR 140 238 -24 295 177 23 200 chr1 29133348 29133430 -253060234 - L2 LINE L2 -192 3080 3028 2059 113 30 3 chr1 29133430 29133732 -253059932 - AluSx SINE Alu -2 310 1 295 177 23 200 chr1 29133732 29133779 -253059885 - L2 LINE L2 -244 3028 2974 241 353 39 39 chr1 29134105 29134258 -253059406 - MIR3 SINE MIR -49 159 7 459 292 39 15 chr1 29134600 29134730 -253058934 + MIR3 SINE MIR 30 162 -46 1739 139 3 11 chr1 29134819 29135106 -253058558 - AluSq SINE Alu -14 299 15 1853 129 44 0 chr1 29135312 29135620 -253058044 + AluSq SINE Alu 1 320 0 632 115 0 0 chr1 29135656 29135743 -253057921 - AluSc SINE Alu -19 290 204 882 211 70 11 chr1 29135964 29136149 -253057515 + MIR SINE MIR 1 196 -66 396 0 0 0 chr1 29136651 29136695 -253056969 + (TG)n Simple_repeat Simple_repeat 2 45 0 326 297 68 0 chr1 29136916 29137034 -253056630 + MIR3 SINE MIR 76 201 -7 514 289 54 0 chr1 29137961 29138110 -253055554 + MIR SINE MIR 87 243 -19 2054 101 0 79 chr1 29139342 29139660 -253054004 - AluSx SINE Alu -19 293 1 183 365 173 0 chr1 29139859 29139963 -253053701 - L2 LINE L2 -10 3303 3182 998 185 50 5 chr1 29140006 29140206 -253053458 - AluJo SINE Alu -103 209 1 546 227 23 8 chr1 29140594 29140722 -253052942 + MIR3 SINE MIR 30 159 -49 390 239 181 7 chr1 29140915 29141053 -253052611 - L3 LINE CR1 -78 1499 1338 296 308 58 10 chr1 29141215 29141319 -253052345 - MIR SINE MIR -50 212 104 558 302 112 19 chr1 29142029 29142244 -253051420 - MIR SINE MIR -23 239 5 1727 167 14 3 chr1 29142268 29142561 -253051103 - AluJo SINE Alu -16 296 1 300 173 80 10 chr1 29142578 29142682 -253050982 + MIR SINE MIR 84 202 -6 259 234 36 99 chr1 29142777 29142832 -253050832 + MIR SINE MIR 69 115 -147 2355 88 0 3 chr1 29142832 29143137 -253050527 - AluSx SINE Alu -8 304 1 259 234 36 99 chr1 29143137 29143192 -253050472 + MIR SINE MIR 115 172 -90 203 291 148 30 chr1 29143664 29143836 -253049828 + MIR SINE MIR 11 197 -51 530 308 133 13 chr1 29144025 29144077 -253049587 - MIR SINE MIR 0 262 218 1405 170 73 35 chr1 29144077 29144245 -253049419 - AluJo SINE Alu -12 300 115 252 0 0 0 chr1 29144245 29144273 -253049391 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1405 170 73 35 chr1 29144273 29144393 -253049271 - AluJo SINE Alu -197 115 1 530 308 133 13 chr1 29144393 29144574 -253049090 - MIR SINE MIR -44 218 1 206 369 46 3 chr1 29145166 29145346 -253048318 + MIR SINE MIR 34 225 -37 286 266 113 8 chr1 29145439 29145563 -253048101 - MER5B DNA MER1_type -7 171 35 249 326 57 21 chr1 29145545 29145686 -253047978 - MIR3 SINE MIR -11 197 52 * 736 272 77 0 chr1 29145693 29145888 -253047776 - MIR SINE MIR -24 238 29 197 391 23 8 chr1 29147098 29147226 -253046438 + MIR SINE MIR 2 131 -131 1650 163 43 0 chr1 29147226 29147508 -253046156 - AluSq SINE Alu -19 294 1 213 341 8 32 chr1 29148141 29148264 -253045400 - MER5A DNA MER1_type -5 184 65 420 218 70 21 chr1 29148264 29148406 -253045258 - L1MC5 LINE L1 -30 7931 7783 598 149 0 0 chr1 29148953 29149047 -253044617 + MIR SINE MIR 52 145 -63 2201 105 10 3 chr1 29149150 29149455 -253044209 + AluSq SINE Alu 1 307 -6 388 284 59 0 chr1 29149463 29149565 -253044099 + MIR SINE MIR 38 145 -63 506 340 31 11 chr1 29149575 29149766 -253043898 + MIR3 SINE MIR 5 199 -9 202 253 53 53 chr1 29149832 29149927 -253043737 + MIR SINE MIR 39 133 -129 1528 174 10 27 chr1 29150061 29150359 -253043305 + AluJb SINE Alu 3 295 -17 2510 68 0 0 chr1 29150366 29150673 -253042991 + AluSx SINE Alu 1 307 -5 678 276 48 24 chr1 29150810 29151020 -253042644 + MIR SINE MIR 31 245 -17 191 349 0 0 chr1 29151108 29151171 -253042493 - MIR SINE MIR -160 102 40 1132 137 149 38 chr1 29156712 29156805 -253036859 + MER46B DNA MER2_type 69 150 -2581 2269 98 0 0 chr1 29156805 29157100 -253036564 + AluSx SINE Alu 1 295 -17 1132 137 149 38 chr1 29157100 29157268 -253036396 + MER46B DNA MER2_type 150 234 -2 442 219 10 0 chr1 29157537 29157633 -253036031 + MER2 DNA MER2_type 1 97 -248 419 135 504 0 chr1 29157644 29157784 -253035880 - MER2 DNA MER2_type -16 329 119 296 150 17 17 chr1 29157784 29157844 -253035820 + AluJ/FLAM SINE Alu 1 60 -242 825 179 0 0 chr1 29158487 29158638 -253035026 + L1MB5 LINE L1 6012 6162 -12 1929 90 0 55 chr1 29158732 29159043 -253034621 - AluY SINE Alu -17 294 1 834 342 29 45 chr1 29159086 29159514 -253034150 - ERVL LTR ERVL -313 5341 4962 2282 120 0 3 chr1 29159514 29159823 -253033841 - AluSx SINE Alu -4 308 1 834 342 29 45 chr1 29159823 29160125 -253033539 - ERVL LTR ERVL -692 4962 4657 2247 120 13 0 chr1 29160185 29160493 -253033171 + AluSx SINE Alu 1 312 0 315 122 0 0 chr1 29160493 29160542 -253033122 + (GGGAA)n Simple_repeat Simple_repeat 2 50 0 1760 159 134 20 chr1 29160612 29161053 -253032611 - Charlie1b DNA MER1_type -1 522 32 2519 321 57 51 chr1 29161054 29161163 -253032501 - ERVL LTR ERVL -1456 4308 4201 1114 181 112 120 chr1 29161163 29161444 -253032220 - MLT1D LTR MaLR 0 505 223 2436 82 3 0 chr1 29161444 29161738 -253031926 + AluSp SINE Alu 1 295 -18 1114 181 112 120 chr1 29161738 29161804 -253031860 - MLT1D LTR MaLR -282 223 158 1786 145 10 37 chr1 29161804 29162100 -253031564 - AluJo SINE Alu -24 288 1 1114 181 112 120 chr1 29162100 29162171 -253031493 - MLT1D LTR MaLR -347 158 88 2094 138 0 7 chr1 29162171 29162468 -253031196 + AluSx SINE Alu 1 295 -17 1114 181 112 120 chr1 29162468 29162556 -253031108 - MLT1D LTR MaLR -417 88 1 2519 321 57 51 chr1 29162556 29163423 -253030241 - ERVL LTR ERVL -1563 4201 3340 2308 108 7 0 chr1 29163423 29163719 -253029945 - AluSx SINE Alu -14 298 1 2577 61 0 0 chr1 29163727 29164024 -253029640 - AluY SINE Alu -14 297 1 2519 321 57 51 chr1 29164024 29164849 -253028815 - ERVL LTR ERVL -2430 3334 2487 536 278 35 23 chr1 29165036 29165209 -253028455 - ERVL LTR ERVL -2716 3048 2874 972 98 0 0 chr1 29165501 29165634 -253028030 - FLAM_C SINE Alu 0 133 1 471 354 30 13 chr1 29165650 29165887 -253027777 - ERVL LTR ERVL -4709 1055 815 254 406 51 0 chr1 29165980 29166177 -253027487 - ERVL LTR ERVL -5129 635 429 649 185 130 5 chr1 29166548 29166748 -253026916 - LTR33 LTR ERVL 0 521 297 273 226 24 36 chr1 29166754 29166838 -253026826 - LTR33 LTR ERVL -437 84 2 2094 100 43 4 chr1 29166861 29167140 -253026524 + AluSx SINE Alu 1 290 -22 553 97 67 0 chr1 29167191 29167356 -253026308 + (TG)n Simple_repeat Simple_repeat 1 176 0 266 65 65 26 chr1 29167370 29167447 -253026217 + (TG)n Simple_repeat Simple_repeat 1 80 0 449 91 75 22 chr1 29167489 29167812 -253025852 + (TG)n Simple_repeat Simple_repeat 1 340 0 241 200 0 0 chr1 29168391 29168441 -253025223 - L2 LINE L2 0 3313 3264 1565 115 0 5 chr1 29168458 29168667 -253024997 + AluSx SINE Alu 1 208 -104 896 107 20 53 chr1 29168667 29168817 -253024847 + AluSg/x SINE Alu 165 309 0 267 159 0 0 chr1 29168829 29168873 -253024791 - L2 LINE L2 -83 3230 3187 214 233 27 41 chr1 29168900 29168973 -253024691 + L2 LINE L2 2991 3062 -251 205 281 94 16 chr1 29170254 29170318 -253023346 + MIR SINE MIR 20 88 -174 1102 158 0 6 chr1 29170361 29170532 -253023132 + AluJb SINE Alu 134 303 -9 2145 105 3 56 chr1 29170585 29170720 -253022944 + AluSx SINE Alu 1 142 -170 2297 94 16 3 chr1 29170720 29170842 -253022822 + AluSq SINE Alu 1 120 -193 255 31 0 0 chr1 29170842 29170874 -253022790 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 2297 94 16 3 chr1 29170874 29171060 -253022604 + AluSq SINE Alu 120 313 0 2145 105 3 56 chr1 29171060 29171248 -253022416 + AluSx SINE Alu 142 307 -5 611 188 0 76 chr1 29171254 29171398 -253022266 + FLAM_A SINE Alu 1 133 0 2124 128 7 3 chr1 29171446 29171751 -253021913 + AluSp SINE Alu 1 306 -7 367 260 31 10 chr1 29171753 29171849 -253021815 - MIR SINE MIR -86 122 25 301 331 89 0 chr1 29173093 29173217 -253020447 + MIR SINE MIR 105 239 -23 311 254 8 100 chr1 29173436 29173566 -253020098 - MIR3 SINE MIR -53 155 38 283 246 100 5 chr1 29174426 29174523 -253019141 - MIR SINE MIR -77 131 33 303 230 93 79 chr1 29175015 29175113 -253018551 - MIR SINE MIR -12 250 148 2410 86 0 10 chr1 29175113 29175426 -253018238 - AluSq SINE Alu -3 310 1 303 230 93 79 chr1 29175426 29175466 -253018198 - MIR SINE MIR -114 148 110 311 258 58 58 chr1 29175641 29175761 -253017903 - MIR3 SINE MIR -22 186 67 2153 151 131 96 chr1 29177310 29177810 -253015854 + MLT1E1 LTR MaLR 64 545 -109 252 0 0 0 chr1 29177810 29177838 -253015826 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2245 98 7 0 chr1 29177840 29178117 -253015547 - AluSx SINE Alu -32 280 2 2153 151 131 96 chr1 29178117 29178184 -253015480 + MLT1E1 LTR MaLR 545 654 0 275 342 108 56 chr1 29178245 29178336 -253015328 - L2 LINE L2 -1638 1676 1591 1639 159 39 39 chr1 29178336 29178644 -253015020 + AluJo SINE Alu 1 308 -4 275 342 108 56 chr1 29178644 29179247 -253014417 - L2 LINE L2 -1723 1591 946 847 262 129 36 chr1 29179283 29179749 -253013915 - MLT1J LTR MaLR -2 509 1 317 278 20 66 chr1 29179798 29179949 -253013715 - L1ME LINE L1 -344 5777 5634 475 353 43 30 chr1 29180106 29180435 -253013229 + L1MEd LINE L1 337 669 -5450 2495 70 3 0 chr1 29180481 29180780 -253012884 + AluSp SINE Alu 1 300 -13 2210 113 0 0 chr1 29180796 29181089 -253012575 + AluSg SINE Alu 1 293 -17 1624 238 36 91 chr1 29181172 29181305 -253012359 + L1ME3A LINE L1 5176 5315 -855 2288 99 0 7 chr1 29181305 29181608 -253012056 + AluSg SINE Alu 3 303 -7 1624 238 36 91 chr1 29181608 29181636 -253012028 + L1ME3A LINE L1 5315 5343 -827 1800 165 0 17 chr1 29181636 29181933 -253011731 + AluJb SINE Alu 18 309 -3 1624 238 36 91 chr1 29181933 29182352 -253011312 + L1ME3A LINE L1 5343 5783 -387 1799 133 36 14 chr1 29182352 29182630 -253011034 + AluJb SINE Alu 29 312 0 387 0 0 0 chr1 29182636 29182679 -253010985 + (TA)n Simple_repeat Simple_repeat 1 43 0 1624 238 36 91 chr1 29182679 29183123 -253010541 + L1ME3A LINE L1 5788 6155 -15 350 223 0 86 chr1 29183143 29183198 -253010466 + L1M4 LINE L1 3342 3400 -2746 2386 97 3 0 chr1 29183198 29183496 -253010168 + AluSq SINE Alu 1 299 -14 350 223 0 86 chr1 29183496 29183579 -253010085 + L1M4 LINE L1 3400 3468 -2678 1345 216 101 61 chr1 29183585 29183652 -253010012 - MLT1E LTR MaLR 0 593 530 2411 99 0 0 chr1 29183652 29183955 -253009709 + AluY SINE Alu 1 303 -8 1345 216 101 61 chr1 29183955 29184262 -253009402 - MLT1E LTR MaLR -63 530 204 254 114 0 0 chr1 29184268 29184303 -253009361 + AluJo/FLAM SINE Alu 87 121 -181 2085 71 11 14 chr1 29184305 29184586 -253009078 - AluY SINE Alu -18 293 14 1854 111 4 0 chr1 29184689 29184933 -253008731 + AluSq SINE Alu 47 291 -22 2248 108 3 13 chr1 29185011 29185326 -253008338 + AluSx SINE Alu 1 312 0 292 244 50 76 chr1 29185533 29185555 -253008109 + L2 LINE L2 2690 2711 -603 1961 155 30 0 chr1 29185555 29185851 -253007813 + AluJo SINE Alu 1 305 -7 292 244 50 76 chr1 29185851 29185947 -253007717 + L2 LINE L2 2711 2805 -509 687 238 60 16 chr1 29185979 29186164 -253007500 + MIR SINE MIR 70 262 0 1439 59 0 6 chr1 29186426 29186595 -253007069 + AluY SINE Alu 1 168 -143 1896 192 71 21 chr1 29186595 29187032 -253006632 - LTR2B LTR ERV1 0 490 32 1099 70 14 0 chr1 29187051 29187193 -253006471 + AluY SINE Alu 165 308 -3 183 240 40 0 chr1 29187276 29187326 -253006338 - MER5A DNA MER1_type -2 187 136 2602 74 0 0 chr1 29187339 29187648 -253006016 + AluSx SINE Alu 1 309 -3 1082 73 0 0 chr1 29188551 29188688 -253004976 + AluSg/x SINE Alu 175 311 -1 507 258 149 9 chr1 29189614 29189835 -253003829 + MLT1L LTR MaLR 39 290 -325 738 303 29 21 chr1 29189904 29190145 -253003519 + MIR SINE MIR 20 262 0 337 172 0 0 chr1 29190147 29190205 -253003459 + MLT1L LTR MaLR 335 392 -223 1132 137 11 39 chr1 29190273 29190455 -253003209 - AluJb SINE Alu -5 307 131 2467 86 0 3 chr1 29190474 29190778 -253002886 + AluSg SINE Alu 1 303 -7 549 260 10 73 chr1 29191017 29191124 -253002540 + MLT1J LTR MaLR 10 101 -410 2275 101 0 22 chr1 29191124 29191441 -253002223 + AluSx SINE Alu 1 310 -2 549 260 10 73 chr1 29191441 29191525 -253002139 + MLT1J LTR MaLR 101 189 -322 2005 147 0 33 chr1 29191565 29191725 -253001939 - AluJb SINE Alu -16 296 132 243 0 0 0 chr1 29191725 29191752 -253001912 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 2264 90 0 0 chr1 29191752 29192031 -253001633 - AluSg1 SINE Alu -30 279 1 2005 147 0 33 chr1 29192031 29192175 -253001489 - AluJb SINE Alu -178 134 1 234 171 110 24 chr1 29192232 29192314 -253001350 + MLT1J LTR MaLR 403 491 -20 660 258 148 32 chr1 29192390 29192828 -253000836 - MLT1H LTR MaLR 0 549 19 183 184 0 0 chr1 29193075 29193113 -253000551 + A-rich Low_complexity Low_complexity 5 42 0 264 320 0 0 chr1 29193339 29193414 -253000250 - MER5A DNA MER1_type -6 183 109 1185 102 57 23 chr1 29193416 29193574 -253000090 - AluSg/x SINE Alu -11 301 135 2153 136 0 3 chr1 29193574 29193884 -252999780 - AluJb SINE Alu -3 309 1 1185 102 57 23 chr1 29193884 29193901 -252999763 - AluSg/x SINE Alu -177 135 120 2595 68 3 0 chr1 29194031 29194342 -252999322 - AluSq SINE Alu -1 312 1 239 186 14 43 chr1 29194571 29194641 -252999023 + MLT1K LTR MaLR 182 249 -339 2005 86 13 70 chr1 29194830 29195144 -252998520 - AluSx SINE Alu -16 296 1 995 31 78 0 chr1 29195542 29195671 -252997993 - MER85 DNA T2_type 0 139 1 2318 186 19 77 chr1 29195753 29196133 -252997531 + MLT1F LTR MaLR 1 401 -141 2291 102 7 0 chr1 29196133 29196426 -252997238 - AluSx SINE Alu -17 295 1 2318 186 19 77 chr1 29196426 29196551 -252997113 + MLT1F LTR MaLR 401 472 -70 2259 96 0 14 chr1 29196551 29196881 -252996783 - AluSp SINE Alu 0 313 1 2318 186 19 77 chr1 29196881 29196945 -252996719 + MLT1F LTR MaLR 472 538 -4 3951 97 97 3 chr1 29197238 29197827 -252995837 + LTR9B LTR ERV1 1 644 0 265 159 0 0 chr1 29198110 29198154 -252995510 + MSTC LTR MaLR 1 44 -384 363 322 0 0 chr1 29198184 29198274 -252995390 + L1MC4 LINE L1 6614 6703 -1339 2657 55 0 3 chr1 29198277 29198586 -252995078 - AluY SINE Alu -3 308 1 1850 168 0 10 chr1 29198587 29198884 -252994780 - AluJb SINE Alu -18 294 1 2311 154 15 5 chr1 29198885 29199274 -252994390 + MSTC LTR MaLR 36 428 0 2141 109 0 0 chr1 29200212 29200487 -252993177 + AluSx SINE Alu 3 277 -35 2316 106 0 0 chr1 29201536 29201829 -252991835 + AluSx SINE Alu 1 293 -19 851 120 0 0 chr1 29202241 29202374 -252991290 + FLAM_C SINE Alu 1 133 0 257 180 0 16 chr1 29202379 29202440 -252991224 + GA-rich Low_complexity Low_complexity 2 61 0 271 237 9 105 chr1 29202842 29202956 -252990708 + LTR37A LTR ERV1 83 185 -241 546 184 14 18 chr1 29202958 29203109 -252990555 + LTR37A LTR ERV1 289 420 -6 259 236 0 0 chr1 29203405 29203460 -252990204 + MIR SINE MIR 95 149 -113 608 198 15 99 chr1 29204072 29204194 -252989470 - MIR SINE MIR -12 250 119 2260 96 3 0 chr1 29204194 29204485 -252989179 + AluSx SINE Alu 1 292 -20 2174 119 3 3 chr1 29204486 29204781 -252988883 + AluSq SINE Alu 3 297 -16 608 198 15 99 chr1 29204781 29204858 -252988806 - MIR SINE MIR -142 120 66 2168 108 7 29 chr1 29204962 29205289 -252988375 + AluSq SINE Alu 1 313 0 265 132 0 0 chr1 29205289 29205327 -252988337 + AluSq SINE Alu 134 171 -132 538 301 74 9 chr1 29205356 29205572 -252988092 + L2 LINE L2 3082 3311 -2 22 0 0 0 chr1 29205993 29206015 -252987649 + AT_rich Low_complexity Low_complexity 1 22 0 2218 113 3 7 chr1 29206049 29206359 -252987305 - AluSq SINE Alu -4 309 1 205 208 125 0 chr1 29206653 29206701 -252986963 - MIR SINE MIR -65 143 90 2244 117 7 0 chr1 29206750 29207050 -252986614 + AluSx SINE Alu 2 303 -9 465 318 60 0 chr1 29207143 29207294 -252986370 + MIR SINE MIR 47 206 -56 356 315 0 39 chr1 29207525 29207655 -252986009 - L2 LINE L2 -1 3271 3147 2497 80 0 0 chr1 29207693 29207995 -252985669 + AluY SINE Alu 2 303 -8 414 227 73 9 chr1 29208008 29208118 -252985546 - LTR16A LTR ERVL -188 262 146 184 207 121 86 chr1 29208118 29208234 -252985430 - L2 LINE L2 -271 3042 2923 276 347 116 15 chr1 29208295 29208494 -252985170 - L2 LINE L2 -541 2773 2555 483 283 0 0 chr1 29208701 29208814 -252984850 - LTR16A LTR ERVL -148 302 190 183 235 0 0 chr1 29208935 29208969 -252984695 + MIR SINE MIR 221 254 -8 262 240 21 13 chr1 29209307 29209417 -252984247 - LTR33A LTR ERVL -9 535 433 411 115 16 0 chr1 29209765 29209826 -252983838 - AluS SINE Alu -246 63 2 989 122 39 6 chr1 29209843 29209999 -252983665 + FRAM SINE Alu 1 156 -20 665 185 28 139 chr1 29210011 29210117 -252983547 - MLT1E LTR MaLR -398 195 79 2210 93 7 3 chr1 29210117 29210419 -252983245 + AluSq SINE Alu 2 304 -9 2480 71 3 0 chr1 29210420 29210731 -252982933 + AluSp SINE Alu 1 312 -1 665 185 28 139 chr1 29210731 29210838 -252982826 - MLT1E LTR MaLR -513 80 4 284 277 0 0 chr1 29211001 29211066 -252982598 - L1ME LINE L1 -521 5600 5536 299 255 7 72 chr1 29211090 29211243 -252982421 - L1MC4 LINE L1 -5 8037 7895 275 121 241 0 chr1 29211252 29211310 -252982354 - L1ME2 LINE L1 -206 5958 5887 1252 102 0 6 chr1 29211312 29211489 -252982175 - AluSg/x SINE Alu 0 312 137 1159 211 71 20 chr1 29211490 29211784 -252981880 - L1ME2 LINE L1 -275 5889 5581 541 221 0 0 chr1 29211784 29211888 -252981776 + FLAM_C SINE Alu 39 142 -1 275 211 9 37 chr1 29211905 29212014 -252981650 + GA-rich Low_complexity Low_complexity 3 108 0 1037 229 21 21 chr1 29212022 29212302 -252981362 - L1ME2 LINE L1 -617 5547 5268 1096 161 37 155 chr1 29212305 29212659 -252981005 + AluYb8 SINE Alu 1 312 -6 2297 92 0 3 chr1 29212730 29213033 -252980631 - AluSx SINE Alu -10 302 1 1606 100 9 0 chr1 29213170 29213399 -252980265 + AluSg/x SINE Alu 82 312 0 370 183 37 0 chr1 29213401 29213483 -252980181 - L1ME2 LINE L1 -1053 5093 5009 287 269 29 39 chr1 29213483 29213507 -252980157 - MIR SINE MIR -78 184 161 2040 100 17 0 chr1 29213507 29213796 -252979868 + AluSx SINE Alu 1 294 -18 287 269 29 39 chr1 29213796 29213875 -252979789 - MIR SINE MIR -101 161 82 395 296 155 54 chr1 29214308 29214676 -252978988 - MERVL LTR ERVL -462 5302 4898 388 283 102 97 chr1 29214679 29214744 -252978920 - MERVL LTR ERVL -878 4776 4713 1729 164 11 3 chr1 29214744 29215031 -252978633 - AluJo SINE Alu -23 289 1 388 283 102 97 chr1 29215031 29215222 -252978442 - MERVL LTR ERVL -941 4713 4524 2175 125 0 0 chr1 29215222 29215526 -252978138 - AluSx SINE Alu -8 304 1 388 283 102 97 chr1 29215526 29215872 -252977792 - MERVL LTR ERVL -1130 4524 4168 446 215 0 6 chr1 29215883 29216060 -252977604 + (CCTG)n Simple_repeat Simple_repeat 3 178 0 378 239 0 0 chr1 29216076 29216252 -252977412 + (CCTG)n Simple_repeat Simple_repeat 3 178 0 2234 101 7 0 chr1 29216765 29217073 -252976591 - AluSx SINE Alu -1 311 2 376 324 45 28 chr1 29217213 29217460 -252976204 - MERVL LTR ERVL -1684 4080 3830 565 302 88 47 chr1 29218202 29218520 -252975144 - MERVL LTR ERVL -2156 3498 3168 339 282 10 115 chr1 29218828 29218958 -252974706 - MER5A DNA MER1_type -2 187 45 1762 140 29 52 chr1 29218958 29219138 -252974526 - AluJo SINE Alu -2 300 128 2024 107 10 20 chr1 29219138 29219272 -252974392 + AluSx SINE Alu 1 135 -177 2235 110 0 0 chr1 29219272 29219581 -252974083 + AluSg1 SINE Alu 1 309 0 2024 107 10 20 chr1 29219581 29219746 -252973918 + AluSx SINE Alu 135 297 -15 1762 140 29 52 chr1 29219746 29219872 -252973792 - AluJo SINE Alu -174 128 1 339 282 10 115 chr1 29219872 29219950 -252973714 - MER5A DNA MER1_type -144 45 1 1368 268 48 20 chr1 29220003 29220398 -252973266 - MLT1J LTR MaLR -1 510 105 21 57 0 0 chr1 29220550 29220585 -252973079 + AT_rich Low_complexity Low_complexity 1 35 0 1933 122 20 7 chr1 29220619 29220922 -252972742 + AluSx SINE Alu 6 312 0 338 0 24 0 chr1 29220954 29220996 -252972668 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 526 307 40 0 chr1 29221147 29221323 -252972341 - MIR SINE MIR -71 191 9 2095 122 0 0 chr1 29221354 29221650 -252972014 - AluY SINE Alu -14 297 2 220 297 182 0 chr1 29221853 29222001 -252971663 - L2 LINE L2 -829 2485 2311 2320 94 3 0 chr1 29222313 29222621 -252971043 - AluSx SINE Alu -3 309 1 595 265 213 9 chr1 29222668 29222879 -252970785 + MIR SINE MIR 6 259 -3 1602 157 14 31 chr1 29223079 29223373 -252970291 + AluJo SINE Alu 11 299 -13 606 245 44 13 chr1 29223373 29223532 -252970132 - MIR SINE MIR -79 183 20 2334 90 3 0 chr1 29223574 29223885 -252969779 + AluSp SINE Alu 1 312 -1 314 299 17 26 chr1 29224345 29224462 -252969202 - MIR SINE MIR -55 153 38 394 273 9 18 chr1 29224472 29224582 -252969082 + MIR SINE MIR 34 142 -120 477 0 0 0 chr1 29224648 29224701 -252968963 + (CA)n Simple_repeat Simple_repeat 2 54 0 212 295 89 18 chr1 29224943 29225055 -252968609 + L2 LINE L2 3153 3272 0 421 285 8 16 chr1 29225133 29225256 -252968408 + MIR SINE MIR 19 140 -68 * 673 232 378 0 chr1 29225254 29225446 -252968218 - L2 LINE L2 -264 3049 2931 2055 127 3 0 chr1 29225446 29225745 -252967919 - AluSg SINE Alu -10 300 1 673 232 378 0 chr1 29225745 29225974 -252967690 - L2 LINE L2 -382 2931 2462 501 268 106 11 chr1 29225981 29226350 -252967314 - MLT1H LTR MaLR 0 549 108 200 136 0 45 chr1 29226580 29226624 -252967040 + (GGGTG)n Simple_repeat Simple_repeat 3 44 0 215 295 155 16 chr1 29226658 29226787 -252966877 - L2 LINE L2 -24 3248 3102 250 281 0 0 chr1 29226992 29227056 -252966608 - MIR SINE MIR -112 150 87 2018 118 13 7 chr1 29228374 29228680 -252964984 + AluSx SINE Alu 1 308 -4 1187 113 0 32 chr1 29228682 29228868 -252964796 + AluSg/x SINE Alu 127 306 -6 312 286 20 41 chr1 29229503 29229601 -252964063 - L1MC4 LINE L1 -1339 6703 6608 2121 64 0 0 chr1 29229614 29229878 -252963786 + AluY SINE Alu 4 267 -44 1767 135 10 7 chr1 29230030 29230319 -252963345 - AluSc SINE Alu -14 295 6 2141 116 0 3 chr1 29230325 29230627 -252963037 - AluSx SINE Alu -11 301 1 765 221 159 0 chr1 29230939 29231165 -252962499 + L2 LINE L2 2100 2361 -953 2147 90 13 7 chr1 29231316 29231615 -252962049 - AluSq SINE Alu -12 301 1 246 62 0 0 chr1 29231624 29231656 -252962008 + (GAAA)n Simple_repeat Simple_repeat 2 33 0 2269 88 0 0 chr1 29231664 29231961 -252961703 + AluSx SINE Alu 1 297 -15 271 262 166 28 chr1 29231961 29232097 -252961567 - MER112 DNA MER1_type -90 170 12 2229 121 95 67 chr1 29232252 29232598 -252961066 + LTR47A LTR ERVL 1 364 -88 1931 87 0 4 chr1 29232598 29232947 -252960717 - AluSq SINE Alu 0 379 32 2229 121 95 67 chr1 29232947 29233029 -252960635 + LTR47A LTR ERVL 364 442 -10 231 358 46 0 chr1 29233235 29233344 -252960320 + L2 LINE L2 2898 3011 -302 662 269 35 15 chr1 29233344 29233541 -252960123 - MLT1K LTR MaLR -69 519 319 1446 118 0 0 chr1 29233563 29233767 -252959897 + AluSg1 SINE Alu 1 204 -105 424 300 0 52 chr1 29233792 29233921 -252959743 - MLT1K LTR MaLR -289 299 165 2299 74 24 0 chr1 29233921 29234219 -252959445 + AluSp SINE Alu 1 305 -8 424 300 0 52 chr1 29234219 29234334 -252959330 - MLT1K LTR MaLR -423 165 2 495 307 89 6 chr1 29234401 29234580 -252959084 + L2 LINE L2 3119 3312 -1 875 187 6 16 chr1 29234624 29234806 -252958858 - AluJb SINE Alu -1 311 132 1847 93 108 4 chr1 29234827 29235096 -252958568 + AluSx SINE Alu 1 297 -15 1960 133 14 0 chr1 29235103 29235397 -252958267 + AluSx SINE Alu 1 298 -14 2433 56 0 3 chr1 29235840 29236142 -252957522 - AluY SINE Alu -10 301 1 803 149 8 0 chr1 29236353 29236474 -252957190 - FLAM_C SINE Alu -19 124 3 972 278 141 29 chr1 29236474 29237148 -252956516 + L2 LINE L2 2345 3093 -220 443 233 101 57 chr1 29237160 29237319 -252956345 + MIR SINE MIR 28 193 -69 2210 40 44 0 chr1 29237343 29237683 -252955981 + AluY SINE Alu 1 352 0 814 110 34 0 chr1 29237720 29237838 -252955826 - AluJo SINE Alu -21 291 170 870 186 41 52 chr1 29237941 29238135 -252955529 - AluJo SINE Alu -119 193 2 1037 164 19 0 chr1 29238154 29238313 -252955351 - FRAM SINE Alu -4 162 1 453 256 8 41 chr1 29238386 29238507 -252955157 + L2 LINE L2 3196 3312 -1 2159 80 19 32 chr1 29238615 29238928 -252954736 + AluSx SINE Alu 1 309 -3 1721 162 3 7 chr1 29239862 29240152 -252953512 - AluJb SINE Alu -23 289 1 309 258 226 0 chr1 29240160 29240253 -252953411 - MIR SINE MIR -62 146 33 2111 116 0 19 chr1 29240259 29240569 -252953095 - AluSg SINE Alu -4 306 3 206 292 11 56 chr1 29240981 29241070 -252952594 - MIR3 SINE MIR -24 184 100 222 324 49 20 chr1 29241244 29241346 -252952318 + L2 LINE L2 3140 3244 -28 182 366 151 0 chr1 29243647 29243740 -252949924 - MIR3 SINE MIR -21 187 81 2116 63 53 3 chr1 29243797 29244081 -252949583 + AluY SINE Alu 1 298 -13 227 239 34 45 chr1 29244081 29244169 -252949495 + MER34 LTR ERV1 427 513 -29 596 246 0 0 chr1 29244206 29244320 -252949344 - MIR SINE MIR -141 121 8 827 188 0 0 chr1 29244343 29244497 -252949167 + FRAM SINE Alu 1 153 -23 1172 146 13 53 chr1 29244512 29244738 -252948926 + AluSg SINE Alu 49 265 -45 1251 92 6 0 chr1 29244827 29244991 -252948673 - AluSp SINE Alu -148 165 1 272 150 0 0 chr1 29244991 29245031 -252948633 - Alu SINE Alu -263 40 1 765 181 25 12 chr1 29245327 29245487 -252948177 + MER5A DNA MER1_type 10 171 -18 1361 176 112 7 chr1 29245563 29245841 -252947823 - AluJb SINE Alu -5 307 1 298 157 20 0 chr1 29245866 29245917 -252947747 + AluSp SINE Alu 134 185 -118 612 259 49 16 chr1 29246017 29246202 -252947462 - MIR SINE MIR -59 203 13 343 229 124 57 chr1 29246271 29246376 -252947288 - L2 LINE L2 0 3313 3202 1900 120 46 0 chr1 29246376 29246659 -252947005 - AluSx SINE Alu -16 296 1 763 156 16 0 chr1 29246689 29246811 -252946853 - AluJb SINE Alu -187 125 2 263 327 84 0 chr1 29247105 29247147 -252946517 - MIR3 SINE MIR -3 205 168 2075 109 0 23 chr1 29247147 29247450 -252946214 - AluSx SINE Alu -16 296 1 263 327 84 0 chr1 29247450 29247514 -252946150 - MIR3 SINE MIR -40 168 90 2220 92 3 10 chr1 29247601 29247906 -252945758 - AluSg SINE Alu -6 304 2 1873 144 23 3 chr1 29248332 29248638 -252945026 - AluSx SINE Alu 0 312 1 1212 196 71 25 chr1 29248640 29248920 -252944744 - AluJo SINE Alu -16 296 4 2345 88 3 0 chr1 29248935 29249241 -252944423 - AluSx SINE Alu -5 307 1 1629 188 11 0 chr1 29249247 29249534 -252944130 - AluJb SINE Alu -22 290 1 237 225 135 0 chr1 29249589 29249678 -252943986 + MIR3 SINE MIR 99 199 -9 460 274 36 63 chr1 29249797 29249854 -252943810 - MIR SINE MIR -15 247 190 2069 128 3 3 chr1 29249854 29250159 -252943505 - AluSg SINE Alu -5 305 1 2120 116 0 3 chr1 29250159 29250460 -252943204 - AluSx SINE Alu -12 300 1 460 274 36 63 chr1 29250460 29250638 -252943026 - MIR SINE MIR -70 192 18 1757 244 74 41 chr1 29250687 29251348 -252942316 + L2 LINE L2 742 1424 -1890 789 97 9 0 chr1 29251415 29251527 -252942137 + MER41E LTR ERV1 15 127 -385 1307 166 32 16 chr1 29251527 29251831 -252941833 + MER61B LTR ERV1 1 396 -28 2397 117 20 30 chr1 29251841 29252012 -252941652 + MER41E LTR ERV1 124 295 -217 2244 110 0 3 chr1 29252012 29252322 -252941342 + AluSx SINE Alu 1 309 -3 2397 117 20 30 chr1 29252322 29252543 -252941121 + MER41E LTR ERV1 295 512 0 521 245 103 86 chr1 29252543 29252775 -252940889 + L2 LINE L2 1422 1648 -1666 1589 156 7 28 chr1 29252775 29253093 -252940571 + AluJo SINE Alu 1 312 0 2240 86 3 3 chr1 29253098 29253400 -252940264 + AluSx SINE Alu 1 302 -10 521 245 103 86 chr1 29253400 29253499 -252940165 + L2 LINE L2 1651 1766 -1548 1978 105 7 14 chr1 29253624 29253784 -252939880 - AluSx SINE Alu -18 294 135 2166 88 7 3 chr1 29253784 29254091 -252939573 - AluSq SINE Alu -5 308 1 1978 105 7 14 chr1 29254091 29254226 -252939438 - AluSx SINE Alu -177 135 1 266 208 65 0 chr1 29254263 29254340 -252939324 - MIR3 SINE MIR -52 156 75 446 226 0 0 chr1 29255365 29255449 -252938215 + MER63A DNA MER1_type 90 173 -37 235 313 61 35 chr1 29255814 29256012 -252937652 + L2 LINE L2 1340 1542 -1772 2288 97 0 7 chr1 29256013 29256322 -252937342 - AluSx SINE Alu -5 307 1 489 293 172 23 chr1 29256385 29256733 -252936931 + L2 LINE L2 2830 3229 -84 1703 61 0 73 chr1 29257461 29257706 -252935958 + AluSg/x SINE Alu 85 311 -1 789 235 69 14 chr1 29258289 29258506 -252935158 + MIR SINE MIR 20 248 -14 1971 117 4 0 chr1 29258506 29258837 -252934827 - AluSx SINE Alu 0 332 1 453 308 48 0 chr1 29258887 29259033 -252934631 - MIR SINE MIR -29 233 81 354 179 317 16 chr1 29259714 29259761 -252933903 + MIR SINE MIR 103 135 -127 2246 112 0 0 chr1 29259761 29260074 -252933590 + AluSq SINE Alu 1 313 0 354 179 317 16 chr1 29260074 29260149 -252933515 + MIR SINE MIR 135 262 0 262 240 21 13 chr1 29260443 29260553 -252933111 + LTR33A LTR ERVL 433 514 -9 183 235 0 0 chr1 29260891 29260925 -252932739 - MIR SINE MIR -8 254 221 483 283 0 0 chr1 29261046 29261159 -252932505 + LTR16A LTR ERVL 190 302 -148 303 340 129 0 chr1 29261360 29261554 -252932110 + L2 LINE L2 2555 2773 -541 414 227 73 9 chr1 29261731 29261841 -252931823 + LTR16A LTR ERVL 146 262 -188 2366 79 0 0 chr1 29261854 29262157 -252931507 - AluY SINE Alu -7 304 2 380 308 0 39 chr1 29262195 29262325 -252931339 + L2 LINE L2 3147 3271 -1 473 318 60 0 chr1 29262556 29262707 -252930957 - MIR SINE MIR -56 206 47 2175 118 3 0 chr1 29262798 29263104 -252930560 - AluSx SINE Alu -5 307 1 205 208 125 0 chr1 29263153 29263201 -252930463 + MIR SINE MIR 90 143 -65 2100 110 3 7 chr1 29263495 29263804 -252929860 + AluSq SINE Alu 1 308 -5 22 0 0 0 chr1 29263838 29263860 -252929804 + AT_rich Low_complexity Low_complexity 1 22 0 550 301 74 9 chr1 29264285 29264501 -252929163 - L2 LINE L2 -2 3311 3082 268 132 0 0 chr1 29264530 29264568 -252929096 - AluSq SINE Alu -132 171 134 2031 108 7 29 chr1 29264568 29264895 -252928769 - AluSq SINE Alu 0 313 1 616 198 15 99 chr1 29264999 29265076 -252928588 + MIR SINE MIR 66 148 -114 2098 112 3 3 chr1 29265076 29265371 -252928293 - AluSq SINE Alu -16 297 3 2154 93 3 0 chr1 29265372 29265663 -252928001 - AluSx SINE Alu -20 292 1 616 198 15 99 chr1 29265663 29265785 -252927879 + MIR SINE MIR 147 250 -12 265 236 0 0 chr1 29266396 29266451 -252927213 - MIR SINE MIR -113 149 95 604 165 22 3 chr1 29266747 29266895 -252926769 - LTR37A LTR ERV1 -6 420 289 269 267 14 89 chr1 29266897 29267043 -252926621 - LTR37A LTR ERV1 -241 185 51 257 180 0 16 chr1 29267413 29267474 -252926190 + CT-rich Low_complexity Low_complexity 2 61 0 908 120 0 0 chr1 29267480 29267613 -252926051 - FLAM_C SINE Alu 0 133 1 2071 62 0 69 chr1 29268024 29268330 -252925334 - AluSc SINE Alu -19 290 6 378 283 145 0 chr1 29268376 29268514 -252925150 - MER5A DNA MER1_type -6 183 26 292 260 0 0 chr1 29269299 29269372 -252924292 - MIR SINE MIR -111 151 79 1049 109 12 6 chr1 29269508 29269673 -252923991 - AluSg/x SINE Alu -17 295 130 271 301 65 11 chr1 29270105 29270198 -252923466 + MIR SINE MIR 98 195 -67 340 296 134 43 chr1 29270206 29270392 -252923272 + MIR SINE MIR 9 211 -51 2095 104 21 0 chr1 29270494 29270783 -252922881 + AluSg SINE Alu 3 297 -13 660 217 29 0 chr1 29270793 29270931 -252922733 + MIR SINE MIR 50 191 -71 784 263 93 32 chr1 29274340 29274546 -252919118 - L2 LINE L2 -32 3281 3048 2314 99 0 0 chr1 29274546 29274848 -252918816 + AluSx SINE Alu 1 302 -10 784 263 93 32 chr1 29274848 29274953 -252918711 - L2 LINE L2 -265 3048 2951 274 318 52 19 chr1 29275080 29275234 -252918430 - MIR SINE MIR 0 262 104 2175 66 4 0 chr1 29275421 29275693 -252917971 - AluSg SINE Alu -12 298 26 676 274 100 73 chr1 29275795 29276120 -252917544 + LTR33 LTR ERVL 67 382 -139 1756 134 4 0 chr1 29276120 29276382 -252917282 - AluSx SINE Alu -49 263 1 676 274 100 73 chr1 29276382 29276428 -252917236 + LTR33 LTR ERVL 382 425 -96 1674 151 39 7 chr1 29276428 29276712 -252916952 - AluJo SINE Alu -19 293 1 676 274 100 73 chr1 29276712 29276780 -252916884 + LTR33 LTR ERVL 425 519 -2 1556 100 0 0 chr1 29278404 29278614 -252915050 - AluSq SINE Alu -14 299 90 499 269 67 21 chr1 29278932 29279110 -252914554 + MIR SINE MIR 64 249 -13 925 94 23 0 chr1 29279575 29279703 -252913961 - AluY SINE Alu -180 131 1 1901 101 77 3 chr1 29280464 29280750 -252912914 - AluSx SINE Alu -5 307 1 2127 114 3 0 chr1 29281875 29282182 -252911482 + AluSp SINE Alu 1 308 -5 21 36 0 0 chr1 29283349 29283377 -252910287 + GC_rich Low_complexity Low_complexity 1 28 0 31 26 0 0 chr1 29283977 29284015 -252909649 + GC_rich Low_complexity Low_complexity 1 38 0 27 81 0 0 chr1 29284226 29284288 -252909376 + GC_rich Low_complexity Low_complexity 1 62 0 218 296 0 31 chr1 29284363 29284461 -252909203 + G-rich Low_complexity Low_complexity 5 99 0 30 0 0 0 chr1 29284710 29284740 -252908924 + GC_rich Low_complexity Low_complexity 1 30 0 195 286 24 71 chr1 29284962 29285088 -252908576 + MIR3 SINE MIR 13 132 -76 2272 82 0 7 chr1 29285364 29285668 -252907996 + AluSx SINE Alu 1 302 -10 1955 108 33 10 chr1 29285718 29286023 -252907641 + AluSx SINE Alu 1 312 0 190 360 0 13 chr1 29286023 29286098 -252907566 - MIR SINE MIR -77 131 58 189 246 43 14 chr1 29287242 29287311 -252906353 + MIR SINE MIR 36 106 -156 411 262 55 0 chr1 29287368 29287524 -252906140 - MIR SINE MIR -67 141 20 260 227 23 45 chr1 29287641 29287729 -252905935 + L2 LINE L2 3187 3272 0 2138 120 0 16 chr1 29287732 29287868 -252905796 + AluSx SINE Alu 1 138 -174 2049 110 0 10 chr1 29287868 29288186 -252905478 + AluSc SINE Alu 1 309 0 2138 120 0 16 chr1 29288186 29288365 -252905299 + AluSx SINE Alu 138 311 -1 296 24 24 0 chr1 29288381 29288422 -252905242 + (GA)n Simple_repeat Simple_repeat 1 42 0 180 0 0 0 chr1 29288443 29288463 -252905201 + (GAAAA)n Simple_repeat Simple_repeat 1 20 0 981 178 28 6 chr1 29288463 29288638 -252905026 + AluSg/x SINE Alu 134 312 0 492 143 0 0 chr1 29288638 29288722 -252904942 + (GGAA)n Simple_repeat Simple_repeat 1 84 0 1086 121 24 0 chr1 29288859 29289048 -252904616 - AluSg/x SINE Alu 0 303 111 2135 122 0 7 chr1 29290064 29290401 -252903263 - AluSx SINE Alu 0 312 1 285 356 0 29 chr1 29291062 29291190 -252902474 - MIR SINE MIR -65 143 27 2051 120 13 10 chr1 29291190 29291499 -252902165 - AluSq SINE Alu -1 312 3 285 356 0 29 chr1 29291499 29291512 -252902152 - MIR SINE MIR -181 27 15 201 176 0 0 chr1 29291512 29291546 -252902118 + T-rich Low_complexity Low_complexity 1 34 0 1420 100 0 0 chr1 29291571 29291761 -252901903 + AluSg/x SINE Alu 117 306 -6 1488 180 25 11 chr1 29291761 29292039 -252901625 - AluJo SINE Alu -30 282 1 1875 140 3 17 chr1 29292041 29292341 -252901323 - AluJb SINE Alu -15 297 2 428 132 0 40 chr1 29292582 29292658 -252901006 + Alu SINE Alu 237 309 -3 921 301 54 15 chr1 29292665 29293074 -252900590 + L1ME LINE L1 5338 5762 -408 2129 98 3 0 chr1 29293074 29293361 -252900303 + AluSp SINE Alu 25 312 -1 1480 120 152 4 chr1 29293374 29293624 -252900040 + AluJb SINE Alu 1 287 -25 2143 118 44 25 chr1 29293642 29293708 -252899956 - MER41E LTR ERV1 -142 370 307 2324 89 3 0 chr1 29293708 29294012 -252899652 - AluSq SINE Alu -8 305 1 2143 118 44 25 chr1 29294012 29294308 -252899356 - MER41E LTR ERV1 -205 307 1 1181 241 192 14 chr1 29294389 29295239 -252898425 - L2 LINE L2 -1 3312 2284 480 228 29 66 chr1 29295242 29295421 -252898243 + AluSg/x SINE Alu 152 325 0 848 228 73 79 chr1 29295422 29295630 -252898034 - L2 LINE L2 -1078 2236 2028 1920 131 7 7 chr1 29295630 29295928 -252897736 + AluSx SINE Alu 3 300 -12 848 228 73 79 chr1 29295928 29295953 -252897711 - L2 LINE L2 -1286 2028 2004 2107 126 0 0 chr1 29295953 29296255 -252897409 + AluSx SINE Alu 1 302 -10 848 228 73 79 chr1 29296255 29296336 -252897328 - L2 LINE L2 -1310 2004 1923 2173 138 79 3 chr1 29296336 29296771 -252896893 + L1M4 LINE L1 5211 5669 -509 2129 108 3 22 chr1 29296773 29297087 -252896577 + AluSx SINE Alu 1 308 -4 1136 85 24 0 chr1 29297099 29297263 -252896401 + AluY SINE Alu 2 169 -142 2150 116 7 3 chr1 29297442 29297745 -252895919 - AluSx SINE Alu -6 306 3 1939 146 0 13 chr1 29297758 29298073 -252895591 - AluSx SINE Alu -1 311 1 1893 151 0 3 chr1 29298076 29298375 -252895289 - AluSx SINE Alu -11 301 4 1642 180 17 3 chr1 29298376 29298676 -252894988 - AluJb SINE Alu -8 304 1 771 216 119 16 chr1 29298700 29298894 -252894770 + L1MC4 LINE L1 6766 6979 -1063 1633 164 7 17 chr1 29298947 29299239 -252894425 - AluJo SINE Alu -14 298 10 344 159 43 0 chr1 29299249 29299318 -252894346 + MER69 DNA AcHobo 2453 2524 -2 619 175 58 0 chr1 29299323 29299443 -252894221 - MIR SINE MIR -109 153 27 230 351 147 11 chr1 29299595 29299786 -252893878 - MIR SINE MIR -25 237 21 244 284 136 0 chr1 29300090 29300178 -252893486 + MIR SINE MIR 23 122 -140 180 212 0 0 chr1 29300227 29300260 -252893404 + MIR SINE MIR 218 250 -12 366 224 0 0 chr1 29300265 29300332 -252893332 + L1MC4 LINE L1 6637 6703 -1339 * 380 276 23 0 chr1 29300292 29300379 -252893285 - L1MC4 LINE L1 -1339 6703 6615 2052 128 0 0 chr1 29300379 29300668 -252892996 - AluSx SINE Alu -23 289 1 425 292 124 0 chr1 29302009 29302048 -252891616 - MIR SINE MIR -46 216 183 2130 102 0 13 chr1 29302048 29302352 -252891312 - AluSx SINE Alu -12 300 1 425 292 124 0 chr1 29302352 29302497 -252891167 - MIR SINE MIR -79 183 9 1095 212 68 24 chr1 29302813 29303063 -252890601 - MIR SINE MIR 0 262 2 1640 151 6 63 chr1 29305945 29306078 -252887586 + AluJo SINE Alu 11 150 -162 2210 103 0 0 chr1 29306078 29306378 -252887286 + AluSx SINE Alu 1 300 -12 1537 103 66 4 chr1 29306381 29306623 -252887041 + AluSg1 SINE Alu 53 309 0 1640 151 6 63 chr1 29306623 29306803 -252886861 + AluJo SINE Alu 152 310 -2 2320 88 0 0 chr1 29307160 29307456 -252886208 - AluSq SINE Alu -17 296 1 493 350 111 37 chr1 29307853 29308285 -252885379 - L2 LINE L2 0 3272 2809 2364 76 0 0 chr1 29308464 29308785 -252884879 - AluY SINE Alu 0 321 1 248 206 151 111 chr1 29308790 29308888 -252884776 - MIR SINE MIR -10 252 146 1846 139 20 14 chr1 29308888 29309049 -252884615 - AluSx SINE Alu -15 297 132 1970 97 13 13 chr1 29309049 29309357 -252884307 - AluSp SINE Alu -5 308 1 1846 139 20 14 chr1 29309357 29309490 -252884174 - AluSx SINE Alu -180 132 1 248 206 151 111 chr1 29309490 29309517 -252884147 - MIR SINE MIR -116 146 122 636 302 42 31 chr1 29309518 29309806 -252883858 + MER34 LTR ERV1 3 293 -249 2281 63 0 3 chr1 29309907 29310191 -252883473 + AluSq SINE Alu 14 296 -17 2369 69 0 3 chr1 29310191 29310495 -252883169 + AluY SINE Alu 1 303 -8 2214 103 0 3 chr1 29310644 29310945 -252882719 - AluSg SINE Alu -10 300 1 237 342 0 13 chr1 29310993 29311069 -252882595 + MIR SINE MIR 31 105 -157 2004 137 7 3 chr1 29311091 29311397 -252882267 + AluSx SINE Alu 5 311 -1 249 283 0 0 chr1 29311749 29311809 -252881855 + L2 LINE L2 3211 3270 -2 * 574 222 66 75 chr1 29311807 29311948 -252881716 - MIR SINE MIR 0 262 122 1712 141 3 44 chr1 29311948 29312245 -252881419 + AluJo SINE Alu 12 296 -16 574 222 66 75 chr1 29312245 29312315 -252881349 - MIR SINE MIR -140 122 53 1974 105 49 0 chr1 29312323 29312609 -252881055 - AluSg SINE Alu -10 300 1 6408 71 15 41 chr1 29312808 29313785 -252879879 - SVA Other Other -2 1384 433 4635 76 68 55 chr1 29313803 29314603 -252879061 - SVA Other Other -520 866 57 378 0 0 0 chr1 29314603 29314645 -252879019 + (GGGAGA)n Simple_repeat Simple_repeat 5 46 0 2213 95 3 0 chr1 29314649 29314943 -252878721 - AluSx SINE Alu -17 295 1 214 154 0 96 chr1 29315216 29315268 -252878396 + MIR SINE MIR 177 223 -39 2135 103 3 0 chr1 29315403 29315693 -252877971 + AluSq SINE Alu 1 291 -22 2114 108 3 13 chr1 29315771 29316086 -252877578 + AluSx SINE Alu 1 312 0 295 244 50 76 chr1 29316293 29316315 -252877349 + L2 LINE L2 2690 2711 -603 1840 155 30 0 chr1 29316315 29316611 -252877053 + AluJo SINE Alu 1 305 -7 295 244 50 76 chr1 29316611 29316707 -252876957 + L2 LINE L2 2711 2805 -509 705 241 71 14 chr1 29316712 29316924 -252876740 + MIR SINE MIR 39 262 0 1343 65 0 6 chr1 29317186 29317355 -252876309 + AluY SINE Alu 1 168 -143 1939 192 71 21 chr1 29317355 29317792 -252875872 - LTR2B LTR ERV1 0 490 32 1036 70 14 0 chr1 29317811 29317953 -252875711 + AluY SINE Alu 165 308 -3 2468 68 0 0 chr1 29318097 29318405 -252875259 + AluY SINE Alu 1 308 -3 1026 73 0 0 chr1 29319308 29319445 -252874219 + AluSg/x SINE Alu 175 311 -1 537 267 149 9 chr1 29320371 29320592 -252873072 + MLT1L LTR MaLR 39 290 -325 889 303 24 1 chr1 29320643 29320898 -252872766 + MIR SINE MIR 2 262 0 342 172 0 0 chr1 29320900 29320958 -252872706 + MLT1L LTR MaLR 335 392 -223 1034 129 10 67 chr1 29321013 29321206 -252872458 - AluJb SINE Alu 0 312 131 2031 93 18 0 chr1 29321225 29321538 -252872126 + AluSx SINE Alu 1 318 0 428 0 19 0 chr1 29321777 29321829 -252871835 + (TG)n Simple_repeat Simple_repeat 2 54 0 1225 161 22 52 chr1 29321830 29322097 -252871567 - AluJo SINE Alu -53 259 1 836 181 0 0 chr1 29322147 29322280 -252871384 - FLAM_A SINE Alu 0 133 1 393 185 0 12 chr1 29322316 29322397 -252871267 - MER116 DNA Mariner 0 80 1 768 275 61 26 chr1 29322415 29322757 -252870907 - L1ME3A LINE L1 -220 5950 5597 195 278 237 0 chr1 29322935 29323032 -252870632 - MIR SINE MIR -57 205 86 277 253 0 36 chr1 29323046 29323129 -252870535 + MIR SINE MIR 90 169 -93 2107 75 4 4 chr1 29323179 29323486 -252870178 - AluSg SINE Alu 0 307 1 400 296 154 24 chr1 29323841 29324088 -252869576 - L2 LINE L2 -2 3270 2992 266 322 81 20 chr1 29325200 29325349 -252868315 - MIR SINE MIR -21 241 84 492 331 35 6 chr1 29325585 29325757 -252867907 + MIR SINE MIR 20 196 -66 203 320 0 0 chr1 29325763 29325813 -252867851 + L2 LINE L2 3184 3233 -39 369 263 122 19 chr1 29326108 29326264 -252867400 + MIR SINE MIR 78 249 -13 322 179 35 172 chr1 29326256 29326331 -252867333 + L2 LINE L2 3189 3273 -40 * 2161 82 13 16 chr1 29326331 29326636 -252867028 + AluY SINE Alu 1 304 -7 322 179 35 172 chr1 29326636 29326648 -252867016 + L2 LINE L2 3273 3285 -28 1896 114 14 7 chr1 29326648 29326952 -252866712 + AluSx SINE Alu 1 306 0 322 179 35 172 chr1 29326952 29327007 -252866657 + L2 LINE L2 3285 3313 0 278 279 122 55 chr1 29327254 29327491 -252866173 - L2 LINE L2 -24 3248 2996 861 188 79 41 chr1 29327494 29327529 -252866135 - L1MC4 LINE L1 -31 8011 7979 1585 179 6 31 chr1 29327529 29327847 -252865817 + AluJo SINE Alu 1 310 -2 861 188 79 41 chr1 29327847 29328383 -252865281 - L1MC4 LINE L1 -63 7979 7317 250 258 0 75 chr1 29328466 29328559 -252865105 - MIR SINE MIR -93 115 30 2239 92 0 0 chr1 29328794 29329089 -252864575 - AluSg SINE Alu -15 295 1 4313 119 19 34 chr1 29329577 29329606 -252864058 - L1MB3 LINE L1 -14 6169 6141 2147 127 0 0 chr1 29329606 29329905 -252863759 + AluSx SINE Alu 1 299 -13 4313 119 19 34 chr1 29329905 29330152 -252863512 - L1MB3 LINE L1 -42 6141 5892 1995 145 0 0 chr1 29330152 29330455 -252863209 - AluJb SINE Alu -7 305 3 4313 119 19 34 chr1 29330455 29330875 -252862789 - L1MB3 LINE L1 -291 5892 5483 1020 152 147 0 chr1 29330909 29331113 -252862551 + MER46A DNA MER2_type 2 235 -1 2383 86 0 9 chr1 29331116 29331431 -252862233 - AluSx SINE Alu 0 312 1 287 303 96 10 chr1 29333757 29333917 -252859747 - MIR SINE MIR -64 144 14 2270 80 3 16 chr1 29334992 29335304 -252858360 - AluSp SINE Alu -5 308 1 248 161 74 62 chr1 29335362 29335443 -252858221 - MIR SINE MIR -112 150 69 1944 127 0 39 chr1 29336047 29336207 -252857457 - AluSx SINE Alu -16 296 152 2347 77 0 0 chr1 29336207 29336505 -252857159 - AluY SINE Alu -13 298 1 1944 127 0 39 chr1 29336505 29336652 -252857012 - AluSx SINE Alu -160 152 1 2163 103 13 0 chr1 29337259 29337560 -252856104 - AluSx SINE Alu -7 305 1 312 216 148 0 chr1 29337584 29337672 -252855992 - MIR SINE MIR -75 133 33 2048 107 0 4 chr1 29339081 29339361 -252854303 - AluSq SINE Alu -24 289 11 1703 106 12 4 chr1 29339363 29339608 -252854056 - AluSg SINE Alu -63 247 1 1705 144 53 7 chr1 29339633 29339918 -252853746 + AluJb SINE Alu 2 299 -13 1902 76 0 59 chr1 29339936 29340224 -252853440 + AluY SINE Alu 1 271 -40 432 214 24 63 chr1 29340392 29340518 -252853146 + L2 LINE L2 3193 3313 0 1672 157 0 34 chr1 29340624 29340917 -252852747 + AluJo SINE Alu 13 295 -17 223 244 39 13 chr1 29341520 29341598 -252852066 - L2 LINE L2 -23 3290 3211 2290 84 0 0 chr1 29341821 29342117 -252851547 - AluSg1 SINE Alu -12 297 2 359 246 197 0 chr1 29342723 29342865 -252850799 + MIR SINE MIR 43 212 -50 1929 104 25 53 chr1 29342901 29343219 -252850445 + AluSc SINE Alu 1 309 0 1525 107 0 13 chr1 29343222 29343447 -252850217 + AluSc SINE Alu 79 300 -9 2262 88 3 3 chr1 29343630 29343936 -252849728 - AluSp SINE Alu -7 306 1 272 150 0 0 chr1 29343936 29343976 -252849688 - Alu SINE Alu -268 40 1 765 181 25 12 chr1 29344272 29344432 -252849232 + MER5A DNA MER1_type 10 171 -18 1376 173 112 7 chr1 29344508 29344786 -252848878 - AluJb SINE Alu -5 307 1 1755 112 22 77 chr1 29344813 29345125 -252848539 + AluSx SINE Alu 1 295 -17 223 226 75 43 chr1 29345130 29345223 -252848441 + L2 LINE L2 2934 3029 -243 1932 159 13 0 chr1 29346182 29346490 -252847174 + AluJb SINE Alu 1 312 0 1498 162 7 65 chr1 29346550 29346858 -252846806 + AluJb SINE Alu 3 292 -20 1861 252 57 13 chr1 29346861 29347334 -252846330 + MER21B LTR ERV1 308 801 -62 368 176 24 12 chr1 29347359 29347444 -252846220 + L1MC5 LINE L1 7397 7482 -479 24 32 0 0 chr1 29347457 29347488 -252846176 + AT_rich Low_complexity Low_complexity 1 31 0 1803 112 16 70 chr1 29347491 29347641 -252846023 + AluSq SINE Alu 1 158 -155 2305 99 0 0 chr1 29347641 29347954 -252845710 + AluSp SINE Alu 1 313 0 324 0 0 0 chr1 29347958 29347994 -252845670 + (TA)n Simple_repeat Simple_repeat 2 37 0 1803 112 16 70 chr1 29347994 29348152 -252845512 + AluSq SINE Alu 161 297 -16 892 147 0 0 chr1 29348154 29348283 -252845381 - FLAM_C SINE Alu -4 129 1 1961 123 13 19 chr1 29348434 29348752 -252844912 + THE1C LTR MaLR 1 316 -59 479 83 14 0 chr1 29348773 29348845 -252844819 - THE1B LTR MaLR 0 364 292 2319 87 0 3 chr1 29348846 29349157 -252844507 + AluSx SINE Alu 1 310 -2 2369 58 7 0 chr1 29349173 29349467 -252844197 + AluY SINE Alu 1 296 -15 423 119 15 0 chr1 29349467 29349534 -252844130 + THE1C LTR MaLR 307 374 -1 789 94 14 22 chr1 29349534 29349672 -252843992 + THE1C-int LTR MaLR 1444 1580 0 1763 141 80 47 chr1 29349672 29349961 -252843703 + THE1C LTR MaLR 1 306 -69 2067 125 0 0 chr1 29349961 29350257 -252843407 - AluSc SINE Alu -13 296 1 1763 141 80 47 chr1 29350257 29350330 -252843334 + THE1C LTR MaLR 306 375 0 2436 216 31 25 chr1 29350330 29350416 -252843248 + L1MB2 LINE L1 5522 5606 -565 2276 100 7 0 chr1 29350416 29350725 -252842939 + AluSq SINE Alu 1 311 -2 2436 216 31 25 chr1 29350725 29350897 -252842767 + L1MB2 LINE L1 5606 5775 -396 1688 86 127 15 chr1 29350897 29351164 -252842500 + AluSg SINE Alu 1 297 -13 2436 216 31 25 chr1 29351164 29351508 -252842156 + L1MB2 LINE L1 5775 6132 -39 1492 173 47 47 chr1 29351508 29351651 -252842013 + AluJb SINE Alu 1 143 -159 2068 130 0 13 chr1 29351651 29351959 -252841705 + AluSg SINE Alu 1 304 -6 1492 173 47 47 chr1 29351959 29352116 -252841548 + AluJb SINE Alu 142 301 -1 2011 119 0 44 chr1 29352144 29352339 -252841325 + AluSg SINE Alu 1 178 -132 2338 87 7 0 chr1 29352339 29352631 -252841033 - AluSc SINE Alu -19 290 1 2011 119 0 44 chr1 29352631 29352753 -252840911 + AluSg SINE Alu 178 304 -6 2331 85 0 0 chr1 29352753 29353034 -252840630 + AluSx SINE Alu 1 308 0 204 0 37 0 chr1 29353034 29353061 -252840603 + (CAAA)n Simple_repeat Simple_repeat 1 164 0 233 95 48 0 chr1 29353063 29353105 -252840559 + L1MB2 LINE L1 6118 6161 -10 2312 100 3 0 chr1 29353106 29353396 -252840268 - AluSx SINE Alu -21 291 1 1342 169 20 16 chr1 29353401 29353656 -252840008 - AluJo SINE Alu -12 300 45 1396 165 4 49 chr1 29353692 29353959 -252839705 + AluJb SINE Alu 42 296 -16 2441 96 0 0 chr1 29354085 29354388 -252839276 - AluSq SINE Alu -10 303 1 1023 230 69 45 chr1 29354491 29354705 -252838959 + MER2 DNA MER2_type 3 229 -116 831 150 0 0 chr1 29354705 29354838 -252838826 - FLAM_A SINE Alu 0 133 1 1023 230 69 45 chr1 29354838 29354958 -252838706 + MER2 DNA MER2_type 229 345 0 2320 177 32 9 chr1 29354958 29355422 -252838242 - L1MB3 LINE L1 -277 5906 5432 1036 193 0 0 chr1 29355423 29355589 -252838075 - AluJb SINE Alu -20 292 127 331 332 48 9 chr1 29355832 29356061 -252837603 - L1MB3 LINE L1 -1164 4982 4745 859 241 100 17 chr1 29356066 29356357 -252837307 + MER46C DNA MER2_type 19 333 -5 204 281 109 0 chr1 29356370 29356434 -252837230 - MIR SINE MIR -74 188 118 2340 110 0 0 chr1 29356434 29356742 -252836922 + AluSg SINE Alu 1 308 -2 286 228 114 0 chr1 29356746 29356825 -252836839 + FLAM_C SINE Alu 25 112 -21 432 0 0 0 chr1 29356825 29356873 -252836791 + (CA)n Simple_repeat Simple_repeat 2 49 0 236 179 0 0 chr1 29356897 29356936 -252836728 + Alu SINE Alu 240 278 -24 306 364 88 50 chr1 29356975 29357236 -252836428 + L2 LINE L2 2997 3267 -5 2232 121 7 0 chr1 29357239 29357546 -252836118 + AluSq SINE Alu 1 309 -4 206 292 254 15 chr1 29357669 29357799 -252835865 - MIR3 SINE MIR -15 193 33 1120 132 6 0 chr1 29357957 29358116 -252835548 + AluSp SINE Alu 137 296 -17 2408 99 3 0 chr1 29358116 29358419 -252835245 + AluSp SINE Alu 1 304 -9 2535 52 7 3 chr1 29358569 29358878 -252834786 - AluY SINE Alu -1 310 1 2239 113 0 0 chr1 29358956 29359280 -252834384 + AluSx SINE Alu 1 324 0 2274 119 3 0 chr1 29359286 29359588 -252834076 + AluSg SINE Alu 1 303 -7 221 287 167 0 chr1 29359647 29359755 -252833909 + MIR SINE MIR 40 165 -97 1958 101 36 22 chr1 29360377 29360655 -252833009 + AluSx SINE Alu 13 294 -18 289 274 44 18 chr1 29360808 29360921 -252832743 + MIR SINE MIR 122 237 -25 216 234 191 53 chr1 29361683 29361777 -252831887 - MIR SINE MIR -67 141 35 901 179 19 0 chr1 29362819 29362981 -252830683 + MER45A DNA AcHobo 2 166 -12 559 315 137 15 chr1 29362998 29363181 -252830483 + L2 LINE L2 1492 1651 -1663 1556 149 19 76 chr1 29363181 29363497 -252830167 - AluJo SINE Alu -14 298 1 559 315 137 15 chr1 29363497 29363640 -252830024 + L2 LINE L2 1651 1775 -1539 1995 114 45 14 chr1 29363640 29363929 -252829735 - AluSx SINE Alu -14 298 1 559 315 137 15 chr1 29363929 29364074 -252829590 + L2 LINE L2 1775 2022 -1292 1695 236 81 33 chr1 29364187 29364669 -252828995 + MER69 DNA AcHobo 41 545 -1981 1275 153 0 47 chr1 29364676 29364776 -252828888 + AluJb SINE Alu 1 104 -208 852 45 0 0 chr1 29364776 29364886 -252828778 + L1PA5 LINE L1 6040 6149 -5 1275 153 0 47 chr1 29364886 29365057 -252828607 + AluJb SINE Alu 104 304 -8 1923 150 3 35 chr1 29365059 29365261 -252828403 + AluSx SINE Alu 1 208 -104 2303 116 0 3 chr1 29365261 29365564 -252828100 + AluSq SINE Alu 1 302 -11 2209 91 27 7 chr1 29365564 29365860 -252827804 + AluSg SINE Alu 1 303 -7 1923 150 3 35 chr1 29365860 29365970 -252827694 + AluSx SINE Alu 206 304 -8 859 223 69 156 chr1 29365974 29366136 -252827528 + L1MC4a LINE L1 6470 6644 -1164 243 0 0 0 chr1 29366136 29366163 -252827501 + (TG)n Simple_repeat Simple_repeat 2 28 0 859 223 69 156 chr1 29366163 29366226 -252827438 + L1MC4a LINE L1 6644 6711 -1097 2269 119 7 3 chr1 29366226 29366529 -252827135 - AluSx SINE Alu -6 306 3 859 223 69 156 chr1 29366529 29366542 -252827122 + L1MC4a LINE L1 6711 6724 -1084 2066 146 0 13 chr1 29366542 29366857 -252826807 - AluSx SINE Alu -1 311 1 2015 151 0 3 chr1 29366860 29367159 -252826505 - AluSx SINE Alu -11 301 4 1765 180 17 3 chr1 29367160 29367460 -252826204 - AluJb SINE Alu -8 304 1 859 223 69 156 chr1 29367460 29367675 -252825989 + L1MC4a LINE L1 6725 6891 -917 1749 164 7 17 chr1 29367731 29368023 -252825641 - AluJo SINE Alu -14 298 10 344 159 43 0 chr1 29368033 29368102 -252825562 + MER69 DNA AcHobo 2453 2524 -2 618 175 58 0 chr1 29368107 29368227 -252825437 - MIR SINE MIR -109 153 27 210 351 147 11 chr1 29368379 29368570 -252825094 - MIR SINE MIR -25 237 21 240 284 136 0 chr1 29368874 29368962 -252824702 + MIR SINE MIR 23 122 -140 182 212 0 0 chr1 29369011 29369044 -252824620 + MIR SINE MIR 218 250 -12 364 224 0 0 chr1 29369049 29369116 -252824548 + L1MC4 LINE L1 6637 6703 -1339 352 294 47 0 chr1 29369072 29369157 -252824507 - L1MC4 LINE L1 -1339 6703 6615 * 2183 128 0 0 chr1 29369157 29369446 -252824218 - AluSx SINE Alu -23 289 1 407 286 124 0 chr1 29370787 29370826 -252822838 - MIR SINE MIR -46 216 183 2266 102 0 13 chr1 29370826 29371130 -252822534 - AluSx SINE Alu -12 300 1 407 286 124 0 chr1 29371130 29371275 -252822389 - MIR SINE MIR -79 183 9 1041 220 68 24 chr1 29371591 29371841 -252821823 - MIR SINE MIR 0 262 2 1760 151 6 72 chr1 29374710 29374856 -252818808 + AluJo SINE Alu 2 156 -156 2345 103 0 0 chr1 29374856 29375156 -252818508 + AluSx SINE Alu 1 300 -12 1640 103 66 4 chr1 29375159 29375401 -252818263 + AluSg1 SINE Alu 53 309 0 1760 151 6 72 chr1 29375401 29375581 -252818083 + AluJo SINE Alu 158 310 -2 2463 85 0 0 chr1 29375940 29376234 -252817430 - AluSq SINE Alu -19 294 1 467 350 111 37 chr1 29376631 29377063 -252816601 - L2 LINE L2 0 3272 2809 2507 76 0 0 chr1 29377242 29377563 -252816101 - AluY SINE Alu 0 321 1 250 206 151 111 chr1 29377568 29377666 -252815998 - MIR SINE MIR -10 252 146 1984 131 20 20 chr1 29377666 29377827 -252815837 - AluSx SINE Alu -15 297 134 2249 99 13 0 chr1 29377827 29378131 -252815533 - AluSp SINE Alu -5 308 1 1984 131 20 20 chr1 29378131 29378266 -252815398 - AluSx SINE Alu -177 135 1 250 206 151 111 chr1 29378266 29378293 -252815371 - MIR SINE MIR -116 146 122 555 257 127 84 chr1 29378294 29378683 -252814981 + MER34 LTR ERV1 3 374 -168 2413 87 0 0 chr1 29378683 29378982 -252814682 + AluSx SINE Alu 14 312 0 555 257 127 84 chr1 29378982 29378993 -252814671 + MER34 LTR ERV1 374 383 -159 2270 74 53 3 chr1 29378993 29379278 -252814386 + AluSx SINE Alu 1 299 -13 555 257 127 84 chr1 29379278 29379366 -252814298 + MER34 LTR ERV1 383 513 -29 602 246 0 0 chr1 29379403 29379517 -252814147 - MIR SINE MIR -141 121 8 880 188 0 0 chr1 29379540 29379694 -252813970 + FRAM SINE Alu 1 153 -23 1500 115 69 58 chr1 29379709 29379970 -252813694 + AluSx SINE Alu 49 312 0 2571 44 0 3 chr1 29380041 29380402 -252813262 - AluY SINE Alu 0 311 1 971 126 0 7 chr1 29380410 29380545 -252813119 - AluJo SINE Alu -178 134 1 21 89 0 0 chr1 29380632 29380688 -252812976 + AT_rich Low_complexity Low_complexity 1 56 0 228 109 22 22 chr1 29381016 29381062 -252812602 - MER92B LTR ERV1 0 636 591 2332 91 0 10 chr1 29381066 29381364 -252812300 - AluSx SINE Alu -17 295 1 764 203 32 6 chr1 29381371 29381529 -252812135 - AluJ SINE Alu -16 296 135 2420 194 70 20 chr1 29381566 29382127 -252811537 - MER92B LTR ERV1 -47 589 1 683 199 8 0 chr1 29382156 29382287 -252811377 - AluJ SINE Alu -170 132 1 2684 70 0 0 chr1 29382426 29382738 -252810926 + AluSx SINE Alu 1 312 0 273 166 5 8 chr1 29382743 29382960 -252810704 + AluJo SINE Alu 4 296 -6 598 263 89 58 chr1 29382970 29383331 -252810333 - L1ME LINE L1 -531 5631 5260 200 250 83 0 chr1 29383436 29383496 -252810168 - MIR SINE MIR -70 192 128 820 272 58 8 chr1 29384728 29384971 -252808693 - MIR SINE MIR -2 260 6 2149 136 7 3 chr1 29385165 29385475 -252808189 + AluJb SINE Alu 1 311 -1 1595 138 32 16 chr1 29385568 29385815 -252807849 + AluSx SINE Alu 50 300 -12 1856 136 21 4 chr1 29385968 29386275 -252807389 - AluJb SINE Alu 0 312 1 2560 68 0 0 chr1 29387094 29387390 -252806274 - AluY SINE Alu -15 296 1 2168 113 0 31 chr1 29387403 29387721 -252805943 - AluY SINE Alu -3 308 1 305 91 0 0 chr1 29387759 29387803 -252805861 + AluSg/x SINE Alu 192 235 -67 299 228 30 40 chr1 29387845 29387946 -252805718 - MIR SINE MIR -64 144 45 2300 87 28 0 chr1 29388201 29388487 -252805177 + AluSx SINE Alu 1 294 -18 1894 167 10 3 chr1 29388582 29388888 -252804776 - AluJo SINE Alu -4 308 1 541 316 17 17 chr1 29389086 29389263 -252804401 + MIR SINE MIR 42 218 -44 1045 176 12 0 chr1 29390137 29390307 -252803357 + AluJo SINE Alu 122 293 -19 2284 94 37 10 chr1 29390313 29390611 -252803053 + AluSc SINE Alu 2 307 -2 238 267 218 2 chr1 29391087 29391198 -252802466 + MIR SINE MIR 35 164 -59 214 314 0 0 chr1 29391178 29391229 -252802435 - L2 LINE L2 -83 3189 3139 * 642 160 56 0 chr1 29391863 29391988 -252801676 + AluJo/FLAM SINE Alu 2 133 -179 2279 107 0 13 chr1 29391990 29392124 -252801540 + AluSx SINE Alu 3 137 -175 2275 102 0 3 chr1 29392124 29392417 -252801247 + AluSg SINE Alu 1 292 -18 2279 107 0 13 chr1 29392417 29392592 -252801072 + AluSx SINE Alu 137 308 -4 215 273 66 41 chr1 29394466 29394587 -252799077 - MIR SINE MIR -118 144 21 * 452 285 63 6 chr1 29394548 29394706 -252798958 + MIR SINE MIR 31 197 -65 380 278 20 10 chr1 29395416 29395533 -252798131 + MIR SINE MIR 17 135 -73 326 265 122 0 chr1 29395536 29395634 -252798030 - L2 LINE L2 -272 3041 2932 914 189 65 5 chr1 29395635 29395820 -252797844 - MLT1A1 LTR MaLR 0 365 170 2502 71 0 3 chr1 29395971 29396267 -252797397 + AluSp SINE Alu 1 295 -18 2490 74 0 0 chr1 29396270 29396566 -252797098 + AluY SINE Alu 1 296 -15 280 223 98 54 chr1 29396866 29396978 -252796686 - MIR3 SINE MIR -23 185 69 2291 89 20 10 chr1 29397115 29397287 -252796377 - AluSq SINE Alu -8 305 127 2498 66 20 0 chr1 29397287 29397588 -252796076 - AluY SINE Alu -4 307 1 2291 89 20 10 chr1 29397588 29397717 -252795947 - AluSq SINE Alu -186 127 1 267 218 218 0 chr1 29397728 29397806 -252795858 - MIR SINE MIR -13 249 155 2506 77 0 0 chr1 29398252 29398552 -252795112 + AluY SINE Alu 1 300 -11 278 346 45 0 chr1 29398983 29399116 -252794548 - MIR SINE MIR -1 261 123 2088 123 3 3 chr1 29399123 29399432 -252794232 - AluSx SINE Alu 0 309 1 230 330 136 0 chr1 29399454 29399557 -252794107 - L2 LINE L2 -17 3296 3180 2120 72 0 0 chr1 29400068 29400319 -252793345 - AluY SINE Alu -7 304 54 2205 118 10 7 chr1 29400321 29400626 -252793038 - AluSq SINE Alu -7 306 1 1095 153 83 147 chr1 29401750 29401895 -252791769 - AluJo SINE Alu -7 295 179 2152 113 0 3 chr1 29401895 29402197 -252791467 - AluSq SINE Alu -12 301 1 1095 153 83 147 chr1 29402197 29402365 -252791299 - AluJo SINE Alu -123 179 2 1205 162 43 5 chr1 29402377 29402587 -252791077 - AluJb SINE Alu -10 302 85 2114 119 18 6 chr1 29402628 29402971 -252790693 + MER47A DNA MER2_type 20 366 0 223 309 95 16 chr1 29403193 29403319 -252790345 - L2 LINE L2 -212 3060 2925 699 197 0 8 chr1 29403365 29403482 -252790182 + FLAM_C SINE Alu 2 117 -26 26 30 0 0 chr1 29403487 29403520 -252790144 + AT_rich Low_complexity Low_complexity 1 33 0 2216 104 0 0 chr1 29403520 29403817 -252789847 + AluSc SINE Alu 1 297 -12 181 204 45 0 chr1 29403846 29403890 -252789774 - MIR SINE MIR -48 214 169 779 177 0 0 chr1 29404939 29405063 -252788601 - FLAM_A SINE Alu -6 127 4 586 246 62 26 chr1 29405066 29405235 -252788429 - MER113 DNA MER1_type? -205 316 155 2079 103 0 10 chr1 29405235 29405525 -252788139 + AluSc SINE Alu 1 287 -22 586 246 62 26 chr1 29405525 29405550 -252788114 - MER113 DNA MER1_type? -366 155 132 2116 101 10 0 chr1 29405550 29405838 -252787826 + AluSx SINE Alu 1 291 -21 586 246 62 26 chr1 29405838 29405914 -252787750 - MER113 DNA MER1_type? -389 132 35 2163 90 7 0 chr1 29406087 29406377 -252787287 - AluSg SINE Alu -18 292 1 2087 112 0 7 chr1 29407613 29407918 -252785746 + AluSq SINE Alu 1 303 -10 829 168 14 7 chr1 29408184 29408327 -252785337 + FRAM SINE Alu 21 164 -12 544 278 87 50 chr1 29408329 29408628 -252785036 - L1ME LINE L1 -302 5819 5510 1493 143 103 0 chr1 29409616 29409868 -252783796 - AluJb SINE Alu -20 292 15 2818 12 0 3 chr1 29410062 29410381 -252783283 + AluYb8 SINE Alu 1 318 0 863 129 30 0 chr1 29410436 29410568 -252783096 - AluJo SINE Alu -176 136 1 1994 123 0 13 chr1 29410800 29411101 -252782563 - AluSg SINE Alu -13 297 1 2321 82 0 19 chr1 29411113 29411430 -252782234 - AluY SINE Alu 0 311 1 2100 127 3 3 chr1 29411847 29412155 -252781509 - AluSx SINE Alu -4 308 1 1280 109 0 0 chr1 29412231 29412406 -252781258 - AluSq SINE Alu -5 308 134 1955 132 3 13 chr1 29412406 29412716 -252780948 - AluSq SINE Alu -6 307 1 2045 103 21 0 chr1 29412898 29413189 -252780475 + AluSx SINE Alu 1 297 -15 2081 118 3 3 chr1 29413201 29413497 -252780167 + AluSx SINE Alu 1 296 -16 383 271 119 40 chr1 29413498 29413649 -252780015 + MIR SINE MIR 25 187 -75 225 0 0 0 chr1 29413799 29413824 -252779840 + (GA)n Simple_repeat Simple_repeat 2 26 0 825 151 0 0 chr1 29414264 29414383 -252779281 + FLAM_C SINE Alu 2 120 -23 2076 92 0 10 chr1 29414387 29414679 -252778985 - AluY SINE Alu -18 293 5 2199 56 0 11 chr1 29414682 29415007 -252778657 - AluY SINE Alu 0 322 1 2045 128 3 3 chr1 29415007 29415313 -252778351 - AluSx SINE Alu -6 306 1 1817 132 28 60 chr1 29415491 29415810 -252777854 + AluJb SINE Alu 3 311 -1 555 16 0 0 chr1 29415818 29415882 -252777782 + (GA)n Simple_repeat Simple_repeat 1 64 0 1445 137 116 21 chr1 29416579 29416864 -252776800 + AluJb SINE Alu 1 312 0 2203 85 0 7 chr1 29416866 29417161 -252776503 + AluSg SINE Alu 1 293 -17 2588 32 3 0 chr1 29417163 29417473 -252776191 + AluY SINE Alu 1 311 0 1097 130 27 0 chr1 29417476 29417661 -252776003 + AluJo SINE Alu 117 306 -6 2202 84 3 7 chr1 29417663 29417959 -252775705 + AluSx SINE Alu 3 297 -15 385 250 154 22 chr1 29417991 29418127 -252775537 - MIR SINE MIR -80 182 29 2249 66 0 23 chr1 29418132 29418435 -252775229 - AluY SINE Alu -15 296 1 400 244 11 0 chr1 29418465 29418555 -252775109 - MIR3 SINE MIR -49 159 69 21 0 0 0 chr1 29418640 29418661 -252775003 + GC_rich Low_complexity Low_complexity 1 21 0 315 0 0 0 chr1 29419765 29419800 -252773864 + (CA)n Simple_repeat Simple_repeat 1 35 0 266 324 99 14 chr1 29421447 29421589 -252772075 - MIR SINE MIR -35 227 74 921 126 0 22 chr1 29422251 29422386 -252771278 - FLAM_C SINE Alu -1 132 1 1717 169 30 7 chr1 29422963 29423265 -252770399 - AluJb SINE Alu -3 309 1 2268 92 0 0 chr1 29423309 29423612 -252770052 + AluY SINE Alu 1 303 -8 359 211 316 13 chr1 29423657 29423809 -252769855 + MIR SINE MIR 31 228 -34 2117 116 0 31 chr1 29423813 29424131 -252769533 - AluSq SINE Alu -5 308 1 1759 80 27 0 chr1 29424384 29424608 -252769056 + MER30 DNA MER1_type 1 230 0 376 303 114 0 chr1 29425221 29425353 -252768311 + L3b LINE CR1 1240 1386 -197 25 0 0 0 chr1 29425491 29425516 -252768148 + AT_rich Low_complexity Low_complexity 1 25 0 344 104 0 0 chr1 29425519 29425567 -252768097 - MER66A LTR ERV1 -144 334 287 608 264 81 0 chr1 29425680 29425854 -252767810 + MIR3 SINE MIR 20 207 -1 357 265 92 24 chr1 29425912 29426066 -252767598 + MIR SINE MIR 23 192 -67 180 152 0 0 chr1 29429259 29429292 -252764372 + (CA)n Simple_repeat Simple_repeat 1 33 0 418 292 50 12 chr1 29431660 29431829 -252761835 + MIR SINE MIR 23 194 -62 250 237 92 13 chr1 29431861 29431937 -252761727 - MER103 DNA DNA -77 89 8 186 255 0 0 chr1 29432427 29432474 -252761190 + MIR SINE MIR 45 91 -171 591 296 40 74 chr1 29433969 29434320 -252759344 + L2 LINE L2 2921 3259 -13 2112 107 3 3 chr1 29435802 29436100 -252757564 - AluSx SINE Alu -14 298 1 693 281 55 85 chr1 29436110 29436285 -252757379 + L1MC5 LINE L1 7312 7491 -470 942 205 0 0 chr1 29436285 29436451 -252757213 + FRAM SINE Alu 1 166 0 693 281 55 85 chr1 29436451 29436619 -252757045 + L1MC5 LINE L1 7491 7663 -298 1772 155 3 23 chr1 29436619 29436923 -252756741 + AluJo SINE Alu 1 298 -14 693 281 55 85 chr1 29436923 29436936 -252756728 + L1MC5 LINE L1 7663 7675 -286 2284 81 0 0 chr1 29436936 29437231 -252756433 + AluY SINE Alu 1 295 -16 693 281 55 85 chr1 29437231 29437506 -252756158 + L1MC5 LINE L1 7675 7926 -35 2401 56 20 3 chr1 29437510 29437816 -252755848 + AluY SINE Alu 1 311 0 238 174 0 61 chr1 29437817 29437915 -252755749 - L1MC4 LINE L1 -1337 6705 6614 344 256 21 10 chr1 29437917 29438013 -252755651 + L1MC3 LINE L1 6571 6646 -1139 * 345 182 45 0 chr1 29437954 29438020 -252755644 - L1MCa LINE L1 -4362 2064 1996 708 191 58 12 chr1 29438028 29438201 -252755463 + L1ME3A LINE L1 4477 4657 -1489 992 179 0 0 chr1 29438203 29438371 -252755293 + FRAM SINE Alu 1 166 -10 328 313 0 0 chr1 29438381 29438464 -252755200 + L1ME3A LINE L1 5119 5201 -945 2266 100 7 0 chr1 29438498 29438808 -252754856 + AluSx SINE Alu 1 312 0 2670 242 74 43 chr1 29438809 29438906 -252754758 + L1ME3A LINE L1 5191 5284 -886 2196 103 0 13 chr1 29438906 29439217 -252754447 + AluSx SINE Alu 1 307 -5 2670 242 74 43 chr1 29439217 29439792 -252753872 + L1ME3A LINE L1 5284 5840 -330 2219 106 3 0 chr1 29439792 29440094 -252753570 + AluSx SINE Alu 1 303 -9 2670 242 74 43 chr1 29440094 29440331 -252753333 + L1ME3A LINE L1 5840 6121 -49 2092 113 0 3 chr1 29440331 29440624 -252753040 - AluSx SINE Alu -20 292 1 2670 242 74 43 chr1 29440624 29440676 -252752988 + L1ME3A LINE L1 6121 6170 0 2226 109 6 0 chr1 29440690 29441001 -252752663 + AluSq SINE Alu 1 313 0 376 215 0 13 chr1 29441274 29441353 -252752311 - L2 LINE L2 -9 3304 3227 395 297 22 87 chr1 29441470 29441655 -252752009 + MIR SINE MIR 14 186 -22 512 247 120 13 chr1 29441692 29441842 -252751822 + MIR SINE MIR 97 262 0 711 186 0 0 chr1 29441855 29441968 -252751696 + AluJo/FLAM SINE Alu 2 114 -198 2213 104 3 3 chr1 29441968 29442277 -252751387 - AluSg SINE Alu -1 309 1 382 235 39 10 chr1 29442278 29442380 -252751284 + MIR SINE MIR 118 222 -40 336 333 0 32 chr1 29442569 29442695 -252750969 + MIR SINE MIR 22 143 -119 861 142 0 58 chr1 29442697 29442852 -252750812 + AluJo SINE Alu 1 146 -166 2051 99 7 14 chr1 29442852 29443135 -252750529 + AluSq SINE Alu 1 281 -32 304 213 49 0 chr1 29443149 29443210 -252750454 + AluSg/x SINE Alu 129 192 -110 562 187 0 28 chr1 29443280 29443387 -252750277 + FRAM SINE Alu 67 170 -6 2212 87 7 3 chr1 29443389 29443687 -252749977 + AluSx SINE Alu 1 299 -13 275 342 34 17 chr1 29443688 29443805 -252749859 + MIR SINE MIR 144 262 0 287 250 30 20 chr1 29444288 29444388 -252749276 - MER117 DNA MER1_type -96 101 1 247 214 143 12 chr1 29444595 29444679 -252748985 - L2 LINE L2 -1 3312 3218 189 238 262 0 chr1 29444685 29444769 -252748895 + L2 LINE L2 3207 3312 -1 181 308 19 0 chr1 29445271 29445323 -252748341 - L2 LINE L2 -20 3293 3241 381 309 48 18 chr1 29445401 29445566 -252748098 + MIR SINE MIR 29 198 -64 832 153 0 36 chr1 29445689 29445826 -252747838 + FLAM_C SINE Alu 2 133 -10 2181 106 10 3 chr1 29445836 29446147 -252747517 + AluSp SINE Alu 1 313 0 315 270 122 57 chr1 29446335 29446351 -252747313 + L1MC5 LINE L1 7479 7493 -468 2165 105 0 0 chr1 29446351 29446670 -252746994 + AluSx SINE Alu 1 319 0 315 270 122 57 chr1 29446670 29446870 -252746794 + L1MC5 LINE L1 7493 7722 -239 2223 68 0 17 chr1 29446870 29447164 -252746500 - AluY SINE Alu -22 289 1 315 270 122 57 chr1 29447164 29447241 -252746423 + L1MC5 LINE L1 7722 7793 -168 2453 80 0 0 chr1 29447263 29447574 -252746090 + AluY SINE Alu 1 311 0 405 248 119 0 chr1 29448087 29448188 -252745476 + MER81 DNA DNA 2 114 0 2277 88 0 0 chr1 29448409 29448705 -252744959 - AluSc SINE Alu -8 301 6 337 296 37 0 chr1 29449764 29449872 -252743792 + MIR SINE MIR 116 227 -35 228 221 16 11 chr1 29450577 29450726 -252742938 + L2 LINE L2 2892 3081 -232 1108 196 93 45 chr1 29450739 29451071 -252742593 + L2 LINE L2 2966 3313 0 695 242 130 9 chr1 29451072 29451287 -252742377 + MIR SINE MIR 3 243 -19 208 263 162 50 chr1 29451339 29451438 -252742226 + L2 LINE L2 3156 3265 -48 304 250 115 0 chr1 29451894 29451998 -252741666 - MER117 DNA MER1_type -32 165 50 189 107 0 0 chr1 29452033 29452061 -252741603 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 530 308 81 31 chr1 29452062 29452322 -252741342 - L2 LINE L2 -10 3262 2990 861 297 185 27 chr1 29452579 29453049 -252740615 + L2 LINE L2 2636 3214 -99 2100 104 3 7 chr1 29453049 29453375 -252740289 + AluSq SINE Alu 1 313 0 861 297 185 27 chr1 29453375 29453481 -252740183 + L2 LINE L2 3214 3302 -11 266 211 0 0 chr1 29453492 29453544 -252740120 - MIR SINE MIR 0 262 211 761 291 66 0 chr1 29453668 29453881 -252739783 - MIR SINE MIR -31 231 5 566 291 155 7 chr1 29454400 29454671 -252738993 - L2 LINE L2 0 3313 3003 217 253 137 0 chr1 29454781 29454876 -252738788 - L2 LINE L2 -599 2715 2608 801 231 71 5 chr1 29455644 29455856 -252737808 - MIR SINE MIR -32 230 5 180 111 0 0 chr1 29457155 29457182 -252736482 + (CTG)n Simple_repeat Simple_repeat 2 28 0 237 125 29 77 chr1 29457185 29457289 -252736375 + (CGGGG)n Simple_repeat Simple_repeat 3 101 0 27 49 0 0 chr1 29457333 29457374 -252736290 + GC_rich Low_complexity Low_complexity 1 41 0 206 157 43 29 chr1 29457452 29457522 -252736142 + (CCG)n Simple_repeat Simple_repeat 2 72 0 235 270 16 16 chr1 29457674 29457737 -252735927 - L2 LINE L2 -18 3254 3192 2058 187 59 119 chr1 29458034 29458098 -252735566 - MLT1E LTR MaLR -1 592 526 2172 78 20 3 chr1 29458098 29458391 -252735273 + AluSc SINE Alu 1 298 -11 2058 187 59 119 chr1 29458391 29458956 -252734708 - MLT1E LTR MaLR -67 526 1 2318 103 0 0 chr1 29459460 29459770 -252733894 - AluSq SINE Alu -3 310 1 1847 152 10 7 chr1 29459919 29460221 -252733443 + AluJo SINE Alu 1 303 -9 2133 85 23 23 chr1 29460221 29460526 -252733138 + AluSg SINE Alu 1 306 -4 625 200 0 0 chr1 29460621 29460731 -252732933 + AluJ SINE Alu 2 111 -201 1034 276 109 6 chr1 29460856 29461204 -252732460 + MLT1J2 LTR MaLR 67 450 0 418 132 40 0 chr1 29461493 29461569 -252732095 - LTR50 LTR ERVL 0 795 717 2164 114 0 3 chr1 29461569 29461868 -252731796 + AluSg SINE Alu 1 298 -12 1340 138 0 50 chr1 29461875 29462114 -252731550 + AluJb SINE Alu 86 312 0 28 48 0 0 chr1 29462146 29462188 -252731476 + AT_rich Low_complexity Low_complexity 1 42 0 1165 159 0 66 chr1 29462193 29462340 -252731324 + AluJo SINE Alu 1 129 -183 2401 71 0 0 chr1 29462340 29462636 -252731028 + AluY SINE Alu 1 296 -15 1165 159 0 66 chr1 29462636 29462714 -252730950 + AluJo SINE Alu 129 211 -101 521 152 48 0 chr1 29462726 29462831 -252730833 - LTR50 LTR ERVL -144 651 542 876 200 0 6 chr1 29462868 29463038 -252730626 - FAM SINE Alu -9 40 1 847 219 157 7 chr1 29463047 29463369 -252730295 - LTR50 LTR ERVL -389 406 18 1842 137 31 0 chr1 29463424 29463716 -252729948 - AluSg SINE Alu -9 301 1 1798 135 0 49 chr1 29463849 29464007 -252729657 - AluSx SINE Alu -23 289 125 2078 92 14 0 chr1 29464007 29464288 -252729376 - AluSg SINE Alu -15 295 11 2228 94 3 0 chr1 29464296 29464594 -252729070 - AluSx SINE Alu -13 299 1 1798 135 0 49 chr1 29464594 29464730 -252728934 - AluSx SINE Alu -194 118 1 2709 94 10 108 chr1 29464789 29465471 -252728193 - SVA Other Other -339 1047 433 2624 84 23 77 chr1 29465488 29466657 -252727007 - SVA Other Other -518 868 393 305 289 19 48 chr1 29467002 29467106 -252726558 - L1MC4 LINE L1 -1334 6708 6608 890 130 30 0 chr1 29467106 29467237 -252726427 - AluJb SINE Alu -177 135 1 2069 103 21 0 chr1 29467249 29467539 -252726125 - AluSx SINE Alu -16 296 1 313 369 0 0 chr1 29467680 29467802 -252725862 - HERVL LTR ERVL -2961 2693 2572 270 179 0 0 chr1 29467802 29467858 -252725806 + C-rich Low_complexity Low_complexity 1 56 0 358 204 20 10 chr1 29467859 29467957 -252725707 + CT-rich Low_complexity Low_complexity 4 102 0 2219 102 0 16 chr1 29467960 29468274 -252725390 - AluSg SINE Alu -1 309 1 2064 89 45 0 chr1 29468274 29468566 -252725098 - AluSp SINE Alu -6 307 3 756 253 11 5 chr1 29468652 29468708 -252724956 - HERVL LTR ERVL -3250 2514 2460 1876 154 3 0 chr1 29468708 29469000 -252724664 - AluJo SINE Alu -19 293 1 1798 154 0 17 chr1 29469002 29469294 -252724370 - 7SLRNA srpRNA srpRNA -10 310 24 756 253 11 5 chr1 29469294 29469424 -252724240 - HERVL LTR ERVL -3304 2460 2324 1244 169 143 90 chr1 29469426 29469657 -252724007 - MLT1B LTR MaLR -1 389 172 2188 110 0 16 chr1 29469657 29469834 -252723830 - AluSq SINE Alu 0 313 135 188 35 35 0 chr1 29469834 29469863 -252723801 + (TA)n Simple_repeat Simple_repeat 1 30 0 2260 78 0 0 chr1 29469864 29470157 -252723507 - AluY SINE Alu -18 293 1 2188 110 0 16 chr1 29470157 29470295 -252723369 - AluSq SINE Alu -177 136 1 1244 169 143 90 chr1 29470295 29470435 -252723229 - MLT1B LTR MaLR -218 172 1 1452 275 11 7 chr1 29470436 29470964 -252722700 - HERVL LTR ERVL -3438 2326 1705 1449 356 27 36 chr1 29470993 29471371 -252722293 - HERVL LTR ERVL -4174 1590 1210 1663 156 32 41 chr1 29471371 29471516 -252722148 + AluJb SINE Alu 1 146 -166 2154 107 7 0 chr1 29471516 29471816 -252721848 + AluSq SINE Alu 1 302 -11 1663 156 32 41 chr1 29471816 29471985 -252721679 + AluJb SINE Alu 146 312 0 1449 356 27 36 chr1 29471985 29472430 -252721234 - HERVL LTR ERVL -4554 1210 775 2413 228 161 10 chr1 29473060 29473571 -252720093 - LTR50 LTR ERVL 0 795 152 2232 88 0 3 chr1 29473571 29473865 -252719799 + AluSq SINE Alu 1 293 -20 2413 228 161 10 chr1 29473865 29474043 -252719621 - LTR50 LTR ERVL -643 152 2 2417 71 0 0 chr1 29474053 29474363 -252719301 - AluSg SINE Alu 0 310 1 1886 141 3 25 chr1 29474541 29474860 -252718804 + AluJb SINE Alu 1 312 0 1943 152 0 7 chr1 29474892 29475194 -252718470 - AluSx SINE Alu -12 300 1 1109 151 0 0 chr1 29475257 29475423 -252718241 + AluJb SINE Alu 144 309 -3 4372 158 41 24 chr1 29475423 29476104 -252717560 + L1MB3 LINE L1 5027 5695 -488 2402 62 0 31 chr1 29476104 29476424 -252717240 + AluY SINE Alu 1 310 -1 4372 158 41 24 chr1 29476424 29476655 -252717009 + L1MB3 LINE L1 5695 5921 -262 2078 122 0 3 chr1 29476655 29476951 -252716713 + AluSx SINE Alu 1 295 -17 4372 158 41 24 chr1 29476951 29477059 -252716605 + L1MB3 LINE L1 5921 6168 -15 804 194 0 70 chr1 29477251 29477437 -252716227 + FRAM SINE Alu 1 172 -4 2043 98 21 7 chr1 29477496 29477809 -252715855 + AluSg SINE Alu 1 310 0 1815 145 3 60 chr1 29477837 29478168 -252715496 + AluJo SINE Alu 1 312 0 535 189 72 85 chr1 29478555 29478602 -252715062 + MLT1J1 LTR MaLR 31 77 -369 891 188 39 0 chr1 29478602 29478783 -252714881 + MER53 DNA DNA 1 188 -1 535 189 72 85 chr1 29478783 29478888 -252714776 + MLT1J1 LTR MaLR 77 181 -265 2323 60 3 7 chr1 29478895 29479193 -252714471 + AluY SINE Alu 1 297 -14 578 0 0 47 chr1 29479196 29479282 -252714382 + (TCTCCC)n Simple_repeat Simple_repeat 2 83 0 6024 74 25 40 chr1 29479282 29481239 -252712425 + SVA Other Other 53 1386 0 556 278 82 5 chr1 29481258 29481452 -252712212 + MLT1J2 LTR MaLR 240 448 -2 1926 147 7 16 chr1 29481518 29481825 -252711839 - AluJb SINE Alu -8 304 1 431 241 213 0 chr1 29481890 29482031 -252711633 - MIR SINE MIR -1 261 91 2505 59 0 0 chr1 29482033 29482340 -252711324 - AluY SINE Alu -4 307 1 251 306 204 21 chr1 29482363 29482549 -252711115 + L2 LINE L2 2148 2367 -947 601 179 22 120 chr1 29482553 29482737 -252710927 - MIR SINE MIR -40 222 57 2479 52 0 3 chr1 29483038 29483343 -252710321 + AluSg SINE Alu 1 304 -6 283 229 60 169 chr1 29485128 29485329 -252708335 - MIR3 SINE MIR -11 197 19 27 29 0 0 chr1 29485340 29485374 -252708290 + AT_rich Low_complexity Low_complexity 1 34 0 1958 143 16 0 chr1 29485394 29485701 -252707963 - AluSx SINE Alu 0 312 1 208 321 46 113 chr1 29487445 29487664 -252706000 + L2 LINE L2 2887 3119 -153 2426 76 0 0 chr1 29487664 29487966 -252705698 + AluY SINE Alu 2 303 -8 2076 111 0 7 chr1 29487971 29488299 -252705365 + AluSx SINE Alu 1 312 0 208 321 46 113 chr1 29488299 29488395 -252705269 + L2 LINE L2 3123 3176 -96 2260 105 0 0 chr1 29488395 29488700 -252704964 - AluSg1 SINE Alu -4 305 1 208 321 46 113 chr1 29488700 29488791 -252704873 + L2 LINE L2 3176 3272 0 207 247 55 0 chr1 29490022 29490095 -252703569 - L2 LINE L2 -843 2471 2395 808 141 16 0 chr1 29490101 29490222 -252703442 + FLAM_C SINE Alu 14 136 -7 1798 151 0 24 chr1 29490224 29490516 -252703148 + AluJo SINE Alu 3 287 -25 1970 247 172 2 chr1 29490534 29491169 -252702495 - L2 LINE L2 -1171 2143 1401 229 320 0 0 chr1 29491195 29491273 -252702391 + L2 LINE L2 1316 1393 -1921 * 582 268 58 11 chr1 29491272 29491462 -252702202 - L2 LINE L2 -2592 722 524 2607 38 0 0 chr1 29491504 29491818 -252701846 + AluYb8 SINE Alu 1 314 -4 921 136 45 7 chr1 29491818 29491972 -252701692 + AluSg/x SINE Alu 134 293 -19 259 328 104 16 chr1 29491972 29492097 -252701567 + L2 LINE L2 3136 3271 -1 232 137 176 0 chr1 29492576 29492627 -252701037 - L2 LINE L2 0 3272 3213 567 269 26 47 chr1 29492932 29493125 -252700539 + MIR3 SINE MIR 20 208 0 276 300 136 36 chr1 29493646 29493786 -252699878 + MIR SINE MIR 35 188 -74 194 229 240 21 chr1 29494498 29494594 -252699070 + L2 LINE L2 3196 3312 -1 185 281 45 45 chr1 29495279 29495368 -252698296 - MIR3 SINE MIR -9 199 111 366 284 0 0 chr1 29495377 29495465 -252698199 - MIR SINE MIR -90 172 85 785 269 119 31 chr1 29498207 29498365 -252695299 + L2 LINE L2 2922 3065 -248 980 128 0 0 chr1 29498365 29498498 -252695166 - FLAM_C SINE Alu 0 133 1 785 269 119 31 chr1 29498498 29498699 -252694965 + L2 LINE L2 3065 3313 0 543 261 99 0 chr1 29498702 29498844 -252694820 - MIR3 SINE MIR -49 159 4 259 272 206 11 chr1 29498993 29499085 -252694579 - L2 LINE L2 -1 3271 3162 190 219 98 0 chr1 29499108 29499149 -252694515 + MIR SINE MIR 216 260 -2 276 252 81 54 chr1 29500578 29500689 -252692975 + MIR SINE MIR 72 185 -77 1170 258 187 37 chr1 29500925 29501823 -252691841 - L2 LINE L2 -6 3307 2242 204 67 0 0 chr1 29502941 29502971 -252690693 + (T)n Simple_repeat Simple_repeat 1 30 0 1675 149 26 78 chr1 29505816 29505853 -252687811 + AluJo SINE Alu 1 38 -264 1975 110 3 95 chr1 29505853 29506043 -252687621 - AluSx SINE Alu -16 296 147 2320 109 0 3 chr1 29506043 29506345 -252687319 - AluSx SINE Alu -11 301 1 1975 110 3 95 chr1 29506345 29506480 -252687184 - AluSx SINE Alu -165 147 1 1675 149 26 78 chr1 29506480 29506599 -252687065 + AluJo SINE Alu 38 162 -140 1704 176 13 36 chr1 29506599 29506900 -252686764 + AluJb SINE Alu 1 294 -18 1675 149 26 78 chr1 29506900 29507050 -252686614 + AluJo SINE Alu 162 292 -10 181 255 235 20 chr1 29507075 29507173 -252686491 + MIR SINE MIR 134 252 -10 296 273 186 0 chr1 29507240 29507401 -252686263 + MIR SINE MIR 70 260 -2 2447 54 14 0 chr1 29507558 29507854 -252685810 + AluY SINE Alu 1 300 -11 690 126 134 17 chr1 29507995 29508114 -252685550 + FLAM_C SINE Alu 1 133 0 216 0 0 0 chr1 29510416 29510440 -252683224 + (CTG)n Simple_repeat Simple_repeat 3 26 0 2301 101 0 26 chr1 29513347 29513655 -252680009 - AluSx SINE Alu -12 300 1 2135 123 3 0 chr1 29513907 29514199 -252679465 - AluSx SINE Alu -19 293 1 214 276 82 31 chr1 29514502 29514600 -252679064 - L2 LINE L2 -182 3090 2988 446 271 59 35 chr1 29515673 29515843 -252677821 - MIR SINE MIR -87 175 2 384 253 70 57 chr1 29516575 29516733 -252676931 - MIR SINE MIR -91 171 12 962 206 0 6 chr1 29518064 29518239 -252675425 - FRAM SINE Alu -5 171 1 2353 106 3 0 chr1 29518247 29518548 -252675116 - AluSp SINE Alu -11 302 1 2496 61 0 7 chr1 29518629 29518926 -252674738 - AluY SINE Alu -16 295 1 2161 97 17 3 chr1 29518928 29519216 -252674448 - AluSq SINE Alu -21 292 1 1181 162 0 75 chr1 29519815 29519866 -252673798 + AluJb SINE Alu 87 140 -172 1754 156 19 0 chr1 29519866 29520135 -252673529 + AluSx SINE Alu 1 274 -38 182 61 0 30 chr1 29520141 29520174 -252673490 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 1181 162 0 75 chr1 29520174 29520343 -252673321 + AluJb SINE Alu 145 297 -15 2111 100 14 0 chr1 29520359 29520640 -252673024 - AluSg SINE Alu -25 285 1 27 0 0 0 chr1 29521492 29521519 -252672145 + AT_rich Low_complexity Low_complexity 1 27 0 211 250 97 14 chr1 29521572 29521644 -252672020 - MIR SINE MIR -115 147 70 730 151 14 22 chr1 29522391 29522530 -252671134 + L1MA5A LINE L1 6156 6293 -4 21 0 0 0 chr1 29523412 29523433 -252670231 + AT_rich Low_complexity Low_complexity 1 21 0 2366 65 10 3 chr1 29523433 29523725 -252669939 - AluSp SINE Alu -19 294 1 494 228 59 7 chr1 29523752 29523888 -252669776 - MER58B DNA MER1_type -8 333 191 1893 164 0 16 chr1 29524623 29524940 -252668724 + AluJb SINE Alu 1 312 0 1442 161 12 116 chr1 29525492 29525828 -252667836 - AluJb SINE Alu -1 301 1 1826 112 109 4 chr1 29526193 29526460 -252667204 + AluSg SINE Alu 1 295 -15 2021 76 8 11 chr1 29526634 29526898 -252666766 - AluY SINE Alu -3 308 46 1081 101 0 0 chr1 29526899 29527038 -252666626 - AluSg/x SINE Alu -13 297 159 2505 74 0 0 chr1 29527129 29527428 -252666236 + AluY SINE Alu 1 299 -12 2292 102 0 29 chr1 29527544 29527857 -252665807 - AluSx SINE Alu -8 304 1 955 133 0 7 chr1 29527858 29528001 -252665663 - AluJo SINE Alu -170 142 1 202 83 0 42 chr1 29528038 29528086 -252665578 + (CAAAAA)n Simple_repeat Simple_repeat 4 49 0 2507 75 0 0 chr1 29528088 29528395 -252665269 + AluY SINE Alu 1 307 -4 399 311 115 57 chr1 29528904 29528999 -252664665 - MIR SINE MIR -4 258 170 1750 153 51 10 chr1 29528999 29529294 -252664370 - AluJb SINE Alu -5 307 1 399 311 115 57 chr1 29529294 29529442 -252664222 - MIR SINE MIR -92 170 1 356 261 101 29 chr1 29529455 29529593 -252664071 + MIR3 SINE MIR 13 160 -48 2067 83 0 4 chr1 29530024 29530277 -252663387 + AluY SINE Alu 1 252 -59 460 219 171 0 chr1 29532507 29532630 -252661034 - MIR SINE MIR -70 192 49 2396 82 0 0 chr1 29532867 29533158 -252660506 - AluSx SINE Alu -21 291 1 2506 66 0 3 chr1 29534945 29535248 -252658416 - AluY SINE Alu -9 302 1 21 0 0 0 chr1 29535259 29535280 -252658384 + AT_rich Low_complexity Low_complexity 1 21 0 245 246 49 0 chr1 29535332 29535393 -252658271 + MER102b DNA MER1_type 249 312 -29 186 43 0 0 chr1 29535502 29535525 -252658139 + (A)n Simple_repeat Simple_repeat 1 23 0 1884 144 0 23 chr1 29536265 29536570 -252657094 - AluJo SINE Alu -14 298 1 2111 105 19 32 chr1 29537061 29537376 -252656288 - AluSx SINE Alu -1 311 1 1028 119 14 0 chr1 29537376 29537519 -252656145 - AluY SINE Alu -166 145 1 2351 102 3 7 chr1 29538058 29538363 -252655301 - AluSp SINE Alu -9 304 1 347 235 66 11 chr1 29538451 29538543 -252655121 + MIR3 SINE MIR 56 154 -54 24 0 0 0 chr1 29540321 29540345 -252653319 + AT_rich Low_complexity Low_complexity 1 24 0 1632 95 22 5 chr1 29540355 29540577 -252653087 - AluSq SINE Alu -87 226 1 2244 107 7 3 chr1 29541143 29541442 -252652222 - AluSg SINE Alu -10 300 1 499 236 0 0 chr1 29541547 29541636 -252652028 - MER5A DNA MER1_type -87 102 14 276 334 161 21 chr1 29542869 29543297 -252650367 + L2 LINE L2 2007 2494 -820 273 294 84 28 chr1 29543865 29544008 -252649656 - L3 LINE CR1 -4 1573 1423 298 390 6 6 chr1 29544137 29544301 -252649363 - L2 LINE L2 -609 2705 2542 680 219 131 12 chr1 29544658 29544818 -252648846 + MER5A DNA MER1_type 10 188 -1 2254 75 12 56 chr1 29544944 29545264 -252648400 + AluSg1 SINE Alu 1 306 -3 466 97 0 0 chr1 29545272 29545334 -252648330 + Alu SINE Alu 1 62 -256 451 131 0 0 chr1 29745334 29745395 -252448269 - AluS SINE Alu -256 62 2 1782 147 3 7 chr1 29745433 29745719 -252447945 - AluJb SINE Alu -27 285 1 2231 95 0 7 chr1 29745853 29746157 -252447507 - AluSq SINE Alu -11 302 1 1320 161 10 77 chr1 29746251 29746286 -252447378 + AluJo SINE Alu 32 68 -244 2222 82 3 0 chr1 29746286 29746580 -252447084 - AluY SINE Alu -16 295 1 1320 161 10 77 chr1 29746580 29746842 -252446822 + AluJo SINE Alu 68 309 -3 841 240 19 96 chr1 29747243 29747352 -252446312 + MIR SINE MIR 13 129 -133 1931 95 78 3 chr1 29747352 29747635 -252446029 - AluSq SINE Alu -8 305 2 841 240 19 96 chr1 29747635 29747796 -252445868 + MIR SINE MIR 129 262 0 336 267 308 7 chr1 29747935 29748081 -252445583 + MIR SINE MIR 61 250 -12 246 289 252 0 chr1 29748144 29748279 -252445385 + Charlie8 DNA MER1_type 1 169 -2248 2146 71 4 0 chr1 29748279 29748560 -252445104 + AluSp SINE Alu 2 283 -30 1913 116 0 17 chr1 29748562 29748855 -252444809 + AluJb SINE Alu 1 288 -24 2232 58 0 64 chr1 29748868 29749125 -252444539 - AluY SINE Alu 0 366 136 2412 54 0 10 chr1 29749125 29749439 -252444225 - AluY SINE Alu 0 311 1 2232 58 0 64 chr1 29749439 29749564 -252444100 - AluY SINE Alu -230 136 5 1931 109 6 32 chr1 29749576 29749887 -252443777 - AluSx SINE Alu -9 303 1 415 295 11 56 chr1 29750143 29750631 -252443033 + GA-rich Low_complexity Low_complexity 1 466 0 2225 89 0 10 chr1 29750795 29751124 -252442540 + AluSx SINE Alu 1 312 0 385 333 77 13 chr1 29751176 29751410 -252442254 - L2 LINE L2 -188 3084 2836 390 319 79 55 chr1 29751962 29752081 -252441583 - L2 LINE L2 -33 3239 3124 2065 117 0 13 chr1 29752081 29752397 -252441267 + AluSx SINE Alu 1 312 0 390 319 79 55 chr1 29752397 29752531 -252441133 - L2 LINE L2 -148 3124 2980 2154 109 0 6 chr1 29752538 29752850 -252440814 + AluSx SINE Alu 1 310 -2 1072 138 0 0 chr1 29752869 29753028 -252440636 + AluSg/x SINE Alu 120 278 -34 201 39 0 0 chr1 29753028 29753054 -252440610 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 270 0 0 0 chr1 29753053 29753083 -252440581 + (CA)n Simple_repeat Simple_repeat 1 30 0 183 250 23 0 chr1 29753112 29753156 -252440508 - L2 LINE L2 -339 2974 2930 465 275 119 38 chr1 29753156 29753316 -252440348 - MIR SINE MIR -78 184 12 301 211 0 0 chr1 29753537 29753589 -252440075 - L2 LINE L2 -8 3264 3213 180 309 0 0 chr1 29753747 29753789 -252439875 - MIR SINE MIR -18 244 203 1772 126 7 40 chr1 29753813 29754115 -252439549 + AluSx SINE Alu 1 292 -20 313 248 54 94 chr1 29754122 29754271 -252439393 - MIR SINE MIR -1 261 119 2220 90 3 3 chr1 29754290 29754590 -252439074 - AluSx SINE Alu -12 300 1 30 0 0 0 chr1 29754892 29754922 -252438742 + AT_rich Low_complexity Low_complexity 1 30 0 2016 88 28 3 chr1 29754922 29755207 -252438457 + AluSq SINE Alu 1 292 -21 1667 226 58 66 chr1 29755210 29755531 -252438133 + HAL1 LINE L1 1269 1586 -921 2435 43 20 0 chr1 29755531 29755836 -252437828 + AluY SINE Alu 1 311 0 1667 226 58 66 chr1 29755836 29756062 -252437602 + HAL1 LINE L1 1586 1812 -695 2056 119 0 0 chr1 29756065 29756360 -252437304 + AluY SINE Alu 1 295 -16 2013 92 32 3 chr1 29756360 29756643 -252437021 + AluSg SINE Alu 1 291 -19 319 291 68 0 chr1 29756773 29756876 -252436788 + L1MC5 LINE L1 7487 7596 -365 2027 99 0 24 chr1 29756889 29757182 -252436482 + AluSp SINE Alu 9 294 -19 1131 182 5 5 chr1 29757248 29757457 -252436207 + AluJ SINE Alu 1 209 -103 1627 97 0 29 chr1 29757519 29757757 -252435907 - AluSp SINE Alu -19 294 64 491 149 0 0 chr1 29757757 29757831 -252435833 + AluJ SINE Alu 211 284 -28 2388 63 10 3 chr1 29757869 29758172 -252435492 + AluSp SINE Alu 1 305 -8 648 123 8 41 chr1 29758232 29758354 -252435310 - AluJb SINE Alu -178 134 17 1858 148 16 7 chr1 29758455 29758758 -252434906 - AluJo SINE Alu -6 306 1 745 161 48 0 chr1 29758758 29758882 -252434782 - AluJo/FLAM SINE Alu -172 130 1 23 33 0 0 chr1 29758888 29758918 -252434746 + AT_rich Low_complexity Low_complexity 1 30 0 666 111 0 0 chr1 29758921 29759011 -252434653 - AluSx SINE Alu -29 281 192 1014 106 0 0 chr1 29759012 29759153 -252434511 - AluSx SINE Alu -172 141 1 983 241 50 44 chr1 29759154 29759473 -252434191 - LTR38 LTR ERV1 -74 482 162 1289 84 0 17 chr1 29759477 29759655 -252434009 - AluSg/x SINE Alu -6 306 132 822 97 35 0 chr1 29759780 29759894 -252433770 - AluSg SINE Alu -190 120 3 488 193 21 135 chr1 29759897 29760027 -252433637 - LTR38 LTR ERV1 -384 172 69 2160 113 0 0 chr1 29760027 29760329 -252433335 + AluSq SINE Alu 1 302 -11 488 193 21 135 chr1 29760329 29760390 -252433274 - LTR38 LTR ERV1 -487 69 3 335 194 0 0 chr1 29760402 29760464 -252433200 - L1ME LINE L1 -303 5818 5757 2371 76 0 3 chr1 29760467 29760771 -252432893 - AluSg1 SINE Alu -6 303 1 2033 99 3 13 chr1 29760816 29761118 -252432546 + AluSq SINE Alu 1 299 -14 665 171 9 0 chr1 29761130 29761235 -252432429 + FLAM_C SINE Alu 2 107 -36 241 293 26 52 chr1 29761365 29761481 -252432183 + MARNA DNA Mariner 462 574 -12 1826 71 0 4 chr1 29761627 29761866 -252431798 + AluSx SINE Alu 64 301 -11 1668 176 0 3 chr1 29762083 29762373 -252431291 - AluSx SINE Alu -12 300 12 751 261 21 5 chr1 29762476 29762664 -252431000 - MIR SINE MIR 0 262 72 363 260 102 39 chr1 29762668 29762795 -252430869 - L1ME4a LINE L1 -255 5866 5732 951 172 0 0 chr1 29762800 29762963 -252430701 + AluJb SINE Alu 142 304 -8 274 263 20 20 chr1 29762967 29763066 -252430598 - L1ME4a LINE L1 -379 5742 5644 2294 75 0 0 chr1 29763178 29763472 -252430192 - AluY SINE Alu -17 294 1 1488 138 27 74 chr1 29763569 29763895 -252429769 + AluSx SINE Alu 1 312 0 2308 93 0 6 chr1 29763900 29764211 -252429453 + AluSx SINE Alu 1 309 -3 185 333 58 0 chr1 29764380 29764449 -252429215 - L2 LINE L2 0 3313 3241 718 254 116 13 chr1 29764522 29764746 -252428918 - MIR SINE MIR -13 249 3 466 256 167 21 chr1 29764749 29764804 -252428860 - L2 LINE L2 -86 3227 3181 2223 107 3 0 chr1 29764804 29765112 -252428552 + AluSp SINE Alu 1 309 -4 466 256 167 21 chr1 29765112 29765143 -252428521 - L2 LINE L2 -132 3181 3156 2323 63 27 0 chr1 29765143 29765444 -252428220 + AluY SINE Alu 1 309 -2 2116 130 0 0 chr1 29765450 29765758 -252427906 + AluSx SINE Alu 1 308 -4 466 256 167 21 chr1 29765758 29765897 -252427767 - L2 LINE L2 -161 3152 2960 225 248 51 34 chr1 29765901 29766018 -252427646 + L1ME LINE L1 4549 4667 -1479 1464 215 0 13 chr1 29766039 29766337 -252427327 - AluJb SINE Alu -16 296 3 568 277 115 39 chr1 29766451 29766786 -252426878 + L1ME LINE L1 4741 5049 -1121 1938 137 0 3 chr1 29766786 29767079 -252426585 + AluSx SINE Alu 2 293 -19 568 277 115 39 chr1 29767079 29767588 -252426076 + L1ME LINE L1 5049 5626 -544 2235 99 10 0 chr1 29767592 29767894 -252425770 - AluSp SINE Alu -8 305 1 1884 133 3 20 chr1 29767894 29768195 -252425469 - AluSx SINE Alu -16 296 1 2098 119 16 0 chr1 29768281 29768584 -252425080 - AluSx SINE Alu -4 308 1 1479 169 36 26 chr1 29768587 29768895 -252424769 - AluJo SINE Alu 0 312 2 557 230 35 137 chr1 29768950 29769066 -252424598 + MIR SINE MIR 10 94 -168 1728 163 0 7 chr1 29769066 29769354 -252424310 + AluJb SINE Alu 12 297 -15 557 230 35 137 chr1 29769354 29769463 -252424201 + MIR SINE MIR 94 212 -50 2182 103 3 0 chr1 29769468 29769768 -252423896 + AluSq SINE Alu 1 301 -12 1116 129 0 0 chr1 29769770 29769933 -252423731 + AluSg/x SINE Alu 130 292 -20 23 0 0 0 chr1 29769935 29769958 -252423706 + AT_rich Low_complexity Low_complexity 1 23 0 793 104 0 2 chr1 29770070 29770321 -252423343 + AluSx SINE Alu 1 299 -10 337 290 48 3 chr1 29770449 29770595 -252423069 + MIR SINE MIR 53 248 -14 588 85 181 0 chr1 29770621 29770715 -252422949 + AluSp SINE Alu 2 112 -201 2244 79 7 0 chr1 29770715 29771020 -252422644 - AluY SINE Alu -4 307 1 1243 100 9 74 chr1 29771058 29771118 -252422546 + AluSq SINE Alu 85 147 -166 2053 44 93 0 chr1 29771118 29771388 -252422276 + AluY SINE Alu 1 295 -16 1243 100 9 74 chr1 29771388 29771556 -252422108 + AluSq SINE Alu 147 298 -15 22 80 0 0 chr1 29771654 29771704 -252421960 + AT_rich Low_complexity Low_complexity 1 50 0 2090 111 3 0 chr1 29772080 29772377 -252421287 - AluSq SINE Alu -15 298 1 2250 110 0 0 chr1 29772578 29772888 -252420776 + AluSg SINE Alu 1 310 0 393 205 36 0 chr1 29773764 29773847 -252419817 - MER113 DNA MER1_type? -229 292 207 625 143 171 0 chr1 29773848 29773953 -252419711 - FLAM_C SINE Alu -19 124 2 274 237 86 0 chr1 29773954 29774047 -252419617 - MER113 DNA MER1_type? -282 239 139 2261 73 0 3 chr1 29774052 29774339 -252419325 - AluSc SINE Alu -23 286 1 2581 265 120 29 chr1 29774410 29775492 -252418172 + L2 LINE L2 1937 3129 -184 1441 195 14 3 chr1 29775492 29775774 -252417890 - AluJo SINE Alu -14 298 14 2041 126 3 0 chr1 29775875 29776168 -252417496 + AluSx SINE Alu 1 294 -18 452 196 11 200 chr1 29776168 29776286 -252417378 + L1MB2 LINE L1 5949 6088 -80 1683 172 0 23 chr1 29776286 29776588 -252417076 + AluSx SINE Alu 1 295 -17 452 196 11 200 chr1 29776588 29776709 -252416955 + L1MB2 LINE L1 6088 6126 -42 2360 60 0 7 chr1 29776709 29777007 -252416657 - AluY SINE Alu -15 296 1 452 196 11 200 chr1 29777007 29777043 -252416621 + L1MB2 LINE L1 6126 6167 -1 204 228 167 79 chr1 29777402 29777516 -252416148 - L2 LINE L2 0 3313 3190 * 259 209 9 124 chr1 29777509 29777614 -252416050 + MIR SINE MIR 54 146 -62 2167 91 0 16 chr1 29777621 29777930 -252415734 - AluSq SINE Alu -9 304 1 350 246 91 64 chr1 29778027 29778137 -252415527 - MIR SINE MIR -61 147 35 686 121 163 28 chr1 29778160 29778301 -252415363 - FRAM SINE Alu -18 158 1 2424 42 3 7 chr1 29778330 29778637 -252415027 + AluSp SINE Alu 1 306 -7 2239 85 0 0 chr1 29779210 29779504 -252414160 + AluSx SINE Alu 1 294 -18 1885 146 0 3 chr1 29779643 29779945 -252413719 + AluJb SINE Alu 1 301 -11 946 127 0 69 chr1 29780004 29780020 -252413644 + AluSg/x SINE Alu 120 136 -176 2261 82 7 0 chr1 29780020 29780323 -252413341 + AluY SINE Alu 1 305 -6 946 127 0 69 chr1 29780323 29780479 -252413185 + AluSg/x SINE Alu 136 280 -32 441 263 171 44 chr1 29780584 29780835 -252412829 - L2 LINE L2 -905 2409 2127 717 260 42 10 chr1 29781176 29781368 -252412296 + MIR SINE MIR 49 246 -16 182 61 0 30 chr1 29781369 29781402 -252412262 + (TTTTA)n Simple_repeat Simple_repeat 4 35 0 819 144 0 16 chr1 29781404 29781529 -252412135 - FLAM_C SINE Alu -9 124 2 2311 61 24 0 chr1 29781561 29781854 -252411810 - AluY SINE Alu -11 300 1 1130 68 7 0 chr1 29781854 29782001 -252411663 - AluSg/x SINE Alu -11 299 152 321 344 0 0 chr1 29782153 29782246 -252411418 + L1MC4 LINE L1 6614 6706 -1336 * 377 276 0 41 chr1 29782183 29782281 -252411383 - L1MC4 LINE L1 -1339 6703 6610 1999 102 4 0 chr1 29782282 29782556 -252411108 - AluSx SINE Alu -37 275 1 805 148 0 0 chr1 29782562 29782690 -252410974 - FLAM_C SINE Alu -4 139 12 514 135 98 55 chr1 29782707 29782789 -252410875 + Charlie5 DNA MER1_type 2455 2532 -92 1998 128 0 7 chr1 29782789 29783116 -252410548 - AluSx SINE Alu 0 312 1 514 135 98 55 chr1 29783116 29783140 -252410524 + Charlie5 DNA MER1_type 2532 2554 -70 1416 166 40 22 chr1 29783140 29783447 -252410217 - AluSx SINE Alu 0 312 1 514 135 98 55 chr1 29783447 29783500 -252410164 + Charlie5 DNA MER1_type 2554 2624 0 258 191 83 60 chr1 29783663 29783747 -252409917 + L3 LINE CR1 1179 1264 -313 403 215 237 7 chr1 29783817 29783952 -252409712 - MIR SINE MIR -66 196 31 1221 219 72 7 chr1 29783983 29784275 -252409389 - MLT1A1 LTR MaLR -11 354 44 265 188 21 0 chr1 29784343 29784391 -252409273 - MLT1A1 LTR MaLR -325 49 1 638 285 27 5 chr1 29784399 29784585 -252409079 + L3 LINE CR1 1280 1469 -108 2084 125 0 0 chr1 29784602 29784905 -252408759 + AluSx SINE Alu 1 303 -9 189 0 0 0 chr1 29785043 29785064 -252408600 + (TA)n Simple_repeat Simple_repeat 1 21 0 285 279 21 107 chr1 29785742 29785800 -252407864 - MIR SINE MIR -14 248 187 2134 110 3 3 chr1 29785800 29786100 -252407564 - AluSx SINE Alu -12 300 1 285 279 21 107 chr1 29786100 29786181 -252407483 - MIR SINE MIR -75 187 121 1774 163 10 0 chr1 29786424 29786724 -252406940 + AluJo SINE Alu 3 305 -7 319 302 8 95 chr1 29786805 29786931 -252406733 - L2 LINE L2 -27 3286 3172 800 126 0 0 chr1 29787152 29787271 -252406393 - AluSg/x SINE Alu -9 301 183 * 974 150 50 0 chr1 29787270 29787430 -252406234 - AluJb SINE Alu -8 304 137 2242 77 10 0 chr1 29787516 29787813 -252405851 + AluSp SINE Alu 1 300 -13 2255 92 3 0 chr1 29787817 29788120 -252405544 + AluSg SINE Alu 7 310 0 530 172 66 0 chr1 29788120 29788242 -252405422 + L1ME2 LINE L1 5729 5858 -306 935 164 0 0 chr1 29788243 29788395 -252405269 + FRAM SINE Alu 1 151 -25 1063 207 6 78 chr1 29788399 29788671 -252404993 + L1ME2 LINE L1 5860 6107 -57 2192 116 0 0 chr1 29788671 29788981 -252404683 - AluSq SINE Alu -3 310 1 1063 207 6 78 chr1 29788981 29789027 -252404637 + L1ME2 LINE L1 6107 6155 -9 1318 157 40 95 chr1 29789114 29789248 -252404416 - AluJb SINE Alu -5 307 167 2241 98 0 16 chr1 29789248 29789565 -252404099 + AluSx SINE Alu 1 312 0 1318 157 40 95 chr1 29789565 29789755 -252403909 - AluJb SINE Alu -145 167 1 237 175 222 0 chr1 29790167 29790230 -252403434 + AluJo SINE Alu 1 77 -225 207 0 0 0 chr1 29790233 29790256 -252403408 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1884 116 0 4 chr1 29790261 29790529 -252403135 - AluSx SINE Alu -45 267 1 1480 137 4 8 chr1 29790529 29790763 -252402901 + AluJo SINE Alu 67 299 -13 1710 174 0 14 chr1 29790832 29791125 -252402539 + AluJb SINE Alu 5 293 -19 2104 71 0 52 chr1 29791128 29791270 -252402394 + AluSx SINE Alu 2 150 -162 2002 115 0 3 chr1 29791270 29791584 -252402080 + AluSq SINE Alu 1 313 0 2104 71 0 52 chr1 29791584 29791779 -252401885 + AluSx SINE Alu 150 312 0 1933 117 10 3 chr1 29791802 29792092 -252401572 + AluSx SINE Alu 1 292 -20 193 226 57 19 chr1 29792602 29792655 -252401009 - MIR SINE MIR -103 159 105 1998 52 45 4 chr1 29792690 29792959 -252400705 + AluY SINE Alu 26 305 -6 233 259 32 143 chr1 29793083 29793272 -252400392 - MIR3 SINE MIR -1 207 40 636 294 33 5 chr1 29793284 29793468 -252400196 + MIR SINE MIR 22 210 -52 182 138 35 0 chr1 29793492 29793521 -252400143 - MIR SINE MIR -116 146 117 196 275 14 58 chr1 29793862 29793931 -252399733 + L3 LINE CR1 98 163 -1414 390 307 0 60 chr1 29794029 29794179 -252399485 + MIR SINE MIR 2 142 -120 1841 169 23 13 chr1 29794185 29794492 -252399172 - AluJb SINE Alu -2 310 1 2445 86 6 10 chr1 29794617 29794931 -252398733 + AluSq SINE Alu 1 313 0 1181 38 0 0 chr1 29795018 29795149 -252398515 + AluYb8 SINE Alu 1 131 -187 2616 65 0 0 chr1 29795153 29795461 -252398203 + AluY SINE Alu 1 308 -3 754 176 26 39 chr1 29795611 29795764 -252397900 + FRAM SINE Alu 1 146 -30 2382 69 3 7 chr1 29795764 29796055 -252397609 - AluSp SINE Alu -23 290 1 2137 140 3 9 chr1 29796457 29796636 -252397028 - AluSq SINE Alu 0 313 135 2404 97 0 0 chr1 29796636 29796935 -252396729 - AluSx SINE Alu -13 299 1 2137 140 3 9 chr1 29796935 29797070 -252396594 - AluSq SINE Alu -178 135 1 2405 72 0 0 chr1 29797400 29797713 -252395951 - AluSc SINE Alu 0 313 1 1957 199 82 27 chr1 29797737 29798215 -252395449 + MLT1D LTR MaLR 2 505 0 1814 173 7 17 chr1 29798249 29798550 -252395114 - AluSq SINE Alu -13 300 3 318 179 0 0 chr1 29798563 29798619 -252395045 - AluJ/FRAM SINE Alu -15 287 232 2181 109 0 3 chr1 29798627 29798934 -252394730 - AluY SINE Alu 0 306 1 1129 150 68 14 chr1 29798968 29799260 -252394404 + L1MB8 LINE L1 5777 6178 0 2217 100 3 17 chr1 29799397 29799698 -252393966 - AluSp SINE Alu -16 297 1 1496 131 26 137 chr1 29799704 29799739 -252393925 - AluYb8 SINE Alu -6 312 275 2045 99 19 26 chr1 29799739 29800052 -252393612 + AluY SINE Alu 1 311 0 1496 131 26 137 chr1 29800052 29800367 -252393297 - AluYb8 SINE Alu -43 275 1 2335 99 3 6 chr1 29800369 29800683 -252392981 - AluSp SINE Alu 0 313 1 211 280 13 27 chr1 29800694 29800769 -252392895 - MIR SINE MIR -46 216 143 299 25 25 0 chr1 29800769 29800809 -252392855 + (TTTTA)n Simple_repeat Simple_repeat 1 41 0 1106 178 5 20 chr1 29800809 29801006 -252392658 - AluJo SINE Alu -32 280 87 687 209 22 9 chr1 29801006 29801159 -252392505 - MIR SINE MIR -62 146 6 264 30 0 0 chr1 29801554 29801587 -252392077 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 2358 88 0 3 chr1 29801737 29802031 -252391633 - AluSx SINE Alu -8 304 12 310 247 121 118 chr1 29802463 29802516 -252391148 + MIR SINE MIR 3 54 -208 2313 101 7 0 chr1 29802516 29802822 -252390842 + AluSq SINE Alu 1 308 -5 3229 137 16 89 chr1 29802824 29803061 -252390603 + L1MD1 LINE L1 5601 5854 -388 2044 153 0 6 chr1 29803061 29803374 -252390290 + AluJb SINE Alu 1 311 -1 3229 137 16 89 chr1 29803374 29803761 -252389903 + L1MD1 LINE L1 5854 6173 -69 1820 153 11 7 chr1 29803761 29804048 -252389616 - AluJo SINE Alu -24 288 1 3229 137 16 89 chr1 29804048 29804108 -252389556 + L1MD1 LINE L1 6173 6236 -6 310 247 121 118 chr1 29804108 29804317 -252389347 + MIR SINE MIR 54 262 0 676 165 66 26 chr1 29804433 29804582 -252389082 + L1MB5 LINE L1 5423 5565 -615 1833 115 66 17 chr1 29804582 29804869 -252388795 + AluSx SINE Alu 1 301 -11 676 165 66 26 chr1 29804869 29805205 -252388459 + L1MB5 LINE L1 5565 5886 -294 2256 126 3 0 chr1 29805205 29805515 -252388149 + AluSx SINE Alu 1 311 -1 676 165 66 26 chr1 29805515 29805639 -252388025 + L1MB5 LINE L1 5886 6004 -176 1593 179 47 0 chr1 29805639 29805918 -252387746 - AluJo SINE Alu -20 292 1 676 165 66 26 chr1 29805918 29805933 -252387731 + L1MB5 LINE L1 6004 6150 -30 926 195 0 0 chr1 29805933 29806082 -252387582 + FRAM SINE Alu 1 144 -32 389 305 17 0 chr1 29806166 29806284 -252387380 - MLT1L LTR MaLR -64 551 432 312 121 30 0 chr1 29806427 29806493 -252387171 - L1MB7 LINE L1 0 6184 6117 289 173 0 0 chr1 29806495 29806547 -252387117 + L1MA10 LINE L1 6254 6305 -29 648 198 0 60 chr1 29806555 29806722 -252386942 - L1MB8 LINE L1 -63 6115 5959 1296 133 63 133 chr1 29806722 29807039 -252386625 + AluJo SINE Alu 11 305 -7 1326 141 8 4 chr1 29807044 29807285 -252386379 - L1MB8 LINE L1 -211 5967 5726 2160 97 0 4 chr1 29807289 29807567 -252386097 - AluSx SINE Alu -15 297 21 1856 128 43 26 chr1 29807573 29807909 -252385755 - AluSx SINE Alu 0 341 1 2073 123 0 10 chr1 29807913 29808213 -252385451 - AluSg SINE Alu -12 298 2 381 250 143 7 chr1 29808214 29808354 -252385310 - MLT1L LTR MaLR -317 298 140 30 0 0 0 chr1 29808495 29808525 -252385139 + AT_rich Low_complexity Low_complexity 1 30 0 692 182 0 0 chr1 29808525 29808635 -252385029 - FLAM_A SINE Alu -23 119 10 211 211 0 0 chr1 29808659 29808711 -252384953 + T-rich Low_complexity Low_complexity 1 52 0 1474 134 79 8 chr1 29808767 29809021 -252384643 + AluJb SINE Alu 41 312 0 1003 198 42 28 chr1 29809122 29809334 -252384330 - AluJb SINE Alu -12 300 86 1737 100 0 0 chr1 29809334 29809554 -252384110 - AluJb SINE Alu -92 220 1 512 236 29 7 chr1 29809709 29809849 -252383815 - MLT1K LTR MaLR 0 588 446 2287 125 0 0 chr1 29809851 29810156 -252383508 - AluSq SINE Alu -7 306 2 180 315 108 36 chr1 29810288 29810399 -252383265 + L2 LINE L2 2940 3058 -214 2263 92 0 0 chr1 29810452 29810775 -252382889 - AluSc SINE Alu 0 323 1 196 352 45 34 chr1 29810838 29810926 -252382738 + L2 LINE L2 3137 3225 -47 438 264 16 32 chr1 29810929 29811054 -252382610 + MIR SINE MIR 65 187 -75 290 258 82 0 chr1 29811098 29811195 -252382469 - MIR SINE MIR -147 115 11 180 210 86 37 chr1 29811336 29811417 -252382247 + L2 LINE L2 2889 2973 -340 683 244 111 49 chr1 29811820 29811884 -252381780 - MIR SINE MIR -12 250 191 1061 193 63 5 chr1 29811884 29812091 -252381573 - MER20 DNA MER1_type 0 219 1 683 244 111 49 chr1 29812091 29812251 -252381413 - MIR SINE MIR -71 191 12 349 129 2 0 chr1 29812267 29812323 -252381341 + L1ME1 LINE L1 5470 5523 -643 839 159 7 40 chr1 29812325 29812476 -252381188 + AluJo SINE Alu 1 146 -166 917 186 16 0 chr1 29812485 29812673 -252380991 + L1ME1 LINE L1 5698 5888 -278 1010 197 0 5 chr1 29812673 29812861 -252380803 + AluJb SINE Alu 118 304 -8 1453 198 6 61 chr1 29812956 29813130 -252380534 - AluSp SINE Alu -14 299 117 2532 28 0 7 chr1 29813130 29813416 -252380248 - AluYb8 SINE Alu 0 318 35 2028 84 23 4 chr1 29813424 29813685 -252379979 - AluSp SINE Alu -14 299 34 1453 198 6 61 chr1 29813685 29813814 -252379850 - AluSp SINE Alu -203 110 4 344 251 145 92 chr1 29814091 29814268 -252379396 + L1ME1 LINE L1 5935 6126 -40 2191 97 7 7 chr1 29814268 29814566 -252379098 + AluSx SINE Alu 1 298 -14 344 251 145 92 chr1 29814566 29814595 -252379069 + L1ME1 LINE L1 6126 6152 -14 248 221 103 0 chr1 29814763 29814831 -252378833 + L2 LINE L2 3012 3086 -186 2041 128 21 0 chr1 29814875 29815164 -252378500 + AluSx SINE Alu 1 295 -17 34 0 0 0 chr1 29815229 29815263 -252378401 + AT_rich Low_complexity Low_complexity 1 34 0 272 225 77 115 chr1 29815268 29815428 -252378236 - MIR SINE MIR -59 203 45 212 281 181 44 chr1 29815496 29815656 -252378008 + MIR SINE MIR 67 248 -14 371 82 0 16 chr1 29815658 29815673 -252377991 + (TA)n Simple_repeat Simple_repeat 2 16 -45 2533 61 0 0 chr1 29815673 29815967 -252377697 + AluY SINE Alu 1 294 -17 371 82 0 16 chr1 29815967 29816012 -252377652 + (TA)n Simple_repeat Simple_repeat 16 61 0 1779 141 18 18 chr1 29816019 29816303 -252377361 - AluJb SINE Alu -28 284 1 301 173 107 40 chr1 29816366 29816441 -252377223 - L2 LINE L2 -11 3261 3182 183 152 61 0 chr1 29816632 29816665 -252376999 - MIR SINE MIR -56 152 118 197 299 26 134 chr1 29816789 29816807 -252376857 - MIR SINE MIR -70 192 174 2144 132 0 3 chr1 29816807 29817103 -252376561 - AluSx SINE Alu -16 296 2 197 299 26 134 chr1 29817103 29817278 -252376386 - MIR SINE MIR -88 174 20 520 262 6 49 chr1 29817448 29817612 -252376052 - L2 LINE L2 -3 3310 3154 2312 109 0 0 chr1 29817715 29818018 -252375646 + AluSx SINE Alu 1 303 -9 2292 98 0 20 chr1 29818018 29818324 -252375340 + AluSg SINE Alu 1 300 -10 2254 90 7 0 chr1 29818327 29818615 -252375049 + AluSp SINE Alu 18 307 -6 2004 122 31 3 chr1 29818616 29818904 -252374760 + AluSq SINE Alu 2 297 -16 1729 135 71 24 chr1 29818964 29819261 -252374403 + AluJo SINE Alu 1 311 -1 426 320 129 52 chr1 29819373 29819721 -252373943 + L2 LINE L2 2735 3140 -132 2084 126 27 3 chr1 29819721 29820015 -252373649 + AluSx SINE Alu 1 301 -11 426 320 129 52 chr1 29820015 29820158 -252373506 + L2 LINE L2 3140 3271 -1 2593 74 0 10 chr1 29820168 29820480 -252373184 + AluSg SINE Alu 2 310 0 222 135 37 6 chr1 29820716 29820769 -252372895 - MIR SINE MIR -90 118 63 289 261 0 0 chr1 29820887 29820956 -252372708 + MIR SINE MIR 83 151 -57 839 250 109 25 chr1 29820970 29821254 -252372410 - LTR16A LTR ERVL -23 427 120 2345 110 3 3 chr1 29821592 29821902 -252371762 + AluSx SINE Alu 3 312 0 344 320 0 0 chr1 29821921 29821999 -252371665 + L2 LINE L2 3134 3211 -61 189 327 19 0 chr1 29822044 29822096 -252371568 + MER5A DNA MER1_type 46 98 -91 2172 112 0 33 chr1 29822208 29822513 -252371151 - AluSq SINE Alu -18 295 1 1220 131 5 11 chr1 29822565 29822756 -252370908 + AluSg/x SINE Alu 120 309 -1 314 179 0 0 chr1 29822933 29822989 -252370675 - AluSq SINE Alu -7 295 240 1269 129 0 0 chr1 29822989 29823159 -252370505 - AluSq SINE Alu -143 170 1 948 60 90 8 chr1 29823171 29823304 -252370360 - AluY SINE Alu -11 300 157 260 226 108 39 chr1 29823333 29823435 -252370229 - MIR SINE MIR -42 220 112 507 267 75 19 chr1 29823447 29823608 -252370056 + MIR SINE MIR 22 191 -71 1274 70 0 120 chr1 29823610 29823810 -252369854 - AluY SINE Alu -135 176 1 1006 183 277 0 chr1 29823875 29824110 -252369554 + AluSx SINE Alu 1 300 -2 192 306 153 14 chr1 29824120 29824192 -252369472 + MIR SINE MIR 28 109 -153 555 272 82 44 chr1 29824208 29824414 -252369250 - MIR SINE MIR -27 235 22 268 282 149 29 chr1 29824354 29824528 -252369136 + MIR SINE MIR 26 220 -42 * 2133 124 0 3 chr1 29824550 29824840 -252368824 + AluSx SINE Alu 1 289 -23 364 264 72 26 chr1 29824879 29825021 -252368643 - MIR SINE MIR -62 146 2 265 204 15 15 chr1 29825226 29825295 -252368369 - MIR SINE MIR -84 124 61 203 318 58 58 chr1 29825445 29825599 -252368065 + MIR3 SINE MIR 3 156 -52 1779 98 0 5 chr1 29827859 29828083 -252365581 + AluSg SINE Alu 1 223 -87 609 192 0 0 chr1 29828158 29828262 -252365402 + FLAM_A SINE Alu 23 126 -16 1178 214 68 4 chr1 29828262 29828514 -252365150 + AluJb SINE Alu 36 303 -9 2160 118 14 0 chr1 29828523 29828819 -252364845 + AluY SINE Alu 1 300 -11 306 288 0 0 chr1 29828819 29828892 -252364772 - MIR SINE MIR -90 118 46 209 217 65 0 chr1 29828909 29828955 -252364709 - MIR SINE MIR -94 168 120 357 208 42 0 chr1 29829587 29829659 -252364005 - MIR SINE MIR -56 152 78 2423 88 0 0 chr1 29829782 29830076 -252363588 - AluSg SINE Alu -14 296 3 276 336 75 0 chr1 29830210 29830317 -252363347 - MIR SINE MIR -63 145 31 1913 149 0 42 chr1 29830850 29831159 -252362505 + AluSx SINE Alu 2 297 -15 2178 101 0 46 chr1 29831159 29831484 -252362180 + AluY SINE Alu 1 311 0 2320 117 3 0 chr1 29831486 29831794 -252361870 + AluSp SINE Alu 1 309 -4 27 29 0 0 chr1 29831852 29831886 -252361778 + AT_rich Low_complexity Low_complexity 1 34 0 1688 58 0 0 chr1 29832013 29832203 -252361461 + AluY SINE Alu 107 296 -15 2247 112 10 0 chr1 29832286 29832581 -252361083 + AluSx SINE Alu 5 302 -10 1093 186 6 0 chr1 29832999 29833182 -252360482 + AluJb SINE Alu 1 184 -128 966 125 69 0 chr1 29833182 29833326 -252360338 + AluSq SINE Alu 93 246 -67 249 33 0 0 chr1 29833330 29833360 -252360304 + (TAAAAA)n Simple_repeat Simple_repeat 2 31 0 2013 113 62 0 chr1 29833417 29833708 -252359956 - AluSp SINE Alu -4 309 1 2790 89 12 147 chr1 29833708 29834079 -252359585 - Tigger1 DNA MER2_type -324 2094 1675 2222 115 6 10 chr1 29834079 29834414 -252359250 + AluSq SINE Alu 1 313 0 2790 89 12 147 chr1 29834414 29834493 -252359171 - Tigger1 DNA MER2_type -743 1675 1738 1627 134 0 0 chr1 29834493 29834724 -252358940 - AluSg/x SINE Alu -1 309 79 2790 89 12 147 chr1 29834724 29834859 -252358805 - Tigger1 DNA MER2_type -679 1739 1587 2316 104 3 0 chr1 29834860 29835158 -252358506 - AluSx SINE Alu -13 299 1 4442 115 8 39 chr1 29835158 29835325 -252358339 - Tigger1 DNA MER2_type -1207 1211 1040 2249 105 3 7 chr1 29835325 29835629 -252358035 - AluSc SINE Alu -6 303 1 4442 115 8 39 chr1 29835629 29836098 -252357566 - Tigger1 DNA MER2_type -1378 1040 558 2922 10 0 0 chr1 29836098 29836408 -252357256 + AluYb8 SINE Alu 1 310 -8 2379 78 14 3 chr1 29836416 29836712 -252356952 + AluSg SINE Alu 1 299 -11 4442 115 8 39 chr1 29836712 29836841 -252356823 - Tigger1 DNA MER2_type -1867 551 460 1600 142 3 115 chr1 29836843 29836977 -252356687 + AluJo SINE Alu 2 149 -153 2170 93 0 59 chr1 29836977 29837299 -252356365 + AluSg SINE Alu 1 303 -7 1600 142 3 115 chr1 29837299 29837411 -252356253 + AluJo SINE Alu 149 202 -100 207 0 0 0 chr1 29837411 29837434 -252356230 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1600 142 3 115 chr1 29837434 29837525 -252356139 + AluJo SINE Alu 202 302 0 275 208 0 0 chr1 29837525 29837578 -252356086 - Tigger1 DNA MER2_type -2363 55 3 2189 84 10 32 chr1 29837578 29837887 -252355777 + AluSc SINE Alu 1 302 -7 183 361 0 0 chr1 29837938 29838010 -252355654 - L3b LINE CR1 -294 1289 1218 1384 170 116 33 chr1 29838053 29838329 -252355335 - AluJo SINE Alu -13 299 1 2435 93 3 0 chr1 29838334 29838634 -252355030 - AluSx SINE Alu -11 301 1 2038 130 0 65 chr1 29838634 29838956 -252354708 - AluJb SINE Alu -11 301 1 534 268 32 6 chr1 29839050 29839207 -252354457 - MIR SINE MIR -58 204 44 369 225 0 12 chr1 29839517 29839597 -252354067 - L2 LINE L2 -1 3271 3193 210 344 154 41 chr1 29840317 29840472 -252353192 + MIR3 SINE MIR 19 169 -39 354 312 45 32 chr1 29840844 29840998 -252352666 - MIR3 SINE MIR -7 201 46 293 276 76 9 chr1 29841241 29841346 -252352318 + MIR SINE MIR 19 130 -78 844 113 66 40 chr1 29841355 29841506 -252352158 - FRAM SINE Alu -1 175 21 315 250 95 17 chr1 29841519 29841635 -252352029 + MIR SINE MIR 134 258 -4 278 148 19 0 chr1 29842157 29842211 -252351453 + CT-rich Low_complexity Low_complexity 2 56 0 1238 66 0 0 chr1 29842226 29842377 -252351287 + AluSq SINE Alu 131 281 -32 213 39 0 0 chr1 29842377 29842403 -252351261 + (CAAT)n Simple_repeat Simple_repeat 4 29 0 290 313 67 20 chr1 29842588 29842783 -252350881 + L1MC4a LINE L1 5692 5895 -1913 414 186 199 62 chr1 29843076 29843367 -252350297 - L1ME4a LINE L1 -185 5936 5606 744 151 50 0 chr1 29843381 29843500 -252350164 - FLAM_A SINE Alu -4 129 5 2446 64 3 17 chr1 29843517 29843798 -252349866 + AluSp SINE Alu 1 279 -34 226 0 0 0 chr1 29843798 29843823 -252349841 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 2446 64 3 17 chr1 29843823 29843839 -252349825 + AluSp SINE Alu 279 294 -19 2204 88 0 0 chr1 29843863 29844158 -252349506 - AluY SINE Alu -16 295 1 276 225 70 14 chr1 29844480 29844551 -252349113 + Charlie8 DNA MER1_type 105 179 -2238 263 128 0 0 chr1 29844616 29844655 -252349009 + Charlie8 DNA MER1_type 1368 1406 -1011 2077 114 7 7 chr1 29844711 29845019 -252348645 + AluSx SINE Alu 1 308 -4 218 264 0 0 chr1 29845339 29845392 -252348272 + L2 LINE L2 2837 2889 -425 834 216 0 0 chr1 29845394 29845570 -252348094 - FRAM SINE Alu -5 171 1 2026 99 38 0 chr1 29845590 29845882 -252347782 + AluSp SINE Alu 1 303 -10 410 197 0 0 chr1 29845895 29845971 -252347693 + AluJ/FLAM SINE Alu 1 76 -236 659 103 0 60 chr1 29845971 29846087 -252347577 - Tigger1 DNA MER2_type -1681 737 629 556 127 0 0 chr1 29846139 29846218 -252347446 - AluJ/FLAM SINE Alu -232 80 2 1928 112 28 0 chr1 29846219 29846505 -252347159 - Tigger1 DNA MER2_type -1601 817 524 2500 58 0 3 chr1 29846505 29846815 -252346849 - AluSc SINE Alu 0 309 1 204 265 20 0 chr1 29846825 29846874 -252346790 + MER5B DNA MER1_type 127 176 -2 2065 119 13 0 chr1 29846884 29847186 -252346478 - AluSx SINE Alu -6 306 1 233 330 38 18 chr1 29847472 29847647 -252346017 + MIR SINE MIR 34 211 -48 1302 159 183 0 chr1 29847733 29847853 -252345811 - AluJb SINE Alu -5 297 200 216 0 0 0 chr1 29847853 29847877 -252345787 + (TTA)n Simple_repeat Simple_repeat 2 25 0 1302 159 183 0 chr1 29847877 29848007 -252345657 - AluJb SINE Alu -102 200 1 262 244 8 102 chr1 29848108 29848235 -252345429 + LTR67 LTR ERVL 429 543 -14 21 0 0 0 chr1 29848237 29848258 -252345406 + AT_rich Low_complexity Low_complexity 1 21 0 741 152 67 96 chr1 29848547 29848663 -252345001 - MER5A DNA MER1_type 0 189 78 2244 84 3 0 chr1 29848663 29848961 -252344703 - AluSg SINE Alu -11 299 1 741 152 67 96 chr1 29848961 29849022 -252344642 - MER5A DNA MER1_type -111 78 17 2124 120 0 0 chr1 29849272 29849571 -252344093 - AluSx SINE Alu -13 299 1 592 194 47 16 chr1 29849941 29850070 -252343594 - FLAM_A SINE Alu 0 133 1 245 288 106 38 chr1 29850430 29850562 -252343102 + MIR3 SINE MIR 30 170 -38 2197 107 7 0 chr1 29850626 29850924 -252342740 - AluSx SINE Alu -12 300 1 187 311 78 48 chr1 29851003 29851106 -252342558 + L2 LINE L2 3034 3139 -174 276 241 0 17 chr1 29852000 29852058 -252341606 + MIR3 SINE MIR 113 169 -39 2312 72 3 3 chr1 29853675 29853981 -252339683 + AluSx SINE Alu 1 306 -6 654 172 45 30 chr1 29853982 29854116 -252339548 + MER4D LTR ERV1 768 903 0 2194 92 6 19 chr1 29854183 29854500 -252339164 + AluSp SINE Alu 1 313 0 1351 74 6 0 chr1 29854500 29854676 -252338988 + AluSp SINE Alu 134 310 -3 199 214 24 24 chr1 29854735 29854777 -252338887 - L2 LINE L2 -75 3238 3197 1920 114 37 0 chr1 29854881 29855174 -252338490 + AluSg SINE Alu 1 303 0 1129 153 0 89 chr1 29855287 29855426 -252338238 + L1MB5 LINE L1 5901 6012 -162 1602 110 107 4 chr1 29855426 29855689 -252337975 + AluSg SINE Alu 1 290 -20 1129 153 0 89 chr1 29855689 29855785 -252337879 + L1MB5 LINE L1 6012 6115 -59 1364 117 19 6 chr1 29855788 29856045 -252337619 + AluJb SINE Alu 1 303 -9 339 203 0 0 chr1 29856112 29856171 -252337493 + L1MB5 LINE L1 6116 6174 0 331 232 24 0 chr1 29856817 29856903 -252336761 - MIR SINE MIR -61 147 75 330 240 125 31 chr1 29856926 29857022 -252336642 + L2 LINE L2 3209 3313 0 749 192 64 19 chr1 29857084 29857240 -252336424 + FRAM SINE Alu 1 163 -3 2134 64 43 0 chr1 29857260 29857542 -252336122 + AluY SINE Alu 1 294 -17 1634 173 6 13 chr1 29857710 29858023 -252335641 - AluJb SINE Alu -1 311 1 1458 153 0 4 chr1 29858056 29858297 -252335367 - AluJb SINE Alu -13 299 60 885 146 7 7 chr1 29858297 29858448 -252335216 - AluJo SINE Alu -161 151 1 2168 93 3 0 chr1 29858458 29858747 -252334917 - AluSg SINE Alu -20 290 1 333 160 120 0 chr1 29858755 29858830 -252334834 - L1MC/D LINE L1 -1991 5817 5734 378 184 0 0 chr1 29858901 29858977 -252334687 + (TG)n Simple_repeat Simple_repeat 2 77 0 1848 134 17 7 chr1 29859678 29859970 -252333694 - AluJb SINE Alu -17 295 1 267 263 37 34 chr1 29860408 29860598 -252333066 - MIR SINE MIR -13 249 13 427 229 106 70 chr1 29861162 29861389 -252332275 - MIR SINE MIR -6 256 22 279 204 161 65 chr1 29862040 29862133 -252331531 + MIR SINE MIR 37 138 -70 436 222 105 46 chr1 29862734 29862887 -252330777 - MIR SINE MIR 0 262 101 532 339 63 5 chr1 29862958 29863179 -252330485 - MIR SINE MIR -3 259 26 896 109 0 36 chr1 29863182 29863319 -252330345 - FLAM_C SINE Alu 0 133 2 2123 92 14 3 chr1 29863351 29863643 -252330021 + AluSp SINE Alu 1 295 -18 2479 44 0 0 chr1 29863852 29864149 -252329515 - AluY SINE Alu -13 298 2 623 218 16 8 chr1 29864250 29864374 -252329290 + L2 LINE L2 3189 3313 0 23 54 0 0 chr1 29864584 29864621 -252329043 + AT_rich Low_complexity Low_complexity 1 37 0 309 273 68 0 chr1 29864762 29864850 -252328814 + MIR SINE MIR 102 195 -67 349 123 41 0 chr1 29865458 29865531 -252328133 + CT-rich Low_complexity Low_complexity 1 76 0 2194 105 3 0 chr1 29865531 29865836 -252327828 - AluSp SINE Alu -7 306 1 609 218 0 0 chr1 29865844 29865954 -252327710 - FRAM SINE Alu -67 109 1 216 299 109 22 chr1 29865965 29866149 -252327515 + L2 LINE L2 2563 2762 -552 255 220 37 119 chr1 29866771 29866880 -252326784 + MIR SINE MIR 21 120 -142 1726 132 45 7 chr1 29867376 29867663 -252326001 + AluJo SINE Alu 6 303 -9 433 287 143 19 chr1 29867667 29867876 -252325788 + MIR SINE MIR 28 262 0 552 246 8 8 chr1 29867898 29868016 -252325648 - MER5B DNA MER1_type -1 177 60 229 253 0 58 chr1 29868043 29868130 -252325534 - MIR SINE MIR -9 253 172 * 418 253 238 21 chr1 29868113 29868394 -252325270 - L2 LINE L2 0 3313 2972 581 210 8 17 chr1 29868404 29868523 -252325141 + AluJo/FLAM SINE Alu 11 128 -184 2293 74 0 3 chr1 29868525 29868821 -252324843 + AluSp SINE Alu 1 295 -18 220 164 36 18 chr1 29868839 29868894 -252324770 - L2 LINE L2 -337 2976 2921 387 246 39 31 chr1 29869105 29869235 -252324429 - MIR3 SINE MIR -34 174 44 931 167 61 10 chr1 29869404 29869602 -252324062 + MER3 DNA MER1_type 2 209 0 221 295 26 13 chr1 29869636 29869714 -252323950 - MIR SINE MIR -119 143 65 1475 96 0 0 chr1 29869873 29870072 -252323592 - AluSg/x SINE Alu -2 310 112 973 161 5 36 chr1 29870084 29870276 -252323388 - AluJo SINE Alu -125 187 2 230 250 0 69 chr1 29870412 29870484 -252323180 - MIR SINE MIR -170 92 26 203 269 92 77 chr1 29870866 29870996 -252322668 - MIR SINE MIR -24 238 107 2156 109 0 0 chr1 29871270 29871573 -252322091 - AluY SINE Alu -8 303 1 1764 138 74 0 chr1 29871576 29871859 -252321805 - AluJb SINE Alu -8 304 1 2289 109 0 0 chr1 29872139 29872451 -252321213 + AluSx SINE Alu 1 312 0 515 267 82 30 chr1 29872649 29872881 -252320783 - MIR SINE MIR -1 261 18 279 232 120 56 chr1 29873238 29873380 -252320284 + MIR SINE MIR 100 250 -12 251 120 0 20 chr1 29874027 29874077 -252319587 + (AGGGGG)n Simple_repeat Simple_repeat 2 50 0 1986 75 11 11 chr1 29874177 29874456 -252319208 - AluSq SINE Alu -34 279 1 1334 160 126 8 chr1 29874538 29874800 -252318864 - AluJo SINE Alu -18 294 2 193 402 54 0 chr1 29874959 29875051 -252318613 + L2 LINE L2 3144 3240 -32 804 134 0 85 chr1 29875096 29875260 -252318404 + AluJb SINE Alu 156 305 -7 764 154 8 46 chr1 29875323 29875453 -252318211 - FLAM_C SINE Alu -8 125 1 374 300 9 18 chr1 29875453 29875563 -252318101 - L2 LINE L2 -2 3311 3203 785 147 0 70 chr1 29875781 29875924 -252317740 - FLAM_C SINE Alu 0 133 1 2053 93 3 13 chr1 29876098 29876398 -252317266 - AluSc SINE Alu -12 297 1 631 228 108 12 chr1 29876526 29876693 -252316971 + MIR SINE MIR 31 213 -49 246 254 0 18 chr1 29876730 29876785 -252316879 + L2 LINE L2 3210 3263 -9 1156 138 43 43 chr1 29877118 29877350 -252316314 - MER46A DNA MER2_type -4 232 1 2320 86 0 0 chr1 29877517 29877821 -252315843 - AluSg SINE Alu -6 304 1 648 209 0 43 chr1 29878125 29878264 -252315400 - FLAM_A SINE Alu 0 133 1 798 197 20 7 chr1 29878277 29878444 -252315220 - FRAM SINE Alu 0 169 1 1989 137 3 0 chr1 29878464 29878763 -252314901 - AluSx SINE Alu -12 300 1 198 0 0 0 chr1 29878763 29878785 -252314879 + (A)n Simple_repeat Simple_repeat 1 22 0 2082 92 18 0 chr1 29879380 29879664 -252314000 - AluSg SINE Alu -19 291 3 297 125 0 0 chr1 29879685 29879725 -252313939 - MER57A LTR ERV1 -69 334 295 1872 127 32 35 chr1 29879841 29879886 -252313778 - L1MB4 LINE L1 0 6180 6136 2010 117 10 7 chr1 29879886 29880184 -252313480 + AluSx SINE Alu 1 299 -13 1872 127 32 35 chr1 29880184 29880477 -252313187 - L1MB4 LINE L1 -44 6136 5843 719 249 30 10 chr1 29880565 29880766 -252312898 - L1MC4 LINE L1 -143 7899 7695 262 265 0 0 chr1 29880781 29880849 -252312815 - L1MC4 LINE L1 -281 7761 7694 434 210 7 101 chr1 29880879 29880990 -252312674 - AluJo SINE Alu -79 233 136 1902 121 0 10 chr1 29880990 29881288 -252312376 - AluSg SINE Alu -14 296 2 434 210 7 101 chr1 29881288 29881314 -252312350 - AluJo SINE Alu -176 136 109 2206 105 0 0 chr1 29881322 29881618 -252312046 + AluSx SINE Alu 1 296 -16 1265 219 140 4 chr1 29881624 29882109 -252311555 - L1MC4a LINE L1 -558 7250 6535 706 149 26 0 chr1 29882152 29882266 -252311398 - FLAM_C SINE Alu 0 143 27 2450 162 45 14 chr1 29883319 29883382 -252310282 - L1MB3 LINE L1 0 6183 6123 2302 102 0 0 chr1 29883382 29883686 -252309978 - AluSx SINE Alu -8 304 1 2450 162 45 14 chr1 29883686 29884110 -252309554 - L1MB3 LINE L1 -60 6123 5681 2274 90 0 3 chr1 29884520 29884832 -252308832 - AluY SINE Alu 0 311 1 1412 184 228 0 chr1 29885166 29885486 -252308178 + MSTD LTR MaLR 2 394 -2 266 283 30 72 chr1 29885734 29885900 -252307764 - L1MC4 LINE L1 -124 7918 7760 1856 131 40 3 chr1 29885913 29886211 -252307453 + AluSx SINE Alu 1 309 -3 2159 95 0 3 chr1 29886367 29886663 -252307001 - AluY SINE Alu -16 295 1 976 138 7 0 chr1 29887114 29887266 -252306398 - AluSx SINE Alu -159 153 1 968 193 0 35 chr1 29887266 29887468 -252306196 + AluJo SINE Alu 101 295 -17 2401 78 3 0 chr1 29887495 29887804 -252305860 + AluSp SINE Alu 1 310 -3 1043 118 7 0 chr1 29888399 29888551 -252305113 - AluSx SINE Alu -159 153 1 922 206 0 34 chr1 29888551 29888755 -252304909 + AluJo SINE Alu 101 297 -15 2371 73 3 0 chr1 29888782 29889085 -252304579 + AluSp SINE Alu 1 304 -9 1055 105 7 0 chr1 29889671 29889823 -252303841 - AluSx SINE Alu -159 153 1 951 197 0 35 chr1 29889823 29890026 -252303638 + AluJo SINE Alu 101 296 -16 2270 81 3 0 chr1 29890053 29890349 -252303315 + AluSp SINE Alu 1 297 -16 261 225 90 81 chr1 29890368 29890479 -252303185 + MER5A DNA MER1_type 78 189 0 22 0 0 0 chr1 29890637 29890659 -252303005 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr1 29891095 29891127 -252302537 + AT_rich Low_complexity Low_complexity 1 32 0 1900 154 3 3 chr1 29891326 29891638 -252302026 - AluSx SINE Alu 0 312 1 224 372 21 21 chr1 29891815 29891844 -252301820 - L3b LINE CR1 -328 1255 1227 1912 164 7 16 chr1 29891844 29892154 -252301510 - AluJb SINE Alu -5 307 1 224 372 21 21 chr1 29892154 29892218 -252301446 - L3b LINE CR1 -355 1228 1162 844 302 31 16 chr1 29892666 29892921 -252300743 + MIR SINE MIR 3 261 -1 637 247 41 21 chr1 29892926 29893120 -252300544 - MIR SINE MIR -32 230 33 22 0 0 0 chr1 29893275 29893297 -252300367 + AT_rich Low_complexity Low_complexity 1 22 0 1794 158 16 39 chr1 29893314 29893625 -252300039 + AluJb SINE Alu 7 310 -2 414 53 0 0 chr1 29893674 29893731 -252299933 + (TA)n Simple_repeat Simple_repeat 2 58 0 1980 142 0 0 chr1 29893731 29894013 -252299651 - AluSx SINE Alu -29 283 2 413 167 68 61 chr1 29894036 29894168 -252299496 - L1MC4 LINE L1 -137 7905 7773 180 262 16 33 chr1 29894232 29894293 -252299371 + MER5B DNA MER1_type 84 143 -35 1296 137 34 0 chr1 29894392 29894596 -252299068 - MER46A DNA MER2_type 0 236 26 1665 155 63 36 chr1 29894696 29894999 -252298665 - AluJb SINE Alu 0 312 2 24 0 0 0 chr1 29896933 29896957 -252296707 + AT_rich Low_complexity Low_complexity 1 24 0 2177 95 3 24 chr1 29897652 29897970 -252295694 - AluSp SINE Alu 0 312 1 1155 77 0 14 chr1 29897971 29898114 -252295550 - AluSq/x SINE Alu -171 141 1 239 118 79 13 chr1 29898133 29898209 -252295455 - L1ME4a LINE L1 0 6121 6041 712 194 0 0 chr1 29898650 29898774 -252294890 - FRAM SINE Alu -7 169 46 869 194 12 0 chr1 29898803 29898963 -252294701 + FRAM SINE Alu 9 170 -6 1751 183 0 28 chr1 29899017 29899307 -252294357 - AluJb SINE Alu -30 282 1 2252 116 0 0 chr1 29899309 29899603 -252294061 - AluSq SINE Alu -19 294 1 623 229 25 8 chr1 29899626 29899748 -252293916 - FLAM_C SINE Alu -18 125 2 2183 107 3 3 chr1 29900169 29900458 -252293206 - AluSc SINE Alu -12 297 9 1220 162 192 8 chr1 29900676 29900910 -252292754 - AluJb SINE Alu -35 277 1 218 358 73 9 chr1 29901061 29901170 -252292494 + MIR SINE MIR 36 151 -57 31 26 0 0 chr1 29901664 29901702 -252291962 + AT_rich Low_complexity Low_complexity 1 38 0 305 300 67 25 chr1 29902194 29902314 -252291350 + MIR SINE MIR 64 188 -74 2426 76 23 7 chr1 29902327 29902629 -252291035 + AluY SINE Alu 1 307 -4 2393 89 0 6 chr1 29902629 29902942 -252290722 + AluY SINE Alu 1 311 0 1960 78 0 8 chr1 29903108 29903350 -252290314 - AluSp SINE Alu -21 292 53 2338 94 16 3 chr1 29903388 29903697 -252289967 - AluSq SINE Alu 0 313 1 1850 66 9 0 chr1 29903848 29904074 -252289590 - AluY SINE Alu -1 310 83 261 0 0 0 chr1 29904085 29904114 -252289550 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1360 94 22 11 chr1 29904117 29904298 -252289366 - AluSg/x SINE Alu -25 285 103 27 29 0 0 chr1 29906531 29906565 -252287099 + AT_rich Low_complexity Low_complexity 1 34 0 315 269 91 60 chr1 29906602 29906945 -252286719 - L1ME LINE L1 -597 5573 5242 1912 119 48 14 chr1 29906945 29907239 -252286425 - AluSq SINE Alu -9 304 1 1899 161 0 0 chr1 29907241 29907533 -252286131 - AluJo SINE Alu -20 292 1 1335 189 124 0 chr1 29907534 29907799 -252285865 - AluJo SINE Alu -3 299 2 315 269 91 60 chr1 29907799 29907914 -252285750 - L1ME LINE L1 -928 5242 5132 1497 165 90 0 chr1 29907914 29908180 -252285484 + AluJo SINE Alu 1 290 -22 315 269 91 60 chr1 29908180 29908361 -252285303 - L1ME LINE L1 -1038 5132 4907 233 234 0 0 chr1 29909300 29909347 -252284317 + MIR SINE MIR 107 153 -109 214 182 23 0 chr1 29909457 29909501 -252284163 + MIR SINE MIR 170 214 -48 1691 155 93 48 chr1 29910115 29910514 -252283150 - MSTA LTR MaLR -11 417 1 215 323 0 16 chr1 29910630 29910692 -252282972 - L2 LINE L2 -186 3086 3026 2469 70 7 0 chr1 29911160 29911458 -252282206 + AluY SINE Alu 1 300 -11 306 284 113 28 chr1 29911505 29911646 -252282018 - L2 LINE L2 -299 2973 2821 199 235 39 0 chr1 29912144 29912195 -252281469 + MIR SINE MIR 93 145 -63 2085 91 12 63 chr1 29912220 29912539 -252281125 + AluSx SINE Alu 1 303 -9 378 232 63 11 chr1 29912940 29913035 -252280629 + MIR SINE MIR 48 147 -61 180 250 0 25 chr1 29913135 29913175 -252280489 + MIR SINE MIR 32 70 -192 724 131 31 17 chr1 29913345 29913571 -252280093 - AluJb SINE Alu -1 311 2 231 329 26 53 chr1 29913906 29913997 -252279667 + MER5A DNA MER1_type 18 110 -79 1806 181 10 0 chr1 29913997 29914295 -252279369 - AluJo SINE Alu -11 301 1 231 329 26 53 chr1 29914295 29914314 -252279350 + MER5A DNA MER1_type 110 128 -61 2407 101 0 0 chr1 29914314 29914620 -252279044 - AluSq SINE Alu -7 306 1 231 329 26 53 chr1 29914620 29914660 -252279004 + MER5A DNA MER1_type 128 165 -24 229 250 21 0 chr1 29914726 29914774 -252278890 - L2 LINE L2 -18 3254 3206 192 40 0 0 chr1 29916584 29916609 -252277055 + (CA)n Simple_repeat Simple_repeat 2 26 0 1923 109 4 0 chr1 29916882 29917139 -252276525 + AluSx SINE Alu 53 310 -2 573 268 81 77 chr1 29917139 29917193 -252276471 - MIR SINE MIR -8 254 202 2378 102 7 0 chr1 29917193 29917498 -252276166 - AluSp SINE Alu -6 307 1 573 268 81 77 chr1 29917498 29917693 -252275971 - MIR SINE MIR -60 202 1 1233 161 0 18 chr1 29917796 29918013 -252275651 - AluSx SINE Alu -98 214 2 974 264 62 52 chr1 29918013 29918371 -252275293 - L1M4 LINE L1 -1372 4774 4406 2079 105 3 69 chr1 29918371 29918705 -252274959 + AluSx SINE Alu 1 312 0 974 264 62 52 chr1 29918705 29918959 -252274705 - L1M4 LINE L1 -1740 4406 4156 415 295 55 49 chr1 29918966 29919149 -252274515 - MIR SINE MIR -76 186 3 307 265 15 0 chr1 29919302 29919370 -252274294 + MIR SINE MIR 47 115 -93 1141 224 123 41 chr1 29919376 29919715 -252273949 - L2 LINE L2 0 3313 3003 2298 125 0 0 chr1 29919715 29920026 -252273638 + AluSx SINE Alu 1 311 -1 1141 224 123 41 chr1 29920026 29920262 -252273402 - L2 LINE L2 -310 3003 2788 2455 100 0 0 chr1 29920262 29920572 -252273092 + AluSx SINE Alu 1 310 -2 1141 224 123 41 chr1 29920572 29920698 -252272966 - L2 LINE L2 -525 2788 2539 209 33 33 0 chr1 29920698 29920728 -252272936 + (TCTA)n Simple_repeat Simple_repeat 3 33 0 394 253 56 8 chr1 29920862 29920975 -252272689 + MIR SINE MIR 21 129 -79 2174 100 19 22 chr1 29920979 29921290 -252272374 - AluSp SINE Alu -3 310 1 230 246 199 12 chr1 29921292 29921463 -252272201 - L1MC5 LINE L1 -491 7470 7268 379 159 0 0 chr1 29921544 29921607 -252272057 - MLT1D LTR MaLR 0 505 443 782 175 6 73 chr1 29921610 29921787 -252271877 + FRAM SINE Alu 2 166 0 325 258 39 8 chr1 29921821 29921949 -252271715 + CT-rich Low_complexity Low_complexity 4 135 0 663 192 51 128 chr1 29922095 29922329 -252271335 + LTR33 LTR ERVL 1 216 -305 1470 109 0 199 chr1 29922371 29922728 -252270936 - AluSx SINE Alu -16 286 1 591 226 8 0 chr1 29922780 29922913 -252270751 - L1MC5 LINE L1 -519 7442 7309 1778 113 63 76 chr1 29922919 29923221 -252270443 - AluSx SINE Alu -14 298 1 427 129 14 0 chr1 29923224 29923294 -252270370 - L2 LINE L2 -771 2543 2473 249 128 0 21 chr1 29923299 29923346 -252270318 + MIR SINE MIR 119 164 -98 719 102 8 51 chr1 29923737 29923855 -252269809 - FLAM_C SINE Alu -1 142 30 2307 122 0 0 chr1 29924195 29924507 -252269157 + AluSx SINE Alu 1 312 0 412 237 136 0 chr1 29925032 29925150 -252268514 + L1MC5 LINE L1 7309 7442 -519 885 138 0 0 chr1 29925202 29925325 -252268339 + FLAM_C SINE Alu 1 123 -20 247 298 6 58 chr1 29925639 29925835 -252267829 + CT-rich Low_complexity Low_complexity 1 185 0 2066 142 0 6 chr1 29926285 29926596 -252267068 - AluJb SINE Alu -3 309 1 204 308 0 13 chr1 29926750 29926828 -252266836 + (TGG)n Simple_repeat Simple_repeat 2 78 0 426 259 167 12 chr1 29926858 29927020 -252266644 + MIR SINE MIR 70 256 -6 2117 71 48 4 chr1 29927545 29927837 -252265827 + AluSc SINE Alu 1 304 0 297 367 55 0 chr1 29927971 29928080 -252265584 + L2 LINE L2 3199 3313 0 506 248 23 8 chr1 29928097 29928230 -252265434 + MIR SINE MIR 16 150 -58 1450 172 3 134 chr1 29929090 29929433 -252264231 - AluSx SINE Alu -14 298 1 1802 145 3 61 chr1 29929458 29929769 -252263895 - AluJo SINE Alu -19 293 1 396 315 42 29 chr1 29929858 29930030 -252263634 - MIR3 SINE MIR -38 170 19 184 103 0 0 chr1 29930103 29930132 -252263532 - L2 LINE L2 0 3272 3244 474 269 113 12 chr1 29930167 29930327 -252263337 - MIR SINE MIR -65 197 22 2085 141 0 0 chr1 29930441 29930725 -252262939 + AluSx SINE Alu 1 284 -28 186 206 0 0 chr1 29931340 29931374 -252262290 - L2 LINE L2 -19 3294 3261 2278 114 0 0 chr1 29931419 29931716 -252261948 - AluSx SINE Alu -15 297 1 2434 87 7 0 chr1 29931729 29932038 -252261626 - AluY SINE Alu 0 311 1 1552 185 39 31 chr1 29932039 29932325 -252261339 - AluJo SINE Alu -14 298 11 208 156 0 0 chr1 29932347 29932379 -252261285 - MIR SINE MIR -114 148 117 299 367 143 5 chr1 29932485 29932681 -252260983 - L2 LINE L2 -5 3267 3045 740 230 28 115 chr1 29932688 29932738 -252260926 - MIR SINE MIR 0 262 209 2369 106 0 0 chr1 29932738 29933039 -252260625 - AluSx SINE Alu -11 301 1 740 230 28 115 chr1 29933039 29933275 -252260389 - MIR SINE MIR -53 209 1 733 135 0 10 chr1 29933519 29933623 -252260041 - FLAM_C SINE Alu -20 123 21 3936 164 22 69 chr1 29933654 29933727 -252259937 - L1MB2 LINE L1 -45 6138 6063 222 37 0 0 chr1 29933727 29933754 -252259910 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 3936 164 22 69 chr1 29933754 29933789 -252259875 - L1MB2 LINE L1 -120 6063 6028 2179 133 3 0 chr1 29933789 29934091 -252259573 + AluSx SINE Alu 1 303 -9 3936 164 22 69 chr1 29934091 29934487 -252259177 - L1MB2 LINE L1 -155 6028 5615 2554 44 0 41 chr1 29934487 29934806 -252258858 + AluY SINE Alu 2 307 -4 3936 164 22 69 chr1 29934806 29934818 -252258846 - L1MB2 LINE L1 -568 5615 5604 2299 102 23 0 chr1 29934818 29935123 -252258541 + AluSx SINE Alu 1 312 0 3936 164 22 69 chr1 29935123 29935765 -252257899 - L1MB2 LINE L1 -579 5604 4933 1861 179 3 3 chr1 29935765 29936062 -252257602 - AluJo SINE Alu -15 297 1 3936 164 22 69 chr1 29936062 29936073 -252257591 - L1MB2 LINE L1 -1250 4933 4923 2259 102 3 0 chr1 29936073 29936367 -252257297 - AluSx SINE Alu -17 295 1 3936 164 22 69 chr1 29936367 29936961 -252256703 - L1MB2 LINE L1 -1260 4923 4303 2532 61 0 0 chr1 29936961 29937255 -252256409 - AluY SINE Alu -17 294 1 3936 164 22 69 chr1 29937255 29937323 -252256341 - L1MB2 LINE L1 -1880 4303 4434 2415 96 3 10 chr1 29937323 29937637 -252256027 - AluSx SINE Alu 0 312 1 3936 164 22 69 chr1 29937637 29937713 -252255951 - L1MB2 LINE L1 -1748 4435 4357 202 250 300 12 chr1 29937732 29937812 -252255852 - MIR SINE MIR -62 146 44 383 293 18 42 chr1 29938047 29938214 -252255450 + MIR SINE MIR 36 198 -64 498 201 30 67 chr1 29939130 29939264 -252254400 - MIR SINE MIR -121 141 13 624 316 63 63 chr1 29939366 29939761 -252253903 - L2 LINE L2 -51 3221 2827 723 224 67 12 chr1 29939848 29939904 -252253760 - MER5A DNA MER1_type -7 182 131 2382 97 0 10 chr1 29939904 29940213 -252253451 - AluSx SINE Alu -6 306 1 723 224 67 12 chr1 29940213 29940321 -252253343 - MER5A DNA MER1_type -58 131 9 946 273 101 59 chr1 29940486 29940890 -252252774 + L2 LINE L2 2570 2956 -357 690 186 154 19 chr1 29940890 29941046 -252252618 - MER69A DNA AcHobo 0 177 1 946 273 101 59 chr1 29941046 29941111 -252252553 + L2 LINE L2 2956 3017 -296 840 159 0 43 chr1 29941111 29941249 -252252415 + AluJo/FLAM SINE Alu 2 133 -169 946 273 101 59 chr1 29941256 29941474 -252252190 + L2 LINE L2 3016 3312 -1 237 323 54 46 chr1 29941603 29941733 -252251931 - L2 LINE L2 -208 3064 2934 296 143 20 0 chr1 29942101 29942150 -252251514 - LTR16A LTR ERVL -6 444 395 696 150 53 9 chr1 29942222 29942335 -252251329 - FLAM_C SINE Alu -23 120 3 322 130 0 0 chr1 29942346 29942400 -252251264 - Alu SINE Alu -4 296 243 416 211 60 38 chr1 29942402 29942507 -252251157 - L1MC5 LINE L1 -244 7717 7605 1894 151 9 25 chr1 29942507 29942824 -252250840 - AluJo SINE Alu 0 312 1 416 211 60 38 chr1 29942824 29942903 -252250761 - L1MC5 LINE L1 -356 7605 7529 2140 101 42 0 chr1 29942914 29943201 -252250463 - AluSq SINE Alu -14 299 1 208 340 115 35 chr1 29943232 29943544 -252250120 + L2 LINE L2 1807 2143 -1171 798 355 55 28 chr1 29943546 29944047 -252249617 + L2 LINE L2 2307 2830 -484 2422 89 0 0 chr1 29944047 29944339 -252249325 - AluSg SINE Alu -18 292 1 798 355 55 28 chr1 29944339 29944476 -252249188 + L2 LINE L2 2830 2962 -352 698 182 241 16 chr1 29944810 29944828 -252248836 - MER96B DNA MER1_type? -107 310 297 2471 66 0 28 chr1 29944828 29945147 -252248517 + AluY SINE Alu 2 311 0 698 182 241 16 chr1 29945147 29945290 -252248374 - MER96B DNA MER1_type? -120 297 187 1915 127 3 84 chr1 29945290 29945622 -252248042 + AluSx SINE Alu 1 305 -7 698 182 241 16 chr1 29945622 29945712 -252247952 - MER96B DNA MER1_type? -230 187 1 2331 184 36 22 chr1 29946036 29946477 -252247187 - Charlie1 DNA MER1_type 0 2761 2310 2245 90 17 13 chr1 29946477 29946776 -252246888 - AluSq SINE Alu -12 301 2 2331 184 36 22 chr1 29946776 29946868 -252246796 - Charlie1 DNA MER1_type -451 2310 2221 1729 180 0 10 chr1 29946868 29947162 -252246502 - AluJb SINE Alu -9 303 13 300 269 47 125 chr1 29947170 29947249 -252246415 - L2 LINE L2 -224 3048 2964 2384 89 3 0 chr1 29947249 29947551 -252246113 + AluSg SINE Alu 1 303 -7 300 269 47 125 chr1 29947551 29947727 -252245937 - L2 LINE L2 -308 2964 2813 531 299 110 58 chr1 29947747 29947925 -252245739 + L2 LINE L2 2887 3054 -218 2262 113 3 3 chr1 29947925 29948227 -252245437 - AluSx SINE Alu -10 302 1 531 299 110 58 chr1 29948227 29948412 -252245252 + L2 LINE L2 3054 3269 -3 605 287 35 15 chr1 29948427 29948629 -252245035 + MIR SINE MIR 48 253 -9 1893 121 3 101 chr1 29948651 29948852 -252244812 - AluJb SINE Alu 0 312 158 2239 118 0 0 chr1 29948852 29949149 -252244515 - AluSg SINE Alu -13 297 1 1893 121 3 101 chr1 29949149 29949293 -252244371 - AluJb SINE Alu -154 158 1 1288 133 5 35 chr1 29949535 29949738 -252243926 - AluJo SINE Alu -109 203 7 349 244 83 65 chr1 29949763 29949931 -252243733 - L1ME4a LINE L1 -5 6116 5946 2069 142 0 16 chr1 29949985 29950301 -252243363 - AluSq SINE Alu -2 311 1 978 92 8 8 chr1 29950304 29950435 -252243229 - AluSq/x SINE Alu -179 133 3 234 203 145 14 chr1 29950489 29950558 -252243106 - HsTC2 DNA Tc2 -7 1891 1814 2070 141 0 22 chr1 29950560 29950879 -252242785 + AluJo SINE Alu 1 312 0 515 200 69 15 chr1 29950883 29951013 -252242651 - MLT1A1 LTR MaLR -58 307 171 656 137 0 10 chr1 29951075 29951177 -252242487 - AluJb SINE Alu -8 304 204 432 163 149 85 chr1 29951186 29951279 -252242385 - MLT1A1 LTR MaLR -215 150 44 2393 85 7 0 chr1 29951279 29951573 -252242091 + AluSp SINE Alu 1 296 -17 432 163 149 85 chr1 29951573 29951620 -252242044 - MLT1A1 LTR MaLR -321 44 1 2480 76 3 3 chr1 29953129 29953431 -252240233 + AluSc SINE Alu 5 306 -3 1045 104 0 0 chr1 29953870 29954004 -252239660 + AluSq/x SINE Alu 1 134 -178 1779 124 76 7 chr1 29954005 29954280 -252239384 + AluSx SINE Alu 13 306 -6 255 261 198 0 chr1 29954848 29954959 -252238705 + MIR SINE MIR 46 178 -84 299 203 14 14 chr1 29955389 29955458 -252238206 + MLT1K LTR MaLR 512 580 -8 660 219 57 31 chr1 29955488 29955716 -252237948 + MER113 DNA MER1_type? 3 236 -285 1795 154 3 46 chr1 29955722 29955850 -252237814 + AluJb SINE Alu 3 135 -177 2100 115 3 44 chr1 29955850 29956171 -252237493 + AluSx SINE Alu 5 312 0 1795 154 3 46 chr1 29956171 29956347 -252237317 + AluJb SINE Alu 135 294 -18 898 91 0 33 chr1 29956467 29956588 -252237076 + FLAM_C SINE Alu 14 130 -13 850 226 0 33 chr1 29956793 29956974 -252236690 - FAM SINE Alu 0 175 1 1406 108 10 5 chr1 29956976 29957204 -252236460 - AluY SINE Alu 0 311 98 314 206 176 76 chr1 29957710 29957841 -252235823 - MIR3 SINE MIR -3 205 62 534 151 0 0 chr1 29958292 29958398 -252235266 + (TCCA)n Simple_repeat Simple_repeat 2 107 0 247 315 63 16 chr1 29958410 29958537 -252235127 - MIR SINE MIR -6 256 124 437 113 16 0 chr1 29958539 29958601 -252235063 + U7 snRNA snRNA 1 63 0 485 288 44 13 chr1 29958725 29958934 -252234730 - MIR SINE MIR -53 209 2 478 313 8 0 chr1 29959373 29959501 -252234163 + L2 LINE L2 2941 3069 -244 2221 128 3 7 chr1 29959513 29959819 -252233845 + AluSx SINE Alu 1 305 -7 22 0 0 0 chr1 29959888 29959910 -252233754 + AT_rich Low_complexity Low_complexity 1 22 0 621 99 50 30 chr1 29959915 29960016 -252233648 + U6 snRNA snRNA 1 103 -4 23 0 0 0 chr1 29960016 29960039 -252233625 + AT_rich Low_complexity Low_complexity 1 23 0 276 222 87 3 chr1 29960065 29960152 -252233512 - MIR SINE MIR -83 125 23 241 265 0 60 chr1 29960213 29960296 -252233368 - MIR SINE MIR -65 143 66 2420 99 3 0 chr1 29960367 29960679 -252232985 - AluSp SINE Alu 0 313 1 271 270 55 32 chr1 29960806 29961015 -252232649 - L1ME3A LINE L1 -233 5937 5728 1956 143 0 0 chr1 29961057 29961337 -252232327 - AluSx SINE Alu -32 280 1 514 333 64 5 chr1 29961359 29961638 -252232026 - L1ME3A LINE L1 -456 5706 5412 1494 180 67 11 chr1 29961645 29961818 -252231846 - AluJo SINE Alu -11 301 139 243 0 0 0 chr1 29961818 29961845 -252231819 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 2074 121 4 4 chr1 29961845 29962125 -252231539 - AluSx SINE Alu -32 280 1 1494 180 67 11 chr1 29962125 29962234 -252231430 - AluJo SINE Alu -172 140 2 787 249 105 4 chr1 29962318 29962547 -252231117 + MIR SINE MIR 1 252 -10 921 120 0 0 chr1 29962554 29962679 -252230985 + FLAM_C SINE Alu 1 125 -8 183 80 0 0 chr1 29962731 29962756 -252230908 + (TTCC)n Simple_repeat Simple_repeat 4 28 0 2437 84 7 0 chr1 29962757 29963054 -252230610 - AluSc SINE Alu -10 299 1 912 181 184 6 chr1 29963335 29963642 -252230022 + L1MB3 LINE L1 5173 5534 -637 2206 108 0 16 chr1 29963642 29963948 -252229716 + AluY SINE Alu 1 301 -10 1112 173 6 0 chr1 29963971 29964150 -252229514 - FRAM SINE Alu -2 174 1 2572 155 78 28 chr1 29964150 29964320 -252229344 + L1MB3 LINE L1 5620 5780 -403 2001 147 3 3 chr1 29964320 29964620 -252229044 + AluJo SINE Alu 1 300 -12 1830 158 7 20 chr1 29964625 29964922 -252228742 + AluSx SINE Alu 5 297 -15 2572 155 78 28 chr1 29964922 29965282 -252228382 + L1MB3 LINE L1 5783 6183 0 3973 92 16 14 chr1 29965307 29965884 -252227780 + LTR8 LTR ERV1 1 578 -113 721 79 0 0 chr1 29965884 29965973 -252227691 + AluY SINE Alu 2 90 -221 347 289 141 0 chr1 29965973 29966101 -252227563 + MIR SINE MIR 57 202 -60 481 317 43 6 chr1 29966454 29966618 -252227046 + MIR SINE MIR 13 182 -80 472 185 0 12 chr1 29966631 29966712 -252226952 - FRAM/FAM SINE Alu -98 87 8 581 225 98 112 chr1 29966811 29966958 -252226706 + MLT1J LTR MaLR 20 168 -343 2702 169 24 62 chr1 29966958 29967199 -252226465 - MER34B LTR ERV1 0 565 316 2447 75 0 3 chr1 29967199 29967494 -252226170 - AluSq SINE Alu -19 294 1 2702 169 24 62 chr1 29967494 29967837 -252225827 - MER34B LTR ERV1 -249 316 3 581 225 98 112 chr1 29967837 29968045 -252225619 + MLT1J LTR MaLR 168 370 -141 407 232 29 22 chr1 29968128 29968266 -252225398 - LTR67 LTR ERVL -1 556 418 1052 167 29 1 chr1 29968812 29969014 -252224650 + LTR32 LTR ERVL 15 260 -211 3725 120 51 83 chr1 29969014 29969363 -252224301 - LTR8A LTR ERV1 -2 725 366 1984 164 10 6 chr1 29969363 29969674 -252223990 + AluJo SINE Alu 1 312 0 3725 120 51 83 chr1 29969674 29970073 -252223591 - LTR8A LTR ERV1 -361 366 1 1052 167 29 1 chr1 29970073 29970117 -252223547 + LTR32 LTR ERVL 260 301 -170 811 113 0 35 chr1 29970118 29970233 -252223431 - AluJ SINE Alu -14 298 188 3425 129 10 23 chr1 29970314 29970710 -252222954 + MER41E LTR ERV1 1 390 -122 2010 156 0 0 chr1 29970710 29970999 -252222665 - AluSx SINE Alu -23 289 1 3425 129 10 23 chr1 29970999 29971121 -252222543 + MER41E LTR ERV1 390 512 0 872 184 0 112 chr1 29971123 29971181 -252222483 - AluJ SINE Alu -121 191 128 2552 54 10 0 chr1 29971181 29971479 -252222185 - AluY SINE Alu -4 307 7 872 184 0 112 chr1 29971479 29971626 -252222038 - AluJ SINE Alu -184 128 9 266 294 0 0 chr1 29971657 29971725 -252221939 - MLT1H LTR MaLR -470 79 12 386 219 110 0 chr1 29971955 29972037 -252221627 + L2 LINE L2 3218 3308 -5 324 246 70 13 chr1 29972095 29972220 -252221444 + MIR SINE MIR 3 130 -78 1027 241 68 21 chr1 29972610 29972832 -252220832 + MIR SINE MIR 13 248 -14 324 0 0 0 chr1 29972840 29972876 -252220788 + (TG)n Simple_repeat Simple_repeat 1 36 0 2260 103 0 0 chr1 29972876 29973157 -252220507 - AluSx SINE Alu -28 284 1 1027 241 68 21 chr1 29973157 29973170 -252220494 + MIR SINE MIR 248 259 -3 2417 67 0 51 chr1 29973818 29974134 -252219530 - AluSg SINE Alu -10 300 1 1195 93 17 0 chr1 29974283 29974455 -252219209 + L1PA11 LINE L1 6000 6174 0 400 327 115 5 chr1 29974867 29975075 -252218589 + MIR SINE MIR 20 250 -12 559 284 35 15 chr1 29975146 29975343 -252218321 + MIR SINE MIR 51 251 -11 331 313 18 0 chr1 29975436 29975577 -252218087 - L1ME LINE L1 -529 5592 5450 543 298 41 37 chr1 29976255 29976473 -252217191 + MIR SINE MIR 44 262 0 * 640 202 161 57 chr1 29976457 29976563 -252217101 - MIR SINE MIR 0 262 168 2394 90 0 3 chr1 29976563 29976864 -252216800 + AluSg1 SINE Alu 1 300 -9 640 202 161 57 chr1 29976864 29976950 -252216714 - MIR SINE MIR -94 168 50 343 271 85 65 chr1 29977357 29977556 -252216108 + L2 LINE L2 3095 3297 -16 2580 73 0 0 chr1 29977557 29977857 -252215807 + AluSq SINE Alu 1 300 -13 207 0 0 0 chr1 29977857 29977880 -252215784 + (CATA)n Simple_repeat Simple_repeat 2 24 0 287 146 0 0 chr1 29977888 29977929 -252215735 + Alu SINE Alu 1 41 -262 381 93 0 0 chr1 29977948 29978002 -252215662 + AluS SINE Alu 23 76 -227 2126 113 55 0 chr1 29978057 29978350 -252215314 - AluSq SINE Alu -4 309 1 2553 53 0 0 chr1 29978459 29978762 -252214902 + AluY SINE Alu 1 303 -8 636 246 86 21 chr1 29979089 29979276 -252214388 + L2 LINE L2 2524 2722 -592 733 187 45 58 chr1 29979282 29979375 -252214289 + FRAM SINE Alu 1 93 -209 2505 84 0 0 chr1 29979375 29979684 -252213980 - AluY SINE Alu -2 309 1 733 187 45 58 chr1 29979684 29979745 -252213919 + FRAM SINE Alu 93 153 -13 1211 197 5 0 chr1 29979757 29979980 -252213684 + AluJo SINE Alu 87 310 -2 1973 148 0 0 chr1 29980027 29980329 -252213335 + AluJb SINE Alu 5 306 0 186 247 240 68 chr1 29980329 29980475 -252213189 + L2 LINE L2 2737 2907 -407 586 246 15 0 chr1 29980483 29980612 -252213052 + MER2 DNA MER2_type 1 131 -214 268 170 0 0 chr1 29980612 29980659 -252213005 + Tigger1 DNA MER2_type 1 47 -2371 1856 156 0 7 chr1 29980660 29980955 -252212709 - AluJo SINE Alu -19 293 1 2483 57 0 0 chr1 29980985 29981283 -252212381 + AluY SINE Alu 1 298 -13 2409 91 0 0 chr1 29981920 29982228 -252211436 - AluSc SINE Alu -1 308 1 665 139 0 70 chr1 29982861 29982976 -252210688 - FLAM_C SINE Alu -35 108 2 2431 78 5 101 chr1 29982977 29983055 -252210609 + Tigger1 DNA MER2_type 1442 1526 -892 2171 129 0 13 chr1 29983055 29983366 -252210298 - AluSx SINE Alu -5 307 1 2431 78 5 101 chr1 29983366 29983725 -252209939 + Tigger1 DNA MER2_type 1526 1837 -581 1295 178 9 9 chr1 29983725 29983944 -252209720 - AluSx SINE Alu -93 219 1 928 117 0 0 chr1 29983944 29984081 -252209583 + Tigger1 DNA MER2_type 1823 1959 -459 1717 147 14 35 chr1 29984081 29984366 -252209298 - AluJb SINE Alu -10 302 24 2576 77 3 0 chr1 29984398 29984710 -252208954 - AluSp SINE Alu 0 313 1 1257 57 0 0 chr1 29984710 29984869 -252208795 - L1P5 LINE L1 -364 5787 5629 223 191 0 111 chr1 29984869 29984932 -252208732 + L2 LINE L2 3037 3092 -180 215 244 35 70 chr1 29985003 29985089 -252208575 + MIR SINE MIR 13 95 -167 302 244 13 13 chr1 29985339 29985417 -252208247 + MLT1K LTR MaLR 149 226 -362 2356 98 3 0 chr1 29985536 29985841 -252207823 + AluSq SINE Alu 1 306 -7 534 216 317 5 chr1 29985858 29986057 -252207607 + MLT1K LTR MaLR 328 588 0 721 206 0 8 chr1 29986082 29986208 -252207456 + FLAM_A SINE Alu 1 125 -8 426 204 83 83 chr1 29986234 29986299 -252207365 + MLT1L LTR MaLR 397 461 -154 2264 115 0 0 chr1 29986299 29986594 -252207070 + AluSx SINE Alu 1 295 -17 426 204 83 83 chr1 29986594 29986685 -252206979 + MLT1L LTR MaLR 460 553 -62 256 146 0 0 chr1 29986713 29986754 -252206910 - U6 snRNA snRNA -2 105 65 517 126 0 58 chr1 29986754 29986841 -252206823 + AluSg/x SINE Alu 211 292 -20 673 111 178 72 chr1 29986847 29986892 -252206772 - L1MB7 LINE L1 -20 6164 6125 1986 157 0 19 chr1 29986892 29987205 -252206459 - AluJb SINE Alu -1 311 5 673 111 178 72 chr1 29987205 29987339 -252206325 - L1MB7 LINE L1 -59 6125 5966 791 219 70 0 chr1 29987347 29987575 -252206089 - L1M4 LINE L1 -2073 4073 3830 2210 134 0 13 chr1 29987726 29988040 -252205624 - AluSx SINE Alu -2 310 1 1571 182 24 156 chr1 29988078 29988410 -252205254 + MER34 LTR ERV1 1 375 -167 2270 105 17 0 chr1 29988410 29988705 -252204959 - AluSq SINE Alu -13 300 1 1571 182 24 156 chr1 29988705 29988941 -252204723 + MER34 LTR ERV1 375 483 -59 2506 94 0 0 chr1 29988941 29989250 -252204414 + AluSx SINE Alu 1 309 -3 1571 182 24 156 chr1 29989250 29989301 -252204363 + MER34 LTR ERV1 483 539 -3 1044 145 45 0 chr1 29989959 29990138 -252203526 + MER5A DNA MER1_type 1 187 -2 449 234 0 24 chr1 29990193 29990317 -252203347 + LTR67 LTR ERVL 434 554 -3 186 43 0 0 chr1 29990733 29990756 -252202908 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 868 212 0 0 chr1 29990758 29990904 -252202760 - AluJo/FRAM SINE Alu -19 283 138 1191 183 89 0 chr1 29990904 29991117 -252202547 - AluJb SINE Alu -76 236 5 515 267 147 77 chr1 29991228 29991617 -252202047 - MLT1J LTR MaLR -95 416 1 457 226 8 75 chr1 29991641 29991774 -252201890 - MER102b DNA MER1_type 0 341 218 383 242 153 68 chr1 29991900 29992148 -252201516 + MLT1L LTR MaLR 192 460 -155 2097 150 0 3 chr1 29992556 29992869 -252200795 - AluSx SINE Alu 0 312 1 2079 90 0 59 chr1 29993174 29993463 -252200201 + AluSg SINE Alu 1 272 -38 296 188 35 238 chr1 29993476 29993646 -252200018 - L1ME LINE L1 -303 5818 5716 1888 122 45 10 chr1 29993646 29993934 -252199730 - AluSx SINE Alu -14 298 1 296 188 35 238 chr1 29993934 29994019 -252199645 - L1ME LINE L1 -405 5716 5615 185 351 40 0 chr1 29994155 29994229 -252199435 - L2 LINE L2 -93 3179 3103 1371 229 128 55 chr1 29994230 29994761 -252198903 + MLT1E LTR MaLR 1 567 0 625 225 73 53 chr1 29994994 29995145 -252198519 + MER69A DNA AcHobo 2 155 -22 286 309 21 0 chr1 29995272 29995366 -252198298 - L3b LINE CR1 -349 1234 1139 2269 112 3 3 chr1 29995368 29995681 -252197983 - AluSp SINE Alu 0 313 1 281 279 57 29 chr1 29996041 29996141 -252197523 - MIR SINE MIR -6 256 149 2179 113 0 25 chr1 29996141 29996459 -252197205 - AluSx SINE Alu -2 310 1 281 279 57 29 chr1 29996459 29996498 -252197166 - MIR SINE MIR -113 149 113 325 242 55 0 chr1 29996899 29996949 -252196715 - MIR SINE MIR 0 262 216 378 0 0 0 chr1 29996949 29996991 -252196673 + (CA)n Simple_repeat Simple_repeat 2 43 0 325 242 55 0 chr1 29996991 29997031 -252196633 - MIR SINE MIR -46 216 167 181 339 0 0 chr1 29997102 29997164 -252196500 + MIR SINE MIR 118 179 -83 273 284 72 82 chr1 29997588 29997782 -252195882 + MIR SINE MIR 33 224 -38 1993 135 13 26 chr1 29998300 29998612 -252195052 - AluJb SINE Alu -4 308 1 2427 86 0 0 chr1 29998668 29998960 -252194704 - AluSg SINE Alu -18 292 1 350 274 59 15 chr1 29998992 29999127 -252194537 - L1MC4 LINE L1 -371 7671 7531 1935 147 19 51 chr1 29999153 29999274 -252194390 - L1MB4 LINE L1 0 6180 6057 2442 82 7 0 chr1 29999274 29999568 -252194096 - AluSc SINE Alu -13 296 1 1935 147 19 51 chr1 29999568 29999820 -252193844 - L1MB4 LINE L1 -123 6057 5819 2309 107 3 0 chr1 29999830 30000129 -252193535 - AluSx SINE Alu -12 300 1 2610 47 0 0 chr1 30000633 30000930 -252192734 - AluY SINE Alu -14 297 1 1967 137 41 0 chr1 30001102 30001394 -252192270 - AluSq SINE Alu -9 304 1 2070 128 13 7 chr1 30001548 30001852 -252191812 - AluSx SINE Alu -6 306 1 184 182 0 0 chr1 30001865 30001898 -252191766 - MIR SINE MIR -115 147 115 2402 76 6 22 chr1 30001899 30002214 -252191450 + AluSp SINE Alu 1 310 -3 361 254 55 9 chr1 30002218 30002332 -252191332 - MIR SINE MIR -79 129 21 2136 142 0 0 chr1 30002453 30002755 -252190909 - AluSx SINE Alu -10 302 1 2245 94 3 17 chr1 30002839 30003137 -252190527 - AluSx SINE Alu -18 294 1 567 165 6 114 chr1 30003716 30003783 -252189881 - Charlie1 DNA MER1_type 0 2761 2719 2289 90 0 53 chr1 30003783 30004105 -252189559 + AluSx SINE Alu 1 305 -7 567 165 6 114 chr1 30004105 30004195 -252189469 - Charlie1 DNA MER1_type -42 2719 2621 * 1105 193 58 5 chr1 30004183 30004406 -252189258 - Charlie1 DNA MER1_type -2526 235 1 2057 104 14 0 chr1 30004437 30004716 -252188948 + AluSx SINE Alu 30 312 0 219 69 0 0 chr1 30004716 30004745 -252188919 + (GGAGAA)n Simple_repeat Simple_repeat 1 29 0 1837 147 44 3 chr1 30004802 30005095 -252188569 - AluSx SINE Alu -7 305 1 2204 113 0 0 chr1 30005147 30005458 -252188206 + AluSq SINE Alu 1 311 0 244 179 0 46 chr1 30005733 30005798 -252187866 + L2 LINE L2 3133 3234 -79 1401 182 6 88 chr1 30005802 30006132 -252187532 - AluJo SINE Alu -9 303 1 1896 239 108 6 chr1 30007780 30008281 -252185383 + MLT1H1 LTR MaLR 1 552 -3 2033 128 10 7 chr1 30008399 30008697 -252184967 - AluSx SINE Alu -12 300 2 3640 133 19 18 chr1 30009108 30009444 -252184220 - L1MB2 LINE L1 -4 6167 5828 2289 98 7 0 chr1 30009444 30009730 -252183934 - AluSc SINE Alu -19 290 3 3640 133 19 18 chr1 30009730 30010023 -252183641 - L1MB2 LINE L1 -343 5828 5537 1953 129 26 23 chr1 30010238 30010547 -252183117 - AluSx SINE Alu -2 310 1 2257 83 0 24 chr1 30010555 30010879 -252182785 - AluSc SINE Alu 0 317 1 1834 133 97 13 chr1 30010981 30011290 -252182374 + MER7A DNA MER2_type 2 334 -12 1064 248 166 24 chr1 30011435 30012011 -252181653 - L2 LINE L2 -5 3308 2599 2087 110 31 0 chr1 30012011 30012303 -252181361 + AluSx SINE Alu 1 301 -11 1064 248 166 24 chr1 30012303 30012467 -252181197 - L2 LINE L2 -714 2599 2460 750 168 87 38 chr1 30012469 30012663 -252181001 + MER69 DNA AcHobo 2205 2461 -65 1162 131 145 102 chr1 30012663 30012946 -252180718 - AluJo SINE Alu -7 295 1 750 168 87 38 chr1 30012946 30013016 -252180648 + MER69 DNA AcHobo 2461 2526 0 2131 85 21 3 chr1 30013160 30013443 -252180221 + AluSx SINE Alu 14 301 -11 2635 37 3 0 chr1 30013448 30013745 -252179919 + AluSp SINE Alu 5 302 -11 1436 163 133 4 chr1 30016271 30016535 -252177129 + AluJo SINE Alu 1 298 -14 252 0 0 0 chr1 30016966 30016994 -252176670 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 205 247 10 31 chr1 30017147 30017244 -252176420 + T-rich Low_complexity Low_complexity 1 95 0 183 42 0 0 chr1 30017271 30017295 -252176369 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1613 164 11 4 chr1 30017316 30017578 -252176086 - AluJb SINE Alu -40 272 9 2078 93 7 4 chr1 30017877 30018157 -252175507 + AluSx SINE Alu 32 312 0 360 0 0 0 chr1 30018158 30018198 -252175466 + (TA)n Simple_repeat Simple_repeat 2 41 0 889 171 38 67 chr1 30019113 30019220 -252174444 - MIR SINE MIR 0 262 153 2424 85 0 0 chr1 30019220 30019515 -252174149 - AluSg SINE Alu -15 295 1 889 171 38 67 chr1 30019515 30019647 -252174017 - MIR SINE MIR -109 153 30 2364 73 3 22 chr1 30021698 30022011 -252171653 + AluSq SINE Alu 1 307 -6 676 147 29 143 chr1 30022101 30022273 -252171391 + MER112 DNA MER1_type 2 141 -119 1916 141 0 44 chr1 30022273 30022592 -252171072 - AluJb SINE Alu -7 305 1 676 147 29 143 chr1 30022592 30022657 -252171007 + MER112 DNA MER1_type 141 212 -48 1007 97 0 15 chr1 30022825 30022959 -252170705 + FLAM_C SINE Alu 1 132 -1 386 154 0 0 chr1 30023586 30023651 -252170013 - MIR SINE MIR -10 252 188 690 225 39 28 chr1 30023858 30024040 -252169624 + MIR SINE MIR 14 197 -65 1069 154 17 11 chr1 30024042 30024217 -252169447 + AluSg/x SINE Alu 133 308 -4 319 229 0 0 chr1 30024218 30024288 -252169376 + MIR SINE MIR 191 260 -2 21 0 0 0 chr1 30024644 30024665 -252168999 + AT_rich Low_complexity Low_complexity 1 21 0 2334 88 7 7 chr1 30025355 30025650 -252168014 + AluSx SINE Alu 7 301 -11 2443 85 3 3 chr1 30025714 30026021 -252167643 + AluSp SINE Alu 1 307 -6 192 179 0 0 chr1 30026050 30026089 -252167575 + T-rich Low_complexity Low_complexity 1 39 0 2501 73 3 0 chr1 30026775 30027078 -252166586 - AluSp SINE Alu -9 304 1 878 204 0 0 chr1 30027105 30027252 -252166412 - FRAM SINE Alu -15 161 15 1108 118 7 0 chr1 30027309 30027461 -252166203 + AluSx SINE Alu 1 153 -159 2339 112 0 13 chr1 30028056 30028233 -252165431 - AluSq SINE Alu -3 310 137 1954 157 0 7 chr1 30028233 30028533 -252165131 - AluSx SINE Alu -14 298 1 2339 112 0 13 chr1 30028533 30028669 -252164995 - AluSq SINE Alu -176 137 1 402 146 135 0 chr1 30028670 30028766 -252164898 + L1ME1 LINE L1 6049 6157 -9 324 190 51 38 chr1 30029282 30029361 -252164303 + MLT1B LTR MaLR 287 366 -24 2245 94 3 17 chr1 30030084 30030382 -252163282 + AluSx SINE Alu 1 294 -18 2284 128 0 0 chr1 30030466 30030779 -252162885 + AluSq SINE Alu 1 313 0 1687 147 14 35 chr1 30030811 30031096 -252162568 + AluJb SINE Alu 24 302 -10 983 117 0 0 chr1 30031096 30031233 -252162431 - Tigger1 DNA MER2_type -459 1959 1823 1271 178 9 9 chr1 30031233 30031452 -252162212 + AluSx SINE Alu 1 219 -93 2586 75 5 101 chr1 30031452 30031811 -252161853 - Tigger1 DNA MER2_type -581 1837 1526 2140 129 0 13 chr1 30031811 30032122 -252161542 + AluSx SINE Alu 1 307 -5 2586 75 5 101 chr1 30032122 30032200 -252161464 - Tigger1 DNA MER2_type -892 1526 1442 634 139 0 70 chr1 30032201 30032316 -252161348 + FLAM_C SINE Alu 2 108 -35 385 299 47 97 chr1 30033026 30033427 -252160237 + L2 LINE L2 2871 3251 -21 204 97 0 0 chr1 30033430 30033461 -252160203 + (TTG)n Simple_repeat Simple_repeat 2 32 0 306 208 40 28 chr1 30033492 30033591 -252160073 + MIR SINE MIR 68 167 -41 320 291 146 48 chr1 30033757 30034052 -252159612 + L2 LINE L2 2432 2755 -559 220 240 13 80 chr1 30034119 30034194 -252159470 - MIR SINE MIR -99 163 94 195 226 19 0 chr1 30034298 30034351 -252159313 + L2 LINE L2 2920 2973 -299 444 250 65 18 chr1 30034869 30035037 -252158627 + HERVL LTR ERVL 4669 4844 -810 317 295 33 41 chr1 30035161 30035283 -252158381 + HERVL LTR ERVL 5038 5158 -496 293 302 11 44 chr1 30036009 30036191 -252157473 + CT-rich Low_complexity Low_complexity 1 176 0 270 291 159 33 chr1 30037517 30037668 -252155996 - LTR67 LTR ERVL -32 525 356 990 100 0 14 chr1 30037876 30037889 -252155775 - L1PA10 LINE L1 -9 6159 6147 198 0 0 0 chr1 30037889 30037911 -252155753 + (TTTAA)n Simple_repeat Simple_repeat 1 22 0 990 100 0 14 chr1 30037911 30038037 -252155627 - L1PA10 LINE L1 -21 6147 6022 329 216 72 45 chr1 30038625 30038736 -252154928 + L2 LINE L2 3159 3272 0 574 285 6 13 chr1 30038806 30038964 -252154700 + MER5B DNA MER1_type 1 157 -21 347 309 78 37 chr1 30039035 30039252 -252154412 + L2 LINE L2 2839 3064 -208 297 265 8 76 chr1 30039648 30039780 -252153884 - MIR SINE MIR -112 150 28 529 276 67 91 chr1 30039804 30040014 -252153650 + L2 LINE L2 3068 3272 0 1591 116 167 8 chr1 30040350 30040608 -252153056 - AluSg SINE Alu -1 299 1 4602 218 30 36 chr1 30041314 30042420 -252151244 + L1M4 LINE L1 107 1205 -5337 405 157 0 0 chr1 30042457 30042527 -252151137 + FAM SINE Alu 111 180 -5 269 130 0 0 chr1 30042527 30042573 -252151091 + L1M4 LINE L1 1203 1248 -5298 481 230 40 0 chr1 30042587 30042687 -252150977 - MLT1B LTR MaLR 0 390 287 2783 170 77 66 chr1 30043203 30043301 -252150363 - L1ME1 LINE L1 -9 6157 6062 2279 110 0 13 chr1 30043301 30043437 -252150227 + AluSx SINE Alu 1 137 -175 1987 150 0 7 chr1 30043437 30043737 -252149927 + AluSx SINE Alu 1 298 -14 2279 110 0 13 chr1 30043737 30043908 -252149756 + AluSx SINE Alu 137 304 -8 225 0 0 0 chr1 30043908 30043933 -252149731 + (TA)n Simple_repeat Simple_repeat 2 26 0 2783 170 77 66 chr1 30043933 30044545 -252149119 - L1ME1 LINE L1 -103 6063 5438 560 181 0 0 chr1 30044675 30044780 -252148884 - L1MD3 LINE L1 -160 7835 7731 2161 121 0 3 chr1 30045813 30046111 -252147553 + AluSx SINE Alu 1 297 -15 2248 96 3 7 chr1 30046457 30046758 -252146906 - AluSx SINE Alu -12 300 1 1246 205 198 36 chr1 30046894 30047308 -252146356 - MLT1D LTR MaLR 0 505 25 185 248 10 30 chr1 30047366 30047467 -252146197 + CT-rich Low_complexity Low_complexity 6 104 0 399 150 230 26 chr1 30047472 30047585 -252146079 - FAM SINE Alu 0 175 40 1676 122 12 4 chr1 30047627 30047872 -252145792 + AluSx SINE Alu 1 247 -65 207 0 0 0 chr1 30047882 30047905 -252145759 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1962 135 9 31 chr1 30047932 30048251 -252145413 + AluSx SINE Alu 1 312 0 336 185 87 54 chr1 30048379 30048471 -252145193 + MER57A LTR ERV1 295 389 -14 23 0 0 0 chr1 30048553 30048576 -252145088 + AT_rich Low_complexity Low_complexity 1 23 0 2171 71 18 11 chr1 30048685 30048966 -252144698 - AluSq SINE Alu -14 299 17 206 333 120 0 chr1 30049036 30049153 -252144511 + MIR3 SINE MIR 35 165 -43 22 0 0 0 chr1 30050461 30050483 -252143181 + AT_rich Low_complexity Low_complexity 1 22 0 568 121 26 43 chr1 30050645 30050704 -252142960 - L1MB4 LINE L1 0 6180 6122 3115 176 66 43 chr1 30050704 30051010 -252142654 + MER44D DNA MER2_type 3 301 -2186 2263 89 7 20 chr1 30051010 30051313 -252142351 - AluSg SINE Alu -11 299 1 3115 176 66 43 chr1 30051313 30051475 -252142189 + MER44D DNA MER2_type 301 367 -2120 2200 91 35 0 chr1 30051475 30051762 -252141902 + AluSc SINE Alu 1 297 -12 3115 176 66 43 chr1 30051762 30052007 -252141657 + MER44D DNA MER2_type 367 605 0 568 121 26 43 chr1 30052007 30052063 -252141601 - L1MB4 LINE L1 -58 6122 6067 426 288 25 66 chr1 30052100 30052249 -252141415 + MIR SINE MIR 67 208 -54 877 149 0 8 chr1 30052249 30052383 -252141281 + FLAM_A SINE Alu 1 133 0 426 288 25 66 chr1 30052383 30052431 -252141233 + MIR SINE MIR 208 256 -6 227 114 23 0 chr1 30052588 30052632 -252141032 - Alu SINE Alu -4 295 251 183 42 0 0 chr1 30052633 30052657 -252141007 + (TA)n Simple_repeat Simple_repeat 1 24 0 180 0 0 0 chr1 30052656 30052676 -252140988 + (GA)n Simple_repeat Simple_repeat 2 21 0 * 1958 146 30 0 chr1 30053388 30053683 -252139981 + AluSx SINE Alu 1 304 -8 40 0 0 0 chr1 30053705 30053745 -252139919 + AT_rich Low_complexity Low_complexity 1 40 0 1989 127 10 36 chr1 30054010 30054317 -252139347 - AluSx SINE Alu -13 299 1 324 0 0 0 chr1 30054342 30054378 -252139286 + (CA)n Simple_repeat Simple_repeat 2 37 0 22 35 0 0 chr1 30054980 30055009 -252138655 + AT_rich Low_complexity Low_complexity 1 29 0 2606 49 0 0 chr1 30055139 30055444 -252138220 + AluY SINE Alu 3 307 -4 2206 96 0 0 chr1 30056001 30056302 -252137362 - AluSc SINE Alu 0 301 1 2159 98 7 0 chr1 30057035 30057320 -252136344 + AluSx SINE Alu 19 305 -7 22 70 0 0 chr1 30059486 30059529 -252134135 + AT_rich Low_complexity Low_complexity 1 43 0 25 31 0 0 chr1 30059872 30059904 -252133760 + AT_rich Low_complexity Low_complexity 1 32 0 1120 237 42 48 chr1 30060530 30060885 -252132779 - MER74B LTR ERVL -59 563 211 336 151 0 0 chr1 30060921 30060974 -252132690 - MER74B LTR ERVL -569 53 1 2298 104 0 13 chr1 30061265 30061573 -252132091 + AluSx SINE Alu 1 304 -8 363 357 21 14 chr1 30061966 30062106 -252131558 - L3 LINE CR1 -1229 348 208 1360 152 44 12 chr1 30062167 30062417 -252131247 - AluJb SINE Alu -12 300 43 229 350 0 38 chr1 30062422 30062502 -252131162 - L3 LINE CR1 -1413 164 88 249 242 65 0 chr1 30063431 30063493 -252130171 - MIR SINE MIR -89 173 108 534 210 7 14 chr1 30063703 30063841 -252129823 - L1MB7 LINE L1 0 6184 6048 1481 181 4 0 chr1 30063857 30064105 -252129559 - AluJo SINE Alu -5 307 59 2069 100 0 0 chr1 30064105 30064374 -252129290 - AluSg1 SINE Alu -40 269 1 2919 189 53 42 chr1 30064405 30064732 -252128932 - L1M4 LINE L1 -1100 5046 4724 2052 120 23 7 chr1 30064732 30065032 -252128632 + AluSx SINE Alu 1 305 -7 2919 189 53 42 chr1 30065032 30065325 -252128339 - L1M4 LINE L1 -1422 4724 4410 2084 118 4 0 chr1 30065325 30065630 -252128034 - AluSx SINE Alu 0 306 1 2919 189 53 42 chr1 30065630 30065862 -252127802 - L1M4 LINE L1 -1736 4410 4182 185 0 40 0 chr1 30066337 30066362 -252127302 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 1936 135 0 30 chr1 30066534 30066860 -252126804 + AluSx SINE Alu 1 317 0 673 225 0 52 chr1 30067261 30067434 -252126230 - L1MC3 LINE L1 -1459 6326 6163 353 296 74 17 chr1 30067436 30067612 -252126052 - L1M4 LINE L1 -953 5193 5008 288 348 11 0 chr1 30068862 30068951 -252124713 - L2 LINE L2 -2 3270 3181 2520 59 0 3 chr1 30069098 30069403 -252124261 + AluY SINE Alu 2 305 -6 263 360 54 11 chr1 30069503 30069689 -252123975 + L2 LINE L2 820 1013 -2301 1376 126 20 0 chr1 30069694 30069892 -252123772 + AluSg/x SINE Alu 92 293 -19 1517 166 60 33 chr1 30069903 30070205 -252123459 + AluJo SINE Alu 1 310 -2 903 307 123 22 chr1 30070221 30070758 -252122906 + L2 LINE L2 1039 1629 -1685 2168 142 72 2 chr1 30070759 30071161 -252122503 - L1MB3 LINE L1 -1 6182 5753 230 346 47 9 chr1 30071667 30071774 -252121890 - MER5A DNA MER1_type -67 122 1 2004 141 7 0 chr1 30071965 30072263 -252121401 + AluJb SINE Alu 1 300 -12 871 257 60 16 chr1 30072578 30072827 -252120837 - MIR SINE MIR -1 261 2 243 0 0 0 chr1 30073164 30073191 -252120473 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2101 129 0 0 chr1 30073193 30073480 -252120184 - AluSx SINE Alu -25 287 1 449 186 0 0 chr1 30073602 30073688 -252119976 + L1MA7 LINE L1 6066 6151 -140 270 26 0 0 chr1 30073728 30073766 -252119898 + L1MA7 LINE L1 6225 6262 -29 2439 79 0 0 chr1 30073895 30074187 -252119477 + AluSg SINE Alu 3 294 -16 611 253 43 43 chr1 30074873 30075059 -252118605 - MER5A DNA MER1_type -2 187 2 723 176 0 0 chr1 30075228 30075347 -252118317 + FLAM_C SINE Alu 3 121 -22 212 0 36 0 chr1 30075347 30075375 -252118289 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 1397 103 0 0 chr1 30075456 30075641 -252118023 - AluSg/x SINE Alu -3 307 123 2232 125 0 0 chr1 30075641 30075954 -252117710 - AluSq SINE Alu 0 313 1 978 282 249 47 chr1 30075956 30076896 -252116768 + L2 LINE L2 1494 2623 -691 24 77 0 0 chr1 30078252 30078304 -252115360 + AT_rich Low_complexity Low_complexity 1 52 0 2152 102 26 13 chr1 30078572 30078876 -252114788 - AluSq SINE Alu -5 308 1 243 167 0 37 chr1 30079032 30079086 -252114578 + L1MC4a LINE L1 5886 5937 -1871 21 36 0 0 chr1 30079269 30079297 -252114367 + AT_rich Low_complexity Low_complexity 1 28 0 255 325 193 28 chr1 30079669 30080093 -252113571 + L2 LINE L2 2483 2976 -338 2262 102 0 0 chr1 30080922 30081216 -252112448 + AluSx SINE Alu 1 294 -18 23 86 0 0 chr1 30082189 30082247 -252111417 + AT_rich Low_complexity Low_complexity 1 58 0 1069 123 13 0 chr1 30082969 30083124 -252110540 - AluSx SINE Alu -155 157 1 1727 99 8 36 chr1 30083130 30083410 -252110254 + AluSx SINE Alu 54 312 0 499 210 142 45 chr1 30083993 30084169 -252109495 - MIR SINE MIR -53 209 17 745 283 92 0 chr1 30084506 30084789 -252108875 + L1ME4a LINE L1 5579 5887 -234 2182 141 6 0 chr1 30084852 30085165 -252108499 + 7SLRNA srpRNA srpRNA 1 315 -5 1855 159 21 0 chr1 30086446 30086729 -252106935 + AluJb SINE Alu 1 289 -23 2209 110 3 10 chr1 30087138 30087439 -252106225 + AluSq SINE Alu 1 299 -14 583 131 12 0 chr1 30087951 30088035 -252105629 - AluJ/FLAM SINE Alu -226 86 2 220 353 86 9 chr1 30088200 30088316 -252105348 - L2 LINE L2 -5 3267 3143 713 204 13 25 chr1 30088347 30088504 -252105160 - MER5A DNA MER1_type 0 189 35 419 239 154 34 chr1 30088623 30088740 -252104924 + MIR3 SINE MIR 37 167 -41 734 198 0 0 chr1 30089608 30089724 -252103940 + FLAM_C SINE Alu 2 117 -16 535 212 4 91 chr1 30090395 30090456 -252103208 - MLT1F1 LTR MaLR 0 654 589 2241 115 0 0 chr1 30090456 30090752 -252102912 + AluSx SINE Alu 1 296 -16 535 212 4 91 chr1 30090752 30090828 -252102836 - MLT1F1 LTR MaLR -65 589 426 185 65 32 0 chr1 30090842 30090873 -252102791 + (TTTTA)n Simple_repeat Simple_repeat 4 35 0 1243 190 23 31 chr1 30090916 30091174 -252102490 - AluSx SINE Alu -56 256 1 1790 166 0 35 chr1 30091187 30091506 -252102158 - AluJb SINE Alu -4 308 1 313 94 31 62 chr1 30091580 30091644 -252102020 - L1MB3 LINE L1 -13 6170 6109 1470 189 37 37 chr1 30091648 30091944 -252101720 - AluJo SINE Alu -16 296 1 1652 134 53 4 chr1 30091966 30092212 -252101452 - AluSx SINE Alu -54 258 1 1150 204 170 1 chr1 30092217 30092582 -252101082 - MLT1F1 LTR MaLR -116 426 1 22 0 0 0 chr1 30093031 30093053 -252100611 + AT_rich Low_complexity Low_complexity 1 22 0 403 326 41 51 chr1 30093763 30093959 -252099705 - MIR3 SINE MIR -9 199 6 2246 133 8 51 chr1 30094074 30094426 -252099238 + MER1B DNA MER1_type 1 337 0 203 258 152 0 chr1 30095516 30095582 -252098082 + MER5C DNA MER1_type 1 76 -248 2279 111 0 0 chr1 30095778 30096075 -252097589 + AluSg1 SINE Alu 2 298 -11 180 111 0 0 chr1 30096668 30096695 -252096969 + (TA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr1 30097824 30097845 -252095819 + AT_rich Low_complexity Low_complexity 1 21 0 266 294 192 7 chr1 30098106 30098252 -252095412 - MIR SINE MIR -22 240 68 1457 176 24 41 chr1 30098412 30098707 -252094957 + AluJo SINE Alu 1 290 -22 1284 83 0 0 chr1 30098721 30098877 -252094787 + AluY SINE Alu 126 281 -30 491 185 0 0 chr1 30098886 30098967 -252094697 + L1MB2 LINE L1 5487 5567 -604 597 185 0 0 chr1 30098971 30099063 -252094601 + FLAM_A SINE Alu 5 96 -46 2480 171 44 17 chr1 30099100 30099580 -252094084 + L1MB2 LINE L1 5636 6128 -43 2169 109 0 0 chr1 30099580 30099865 -252093799 + AluY SINE Alu 1 285 -26 2248 93 7 0 chr1 30099885 30100174 -252093490 + AluSx SINE Alu 1 291 -21 431 211 0 11 chr1 30100761 30100851 -252092813 - AluS SINE Alu -223 90 2 307 293 71 0 chr1 30100937 30101036 -252092628 + MIR SINE MIR 40 145 -63 2140 128 0 0 chr1 30101054 30101352 -252092312 + AluSx SINE Alu 1 298 -14 939 195 82 170 chr1 30101352 30101557 -252092107 - L2 LINE L2 -1140 2174 1953 1430 182 45 52 chr1 30101557 30101848 -252091816 + AluJb SINE Alu 1 289 -23 939 195 82 170 chr1 30101848 30102236 -252091428 - L2 LINE L2 -1361 1953 1633 340 162 135 14 chr1 30102248 30102322 -252091342 - L2 LINE L2 -33 3280 3198 627 285 81 71 chr1 30102323 30102616 -252091048 + L1ME LINE L1 4903 5192 -970 1585 138 21 50 chr1 30102616 30102899 -252090765 + AluJb SINE Alu 14 288 -24 627 285 81 71 chr1 30102899 30102982 -252090682 + L1ME LINE L1 5192 5273 -889 2181 110 7 0 chr1 30102982 30103274 -252090390 + AluSx SINE Alu 2 295 -17 627 285 81 71 chr1 30103274 30103651 -252090013 + L1ME LINE L1 5273 5665 -497 1119 184 85 33 chr1 30103651 30103863 -252089801 + MER58A DNA MER1_type 1 223 -1 627 285 81 71 chr1 30103863 30104019 -252089645 + L1ME LINE L1 5665 5818 -344 1505 191 0 53 chr1 30104239 30104387 -252089277 + AluJo SINE Alu 1 126 -186 2020 123 31 0 chr1 30104387 30104679 -252088985 + AluSx SINE Alu 1 301 -11 1505 191 0 53 chr1 30104679 30104833 -252088831 + AluJo SINE Alu 126 287 -25 1139 164 82 5 chr1 30104897 30105104 -252088560 - AluJb SINE Alu -6 306 84 1680 176 0 35 chr1 30105616 30105929 -252087735 - AluJb SINE Alu -10 302 1 218 320 60 0 chr1 30106591 30106691 -252086973 - MIR3 SINE MIR -10 198 93 531 222 37 30 chr1 30106811 30106946 -252086718 + MER91B DNA MER1_type 55 190 0 246 247 154 14 chr1 30107522 30107618 -252086046 + MIR SINE MIR 2 111 -97 2345 68 10 0 chr1 30107708 30108004 -252085660 - AluSp SINE Alu -14 299 1 2317 107 3 0 chr1 30108808 30109117 -252084547 - AluSg SINE Alu 0 310 1 222 227 213 0 chr1 30109174 30109249 -252084415 + MIR SINE MIR 53 143 -119 1475 94 0 0 chr1 30109668 30109849 -252083815 + AluSx SINE Alu 1 181 -131 602 309 67 51 chr1 30109990 30110214 -252083450 - L3 LINE CR1 -21 1556 1324 2269 123 0 0 chr1 30110214 30110523 -252083141 - AluSx SINE Alu -3 309 1 602 309 67 51 chr1 30110523 30110612 -252083052 - L3 LINE CR1 -253 1324 1238 725 147 9 0 chr1 30110782 30110891 -252082773 + AluSx SINE Alu 188 297 -15 25 0 0 0 chr1 30110891 30110916 -252082748 + AT_rich Low_complexity Low_complexity 1 25 0 2540 57 3 0 chr1 30110917 30111213 -252082451 + AluY SINE Alu 1 297 -14 2000 153 3 3 chr1 30111221 30111522 -252082142 + AluJo SINE Alu 3 303 -9 251 337 42 11 chr1 30111522 30111617 -252082047 - L3 LINE CR1 -481 1096 999 834 167 0 8 chr1 30111762 30111894 -252081770 + FRAM SINE Alu 20 150 -26 206 274 48 0 chr1 30111974 30112036 -252081628 - MIR SINE MIR -40 222 158 690 149 0 0 chr1 30112311 30112445 -252081219 + (TC)n Simple_repeat Simple_repeat 2 135 0 740 175 0 0 chr1 30113661 30113775 -252079889 - AluJb SINE Alu -197 115 2 1470 155 19 4 chr1 30115489 30115747 -252077917 + AluSg SINE Alu 37 298 -12 935 196 131 16 chr1 30115747 30115992 -252077672 + MER44D DNA MER2_type 461 605 0 344 164 0 6 chr1 30115992 30116056 -252077608 - L1MB4 LINE L1 -51 6123 6063 403 288 25 66 chr1 30116085 30116234 -252077430 + MIR SINE MIR 67 208 -54 939 149 0 8 chr1 30116234 30116368 -252077296 + FLAM_A SINE Alu 1 133 0 403 288 25 66 chr1 30116368 30116416 -252077248 + MIR SINE MIR 208 256 -6 262 91 23 0 chr1 30116573 30116617 -252077047 - AluSc SINE Alu -4 295 251 21 0 0 0 chr1 30116618 30116639 -252077025 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr1 30116639 30116659 -252077005 + (GA)n Simple_repeat Simple_repeat 2 21 0 1988 145 30 0 chr1 30117371 30117668 -252075996 + AluSx SINE Alu 1 306 -6 40 0 0 0 chr1 30117690 30117730 -252075934 + AT_rich Low_complexity Low_complexity 1 40 0 1935 134 13 36 chr1 30117995 30118302 -252075362 - AluSx SINE Alu -12 300 1 288 0 0 0 chr1 30118327 30118359 -252075305 + (CA)n Simple_repeat Simple_repeat 2 33 0 22 35 0 0 chr1 30118961 30118990 -252074674 + AT_rich Low_complexity Low_complexity 1 29 0 2637 52 0 0 chr1 30119118 30119426 -252074238 + AluY SINE Alu 1 308 -3 2220 96 0 0 chr1 30119983 30120284 -252073380 - AluSc SINE Alu 0 301 1 2175 98 7 0 chr1 30121017 30121302 -252072362 + AluSx SINE Alu 19 305 -7 1074 202 47 0 chr1 30123016 30123209 -252070455 + AluJo SINE Alu 9 210 -102 180 0 0 0 chr1 30123233 30123253 -252070411 + (CAA)n Simple_repeat Simple_repeat 2 21 0 773 194 0 22 chr1 30123311 30123445 -252070219 + FLAM_C SINE Alu 1 131 -2 331 267 8 15 chr1 30123478 30123609 -252070055 + L1ME4a LINE L1 5990 6119 -2 249 236 28 14 chr1 30125225 30125297 -252068367 + CT-rich Low_complexity Low_complexity 5 77 0 1852 164 7 10 chr1 30125395 30125694 -252067970 - AluJb SINE Alu -14 298 1 2321 88 7 10 chr1 30125969 30126277 -252067387 + AluSp SINE Alu 1 307 -6 603 289 122 10 chr1 30126407 30126604 -252067060 - MIR SINE MIR -13 249 31 25 0 0 0 chr1 30127342 30127367 -252066297 + AT_rich Low_complexity Low_complexity 1 25 0 865 106 8 0 chr1 30127367 30127490 -252066174 - AluSg/x SINE Alu -26 286 163 2263 110 0 0 chr1 30127619 30127919 -252065745 - AluSx SINE Alu -12 300 1 222 253 287 11 chr1 30128112 30128199 -252065465 - MIR SINE MIR -82 126 16 24 32 0 0 chr1 30128467 30128498 -252065166 + AT_rich Low_complexity Low_complexity 1 31 0 2496 80 0 0 chr1 30129161 30129462 -252064202 - AluY SINE Alu -10 301 1 25 0 0 0 chr1 30129531 30129556 -252064108 + AT_rich Low_complexity Low_complexity 1 25 0 2220 128 0 0 chr1 30129561 30129873 -252063791 - AluSx SINE Alu 0 312 1 1062 147 54 5 chr1 30129873 30130057 -252063607 - L1MC2 LINE L1 -15 6329 6137 5621 150 63 40 chr1 30130057 30130895 -252062769 - L1MC3 LINE L1 -191 7594 6722 1450 125 0 10 chr1 30130895 30131103 -252062561 + AluJb SINE Alu 85 290 -22 5621 150 63 40 chr1 30131103 30131373 -252062291 - L1MC3 LINE L1 -1063 6722 6460 2413 73 0 0 chr1 30131380 30131667 -252061997 + AluY SINE Alu 1 287 -24 286 226 86 32 chr1 30131684 30131777 -252061887 + L2 LINE L2 3216 3313 0 2198 116 0 3 chr1 30131923 30132225 -252061439 + AluSx SINE Alu 1 301 -11 663 301 150 31 chr1 30132271 30132719 -252060945 - L2 LINE L2 -8 3305 2805 359 24 0 0 chr1 30133111 30133152 -252060512 + (CA)n Simple_repeat Simple_repeat 1 41 0 422 219 53 86 chr1 30133285 30133436 -252060228 + L2 LINE L2 3168 3313 0 1970 108 30 20 chr1 30133818 30134114 -252059550 + AluSq SINE Alu 1 299 -14 2206 108 6 19 chr1 30134622 30134938 -252058726 - AluSx SINE Alu 0 312 1 205 218 18 36 chr1 30135053 30135108 -252058556 + MIR SINE MIR 92 145 -117 2148 138 3 3 chr1 30135594 30135906 -252057758 - AluSx SINE Alu 0 312 1 558 206 0 53 chr1 30136924 30137055 -252056609 + L2 LINE L2 3185 3308 -5 2202 112 3 19 chr1 30137262 30137574 -252056090 - AluSx SINE Alu -5 307 1 241 261 0 15 chr1 30137580 30137645 -252056019 - L2 LINE L2 0 3313 3250 893 84 0 0 chr1 30138266 30138385 -252055279 - AluY SINE Alu -5 306 188 424 226 39 0 chr1 30138948 30139050 -252054614 - L1MA10 LINE L1 0 6334 6229 2137 132 0 0 chr1 30139079 30139374 -252054290 - AluSx SINE Alu -17 295 1 1725 164 26 29 chr1 30139374 30139685 -252053979 - AluJo SINE Alu -2 310 1 2269 123 0 0 chr1 30139737 30140039 -252053625 - AluSx SINE Alu -10 302 1 595 228 157 62 chr1 30141552 30141890 -252051774 - L1MC5 LINE L1 -36 7925 7556 611 245 13 63 chr1 30141995 30142232 -252051432 - L1MC5 LINE L1 -393 7568 7344 1105 119 17 28 chr1 30142255 30142432 -252051232 + MER20 DNA MER1_type 44 218 -1 316 191 61 116 chr1 30142433 30142580 -252051084 - L1MC5 LINE L1 -624 7337 7199 1673 127 94 22 chr1 30143149 30143425 -252050239 + AluJo SINE Alu 1 296 -16 3469 226 109 116 chr1 30143811 30143841 -252049823 - L1M LINE L1 -814 5332 5303 4513 144 22 18 chr1 30143841 30144147 -252049517 - L1MB4 LINE L1 0 6180 5877 2018 106 44 0 chr1 30144147 30144450 -252049214 - AluSg SINE Alu 0 310 1 4513 144 22 18 chr1 30144450 30144908 -252048756 - L1MB4 LINE L1 -303 5877 5413 1945 89 0 0 chr1 30144908 30145143 -252048521 - AluSx SINE Alu -62 250 16 3469 226 109 116 chr1 30145143 30145404 -252048260 - L1M LINE L1 -842 5304 5043 189 74 0 0 chr1 30145404 30145431 -252048233 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 3469 226 109 116 chr1 30145431 30146188 -252047476 - L1M LINE L1 -1103 5043 4282 2312 95 10 0 chr1 30146188 30146494 -252047170 + AluSg SINE Alu 1 309 -1 3469 226 109 116 chr1 30146494 30146580 -252047084 - L1M LINE L1 -1864 4282 4197 2101 110 36 32 chr1 30146580 30146889 -252046775 + AluSx SINE Alu 1 310 -2 3469 226 109 116 chr1 30146889 30147006 -252046658 - L1M LINE L1 -1949 4197 4081 2163 114 0 3 chr1 30147006 30147305 -252046359 - AluSg SINE Alu -12 298 1 3469 226 109 116 chr1 30147305 30147609 -252046055 - L1M LINE L1 -2065 4081 3776 2291 111 0 0 chr1 30147609 30147906 -252045758 - AluSx SINE Alu -15 297 1 3469 226 109 116 chr1 30147906 30147990 -252045674 - L1M LINE L1 -2370 3776 3693 1741 173 0 13 chr1 30147990 30148297 -252045367 - AluJb SINE Alu -9 303 1 3469 226 109 116 chr1 30148297 30148556 -252045108 - L1M LINE L1 -2453 3693 3472 2503 82 0 13 chr1 30149929 30150245 -252043419 - AluSx SINE Alu 0 312 1 2235 83 0 24 chr1 30152077 30152407 -252041257 - AluSc SINE Alu 0 323 1 1838 136 97 13 chr1 30152509 30152818 -252040846 + MER7A DNA MER2_type 2 334 -12 1195 246 135 25 chr1 30152963 30153539 -252040125 - L2 LINE L2 -5 3308 2660 2185 113 0 0 chr1 30153539 30153850 -252039814 + AluSq SINE Alu 1 311 0 260 179 0 46 chr1 30154125 30154190 -252039474 + L2 LINE L2 3133 3234 -79 1397 182 6 88 chr1 30154194 30154524 -252039140 - AluJo SINE Alu -9 303 1 1900 241 108 6 chr1 30156172 30156673 -252036991 + MLT1H1 LTR MaLR 1 552 -3 2014 128 10 7 chr1 30156791 30157089 -252036575 - AluSx SINE Alu -12 300 2 3847 133 19 18 chr1 30157501 30157837 -252035827 - L1MB2 LINE L1 -4 6167 5828 2270 98 7 0 chr1 30157837 30158123 -252035541 - AluSc SINE Alu -19 290 3 3847 133 19 18 chr1 30158123 30158416 -252035248 - L1MB2 LINE L1 -343 5828 5537 1876 139 26 23 chr1 30158631 30158940 -252034724 - AluSx SINE Alu -2 310 1 2222 87 0 24 chr1 30158948 30159269 -252034395 - AluSc SINE Alu 0 314 1 1815 133 97 13 chr1 30159371 30159680 -252033984 + MER7A DNA MER2_type 2 334 -12 671 277 58 29 chr1 30210646 30210888 -251982776 - MIR SINE MIR 0 262 14 180 234 0 43 chr1 30210985 30211032 -251982632 + MIR SINE MIR 218 262 0 305 294 59 0 chr1 30211879 30211981 -251981683 + MIR3 SINE MIR 92 199 -9 189 287 226 0 chr1 30212845 30212960 -251980704 - MIR SINE MIR -74 188 48 521 346 97 5 chr1 30213413 30213630 -251980034 + MIR SINE MIR 2 238 -24 231 350 157 5 chr1 30213996 30214344 -251979320 - L2 LINE L2 -337 2977 2574 409 316 64 14 chr1 30214344 30214547 -251979117 + MIR SINE MIR 3 209 -53 2352 91 0 44 chr1 30215845 30216164 -251977500 - AluSq SINE Alu -8 305 1 2417 77 0 7 chr1 30216244 30216541 -251977123 - AluY SINE Alu -16 295 1 22 35 0 0 chr1 30216550 30216579 -251977085 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chr1 30216601 30216630 -251977034 + AT_rich Low_complexity Low_complexity 1 29 0 2140 114 3 7 chr1 30216630 30216919 -251976745 + AluSx SINE Alu 1 288 -24 1586 140 79 19 chr1 30216923 30217188 -251976476 - AluJo SINE Alu -30 282 2 2145 94 42 3 chr1 30217224 30217511 -251976153 + AluSq SINE Alu 1 298 -15 1499 230 57 42 chr1 30218668 30219121 -251974543 + L1MC4 LINE L1 7462 7921 -121 839 129 0 50 chr1 30219225 30219365 -251974299 + FLAM_C SINE Alu 1 133 -10 1860 106 110 0 chr1 30219568 30219832 -251973832 - AluSx SINE Alu -9 303 11 443 257 119 43 chr1 30219849 30220059 -251973605 - MIR SINE MIR -32 230 5 2467 90 0 6 chr1 30220083 30220395 -251973269 + AluY SINE Alu 1 310 -1 226 336 116 30 chr1 30220469 30220701 -251972963 + L2 LINE L2 3018 3269 -3 481 151 16 54 chr1 30221690 30221875 -251971789 + CT-rich Low_complexity Low_complexity 2 179 0 1341 82 12 0 chr1 30221880 30222050 -251971614 + AluY SINE Alu 128 299 -12 845 227 6 0 chr1 30222059 30222231 -251971433 + FAM SINE Alu 1 173 -2 1880 156 0 20 chr1 30222566 30222861 -251970803 - AluJb SINE Alu -11 301 13 2646 157 38 2 chr1 30222893 30223397 -251970267 + L1MB3 LINE L1 5451 5972 -211 882 137 103 7 chr1 30223397 30223587 -251970077 + AluJb SINE Alu 125 328 0 995 171 5 0 chr1 30223607 30223794 -251969870 + L1MB3 LINE L1 5994 6181 -2 2162 132 0 23 chr1 30224247 30224551 -251969113 - AluSx SINE Alu -15 297 1 1950 146 17 10 chr1 30224554 30224856 -251968808 - AluSx SINE Alu -8 304 1 1182 151 11 113 chr1 30225071 30225270 -251968394 + MER8 DNA MER2_type 1 219 -20 2249 129 0 3 chr1 30225270 30225581 -251968083 + AluSg SINE Alu 1 310 0 2235 104 0 7 chr1 30225590 30225905 -251967759 + AluSx SINE Alu 1 313 0 1182 151 11 113 chr1 30225905 30225958 -251967706 + MER8 DNA MER2_type 227 238 -1 2906 7 0 0 chr1 30226013 30226318 -251967346 + AluYb8 SINE Alu 1 305 -13 840 157 16 32 chr1 30226451 30226625 -251967039 + MER69A DNA AcHobo 1 169 -8 1865 169 0 10 chr1 30226693 30226994 -251966670 - AluJb SINE Alu -11 301 4 559 146 0 0 chr1 30227416 30227505 -251966159 - AluJ/FLAM SINE Alu -213 99 11 426 277 8 8 chr1 30227643 30227762 -251965902 + MIR SINE MIR 31 149 -113 2373 88 13 10 chr1 30227765 30228073 -251965591 + AluSq SINE Alu 1 309 -4 733 139 0 0 chr1 30228095 30228217 -251965447 + FLAM_C SINE Alu 21 142 -1 1079 98 0 0 chr1 30228217 30228350 -251965314 + AluSq/x SINE Alu 1 133 -179 2263 115 3 0 chr1 30228355 30228650 -251965014 + AluSp SINE Alu 3 298 -15 1407 152 42 115 chr1 30228652 30228802 -251964862 + AluJo SINE Alu 1 116 -196 258 32 0 0 chr1 30228802 30228833 -251964831 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1407 152 42 115 chr1 30228833 30229012 -251964652 + AluJo SINE Alu 116 306 -6 566 121 9 60 chr1 30229268 30229384 -251964280 - FRAM SINE Alu -5 171 62 203 224 92 26 chr1 30229386 30229462 -251964202 - MIR SINE MIR -92 116 36 529 216 0 9 chr1 30229572 30229683 -251963981 + MIR SINE MIR 21 130 -132 246 234 0 0 chr1 30231024 30231088 -251962576 - AluJo SINE Alu -166 136 73 2383 80 3 10 chr1 30231233 30231534 -251962130 - AluSx SINE Alu -13 299 1 2420 96 3 0 chr1 30231640 30231943 -251961721 - AluSp SINE Alu -4 309 6 3092 101 15 19 chr1 30231957 30232432 -251961232 + LTR15 LTR ERV1 10 482 -11 1477 141 76 65 chr1 30232440 30232553 -251961111 - AluJb SINE Alu -46 266 156 2626 59 0 3 chr1 30232553 30232860 -251960804 - AluY SINE Alu -5 306 1 1477 141 76 65 chr1 30232860 30233009 -251960655 - AluJb SINE Alu -156 156 1 1717 169 3 29 chr1 30233009 30233188 -251960476 + L1MB2 LINE L1 5788 5955 -216 2301 118 0 0 chr1 30233188 30233492 -251960172 + AluSx SINE Alu 1 304 -8 1717 169 3 29 chr1 30233492 30233661 -251960003 + L1MB2 LINE L1 5955 6127 -44 2515 59 3 3 chr1 30233661 30233964 -251959700 + AluY SINE Alu 1 303 -8 243 132 26 0 chr1 30233970 30234008 -251959656 + MER4E LTR ERV1 653 691 -75 2199 113 7 0 chr1 30234036 30234329 -251959335 - AluSx SINE Alu -17 295 1 236 100 0 0 chr1 30234329 30234369 -251959295 + L1MB2 LINE L1 6125 6164 -7 2298 108 3 0 chr1 30234510 30234807 -251958857 - AluSp SINE Alu -15 298 1 348 279 44 44 chr1 30234882 30235018 -251958646 - MIR SINE MIR -70 192 57 1127 187 179 53 chr1 30235303 30235379 -251958285 - MSTC LTR MaLR 0 428 363 2466 93 0 0 chr1 30235379 30235680 -251957984 + AluSq SINE Alu 1 301 -12 1127 187 179 53 chr1 30235680 30235983 -251957681 - MSTC LTR MaLR -65 363 1 201 278 52 9 chr1 30237231 30237346 -251956318 + L2 LINE L2 2364 2483 -831 219 88 0 0 chr1 30237614 30237648 -251956016 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 993 122 14 0 chr1 30237665 30237804 -251955860 - AluJo SINE Alu -171 141 1 188 352 115 12 chr1 30237812 30238065 -251955599 + L2 LINE L2 2697 2975 -339 1085 73 7 7 chr1 30238078 30238214 -251955450 - AluSq/x SINE Alu -176 136 1 226 320 62 8 chr1 30238215 30238343 -251955321 + L2 LINE L2 2966 3100 -172 538 185 11 112 chr1 30238349 30238527 -251955137 - L2 LINE L2 0 3313 3154 1367 205 41 41 chr1 30238658 30238849 -251954815 - MER90 LTR ERV1 0 614 421 2098 144 7 0 chr1 30238849 30239147 -251954517 + AluSx SINE Alu 1 300 -12 1367 205 41 41 chr1 30239147 30239307 -251954357 - MER90 LTR ERV1 -192 422 263 788 169 59 156 chr1 30239307 30239547 -251954117 - MLT1B LTR MaLR 0 390 197 2385 97 3 6 chr1 30239547 30239858 -251953806 - AluSg SINE Alu 0 310 1 788 169 59 156 chr1 30239858 30239990 -251953674 - MLT1B LTR MaLR -193 197 54 1046 179 27 0 chr1 30240028 30240251 -251953413 - MER90 LTR ERV1 -346 229 1 286 279 167 41 chr1 30240499 30240768 -251952896 - L2 LINE L2 -1444 1870 1568 307 307 86 18 chr1 30241092 30241255 -251952409 + MIR SINE MIR 48 221 -41 1682 109 124 11 chr1 30241650 30241916 -251951748 - AluSg SINE Alu -14 296 1 225 0 0 0 chr1 30242192 30242217 -251951447 + (T)n Simple_repeat Simple_repeat 1 25 0 303 238 62 0 chr1 30242574 30242654 -251951010 + MIR3 SINE MIR 109 193 -15 2416 90 3 3 chr1 30243182 30243492 -251950172 + AluSx SINE Alu 1 310 -2 2456 98 0 0 chr1 30243586 30243891 -251949773 + AluSg SINE Alu 6 310 0 1040 103 0 0 chr1 30244005 30244141 -251949523 + AluSq/x SINE Alu 1 136 -176 374 245 140 7 chr1 30244182 30244325 -251949339 + MIR SINE MIR 30 191 -71 5625 59 2 74 chr1 30244450 30245244 -251948420 - SVA Other Other 0 1386 650 271 412 0 21 chr1 30245244 30245341 -251948323 + polypyrimidine Low_complexity Low_complexity 3 97 0 427 232 10 38 chr1 30245344 30245630 -251948034 + CT-rich Low_complexity Low_complexity 1 278 0 665 144 0 0 chr1 30245730 30245834 -251947830 + AluJb SINE Alu 194 297 -15 2402 107 0 0 chr1 30245861 30246171 -251947493 + AluSx SINE Alu 3 312 0 681 147 37 0 chr1 30246240 30246349 -251947315 + AluJo/FLAM SINE Alu 2 114 -198 2008 153 7 0 chr1 30246350 30246637 -251947027 - AluJb SINE Alu -22 290 2 732 203 0 0 chr1 30246645 30246773 -251946891 - AluJo SINE Alu -178 134 7 2145 130 3 10 chr1 30246803 30247104 -251946560 + AluJb SINE Alu 1 299 -13 224 186 0 0 chr1 30247110 30247153 -251946511 - MIR SINE MIR -205 57 15 201 220 20 0 chr1 30247935 30247985 -251945679 - L2 LINE L2 -263 3050 3000 412 314 39 20 chr1 30248235 30248388 -251945276 - MIR SINE MIR -66 196 41 2303 89 0 3 chr1 30248944 30249237 -251944427 + AluSp SINE Alu 19 310 -3 245 272 19 48 chr1 30249267 30249345 -251944319 + L2 LINE L2 3173 3249 -23 1576 172 20 17 chr1 30249345 30249647 -251944017 - AluJo SINE Alu -6 306 4 245 272 19 48 chr1 30249647 30249671 -251943993 + L2 LINE L2 3249 3272 0 219 317 54 58 chr1 30249761 30249966 -251943698 + L3 LINE CR1 1176 1379 -198 861 109 0 29 chr1 30251230 30251367 -251942297 - FLAM_C SINE Alu 0 133 1 230 247 11 90 chr1 30251571 30251660 -251942004 - L2 LINE L2 -69 3244 3163 1944 178 0 0 chr1 30252190 30252494 -251941170 - AluJo SINE Alu -8 304 1 280 213 117 43 chr1 30253221 30253315 -251940349 - MIR SINE MIR -112 150 50 332 331 23 15 chr1 30253353 30253483 -251940181 - L1MEc LINE L1 -4026 2370 2240 1862 165 13 0 chr1 30253501 30253804 -251939860 + AluSx SINE Alu 6 312 0 353 147 0 88 chr1 30253806 30253874 -251939790 + AluSg/x SINE Alu 133 194 -106 2249 92 7 3 chr1 30253974 30254269 -251939395 - AluSg SINE Alu -14 296 1 2164 97 3 24 chr1 30254675 30255000 -251938664 + AluSx SINE Alu 1 319 0 198 0 0 0 chr1 30255299 30255321 -251938343 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 2053 126 14 3 chr1 30255321 30255607 -251938057 + AluSc SINE Alu 1 289 -20 2489 74 3 7 chr1 30255623 30255932 -251937732 - AluY SINE Alu -1 310 3 39 0 0 0 chr1 30255934 30255973 -251937691 + AT_rich Low_complexity Low_complexity 1 39 0 1324 178 20 66 chr1 30256293 30256597 -251937067 + AluJo SINE Alu 1 290 -22 786 191 12 24 chr1 30256688 30256856 -251936808 - MER4D LTR ERV1 -8 895 730 1358 161 134 27 chr1 30256956 30257217 -251936447 - AluJb SINE Alu -15 297 9 2348 92 7 0 chr1 30257231 30257523 -251936141 - AluSq SINE Alu -19 294 1 341 257 14 0 chr1 30257523 30257597 -251936067 - LTR39 LTR ERV1 -306 477 403 2171 122 7 0 chr1 30257597 30257893 -251935771 - AluSx SINE Alu -10 302 5 1664 126 60 0 chr1 30257954 30258223 -251935441 - MER49 LTR ERV1 -638 285 1 546 165 10 0 chr1 30258482 30258579 -251935085 + MSTB2 LTR MaLR 360 457 0 197 304 130 0 chr1 30258591 30258706 -251934958 + L2 LINE L2 2633 2762 -552 1022 205 90 26 chr1 30258920 30259232 -251934432 + L1MC5 LINE L1 7260 7591 -370 1310 82 20 41 chr1 30259314 30259509 -251934155 - AluSg/x SINE Alu -3 307 117 2449 93 3 0 chr1 30259540 30259852 -251933812 + AluSp SINE Alu 1 313 0 228 213 82 0 chr1 30259856 30259917 -251933747 + L1MC5 LINE L1 7701 7766 -195 1481 196 0 39 chr1 30259933 30260218 -251933446 + AluJo SINE Alu 1 274 -38 449 212 20 0 chr1 30260379 30260478 -251933186 + L1MC5 LINE L1 7805 7905 -56 214 306 0 0 chr1 30260515 30260577 -251933087 + L2 LINE L2 3025 3086 -186 730 321 97 16 chr1 30261250 30261633 -251932031 - L2 LINE L2 -4 3309 2896 21 0 0 0 chr1 30261808 30261829 -251931835 + AT_rich Low_complexity Low_complexity 1 21 0 188 156 0 44 chr1 30261919 30261964 -251931700 - MIR SINE MIR -157 105 63 241 357 200 0 chr1 30262540 30262680 -251930984 - MIR SINE MIR -6 256 89 2293 125 3 3 chr1 30263146 30263458 -251930206 + AluSx SINE Alu 1 312 0 548 39 0 0 chr1 30263979 30264056 -251929608 + AluSc SINE Alu 232 308 -1 1825 131 46 0 chr1 30264134 30264336 -251929328 - AluSg SINE Alu -14 296 76 2378 90 27 0 chr1 30264336 30264637 -251929027 - AluSq SINE Alu -4 309 1 1825 131 46 0 chr1 30264637 30264717 -251928947 - AluSg SINE Alu -234 76 1 506 310 22 22 chr1 30264981 30265165 -251928499 - MIR SINE MIR -77 185 2 2215 70 14 3 chr1 30265772 30266057 -251927607 + AluY SINE Alu 1 288 -23 3885 81 33 0 chr1 30266390 30266912 -251926752 - SVA Other Other -846 540 2 1621 118 32 20 chr1 30269308 30269554 -251924110 + AluSx SINE Alu 55 303 -9 2513 69 3 0 chr1 30269650 30269953 -251923711 - AluSp SINE Alu -9 304 1 723 196 146 5 chr1 30269986 30270185 -251923479 + L1ME1 LINE L1 5936 6162 -4 384 306 71 24 chr1 30270448 30270618 -251923046 - L3 LINE CR1 -77 1500 1323 2288 79 7 10 chr1 30270631 30270922 -251922742 - AluY SINE Alu -21 290 1 1703 113 0 0 chr1 30271300 30271522 -251922142 - AluSc SINE Alu -17 292 71 2490 87 0 0 chr1 30271522 30271818 -251921846 - AluSx SINE Alu -14 298 1 534 127 0 0 chr1 30271818 30271897 -251921767 - AluSc SINE Alu -229 80 2 506 310 22 22 chr1 30272162 30272346 -251921318 - MIR SINE MIR -77 185 2 2636 61 0 3 chr1 30272953 30273263 -251920401 + AluY SINE Alu 1 309 -2 290 119 0 0 chr1 30273548 30273590 -251920074 - MIR SINE MIR -219 43 2 2548 75 0 0 chr1 30273628 30273934 -251919730 - AluY SINE Alu -5 306 1 259 225 28 0 chr1 30274735 30274806 -251918858 + (TA)n Simple_repeat Simple_repeat 2 74 0 210 349 51 23 chr1 30274869 30275084 -251918580 - L2 LINE L2 -528 2786 2566 2480 87 3 0 chr1 30275464 30275773 -251917891 - AluSp SINE Alu -3 310 1 4158 45 13 2 chr1 30276021 30276558 -251917106 - L1PA4 LINE L1 -1 6154 5612 737 163 8 0 chr1 30276685 30276808 -251916856 + FLAM_C SINE Alu 1 124 -9 251 232 14 14 chr1 30276811 30276880 -251916784 + MIR SINE MIR 28 96 -166 318 162 22 199 chr1 30276982 30277077 -251916587 + MER81 DNA DNA 2 68 -46 2401 86 3 0 chr1 30277077 30277378 -251916286 + AluY SINE Alu 1 302 -9 318 162 22 199 chr1 30277378 30277418 -251916246 + MER81 DNA DNA 68 113 -1 288 280 13 0 chr1 30277513 30277588 -251916076 + MIR SINE MIR 121 196 -66 1883 160 3 10 chr1 30277789 30278089 -251915575 + AluJb SINE Alu 4 301 -11 840 157 16 32 chr1 30278157 30278331 -251915333 - MER69A DNA AcHobo -8 169 1 1181 149 11 114 chr1 30278515 30278568 -251915096 - MER8 DNA MER2_type -1 238 181 2278 97 0 7 chr1 30278568 30278879 -251914785 - AluSx SINE Alu 0 309 1 2258 126 0 3 chr1 30278888 30279198 -251914466 - AluSg SINE Alu -1 309 1 1181 149 11 114 chr1 30279198 30279394 -251914270 - MER8 DNA MER2_type -66 173 4 1879 147 17 10 chr1 30279612 30279904 -251913760 + AluSx SINE Alu 1 294 -18 490 164 0 0 chr1 30279911 30279984 -251913680 + AluS SINE Alu 5 77 -235 348 164 0 0 chr1 30280248 30280315 -251913349 + (TG)n Simple_repeat Simple_repeat 1 67 0 886 255 84 29 chr1 30280495 30280876 -251912788 + L2 LINE L2 2910 3311 -2 280 290 43 11 chr1 30280936 30281029 -251912635 - MIR SINE MIR -55 207 112 257 345 5 0 chr1 30281193 30281300 -251912364 + MIR SINE MIR 7 119 -89 286 280 124 6 chr1 30281676 30281841 -251911823 + MIR SINE MIR 14 192 -62 952 248 33 33 chr1 30282362 30282460 -251911204 + AluJo SINE Alu 1 98 -204 314 0 49 0 chr1 30282460 30282501 -251911163 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1685 148 4 12 chr1 30282503 30282759 -251910905 - AluJb SINE Alu -52 260 7 952 248 33 33 chr1 30282759 30282959 -251910705 + AluJo SINE Alu 98 302 0 346 258 117 17 chr1 30283116 30283236 -251910428 - MIR SINE MIR -12 250 119 1947 144 67 9 chr1 30283338 30283684 -251909980 - MER47A DNA MER2_type 0 366 1 188 338 13 26 chr1 30283810 30283887 -251909777 - MIR SINE MIR -116 92 17 341 222 70 70 chr1 30283895 30284045 -251909619 + MIR SINE MIR 24 176 -86 2532 151 58 13 chr1 30284045 30284510 -251909154 - MER66B LTR ERV1 0 486 1 341 222 70 70 chr1 30284510 30284530 -251909134 + MIR SINE MIR 175 194 -68 264 255 88 0 chr1 30284584 30284686 -251908978 + MIR3 SINE MIR 90 200 -8 2134 74 24 34 chr1 30285244 30285562 -251908102 - AluY SINE Alu 0 311 1 832 144 0 23 chr1 30285936 30286068 -251907596 + AluSg/x SINE Alu 163 291 -19 320 304 60 24 chr1 30286232 30286400 -251907264 + MIR SINE MIR 20 193 -69 1326 194 27 34 chr1 30286470 30286763 -251906901 - AluJb SINE Alu -21 291 1 2398 83 0 7 chr1 30286912 30287214 -251906450 - AluY SINE Alu -11 300 1 183 292 15 15 chr1 30287283 30287348 -251906316 - MIR SINE MIR -137 125 61 827 167 0 0 chr1 30287647 30287779 -251905885 - FLAM_C SINE Alu -9 134 3 2131 128 13 0 chr1 30287785 30288091 -251905573 - AluSx SINE Alu -2 310 1 737 202 24 30 chr1 30288147 30288315 -251905349 - FRAM SINE Alu -13 163 1 290 216 281 36 chr1 30289146 30289285 -251904379 - MIR SINE MIR 0 262 90 2004 99 51 20 chr1 30289296 30289589 -251904075 - AluSx SINE Alu -10 302 1 2110 123 0 7 chr1 30290227 30290520 -251903144 + AluSx SINE Alu 1 291 -21 1596 168 28 31 chr1 30290603 30290889 -251902775 + AluJo SINE Alu 7 291 -21 2003 111 57 0 chr1 30290892 30291171 -251902493 + AluSq SINE Alu 1 295 -18 185 297 314 16 chr1 30291522 30291707 -251901957 + MIR SINE MIR 23 262 0 2133 98 11 11 chr1 30292331 30292618 -251901046 - AluSg1 SINE Alu -22 287 1 1926 133 14 4 chr1 30292626 30292937 -251900727 - AluSx SINE Alu 0 314 1 347 277 32 0 chr1 30292942 30293036 -251900628 + L2 LINE L2 3214 3310 -3 24 0 0 0 chr1 30293064 30293088 -251900576 + AT_rich Low_complexity Low_complexity 1 24 0 2019 70 0 0 chr1 30293098 30293339 -251900325 + AluY SINE Alu 1 241 -70 2207 97 10 0 chr1 30293445 30293735 -251899929 + AluSx SINE Alu 12 304 -8 1658 130 50 76 chr1 30294073 30294374 -251899290 + AluSx SINE Alu 1 293 -19 246 323 52 0 chr1 30294471 30294567 -251899097 - L2 LINE L2 -4 3268 3168 225 344 5 48 chr1 30294646 30294835 -251898829 - L1ME4a LINE L1 -81 6040 5860 2254 94 3 3 chr1 30294842 30295130 -251898534 - AluSp SINE Alu -13 300 13 713 158 23 30 chr1 30295144 30295277 -251898387 - FLAM_A SINE Alu 0 133 2 2135 121 10 3 chr1 30295288 30295586 -251898078 - AluSq SINE Alu -13 300 1 406 250 87 109 chr1 30295594 30295796 -251897868 - L1ME4a LINE L1 -265 5856 5664 2083 123 7 0 chr1 30295796 30296089 -251897575 + AluSq SINE Alu 1 295 -18 406 250 87 109 chr1 30296089 30296254 -251897410 - L1ME4a LINE L1 -457 5664 5497 642 116 0 0 chr1 30296272 30296358 -251897306 - AluJ/FLAM SINE Alu -221 91 6 2077 115 6 37 chr1 30296440 30296762 -251896902 + AluSx SINE Alu 1 312 0 1107 159 0 0 chr1 30296766 30296929 -251896735 + AluSg/x SINE Alu 129 291 -21 687 222 0 0 chr1 30297126 30297252 -251896412 + AluJb SINE Alu 2 127 -185 2381 89 7 0 chr1 30297364 30297667 -251895997 + AluSq SINE Alu 1 305 -8 3192 149 11 31 chr1 30297667 30298092 -251895572 - Tigger1 DNA MER2_type -194 2224 1811 1753 139 0 16 chr1 30298092 30298350 -251895314 + AluSx SINE Alu 37 290 -22 3192 149 11 31 chr1 30298350 30298476 -251895188 - Tigger1 DNA MER2_type -607 1811 1684 622 133 0 0 chr1 30298476 30298566 -251895098 + AluSg/x SINE Alu 209 298 -14 1944 157 7 0 chr1 30298613 30298912 -251894752 + AluSx SINE Alu 1 301 -11 904 132 16 0 chr1 30298916 30299045 -251894619 + AluSq/x SINE Alu 1 131 -181 2470 45 0 72 chr1 30299045 30299378 -251894286 + AluY SINE Alu 1 309 -2 22 0 0 54 chr1 30299431 30299451 -251894213 + AT_rich Low_complexity Low_complexity 1 20 -15 2335 91 13 7 chr1 30299451 30299758 -251893906 + AluSx SINE Alu 1 309 -3 22 0 0 54 chr1 30299758 30299774 -251893890 + AT_rich Low_complexity Low_complexity 20 35 0 1936 170 0 6 chr1 30299775 30300087 -251893577 + AluJb SINE Alu 1 310 -2 1853 171 7 0 chr1 30300120 30300407 -251893257 - AluSx SINE Alu -23 289 1 1957 123 60 11 chr1 30300416 30300701 -251892963 - AluSx SINE Alu -11 301 3 2443 91 0 3 chr1 30301711 30302019 -251891645 - AluSp SINE Alu -6 307 1 570 257 0 0 chr1 30302386 30302499 -251891165 + MER3 DNA MER1_type 1 113 -96 235 242 16 16 chr1 30302455 30302517 -251891147 - Charlie5 DNA MER1_type -2546 66 5 * 21 0 0 0 chr1 30303195 30303216 -251890448 + AT_rich Low_complexity Low_complexity 1 21 0 1612 193 7 7 chr1 30304001 30304301 -251889363 - AluJo SINE Alu -12 300 1 2144 138 0 0 chr1 30304527 30304832 -251888832 - AluSx SINE Alu -7 305 1 955 161 37 12 chr1 30304833 30304995 -251888669 - FRAM SINE Alu -10 166 1 25 0 0 0 chr1 30305380 30305405 -251888259 + AT_rich Low_complexity Low_complexity 1 25 0 2104 140 0 16 chr1 30305675 30305847 -251887817 - AluSg SINE Alu -7 303 137 2408 90 0 3 chr1 30305847 30306148 -251887516 - AluSg SINE Alu -10 300 1 2104 140 0 16 chr1 30306148 30306283 -251887381 - AluSg SINE Alu -173 137 1 2278 74 17 14 chr1 30306286 30306583 -251887081 - AluY SINE Alu -13 298 1 2378 66 17 0 chr1 30306640 30306928 -251886736 - AluY SINE Alu -18 293 1 684 118 0 0 chr1 30307220 30307322 -251886342 - AluSq/x SINE Alu -204 108 7 2480 67 3 13 chr1 30307360 30307673 -251885991 + AluY SINE Alu 1 310 -1 715 239 53 25 chr1 30308113 30308356 -251885308 - MIR SINE MIR -10 252 3 2081 122 0 10 chr1 30309050 30309345 -251884319 - AluSx SINE Alu -20 292 1 476 268 71 0 chr1 30310664 30310791 -251882873 + L2 LINE L2 3137 3272 0 333 295 124 0 chr1 30312357 30312486 -251881178 - L2 LINE L2 -7 3265 3121 2542 80 0 6 chr1 30313569 30313883 -251879781 + AluSx SINE Alu 1 312 0 5786 29 26 6 chr1 30314302 30314952 -251878712 - SVA Other Other 0 1386 724 320 279 153 27 chr1 30314997 30315180 -251878484 - MIR SINE MIR -49 213 8 1643 140 113 0 chr1 30316356 30316613 -251877051 - AluSx SINE Alu -26 286 1 1857 108 0 98 chr1 30316619 30316787 -251876877 - AluSx SINE Alu -37 275 149 2139 117 0 36 chr1 30316787 30317094 -251876570 - AluSq SINE Alu -17 296 1 1857 108 0 98 chr1 30317094 30317230 -251876434 - AluSx SINE Alu -163 149 1 378 0 0 0 chr1 30317508 30317550 -251876114 + (CA)n Simple_repeat Simple_repeat 2 43 0 2236 113 13 3 chr1 30317675 30317984 -251875680 - AluSx SINE Alu 0 312 1 2488 75 3 0 chr1 30318068 30318373 -251875291 + AluY SINE Alu 5 310 -1 2228 117 0 7 chr1 30318520 30318819 -251874845 - AluSg SINE Alu -13 297 1 501 194 54 47 chr1 30318904 30319033 -251874631 + MER5B DNA MER1_type 1 130 -48 2126 122 0 22 chr1 30319094 30319405 -251874259 + AluSx SINE Alu 1 304 -8 602 132 11 0 chr1 30319449 30319540 -251874124 - U6 snRNA snRNA -15 92 1 26 30 0 0 chr1 30319980 30320013 -251873651 + AT_rich Low_complexity Low_complexity 1 33 0 704 153 0 99 chr1 30320013 30320144 -251873520 - FLAM_C SINE Alu -15 118 1 207 0 0 0 chr1 30320899 30320922 -251872742 + (CAA)n Simple_repeat Simple_repeat 2 24 0 227 193 88 0 chr1 30321571 30321628 -251872036 + LTR29 LTR ERV1 269 330 -292 2216 124 0 9 chr1 30322028 30322343 -251871321 - AluSx SINE Alu 0 312 1 333 207 175 28 chr1 30322470 30322774 -251870890 - L1ME4a LINE L1 -4 6117 5744 5079 19 16 0 chr1 30322899 30323477 -251870187 - L1PA3 LINE L1 0 6155 5569 2256 42 4 2 chr1 30323477 30323782 -251869882 + L1P LINE L1 5063 5367 -789 515 207 41 135 chr1 30324568 30324787 -251868877 + L1MC4 LINE L1 7802 7993 -49 1963 158 24 7 chr1 30324787 30325084 -251868580 - AluJo SINE Alu -10 302 1 515 207 41 135 chr1 30325084 30325130 -251868534 + L1MC4 LINE L1 7993 8042 0 2313 78 10 0 chr1 30325151 30325444 -251868220 + AluSp SINE Alu 1 296 -17 2208 103 3 7 chr1 30325677 30325977 -251867687 - AluY SINE Alu -12 299 1 603 234 48 0 chr1 30325984 30326108 -251867556 - FLAM_A SINE Alu -1 141 12 1230 209 17 8 chr1 30326378 30326617 -251867047 + MER21-int LTR ERV1 1773 2013 -2178 * 1699 189 47 21 chr1 30326608 30326946 -251866718 + MER21-int LTR ERV1 2182 2528 -1663 615 141 23 40 chr1 30326947 30327124 -251866540 + CT-rich Low_complexity Low_complexity 2 175 0 2311 104 7 0 chr1 30327133 30327440 -251866224 - AluSg SINE Alu -1 309 1 298 109 22 0 chr1 30327440 30327486 -251866178 + CT-rich Low_complexity Low_complexity 2 48 0 469 104 0 0 chr1 30327486 30327553 -251866111 - Alu SINE Alu -242 68 2 2170 130 0 13 chr1 30327575 30327752 -251865912 - AluSx SINE Alu -1 311 138 2117 112 10 10 chr1 30327752 30328047 -251865617 - AluSq SINE Alu -18 295 1 2170 130 0 13 chr1 30328047 30328184 -251865480 - AluSx SINE Alu -174 138 1 574 121 11 33 chr1 30328199 30328290 -251865374 + MER21-int LTR ERV1 2555 2643 -1548 793 181 67 138 chr1 30328850 30329221 -251864443 + MER2 DNA MER2_type 1 345 0 2178 83 42 3 chr1 30329223 30329511 -251864153 - AluSx SINE Alu -13 299 1 1750 167 14 0 chr1 30329547 30329828 -251863836 - AluJo SINE Alu -27 285 1 1561 135 0 0 chr1 30329956 30330186 -251863478 + AluSg/x SINE Alu 80 309 -3 469 143 0 51 chr1 30330208 30330306 -251863358 - MER5B DNA MER1_type 0 178 86 256 232 0 14 chr1 30330306 30330375 -251863289 + MER116 DNA Mariner 1 68 -12 263 259 59 35 chr1 30330387 30330472 -251863192 - MER5B DNA MER1_type -91 87 1 2050 154 0 0 chr1 30330602 30330900 -251862764 + AluSx SINE Alu 1 298 -14 2355 88 7 0 chr1 30331338 30331643 -251862021 + AluSp SINE Alu 2 308 -5 884 123 8 8 chr1 30332441 30332571 -251861093 + FLAM_C SINE Alu 1 130 -13 830 152 0 8 chr1 30332629 30332754 -251860910 - FLAM_C SINE Alu -8 125 2 1990 96 46 0 chr1 30332754 30333036 -251860628 - AluSq SINE Alu -14 299 5 247 284 49 37 chr1 30333188 30333269 -251860395 - L2 LINE L2 -58 3214 3133 21 0 0 0 chr1 30333713 30333734 -251859930 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chr1 30334091 30334131 -251859533 + AT_rich Low_complexity Low_complexity 1 40 0 2305 84 14 10 chr1 30334320 30334617 -251859047 + AluSg SINE Alu 1 298 -12 2275 101 3 3 chr1 30334717 30335024 -251858640 - AluSg SINE Alu -3 307 1 2121 97 3 24 chr1 30335430 30335773 -251857891 + AluSx SINE Alu 1 337 0 1909 234 61 79 chr1 30335935 30336645 -251857019 - L1ME3A LINE L1 -106 6064 5368 3991 163 87 61 chr1 30336648 30336717 -251856947 + Charlie1 DNA MER1_type 82 148 -2613 2136 101 17 10 chr1 30336717 30337015 -251856649 + L1MA2 LINE L1 6005 6304 0 3991 163 87 61 chr1 30337015 30337036 -251856628 + Charlie1 DNA MER1_type 148 167 -2594 1808 148 74 44 chr1 30337036 30337400 -251856264 + THE1C LTR MaLR 1 375 0 3991 163 87 61 chr1 30337400 30338350 -251855314 + Charlie1 DNA MER1_type 167 2450 -311 1014 223 5 0 chr1 30338351 30338575 -251855089 + L1M1 LINE L1 2930 3154 -4411 1069 129 15 156 chr1 30338575 30338891 -251854773 + Charlie1 DNA MER1_type 2430 2698 -63 1823 117 61 109 chr1 30338891 30339243 -251854421 + THE1C LTR MaLR 1 334 -41 2237 108 0 3 chr1 30339243 30339548 -251854116 - AluSg SINE Alu -6 304 1 1823 117 61 109 chr1 30339548 30339589 -251854075 + THE1C LTR MaLR 334 375 0 1069 129 15 156 chr1 30339589 30339606 -251854058 + Charlie1 DNA MER1_type 2698 2716 -45 2379 75 3 3 chr1 30339642 30339934 -251853730 - AluSp SINE Alu -21 292 1 325 135 0 0 chr1 30339941 30339993 -251853671 + Charlie1 DNA MER1_type 2705 2756 -5 287 160 53 130 chr1 30340002 30340050 -251853614 - L1ME3A LINE L1 -831 5315 5265 2336 101 3 0 chr1 30340050 30340356 -251853308 - AluSg SINE Alu -3 307 1 287 160 53 130 chr1 30340356 30340438 -251853226 - L1ME3A LINE L1 -881 5265 5195 1114 299 68 25 chr1 30340443 30341183 -251852481 - L1MEc LINE L1 -865 1625 1004 371 328 36 40 chr1 30341228 30341475 -251852189 - L1MEc LINE L1 -5310 809 564 2157 114 0 16 chr1 30342646 30342961 -251850703 - AluSx SINE Alu -2 310 1 1682 189 39 0 chr1 30343259 30343545 -251850119 + AluJb SINE Alu 1 297 -15 398 20 20 0 chr1 30343545 30343596 -251850068 + (CA)n Simple_repeat Simple_repeat 2 53 0 1996 126 7 13 chr1 30344023 30344324 -251849340 + AluSq SINE Alu 1 299 -14 1790 124 4 4 chr1 30344334 30344600 -251849064 + AluY SINE Alu 39 304 -7 1227 173 0 31 chr1 30345104 30345329 -251848335 - AluJo SINE Alu -10 302 85 893 133 17 99 chr1 30345346 30345413 -251848251 - AluJo/FRAM SINE Alu 0 302 231 2415 93 0 0 chr1 30345413 30345715 -251847949 - AluSx SINE Alu -10 302 1 893 133 17 99 chr1 30345715 30345828 -251847836 - AluJo/FRAM SINE Alu -71 231 137 866 243 45 5 chr1 30345937 30346159 -251847505 - MIR SINE MIR -2 260 30 297 0 0 0 chr1 30346169 30346202 -251847462 + (TG)n Simple_repeat Simple_repeat 2 34 0 258 354 87 17 chr1 30346315 30346603 -251847061 - L2 LINE L2 -934 2380 2073 1698 120 15 135 chr1 30346721 30347054 -251846610 + AluSx SINE Alu 1 293 -19 2400 80 3 10 chr1 30347073 30347374 -251846290 + AluSp SINE Alu 1 299 -14 1688 182 0 42 chr1 30347386 30347699 -251845965 + AluJo SINE Alu 1 300 -12 729 211 87 45 chr1 30348418 30348472 -251845192 + MER112 DNA MER1_type 2 52 -204 2254 109 0 7 chr1 30348472 30348774 -251844890 + AluSx SINE Alu 1 300 -12 729 211 87 45 chr1 30348774 30348961 -251844703 + MER112 DNA MER1_type 52 253 -3 1895 159 10 3 chr1 30349055 30349350 -251844314 + AluJo SINE Alu 1 297 -15 1590 194 3 7 chr1 30349754 30350058 -251843606 + AluJo SINE Alu 3 305 -7 25 0 0 0 chr1 30350058 30350083 -251843581 + AT_rich Low_complexity Low_complexity 1 25 0 25 31 0 0 chr1 30350172 30350204 -251843460 + AT_rich Low_complexity Low_complexity 1 32 0 181 203 17 51 chr1 30350298 30350357 -251843307 - MIR SINE MIR -117 145 89 704 120 0 19 chr1 30351311 30351419 -251842245 + MLT1A1 LTR MaLR 1 106 -259 455 139 28 0 chr1 30351419 30351491 -251842173 + MLT1A1 LTR MaLR 292 365 0 957 128 11 17 chr1 30351706 30352065 -251841599 + (TA)n Simple_repeat Simple_repeat 2 358 0 23 0 0 0 chr1 30352066 30352089 -251841575 + AT_rich Low_complexity Low_complexity 1 23 0 1167 97 0 0 chr1 30352089 30352243 -251841421 - AluSc SINE Alu -24 285 132 2347 93 0 0 chr1 30352243 30352544 -251841120 - AluY SINE Alu -10 301 1 584 112 142 166 chr1 30352688 30352796 -251840868 + MER2 DNA MER2_type 1 110 -235 2383 99 0 0 chr1 30352796 30353099 -251840565 - AluSp SINE Alu -10 303 1 2382 103 3 0 chr1 30353106 30353417 -251840247 - AluSq SINE Alu 0 313 2 584 112 142 166 chr1 30353417 30353469 -251840195 + MER2 DNA MER2_type 116 165 -180 1334 131 159 8 chr1 30353469 30353714 -251839950 + LTR12 LTR ERV1 4 285 -429 292 267 11 0 chr1 30353715 30353805 -251839859 + LTR30 LTR ERV1 553 643 -79 699 119 0 0 chr1 30353805 30353906 -251839758 + LTR12 LTR ERV1 613 713 -1 1087 134 52 0 chr1 30353906 30354078 -251839586 + MER2 DNA MER2_type 165 345 0 609 266 44 52 chr1 30354940 30355040 -251838624 - MIR SINE MIR -7 255 156 2383 84 3 3 chr1 30355040 30355348 -251838316 - AluY SINE Alu -3 308 1 609 266 44 52 chr1 30355348 30355499 -251838165 - MIR SINE MIR -106 156 6 2386 82 0 0 chr1 30356407 30356701 -251836963 - AluSx SINE Alu -18 294 1 424 182 114 38 chr1 30357262 30357394 -251836270 - MIR SINE MIR -12 250 109 207 0 0 0 chr1 30357403 30357426 -251836238 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 825 285 116 4 chr1 30357599 30357981 -251835683 - L2 LINE L2 -168 3145 2728 320 398 0 0 chr1 30358357 30358475 -251835189 + MIR SINE MIR 23 140 -68 1885 179 3 0 chr1 30359558 30359865 -251833799 + AluJo SINE Alu 1 308 -4 2407 84 0 3 chr1 30359885 30360181 -251833483 - AluSp SINE Alu -18 295 1 2192 119 3 3 chr1 30360443 30360755 -251832909 + AluSx SINE Alu 1 312 0 2021 134 7 0 chr1 30361234 30361518 -251832146 - AluSq SINE Alu -23 290 5 669 235 71 90 chr1 30361640 30361680 -251831984 + MIR SINE MIR 13 52 -210 1709 161 33 20 chr1 30361680 30361979 -251831685 + AluJo SINE Alu 1 303 -9 669 235 71 90 chr1 30361979 30362193 -251831471 + MIR SINE MIR 52 262 0 873 227 122 0 chr1 30362461 30362690 -251830974 - MIR SINE MIR 0 262 6 2228 119 0 0 chr1 30362734 30363029 -251830635 + AluSx SINE Alu 1 295 -17 356 249 171 63 chr1 30363030 30363108 -251830556 - MIR SINE MIR 0 262 194 1972 137 0 23 chr1 30363108 30363408 -251830256 - AluJb SINE Alu -19 293 1 356 249 171 63 chr1 30363408 30363565 -251830099 - MIR SINE MIR -68 194 3 2225 82 7 7 chr1 30363589 30363882 -251829782 + AluSx SINE Alu 20 312 0 2179 93 3 20 chr1 30363987 30364287 -251829377 + AluSp SINE Alu 1 295 -18 2286 97 10 0 chr1 30364446 30364755 -251828909 + AluSx SINE Alu 1 312 0 1333 193 8 4 chr1 30365054 30365292 -251828372 + AluJo SINE Alu 37 275 -37 2050 116 3 23 chr1 30365359 30365669 -251827995 - AluSx SINE Alu -8 304 1 2438 88 0 7 chr1 30366166 30366473 -251827191 - AluSg SINE Alu -5 305 1 1103 247 129 53 chr1 30366622 30367096 -251826568 + L2 LINE L2 2804 3313 0 237 370 50 10 chr1 30367109 30367209 -251826455 - L2 LINE L2 -37 3235 3132 1837 161 0 11 chr1 30367327 30367646 -251826018 - AluJo SINE Alu 0 316 1 498 285 151 0 chr1 30367702 30367888 -251825776 + MIR SINE MIR 47 260 -2 199 310 71 59 chr1 30368108 30368363 -251825301 + L2 LINE L2 2804 3061 -211 2007 147 0 0 chr1 30368506 30368798 -251824866 + AluJb SINE Alu 1 292 -20 803 178 96 77 chr1 30369190 30369398 -251824266 + AluJo SINE Alu 87 298 -14 885 150 15 0 chr1 30369419 30369552 -251824112 + AluJo SINE Alu 1 135 -177 201 147 0 0 chr1 30370962 30370996 -251822668 + (CTGGGG)n Simple_repeat Simple_repeat 4 37 0 262 211 53 0 chr1 30371514 30371571 -251822093 - MIR SINE MIR -98 164 105 198 0 0 0 chr1 30371897 30371919 -251821745 + (CACCC)n Simple_repeat Simple_repeat 1 22 0 1554 150 8 0 chr1 30372015 30372269 -251821395 - AluJb SINE Alu -6 306 51 2371 71 0 0 chr1 30372385 30372690 -251820974 - AluSx SINE Alu 0 305 1 1538 129 0 13 chr1 30372915 30373148 -251820516 + AluJb SINE Alu 1 230 -82 23 0 0 0 chr1 30373220 30373243 -251820421 + AT_rich Low_complexity Low_complexity 1 23 0 2305 185 59 5 chr1 30373297 30373776 -251819888 - LTR65 LTR ERV1 0 632 167 366 227 91 0 chr1 30373837 30373925 -251819739 - MIR SINE MIR -111 151 56 325 141 136 0 chr1 30373926 30374017 -251819647 + L1ME3A LINE L1 5604 5714 -456 1764 139 0 4 chr1 30374073 30374332 -251819332 - AluJb SINE Alu -54 258 1 1833 194 37 57 chr1 30374343 30374545 -251819119 - L1ME2 LINE L1 -1 6163 5959 1922 116 3 55 chr1 30374545 30374856 -251818808 - AluSx SINE Alu -15 297 3 1833 194 37 57 chr1 30374856 30375113 -251818551 - L1ME2 LINE L1 -205 5959 5713 382 244 169 12 chr1 30375108 30375280 -251818384 + L1ME3A LINE L1 5691 5889 -275 * 1185 140 5 11 chr1 30375280 30375466 -251818198 + AluJo SINE Alu 127 311 -1 445 192 10 19 chr1 30375467 30375571 -251818093 + L1ME3A LINE L1 5874 5976 -194 1580 148 4 0 chr1 30375571 30375807 -251817857 + AluSx SINE Alu 1 237 -75 3071 178 34 54 chr1 30375908 30376342 -251817322 + L1ME1 LINE L1 5514 5932 -234 2240 104 3 0 chr1 30376342 30376639 -251817025 - AluSp SINE Alu -15 298 1 3071 178 34 54 chr1 30376639 30376855 -251816809 + L1ME1 LINE L1 5932 6151 -15 281 191 16 16 chr1 30377123 30377186 -251816478 - MIR SINE MIR -1 261 199 977 154 0 77 chr1 30377186 30377333 -251816331 + FRAM SINE Alu 1 131 -181 2333 97 0 0 chr1 30377333 30377631 -251816033 - AluSc SINE Alu -11 298 1 977 154 0 77 chr1 30377631 30377665 -251815999 + FRAM SINE Alu 131 166 -10 224 114 159 0 chr1 30377669 30377713 -251815951 - MIR SINE MIR -56 206 156 795 189 61 39 chr1 30377955 30378135 -251815529 + MLT1F LTR MaLR 1 184 -358 309 213 16 0 chr1 30378168 30378229 -251815435 + MLT1G1 LTR MaLR 1 62 -533 1325 187 0 4 chr1 30378249 30378474 -251815190 - LTR47B LTR ERVL -6 437 214 1147 79 0 0 chr1 30378598 30378737 -251814927 - AluSg SINE Alu -171 139 1 2336 112 0 0 chr1 30378843 30379155 -251814509 + AluSx SINE Alu 1 312 0 2212 128 0 0 chr1 30379163 30379475 -251814189 + AluSx SINE Alu 1 312 0 23 33 0 0 chr1 30379701 30379731 -251813933 + AT_rich Low_complexity Low_complexity 1 30 0 1705 168 21 11 chr1 30379743 30380028 -251813636 + AluJb SINE Alu 1 288 -24 2130 112 7 10 chr1 30380036 30380332 -251813332 + AluSx SINE Alu 1 295 -17 371 250 62 0 chr1 30380379 30380475 -251813189 + L2 LINE L2 3187 3288 -25 1553 150 59 11 chr1 30380500 30380773 -251812891 + AluJo SINE Alu 1 286 -26 2059 113 0 10 chr1 30382097 30382398 -251811266 - AluSx SINE Alu -14 298 1 21 0 0 0 chr1 30382881 30382902 -251810762 + AT_rich Low_complexity Low_complexity 1 21 0 186 71 0 0 chr1 30383114 30383142 -251810522 + (A)n Simple_repeat Simple_repeat 1 28 0 342 205 0 0 chr1 30383177 30383260 -251810404 + A-rich Low_complexity Low_complexity 1 83 0 1693 167 13 16 chr1 30384005 30384311 -251809353 + AluJo SINE Alu 1 305 -7 508 263 98 58 chr1 30384770 30384975 -251808689 - MIR SINE MIR 0 262 50 1626 158 3 52 chr1 30385260 30385588 -251808076 + AluJb SINE Alu 1 312 0 484 221 136 14 chr1 30385774 30385914 -251807750 + MIR3 SINE MIR 6 162 -46 2307 68 0 3 chr1 30386087 30386383 -251807281 - AluY SINE Alu -16 295 1 2057 118 0 7 chr1 30386409 30386714 -251806950 + AluSx SINE Alu 1 303 -9 1097 125 17 23 chr1 30386716 30386892 -251806772 + AluSg/x SINE Alu 134 308 -2 414 192 0 0 chr1 30386892 30386970 -251806694 + MIR SINE MIR 185 262 0 1810 162 3 7 chr1 30386997 30387300 -251806364 - AluJb SINE Alu -10 302 1 1730 120 105 0 chr1 30387487 30387763 -251805901 + AluSx SINE Alu 1 305 -7 1604 190 3 7 chr1 30388203 30388508 -251805156 + AluJo SINE Alu 1 304 -8 2464 68 3 0 chr1 30389672 30389981 -251803683 + AluSp SINE Alu 1 310 -3 2275 75 0 53 chr1 30390880 30391200 -251802464 - AluSp SINE Alu -10 303 1 502 320 41 6 chr1 30391279 30391451 -251802213 - L3 LINE CR1 -107 1470 1293 353 277 72 54 chr1 30391837 30392003 -251801661 + L1MCa LINE L1 2228 2396 -4030 1616 139 110 0 chr1 30392004 30392277 -251801387 + AluJo SINE Alu 1 303 -9 1944 156 10 0 chr1 30392277 30392583 -251801081 + AluJb SINE Alu 1 310 -2 1527 152 82 4 chr1 30392921 30393191 -251800473 - AluJb SINE Alu -21 291 1 1750 144 43 0 chr1 30394422 30394700 -251798964 + AluSx SINE Alu 1 290 -22 2071 80 0 32 chr1 30395297 30395608 -251798056 + AluY SINE Alu 1 301 -10 2471 56 3 0 chr1 30395654 30395957 -251797707 + AluY SINE Alu 1 304 -7 293 266 67 53 chr1 30395962 30396131 -251797533 - MIR SINE MIR -56 206 31 2043 113 7 16 chr1 30396134 30396443 -251797221 - AluSx SINE Alu -6 306 1 361 257 30 0 chr1 30396612 30396713 -251796951 + L2 LINE L2 1914 2017 -1297 374 259 30 52 chr1 30396844 30396979 -251796685 + MER5A DNA MER1_type 2 133 -56 1488 189 10 7 chr1 30396980 30397271 -251796393 - AluJo SINE Alu -8 304 13 2043 121 0 19 chr1 30397324 30397637 -251796027 - AluSg SINE Alu -3 307 1 604 312 123 44 chr1 30397721 30398592 -251795072 + L2 LINE L2 2332 3271 -1 508 249 157 11 chr1 30398624 30398809 -251794855 - MIR SINE MIR -3 259 48 325 307 17 4 chr1 30399458 30399640 -251794024 + MIR SINE MIR 3 249 -13 2147 93 0 0 chr1 30399651 30399965 -251793699 + AluSc SINE Alu 1 314 0 853 195 24 18 chr1 30400118 30400287 -251793377 - FRAM SINE Alu -10 166 1 1885 151 3 3 chr1 30400297 30400595 -251793069 - AluJb SINE Alu -14 298 1 1274 188 12 23 chr1 30400658 30400914 -251792750 + AluJb SINE Alu 35 287 -25 1300 98 38 87 chr1 30400927 30400995 -251792669 - L1MA8 LINE L1 -53 6238 6168 2096 105 0 16 chr1 30400995 30401299 -251792365 - AluSg SINE Alu -11 299 1 1300 98 38 87 chr1 30401299 30401496 -251792168 - L1MA8 LINE L1 -123 6168 5986 280 356 87 20 chr1 30401624 30401773 -251791891 - MER91A DNA MER1_type -20 176 18 265 303 245 5 chr1 30401973 30402181 -251791483 + L2 LINE L2 2473 2730 -584 2061 120 0 10 chr1 30402181 30402480 -251791184 - AluSx SINE Alu -16 296 1 1395 160 149 4 chr1 30402622 30402884 -251790780 + AluJb SINE Alu 5 304 -8 2176 66 16 26 chr1 30402924 30403229 -251790435 - AluSp SINE Alu -9 304 3 1857 132 0 3 chr1 30404285 30404573 -251789091 - AluJb SINE Alu -25 287 1 964 299 116 24 chr1 30405016 30405486 -251788178 + L2 LINE L2 2791 3303 -10 2007 94 47 0 chr1 30405564 30405868 -251787796 - AluSg SINE Alu 0 317 1 743 154 24 24 chr1 30405876 30405999 -251787665 - FLAM_A SINE Alu -10 123 1 1516 170 6 61 chr1 30406011 30406186 -251787478 - AluJo SINE Alu -16 296 144 2134 109 0 31 chr1 30406186 30406508 -251787156 - AluSx SINE Alu 0 312 1 1516 170 6 61 chr1 30406508 30406644 -251787020 - AluJo SINE Alu -168 144 2 2178 108 3 9 chr1 30406829 30407144 -251786520 + AluSp SINE Alu 1 313 0 1920 95 0 115 chr1 30407151 30407489 -251786175 + AluSx SINE Alu 1 299 -13 723 264 109 0 chr1 30407538 30407731 -251785933 - MIR SINE MIR -17 245 32 2047 119 0 7 chr1 30407743 30408028 -251785636 - AluSg SINE Alu -17 293 11 328 304 99 19 chr1 30408218 30408379 -251785285 - MIR SINE MIR -12 250 77 896 258 191 15 chr1 30408630 30409139 -251784525 - L2 LINE L2 -2 3311 2710 2190 96 0 7 chr1 30409511 30409812 -251783852 - AluSc SINE Alu -10 299 1 2076 95 20 7 chr1 30410206 30410512 -251783152 - AluSx SINE Alu -2 310 1 186 43 0 0 chr1 30410570 30410593 -251783071 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 2057 111 19 7 chr1 30410847 30411154 -251782510 + AluSx SINE Alu 2 312 0 1880 152 7 10 chr1 30411627 30411930 -251781734 - AluSx SINE Alu -10 302 1 2234 92 0 0 chr1 30411956 30412249 -251781415 + AluSq SINE Alu 1 293 -20 2233 94 10 7 chr1 30412572 30412879 -251780785 + AluSq SINE Alu 1 308 -5 634 206 113 25 chr1 30413100 30413260 -251780404 + AluJo SINE Alu 125 298 -14 27 0 0 0 chr1 30413354 30413381 -251780283 + AT_rich Low_complexity Low_complexity 1 27 0 2242 103 3 0 chr1 30413592 30413904 -251779760 + AluSp SINE Alu 1 313 0 247 226 0 16 chr1 30413919 30413981 -251779683 - L1P LINE L1 -1136 5010 4950 * 831 220 34 34 chr1 30413979 30414307 -251779357 + L1ME2 LINE L1 4961 6153 -11 387 239 70 94 chr1 30414355 30414556 -251779108 + L1MC4 LINE L1 7830 8025 -17 1609 169 3 10 chr1 30414568 30414870 -251778794 + AluJb SINE Alu 1 300 -12 2065 121 0 7 chr1 30415100 30415398 -251778266 - AluSx SINE Alu -16 296 1 1618 179 3 3 chr1 30415427 30415718 -251777946 + AluJb SINE Alu 3 293 -19 2148 105 7 7 chr1 30415972 30416277 -251777387 + AluSg SINE Alu 1 305 -5 274 137 39 0 chr1 30416338 30416389 -251777275 + L1M4 LINE L1 4963 5015 -1131 316 234 139 3 chr1 30416673 30416798 -251776866 + MIR SINE MIR 46 192 -69 260 279 82 0 chr1 30416862 30416923 -251776741 + MIR SINE MIR 29 94 -114 23 0 0 0 chr1 30416951 30416974 -251776690 + AT_rich Low_complexity Low_complexity 1 23 0 22 70 0 0 chr1 30417999 30418042 -251775622 + GC_rich Low_complexity Low_complexity 1 43 0 206 213 0 0 chr1 30418103 30418150 -251775514 + (CGGGG)n Simple_repeat Simple_repeat 2 48 0 303 333 36 0 chr1 30419300 30419411 -251774253 + MIR SINE MIR 32 146 -62 1620 142 0 66 chr1 30419444 30419536 -251774128 + AluJb SINE Alu 5 102 -210 2125 84 3 36 chr1 30419536 30419845 -251773819 + AluSx SINE Alu 1 299 -13 1620 142 0 66 chr1 30419845 30420054 -251773610 + AluJb SINE Alu 102 286 -26 882 113 22 108 chr1 30420089 30420191 -251773473 + L1MB5 LINE L1 5997 6106 -68 2157 75 3 53 chr1 30420191 30420510 -251773154 - AluSx SINE Alu -9 303 1 2145 104 7 0 chr1 30420510 30420807 -251772857 - AluSx SINE Alu -12 300 1 882 113 22 108 chr1 30420807 30420888 -251772776 + L1MB5 LINE L1 6104 6165 -9 1490 164 7 44 chr1 30420905 30421067 -251772597 - AluJb SINE Alu -25 287 139 2243 94 0 0 chr1 30421067 30421366 -251772298 - AluSg SINE Alu -11 299 1 1490 164 7 44 chr1 30421366 30421501 -251772163 - AluJb SINE Alu -173 139 1 2110 113 3 7 chr1 30421539 30421849 -251771815 + AluSx SINE Alu 1 309 -3 305 261 31 0 chr1 30421859 30421924 -251771740 + MIR SINE MIR 36 102 -160 37 0 0 0 chr1 30422228 30422265 -251771399 + AT_rich Low_complexity Low_complexity 1 37 0 1964 96 0 76 chr1 30422267 30422581 -251771083 - AluSq SINE Alu -23 290 1 1823 131 0 4 chr1 30422583 30422857 -251770807 - AluSx SINE Alu -19 293 21 399 173 34 64 chr1 30422857 30422991 -251770673 - AluJ/FLAM SINE Alu -233 69 1 1561 278 118 58 chr1 30423002 30423091 -251770573 - L2 LINE L2 -1 3312 3230 1570 184 10 0 chr1 30423091 30423384 -251770280 + AluJb SINE Alu 1 296 -16 1414 142 110 0 chr1 30423394 30423648 -251770016 + AluJo SINE Alu 1 282 -30 186 43 0 0 chr1 30423652 30423675 -251769989 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1561 278 118 58 chr1 30423675 30424136 -251769528 - L2 LINE L2 -93 3220 2788 850 152 0 8 chr1 30424136 30424268 -251769396 - FLAM_C SINE Alu -2 131 1 1561 278 118 58 chr1 30424268 30424795 -251768869 - L2 LINE L2 -525 2788 2153 2131 107 13 7 chr1 30424813 30425121 -251768543 - AluSg SINE Alu 0 310 1 527 263 38 15 chr1 30425158 30425291 -251768373 - L2 LINE L2 0 3272 3137 261 247 0 0 chr1 30425292 30425365 -251768299 + (TA)n Simple_repeat Simple_repeat 2 74 0 214 195 91 13 chr1 30425369 30425446 -251768218 - L2 LINE L2 -148 3165 3083 1379 169 79 48 chr1 30425454 30425603 -251768061 - L1MB4 LINE L1 -1 6165 6022 1475 137 0 87 chr1 30425603 30425903 -251767761 + AluJb SINE Alu 22 295 -17 1379 169 79 48 chr1 30425903 30426191 -251767473 - L1MB4 LINE L1 -144 6022 5729 740 107 0 126 chr1 30426191 30426350 -251767314 - MLT1A1 LTR MaLR 0 365 227 886 150 0 26 chr1 30426407 30426560 -251767104 - FRAM SINE Alu -15 161 13 999 202 34 22 chr1 30426560 30426797 -251766867 - L1MB4 LINE L1 -817 5329 5087 1926 129 20 3 chr1 30426797 30427099 -251766565 + AluSx SINE Alu 1 307 -5 999 202 34 22 chr1 30427099 30427128 -251766536 - L1MB4 LINE L1 -1059 5087 5060 1844 230 160 94 chr1 30427129 30427486 -251766178 - L2 LINE L2 -774 2540 2208 1184 214 173 18 chr1 30427486 30427827 -251765837 - MSTD LTR MaLR -2 394 1 1844 230 160 94 chr1 30427827 30428292 -251765372 - L2 LINE L2 -1106 2208 1775 1967 117 7 23 chr1 30428292 30428451 -251765213 - AluSx SINE Alu -18 294 134 188 33 0 33 chr1 30428451 30428481 -251765183 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2318 58 7 3 chr1 30428483 30428775 -251764889 - AluSp SINE Alu -20 293 1 1967 117 7 23 chr1 30428775 30428911 -251764753 - AluSx SINE Alu -179 133 1 1844 230 160 94 chr1 30428911 30429131 -251764533 - L2 LINE L2 -1539 1775 1428 1864 164 3 0 chr1 30429131 30429429 -251764235 - AluJb SINE Alu -13 299 1 1582 181 7 3 chr1 30429429 30429716 -251763948 - AluJo SINE Alu -19 293 6 228 259 24 94 chr1 30430006 30430157 -251763507 - MLT1J2 LTR MaLR -9 441 302 4133 91 39 5 chr1 30430157 30430718 -251762946 - LTR19B LTR ERV1 0 580 1 228 259 24 94 chr1 30430718 30430736 -251762928 - MLT1J2 LTR MaLR -148 302 284 1042 231 179 46 chr1 30430790 30431141 -251762523 + L2 LINE L2 2138 2535 -779 2732 221 78 14 chr1 30431259 30431584 -251762080 + Zaphod DNA AcHobo 39 342 -3689 2221 98 3 0 chr1 30431584 30431889 -251761775 + AluSp SINE Alu 1 306 -7 2732 221 78 14 chr1 30431889 30432279 -251761385 + Zaphod DNA AcHobo 342 800 -3231 1753 177 3 3 chr1 30432291 30432601 -251761063 - AluJb SINE Alu -2 310 1 2292 83 3 6 chr1 30432610 30432922 -251760742 - AluY SINE Alu 0 311 1 905 194 6 0 chr1 30432932 30433102 -251760562 - AluJo SINE Alu -21 291 121 742 176 0 21 chr1 30433145 30433287 -251760377 + FLAM_C SINE Alu 2 140 -3 330 103 56 95 chr1 30433292 30433394 -251760270 + Zaphod DNA AcHobo 870 968 -3063 2219 113 0 0 chr1 30433394 30433696 -251759968 - AluSx SINE Alu -10 302 1 330 103 56 95 chr1 30433696 30433717 -251759947 + Zaphod DNA AcHobo 968 988 -3043 1303 157 29 9 chr1 30433717 30433927 -251759737 - MER58A DNA MER1_type 0 224 11 2011 132 0 3 chr1 30433952 30434248 -251759416 + AluSx SINE Alu 1 295 -17 473 98 0 0 chr1 30434251 30434312 -251759352 + Alu SINE Alu 2 62 -256 502 86 29 0 chr1 30434412 30434482 -251759182 - AluSq/x SINE Alu -174 138 67 1140 180 0 5 chr1 30434482 30434682 -251758982 - AluSx SINE Alu -113 199 1 798 164 0 0 chr1 30434706 30434834 -251758830 - FLAM_C SINE Alu -2 141 14 1953 109 0 51 chr1 30434916 30435228 -251758436 + AluSc SINE Alu 1 296 -13 305 252 222 22 chr1 30435359 30435589 -251758075 - L1ME4a LINE L1 -235 5886 5611 1145 88 0 35 chr1 30435612 30435783 -251757881 + AluSg/x SINE Alu 137 301 -11 1239 161 118 18 chr1 30437305 30437584 -251756080 + AluJo SINE Alu 1 307 -5 534 266 123 32 chr1 30437584 30437988 -251755676 - L2 LINE L2 -18 3295 2767 2340 52 0 58 chr1 30438015 30438342 -251755322 - AluY SINE Alu -3 308 1 1407 116 0 0 chr1 30438343 30438541 -251755123 - AluSg/x SINE Alu -22 290 93 825 282 67 30 chr1 30438584 30438985 -251754679 - L2 LINE L2 -1160 2154 1739 2150 98 0 3 chr1 30439864 30440161 -251753503 + AluSx SINE Alu 1 296 -16 1666 153 7 17 chr1 30440174 30440461 -251753203 + AluJb SINE Alu 13 296 -16 197 204 93 0 chr1 30440922 30440976 -251752688 + MIR SINE MIR 116 174 -88 423 308 82 19 chr1 30442316 30442475 -251751189 + MIR SINE MIR 47 215 -47 2269 82 0 0 chr1 30442759 30443051 -251750613 + AluY SINE Alu 1 292 -19 2112 104 3 0 chr1 30443408 30443705 -251749959 - AluY SINE Alu 0 311 14 328 226 19 66 chr1 30444492 30444505 -251749159 - Charlie7 DNA MER1_type -2511 101 89 822 142 0 30 chr1 30444505 30444639 -251749025 + FLAM_C SINE Alu 1 130 -3 328 226 19 66 chr1 30444639 30444731 -251748933 - Charlie7 DNA MER1_type -2523 89 1 1757 117 37 40 chr1 30444869 30444964 -251748700 + AluSx SINE Alu 1 95 -217 2150 80 40 0 chr1 30444964 30445263 -251748401 + AluSp SINE Alu 1 311 -2 1757 117 37 40 chr1 30445263 30445466 -251748198 + AluSx SINE Alu 95 298 -14 377 82 16 0 chr1 30445649 30445710 -251747954 + L1PB2 LINE L1 6090 6151 0 3161 166 2 2 chr1 30445718 30446253 -251747411 - MSTB-int LTR MaLR -1116 535 1 310 90 11 214 chr1 30446253 30446298 -251747366 - MSTB LTR MaLR 0 426 374 2257 101 0 0 chr1 30446298 30446605 -251747059 + AluSc SINE Alu 1 307 -2 1931 112 4 0 chr1 30446610 30446879 -251746785 + AluSc SINE Alu 1 270 -39 310 90 11 214 chr1 30446879 30446916 -251746748 - MSTB LTR MaLR -56 370 356 1047 148 22 181 chr1 30446916 30447319 -251746345 + AluYb8 SINE Alu 1 318 0 1581 195 10 0 chr1 30447321 30447619 -251746045 + AluJo SINE Alu 3 303 -9 1522 118 156 7 chr1 30447671 30447941 -251745723 + AluSq SINE Alu 2 311 -2 1129 186 4 26 chr1 30447942 30448168 -251745496 + AluJb SINE Alu 87 307 -5 661 223 56 33 chr1 30448234 30448492 -251745172 + MER66-int LTR ERV1 1889 2140 -4536 1596 179 3 3 chr1 30448492 30448783 -251744881 + AluJo SINE Alu 1 291 -21 661 223 56 33 chr1 30448783 30448837 -251744827 + MER66-int LTR ERV1 2140 4073 -2603 1838 168 96 3 chr1 30449137 30449470 -251744194 + MSTA LTR MaLR 1 364 -64 219 36 0 0 chr1 30449470 30449498 -251744166 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1172 106 0 119 chr1 30449631 30449857 -251743807 - AluSq SINE Alu -114 199 1 21 0 0 0 chr1 30449857 30449878 -251743786 + AT_rich Low_complexity Low_complexity 1 21 0 1233 99 33 11 chr1 30449919 30450122 -251743542 - AluSg/x SINE Alu 0 306 100 425 210 75 70 chr1 30450165 30450205 -251743459 - MER65A-int LTR ERV1 -2363 2508 2470 2251 112 0 0 chr1 30450205 30450517 -251743147 - AluSq SINE Alu -1 312 1 425 210 75 70 chr1 30450517 30450986 -251742678 - MER65A-int LTR ERV1 -2401 2470 1563 1900 214 88 68 chr1 30450986 30451672 -251741992 - MER65A-int LTR ERV1 -4162 709 11 2178 132 23 94 chr1 30451678 30451810 -251741854 - MER65A LTR ERV1 0 445 305 2073 48 0 0 chr1 30451810 30452081 -251741583 - AluY SINE Alu 0 307 37 2178 132 23 94 chr1 30452081 30452139 -251741525 - MER65A LTR ERV1 -140 305 244 2305 88 0 0 chr1 30452139 30452446 -251741218 - AluY SINE Alu -4 307 1 2178 132 23 94 chr1 30452446 30452732 -251740932 - MER65A LTR ERV1 -201 244 1 262 241 17 0 chr1 30452736 30452794 -251740870 + L2 LINE L2 2552 2610 -704 2166 251 85 26 chr1 30452801 30453414 -251740250 + MLT2F LTR ERVL 7 655 -8 399 185 423 0 chr1 30453416 30453546 -251740118 + L2 LINE L2 2604 2788 -526 2426 87 0 0 chr1 30454086 30454398 -251739266 + AluSx SINE Alu 1 312 0 378 380 27 49 chr1 30454400 30454766 -251738898 + HERV16 LTR ERVL 425 782 -4214 361 184 193 55 chr1 30454999 30455108 -251738556 + MLT1H LTR MaLR 3 126 -423 344 236 107 18 chr1 30455109 30455223 -251738441 + MLT1G1 LTR MaLR 426 595 0 2056 77 0 7 chr1 30455319 30455593 -251738071 - AluSg SINE Alu 0 310 39 254 274 73 40 chr1 30455679 30455803 -251737861 + HERV16 LTR ERVL 1299 1426 -4228 27 0 0 0 chr1 30455995 30456022 -251737642 + AT_rich Low_complexity Low_complexity 1 27 0 666 125 80 0 chr1 30456095 30456207 -251737457 - FRAM SINE Alu -12 164 44 660 291 67 32 chr1 30456213 30456556 -251737108 + HERV16 LTR ERVL 1733 2087 -2909 330 270 34 22 chr1 30456542 30456631 -251737033 + HERV16 LTR ERVL 2189 2278 -3486 * 264 170 43 0 chr1 30456634 30456681 -251736983 - MLT2D LTR ERVL 0 414 366 207 204 0 0 chr1 30456683 30456727 -251736937 + (TATATG)n Simple_repeat Simple_repeat 3 46 0 794 119 0 0 chr1 30456727 30456836 -251736828 + MER7A DNA MER2_type 1 107 -239 1331 128 0 0 chr1 30456936 30457123 -251736541 + MER7A DNA MER2_type 148 334 -2 2427 68 0 3 chr1 30457142 30457449 -251736215 - AluY SINE Alu -5 306 1 3526 175 67 24 chr1 30457520 30457835 -251735829 + MER21B LTR ERV1 1 301 -562 1612 168 19 23 chr1 30457835 30458144 -251735520 + AluJb SINE Alu 1 308 -4 3526 175 67 24 chr1 30458144 30458486 -251735178 + MER21B LTR ERV1 301 686 -177 3814 119 2 7 chr1 30458486 30458846 -251734818 + MER41B LTR ERV1 3 363 -272 1967 118 4 0 chr1 30458846 30459151 -251734513 + AluSx SINE Alu 5 310 0 2251 96 0 0 chr1 30459151 30459452 -251734212 + AluSg SINE Alu 1 301 -9 3814 119 2 7 chr1 30459452 30459634 -251734030 + MER41B LTR ERV1 361 544 -91 2379 73 7 0 chr1 30459653 30459956 -251733708 + AluSc SINE Alu 2 306 -3 2271 78 0 0 chr1 30459962 30460255 -251733409 + AluSq SINE Alu 5 297 -16 20267 121 19 34 chr1 30460257 30460708 -251732956 + MER41B-int LTR ERV1 2596 3053 -2893 689 118 20 0 chr1 30460708 30460810 -251732854 - U6 snRNA snRNA -3 104 1 20267 121 19 34 chr1 30460810 30463762 -251729902 + MER41B-int LTR ERV1 3053 5946 0 3874 130 39 19 chr1 30463762 30464385 -251729279 + MER41B LTR ERV1 1 635 0 771 163 42 20 chr1 30464385 30464552 -251729112 + MER21A LTR ERV1 681 891 -1 4312 185 43 4 chr1 30464568 30465350 -251728314 + MER21A-int LTR ERV1 2 814 -3377 246 267 0 86 chr1 30465350 30465455 -251728209 + MER34 LTR ERV1 1 96 -446 1404 166 94 107 chr1 30465488 30465664 -251728000 + LTR29 LTR ERV1 160 337 -285 1300 207 81 0 chr1 30465664 30465935 -251727729 - AluJo SINE Alu -19 293 1 1404 166 94 107 chr1 30465935 30466227 -251727437 + LTR29 LTR ERV1 337 622 0 693 161 18 0 chr1 30466228 30466340 -251727324 + MER21-int LTR ERV1 3835 3948 -2810 2403 141 48 52 chr1 30466340 30466800 -251726864 + LTR32 LTR ERVL 14 471 0 1124 213 8 46 chr1 30466800 30467063 -251726601 + MER21-int LTR ERV1 3943 4195 -2563 342 107 27 27 chr1 30469409 30469484 -251724180 + GA-rich Low_complexity Low_complexity 3 77 0 454 182 36 103 chr1 30469485 30469650 -251724014 + MER21-int LTR ERV1 1194 4233 -2525 * 1599 200 21 8 chr1 30469617 30469657 -251724007 + MER21-int LTR ERV1 1314 1352 -5406 2270 104 0 0 chr1 30469657 30469966 -251723698 - AluSx SINE Alu -3 309 1 1599 200 21 8 chr1 30469966 30470266 -251723398 + MER21-int LTR ERV1 1352 4509 -2249 32 0 0 0 chr1 30471032 30471064 -251722600 + AT_rich Low_complexity Low_complexity 1 32 0 1069 130 125 0 chr1 30471070 30471254 -251722410 + AluJo SINE Alu 87 293 -19 2058 110 0 0 chr1 30471256 30471569 -251722095 + AluSx SINE Alu 1 313 0 752 183 14 7 chr1 30471589 30471731 -251721933 + AluJb SINE Alu 145 287 -25 564 88 0 0 chr1 30471748 30471828 -251721836 - L1MB5 LINE L1 -9 6165 6086 2136 104 7 0 chr1 30471829 30472126 -251721538 + AluSx SINE Alu 1 299 -13 2140 76 3 54 chr1 30472126 30472442 -251721222 + AluSx SINE Alu 1 301 -11 553 276 148 36 chr1 30472550 30472880 -251720784 - L2 LINE L2 -493 2821 2455 231 218 18 0 chr1 30472880 30472935 -251720729 - L2 LINE L2 0 3313 3258 285 283 109 51 chr1 30472991 30473129 -251720535 + MIR3 SINE MIR 18 163 -45 183 318 24 12 chr1 30473193 30473278 -251720386 + MIR SINE MIR 59 144 -118 190 234 0 0 chr1 30473628 30473675 -251719989 + L2 LINE L2 2721 2767 -547 324 276 82 29 chr1 30473935 30474105 -251719559 + L2 LINE L2 2832 3010 -262 2369 89 0 3 chr1 30474127 30474440 -251719224 + AluSx SINE Alu 1 312 0 818 149 0 0 chr1 30474572 30474693 -251718971 + AluJo/FLAM SINE Alu 9 129 -183 1799 91 14 22 chr1 30474693 30474969 -251718695 - AluSp SINE Alu -19 294 21 768 251 170 115 chr1 30475071 30475522 -251718142 - L2 LINE L2 -1178 2136 1711 1950 113 7 24 chr1 30475522 30475673 -251717991 - AluSx SINE Alu -26 286 134 188 33 0 33 chr1 30475673 30475703 -251717961 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2318 58 7 3 chr1 30475705 30475997 -251717667 - AluSp SINE Alu -20 293 1 1950 113 7 24 chr1 30475997 30476133 -251717531 - AluSx SINE Alu -179 133 1 768 251 170 115 chr1 30476133 30476353 -251717311 - L2 LINE L2 -1603 1711 1428 1864 164 3 0 chr1 30476353 30476651 -251717013 - AluJb SINE Alu -13 299 1 1582 181 7 3 chr1 30476651 30476938 -251716726 - AluJo SINE Alu -18 294 6 4127 93 39 5 chr1 30477379 30477940 -251715724 - LTR19B LTR ERV1 0 580 1 1038 231 179 46 chr1 30478012 30478363 -251715301 + L2 LINE L2 2138 2535 -779 2519 225 78 14 chr1 30478481 30478806 -251714858 + Zaphod DNA AcHobo 39 342 -3689 2369 98 3 0 chr1 30478806 30479111 -251714553 + AluSp SINE Alu 1 306 -7 2519 225 78 14 chr1 30479111 30479501 -251714163 + Zaphod DNA AcHobo 342 800 -3231 1931 174 3 3 chr1 30479513 30479823 -251713841 - AluJb SINE Alu -2 310 1 2356 93 0 10 chr1 30479832 30480143 -251713521 - AluSg SINE Alu 0 310 3 1209 173 48 5 chr1 30480194 30480402 -251713262 - AluJo SINE Alu -12 300 84 817 203 66 16 chr1 30480799 30480981 -251712683 + MER58A DNA MER1_type 1 191 -33 558 262 182 19 chr1 30481689 30481903 -251711761 + MIR SINE MIR 14 262 0 2211 108 14 0 chr1 30481993 30482281 -251711383 - AluSx SINE Alu -20 292 1 1062 133 28 11 chr1 30482281 30482461 -251711203 - THE1B LTR MaLR -181 183 1 10264 66 25 113 chr1 30482461 30483554 -251710110 - THE1B-int LTR MaLR 0 1580 695 2408 103 3 0 chr1 30483554 30483866 -251709798 - AluSp SINE Alu 0 313 1 10264 66 25 113 chr1 30483866 30484505 -251709159 - THE1B-int LTR MaLR -885 695 1 2423 120 19 25 chr1 30484505 30484871 -251708793 - THE1B LTR MaLR 0 364 1 950 128 0 0 chr1 30484885 30485018 -251708646 - FLAM_C SINE Alu 0 133 1 798 256 55 35 chr1 30485020 30485332 -251708332 - LTR24B LTR ERV1 -189 387 70 1832 190 103 22 chr1 30485336 30485784 -251707880 + LTR2B LTR ERV1 7 490 0 3203 162 75 32 chr1 30485849 30486312 -251707352 - MER21-int LTR ERV1 -1742 2449 1948 2070 143 0 16 chr1 30486312 30486627 -251707037 - AluSx SINE Alu -2 310 1 3203 162 75 32 chr1 30486627 30486816 -251706848 - MER21-int LTR ERV1 -2243 1948 1769 942 245 122 15 chr1 30486925 30487260 -251706404 + L2 LINE L2 2170 2540 -774 939 206 34 22 chr1 30487261 30487290 -251706374 + L1MB4 LINE L1 5060 5087 -1059 1951 146 20 3 chr1 30487290 30487591 -251706073 - AluSx SINE Alu -6 306 1 939 206 34 22 chr1 30487591 30487828 -251705836 + L1MB4 LINE L1 5087 5329 -817 953 151 0 26 chr1 30487828 30487980 -251705684 + FRAM SINE Alu 13 160 -16 688 111 1 120 chr1 30488027 30488196 -251705468 + MLT1A1 LTR MaLR 227 365 0 1276 142 83 35 chr1 30488196 30488484 -251705180 + L1MB4 LINE L1 5729 6030 -150 1748 128 3 84 chr1 30488484 30488804 -251704860 - AluJb SINE Alu -17 295 2 819 300 47 25 chr1 30488866 30489356 -251704308 - L1M4 LINE L1 -893 5253 4753 2175 108 0 0 chr1 30489357 30489656 -251704008 - AluSx SINE Alu 0 301 3 1170 141 0 22 chr1 30489662 30489846 -251703818 - AluSc SINE Alu -1 308 129 2289 112 3 0 chr1 30489852 30490155 -251703509 - AluSx SINE Alu -8 304 1 1112 128 0 0 chr1 30490280 30490429 -251703235 + AluJb SINE Alu 132 280 -32 5028 121 47 87 chr1 30490471 30491493 -251702171 - MER21-int LTR ERV1 -51 4140 3160 1330 137 0 15 chr1 30491502 30491699 -251701965 - AluJb SINE Alu 0 312 119 818 131 7 15 chr1 30491701 30491838 -251701826 - AluSg/x SINE Alu -12 298 163 2199 84 47 7 chr1 30491858 30492157 -251701507 - AluY SINE Alu 0 311 1 851 79 0 0 chr1 30492192 30492306 -251701358 + L1PA8 LINE L1 6058 6171 -1 2209 122 14 0 chr1 30492332 30492626 -251701038 + AluSx SINE Alu 1 298 -14 553 165 0 0 chr1 30492683 30492774 -251700890 + MER21B LTR ERV1 288 378 -485 377 171 71 0 chr1 30492785 30492855 -251700809 + MER21B LTR ERV1 34 108 -755 783 212 0 0 chr1 30492855 30492987 -251700677 - FLAM_A SINE Alu -5 137 6 2613 142 172 75 chr1 30492987 30493526 -251700138 + MER21B LTR ERV1 94 579 -284 1997 122 39 0 chr1 30493526 30493812 -251699852 + AluJb SINE Alu 1 297 -15 887 75 0 0 chr1 30493812 30493919 -251699745 + U6 snRNA snRNA 1 107 0 2613 142 172 75 chr1 30493919 30493949 -251699715 + MER21B LTR ERV1 579 605 -258 2449 81 3 3 chr1 30493949 30494258 -251699406 + AluSp SINE Alu 1 309 -4 2613 142 172 75 chr1 30494258 30494367 -251699297 + MER21B LTR ERV1 605 840 -23 2341 64 0 0 chr1 30494371 30494681 -251698983 + AluY SINE Alu 1 310 0 1760 186 0 3 chr1 30495226 30495516 -251698148 + AluJo SINE Alu 1 289 -23 2275 109 6 10 chr1 30495546 30495859 -251697805 + AluSx SINE Alu 1 312 0 2175 318 86 13 chr1 30495886 30496220 -251697444 + ERVL LTR ERVL 3494 3802 -1962 207 0 0 0 chr1 30496220 30496243 -251697421 + (GA)n Simple_repeat Simple_repeat 2 24 0 2175 318 86 13 chr1 30496243 30496976 -251696688 + ERVL LTR ERVL 3802 4639 -1125 302 297 47 47 chr1 30496980 30497128 -251696536 + MIR SINE MIR 115 262 0 228 241 103 17 chr1 30497808 30497866 -251695798 + MIR SINE MIR 85 147 -61 2445 69 0 20 chr1 30498000 30498306 -251695358 + AluY SINE Alu 1 300 -11 652 239 39 33 chr1 30498322 30498502 -251695162 + MIR SINE MIR 37 217 -45 2669 175 55 57 chr1 30498704 30499099 -251694565 + MER21B LTR ERV1 1 395 -468 1827 180 0 0 chr1 30499099 30499394 -251694270 + AluJb SINE Alu 1 295 -17 2669 175 55 57 chr1 30499394 30499722 -251693942 + MER21B LTR ERV1 395 805 -58 441 225 16 93 chr1 30499861 30500043 -251693621 - MIR SINE MIR -10 252 85 455 382 0 0 chr1 30500440 30500724 -251692940 + G-rich Low_complexity Low_complexity 1 284 0 307 261 0 0 chr1 30501463 30501528 -251692136 - MIR SINE MIR -108 154 90 2302 95 0 13 chr1 30501558 30501863 -251691801 - AluSx SINE Alu -11 301 1 277 344 10 0 chr1 30501863 30501959 -251691705 - MIR SINE MIR -150 112 16 1552 170 18 43 chr1 30502242 30502524 -251691140 - AluJo SINE Alu -31 281 7 222 184 41 0 chr1 30503057 30503106 -251690558 + MIR3 SINE MIR 106 156 -52 1009 181 23 6 chr1 30503354 30503525 -251690139 - FAM SINE Alu 0 175 2 311 298 93 19 chr1 30503649 30503854 -251689810 + L2 LINE L2 2830 3049 -223 204 244 0 0 chr1 30504180 30504221 -251689443 + MIR SINE MIR 222 262 0 2018 137 7 7 chr1 30504850 30505143 -251688521 - AluSx SINE Alu -19 293 1 2269 112 0 7 chr1 30505267 30505572 -251688092 - AluSx SINE Alu -9 303 1 662 257 6 17 chr1 30505648 30505827 -251687837 - MARNA DNA Mariner -186 400 224 1619 63 0 0 chr1 30505836 30506025 -251687639 + AluSg/x SINE Alu 112 300 -12 1142 132 25 0 chr1 30507424 30507583 -251686081 - AluJb SINE Alu -15 297 135 2231 111 0 26 chr1 30507584 30507891 -251685773 - AluSg1 SINE Alu -10 299 1 611 166 17 9 chr1 30507892 30507997 -251685667 - L1P5 LINE L1 -367 5784 5681 2437 91 0 7 chr1 30507997 30508305 -251685359 - AluSc SINE Alu -3 306 1 2158 132 0 3 chr1 30508307 30508603 -251685061 - AluSx SINE Alu -17 295 1 611 166 17 9 chr1 30508603 30508626 -251685038 - L1P5 LINE L1 -470 5681 5653 1226 157 29 9 chr1 30508628 30508838 -251684826 + MER58A DNA MER1_type 11 224 0 2250 113 7 7 chr1 30508859 30509161 -251684503 + AluSg SINE Alu 1 302 -8 262 157 39 0 chr1 30509222 30509273 -251684391 + L1M4 LINE L1 4963 5015 -1131 315 234 139 3 chr1 30509557 30509682 -251683982 + MIR SINE MIR 46 192 -69 262 279 82 0 chr1 30509746 30509807 -251683857 + MIR SINE MIR 29 94 -114 23 0 0 0 chr1 30509835 30509858 -251683806 + AT_rich Low_complexity Low_complexity 1 23 0 1222 156 0 70 chr1 30510385 30510629 -251683035 + AluSg/x SINE Alu 85 311 -1 2176 108 0 0 chr1 30510635 30510934 -251682730 + AluSx SINE Alu 3 301 0 1196 273 68 47 chr1 30510935 30511488 -251682176 + L1MC4a LINE L1 4753 5293 -853 2627 61 0 6 chr1 30511488 30511801 -251681863 + AluSp SINE Alu 1 311 -2 1196 273 68 47 chr1 30511801 30511924 -251681740 + L1MC4a LINE L1 5293 5012 -1134 1880 205 28 15 chr1 30511924 30512315 -251681349 + MSTD LTR MaLR 1 396 0 1196 273 68 47 chr1 30512315 30512712 -251680952 + L1MC4a LINE L1 5011 5398 -748 2314 110 3 0 chr1 30512734 30513034 -251680630 + AluSp SINE Alu 1 301 -12 1806 98 53 56 chr1 30513047 30513374 -251680290 + AluSx SINE Alu 1 326 0 773 213 234 60 chr1 30513375 30513893 -251679771 + L2 LINE L2 2718 3313 0 271 229 12 48 chr1 30513876 30513959 -251679705 + MIR SINE MIR 172 251 -11 * 187 333 67 17 chr1 30514292 30514412 -251679252 - L3b LINE CR1 -189 1394 1269 513 270 92 17 chr1 30514751 30514925 -251678739 + MIR SINE MIR 76 262 0 1746 196 0 0 chr1 30515616 30515897 -251677767 + AluJo SINE Alu 15 295 -17 395 254 69 47 chr1 30516046 30516224 -251677440 + MIR3 SINE MIR 11 184 -36 271 257 158 10 chr1 30516545 30516646 -251677018 + MIR SINE MIR 35 150 -112 2230 96 0 14 chr1 30516647 30516938 -251676726 + AluSx SINE Alu 1 287 -25 414 0 0 0 chr1 30516941 30516987 -251676677 + (TG)n Simple_repeat Simple_repeat 2 47 0 550 280 89 0 chr1 30517251 30517419 -251676245 - MIR SINE MIR -50 212 30 477 249 185 21 chr1 30517448 30517637 -251676027 + MIR SINE MIR 37 256 -6 403 248 109 0 chr1 30519918 30520019 -251673645 + MIR SINE MIR 48 159 -103 329 133 17 50 chr1 30520075 30520135 -251673529 - L2 LINE L2 0 3313 3256 435 311 113 0 chr1 30520268 30520445 -251673219 - MIR SINE MIR -15 247 51 346 268 79 8 chr1 30520642 30520761 -251672903 - MIR3 SINE MIR -38 170 44 313 316 32 51 chr1 30521014 30521172 -251672492 - L3 LINE CR1 -141 1436 1282 219 331 81 8 chr1 30521315 30521439 -251672225 - L2 LINE L2 -20 3293 3161 236 274 0 27 chr1 30521469 30521542 -251672122 - L1MC4 LINE L1 -372 7670 7600 2209 79 18 7 chr1 30521572 30521880 -251671784 - AluSg SINE Alu 0 311 1 2808 22 0 6 chr1 30522037 30522349 -251671315 - AluY SINE Alu -1 310 1 1002 213 22 70 chr1 30522400 30522564 -251671100 + MLT1A2 LTR MaLR 5 152 -222 1743 166 21 10 chr1 30522564 30522853 -251670811 + AluJb SINE Alu 1 292 -20 1002 213 22 70 chr1 30522853 30522961 -251670703 + MLT1A2 LTR MaLR 152 264 -110 2095 148 0 3 chr1 30522977 30523280 -251670384 - AluSx SINE Alu -2 310 9 1990 135 3 39 chr1 30523348 30523659 -251670005 + AluSx SINE Alu 1 300 -12 225 204 19 0 chr1 30523665 30523719 -251669945 - L1MC4 LINE L1 -868 7174 7120 541 212 0 17 chr1 30523733 30523851 -251669813 - MLT1B LTR MaLR -68 322 207 2247 127 0 3 chr1 30523861 30524168 -251669496 - AluSq SINE Alu -5 308 3 2388 96 0 3 chr1 30524168 30524470 -251669194 - AluSq SINE Alu -12 301 1 238 300 100 29 chr1 30524574 30524714 -251668950 - L2 LINE L2 -1605 1709 1560 292 293 94 26 chr1 30524714 30524905 -251668759 - L2 LINE L2 -1943 1371 1168 1127 76 0 0 chr1 30524916 30525048 -251668616 + AluSp SINE Alu 1 132 -181 1547 110 4 22 chr1 30525058 30525286 -251668378 + AluSp SINE Alu 85 308 -5 279 301 74 59 chr1 30525293 30525496 -251668168 - L2 LINE L2 -2179 1135 930 863 149 0 144 chr1 30525535 30525730 -251667934 - FRAM SINE Alu -10 166 1 243 0 0 0 chr1 30525807 30525834 -251667830 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 779 240 109 13 chr1 30525839 30525980 -251667684 - MIR SINE MIR -10 252 79 2218 108 24 0 chr1 30525980 30526276 -251667388 + AluSx SINE Alu 1 303 -9 779 240 109 13 chr1 30526276 30526363 -251667301 - MIR SINE MIR -183 79 2 481 317 68 78 chr1 30526469 30526962 -251666702 - L2 LINE L2 -128 3185 2696 2142 99 3 0 chr1 30526971 30527263 -251666401 - AluSx SINE Alu -19 293 1 287 316 0 22 chr1 30527282 30527421 -251666243 + (TTCA)n Simple_repeat Simple_repeat 1 136 0 207 357 132 29 chr1 30527430 30527710 -251665954 - L2 LINE L2 -19 3253 2945 186 43 0 0 chr1 30528103 30528126 -251665538 + (TC)n Simple_repeat Simple_repeat 1 23 0 * 225 0 0 0 chr1 30528125 30528150 -251665514 + (CA)n Simple_repeat Simple_repeat 1 25 0 2506 58 3 0 chr1 30528441 30528751 -251664913 - AluY SINE Alu 0 311 1 1680 174 6 19 chr1 30528800 30529111 -251664553 - AluJo SINE Alu -5 307 1 185 293 13 27 chr1 30529298 30529373 -251664291 + MIR SINE MIR 52 125 -83 21 36 0 0 chr1 30530545 30530573 -251663091 + GC_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr1 30530677 30530706 -251662958 + GC_rich Low_complexity Low_complexity 1 29 0 407 262 10 0 chr1 30530848 30530951 -251662713 + MIR SINE MIR 40 143 -65 853 149 117 70 chr1 30531089 30531303 -251662361 + AluJo SINE Alu 81 304 -8 2208 115 0 3 chr1 30532431 30532743 -251660921 + AluSx SINE Alu 1 311 -1 499 289 98 15 chr1 30533201 30533405 -251660259 - MIR SINE MIR -10 252 32 227 309 164 40 chr1 30533669 30533821 -251659843 + MIR3 SINE MIR 16 186 -22 218 338 13 0 chr1 30533899 30533976 -251659688 - MIR SINE MIR -125 137 60 1629 99 36 0 chr1 30534395 30534516 -251659148 + MER30 DNA MER1_type 1 135 -95 2256 89 0 3 chr1 30534516 30534818 -251658846 + AluY SINE Alu 1 301 -10 1629 99 36 0 chr1 30534818 30534918 -251658746 + MER30 DNA MER1_type 135 230 0 591 335 69 0 chr1 30534940 30535185 -251658479 + MIR SINE MIR 1 262 0 334 316 79 55 chr1 30535322 30535478 -251658186 - L1M4c LINE L1 -1305 1438 1287 814 165 154 11 chr1 30535478 30535634 -251658030 - MER63A DNA MER1_type -1478 210 23 222 37 0 0 chr1 30535634 30535661 -251658003 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 814 165 154 11 chr1 30535661 30535686 -251657978 - MER63A DNA MER1_type -1665 23 3 334 316 79 55 chr1 30535686 30535845 -251657819 - L1M4c LINE L1 -1456 1287 939 384 59 0 0 chr1 30536301 30536352 -251657312 + (TG)n Simple_repeat Simple_repeat 2 52 0 896 159 96 0 chr1 30536512 30536669 -251656995 - AluJo SINE Alu -21 291 120 323 119 34 0 chr1 30536677 30536736 -251656928 - AluJo SINE Alu 0 302 242 993 181 6 0 chr1 30536736 30536896 -251656768 - AluJo SINE Alu -151 161 1 622 162 39 78 chr1 30536897 30536960 -251656704 + MIR SINE MIR 88 152 -110 2140 119 0 0 chr1 30536960 30537255 -251656409 + AluSq SINE Alu 1 295 -18 622 162 39 78 chr1 30537255 30537370 -251656294 + MIR SINE MIR 152 259 -3 279 0 0 0 chr1 30537390 30537421 -251656243 + (TG)n Simple_repeat Simple_repeat 2 32 0 1812 132 13 42 chr1 30537673 30537984 -251655680 - AluJo SINE Alu -10 302 1 2174 96 0 0 chr1 30538900 30539210 -251654454 - AluSg SINE Alu 0 310 1 293 286 0 0 chr1 30539992 30540083 -251653581 + (CA)n Simple_repeat Simple_repeat 1 91 0 438 286 0 0 chr1 30540116 30540374 -251653290 + (CA)n Simple_repeat Simple_repeat 1 258 0 1297 149 9 18 chr1 30540415 30540637 -251653027 + AluJo SINE Alu 85 304 -8 2379 89 0 6 chr1 30542063 30542377 -251651287 + AluSx SINE Alu 1 312 0 226 292 69 90 chr1 30542506 30542560 -251651104 - L2 LINE L2 -459 2855 2801 1768 125 86 4 chr1 30542560 30542839 -251650825 - AluSx SINE Alu -10 302 1 226 292 69 90 chr1 30542839 30542928 -251650736 - L2 LINE L2 -513 2801 2715 618 290 145 0 chr1 30543471 30543671 -251649993 - MIR SINE MIR 0 262 34 1333 156 152 30 chr1 30543797 30544126 -251649538 - AluJb SINE Alu 0 362 1 247 212 8 121 chr1 30544144 30544244 -251649420 - MIR SINE MIR -12 250 140 1784 181 0 10 chr1 30544244 30544537 -251649127 - AluJo SINE Alu -22 290 1 2085 127 0 0 chr1 30544543 30544834 -251648830 - AluSx SINE Alu -21 291 1 247 212 8 121 chr1 30544834 30544922 -251648742 - MIR SINE MIR -127 135 82 286 313 117 17 chr1 30544926 30545156 -251648508 - L2 LINE L2 -755 2559 2307 246 284 0 14 chr1 30545226 30545300 -251648364 + MER91A DNA MER1_type 123 195 -1 207 294 174 66 chr1 30545315 30545378 -251648286 - L2 LINE L2 -1060 2254 2199 2186 103 0 0 chr1 30545378 30545668 -251647996 + AluSx SINE Alu 1 290 -22 207 294 174 66 chr1 30545668 30546288 -251647376 - L2 LINE L2 -1115 2199 1497 296 298 45 23 chr1 30546381 30546571 -251647093 + MIR SINE MIR 14 260 -2 313 336 100 22 chr1 30546663 30546892 -251646772 - L3 LINE CR1 -419 1158 912 203 301 129 33 chr1 30546942 30547214 -251646450 - L2 LINE L2 -1128 2186 1889 * 369 229 178 0 chr1 30547149 30547267 -251646397 + MIR3 SINE MIR 7 145 -63 309 292 101 0 chr1 30547368 30547508 -251646156 - MIR SINE MIR -8 254 99 304 257 105 40 chr1 30548017 30548169 -251645495 - MIR3 SINE MIR -29 179 18 613 311 89 22 chr1 30548318 30548678 -251644986 - L2 LINE L2 -543 2771 2388 209 346 56 56 chr1 30548691 30548905 -251644759 + L2 LINE L2 2951 3164 -108 196 291 185 20 chr1 30550096 30550247 -251643417 + MIR3 SINE MIR 33 208 0 493 220 10 0 chr1 30550574 30550674 -251642990 + MIR SINE MIR 48 148 -114 225 225 0 0 chr1 30550690 30550730 -251642934 - L2 LINE L2 -10 3262 3223 984 243 72 0 chr1 30550755 30550990 -251642674 + MIR SINE MIR 11 262 0 2224 93 27 0 chr1 30551146 30551446 -251642218 - AluSx SINE Alu -2 310 3 279 247 32 32 chr1 30552049 30552142 -251641522 - MIR3 SINE MIR -4 204 112 264 259 53 107 chr1 30553329 30553460 -251640204 - L2 LINE L2 -7 3265 3142 440 275 137 17 chr1 30553469 30553702 -251639962 - MIR SINE MIR 0 262 2 366 23 0 0 chr1 30553734 30553777 -251639887 + (TG)n Simple_repeat Simple_repeat 1 43 0 603 201 22 22 chr1 30554109 30554248 -251639416 + MIR SINE MIR 20 158 -104 616 300 109 0 chr1 30554266 30554486 -251639178 - MIR SINE MIR -7 255 12 562 256 69 6 chr1 30555027 30555187 -251638477 - MIR SINE MIR -52 210 41 247 279 99 23 chr1 30555479 30555651 -251638013 - L2 LINE L2 -271 3001 2817 581 118 16 64 chr1 30555840 30556027 -251637637 + (CA)n Simple_repeat Simple_repeat 2 179 0 347 324 92 56 chr1 30556167 30556618 -251637046 - L2 LINE L2 -82 3190 2714 2214 88 7 0 chr1 30556618 30556913 -251636751 - AluSx SINE Alu -15 297 1 347 324 92 56 chr1 30556913 30556981 -251636683 - L2 LINE L2 -558 2714 2650 195 299 117 0 chr1 30557657 30557734 -251635930 + MIR SINE MIR 59 144 -118 273 286 267 6 chr1 30557938 30558099 -251635565 - MIR SINE MIR -25 237 35 326 271 160 42 chr1 30559687 30559831 -251633833 + MIR SINE MIR 6 166 -96 33 43 0 0 chr1 30560598 30560645 -251633019 + GC_rich Low_complexity Low_complexity 1 47 0 261 226 0 0 chr1 30560746 30560851 -251632813 + GA-rich Low_complexity Low_complexity 1 105 0 215 81 54 0 chr1 30560905 30560942 -251632722 + GA-rich Low_complexity Low_complexity 2 40 0 278 263 10 10 chr1 30561009 30561108 -251632556 + GA-rich Low_complexity Low_complexity 1 99 0 21 36 0 0 chr1 30561246 30561274 -251632390 + GC_rich Low_complexity Low_complexity 1 28 0 266 85 0 21 chr1 30561676 30561723 -251631941 + (AGGGGG)n Simple_repeat Simple_repeat 3 48 0 21 95 0 0 chr1 30561739 30561802 -251631862 + GC_rich Low_complexity Low_complexity 1 63 0 200 291 13 13 chr1 30562533 30562612 -251631052 + G-rich Low_complexity Low_complexity 4 82 0 273 385 30 24 chr1 30565179 30565348 -251628316 - MIR3 SINE MIR -3 205 36 397 299 19 0 chr1 30566823 30567013 -251626651 + (CAGA)n Simple_repeat Simple_repeat 1 193 0 180 277 0 0 chr1 30567015 30567109 -251626555 + GA-rich Low_complexity Low_complexity 1 94 0 180 0 0 0 chr1 30567472 30567492 -251626172 + (TC)n Simple_repeat Simple_repeat 1 20 0 * 213 119 0 0 chr1 30567491 30567533 -251626131 + (CA)n Simple_repeat Simple_repeat 1 42 0 268 198 9 72 chr1 30567991 30568102 -251625562 + (TG)n Simple_repeat Simple_repeat 2 105 0 231 61 0 0 chr1 30569385 30569418 -251624246 + (CA)n Simple_repeat Simple_repeat 2 34 0 248 257 54 14 chr1 30572135 30572209 -251621455 - MIR3 SINE MIR -54 154 78 777 292 69 4 chr1 30572954 30573187 -251620477 - MIR SINE MIR -1 261 14 398 238 68 54 chr1 30573391 30573538 -251620126 - MIR3 SINE MIR -24 184 36 205 308 0 17 chr1 30575474 30575591 -251618073 + (CAGAGA)n Simple_repeat Simple_repeat 6 120 0 369 277 116 0 chr1 30576437 30576549 -251617115 - L2 LINE L2 0 3313 3189 235 218 74 23 chr1 30576992 30577080 -251616584 + MIR SINE MIR 59 161 -47 221 269 0 0 chr1 30577158 30577210 -251616454 - L2 LINE L2 -15 3257 3206 319 350 0 0 chr1 30577614 30577716 -251615948 + MIR3 SINE MIR 54 156 -52 519 253 96 0 chr1 30578912 30579058 -251614606 - MIR SINE MIR -69 193 34 736 299 63 0 chr1 30579355 30579576 -251614088 - MIR SINE MIR -5 257 23 1251 149 47 9 chr1 30579586 30579800 -251613864 - AluJb SINE Alu -1 311 90 1455 73 0 0 chr1 30579801 30579978 -251613686 - AluSq SINE Alu -136 177 1 532 259 54 18 chr1 30580398 30580564 -251613100 + MIR SINE MIR 81 252 -10 583 239 144 22 chr1 30580638 30580818 -251612846 + MIR SINE MIR 3 204 -58 239 294 15 0 chr1 30580809 30580877 -251612787 - L2 LINE L2 0 3313 3245 * 375 251 75 22 chr1 30581010 30581214 -251612450 - MIR SINE MIR 0 262 5 181 291 150 36 chr1 30581417 30581637 -251612027 - L2 LINE L2 -183 3089 2845 1562 111 172 8 chr1 30581701 30581962 -251611702 + AluSg SINE Alu 1 304 -6 256 325 264 15 chr1 30581981 30582178 -251611486 + MIR SINE MIR 5 250 -12 * 691 276 36 23 chr1 30582171 30582392 -251611272 - L2 LINE L2 0 3313 3090 218 343 29 20 chr1 30582480 30582582 -251611082 - MIR SINE MIR -50 212 110 231 390 44 26 chr1 30583054 30583282 -251610382 - L2 LINE L2 -505 2809 2578 32 0 0 0 chr1 30583510 30583542 -251610122 + AT_rich Low_complexity Low_complexity 1 32 0 1110 130 125 0 chr1 30583548 30583732 -251609932 + AluJo SINE Alu 87 293 -19 2283 86 3 0 chr1 30583734 30584025 -251609639 + AluSx SINE Alu 1 292 -20 539 271 182 19 chr1 30584115 30584329 -251609335 - MIR SINE MIR 0 262 14 770 214 66 16 chr1 30585037 30585219 -251608445 - MER58A DNA MER1_type -33 191 1 1153 176 48 5 chr1 30585616 30585826 -251607838 + AluJo SINE Alu 84 302 -10 1122 155 57 67 chr1 30585855 30585875 -251607789 - MER33 DNA MER1_type -2272 313 294 2199 98 0 3 chr1 30585875 30586171 -251607493 + AluSg SINE Alu 3 297 -13 1122 155 57 67 chr1 30586171 30586259 -251607405 - MER33 DNA MER1_type -2291 294 207 2211 106 3 0 chr1 30586259 30586561 -251607103 - AluSx SINE Alu -9 303 1 1122 155 57 67 chr1 30586561 30586767 -251606897 - MER33 DNA MER1_type -2378 207 1 462 264 168 6 chr1 30588240 30588407 -251605257 + MIR SINE MIR 13 206 -56 231 222 56 67 chr1 30588515 30588605 -251605059 - MIR3 SINE MIR -41 167 79 188 211 75 6 chr1 30588622 30588681 -251604983 - MIR3 SINE MIR -51 157 117 24 77 0 0 chr1 30589099 30589151 -251604513 + GC_rich Low_complexity Low_complexity 1 52 0 26 30 0 0 chr1 30589183 30589216 -251604448 + GC_rich Low_complexity Low_complexity 1 33 0 438 272 62 12 chr1 30590322 30590484 -251603180 + MIR SINE MIR 68 237 -25 373 242 11 11 chr1 30590957 30591052 -251602612 + MIR SINE MIR 70 164 -98 493 252 0 24 chr1 30591526 30591653 -251602011 + MIR3 SINE MIR 81 204 -4 234 277 299 7 chr1 30594371 30594508 -251599156 + MIR3 SINE MIR 16 192 -16 346 270 79 0 chr1 30595472 30595561 -251598103 + MIR SINE MIR 90 185 -77 226 127 164 0 chr1 30595613 30595668 -251597996 - MIR SINE MIR -168 94 31 27 0 0 0 chr1 30596081 30596108 -251597556 + GC_rich Low_complexity Low_complexity 1 27 0 22 56 0 0 chr1 30596139 30596175 -251597489 + GC_rich Low_complexity Low_complexity 1 36 0 25 31 0 0 chr1 30596257 30596289 -251597375 + GC_rich Low_complexity Low_complexity 1 32 0 188 111 28 0 chr1 30598168 30598204 -251595460 + CT-rich Low_complexity Low_complexity 2 38 0 439 329 4 7 chr1 30598396 30598619 -251595045 + CT-rich Low_complexity Low_complexity 1 222 0 314 301 47 76 chr1 30599360 30599596 -251594068 - L1M4b LINE L1 -6188 671 443 258 227 202 25 chr1 30599884 30600003 -251593661 + MIR3 SINE MIR 46 185 -23 234 311 85 9 chr1 30600241 30600347 -251593317 + MIR SINE MIR 19 132 -76 203 240 60 0 chr1 30600397 30600447 -251593217 - MIR SINE MIR -92 170 118 289 333 56 0 chr1 30600584 30600692 -251592972 - MIR SINE MIR -91 117 10 216 0 0 0 chr1 30601500 30601524 -251592140 + (TG)n Simple_repeat Simple_repeat 2 25 0 183 80 0 0 chr1 30601548 30601573 -251592091 + (TG)n Simple_repeat Simple_repeat 2 26 0 192 179 0 0 chr1 30601599 30601638 -251592026 + (TG)n Simple_repeat Simple_repeat 2 40 0 183 80 0 0 chr1 30601662 30601687 -251591977 + (TG)n Simple_repeat Simple_repeat 2 26 0 219 167 0 0 chr1 30601713 30601755 -251591909 + (CGTG)n Simple_repeat Simple_repeat 1 42 0 372 234 0 0 chr1 30603052 30603193 -251590471 + CT-rich Low_complexity Low_complexity 2 142 0 209 159 23 0 chr1 30603889 30603933 -251589731 + GA-rich Low_complexity Low_complexity 2 46 0 232 205 0 72 chr1 30603939 30604022 -251589642 + (CA)n Simple_repeat Simple_repeat 1 77 0 216 0 0 0 chr1 30604644 30604668 -251588996 + (CA)n Simple_repeat Simple_repeat 1 24 0 424 274 104 7 chr1 30605296 30605431 -251588233 - MIR SINE MIR -110 152 5 1871 122 0 31 chr1 30605518 30605804 -251587860 + AluJo SINE Alu 6 282 -30 212 283 17 0 chr1 30606311 30606371 -251587293 - MIR3 SINE MIR -47 161 101 186 265 0 0 chr1 30608176 30608225 -251585439 + MIR SINE MIR 78 126 -136 372 181 96 14 chr1 30609495 30609582 -251584082 + MIR3 SINE MIR 65 161 -47 267 330 9 27 chr1 30609599 30609711 -251583953 + MER5A DNA MER1_type 45 154 -35 495 246 66 36 chr1 30609800 30610017 -251583647 + MIR SINE MIR 8 222 -40 240 167 21 21 chr1 30610309 30610357 -251583307 + MIR SINE MIR 35 82 -180 470 367 68 11 chr1 30610364 30610628 -251583036 - L2 LINE L2 -6 3307 3029 306 262 28 121 chr1 30610762 30610780 -251582884 - L2 LINE L2 -1 3271 3253 1963 138 3 13 chr1 30610780 30611085 -251582579 - AluJo SINE Alu -10 302 1 306 262 28 121 chr1 30611085 30611207 -251582457 - L2 LINE L2 -19 3253 3144 352 318 23 8 chr1 30611213 30611342 -251582322 + MIR SINE MIR 132 262 0 632 280 22 11 chr1 30611476 30611658 -251582006 + MIR SINE MIR 65 248 -14 2059 125 7 0 chr1 30612172 30612468 -251581196 + AluSx SINE Alu 1 298 -14 22 0 0 0 chr1 30612712 30612734 -251580930 + GC_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr1 30612836 30612865 -251580799 + GC_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr1 30616006 30616027 -251577637 + (TCC)n Simple_repeat Simple_repeat 3 23 0 460 287 42 30 chr1 30618918 30619085 -251574579 + MIR3 SINE MIR 18 186 -22 435 313 223 22 chr1 30619532 30620109 -251573555 - L2 LINE L2 0 3272 2572 205 315 115 42 chr1 30620377 30620542 -251573122 - L2 LINE L2 -25 3288 3112 253 304 122 20 chr1 30620679 30620827 -251572837 - MIR SINE MIR -79 183 21 233 348 36 43 chr1 30620765 30620903 -251572761 + MIR3 SINE MIR 32 168 -40 * 2132 107 7 7 chr1 30620906 30621206 -251572458 - AluSg SINE Alu -10 300 1 294 339 27 0 chr1 30621252 30621364 -251572300 - L2 LINE L2 -226 3046 2932 336 311 198 14 chr1 30622134 30622346 -251571318 + MIR SINE MIR 8 258 -4 296 289 48 19 chr1 30622807 30622911 -251570753 - L2 LINE L2 -13 3259 3153 2271 93 0 3 chr1 30622940 30623240 -251570424 + AluSq SINE Alu 2 300 -13 2248 116 0 0 chr1 30623250 30623560 -251570104 + AluSx SINE Alu 1 310 -2 225 0 0 0 chr1 30623842 30623867 -251569797 + (T)n Simple_repeat Simple_repeat 1 25 0 268 258 117 39 chr1 30624175 30624303 -251569361 + L2 LINE L2 2933 3070 -202 198 363 73 50 chr1 30624619 30624798 -251568866 - MIR3 SINE MIR -15 193 11 195 100 0 0 chr1 30624875 30624905 -251568759 + (GA)n Simple_repeat Simple_repeat 1 30 0 203 268 56 14 chr1 30624916 30624987 -251568677 - MIR3 SINE MIR -52 156 83 2361 87 0 0 chr1 30625125 30625423 -251568241 + AluSg SINE Alu 1 298 -12 1981 132 13 10 chr1 30625430 30625741 -251567923 + AluJo SINE Alu 1 312 0 329 240 32 96 chr1 30625989 30626062 -251567602 - MIR3 SINE MIR -18 190 127 1866 172 0 0 chr1 30626062 30626365 -251567299 + AluJb SINE Alu 9 311 -1 329 240 32 96 chr1 30626365 30626416 -251567248 - MIR3 SINE MIR -81 127 74 2178 102 6 10 chr1 30626436 30626749 -251566915 - AluSx SINE Alu 0 312 1 404 312 30 55 chr1 30627435 30627634 -251566030 + L2 LINE L2 3042 3235 -37 705 279 92 18 chr1 30629451 30629680 -251563984 - MIR SINE MIR 0 262 17 198 154 26 0 chr1 30629755 30629794 -251563870 - MIR SINE MIR -121 141 102 217 213 0 21 chr1 30630186 30630233 -251563431 + GA-rich Low_complexity Low_complexity 2 47 0 291 130 0 0 chr1 30630566 30630620 -251563044 + (A)n Simple_repeat Simple_repeat 1 54 0 219 258 144 23 chr1 30631968 30632100 -251561564 - L2 LINE L2 -210 3062 2915 273 239 87 61 chr1 30633105 30633246 -251560418 - MIR SINE MIR -59 149 45 838 163 0 0 chr1 30633253 30633421 -251560243 - FLAM_C SINE Alu 0 168 1 2238 69 0 7 chr1 30633448 30633738 -251559926 + AluY SINE Alu 2 289 -22 2133 88 33 16 chr1 30633765 30634070 -251559594 - AluSg SINE Alu 0 310 1 660 224 40 88 chr1 30634165 30634415 -251559249 - MIR SINE MIR -2 260 23 1088 135 6 0 chr1 30634444 30634614 -251559050 + AluSg/x SINE Alu 140 310 -2 707 251 54 0 chr1 30634687 30634854 -251558810 - MER5B DNA MER1_type -1 177 2 357 277 109 8 chr1 30635005 30635124 -251558540 - L2 LINE L2 -4 3309 3179 192 77 0 0 chr1 30635607 30635633 -251558031 + (GGGA)n Simple_repeat Simple_repeat 1 26 0 224 178 0 0 chr1 30686913 30686958 -251506706 + MIR SINE MIR 105 149 -113 252 0 0 0 chr1 30687798 30687826 -251505838 + (CA)n Simple_repeat Simple_repeat 1 28 0 201 333 7 0 chr1 30688007 30688145 -251505519 + (CA)n Simple_repeat Simple_repeat 2 140 0 1460 77 0 11 chr1 30688281 30688463 -251505201 + AluY SINE Alu 1 180 -131 474 231 29 81 chr1 30689603 30689776 -251503888 - L2 LINE L2 -2 3311 3148 2034 134 3 0 chr1 30689798 30690088 -251503576 + AluSq SINE Alu 1 291 -22 315 0 0 0 chr1 30690330 30690365 -251503299 + (CA)n Simple_repeat Simple_repeat 2 36 0 525 311 8 66 chr1 30690638 30690895 -251502769 - MLT1H LTR MaLR -285 264 23 312 254 0 0 chr1 30690914 30690985 -251502679 - MIR SINE MIR -108 154 84 192 349 40 16 chr1 30691687 30691813 -251501851 + L2 LINE L2 2848 2976 -337 784 175 12 19 chr1 30692115 30692477 -251501187 + GA-rich Low_complexity Low_complexity 1 359 0 1758 119 0 0 chr1 30692624 30692860 -251500804 - AluSq SINE Alu -76 237 2 21 0 0 0 chr1 30692927 30692948 -251500716 + AT_rich Low_complexity Low_complexity 1 21 0 2055 128 7 10 chr1 30692948 30693246 -251500418 - AluSx SINE Alu -14 298 2 2214 112 7 10 chr1 30693331 30693636 -251500028 - AluSx SINE Alu -8 304 1 204 40 0 0 chr1 30693636 30693661 -251500003 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 2192 96 0 0 chr1 30693666 30693938 -251499726 - AluSc SINE Alu -37 272 1 1320 165 143 0 chr1 30694120 30694386 -251499278 + MER44D DNA MER2_type 36 609 0 412 263 167 44 chr1 30694526 30694819 -251498845 + L2 LINE L2 2644 2972 -342 186 324 141 0 chr1 30694975 30695046 -251498618 + L2 LINE L2 3156 3236 -36 949 136 0 0 chr1 30695109 30695241 -251498423 - FLAM_C SINE Alu 0 133 2 236 130 22 0 chr1 30695320 30695366 -251498298 + GA-rich Low_complexity Low_complexity 3 49 0 2374 84 7 0 chr1 30695372 30695668 -251497996 + AluSp SINE Alu 1 298 -15 2367 107 0 0 chr1 30696008 30696308 -251497356 - AluSx SINE Alu -12 300 1 2342 94 0 3 chr1 30696557 30696854 -251496810 - AluSx SINE Alu -16 296 1 199 336 135 0 chr1 30696857 30696961 -251496703 - L2 LINE L2 -13 3259 3142 2000 147 31 0 chr1 30697309 30697601 -251496063 - AluSx SINE Alu -11 301 1 1890 140 0 14 chr1 30699371 30699656 -251494008 - AluJb SINE Alu -13 299 19 307 316 132 13 chr1 30700774 30701002 -251492662 + MIR SINE MIR 2 256 -6 361 228 72 104 chr1 30701693 30701789 -251491875 - MIR SINE MIR 0 262 165 1701 197 3 0 chr1 30701789 30702083 -251491581 + AluJo SINE Alu 1 295 -17 2145 104 10 7 chr1 30702090 30702388 -251491276 + AluSq SINE Alu 1 299 -14 361 228 72 104 chr1 30702388 30702476 -251491188 - MIR SINE MIR -103 159 76 2321 97 3 0 chr1 30702539 30702837 -251490827 - AluSq SINE Alu -14 299 1 671 216 0 8 chr1 30702844 30702978 -251490686 - FLAM_A SINE Alu 0 133 1 1615 184 0 41 chr1 30702984 30703153 -251490511 - AluJb SINE Alu 0 302 149 2205 102 34 0 chr1 30703153 30703446 -251490218 - AluSg SINE Alu -7 303 1 1615 184 0 41 chr1 30703446 30703590 -251490074 - AluJb SINE Alu -153 149 1 2219 97 3 22 chr1 30703592 30703903 -251489761 - AluSg SINE Alu -5 305 1 284 167 33 0 chr1 30703914 30703974 -251489690 - L1MA3 LINE L1 0 6305 6244 293 119 0 0 chr1 30703977 30704019 -251489645 - FLAM SINE Alu -8 125 84 1663 182 3 33 chr1 30704046 30704212 -251489452 - AluJo SINE Alu -9 293 138 2323 98 23 0 chr1 30704212 30704390 -251489274 - AluSx SINE Alu 0 312 123 2693 36 0 3 chr1 30704390 30704696 -251488968 - AluY SINE Alu -6 305 1 2323 98 23 0 chr1 30704696 30704822 -251488842 - AluSx SINE Alu -189 123 1 1663 182 3 33 chr1 30704822 30704957 -251488707 - AluJo SINE Alu -164 138 1 631 132 108 78 chr1 30704958 30705000 -251488664 - MER7A DNA MER2_type -2906 132 93 1979 149 0 3 chr1 30705000 30705296 -251488368 + AluSq SINE Alu 1 295 -18 631 132 108 78 chr1 30705296 30705382 -251488282 - MER7A DNA MER2_type -2945 93 2 724 188 0 0 chr1 30705457 30705574 -251488090 + FAM SINE Alu 46 162 -23 281 137 18 201 chr1 30705584 30705633 -251488031 + HsTC2 DNA Tc2 3 59 -1839 1857 163 10 0 chr1 30705633 30705922 -251487742 - AluJb SINE Alu -16 296 5 281 137 18 201 chr1 30705922 30705994 -251487670 + HsTC2 DNA Tc2 59 1898 0 1852 171 3 7 chr1 30706140 30706450 -251487214 - AluJb SINE Alu -3 309 1 302 121 0 35 chr1 30706809 30706867 -251486797 + (CTA)n Simple_repeat Simple_repeat 2 57 0 418 242 112 39 chr1 30706877 30707098 -251486566 - MIR SINE MIR -26 236 4 1760 158 19 53 chr1 30709682 30710004 -251483660 - AluJo SINE Alu -1 311 1 285 75 0 0 chr1 30710504 30710544 -251483120 + (CACCC)n Simple_repeat Simple_repeat 3 42 0 1584 178 7 11 chr1 30710595 30710864 -251482800 - AluJo SINE Alu -44 268 1 2318 89 7 3 chr1 30710924 30711217 -251482447 + AluSp SINE Alu 1 294 -19 227 291 25 0 chr1 30711238 30711317 -251482347 - L3 LINE CR1 -1 1576 1496 243 312 26 0 chr1 30711770 30711847 -251481817 - MIR3 SINE MIR -17 191 113 511 285 88 73 chr1 30711850 30712110 -251481554 - L3 LINE CR1 -3 1574 1311 1097 199 5 0 chr1 30712721 30712922 -251480742 + MER105 DNA DNA 2 203 -1 1814 165 4 0 chr1 30713109 30713381 -251480283 + AluJo SINE Alu 3 275 -37 2761 39 0 0 chr1 30713498 30713806 -251479858 - AluY SINE Alu -3 308 1 27 0 0 0 chr1 30713840 30713867 -251479797 + AT_rich Low_complexity Low_complexity 1 27 0 25 0 0 0 chr1 30715347 30715372 -251478292 + AT_rich Low_complexity Low_complexity 1 25 0 769 185 8 0 chr1 30715399 30715529 -251478135 + AluJb SINE Alu 165 295 -17 2034 119 61 3 chr1 30715529 30715822 -251477842 + AluJb SINE Alu 1 310 -2 2257 104 3 3 chr1 30716380 30716679 -251476985 - AluSq SINE Alu -14 299 1 255 314 29 64 chr1 30719020 30719160 -251474504 - L2 LINE L2 -1 3271 3137 651 239 23 72 chr1 30719206 30719362 -251474302 - MIR SINE MIR -6 256 115 2290 104 3 0 chr1 30719362 30719659 -251474005 + AluSx SINE Alu 1 298 -14 651 239 23 72 chr1 30719659 30719768 -251473896 - MIR SINE MIR -147 115 2 2169 98 3 32 chr1 30720130 30720309 -251473355 - AluSq SINE Alu -6 307 139 2520 74 0 3 chr1 30720309 30720619 -251473045 - AluY SINE Alu -2 309 1 2169 98 3 32 chr1 30720619 30720755 -251472909 - AluSq SINE Alu -174 139 1 1617 200 20 3 chr1 30720788 30721093 -251472571 + AluJo SINE Alu 1 310 -2 257 360 2 0 chr1 30721128 30721270 -251472394 + L2 LINE L2 2898 3040 -232 1429 145 64 60 chr1 30721364 30721646 -251472018 + AluJo SINE Alu 13 295 -17 241 253 69 58 chr1 30721651 30721738 -251471926 + L2 LINE L2 3168 3255 -17 296 283 0 33 chr1 30721853 30721945 -251471719 - L2 LINE L2 -218 3054 2966 1899 114 53 13 chr1 30722697 30722996 -251470668 + AluSx SINE Alu 1 311 -1 1976 152 0 7 chr1 30723019 30723322 -251470342 - AluSx SINE Alu -11 301 1 473 253 79 34 chr1 30723391 30723537 -251470127 - MIR SINE MIR -57 205 48 2457 72 0 0 chr1 30723537 30723842 -251469822 - AluY SINE Alu -6 305 1 473 253 79 34 chr1 30723842 30723873 -251469791 - MIR SINE MIR -214 48 20 304 301 29 64 chr1 30724099 30724229 -251469435 - L1 LINE L1 -2890 3256 3132 1688 141 0 23 chr1 30724229 30724353 -251469311 - AluSx SINE Alu -55 257 132 2101 116 0 0 chr1 30724353 30724646 -251469018 - AluSx SINE Alu -19 293 1 1688 141 0 23 chr1 30724646 30724784 -251468880 - AluSx SINE Alu -180 132 1 304 301 29 64 chr1 30724784 30724826 -251468838 - L1 LINE L1 -3014 3132 3090 2253 81 3 10 chr1 30725359 30725666 -251467998 + AluSx SINE Alu 3 307 -5 1979 139 0 7 chr1 30725974 30726276 -251467388 + AluSx SINE Alu 1 300 -12 1359 112 24 0 chr1 30726559 30726764 -251466900 - AluSg/x SINE Alu -18 292 83 21 0 0 0 chr1 30727292 30727313 -251466351 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr1 30730804 30730827 -251462837 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 416 266 166 12 chr1 30730934 30731103 -251462561 + L3 LINE CR1 1382 1576 -1 1706 160 23 13 chr1 30733677 30733977 -251459687 + AluJo SINE Alu 1 303 -9 677 238 74 21 chr1 30734044 30734233 -251459431 - MIR SINE MIR -51 211 13 2339 87 0 10 chr1 30734272 30734606 -251459058 - AluY SINE Alu 0 311 1 326 379 45 20 chr1 30735671 30735869 -251457795 - L3 LINE CR1 -19 1558 1356 240 35 0 0 chr1 30736327 30736356 -251457308 + (TCC)n Simple_repeat Simple_repeat 1 29 0 2404 57 0 10 chr1 30736731 30737045 -251456619 - AluY SINE Alu 0 311 1 222 171 0 0 chr1 30737327 30737368 -251456296 + C-rich Low_complexity Low_complexity 1 41 0 470 211 55 28 chr1 30738873 30738982 -251454682 - MIR SINE MIR -76 132 21 198 0 0 0 chr1 30740556 30740578 -251453086 + (A)n Simple_repeat Simple_repeat 1 22 0 342 274 24 0 chr1 30742924 30743008 -251450656 + MIR SINE MIR 34 119 -89 342 251 272 21 chr1 30743018 30743209 -251450455 - MIR SINE MIR -3 259 21 2037 145 0 0 chr1 30743867 30744171 -251449493 + AluSx SINE Alu 1 304 -8 219 275 50 12 chr1 30744396 30744476 -251449188 + MIR3 SINE MIR 109 191 -17 360 250 11 0 chr1 30744551 30744639 -251449025 - MIR SINE MIR -66 142 54 191 344 16 0 chr1 30746929 30746990 -251446674 - L2 LINE L2 -86 3186 3125 297 301 29 29 chr1 30747824 30747927 -251445737 + MIR SINE MIR 16 118 -90 * 421 236 110 33 chr1 30747907 30748089 -251445575 + L2 LINE L2 3021 3216 -97 250 329 0 14 chr1 30748113 30748186 -251445478 + MIR SINE MIR 109 180 -82 1961 79 29 29 chr1 30748375 30748655 -251445009 - AluSx SINE Alu -32 280 1 275 285 73 32 chr1 30748721 30748844 -251444820 + MIR3 SINE MIR 59 186 -22 2426 69 0 3 chr1 30749135 30749439 -251444225 + AluSx SINE Alu 1 303 -9 536 280 169 0 chr1 30749498 30749687 -251443977 + MIR SINE MIR 23 243 -19 2549 42 0 7 chr1 30749708 30750016 -251443648 + AluY SINE Alu 1 306 -5 21 0 0 0 chr1 30750923 30750944 -251442720 + AT_rich Low_complexity Low_complexity 1 21 0 563 225 23 0 chr1 30755091 30755220 -251438444 + MIR SINE MIR 54 185 -77 531 323 96 14 chr1 30755405 30755696 -251437968 + L2 LINE L2 2997 3311 -2 1916 171 0 0 chr1 30756233 30756542 -251437122 - AluJb SINE Alu -3 309 1 2030 101 6 80 chr1 30756764 30757101 -251436563 - AluSq SINE Alu 0 313 2 378 255 121 15 chr1 30757362 30757516 -251436148 - MIR SINE MIR -81 181 15 213 94 0 0 chr1 30757715 30757747 -251435917 + (TG)n Simple_repeat Simple_repeat 2 33 0 185 316 61 31 chr1 30757834 30757932 -251435732 - L2 LINE L2 -3 3269 3169 254 210 200 50 chr1 30757937 30758037 -251435627 - L2 LINE L2 -7 3306 3192 2225 86 0 3 chr1 30758058 30758349 -251435315 - AluSq SINE Alu -23 290 1 209 294 132 0 chr1 30758418 30758486 -251435178 - L2 LINE L2 -99 3173 3097 2133 109 7 3 chr1 30758508 30758810 -251434854 + AluSq SINE Alu 1 303 -10 387 292 305 14 chr1 30758814 30759181 -251434483 - L2 LINE L2 -16 3297 2824 225 370 14 0 chr1 30759202 30759275 -251434389 - L2 LINE L2 -99 3173 3100 1243 106 0 6 chr1 30759291 30759461 -251434203 + AluSq SINE Alu 1 169 -144 502 231 125 19 chr1 30759464 30759624 -251434040 - L2 LINE L2 -550 2764 2588 252 284 43 74 chr1 30759682 30759844 -251433820 - L2 LINE L2 -205 3067 2911 835 107 0 94 chr1 30759965 30760051 -251433613 + AluSq/x SINE Alu 1 69 -244 2223 89 3 0 chr1 30760051 30760344 -251433320 + AluSp SINE Alu 1 294 -19 835 107 0 94 chr1 30760344 30760406 -251433258 + AluSq/x SINE Alu 69 135 -178 2071 101 0 27 chr1 30760406 30760704 -251432960 + AluY SINE Alu 1 290 -21 42 0 0 0 chr1 30760829 30760871 -251432793 + AT_rich Low_complexity Low_complexity 1 42 0 3096 113 8 15 chr1 30760871 30761348 -251432316 - L1PA6 LINE L1 -1 6153 5680 599 70 2 0 chr1 30761348 30761441 -251432223 - L1PA5 LINE L1 -80 6074 5981 238 282 48 40 chr1 30761605 30761729 -251431935 + MIR SINE MIR 138 262 0 238 125 0 54 chr1 30761804 30761860 -251431804 - L1MA1 LINE L1 -4 6298 6246 180 0 0 0 chr1 30761862 30761882 -251431782 + (TTCA)n Simple_repeat Simple_repeat 3 22 0 717 155 0 0 chr1 30761882 30761985 -251431679 - FRAM SINE Alu -29 147 45 180 50 25 50 chr1 30762114 30762154 -251431510 + (GGAGA)n Simple_repeat Simple_repeat 5 43 0 432 309 0 36 chr1 30762459 30762624 -251431040 + MIR SINE MIR 24 182 -80 214 225 11 45 chr1 30762748 30762837 -251430827 + (CCCCG)n Simple_repeat Simple_repeat 5 90 0 211 219 207 0 chr1 30763970 30764052 -251429612 + MIR SINE MIR 47 145 -63 192 241 0 0 chr1 30764137 30764195 -251429469 - L2 LINE L2 -221 3051 2994 400 319 53 0 chr1 30764469 30764657 -251429007 + MIR SINE MIR 59 256 -6 192 307 40 10 chr1 30765691 30765792 -251427872 - MIR3 SINE MIR -50 158 55 2215 99 3 0 chr1 30767138 30767432 -251426232 + AluSq SINE Alu 1 295 -18 309 213 76 16 chr1 30767458 30767568 -251426096 - MIR SINE MIR -55 153 41 720 167 48 8 chr1 30767568 30767694 -251425970 + FLAM_C SINE Alu 1 131 -2 24 0 0 0 chr1 30767695 30767719 -251425945 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr1 30767981 30768012 -251425652 + AT_rich Low_complexity Low_complexity 1 31 0 699 133 0 0 chr1 30768018 30768123 -251425541 - AluSg/x SINE Alu 0 312 208 1778 121 30 40 chr1 30768469 30768767 -251424897 + AluJb SINE Alu 1 295 -17 1776 145 13 20 chr1 30768783 30768907 -251424757 + AluJo SINE Alu 12 135 -177 2151 121 0 0 chr1 30768907 30769212 -251424452 + AluSx SINE Alu 1 305 -7 1776 145 13 20 chr1 30769212 30769390 -251424274 + AluJo SINE Alu 135 312 0 258 271 53 65 chr1 30769396 30769566 -251424098 - L1ME4a LINE L1 -90 6031 5864 276 345 63 6 chr1 30769578 30769752 -251423912 - L1ME4a LINE L1 -327 5794 5611 313 153 17 0 chr1 30969946 30970005 -251223659 + AluSp/q SINE Alu 242 301 -2 1585 203 3 10 chr1 30970030 30970325 -251223339 + AluJb SINE Alu 3 295 -17 209 332 113 28 chr1 30970348 30970631 -251223033 + L2 LINE L2 2171 2477 -837 1109 161 31 21 chr1 30970676 30970869 -251222795 - AluJb SINE Alu -2 310 116 2198 88 7 10 chr1 30970874 30971170 -251222494 + AluSq SINE Alu 1 295 -18 2025 134 0 3 chr1 30971174 30971479 -251222185 + AluY SINE Alu 4 307 -4 2434 92 10 0 chr1 30971485 30971788 -251221876 + AluSq SINE Alu 1 306 -7 862 141 0 30 chr1 30972009 30972144 -251221520 + FLAM_C SINE Alu 2 132 -1 1534 145 0 5 chr1 30972181 30972402 -251221262 + AluJb SINE Alu 86 305 -7 379 129 106 35 chr1 30972411 30972496 -251221168 + MER5B DNA MER1_type 88 178 0 204 225 0 0 chr1 30972723 30972763 -251220901 + CT-rich Low_complexity Low_complexity 2 41 0 21 0 0 0 chr1 30972814 30972835 -251220829 + AT_rich Low_complexity Low_complexity 1 21 0 2651 68 0 0 chr1 30973076 30973387 -251220277 + AluSq SINE Alu 1 311 -2 1890 128 3 47 chr1 30973932 30974228 -251219436 + AluSx SINE Alu 11 293 -19 739 111 222 0 chr1 30974228 30974345 -251219319 + AluSg/x SINE Alu 132 274 -36 2509 85 0 0 chr1 30974362 30974667 -251218997 + AluSx SINE Alu 1 305 -7 191 282 58 87 chr1 30974765 30974868 -251218796 - L2 LINE L2 -203 3069 2970 397 277 8 17 chr1 30975077 30975196 -251218468 + MIR SINE MIR 66 183 -79 1901 99 33 0 chr1 30975253 30975495 -251218169 + AluSc SINE Alu 1 250 -59 5212 172 16 1 chr1 30975572 30976486 -251217178 + Harlequin LTR ERV1 4616 5543 -1353 228 67 0 0 chr1 30976591 30976621 -251217043 + (C)n Simple_repeat Simple_repeat 1 30 0 373 273 55 60 chr1 30976661 30976844 -251216820 - LTR2 LTR ERV1 -267 182 1 355 250 194 25 chr1 30976872 30977032 -251216632 - MIR SINE MIR -56 206 20 1817 161 0 18 chr1 30977462 30977776 -251215888 + AluJb SINE Alu 1 309 0 2408 94 0 3 chr1 30978076 30978384 -251215280 + AluSx SINE Alu 1 307 -5 1611 165 4 14 chr1 30978707 30978986 -251214678 - AluJb SINE Alu -17 295 20 2031 138 38 0 chr1 30980564 30980854 -251212810 + AluSx SINE Alu 1 301 -11 921 119 6 50 chr1 30981475 30981634 -251212030 + AluSq/x SINE Alu 1 152 -161 192 143 0 0 chr1 30981917 30981945 -251211719 - MIR SINE MIR -20 242 215 2365 85 0 3 chr1 30982191 30982484 -251211180 - AluSg SINE Alu -18 292 1 837 221 25 0 chr1 30982491 30982654 -251211010 - AluSp SINE Alu -16 297 131 1470 64 0 0 chr1 30982660 30982832 -251210832 - AluY SINE Alu -13 298 127 2267 91 7 0 chr1 30982857 30983144 -251210520 - AluSx SINE Alu -23 289 1 189 0 0 0 chr1 30983144 30983165 -251210499 + (T)n Simple_repeat Simple_repeat 1 21 0 369 182 68 0 chr1 30983166 30983254 -251210410 - MER50 LTR ERV1 -142 592 499 2452 72 0 34 chr1 30983280 30983601 -251210063 - AluY SINE Alu -1 310 1 855 115 0 31 chr1 30983613 30983743 -251209921 - FLAM_C SINE Alu -17 126 1 1028 172 0 21 chr1 30983744 30983930 -251209734 - AluJo SINE Alu -11 301 120 1211 181 43 36 chr1 30984168 30984444 -251209220 + AluJo SINE Alu 32 309 -3 318 262 103 62 chr1 30984935 30985080 -251208584 + AluJo SINE Alu 1 151 -151 1975 191 62 9 chr1 30985186 30985636 -251208028 - L1ME LINE L1 -375 5791 5318 714 200 0 0 chr1 30985651 30985766 -251207898 - AluJo SINE Alu -195 117 3 2060 117 7 20 chr1 30985774 30986074 -251207590 - AluSx SINE Alu -16 296 1 948 212 55 11 chr1 30986164 30986247 -251207417 - L1ME LINE L1 -863 5283 5205 2259 106 0 7 chr1 30986247 30986550 -251207114 - AluSg1 SINE Alu -8 301 1 948 212 55 11 chr1 30986550 30986740 -251206924 - L1ME LINE L1 -941 5205 4998 2282 102 0 0 chr1 30986749 30987043 -251206621 - AluSq SINE Alu -17 296 3 231 348 108 19 chr1 30987046 30987204 -251206460 + L2 LINE L2 2586 2757 -557 248 100 0 20 chr1 30987218 30987268 -251206396 + (TG)n Simple_repeat Simple_repeat 1 49 0 748 171 0 57 chr1 30987517 30987657 -251206007 + AluJo/FLAM SINE Alu 1 132 -170 2255 124 7 0 chr1 30987660 30987966 -251205698 + AluSx SINE Alu 1 308 -4 231 296 25 0 chr1 30987996 30988077 -251205587 + MIR SINE MIR 110 192 -70 753 281 43 11 chr1 30988565 30988846 -251204818 + LTR16A LTR ERVL 155 444 -6 1055 158 0 0 chr1 30988991 30989149 -251204515 + AluSx SINE Alu 2 159 -153 480 119 0 0 chr1 30989249 30989316 -251204348 - AluS SINE Alu -245 68 2 1372 221 20 7 chr1 30989322 30989621 -251204043 - AluJo SINE Alu -9 303 1 1795 168 3 20 chr1 30989629 30989927 -251203737 - AluJo SINE Alu -19 293 1 2261 114 3 0 chr1 30989957 30990254 -251203410 + AluSx SINE Alu 1 298 -14 874 207 124 0 chr1 30990275 30990468 -251203196 - MER20 DNA MER1_type -1 218 2 1556 179 58 3 chr1 30990493 30990784 -251202880 + AluJo SINE Alu 1 307 -5 2207 124 0 0 chr1 30990888 30991186 -251202478 - AluSx SINE Alu -14 298 1 222 185 93 0 chr1 30991488 30991542 -251202122 + L2 LINE L2 3206 3264 -8 544 199 48 34 chr1 30992106 30992252 -251201412 - L2 LINE L2 -8 3305 3158 2415 85 0 25 chr1 30992280 30992597 -251201067 - AluY SINE Alu -2 309 1 709 94 0 0 chr1 30992766 30992862 -251200802 + AluSp/q SINE Alu 155 250 -63 1366 135 9 22 chr1 30992862 30993091 -251200573 + AluSg/x SINE Alu 83 308 -2 2357 102 0 7 chr1 30993116 30993419 -251200245 + AluSg SINE Alu 1 301 -9 1649 131 20 116 chr1 30993630 30993772 -251199892 + AluYb8 SINE Alu 1 155 -163 2190 130 0 0 chr1 30993772 30994073 -251199591 + AluSg SINE Alu 1 301 -9 1649 131 20 116 chr1 30994073 30994274 -251199390 + AluYb8 SINE Alu 155 311 -7 974 188 0 18 chr1 30994275 30994445 -251199219 + AluJb SINE Alu 133 299 -13 333 298 37 43 chr1 30995727 30995915 -251197749 - L2 LINE L2 -161 3111 2925 183 299 26 26 chr1 30996041 30996118 -251197546 - L2 LINE L2 -213 3059 2983 250 300 36 45 chr1 30996142 30996252 -251197412 + MIR SINE MIR 41 149 -59 2241 93 10 30 chr1 30996270 30996572 -251197092 - AluSq SINE Alu -17 296 1 225 313 99 42 chr1 30996599 30996791 -251196873 - L2 LINE L2 -1216 2098 1896 1477 122 15 0 chr1 31097392 31097597 -251096067 + AluSx SINE Alu 61 268 -44 262 329 37 0 chr1 31097837 31097919 -251095745 + L2 LINE L2 3139 3223 -49 2503 68 0 0 chr1 31098160 31098468 -251095196 + AluY SINE Alu 1 308 -3 218 325 167 8 chr1 31098550 31098676 -251094988 - L2 LINE L2 -182 3090 2945 1130 108 25 0 chr1 31098780 31098970 -251094694 - AluSg/x SINE Alu 0 312 119 2005 121 10 13 chr1 31099094 31099400 -251094264 + AluSx SINE Alu 4 308 -4 222 330 130 9 chr1 31099820 31099935 -251093729 + L3 LINE CR1 1431 1559 -18 955 108 88 159 chr1 31099981 31100140 -251093524 + MER46B DNA MER2_type 2 171 -2560 2234 82 7 0 chr1 31100140 31100446 -251093218 + AluY SINE Alu 1 308 0 955 108 88 159 chr1 31100446 31100480 -251093184 + MER46B DNA MER2_type 171 46 -2685 1867 138 50 7 chr1 31100480 31100763 -251092901 + AluSg SINE Alu 1 295 -15 955 108 88 159 chr1 31100763 31100863 -251092801 + MER46B DNA MER2_type 45 151 -85 2210 132 0 7 chr1 31100972 31101282 -251092382 - AluSx SINE Alu -4 308 1 2340 93 7 0 chr1 31101293 31101594 -251092070 - AluY SINE Alu -5 306 4 1800 282 30 9 chr1 31101633 31102172 -251091492 - L2 LINE L2 -602 2712 2163 2114 143 0 0 chr1 31102216 31102509 -251091155 - AluJb SINE Alu -14 298 6 2224 89 0 0 chr1 31102509 31102779 -251090885 - AluY SINE Alu -40 271 1 1340 114 0 30 chr1 31102782 31102984 -251090680 - AluSq SINE Alu -18 295 100 2251 106 0 7 chr1 31103085 31103378 -251090286 - AluSx SINE Alu -21 291 1 324 0 0 0 chr1 31103592 31103628 -251090036 + (TG)n Simple_repeat Simple_repeat 1 36 0 660 185 68 48 chr1 31103629 31103775 -251089889 - FRAM SINE Alu -30 146 1 1672 170 3 36 chr1 31103785 31103948 -251089716 - AluJo SINE Alu -16 296 146 2229 125 3 0 chr1 31103948 31104244 -251089420 - AluSx SINE Alu -15 297 1 1672 170 3 36 chr1 31104244 31104386 -251089278 - AluJo SINE Alu -166 146 1 229 156 111 0 chr1 31104451 31104496 -251089168 - L2 LINE L2 0 3313 3264 1313 176 5 5 chr1 31104614 31104835 -251088829 + AluJb SINE Alu 82 302 -10 404 153 0 0 chr1 31104865 31104924 -251088740 + AluS SINE Alu 2 60 -249 1987 110 27 0 chr1 31105024 31105287 -251088377 - AluSc SINE Alu -39 270 1 794 184 102 0 chr1 31105290 31105437 -251088227 - FRAM SINE Alu -17 159 1 2204 125 0 16 chr1 31105709 31106022 -251087642 - AluJb SINE Alu -4 308 1 2040 141 7 0 chr1 31106201 31106500 -251087164 + AluSx SINE Alu 2 302 -10 2391 81 0 14 chr1 31107031 31107326 -251086338 + AluSg SINE Alu 2 292 -18 1475 152 65 96 chr1 31107438 31107760 -251085904 + AluSx SINE Alu 1 312 0 526 269 72 76 chr1 31107760 31107986 -251085678 - L2 LINE L2 -93 3220 2995 2005 112 14 27 chr1 31107986 31108282 -251085382 + AluSq SINE Alu 1 292 -21 2122 101 40 7 chr1 31108284 31108580 -251085084 + AluSg SINE Alu 1 306 -4 526 269 72 76 chr1 31108580 31108614 -251085050 - L2 LINE L2 -319 2994 2958 1391 161 146 26 chr1 31108644 31108911 -251084753 + AluYa8 SINE Alu 1 299 -11 267 268 0 0 chr1 31109061 31109117 -251084547 - Charlie8 DNA MER1_type -2215 202 147 2361 99 6 16 chr1 31109128 31109441 -251084223 - AluSg SINE Alu 0 310 1 1932 158 3 7 chr1 31109442 31109740 -251083924 - AluJb SINE Alu -15 297 1 241 203 145 0 chr1 31109741 31109810 -251083854 + L1ME LINE L1 5690 5768 -402 2751 36 0 0 chr1 31109831 31110140 -251083524 - AluY SINE Alu -2 309 1 424 48 16 0 chr1 31110249 31110312 -251083352 - LTR9B LTR ERV1 -135 509 446 2311 84 7 0 chr1 31110316 31110639 -251083025 - AluY SINE Alu 0 311 4 1441 167 159 0 chr1 31110661 31110912 -251082752 - AluSx SINE Alu -21 291 1 1864 101 97 0 chr1 31110921 31111217 -251082447 - AluSc SINE Alu 0 321 1 2104 129 3 0 chr1 31111217 31111511 -251082153 - AluSq SINE Alu -18 295 1 2228 92 0 20 chr1 31111836 31112141 -251081523 - AluSp SINE Alu -14 299 1 781 129 0 40 chr1 31112142 31112266 -251081398 + FLAM_C SINE Alu 11 129 -14 227 321 78 117 chr1 31112408 31112488 -251081176 - L2 LINE L2 -8 3264 3182 2189 124 0 3 chr1 31112488 31112786 -251080878 + AluSc SINE Alu 1 297 -12 227 321 78 117 chr1 31112786 31112804 -251080860 - L2 LINE L2 -90 3182 3165 2073 120 33 0 chr1 31112804 31113101 -251080563 + AluSp SINE Alu 1 306 0 227 321 78 117 chr1 31113101 31113308 -251080356 - L2 LINE L2 -107 3165 2969 741 123 0 0 chr1 31113308 31113414 -251080250 + AluSg/x SINE Alu 187 292 -17 2383 88 0 3 chr1 31113740 31114037 -251079627 - AluSp SINE Alu -17 296 1 184 281 22 45 chr1 31114373 31114462 -251079202 + MIR SINE MIR 61 147 -115 2000 105 10 64 chr1 31114523 31114836 -251078828 - AluSx SINE Alu -16 296 1 1795 77 0 5 chr1 31114929 31115151 -251078513 + AluSg/x SINE Alu 82 302 -10 240 274 27 14 chr1 31115212 31115285 -251078379 - MIR SINE MIR -115 147 74 2447 71 7 0 chr1 31115361 31115670 -251077994 + AluY SINE Alu 1 311 0 2035 146 0 3 chr1 31115746 31116040 -251077624 + AluJb SINE Alu 1 293 -19 229 91 0 0 chr1 31116564 31116597 -251077067 - L2 LINE L2 -165 3148 3116 807 200 100 42 chr1 31116708 31116968 -251076696 + L2 LINE L2 970 1244 -2070 1207 52 13 19 chr1 31117009 31117164 -251076500 - AluY SINE Alu -16 295 142 180 196 155 93 chr1 31117413 31117491 -251076173 - MIR SINE MIR -79 183 96 2143 123 7 7 chr1 31117491 31117792 -251075872 + AluSx SINE Alu 3 303 -9 180 196 155 93 chr1 31117792 31117810 -251075854 - MIR SINE MIR -166 96 81 744 210 34 39 chr1 31117986 31118191 -251075473 + MER63A DNA MER1_type 4 207 -3 2218 98 9 19 chr1 31118365 31118680 -251074984 - AluSp SINE Alu -1 312 1 1124 188 0 0 chr1 31119151 31119327 -251074337 - FRAM SINE Alu -8 168 1 332 141 0 0 chr1 31119347 31119425 -251074239 - Charlie5 DNA MER1_type -121 2491 2414 2620 57 0 0 chr1 31119433 31119733 -251073931 + AluY SINE Alu 1 300 -11 1934 70 0 4 chr1 31119743 31120002 -251073662 + L1PA8A LINE L1 5845 6102 -29 180 0 0 0 chr1 31120010 31120030 -251073634 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 1342 152 0 0 chr1 31120359 31120557 -251073107 - AluSg/x SINE Alu -10 302 105 412 159 0 14 chr1 31120557 31120626 -251073038 + AluS SINE Alu 225 292 -17 454 100 57 0 chr1 31120749 31120819 -251072845 - HERVL LTR ERVL -3940 1714 1641 680 188 7 51 chr1 31120820 31120958 -251072706 + FLAM_C SINE Alu 2 133 0 1029 110 7 14 chr1 31120963 31121108 -251072556 + AluSq/x SINE Alu 1 144 -169 2273 122 0 3 chr1 31121108 31121411 -251072253 + AluSq SINE Alu 1 302 -11 1826 173 0 20 chr1 31121414 31121552 -251072112 + AluSx SINE Alu 1 140 -172 1932 141 48 0 chr1 31121552 31121843 -251071821 + AluSx SINE Alu 1 305 -7 1826 173 0 20 chr1 31121843 31122010 -251071654 + AluSx SINE Alu 140 300 -12 2420 141 0 18 chr1 31122029 31122413 -251071251 - HERVL LTR ERVL -4074 1580 1204 1008 163 28 6 chr1 31122420 31122598 -251071066 + AluJb SINE Alu 116 297 -15 1801 80 13 4 chr1 31122598 31122824 -251070840 + AluSg SINE Alu 1 228 -82 1122 170 0 49 chr1 31122824 31123048 -251070616 + AluY SINE Alu 94 306 -5 2106 119 0 3 chr1 31123057 31123370 -251070294 + AluSq SINE Alu 1 312 0 1612 185 3 31 chr1 31123371 31123727 -251069937 + L1MB4 LINE L1 5605 5950 -233 1921 142 0 43 chr1 31123728 31124031 -251069633 + AluSx SINE Alu 1 290 -22 289 83 0 0 chr1 31124032 31124080 -251069584 + L1MB4 LINE L1 6133 6180 0 218 244 39 64 chr1 31124207 31124285 -251069379 + MIR SINE MIR 187 262 0 265 230 20 80 chr1 31124285 31124385 -251069279 + LTR44 LTR ERV1 1 94 -425 331 102 0 0 chr1 31124486 31124535 -251069129 + Alu SINE Alu 251 299 -3 410 286 131 99 chr1 31125011 31125133 -251068531 + L2 LINE L2 2207 2324 -990 2484 55 7 0 chr1 31125133 31125424 -251068240 - AluSp SINE Alu -20 293 1 410 286 131 99 chr1 31125424 31125919 -251067745 + L2 LINE L2 2324 2844 -470 486 0 0 0 chr1 31126038 31126092 -251067572 + (TG)n Simple_repeat Simple_repeat 1 54 0 1831 170 3 3 chr1 31126092 31126368 -251067296 - AluJo SINE Alu -28 284 6 365 268 91 72 chr1 31126453 31126662 -251067002 + L2 LINE L2 3099 3311 -2 2250 110 28 0 chr1 31126779 31127070 -251066594 - AluSg SINE Alu -11 299 1 2016 161 0 0 chr1 31127070 31127368 -251066296 - AluJo SINE Alu -14 298 1 2394 103 0 0 chr1 31127446 31127748 -251065916 - AluSg SINE Alu -8 302 1 2482 86 0 0 chr1 31128284 31128588 -251065076 - AluSx SINE Alu -8 304 1 474 254 70 0 chr1 31129275 31129389 -251064275 - L2 LINE L2 -1 3271 3150 1504 214 10 14 chr1 31129417 31129712 -251063952 + AluJo SINE Alu 1 294 -18 475 131 61 0 chr1 31129718 31129817 -251063847 + Charlie4 DNA MER1_type 1824 1928 -33 180 324 56 14 chr1 31129962 31130033 -251063631 - L2 LINE L2 -216 3056 2983 2471 68 10 0 chr1 31131020 31131314 -251062350 + AluSp SINE Alu 1 297 -16 1422 81 0 0 chr1 31131882 31132056 -251061608 + AluY SINE Alu 123 296 -15 975 26 0 0 chr1 31132261 31132377 -251061287 + L1PA5 LINE L1 6038 6153 -1 2343 57 10 29 chr1 31132417 31132769 -251060895 + AluY SINE Alu 1 311 0 2317 88 20 3 chr1 31132808 31133105 -251060559 - AluSq SINE Alu -11 302 1 197 33 33 0 chr1 31133160 31133190 -251060474 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1552 129 7 100 chr1 31133195 31133504 -251060160 - AluJb SINE Alu -29 283 4 747 172 112 18 chr1 31133508 31133677 -251059987 + AluJo SINE Alu 121 305 -7 1952 66 45 63 chr1 31134168 31134312 -251059352 + AluSc SINE Alu 2 147 -162 2279 92 0 0 chr1 31134312 31134619 -251059045 + AluSq SINE Alu 1 307 0 1952 66 45 63 chr1 31134619 31134786 -251058878 + AluSc SINE Alu 147 309 0 22 0 0 0 chr1 31135759 31135781 -251057883 + GC_rich Low_complexity Low_complexity 1 22 0 43 116 0 0 chr1 31135816 31136015 -251057649 + GC_rich Low_complexity Low_complexity 1 199 0 20577 86 4 16 chr1 31136122 31136135 -251057529 + HERVL LTR ERVL 1717 1729 -3925 2361 97 3 0 chr1 31136135 31136433 -251057231 + AluSp SINE Alu 1 299 -14 20577 86 4 16 chr1 31136433 31136978 -251056686 + HERVL LTR ERVL 1729 2279 -3375 2215 123 0 3 chr1 31136978 31137279 -251056385 + AluSq SINE Alu 1 300 -13 20577 86 4 16 chr1 31137279 31139047 -251054617 + HERVL LTR ERVL 2279 4007 -1647 2364 93 0 7 chr1 31139047 31139348 -251054316 - AluSc SINE Alu -10 299 1 20577 86 4 16 chr1 31139348 31139878 -251053786 + HERVL LTR ERVL 4007 4542 -1112 21 0 0 0 chr1 31139983 31140004 -251053660 + AT_rich Low_complexity Low_complexity 1 21 0 213 65 0 0 chr1 31140546 31140577 -251053087 + (T)n Simple_repeat Simple_repeat 1 31 0 212 300 57 0 chr1 31140908 31140996 -251052668 + MIR SINE MIR 32 123 -85 23 0 0 0 chr1 31141023 31141046 -251052618 + AT_rich Low_complexity Low_complexity 1 23 0 2299 112 3 0 chr1 31141051 31141354 -251052310 + AluSq SINE Alu 1 304 -9 2291 110 0 23 chr1 31141363 31141672 -251051992 + AluSx SINE Alu 3 304 -8 322 364 0 0 chr1 31141681 31141791 -251051873 + MIR SINE MIR 151 260 -2 423 0 0 0 chr1 31142157 31142204 -251051460 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 821 135 0 0 chr1 31142252 31142363 -251051301 + AluJb SINE Alu 2 112 -200 1137 173 48 10 chr1 31142365 31142573 -251051091 - AluJo SINE Alu -12 300 85 2214 122 3 0 chr1 31142602 31142897 -251050767 + AluSx SINE Alu 1 296 -16 2311 101 3 3 chr1 31143572 31143869 -251049795 - AluSg SINE Alu -13 297 1 765 105 0 0 chr1 31143869 31143974 -251049690 - AluSg1 SINE Alu -12 298 194 1056 70 0 8 chr1 31143974 31144103 -251049561 - AluSg1 SINE Alu -181 128 1 27 29 0 0 chr1 31144143 31144177 -251049487 + AT_rich Low_complexity Low_complexity 1 34 0 701 259 116 58 chr1 31144177 31144505 -251049159 + L1ME4a LINE L1 5625 5971 -150 2375 89 0 16 chr1 31144543 31144846 -251048818 - AluSc SINE Alu -11 298 1 340 222 231 0 chr1 31144889 31144997 -251048667 - FRAM SINE Alu -33 133 1 1174 404 3 27 chr1 31145027 31145324 -251048340 - AluSx SINE Alu -8 294 5 1650 181 4 0 chr1 31145324 31145594 -251048070 - AluSq SINE Alu -42 271 1 363 44 0 0 chr1 31146387 31146432 -251047232 + (TA)n Simple_repeat Simple_repeat 1 45 0 2351 106 3 0 chr1 31146432 31146735 -251046929 - AluSp SINE Alu -9 304 1 554 130 0 0 chr1 31147008 31147085 -251046579 + AluSc SINE Alu 2 78 -231 2406 75 0 3 chr1 31147085 31147379 -251046285 + AluY SINE Alu 1 293 -18 1808 99 0 37 chr1 31147379 31147621 -251046043 + AluSc SINE Alu 63 296 -13 2484 83 0 0 chr1 31147623 31147923 -251045741 + AluY SINE Alu 3 302 -9 2328 90 10 0 chr1 31147941 31148231 -251045433 + AluSx SINE Alu 13 305 -7 1699 159 66 10 chr1 31148624 31148913 -251044751 + AluJb SINE Alu 1 305 -7 2166 117 0 42 chr1 31148919 31149062 -251044602 + AluSg SINE Alu 1 148 -162 2548 66 0 7 chr1 31149062 31149367 -251044297 + AluY SINE Alu 1 303 -8 2166 117 0 42 chr1 31149367 31149532 -251044132 + AluSg SINE Alu 148 296 -14 1203 206 0 52 chr1 31149701 31149953 -251043711 - MER8 DNA MER2_type 0 239 1 2446 50 10 13 chr1 31150100 31150399 -251043265 - AluY SINE Alu -13 298 1 1796 189 31 0 chr1 31150405 31150691 -251042973 - AluJo SINE Alu -17 295 1 1512 60 0 22 chr1 31151601 31151784 -251041880 + AluY SINE Alu 1 179 -132 637 88 0 0 chr1 31151784 31151875 -251041789 + AluY SINE Alu 218 308 -3 270 267 126 26 chr1 31151884 31151981 -251041683 - MIR SINE MIR -93 115 13 315 280 40 72 chr1 31152128 31152211 -251041453 - L2 LINE L2 0 3272 3193 2355 103 6 3 chr1 31152211 31152523 -251041141 + AluSp SINE Alu 1 313 0 315 280 40 72 chr1 31152523 31152564 -251041100 - L2 LINE L2 -79 3193 3152 39 60 0 0 chr1 31152675 31152742 -251040922 + AT_rich Low_complexity Low_complexity 1 67 0 464 212 40 13 chr1 31153221 31153351 -251040313 - MIR SINE MIR -62 146 62 228 146 0 49 chr1 31153397 31153438 -251040226 + AluY SINE Alu 87 125 -177 2408 80 0 7 chr1 31153440 31153739 -251039925 - AluSx SINE Alu -15 297 1 898 165 0 37 chr1 31153739 31153903 -251039761 + AluY SINE Alu 115 272 -39 329 312 147 23 chr1 31154030 31154248 -251039416 - MIR SINE MIR 0 262 18 1088 121 4 143 chr1 31154297 31154457 -251039207 - AluSg/x SINE Alu -23 289 169 189 0 0 0 chr1 31154457 31154478 -251039186 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 1088 121 4 143 chr1 31154478 31154548 -251039116 - AluSg/x SINE Alu -143 169 91 2258 114 0 0 chr1 31154578 31154877 -251038787 + AluSg SINE Alu 1 299 -11 895 100 0 8 chr1 31154896 31155016 -251038648 - FLAM_C SINE Alu -24 119 1 2063 107 0 7 chr1 31155740 31156021 -251037643 + AluSc SINE Alu 24 302 -7 1995 160 6 10 chr1 31156154 31156466 -251037198 - AluJb SINE Alu -1 311 1 3630 177 33 83 chr1 31156475 31157251 -251036413 - MER21B LTR ERV1 -22 841 27 2262 92 0 57 chr1 31157251 31157566 -251036098 + AluSc SINE Alu 2 298 -11 3630 177 33 83 chr1 31157566 31157582 -251036082 - MER21B LTR ERV1 -836 27 95 2515 49 3 23 chr1 31157582 31157887 -251035777 + AluY SINE Alu 1 299 -12 3630 177 33 83 chr1 31157887 31157979 -251035685 - MER21B LTR ERV1 -767 96 1 945 223 0 0 chr1 31158475 31158650 -251035014 + FAM SINE Alu 1 175 0 240 288 110 14 chr1 31158665 31158738 -251034926 - MIR SINE MIR -107 101 22 2472 55 7 19 chr1 31160028 31160335 -251033329 + AluSq SINE Alu 1 303 -10 2409 79 3 23 chr1 31160521 31160826 -251032838 + AluSx SINE Alu 1 299 -13 1489 65 0 0 chr1 31161551 31161720 -251031944 - AluSq SINE Alu -144 169 1 2204 116 3 0 chr1 31161774 31162068 -251031596 - AluSx SINE Alu -17 295 1 283 275 53 76 chr1 31162353 31162484 -251031180 - L2 LINE L2 -229 3043 2916 1695 156 57 11 chr1 31162507 31162789 -251030875 + AluJo SINE Alu 11 305 -7 2193 110 0 20 chr1 31162810 31163102 -251030562 - AluSg SINE Alu -24 286 1 204 327 109 40 chr1 31163543 31163644 -251030020 - MIR3 SINE MIR -7 201 94 552 268 78 123 chr1 31163679 31163822 -251029842 + L2 LINE L2 2145 2293 -1021 1942 145 3 39 chr1 31163822 31163997 -251029667 - AluJo SINE Alu -13 299 138 198 0 0 0 chr1 31163997 31164019 -251029645 + (TA)n Simple_repeat Simple_repeat 2 23 0 1942 145 3 39 chr1 31164019 31164153 -251029511 - AluJo SINE Alu -174 138 1 552 268 78 123 chr1 31164153 31164179 -251029485 + L2 LINE L2 2293 2319 -995 2524 63 3 0 chr1 31164179 31164481 -251029183 - AluY SINE Alu -8 303 1 552 268 78 123 chr1 31164481 31164730 -251028934 + L2 LINE L2 2319 2578 -736 2420 97 0 0 chr1 31164730 31165038 -251028626 - AluSc SINE Alu -1 308 1 679 200 15 8 chr1 31165040 31165170 -251028494 - AluJo/FLAM SINE Alu -169 133 3 552 268 78 123 chr1 31165170 31165365 -251028299 + L2 LINE L2 2579 2735 -579 2253 84 38 0 chr1 31165399 31165686 -251027978 - AluY SINE Alu -13 298 1 1141 160 0 0 chr1 31165688 31165857 -251027807 - AluSg/x SINE Alu -15 295 127 427 268 97 40 chr1 31165867 31165984 -251027680 + L2 LINE L2 2819 2928 -344 2344 92 0 6 chr1 31165984 31166298 -251027366 - AluSq SINE Alu -1 312 1 427 268 97 40 chr1 31166298 31166408 -251027256 + L2 LINE L2 2928 3059 -213 203 119 262 0 chr1 31166539 31166581 -251027083 + L2 LINE L2 3255 3307 -6 25 0 0 28 chr1 31166980 31166997 -251026667 + AT_rich Low_complexity Low_complexity 1 17 -18 2149 123 0 3 chr1 31166997 31167305 -251026359 - AluSx SINE Alu -5 307 1 25 0 0 28 chr1 31167305 31167323 -251026341 + AT_rich Low_complexity Low_complexity 17 35 0 331 284 75 45 chr1 31167324 31167458 -251026206 - MIR SINE MIR -75 187 50 2168 79 7 7 chr1 31167590 31167896 -251025768 - AluSc SINE Alu 0 309 4 321 316 111 12 chr1 31168396 31168567 -251025097 + MIR SINE MIR 69 256 -6 22 0 0 0 chr1 31169267 31169289 -251024375 + GC_rich Low_complexity Low_complexity 1 22 0 2083 118 26 7 chr1 31170865 31171171 -251022493 - AluSx SINE Alu 0 312 1 638 192 0 33 chr1 31171525 31171645 -251022019 + FAM SINE Alu 49 164 -21 1746 118 66 21 chr1 31171744 31172033 -251021631 - AluSq SINE Alu -11 302 1 2212 96 0 3 chr1 31173124 31173436 -251020228 - AluY SINE Alu 0 311 1 1048 133 6 0 chr1 31173437 31173595 -251020069 - AluSg/x SINE Alu -18 294 136 1717 140 24 3 chr1 31173695 31173987 -251019677 - AluSx SINE Alu -14 298 1 921 82 0 22 chr1 31174441 31174575 -251019089 - AluSq SINE Alu -13 300 170 827 107 0 0 chr1 31174575 31174687 -251018977 - AluSq SINE Alu -200 113 2 1533 156 32 3 chr1 31177076 31177358 -251016306 - AluJb SINE Alu -22 290 1 1784 103 65 0 chr1 31177845 31178106 -251015558 + AluSp SINE Alu 1 278 -35 1819 156 3 0 chr1 31178151 31178446 -251015218 + AluJo SINE Alu 1 296 -16 1663 128 0 67 chr1 31178850 31179162 -251014502 + AluSx SINE Alu 1 291 -21 2204 79 10 3 chr1 31179195 31179486 -251014178 + AluSp SINE Alu 1 293 -20 1334 82 0 0 chr1 31179684 31179855 -251013809 + AluSg SINE Alu 2 172 -138 1708 101 4 8 chr1 31179957 31180205 -251013459 - AluY SINE Alu -64 247 1 1687 147 7 23 chr1 31180209 31180516 -251013148 - AluJb SINE Alu 0 312 11 1745 78 109 4 chr1 31180543 31180799 -251012865 - AluSc SINE Alu -26 283 1 1034 83 0 0 chr1 31180799 31180932 -251012732 - AluSc SINE Alu -176 133 1 1272 171 0 0 chr1 31180969 31181180 -251012484 - AluJb SINE Alu -99 213 3 1942 121 24 10 chr1 31181191 31181488 -251012176 - AluSx SINE Alu -11 301 1 1588 139 0 0 chr1 31181499 31181743 -251011921 - AluSq SINE Alu -17 296 53 519 298 140 45 chr1 31181969 31182203 -251011461 + L2 LINE L2 2524 2734 -579 1931 125 63 0 chr1 31182203 31182490 -251011174 - AluSg SINE Alu -5 305 1 519 298 140 45 chr1 31182490 31182909 -251010755 + L2 LINE L2 2734 3299 -14 669 198 0 0 chr1 31183205 31183326 -251010338 + FRAM SINE Alu 1 121 -55 186 43 0 0 chr1 31183343 31183366 -251010298 + (CAA)n Simple_repeat Simple_repeat 2 24 0 189 133 0 0 chr1 31183465 31183495 -251010169 + MIR SINE MIR 110 139 -69 1018 211 5 0 chr1 31183509 31183703 -251009961 - LTR44 LTR ERV1 -3 516 322 2317 79 13 0 chr1 31183708 31184012 -251009652 - AluSp SINE Alu -5 308 1 2036 114 0 3 chr1 31184012 31184309 -251009355 - AluY SINE Alu -15 296 1 562 204 210 0 chr1 31184315 31184491 -251009173 + L2 LINE L2 1295 1507 -1807 528 197 299 14 chr1 31184495 31184642 -251009022 + MER5A DNA MER1_type 1 189 0 2514 250 124 30 chr1 31184646 31184730 -251008934 + L2 LINE L2 1514 1589 -1725 1633 147 39 7 chr1 31184730 31185036 -251008628 + AluJb SINE Alu 1 312 0 2514 250 124 30 chr1 31185036 31185157 -251008507 + L2 LINE L2 1589 1697 -1617 1823 174 7 0 chr1 31185157 31185467 -251008197 - AluJb SINE Alu 0 312 1 2514 250 124 30 chr1 31185467 31186019 -251007645 + L2 LINE L2 1697 2375 -939 2232 92 7 0 chr1 31186019 31186314 -251007350 - AluSx SINE Alu -15 297 1 2514 250 124 30 chr1 31186314 31186474 -251007190 + L2 LINE L2 2375 2519 -795 1950 167 61 63 chr1 31186488 31186948 -251006716 - LTR2B LTR ERV1 0 490 32 927 281 105 16 chr1 31186955 31187471 -251006193 + L2 LINE L2 2557 3110 -203 297 333 92 7 chr1 31187671 31187812 -251005852 + MIR3 SINE MIR 20 172 -36 246 272 22 11 chr1 31187822 31187914 -251005750 + L2 LINE L2 2500 2592 -722 421 70 35 0 chr1 31187920 31187977 -251005687 - AluSp/q SINE Alu -91 222 164 2247 74 7 10 chr1 31187977 31188275 -251005389 - AluY SINE Alu -14 297 1 1311 87 22 0 chr1 31188456 31188641 -251005023 + AluY SINE Alu 108 296 -15 379 253 227 20 chr1 31188845 31188995 -251004669 - MIR SINE MIR -48 214 34 24 53 0 0 chr1 31189232 31189270 -251004394 + AT_rich Low_complexity Low_complexity 1 38 0 221 171 0 0 chr1 31189550 31189591 -251004073 + A-rich Low_complexity Low_complexity 1 41 0 195 229 125 0 chr1 31190440 31190488 -251003176 - L2 LINE L2 -2 3311 3258 1882 122 35 3 chr1 31190746 31191032 -251002632 + AluSx SINE Alu 1 295 -17 221 231 0 0 chr1 31191225 31191264 -251002400 + polypyrimidine Low_complexity Low_complexity 4 42 0 696 84 72 18 chr1 31191265 31191432 -251002232 + CT-rich Low_complexity Low_complexity 4 179 0 1905 135 16 13 chr1 31191463 31191774 -251001890 - AluSx SINE Alu 0 312 1 1034 133 19 0 chr1 31192411 31192569 -251001095 + AluSg/x SINE Alu 95 255 -55 2641 209 143 15 chr1 31192654 31193212 -251000452 - L1MC4a LINE L1 -6 7807 7322 1215 190 122 4 chr1 31193212 31193475 -251000189 - AluJo SINE Alu -7 295 2 2641 209 143 15 chr1 31193475 31193752 -250999912 - L1MC4a LINE L1 -491 7322 7082 1148 188 156 0 chr1 31193752 31194002 -250999662 + AluJo SINE Alu 1 289 -13 2641 209 143 15 chr1 31194002 31194115 -250999549 - L1MC4a LINE L1 -731 7082 6795 1882 128 20 7 chr1 31194134 31194439 -250999225 - AluSg SINE Alu -1 309 1 2074 96 0 42 chr1 31194810 31195123 -250998541 + AluSq SINE Alu 1 300 -13 181 281 22 45 chr1 31196180 31196269 -250997395 + MIR SINE MIR 61 147 -115 1860 105 10 64 chr1 31196330 31196643 -250997021 - AluSx SINE Alu -16 296 1 1656 78 0 5 chr1 31196739 31196958 -250996706 + AluSg/x SINE Alu 85 302 -10 238 274 27 14 chr1 31197019 31197092 -250996572 - MIR SINE MIR -115 147 74 2324 63 0 0 chr1 31197168 31197490 -250996174 + AluY SINE Alu 1 322 0 1514 177 3 38 chr1 31197833 31198150 -250995514 + AluJo SINE Alu 1 306 -6 293 109 62 47 chr1 31198198 31198262 -250995402 + L1MC4 LINE L1 6954 7018 -1024 1098 173 117 4 chr1 31198263 31198512 -250995152 + L1MC4 LINE L1 7177 7453 -589 1267 173 46 59 chr1 31198559 31198865 -250994799 + AluJb SINE Alu 1 302 -10 981 225 66 38 chr1 31198870 31199190 -250994474 + L1MC4 LINE L1 7620 7948 -94 1261 174 47 74 chr1 31199217 31199333 -250994331 + AluJo SINE Alu 1 119 -183 198 0 0 0 chr1 31199333 31199355 -250994309 + (CAA)n Simple_repeat Simple_repeat 3 24 0 1261 174 47 74 chr1 31199355 31199536 -250994128 + AluJo SINE Alu 119 290 -12 1294 125 121 12 chr1 31199670 31199910 -250993754 + AluJb SINE Alu 1 266 -46 883 147 19 6 chr1 31199956 31200112 -250993552 + FAM SINE Alu 1 47 -2 1044 164 5 15 chr1 31200126 31200327 -250993337 + AluSx SINE Alu 1 199 -113 500 86 14 0 chr1 31200327 31200397 -250993267 + AluSq SINE Alu 67 137 -175 2011 112 6 19 chr1 31200397 31200709 -250992955 + AluSg1 SINE Alu 1 308 -1 2264 76 3 16 chr1 31200719 31201035 -250992629 + AluSp SINE Alu 1 312 -1 312 181 145 12 chr1 31201042 31201125 -250992539 + L1M4 LINE L1 3126 3219 -2927 245 114 0 0 chr1 31201125 31201169 -250992495 + L1MA7 LINE L1 6234 6277 -14 1025 131 6 23 chr1 31201203 31201218 -250992446 + AluSq SINE Alu 121 135 -178 2105 112 0 13 chr1 31201218 31201531 -250992133 + AluSc SINE Alu 1 309 0 1025 131 6 23 chr1 31201531 31201690 -250991974 + AluSq SINE Alu 135 292 -21 1796 121 53 14 chr1 31201846 31202128 -250991536 + AluSx SINE Alu 1 293 -19 185 83 0 0 chr1 31202131 31202155 -250991509 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2359 56 0 0 chr1 31202575 31202862 -250990802 - AluY SINE Alu -24 287 1 22 0 0 0 chr1 31203106 31203128 -250990536 + AT_rich Low_complexity Low_complexity 1 22 0 423 202 158 9 chr1 31203135 31203237 -250990427 + AluJo SINE Alu 5 127 -185 2035 80 22 4 chr1 31203237 31203513 -250990151 - AluSp SINE Alu -27 286 6 423 202 158 9 chr1 31203513 31203524 -250990140 + AluJo SINE Alu 127 135 -177 1529 177 19 29 chr1 31203535 31203845 -250989819 + AluJb SINE Alu 1 307 -5 198 0 0 0 chr1 31203846 31203868 -250989796 + (CA)n Simple_repeat Simple_repeat 2 23 0 2752 157 82 6 chr1 31203868 31204095 -250989569 + Tigger3b DNA MER2_type 4 212 -2816 1955 126 3 10 chr1 31204095 31204388 -250989276 + AluSx SINE Alu 1 291 -21 1923 92 26 4 chr1 31204388 31204659 -250989005 + AluY SINE Alu 1 278 -33 306 0 0 0 chr1 31204659 31204693 -250988971 + (CA)n Simple_repeat Simple_repeat 1 34 0 2752 157 82 6 chr1 31204693 31204987 -250988677 + Tigger3b DNA MER2_type 211 567 -664 2043 122 0 3 chr1 31204988 31205291 -250988373 - AluSx SINE Alu -10 302 1 1656 124 71 4 chr1 31205294 31205560 -250988104 + Tigger3b DNA MER2_type 948 1231 0 370 280 56 0 chr1 31205773 31205880 -250987784 - MER5A DNA MER1_type -8 181 69 198 270 54 40 chr1 31205986 31206060 -250987604 + MER5B DNA MER1_type 81 155 -23 202 250 29 88 chr1 31206193 31206261 -250987403 + MIR SINE MIR 30 94 -114 1097 189 161 0 chr1 31206592 31206841 -250986823 - AluJo SINE Alu -23 289 1 198 321 223 23 chr1 31206869 31207084 -250986580 + MIR SINE MIR 5 262 0 321 300 94 38 chr1 31207107 31207267 -250986397 + L1ME4a LINE L1 5908 6076 -45 225 0 0 0 chr1 31208150 31208175 -250985489 + (CAGG)n Simple_repeat Simple_repeat 2 26 0 1107 164 103 0 chr1 31209033 31209247 -250984417 - MER46A DNA MER2_type 0 236 1 479 292 56 52 chr1 31209382 31209615 -250984049 + MIR SINE MIR 29 262 0 206 171 139 108 chr1 31209697 31209826 -250983838 + L2 LINE L2 2266 2398 -916 191 281 47 94 chr1 31209849 31209977 -250983687 + L2 LINE L2 2531 2652 -662 863 130 80 49 chr1 31209978 31210140 -250983524 - AluSg/x SINE Alu -12 300 134 1791 112 72 0 chr1 31210140 31210418 -250983246 - AluSq SINE Alu -15 298 1 1914 122 0 7 chr1 31210420 31210714 -250982950 - AluSx SINE Alu -20 292 1 288 307 157 0 chr1 31210724 31210864 -250982800 + MIR SINE MIR 91 252 -10 2217 103 0 3 chr1 31210953 31211263 -250982401 + AluSx SINE Alu 1 309 -3 1451 159 10 92 chr1 31211407 31211721 -250981943 - AluJb SINE Alu -24 288 1 989 167 167 83 chr1 31211835 31211905 -250981759 + MER63 DNA MER1_type 490 553 -508 1661 160 10 10 chr1 31211905 31212193 -250981471 - AluJo SINE Alu -18 294 7 989 167 167 83 chr1 31212193 31212366 -250981298 + MER63 DNA MER1_type 553 771 -290 1876 120 27 17 chr1 31212366 31212666 -250980998 + AluSg SINE Alu 1 303 -7 989 167 167 83 chr1 31212666 31212757 -250980907 + MER63 DNA MER1_type 771 853 -208 325 240 150 0 chr1 31212868 31212968 -250980696 + MIR SINE MIR 33 147 -115 180 179 0 0 chr1 31212998 31213026 -250980638 - L2 LINE L2 -28 3285 3258 1087 99 13 0 chr1 31213696 31213848 -250979816 - AluSg/x SINE Alu -22 290 137 1873 153 7 0 chr1 31213849 31214149 -250979515 - AluSx SINE Alu -10 302 1 21 71 0 0 chr1 31214189 31214231 -250979433 + AT_rich Low_complexity Low_complexity 1 42 0 201 320 244 5 chr1 31214462 31214659 -250979005 - L3 LINE CR1 -45 1532 1289 2211 105 7 0 chr1 31214671 31214977 -250978687 + AluSq SINE Alu 1 308 -5 2096 57 40 27 chr1 31215488 31215785 -250977879 + AluY SINE Alu 9 309 -2 293 269 99 23 chr1 31216010 31216181 -250977483 + L1ME LINE L1 5677 5860 -261 558 312 210 32 chr1 31216903 31217547 -250976117 + L2 LINE L2 2000 2797 -517 2298 74 3 3 chr1 31217547 31217844 -250975820 + AluSp SINE Alu 2 298 -15 558 312 210 32 chr1 31217844 31217948 -250975716 + L2 LINE L2 2797 2881 -433 273 75 0 0 chr1 31217956 31217996 -250975668 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 245 187 176 44 chr1 31218002 31218093 -250975571 - L2 LINE L2 -14 3299 3197 * 371 342 123 31 chr1 31218070 31218421 -250975243 + L2 LINE L2 2890 3272 0 2141 108 0 3 chr1 31218544 31218849 -250974815 - AluSx SINE Alu -8 304 1 249 309 100 9 chr1 31218992 31219102 -250974562 + MIR SINE MIR 18 137 -71 303 296 143 67 chr1 31219213 31219436 -250974228 + MIR SINE MIR 12 251 -11 2166 110 3 0 chr1 31219485 31219795 -250973869 + AluSp SINE Alu 1 311 -2 2147 103 7 3 chr1 31220017 31220318 -250973346 + AluSx SINE Alu 1 302 -10 1603 144 12 0 chr1 31220340 31220597 -250973067 - AluJb SINE Alu -15 297 38 1408 191 35 11 chr1 31220597 31220879 -250972785 - L1ME3 LINE L1 -16 6146 5858 1653 134 78 0 chr1 31220879 31221162 -250972502 + AluJo SINE Alu 1 305 -7 463 273 28 7 chr1 31221639 31221782 -250971882 - LTR67 LTR ERVL -1 556 411 2081 135 0 0 chr1 31221876 31222173 -250971491 - AluSx SINE Alu -15 297 1 38 85 0 0 chr1 31223082 31223176 -250970488 + AT_rich Low_complexity Low_complexity 1 94 0 1991 141 7 3 chr1 31223189 31223486 -250970178 - AluJb SINE Alu -14 298 1 2235 133 0 0 chr1 31223679 31223987 -250969677 + AluSx SINE Alu 2 309 -3 2230 97 17 3 chr1 31224272 31224561 -250969103 - AluSx SINE Alu -18 294 2 2441 91 3 0 chr1 31226142 31226450 -250967214 + AluSp SINE Alu 1 309 -4 2151 127 0 3 chr1 31226538 31226829 -250966835 - AluSx SINE Alu -22 290 1 295 289 19 39 chr1 31227616 31227720 -250965944 + L2 LINE L2 3162 3263 -50 1640 161 19 47 chr1 31227730 31227787 -250965877 - MLT2D LTR ERVL -2 412 355 2299 104 0 0 chr1 31227787 31228084 -250965580 - AluY SINE Alu -14 297 1 1640 161 19 47 chr1 31228084 31228348 -250965316 - MLT2D LTR ERVL -59 355 100 1816 184 0 0 chr1 31228348 31228641 -250965023 + AluJo SINE Alu 1 293 -19 252 241 17 0 chr1 31229134 31229192 -250964472 - MIR3 SINE MIR -36 172 114 320 306 30 22 chr1 31229252 31229386 -250964278 + MIR SINE MIR 103 237 -25 541 248 7 15 chr1 31229432 31229569 -250964095 + MIR3 SINE MIR 34 169 -39 2221 92 0 67 chr1 31229583 31229897 -250963767 - AluSx SINE Alu -19 293 1 376 280 76 81 chr1 31231059 31231153 -250962511 - MIR SINE MIR -13 249 156 1519 173 0 12 chr1 31231153 31231402 -250962262 - AluJo SINE Alu -51 261 16 376 280 76 81 chr1 31231402 31231518 -250962146 - MIR SINE MIR -106 156 40 927 243 171 35 chr1 31231651 31231714 -250961950 - MLT1L LTR MaLR -8 607 554 2279 113 0 0 chr1 31231714 31232007 -250961657 - AluSx SINE Alu -19 293 1 927 243 171 35 chr1 31232007 31232317 -250961347 - MLT1L LTR MaLR -61 554 183 1793 194 121 50 chr1 31232345 31232841 -250960823 - MLT1H LTR MaLR -18 531 1 257 309 56 43 chr1 31232841 31233003 -250960661 - MLT1L LTR MaLR -446 169 6 305 95 0 0 chr1 31233544 31233586 -250960078 - THE1A LTR MaLR 0 355 314 1104 62 0 0 chr1 31233586 31233715 -250959949 + AluY SINE Alu 1 129 -182 774 90 0 0 chr1 31233715 31233815 -250959849 - THE1B LTR MaLR -260 104 5 398 238 126 28 chr1 31234144 31234287 -250959377 - MIR SINE MIR -93 169 13 640 289 32 32 chr1 31234447 31234518 -250959146 - L2 LINE L2 -648 2666 2596 2088 123 3 0 chr1 31234518 31234803 -250958861 + AluSx SINE Alu 21 306 -6 640 289 32 32 chr1 31234803 31234984 -250958680 - L2 LINE L2 -717 2597 2414 2292 97 0 0 chr1 31235122 31235434 -250958230 - AluSx SINE Alu 0 312 1 2325 75 7 0 chr1 31235894 31236222 -250957442 + AluSp SINE Alu 1 330 0 449 266 227 20 chr1 31236346 31236549 -250957115 + MIR SINE MIR 6 250 -12 747 133 31 8 chr1 31236625 31236753 -250956911 + FLAM_C SINE Alu 3 133 0 2330 91 0 23 chr1 31236763 31237071 -250956593 + AluSc SINE Alu 1 301 -8 2237 125 6 3 chr1 31237203 31237514 -250956150 - AluSx SINE Alu 0 312 1 2176 102 0 54 chr1 31237579 31237894 -250955770 - AluSq SINE Alu -15 298 1 1631 175 6 60 chr1 31238051 31238385 -250955279 - AluJb SINE Alu 0 312 1 687 187 0 7 chr1 31238385 31238524 -250955140 - L1PA16 LINE L1 -7 6159 6022 447 325 59 0 chr1 31238662 31238831 -250954833 - L2 LINE L2 -212 3060 2882 217 292 15 0 chr1 31239265 31239330 -250954334 - L2 LINE L2 -1 3312 3247 274 198 189 38 chr1 31239415 31239521 -250954143 + MIR SINE MIR 131 252 -10 379 329 100 42 chr1 31239739 31240049 -250953615 + L2 LINE L2 2945 3272 0 721 272 0 35 chr1 31240081 31240309 -250953355 - MIR SINE MIR -13 249 30 32 43 0 0 chr1 31240607 31240653 -250953011 + GC_rich Low_complexity Low_complexity 1 46 0 681 258 35 5 chr1 31242541 31242739 -250950925 + MIR SINE MIR 36 239 -23 272 252 44 124 chr1 31243219 31243395 -250950269 - MIR3 SINE MIR -28 180 30 1752 147 50 4 chr1 31243478 31243757 -250949907 - AluJb SINE Alu -20 292 1 364 260 166 6 chr1 31244229 31244398 -250949266 + MIR SINE MIR 7 202 -60 401 272 95 27 chr1 31245526 31245673 -250947991 + MIR SINE MIR 54 210 -52 252 274 137 33 chr1 31246009 31246067 -250947597 + MIR SINE MIR 60 111 -151 2179 82 3 49 chr1 31246067 31246372 -250947292 - AluSx SINE Alu -21 291 1 252 274 137 33 chr1 31246372 31246466 -250947198 + MIR SINE MIR 111 228 -34 181 329 31 62 chr1 31246743 31246904 -250946760 - L2 LINE L2 -188 3084 2929 398 233 252 0 chr1 31247548 31247651 -250946013 + FLAM_A SINE Alu 1 129 -4 323 255 91 44 chr1 31247927 31248094 -250945570 - MIR SINE MIR -63 145 16 710 266 38 30 chr1 31248222 31248459 -250945205 + MIR SINE MIR 13 251 -11 2248 104 7 0 chr1 31248546 31248833 -250944831 - AluSx SINE Alu -9 303 15 1629 173 40 14 chr1 31248897 31249175 -250944489 + AluJo SINE Alu 1 285 -27 539 78 0 13 chr1 31249175 31249252 -250944412 - AluS SINE Alu -235 77 2 264 263 105 94 chr1 31249281 31249442 -250944222 - L1ME4a LINE L1 0 6121 5963 2278 119 0 16 chr1 31249442 31249760 -250943904 - AluSq SINE Alu 0 313 1 772 150 0 8 chr1 31249762 31249889 -250943775 - AluJo/FLAM SINE Alu -175 127 2 264 263 105 94 chr1 31249889 31250112 -250943552 - L1ME4a LINE L1 -158 5963 5744 829 148 0 0 chr1 31250112 31250240 -250943424 + FLAM_C SINE Alu 3 130 -3 264 263 105 94 chr1 31250240 31250298 -250943366 - L1ME4a LINE L1 -377 5744 5667 2395 76 10 0 chr1 31250298 31250601 -250943063 - AluSp SINE Alu -7 306 1 264 263 105 94 chr1 31250601 31250620 -250943044 - L1ME4a LINE L1 -454 5667 5650 413 255 20 0 chr1 31250620 31250722 -250942942 + L3 LINE CR1 1376 1479 -98 2044 113 0 31 chr1 31250799 31250819 -250942845 - AluSx SINE Alu -8 304 285 237 65 0 0 chr1 31250819 31250850 -250942814 + (ATTG)n Simple_repeat Simple_repeat 2 32 0 2044 113 0 31 chr1 31250850 31251122 -250942542 - AluSx SINE Alu -27 285 21 2286 110 3 10 chr1 31251543 31251715 -250941949 - AluSx SINE Alu -6 306 135 2271 89 3 17 chr1 31251715 31252046 -250941618 - AluSg SINE Alu 0 310 1 2286 110 3 10 chr1 31252046 31252181 -250941483 - AluSx SINE Alu -177 135 1 2303 113 0 3 chr1 31252248 31252550 -250941114 + AluSx SINE Alu 1 301 -11 2465 70 3 16 chr1 31252655 31252970 -250940694 - AluY SINE Alu 0 311 1 610 284 38 38 chr1 31252980 31253193 -250940471 - MIR SINE MIR -14 248 33 2404 72 0 10 chr1 31253193 31253486 -250940178 - AluY SINE Alu -21 290 1 610 284 38 38 chr1 31253486 31253508 -250940156 - MIR SINE MIR -228 34 13 274 277 122 47 chr1 31253523 31253671 -250939993 - MIR3 SINE MIR -36 172 14 2390 93 0 0 chr1 31253745 31254036 -250939628 - AluSg SINE Alu -19 291 1 289 229 174 18 chr1 31254173 31254282 -250939382 + MIR SINE MIR 50 175 -87 500 198 54 0 chr1 31254292 31254403 -250939261 - L2 LINE L2 -39 3274 3158 12138 101 143 33 chr1 31254478 31254593 -250939071 - Tigger1 DNA MER2_type 0 2418 2317 1961 142 27 3 chr1 31254593 31254888 -250938776 + AluJb SINE Alu 1 302 -10 12138 101 143 33 chr1 31254888 31255365 -250938299 - Tigger1 DNA MER2_type -101 2317 1894 2080 149 0 3 chr1 31255365 31255673 -250937991 + AluJb SINE Alu 1 307 -5 948 164 61 0 chr1 31255681 31255846 -250937818 - FAM SINE Alu 0 175 1 12138 101 143 33 chr1 31255846 31256075 -250937589 - Tigger1 DNA MER2_type -530 1888 1685 1723 157 26 42 chr1 31256075 31256388 -250937276 - AluJo SINE Alu -4 308 1 12138 101 143 33 chr1 31256388 31256893 -250936771 - Tigger1 DNA MER2_type -733 1685 1237 966 168 6 12 chr1 31256893 31257060 -250936604 + FRAM SINE Alu 1 166 0 2478 88 0 0 chr1 31257060 31257357 -250936307 + AluSx SINE Alu 1 297 -15 12138 101 143 33 chr1 31257357 31257709 -250935955 - Tigger1 DNA MER2_type -1181 1237 925 2443 93 3 3 chr1 31257709 31258021 -250935643 - AluSx SINE Alu 0 312 1 12138 101 143 33 chr1 31258021 31258058 -250935606 - Tigger1 DNA MER2_type -1493 925 893 1945 155 7 3 chr1 31258058 31258361 -250935303 - AluJo SINE Alu -8 304 1 12138 101 143 33 chr1 31258361 31258594 -250935070 - Tigger1 DNA MER2_type -1525 893 687 1848 149 10 7 chr1 31258594 31258908 -250934756 + AluJb SINE Alu 1 315 0 12138 101 143 33 chr1 31258908 31259104 -250934560 - Tigger1 DNA MER2_type -1731 687 20 251 114 0 0 chr1 31259158 31259202 -250934462 - L2 LINE L2 -336 2977 2934 2345 85 3 3 chr1 31259582 31259876 -250933788 + AluSc SINE Alu 1 294 -15 1654 129 30 0 chr1 31259958 31260190 -250933474 - AluJb SINE Alu -73 239 1 747 262 25 5 chr1 31260221 31260423 -250933241 - MIR SINE MIR -29 233 28 23 0 0 0 chr1 31260582 31260605 -250933059 + AT_rich Low_complexity Low_complexity 1 23 0 1886 150 3 39 chr1 31260676 31260982 -250932682 + AluJo SINE Alu 1 295 -17 322 281 89 62 chr1 31260988 31261212 -250932452 + MIR SINE MIR 5 234 -28 523 256 7 7 chr1 31261448 31261585 -250932079 - MIR SINE MIR -55 207 71 518 299 32 41 chr1 31261670 31261695 -250931969 + MIR SINE MIR 15 39 -223 1439 175 138 20 chr1 31261695 31262049 -250931615 - MLT2C1 LTR ERVL 0 397 2 518 299 32 41 chr1 31262049 31262244 -250931420 + MIR SINE MIR 39 233 -29 2241 78 0 0 chr1 31262296 31262564 -250931100 - AluSq SINE Alu -45 268 1 2085 157 3 0 chr1 31262722 31263028 -250930636 - AluJb SINE Alu -1 311 5 221 222 0 0 chr1 31264063 31264108 -250929556 + MIR3 SINE MIR 115 159 -49 705 285 21 25 chr1 31264131 31264373 -250929291 + MIR SINE MIR 12 252 -10 883 205 118 31 chr1 31264522 31264586 -250929078 - MLT1C LTR MaLR -5 462 405 2399 79 14 0 chr1 31264586 31264878 -250928786 + AluSg SINE Alu 1 296 -14 883 205 118 31 chr1 31264878 31265067 -250928597 - MLT1C LTR MaLR -62 405 187 627 176 206 0 chr1 31265075 31265211 -250928453 - AluJb SINE Alu -23 289 126 3306 92 8 44 chr1 31265212 31265714 -250927950 - MER1A DNA MER1_type 0 529 46 2365 113 0 0 chr1 31265720 31266029 -250927635 + AluSc SINE Alu 1 309 0 688 161 59 0 chr1 31266055 31266173 -250927491 - AluJb SINE Alu -187 125 1 722 149 130 7 chr1 31266175 31266329 -250927335 - MLT1C LTR MaLR -289 178 6 278 232 85 12 chr1 31266345 31266427 -250927237 + MIR SINE MIR 119 206 -56 382 240 0 66 chr1 31266756 31266877 -250926787 + MIR3 SINE MIR 82 194 -14 565 330 19 10 chr1 31267028 31267237 -250926427 - MIR SINE MIR -32 230 20 912 163 7 13 chr1 31267250 31267403 -250926261 - FAM SINE Alu -9 40 1 1064 228 95 26 chr1 31267418 31267765 -250925899 - MLT1C LTR MaLR -3 464 94 256 260 13 26 chr1 31268216 31268293 -250925371 + GA-rich Low_complexity Low_complexity 2 77 0 278 274 51 51 chr1 31268383 31268500 -250925164 - L2 LINE L2 -28 3244 3128 389 333 0 0 chr1 31268500 31268617 -250925047 - L2 LINE L2 0 3272 3156 994 143 0 0 chr1 31268623 31268763 -250924901 - FRAM SINE Alu -29 147 8 478 219 176 48 chr1 31268867 31268992 -250924672 + MIR SINE MIR 48 206 -56 2290 120 3 0 chr1 31268992 31269301 -250924363 + AluSx SINE Alu 1 310 -2 478 219 176 48 chr1 31269301 31269362 -250924302 + MIR SINE MIR 206 258 -4 261 287 139 16 chr1 31269760 31269882 -250923782 + MIR SINE MIR 13 149 -113 2124 121 3 33 chr1 31270031 31270375 -250923289 - AluSx SINE Alu 0 335 1 2104 147 3 0 chr1 31270375 31270681 -250922983 - AluJb SINE Alu -5 307 1 1099 164 16 38 chr1 31271138 31271321 -250922343 + AluJo SINE Alu 1 179 -133 304 306 19 9 chr1 31271432 31271540 -250922124 - MIR SINE MIR -101 161 53 2024 152 14 0 chr1 31271613 31271975 -250921689 - L1MB3 LINE L1 -2 6181 5815 1265 137 15 10 chr1 31271976 31272173 -250921491 - AluJb SINE Alu -15 297 100 2627 165 61 18 chr1 31272180 31272658 -250921006 - L1MB3 LINE L1 -354 5829 5373 2053 158 0 0 chr1 31272658 31272943 -250920721 - AluJb SINE Alu -27 285 1 2627 165 61 18 chr1 31272943 31273092 -250920572 - L1MB3 LINE L1 -810 5373 5179 1831 123 0 25 chr1 31273092 31273376 -250920288 - AluSx SINE Alu -13 299 23 2627 165 61 18 chr1 31273376 31273415 -250920249 - L1MB3 LINE L1 -1004 5179 5143 1104 79 0 0 chr1 31273415 31273554 -250920110 + AluSg SINE Alu 1 139 -171 1958 112 34 17 chr1 31273554 31273848 -250919816 + AluSx SINE Alu 1 299 -13 317 216 0 57 chr1 31273848 31273936 -250919728 - L1MB3 LINE L1 -993 5153 5071 716 179 43 0 chr1 31273987 31274127 -250919537 - L1MB3 LINE L1 -1053 5093 4948 826 323 40 18 chr1 31274226 31274594 -250919070 + L2 LINE L2 2632 3009 -263 726 181 38 127 chr1 31274610 31274805 -250918859 - MLT1A2 LTR MaLR -13 415 195 1943 89 0 0 chr1 31274805 31275064 -250918600 + AluSx SINE Alu 53 311 -1 726 181 38 127 chr1 31275064 31275131 -250918533 - MLT1A2 LTR MaLR -233 195 124 1063 83 17 17 chr1 31275174 31275354 -250918310 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 186 55 164 0 chr1 31275356 31275411 -250918253 + CT-rich Low_complexity Low_complexity 1 64 0 2132 107 0 0 chr1 31275413 31275704 -250917960 - AluSq SINE Alu -22 291 1 1801 157 11 0 chr1 31275904 31276214 -250917450 + AluJb SINE Alu 1 313 0 1998 104 10 7 chr1 31276320 31276609 -250917055 + AluSg SINE Alu 2 291 -19 392 155 56 0 chr1 31276625 31276696 -250916968 - MLT1A2 LTR MaLR -299 75 1 297 289 68 105 chr1 31276696 31276990 -250916674 + L2 LINE L2 3029 3311 -2 400 250 18 18 chr1 31277094 31277206 -250916458 + MIR SINE MIR 48 159 -103 690 294 54 75 chr1 31277229 31277473 -250916191 + HAL1 LINE L1 305 536 -1971 905 92 0 8 chr1 31277473 31277592 -250916072 + FLAM_C SINE Alu 1 118 -15 690 294 54 75 chr1 31277592 31277830 -250915834 + HAL1 LINE L1 536 777 -1730 321 186 0 0 chr1 31277840 31277910 -250915754 + (CA)n Simple_repeat Simple_repeat 2 71 0 2437 267 61 74 chr1 31277913 31278228 -250915436 + HAL1 LINE L1 782 1100 -1407 2401 62 0 3 chr1 31278228 31278532 -250915132 - AluY SINE Alu -8 303 1 2437 267 61 74 chr1 31278532 31278559 -250915105 + HAL1 LINE L1 1100 1126 -1381 1416 183 21 21 chr1 31278559 31278681 -250914983 + AluJo SINE Alu 1 122 -212 2176 99 3 0 chr1 31278681 31278975 -250914689 - AluSp SINE Alu -18 295 1 1416 183 21 21 chr1 31278975 31279186 -250914478 + AluJo SINE Alu 121 334 0 2437 267 61 74 chr1 31279186 31279942 -250913722 + HAL1 LINE L1 1126 1890 -617 2245 61 57 0 chr1 31279942 31280238 -250913426 + AluSp SINE Alu 1 313 0 2397 71 3 0 chr1 31280238 31280548 -250913116 + AluY SINE Alu 1 311 0 2437 267 61 74 chr1 31280548 31280876 -250912788 + HAL1 LINE L1 1884 2194 -309 1024 181 0 0 chr1 31280876 31281036 -250912628 + FAM SINE Alu 1 160 -15 2119 127 0 6 chr1 31281058 31281372 -250912292 - AluSq SINE Alu -1 312 1 440 275 206 13 chr1 31281498 31281731 -250911933 + MLT1J2 LTR MaLR 20 297 -153 718 242 39 35 chr1 31281858 31282089 -250911575 + HAL1 LINE L1 2276 2507 0 1969 138 20 0 chr1 31282089 31282393 -250911271 - AluJb SINE Alu -2 310 1 1560 168 21 7 chr1 31282587 31282873 -250910791 - AluJo SINE Alu -22 290 1 2198 99 3 0 chr1 31283010 31283302 -250910362 - AluSg SINE Alu -17 293 1 1312 251 91 42 chr1 31283302 31283847 -250909817 - L2 LINE L2 -26 3287 2709 515 275 42 36 chr1 31284479 31284627 -250909037 + MIR3 SINE MIR 7 158 -50 438 286 15 61 chr1 31284627 31284823 -250908841 - MER5A DNA MER1_type -1 188 2 515 275 42 36 chr1 31284823 31284867 -250908797 + MIR3 SINE MIR 158 200 -8 592 282 31 31 chr1 31285537 31285732 -250907932 - MIR SINE MIR -20 242 48 1499 178 32 23 chr1 31285807 31285993 -250907671 - AluJb SINE Alu 0 312 120 204 40 0 0 chr1 31285993 31286018 -250907646 + (TTA)n Simple_repeat Simple_repeat 2 26 0 1499 178 32 23 chr1 31286018 31286140 -250907524 - AluJb SINE Alu -192 120 1 2197 86 0 17 chr1 31286145 31286447 -250907217 - AluSc SINE Alu -12 297 1 2572 32 0 6 chr1 31286453 31286766 -250906898 - AluY SINE Alu 0 311 1 203 276 0 122 chr1 31286854 31286897 -250906767 + MIR SINE MIR 38 64 -144 2174 123 0 0 chr1 31286897 31287198 -250906466 - AluSq SINE Alu -12 301 1 203 276 0 122 chr1 31287198 31287252 -250906412 + MIR SINE MIR 64 123 -85 384 230 317 45 chr1 31288226 31288435 -250905229 - MLT1J2 LTR MaLR -21 425 274 2168 114 3 0 chr1 31288435 31288732 -250904932 + AluSx SINE Alu 1 298 -14 384 230 317 45 chr1 31288732 31288809 -250904855 - MLT1J2 LTR MaLR -172 274 61 362 314 36 15 chr1 31288990 31289127 -250904537 - MIR3 SINE MIR -54 154 15 249 280 200 0 chr1 31289412 31289512 -250904152 + MIR3 SINE MIR 77 196 -12 360 325 152 0 chr1 31289582 31289773 -250903891 - L3 LINE CR1 -13 1564 1345 1959 150 3 0 chr1 31289789 31290096 -250903568 - AluJb SINE Alu -4 308 1 341 301 128 20 chr1 31290212 31290252 -250903412 - MIR SINE MIR -18 244 210 2274 88 0 19 chr1 31290252 31290569 -250903095 - AluY SINE Alu 0 311 1 341 301 128 20 chr1 31290569 31290724 -250902940 - MIR SINE MIR -52 210 28 211 387 14 7 chr1 31290848 31290990 -250902674 - L2 LINE L2 -208 3064 2922 1713 131 28 3 chr1 31292339 31292621 -250901043 + AluJo SINE Alu 1 289 -23 232 245 0 0 chr1 31292622 31292671 -250900993 + GA-rich Low_complexity Low_complexity 1 49 0 195 196 43 0 chr1 31294175 31294221 -250899443 - L2 LINE L2 -207 3065 3018 253 315 139 79 chr1 31294412 31294780 -250898884 - L2 LINE L2 -14 3258 2869 530 291 84 24 chr1 31294786 31294999 -250898665 - MIR SINE MIR -14 248 23 1494 151 0 94 chr1 31295354 31295547 -250898117 - AluJo SINE Alu -12 300 149 2102 107 3 13 chr1 31295547 31295857 -250897807 - AluSx SINE Alu -5 307 1 1494 151 0 94 chr1 31295857 31295994 -250897670 - AluJo SINE Alu -163 149 1 344 189 165 6 chr1 31296052 31296172 -250897492 + MIR SINE MIR 105 250 -12 329 296 32 0 chr1 31296322 31296447 -250897217 - L2 LINE L2 -1220 2094 1966 387 233 75 33 chr1 31296531 31296651 -250897013 + MIR3 SINE MIR 45 169 -39 264 229 43 29 chr1 31296674 31296744 -250896920 + MIR SINE MIR 42 112 -96 193 260 20 0 chr1 31296784 31296834 -250896830 + L2 LINE L2 3251 3301 -12 2261 105 0 0 chr1 31296912 31297217 -250896447 + AluSg SINE Alu 1 305 -5 663 214 31 35 chr1 31297845 31298048 -250895616 - MIR SINE MIR -39 223 16 191 279 162 18 chr1 31298280 31298391 -250895273 + MIR SINE MIR 59 185 -77 180 255 21 0 chr1 31298401 31298448 -250895216 + L2 LINE L2 3205 3252 -61 197 135 0 54 chr1 31298489 31298526 -250895138 + MIR SINE MIR 214 248 -14 2239 89 30 0 chr1 31298592 31298895 -250894769 - AluSx SINE Alu 0 312 1 233 273 122 58 chr1 31299203 31299342 -250894322 + MIR3 SINE MIR 33 180 -28 2253 82 7 0 chr1 31299772 31300065 -250893599 + AluSg1 SINE Alu 1 295 -14 255 61 0 0 chr1 31300865 31300898 -250892766 + (TG)n Simple_repeat Simple_repeat 1 33 0 2031 102 7 3 chr1 31300951 31301245 -250892419 - AluSx SINE Alu -17 295 1 217 244 44 67 chr1 31301302 31301344 -250892320 + MIR SINE MIR 105 146 -116 2239 87 13 3 chr1 31301344 31301654 -250892010 + AluSp SINE Alu 1 313 0 217 244 44 67 chr1 31301654 31301701 -250891963 + MIR SINE MIR 146 192 -70 396 0 0 0 chr1 31302124 31302168 -250891496 + (TC)n Simple_repeat Simple_repeat 2 45 0 2159 92 3 0 chr1 31302342 31302681 -250890983 + AluSp SINE Alu 1 340 0 933 140 5 85 chr1 31302687 31302864 -250890800 + FRAM SINE Alu 1 191 -121 1982 113 0 53 chr1 31302864 31303183 -250890481 + AluSx SINE Alu 1 302 -10 2207 108 0 3 chr1 31303191 31303498 -250890166 + AluSq SINE Alu 7 312 -1 933 140 5 85 chr1 31303498 31303511 -250890153 + FRAM SINE Alu 164 176 0 4098 132 37 64 chr1 31303511 31303717 -250889947 + L1MA4A LINE L1 5320 5530 -773 2086 119 0 0 chr1 31303717 31304011 -250889653 - AluSx SINE Alu -18 294 1 4098 132 37 64 chr1 31304011 31304384 -250889280 + L1MA4A LINE L1 5530 5928 -375 1801 103 0 12 chr1 31304384 31304637 -250889027 + AluSx SINE Alu 1 250 -62 4098 132 37 64 chr1 31304637 31304979 -250888685 + L1MA4A LINE L1 5928 6278 -25 1712 146 3 10 chr1 31304985 31305280 -250888384 - AluJb SINE Alu -18 294 2 195 42 0 0 chr1 31305330 31305354 -250888310 + (CA)n Simple_repeat Simple_repeat 1 24 0 2244 63 0 7 chr1 31306014 31306333 -250887331 + AluSc SINE Alu 1 317 0 2462 77 0 0 chr1 31306368 31306679 -250886985 + AluSx SINE Alu 1 311 -1 1552 189 38 0 chr1 31306691 31306982 -250886682 + AluJb SINE Alu 1 302 -10 220 213 0 0 chr1 31306985 31307032 -250886632 - MIR SINE MIR -79 129 83 293 232 95 11 chr1 31307495 31307590 -250886074 - L2 LINE L2 0 3313 3211 2387 91 0 0 chr1 31307592 31307900 -250885764 + AluSg SINE Alu 1 308 -2 448 291 7 26 chr1 31308086 31308237 -250885427 + MIR3 SINE MIR 11 158 -50 1994 134 10 13 chr1 31308412 31308725 -250884939 + AluJb SINE Alu 1 312 0 1113 38 0 0 chr1 31308842 31308974 -250884690 + AluY SINE Alu 1 132 -179 1944 116 7 0 chr1 31308981 31309256 -250884408 - AluSq SINE Alu -36 277 1 2394 74 0 0 chr1 31309274 31309571 -250884093 - AluSx SINE Alu -15 297 1 382 183 37 0 chr1 31309571 31309653 -250884011 + MER69 DNA AcHobo 2439 2523 -3 1604 186 0 23 chr1 31309726 31310032 -250883632 - AluJb SINE Alu -1 311 13 35 0 0 0 chr1 31310044 31310079 -250883585 + AT_rich Low_complexity Low_complexity 1 35 0 772 102 28 0 chr1 31310079 31310187 -250883477 - HY1 scRNA scRNA 0 112 2 643 138 138 0 chr1 31310190 31310306 -250883358 - FLAM_C SINE Alu -1 132 1 356 313 0 0 chr1 31310716 31310812 -250882852 + MIR SINE MIR 53 148 -114 2253 102 0 9 chr1 31311191 31311506 -250882158 - AluSx SINE Alu 0 312 1 473 307 70 14 chr1 31311703 31311918 -250881746 + L2 LINE L2 2863 3089 -183 1493 80 0 20 chr1 31312553 31312753 -250880911 + AluSg/x SINE Alu 105 300 -10 204 175 25 0 chr1 31312756 31312796 -250880868 + MIR SINE MIR 84 124 -84 245 298 0 9 chr1 31313193 31313307 -250880357 + (CA)n Simple_repeat Simple_repeat 2 114 0 450 0 0 0 chr1 31313385 31313435 -250880229 + (CA)n Simple_repeat Simple_repeat 2 51 0 206 236 28 28 chr1 31313758 31313830 -250879834 - MIR SINE MIR -56 206 135 187 261 0 43 chr1 31314167 31314213 -250879451 + L2 LINE L2 3136 3179 -93 889 248 13 18 chr1 31314341 31314567 -250879097 - MIR SINE MIR -1 261 37 232 239 120 33 chr1 31314612 31314704 -250878960 + MIR3 SINE MIR 109 208 0 239 347 11 11 chr1 31314704 31314799 -250878865 + L3 LINE CR1 1367 1461 -116 306 273 220 31 chr1 31314929 31315151 -250878513 - MIR SINE MIR -6 256 3 232 219 31 62 chr1 31316185 31316313 -250877351 + (TCTCTG)n Simple_repeat Simple_repeat 2 125 0 2522 49 0 0 chr1 31316972 31317279 -250876385 - AluY SINE Alu -4 307 1 334 303 10 0 chr1 31317413 31317512 -250876152 + MIR SINE MIR 41 140 -68 2142 105 0 0 chr1 31318351 31318690 -250874974 - AluSx SINE Alu 0 339 1 279 213 93 0 chr1 31318741 31318816 -250874848 + MIR3 SINE MIR 95 176 -32 654 238 136 37 chr1 31318974 31319188 -250874476 - MIR SINE MIR 0 262 28 218 220 76 6 chr1 31319483 31319546 -250874118 + MIR SINE MIR 85 140 -68 185 333 45 0 chr1 31319698 31319764 -250873900 - MIR SINE MIR -119 143 75 313 226 17 144 chr1 31319825 31320006 -250873658 + MIR SINE MIR 49 206 -56 2218 95 3 16 chr1 31320159 31320474 -250873190 + AluSq SINE Alu 1 311 -2 274 307 30 10 chr1 31320475 31320576 -250873088 - MIR SINE MIR -7 255 153 747 224 22 58 chr1 31320629 31320792 -250872872 - MIR SINE MIR -1 261 105 1830 113 84 0 chr1 31320792 31321090 -250872574 + AluSq SINE Alu 1 321 0 747 224 22 58 chr1 31321090 31321147 -250872517 - MIR SINE MIR -157 105 47 2040 120 7 0 chr1 31321147 31321439 -250872225 - AluSx SINE Alu -3 309 16 1776 145 39 0 chr1 31321440 31321723 -250871941 - AluJb SINE Alu -18 294 1 506 221 103 29 chr1 31321765 31321901 -250871763 + L2 LINE L2 3115 3260 -12 181 286 219 9 chr1 31322404 31322509 -250871155 + MIR SINE MIR 28 154 -108 454 261 36 29 chr1 31322523 31322661 -250871003 + L2 LINE L2 3174 3312 -1 218 320 56 23 chr1 31322972 31323142 -250870522 + MIR3 SINE MIR 15 192 -69 408 244 65 16 chr1 31323354 31323477 -250870187 + MIR SINE MIR 48 176 -86 430 321 85 49 chr1 31323622 31323846 -250869818 - MIR SINE MIR -12 250 19 2022 115 10 0 chr1 31323852 31324140 -250869524 - AluSx SINE Alu -21 291 1 788 233 83 31 chr1 31324367 31324595 -250869069 + MIR SINE MIR 23 262 0 202 263 40 61 chr1 31324788 31324887 -250868777 - L2 LINE L2 -35 3237 3141 188 370 14 0 chr1 31324918 31324991 -250868673 - L2 LINE L2 -270 3002 2929 185 317 33 0 chr1 31325561 31325621 -250868043 + MIR SINE MIR 42 103 -105 1640 164 4 4 chr1 31325621 31325895 -250867769 + AluJb SINE Alu 3 276 -36 195 69 0 0 chr1 31325897 31325926 -250867738 + (TAGG)n Simple_repeat Simple_repeat 4 32 0 * 659 158 0 15 chr1 31325920 31326053 -250867611 + G-rich Low_complexity Low_complexity 2 132 0 403 291 119 45 chr1 31326272 31326560 -250867104 - L2 LINE L2 -179 3093 2788 360 351 48 0 chr1 31326702 31326910 -250866754 + MIR SINE MIR 31 248 -14 267 143 54 18 chr1 31327507 31327563 -250866101 + MIR SINE MIR 86 143 -65 365 267 78 0 chr1 31328066 31328156 -250865508 + MIR3 SINE MIR 60 156 -52 699 304 22 13 chr1 31328176 31328403 -250865261 + MIR SINE MIR 6 234 -28 212 200 40 20 chr1 31328520 31328570 -250865094 - L2 LINE L2 0 3313 3263 198 261 21 120 chr1 31328598 31328634 -250865030 + MIR SINE MIR 67 105 -157 2075 137 0 0 chr1 31328634 31328940 -250864724 - AluSx SINE Alu -6 306 1 198 261 21 120 chr1 31328940 31329045 -250864619 + MIR SINE MIR 105 194 -68 1333 253 40 53 chr1 31329131 31329278 -250864386 + L2 LINE L2 2909 3056 -257 2319 86 0 0 chr1 31329278 31329581 -250864083 - AluY SINE Alu -8 303 1 2236 92 0 0 chr1 31329582 31329875 -250863789 - AluSc SINE Alu -16 293 1 2202 110 0 0 chr1 31329877 31330186 -250863478 - AluSx SINE Alu -3 309 1 1333 253 40 53 chr1 31330186 31330429 -250863235 + L2 LINE L2 3057 3299 -14 403 221 90 55 chr1 31331120 31331265 -250862399 + MIR SINE MIR 29 171 -67 760 280 34 5 chr1 31331273 31331480 -250862184 + MIR SINE MIR 2 214 -48 696 280 0 69 chr1 31331556 31331665 -250861999 + MIR SINE MIR 20 106 -156 2092 120 16 3 chr1 31331665 31331973 -250861691 - AluSx SINE Alu 0 312 1 696 280 0 69 chr1 31331973 31332095 -250861569 + MIR SINE MIR 106 235 -27 266 310 110 10 chr1 31332096 31332196 -250861468 - MIR SINE MIR -62 146 37 2188 113 0 0 chr1 31332207 31332517 -250861147 - AluSg SINE Alu 0 310 1 22 0 0 0 chr1 31332521 31332543 -250861121 + AT_rich Low_complexity Low_complexity 1 22 0 1488 168 30 60 chr1 31332827 31332968 -250860696 + MLT1A2 LTR MaLR 34 178 -196 1990 109 0 14 chr1 31332968 31333104 -250860560 + AluSx SINE Alu 1 137 -175 2286 74 10 3 chr1 31333104 31333402 -250860262 + AluY SINE Alu 1 300 -11 1990 109 0 14 chr1 31333402 31333559 -250860105 + AluSx SINE Alu 137 290 -22 2123 112 3 0 chr1 31333567 31333870 -250859794 + AluSx SINE Alu 1 304 -8 1488 168 30 60 chr1 31333870 31334053 -250859611 + MLT1A2 LTR MaLR 185 357 -17 232 344 16 0 chr1 31334062 31334126 -250859538 - MIR SINE MIR -94 114 50 2160 109 0 3 chr1 31334158 31334471 -250859193 - AluSx SINE Alu 0 312 1 2214 79 26 13 chr1 31335118 31335423 -250858241 - AluY SINE Alu -2 309 1 2022 108 3 7 chr1 31335423 31335719 -250857945 - AluSq SINE Alu -18 295 1 717 102 19 28 chr1 31335719 31335827 -250857837 - AluJo/FLAM SINE Alu -182 130 24 976 166 23 6 chr1 31335967 31336142 -250857522 - AluJ SINE Alu -15 297 120 828 151 32 0 chr1 31336190 31336316 -250857348 - AluJ SINE Alu -176 136 7 370 309 59 13 chr1 31336320 31336472 -250857192 + MIR SINE MIR 103 261 -1 2009 122 0 0 chr1 31336472 31336768 -250856896 + AluSx SINE Alu 1 296 -16 2173 94 0 0 chr1 31336772 31337082 -250856582 - AluSg SINE Alu 0 310 1 342 169 78 0 chr1 31337084 31337161 -250856503 + L1ME4a LINE L1 5706 5788 -333 1771 122 41 24 chr1 31337233 31337527 -250856137 + AluSx SINE Alu 1 299 -13 393 200 0 0 chr1 31337567 31337642 -250856022 + MER116 DNA Mariner 1 75 -5 873 212 0 18 chr1 31337655 31337820 -250855844 + AluJo SINE Alu 121 282 -30 216 86 0 0 chr1 31337826 31337861 -250855803 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1608 167 14 17 chr1 31337866 31338153 -250855511 + AluJo SINE Alu 1 286 -26 206 61 0 30 chr1 31338153 31338186 -250855478 + (TAGA)n Simple_repeat Simple_repeat 4 35 0 1286 151 8 29 chr1 31338216 31338454 -250855210 + AluJb SINE Alu 64 296 -16 302 276 52 17 chr1 31338454 31338570 -250855094 + L1ME4a LINE L1 5948 6067 -54 380 233 8 90 chr1 31340073 31340113 -250853551 + MIR SINE MIR 30 72 -136 2068 92 7 17 chr1 31340113 31340408 -250853256 + AluSp SINE Alu 1 292 -21 380 233 8 90 chr1 31340408 31340500 -250853164 + MIR SINE MIR 72 151 -57 562 170 200 77 chr1 31340501 31340736 -250852928 - L2 LINE L2 0 3313 3050 553 175 16 71 chr1 31340884 31340966 -250852698 - MIR SINE MIR 0 262 188 2064 119 3 3 chr1 31340966 31341269 -250852395 - AluSq SINE Alu -10 303 1 553 175 16 71 chr1 31341269 31341312 -250852352 - MIR SINE MIR -74 188 144 746 189 0 8 chr1 31341333 31341465 -250852199 - FRAM SINE Alu -18 158 28 2114 70 32 0 chr1 31341519 31341825 -250851839 + AluSc SINE Alu 1 309 0 250 299 0 15 chr1 31341825 31341892 -250851772 - MIR SINE MIR -174 88 23 208 196 41 10 chr1 31341980 31342045 -250851619 + MIR SINE MIR 100 166 -96 384 226 121 16 chr1 31342369 31342493 -250851171 - MIR3 SINE MIR -11 197 61 21 0 0 0 chr1 31342790 31342811 -250850853 + GC_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr1 31342872 31342907 -250850757 + GC_rich Low_complexity Low_complexity 1 35 0 204 306 37 0 chr1 31343076 31343210 -250850454 + (CGG)n Simple_repeat Simple_repeat 2 140 0 22 0 0 0 chr1 31343240 31343262 -250850402 + GC_rich Low_complexity Low_complexity 1 22 0 233 115 0 58 chr1 31344052 31344104 -250849560 + (T)n Simple_repeat Simple_repeat 1 49 0 256 269 67 75 chr1 31344403 31344537 -250849127 + MIR SINE MIR 118 250 -12 2051 104 7 3 chr1 31344707 31344994 -250848670 + AluSx SINE Alu 2 289 -23 1946 125 7 7 chr1 31345148 31345443 -250848221 - AluJo SINE Alu -17 295 1 276 30 0 0 chr1 31345601 31345634 -250848030 + (TG)n Simple_repeat Simple_repeat 2 34 0 2032 122 0 3 chr1 31345635 31345931 -250847733 - AluSc SINE Alu -14 295 1 1408 178 3 53 chr1 31345944 31346247 -250847417 - AluJo SINE Alu -24 288 1 1383 103 0 10 chr1 31346510 31346704 -250846960 - AluSc SINE Alu -117 192 1 683 190 0 70 chr1 31346983 31347125 -250846539 + FLAM_C SINE Alu 2 133 0 1960 123 34 3 chr1 31347814 31348107 -250845557 - AluSx SINE Alu -10 302 1 37 23 0 0 chr1 31348155 31348199 -250845465 + AT_rich Low_complexity Low_complexity 1 44 0 1668 147 32 3 chr1 31348976 31349283 -250844381 - AluJb SINE Alu 0 312 1 25 0 0 0 chr1 31349283 31349308 -250844356 + AT_rich Low_complexity Low_complexity 1 25 0 642 218 0 0 chr1 31349310 31349420 -250844244 - FLAM_A SINE Alu -32 110 1 216 0 0 0 chr1 31350291 31350315 -250843349 + (TA)n Simple_repeat Simple_repeat 1 24 0 2209 103 0 0 chr1 31350318 31350620 -250843044 - AluSg SINE Alu -8 302 1 23 0 0 0 chr1 31350620 31350643 -250843021 + AT_rich Low_complexity Low_complexity 1 23 0 1220 188 52 44 chr1 31350811 31350979 -250842685 - AluJo SINE Alu -38 274 102 2180 101 0 3 chr1 31350979 31351277 -250842387 - AluSg SINE Alu -11 299 3 1220 188 52 44 chr1 31351277 31351380 -250842284 - AluJo SINE Alu -210 102 1 2114 89 62 0 chr1 31351454 31351746 -250841918 - AluSx SINE Alu -1 311 2 1873 216 62 43 chr1 31352207 31352600 -250841064 + MLT1F LTR MaLR 1 408 -134 2043 117 3 3 chr1 31352600 31352899 -250840765 + AluSx SINE Alu 1 299 -13 1873 216 62 43 chr1 31352899 31353037 -250840627 + MLT1F LTR MaLR 408 542 0 1146 277 82 47 chr1 31353043 31353156 -250840508 - L2 LINE L2 0 3313 3205 1608 158 3 58 chr1 31353156 31353317 -250840347 - AluJo SINE Alu -19 293 156 2266 84 3 0 chr1 31353317 31353615 -250840049 - AluSg SINE Alu -11 299 1 1608 158 3 58 chr1 31353615 31353763 -250839901 - AluJo SINE Alu -156 156 1 1146 277 82 47 chr1 31353763 31354228 -250839436 - L2 LINE L2 -108 3205 2715 1094 153 39 20 chr1 31354297 31354500 -250839164 + AluJo SINE Alu 14 220 -92 304 48 0 177 chr1 31354500 31354562 -250839102 + AluSq/x SINE Alu 86 133 -170 * 370 98 0 0 chr1 31354558 31354609 -250839055 - MSTA LTR MaLR -377 51 1 256 207 240 41 chr1 31354609 31354730 -250838934 + MIR SINE MIR 118 262 0 * 319 257 250 20 chr1 31354694 31354842 -250838822 - MIR SINE MIR -33 229 48 277 296 211 0 chr1 31354926 31355078 -250838586 + MIR SINE MIR 73 256 -6 181 318 106 0 chr1 31355873 31355939 -250837725 - MIR SINE MIR -6 256 184 209 231 39 19 chr1 31355993 31356045 -250837619 + CT-rich Low_complexity Low_complexity 4 56 0 610 257 33 70 chr1 31357255 31357496 -250836168 + MIR SINE MIR 31 262 0 2398 50 0 34 chr1 31357560 31357882 -250835782 - AluY SINE Alu 0 311 1 2249 73 3 10 chr1 31357884 31358185 -250835479 - AluSp SINE Alu -13 300 2 1508 160 3 21 chr1 31358214 31358496 -250835168 - L1MB8 LINE L1 0 6178 5902 1684 155 6 50 chr1 31358503 31358820 -250834844 - AluJo SINE Alu -9 303 1 2184 101 0 0 chr1 31358840 31359137 -250834527 - AluSx SINE Alu -15 297 1 450 167 83 0 chr1 31359361 31359469 -250834195 - MER69 DNA AcHobo -53 2473 2357 1185 197 5 0 chr1 31359469 31359687 -250833977 + AluJb SINE Alu 1 219 -93 605 205 57 52 chr1 31359739 31359883 -250833781 - MER69 DNA AcHobo -154 2372 2225 2272 73 0 20 chr1 31359883 31360186 -250833478 - AluY SINE Alu -14 297 1 605 205 57 52 chr1 31360186 31360251 -250833413 - MER69 DNA AcHobo -301 2225 2162 395 114 86 0 chr1 31360251 31360321 -250833343 - MER69 DNA AcHobo -2450 76 1 2132 121 3 0 chr1 31360468 31360774 -250832890 - AluSx SINE Alu -5 307 1 226 348 67 0 chr1 31361684 31361773 -250831891 - MIR SINE MIR -114 148 54 972 197 99 5 chr1 31361908 31362121 -250831543 - L1MD3 LINE L1 -231 7764 7532 4474 199 89 93 chr1 31362174 31362721 -250830943 - L1MC3 LINE L1 -31 7754 7206 319 275 11 11 chr1 31362721 31362812 -250830852 - MLT1F1 LTR MaLR -442 125 35 4474 199 89 93 chr1 31362812 31363019 -250830645 - L1MC3 LINE L1 -579 7206 7000 351 0 0 0 chr1 31363019 31363058 -250830606 + (TG)n Simple_repeat Simple_repeat 2 40 0 4474 199 89 93 chr1 31363058 31363200 -250830464 - L1MC3 LINE L1 -785 7000 6859 1341 192 72 10 chr1 31363200 31363492 -250830172 + AluJb SINE Alu 1 310 -2 1539 155 7 24 chr1 31363501 31363791 -250829873 + AluSx SINE Alu 1 285 -27 270 0 0 0 chr1 31363791 31363821 -250829843 + (CA)n Simple_repeat Simple_repeat 2 31 0 4474 199 89 93 chr1 31363821 31363991 -250829673 - L1MC3 LINE L1 -933 6852 6683 2137 112 0 0 chr1 31363991 31364287 -250829377 + AluSc SINE Alu 1 296 -13 4474 199 89 93 chr1 31364287 31365741 -250827923 - L1MC3 LINE L1 -1102 6683 5158 2149 102 0 3 chr1 31365741 31366045 -250827619 - AluSg SINE Alu -7 303 1 4474 199 89 93 chr1 31366045 31366886 -250826778 - L1MC3 LINE L1 -2627 5158 4315 1394 169 104 0 chr1 31366888 31367148 -250826516 - AluJb SINE Alu -15 297 11 2675 183 8 40 chr1 31367158 31367780 -250825884 - L1MC3 LINE L1 -1823 4323 3722 1962 98 22 0 chr1 31367780 31368095 -250825569 - AluSq SINE Alu 0 321 1 642 232 43 82 chr1 31368157 31368390 -250825274 - MLT1H1 LTR MaLR -5 550 327 2317 71 0 0 chr1 31368723 31369019 -250824645 + AluSx SINE Alu 2 297 -15 1453 172 34 40 chr1 31369448 31369745 -250823919 + AluJb SINE Alu 1 295 -17 2312 74 7 0 chr1 31369966 31370275 -250823389 + AluSp SINE Alu 1 311 -2 253 219 171 0 chr1 31370316 31370421 -250823243 - L1ME4a LINE L1 -34 6087 5965 4780 175 28 16 chr1 31370452 31371299 -250822365 - MER21B LTR ERV1 -6 857 1 6210 99 36 20 chr1 31371575 31371723 -250821941 + L1MA1 LINE L1 5298 5442 -860 2039 113 20 7 chr1 31371723 31372024 -250821640 + AluSx SINE Alu 1 305 -7 6210 99 36 20 chr1 31372024 31372867 -250820797 + L1MA1 LINE L1 5442 6301 -1 2035 95 18 0 chr1 31372887 31373170 -250820494 - AluSx SINE Alu -7 305 18 1807 157 17 7 chr1 31373177 31373464 -250820200 + AluJb SINE Alu 19 308 -4 628 126 0 0 chr1 31374551 31374638 -250819026 - AluSg/x SINE Alu -15 294 208 901 73 0 0 chr1 31374650 31374759 -250818905 - AluY SINE Alu -202 109 1 2006 93 30 0 chr1 31375488 31375803 -250817861 + AluSc SINE Alu 1 323 0 1769 146 43 0 chr1 31375897 31376177 -250817487 + AluSx SINE Alu 1 292 -20 2236 56 49 26 chr1 31376584 31376888 -250816776 + AluY SINE Alu 1 311 0 2273 92 0 7 chr1 31377020 31377312 -250816352 + AluSg SINE Alu 1 290 -20 22 0 0 0 chr1 31377492 31377514 -250816150 + AT_rich Low_complexity Low_complexity 1 22 0 1656 182 18 3 chr1 31377514 31377800 -250815864 + AluJo SINE Alu 1 290 -22 649 236 48 125 chr1 31377847 31377940 -250815724 - L1ME4a LINE L1 -201 5969 5870 198 0 0 0 chr1 31377940 31377962 -250815702 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2224 111 0 0 chr1 31377965 31378254 -250815410 - AluSg SINE Alu -21 289 1 649 236 48 125 chr1 31378254 31378571 -250815093 - L1ME4a LINE L1 -302 5868 5587 288 279 72 27 chr1 31378614 31378725 -250814939 - MIR SINE MIR -126 136 21 2162 106 7 3 chr1 31379194 31379487 -250814177 - AluSq SINE Alu -19 294 1 315 0 0 0 chr1 31379714 31379749 -250813915 + (CA)n Simple_repeat Simple_repeat 2 36 0 1866 136 0 79 chr1 31379924 31380254 -250813410 + AluJb SINE Alu 1 304 -8 2240 98 0 13 chr1 31380598 31380905 -250812759 + AluSg SINE Alu 1 303 -7 1295 79 18 0 chr1 31381217 31381381 -250812283 - AluSq SINE Alu -146 167 1 981 197 10 56 chr1 31381381 31381685 -250811979 - L1MC5 LINE L1 -325 7636 7347 300 200 0 0 chr1 31381879 31381934 -250811730 + AluJ/FRAM SINE Alu 228 282 -20 180 125 0 0 chr1 31381937 31381969 -250811695 + (CATG)n Simple_repeat Simple_repeat 2 33 0 1010 202 34 0 chr1 31382157 31382335 -250811329 - MER5A DNA MER1_type -4 185 2 231 277 294 0 chr1 31382356 31382475 -250811189 - MER5B DNA MER1_type -24 154 1 2275 104 0 13 chr1 31383689 31383996 -250809668 - AluSc SINE Alu -6 303 1 271 272 100 56 chr1 31385061 31385241 -250808423 - L2 LINE L2 -6 3307 3120 2016 150 0 0 chr1 31385766 31386053 -250807611 - AluSx SINE Alu -21 291 5 29 21 0 21 chr1 31386314 31386341 -250807323 + AT_rich Low_complexity Low_complexity 1 28 -18 890 138 0 8 chr1 31386341 31386464 -250807200 - FLAM_C SINE Alu -7 126 5 29 21 0 21 chr1 31386464 31386483 -250807181 + AT_rich Low_complexity Low_complexity 28 46 0 1473 173 4 0 chr1 31386579 31386810 -250806854 + AluJb SINE Alu 61 292 -20 2124 119 3 25 chr1 31386882 31387201 -250806463 + AluJb SINE Alu 1 312 0 2201 128 3 0 chr1 31387565 31387870 -250805794 - AluSx SINE Alu -6 306 1 807 119 0 48 chr1 31388196 31388322 -250805342 - AluSq/x SINE Alu -180 133 14 1878 128 6 42 chr1 31388341 31388653 -250805011 - AluJb SINE Alu 0 312 12 1464 147 67 70 chr1 31388799 31389099 -250804565 + AluJb SINE Alu 1 299 -13 2405 88 0 3 chr1 31389104 31389409 -250804255 + AluSq SINE Alu 1 304 -9 262 299 133 45 chr1 31389818 31389942 -250803722 + MIR SINE MIR 22 151 -92 562 103 0 0 chr1 31390391 31390414 -250803250 + MADE1 DNA Mariner 2 24 -56 2353 82 0 10 chr1 31390414 31390717 -250802947 - AluSq SINE Alu -13 300 1 562 103 0 0 chr1 31390717 31390771 -250802893 + MADE1 DNA Mariner 23 79 -1 1103 157 32 19 chr1 31390771 31390987 -250802677 - L1MB7 LINE L1 -26 6158 5940 444 19 0 0 chr1 31391698 31391751 -250801913 + (TG)n Simple_repeat Simple_repeat 1 53 0 206 368 0 15 chr1 31391824 31391892 -250801772 + MIR SINE MIR 19 85 -123 2068 109 14 17 chr1 31392517 31392811 -250800853 + AluSx SINE Alu 1 293 -19 1113 103 0 39 chr1 31392811 31393006 -250800658 + AluSg/x SINE Alu 134 322 0 205 343 172 54 chr1 31393185 31393482 -250800182 + L2 LINE L2 2937 3268 -4 2330 92 0 10 chr1 31394260 31394566 -250799098 + AluSq SINE Alu 1 303 -10 1262 259 150 30 chr1 31394776 31395327 -250798337 - L2 LINE L2 0 3313 2661 1588 86 5 5 chr1 31395484 31395693 -250797971 + AluSp SINE Alu 95 303 -10 607 153 34 17 chr1 31396366 31396484 -250797180 + AluSp SINE Alu 2 121 -192 1132 46 0 0 chr1 31396633 31396763 -250796901 + AluY SINE Alu 5 134 -177 2367 84 0 7 chr1 31396763 31397072 -250796592 + AluY SINE Alu 1 307 -4 2227 104 3 0 chr1 31398006 31398295 -250795369 - AluSx SINE Alu -22 290 1 2370 88 7 3 chr1 31398324 31398631 -250795033 - AluSx SINE Alu -2 310 3 1548 136 19 108 chr1 31399037 31399361 -250794303 - AluJb SINE Alu -17 295 1 1722 172 0 17 chr1 31399737 31400028 -250793636 - AluJo SINE Alu -18 294 9 1826 178 0 16 chr1 31400518 31400827 -250792837 - AluJo SINE Alu -8 304 1 895 324 147 19 chr1 31400858 31401342 -250792322 - L3 LINE CR1 -11 1566 1021 239 302 115 22 chr1 31401431 31401570 -250792094 - L3 LINE CR1 -558 1019 868 415 326 112 25 chr1 31401616 31401892 -250791772 - L2 LINE L2 -699 2615 2316 2385 79 7 0 chr1 31401922 31402225 -250791439 - AluSx SINE Alu -7 305 1 1084 98 0 0 chr1 31402231 31402364 -250791300 - AluSq/x SINE Alu -180 133 1 2207 56 95 0 chr1 31402819 31403103 -250790561 + AluY SINE Alu 1 311 0 1887 169 3 0 chr1 31403492 31403788 -250789876 - AluJo SINE Alu -15 297 1 2073 142 0 0 chr1 31403992 31404287 -250789377 - AluSx SINE Alu -16 296 2 532 150 0 0 chr1 31405413 31405493 -250788171 - Ricksha DNA DNA 0 2854 2775 * 10692 149 36 14 chr1 31405426 31407195 -250786469 + Ricksha DNA DNA 91 1898 -1348 1718 150 0 18 chr1 31407212 31407492 -250786172 + AluJb SINE Alu 28 302 -10 4517 114 16 10 chr1 31407697 31408387 -250785277 + L1P LINE L1 4075 4768 -1378 286 270 36 44 chr1 31408430 31408584 -250785080 - MIR SINE MIR -65 143 26 1684 98 47 4 chr1 31409489 31409744 -250783920 + L1MA2 LINE L1 6039 6304 0 201 211 0 0 chr1 31412337 31412375 -250781289 - L2 LINE L2 -20 3293 3256 713 225 7 0 chr1 31412427 31412569 -250781095 - MIR SINE MIR -23 239 97 304 287 93 9 chr1 31413435 31413543 -250780121 + MIR SINE MIR 31 147 -61 1441 90 0 0 chr1 31413769 31413947 -250779717 + AluSq SINE Alu 1 178 -135 302 0 0 26 chr1 31414362 31414401 -250779263 + (TG)n Simple_repeat Simple_repeat 1 38 0 735 256 92 0 chr1 31415262 31415457 -250778207 + MIR SINE MIR 40 252 -10 274 313 40 20 chr1 31415879 31415978 -250777686 + L2 LINE L2 3203 3303 -10 207 188 0 0 chr1 31415987 31416035 -250777629 + (TGGA)n Simple_repeat Simple_repeat 1 48 0 23 78 0 0 chr1 31416577 31416628 -250777036 + AT_rich Low_complexity Low_complexity 1 51 0 2447 68 7 10 chr1 31417534 31417841 -250775823 + AluSx SINE Alu 1 306 -6 255 273 50 30 chr1 31417847 31417946 -250775718 + MIR3 SINE MIR 55 155 -53 1510 152 5 0 chr1 31419962 31420186 -250773478 - AluSx SINE Alu -87 225 1 543 292 6 0 chr1 31420248 31420416 -250773248 - L1MC4 LINE L1 -1 8041 7873 2231 112 0 0 chr1 31420456 31420752 -250772912 - AluSq SINE Alu -17 296 1 1438 98 0 29 chr1 31421037 31421241 -250772423 - Charlie3 DNA MER1_type -4 2706 2509 264 211 122 33 chr1 31422220 31422310 -250771354 + MIR SINE MIR 144 241 -21 2555 14 0 0 chr1 31424685 31424963 -250768701 - AluYa5 SINE Alu 0 311 34 330 87 0 0 chr1 31426822 31426868 -250766796 + (GA)n Simple_repeat Simple_repeat 1 46 0 332 22 0 22 chr1 31427849 31427895 -250765769 + (TG)n Simple_repeat Simple_repeat 2 46 0 187 309 144 0 chr1 31428280 31428377 -250765287 - MIR SINE MIR -6 256 146 2314 73 0 20 chr1 31428490 31428791 -250764873 + AluSx SINE Alu 1 295 -17 506 303 62 0 chr1 31428793 31428971 -250764693 - MIR SINE MIR -71 191 3 2525 140 3 5 chr1 31429595 31429980 -250763684 - Tigger2a DNA MER2_type -49 385 2 287 267 193 27 chr1 31430196 31430346 -250763318 - MIR SINE MIR -62 200 26 395 316 29 35 chr1 31430470 31430641 -250763023 - MIR3 SINE MIR -9 199 30 243 0 0 0 chr1 31430684 31430711 -250762953 + (TG)n Simple_repeat Simple_repeat 2 28 0 221 224 0 0 chr1 31431315 31431364 -250762300 + (TG)n Simple_repeat Simple_repeat 2 50 0 1755 100 116 4 chr1 31432006 31432265 -250761399 - AluSx SINE Alu -12 300 13 23 0 0 0 chr1 31432382 31432405 -250761259 + AT_rich Low_complexity Low_complexity 1 23 0 222 254 34 0 chr1 31432429 31432488 -250761176 + (CATA)n Simple_repeat Simple_repeat 1 61 0 344 363 22 7 chr1 31432819 31432954 -250760710 + L2 LINE L2 2954 3090 -182 256 228 89 44 chr1 31433349 31433493 -250760171 + MIR SINE MIR 34 192 -64 385 248 9 44 chr1 31434069 31434151 -250759513 + MIR3 SINE MIR 76 154 -54 1621 194 3 3 chr1 31434151 31434445 -250759219 - AluJo SINE Alu -18 294 1 385 248 9 44 chr1 31434445 31434475 -250759189 + MIR3 SINE MIR 154 184 -24 411 21 0 0 chr1 31434776 31434824 -250758840 + (CA)n Simple_repeat Simple_repeat 2 49 0 319 157 43 0 chr1 31435377 31435444 -250758220 - AluJ/FLAM SINE Alu -245 57 1 597 183 44 15 chr1 31435533 31435670 -250757994 - MIR SINE MIR -2 260 120 751 168 0 0 chr1 31436570 31436677 -250756987 + FLAM_A SINE Alu 3 109 -33 2180 113 0 0 chr1 31436759 31437051 -250756613 + AluSx SINE Alu 1 292 -20 2160 96 11 0 chr1 31437557 31437839 -250755825 - AluSq SINE Alu -28 285 1 943 112 0 8 chr1 31439038 31439172 -250754492 - FLAM_C SINE Alu 0 133 1 3163 9 0 0 chr1 31439637 31439986 -250753678 + L1HS LINE L1 5803 6151 -4 25 0 0 0 chr1 31439986 31440011 -250753653 + AT_rich Low_complexity Low_complexity 1 25 0 714 101 10 0 chr1 31440011 31440110 -250753554 - HY3 scRNA scRNA -1 100 1 528 239 117 119 chr1 31440169 31440554 -250753110 + L2 LINE L2 2915 3298 -15 2304 98 3 0 chr1 31440556 31440852 -250752812 + AluSx SINE Alu 1 297 -15 1995 164 0 3 chr1 31440861 31441160 -250752504 + AluJb SINE Alu 1 298 -14 515 217 52 9 chr1 31441273 31441388 -250752276 - L2 LINE L2 0 3313 3194 1927 195 121 104 chr1 31441453 31442308 -250751356 + LTR28 LTR ERV1 1 1020 0 449 211 78 0 chr1 31442318 31442408 -250751256 - MER5A DNA MER1_type -84 105 9 1890 126 23 7 chr1 31442793 31443103 -250750561 - Ricksha DNA DNA -8 3243 2929 486 117 65 13 chr1 31443101 31443178 -250750486 - Ricksha DNA DNA -379 2475 2395 * 3119 26 3 0 chr1 31443579 31443925 -250749739 + L1PA4 LINE L1 5806 6152 -3 195 23 68 45 chr1 31443932 31443976 -250749688 + A-rich Low_complexity Low_complexity 3 47 0 4526 128 27 13 chr1 31443976 31444721 -250748943 - Ricksha DNA DNA -445 2806 1965 298 282 65 24 chr1 31445253 31445377 -250748287 - MER5B DNA MER1_type 0 178 50 616 113 0 10 chr1 31445779 31445876 -250747788 + L1MB8 LINE L1 6083 6178 0 218 342 44 9 chr1 31445907 31446021 -250747643 - MIR SINE MIR -108 154 37 2336 82 3 3 chr1 31446532 31446824 -250746840 - AluY SINE Alu -19 292 1 2441 84 7 0 chr1 31446938 31447248 -250746416 - AluSx SINE Alu 0 312 1 2026 139 150 11 chr1 31448076 31448443 -250745221 + MSTA LTR MaLR 10 427 -1 1882 121 4 0 chr1 31449432 31449689 -250743975 + AluSq SINE Alu 1 258 -55 2135 99 0 3 chr1 31450341 31450623 -250743041 - AluSg1 SINE Alu -6 303 23 31 26 0 0 chr1 31450790 31450828 -250742836 + AT_rich Low_complexity Low_complexity 1 38 0 1261 209 67 28 chr1 31450940 31451222 -250742442 - AluJo SINE Alu -19 293 1 318 278 0 37 chr1 31451333 31451441 -250742223 - MIR SINE MIR -1 261 158 6173 162 80 66 chr1 31451442 31451857 -250741807 + Charlie1a DNA MER1_type 1 409 -2352 2390 86 0 0 chr1 31451857 31452159 -250741505 - AluY SINE Alu -7 304 3 6173 162 80 66 chr1 31452159 31452720 -250740944 + Charlie1a DNA MER1_type 409 961 -1800 2328 84 0 7 chr1 31452720 31453017 -250740647 + AluSc SINE Alu 1 295 -14 6173 162 80 66 chr1 31453017 31453277 -250740387 + Charlie1a DNA MER1_type 961 1216 -1545 2158 131 0 0 chr1 31453277 31453574 -250740090 - AluSq SINE Alu -16 297 1 6173 162 80 66 chr1 31453574 31453685 -250739979 + Charlie1a DNA MER1_type 1216 1324 -1437 2354 101 3 0 chr1 31453685 31453991 -250739673 + AluSp SINE Alu 1 307 -6 6173 162 80 66 chr1 31453991 31454075 -250739589 + Charlie1a DNA MER1_type 1324 1455 0 649 313 85 0 chr1 31454083 31454307 -250739357 + MIR SINE MIR 2 244 -18 2637 55 7 0 chr1 31454334 31454642 -250739022 + AluY SINE Alu 1 310 -1 24 32 0 0 chr1 31454891 31454922 -250738742 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr1 31455522 31455546 -250738118 + AT_rich Low_complexity Low_complexity 1 24 0 922 152 88 0 chr1 31455670 31455841 -250737823 - AluSx SINE Alu -126 186 1 33 0 0 0 chr1 31456033 31456066 -250737598 + AT_rich Low_complexity Low_complexity 1 33 0 2140 128 0 3 chr1 31456497 31456794 -250736870 + AluSq SINE Alu 1 296 -17 1810 168 3 20 chr1 31456808 31457105 -250736559 + AluJb SINE Alu 1 292 -20 2179 103 7 3 chr1 31457507 31457807 -250735857 - AluY SINE Alu -10 301 1 249 57 0 0 chr1 31457967 31458002 -250735662 + (TC)n Simple_repeat Simple_repeat 2 36 0 2147 102 0 43 chr1 31458217 31458541 -250735123 + AluSx SINE Alu 1 310 -2 2212 100 3 52 chr1 31459101 31459430 -250734234 - AluSp SINE Alu 0 313 1 225 158 53 0 chr1 31459635 31459673 -250733991 - Tigger3(Golem) DNA MER2_type -3 3026 2987 1099 154 6 0 chr1 31459673 31459842 -250733822 - AluJo SINE Alu -142 170 1 878 212 7 0 chr1 31459977 31460128 -250733536 + FRAM SINE Alu 1 152 -14 24 53 0 0 chr1 31460128 31460166 -250733498 + AT_rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr1 31460312 31460336 -250733328 + AT_rich Low_complexity Low_complexity 1 24 0 2305 112 0 0 chr1 31460358 31460671 -250732993 - AluSq SINE Alu 0 313 1 337 277 50 57 chr1 31460698 31460857 -250732807 + HAL1b LINE L1 1191 1348 0 1658 185 0 20 chr1 31461033 31461330 -250732334 - AluJo SINE Alu -21 291 1 267 117 34 6 chr1 31461460 31461506 -250732158 + MIR SINE MIR 101 201 -7 1634 164 173 21 chr1 31461692 31462119 -250731545 + LTR54B LTR ERV1 1 492 -6 1508 183 56 14 chr1 31462336 31462620 -250731044 - AluJb SINE Alu -16 296 1 355 273 312 7 chr1 31462644 31462798 -250730866 - MIR SINE MIR -1 261 61 228 220 0 68 chr1 31462821 31462880 -250730784 - L2 LINE L2 -2 3270 3216 1481 205 70 62 chr1 31462925 31463408 -250730256 + HAL1 LINE L1 1354 1840 -667 2556 62 0 0 chr1 31464410 31464716 -250728948 - AluY SINE Alu -5 306 1 21 0 0 0 chr1 31464845 31464866 -250728798 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 31465250 31465272 -250728392 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr1 31465394 31465414 -250728250 + (A)n Simple_repeat Simple_repeat 1 20 0 1744 164 3 11 chr1 31465420 31465707 -250727957 + AluJb SINE Alu 1 285 -27 762 115 0 0 chr1 31465707 31465803 -250727861 + AluSq SINE Alu 100 195 -118 236 200 0 0 chr1 31465803 31465848 -250727816 - Alu SINE Alu -136 166 122 185 343 0 0 chr1 31465850 31465923 -250727741 - MIR3 SINE MIR -25 183 111 757 224 132 26 chr1 31467194 31467422 -250726242 + MIR SINE MIR 8 259 -3 1693 113 0 17 chr1 31467524 31467764 -250725900 - AluSg/x SINE Alu -4 308 73 2281 87 6 34 chr1 31467764 31468084 -250725580 - AluSq SINE Alu 0 313 1 262 286 0 0 chr1 31468099 31468155 -250725509 + L2 LINE L2 3217 3272 0 1984 136 7 13 chr1 31468807 31469115 -250724549 - AluJb SINE Alu -5 307 2 206 308 0 77 chr1 31469140 31469231 -250724433 - MIR SINE MIR -82 126 43 1006 182 62 6 chr1 31469266 31469442 -250724222 - MER5A DNA MER1_type -2 187 2 425 333 49 19 chr1 31469451 31469613 -250724051 - MER5A DNA MER1_type 0 189 23 1264 187 0 18 chr1 31469753 31469972 -250723692 - AluJb SINE Alu -97 215 1 416 286 130 0 chr1 31469975 31470160 -250723504 - L1M4 LINE L1 -2727 3419 3211 249 57 0 0 chr1 31470185 31470220 -250723444 + (TATG)n Simple_repeat Simple_repeat 2 36 0 2153 107 0 14 chr1 31470220 31470511 -250723153 - AluSq SINE Alu -26 287 1 253 122 0 20 chr1 31470511 31470560 -250723104 - L1MA7 LINE L1 -14 6277 6230 * 278 138 0 17 chr1 31470549 31470607 -250723057 - L1M4 LINE L1 -2918 3228 3172 2419 64 17 3 chr1 31470636 31470934 -250722730 - AluSp SINE Alu -11 302 1 238 225 81 20 chr1 31470971 31471067 -250722597 - MIR SINE MIR -82 126 74 478 238 0 10 chr1 31471084 31471185 -250722479 + LTR28 LTR ERV1 921 1020 0 1890 126 23 7 chr1 31471794 31472104 -250721560 - Ricksha DNA DNA -8 3246 2932 486 117 65 13 chr1 31472102 31472179 -250721485 - Ricksha DNA DNA -379 2475 2395 * 3068 29 3 3 chr1 31472580 31472927 -250720737 + L1PA4 LINE L1 5806 6152 -3 190 26 79 26 chr1 31472934 31472972 -250720692 + A-rich Low_complexity Low_complexity 3 42 0 629 89 0 0 chr1 31473073 31473152 -250720512 - AluS SINE Alu -233 80 2 2007 121 7 0 chr1 31473162 31473497 -250720167 - AluSx SINE Alu 0 337 1 2005 102 4 18 chr1 31473585 31473860 -250719804 - AluY SINE Alu -40 271 1 1849 123 43 0 chr1 31473981 31474257 -250719407 - AluSx SINE Alu -19 293 6 430 333 49 14 chr1 31474284 31474428 -250719236 - L2 LINE L2 -5 3267 3119 496 82 0 0 chr1 31474467 31474528 -250719136 - AluSx SINE Alu -16 293 233 1338 134 16 0 chr1 31474528 31474714 -250718950 - AluSx SINE Alu -123 189 1 647 202 60 44 chr1 31474742 31474925 -250718739 - L1MC5 LINE L1 -44 7917 7732 363 368 37 37 chr1 31475430 31475593 -250718071 - L2 LINE L2 -6 3266 3104 302 180 83 36 chr1 31475740 31475846 -250717818 + MIR SINE MIR 42 146 -62 2074 142 0 3 chr1 31476410 31476706 -250716958 + AluSx SINE Alu 1 295 -17 280 304 36 18 chr1 31476720 31476832 -250716832 - MIR3 SINE MIR -28 180 67 784 170 67 0 chr1 31476955 31477090 -250716574 + AluJb SINE Alu 158 301 -11 2165 125 0 10 chr1 31477147 31477460 -250716204 - AluSx SINE Alu -2 310 1 1709 92 40 7 chr1 31477892 31478207 -250715457 + AluSg1 SINE Alu 1 324 0 346 205 134 27 chr1 31479158 31479270 -250714394 + L1ME4a LINE L1 5995 6118 -3 790 189 12 27 chr1 31479721 31479904 -250713760 + L1MC4 LINE L1 6433 6620 -1396 204 275 217 8 chr1 31529995 31530115 -250663549 - L2 LINE L2 -803 2511 2367 288 278 86 56 chr1 31530252 31530414 -250663250 - MIR SINE MIR -9 253 87 2131 108 0 17 chr1 31530514 31530810 -250662854 - AluSg SINE Alu -13 297 7 340 198 66 22 chr1 31530843 31530934 -250662730 - MER103 DNA DNA -19 147 53 2192 91 0 0 chr1 31531161 31531436 -250662228 - AluSx SINE Alu -37 275 1 415 317 62 65 chr1 31531733 31532055 -250661609 - L2 LINE L2 -51 3221 2901 1820 132 64 0 chr1 31532383 31532679 -250660985 - AluSx SINE Alu 0 313 1 1676 163 71 0 chr1 31532681 31532963 -250660701 - AluJb SINE Alu -8 304 3 358 83 0 0 chr1 31533830 31533878 -250659786 + Alu SINE Alu 1 48 -253 306 311 34 68 chr1 31534258 31534435 -250659229 + MIR3 SINE MIR 10 180 -28 1343 105 0 0 chr1 31534943 31535115 -250658549 + AluSg SINE Alu 1 172 -138 548 260 125 10 chr1 31535170 31535378 -250658286 - MIR SINE MIR 0 262 31 825 181 104 14 chr1 31536001 31536241 -250657423 - MER46C DNA MER2_type -1 337 17 226 303 26 26 chr1 31536323 31536399 -250657265 + L2 LINE L2 3127 3202 -70 2042 128 0 36 chr1 31536461 31536767 -250656897 + AluSx SINE Alu 1 295 -17 472 273 209 27 chr1 31537003 31537223 -250656441 + MIR SINE MIR 2 261 -1 180 273 136 0 chr1 31537340 31537406 -250656258 - L2 LINE L2 -8 3264 3190 988 196 18 0 chr1 31537410 31537578 -250656086 + FAM SINE Alu 4 174 -1 187 327 71 53 chr1 31537707 31537820 -250655844 - L2 LINE L2 -215 3057 2943 199 248 210 37 chr1 31537930 31538144 -250655520 - L2 LINE L2 -803 2511 2261 311 272 86 56 chr1 31538187 31538349 -250655315 - MIR SINE MIR -9 253 87 2306 93 0 17 chr1 31538448 31538750 -250654914 - AluSg SINE Alu -13 297 1 425 236 55 16 chr1 31538777 31538904 -250654760 - MER103 DNA DNA -19 147 16 270 270 80 30 chr1 31541055 31541155 -250652509 - MIR SINE MIR -56 152 48 1916 121 7 0 chr1 31541559 31541831 -250651833 + AluSx SINE Alu 33 306 -6 435 260 0 10 chr1 31541843 31541943 -250651721 - MIR SINE MIR -71 137 39 * 520 268 118 0 chr1 31541938 31542140 -250651524 + MIR SINE MIR 29 256 -6 2332 97 6 6 chr1 31542194 31542505 -250651159 + AluSq SINE Alu 1 311 -2 789 126 54 0 chr1 31542505 31542616 -250651048 + AluSq SINE Alu 134 250 -63 186 133 0 0 chr1 31542616 31542646 -250651018 + (A)n Simple_repeat Simple_repeat 1 30 0 1297 210 32 4 chr1 31542679 31542931 -250650733 - AluJb SINE Alu -19 293 35 1010 208 102 53 chr1 31543101 31543423 -250650241 - L2 LINE L2 -1 3312 2975 2073 86 32 7 chr1 31543535 31543836 -250649828 + AluSp SINE Alu 2 309 0 539 143 0 22 chr1 31543882 31543973 -250649691 + AluJo SINE Alu 29 117 -195 185 166 69 0 chr1 31543975 31544120 -250649544 + (TA)n Simple_repeat Simple_repeat 2 156 0 903 198 18 0 chr1 31544120 31544287 -250649377 + AluJo SINE Alu 124 293 -19 2273 112 3 0 chr1 31544290 31544602 -250649062 + AluSq SINE Alu 1 313 0 428 331 18 25 chr1 31544605 31544768 -250648896 + MIR SINE MIR 50 211 -51 1153 111 0 0 chr1 31544864 31545047 -250648617 + AluSg/x SINE Alu 130 312 0 1034 139 12 0 chr1 31545098 31545263 -250648401 + FRAM SINE Alu 1 162 -14 417 240 130 7 chr1 31545524 31545670 -250647994 + L1ME4a LINE L1 5731 5894 -227 185 0 40 0 chr1 31545928 31545953 -250647711 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1869 118 7 61 chr1 31545955 31546116 -250647548 - AluSx SINE Alu -30 282 143 2385 92 0 0 chr1 31546116 31546420 -250647244 - AluSq SINE Alu -9 304 1 1869 118 7 61 chr1 31546420 31546555 -250647109 - AluSx SINE Alu -169 143 2 436 239 60 26 chr1 31546731 31546848 -250646816 + MIR SINE MIR 21 141 -121 2152 117 3 0 chr1 31547016 31547314 -250646350 - AluSx SINE Alu -13 299 1 856 219 82 26 chr1 31547341 31547574 -250646090 + MIR SINE MIR 1 246 -16 2159 193 64 41 chr1 31547749 31547781 -250645883 - L1ME2 LINE L1 -10 6154 6124 1709 164 4 7 chr1 31547781 31547927 -250645737 - AluJo SINE Alu -31 281 135 2185 104 0 26 chr1 31547927 31548235 -250645429 - AluSg SINE Alu -10 300 1 1709 164 4 7 chr1 31548235 31548369 -250645295 - AluJo SINE Alu -177 135 2 2159 193 64 41 chr1 31548369 31548583 -250645081 - L1ME2 LINE L1 -40 6124 5916 2104 124 0 10 chr1 31548583 31548881 -250644783 - AluSq SINE Alu -14 299 5 2159 193 64 41 chr1 31548881 31549091 -250644573 - L1ME2 LINE L1 -248 5916 5681 2063 124 7 10 chr1 31549091 31549398 -250644266 - AluSx SINE Alu -6 306 1 2159 193 64 41 chr1 31549398 31549474 -250644190 - L1ME2 LINE L1 -483 5681 5608 629 98 0 24 chr1 31549788 31549905 -250643759 - AluSp/q SINE Alu 0 318 204 2263 120 3 0 chr1 31549917 31550226 -250643438 - AluSg SINE Alu 0 310 1 587 270 114 23 chr1 31550352 31550615 -250643049 + LTR28 LTR ERV1 734 1020 0 449 211 78 0 chr1 31550625 31550715 -250642949 - MER5A DNA MER1_type -84 105 9 1890 126 23 7 chr1 31551099 31551409 -250642255 - Ricksha DNA DNA -8 3246 2932 486 117 65 13 chr1 31551407 31551484 -250642180 - Ricksha DNA DNA -379 2475 2395 * 3119 26 3 0 chr1 31551885 31552231 -250641433 + L1PA4 LINE L1 5806 6152 -3 195 23 68 45 chr1 31552238 31552282 -250641382 + A-rich Low_complexity Low_complexity 3 47 0 1455 116 40 33 chr1 31552282 31552585 -250641079 - Ricksha DNA DNA -445 2806 2415 1399 204 0 15 chr1 31552722 31552982 -250640682 - AluJo SINE Alu -56 256 1 416 286 130 0 chr1 31552985 31553170 -250640494 - L1M4 LINE L1 -2727 3419 3211 282 29 0 0 chr1 31553195 31553230 -250640434 + (TATG)n Simple_repeat Simple_repeat 2 36 0 2061 105 18 14 chr1 31553230 31553516 -250640148 - AluSq SINE Alu -26 287 1 253 122 0 20 chr1 31553516 31553565 -250640099 - L1MA7 LINE L1 -14 6277 6230 * 278 138 0 17 chr1 31553554 31553612 -250640052 - L1M4 LINE L1 -2918 3228 3172 2481 60 13 0 chr1 31553641 31553939 -250639725 - AluSp SINE Alu -11 302 1 281 266 120 63 chr1 31553976 31554134 -250639530 - MIR3 SINE MIR -82 126 10 294 163 0 0 chr1 31554170 31554219 -250639445 - MIR SINE MIR -2 260 212 298 282 65 24 chr1 31554832 31554956 -250638708 - MER5B DNA MER1_type 0 178 50 616 113 0 10 chr1 31555358 31555455 -250638209 + L1MB8 LINE L1 6083 6178 0 218 342 44 9 chr1 31555486 31555600 -250638064 - MIR SINE MIR -108 154 37 2336 82 3 3 chr1 31556111 31556403 -250637261 - AluY SINE Alu -19 292 1 2382 88 7 0 chr1 31556517 31556823 -250636841 - AluSx SINE Alu -4 308 1 347 120 0 0 chr1 31557198 31557248 -250636416 + Alu SINE Alu 245 294 -6 592 218 23 45 chr1 31557571 31557704 -250635960 - MER20 DNA MER1_type -89 130 1 2575 59 0 0 chr1 31558888 31559194 -250634470 - AluY SINE Alu -5 306 1 21 0 0 0 chr1 31559323 31559344 -250634320 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 31559728 31559750 -250633914 + AT_rich Low_complexity Low_complexity 1 22 0 225 0 0 0 chr1 31559872 31559897 -250633767 + (A)n Simple_repeat Simple_repeat 1 25 0 1744 164 3 11 chr1 31559903 31560190 -250633474 + AluJb SINE Alu 1 285 -27 1487 126 0 0 chr1 31560190 31560396 -250633268 + AluSg/x SINE Alu 97 303 -7 2913 6 0 0 chr1 31561002 31561340 -250632324 + AluYa5 SINE Alu 1 338 0 1947 98 77 18 chr1 31561352 31561638 -250632026 + AluSg SINE Alu 4 306 -4 2356 47 7 0 chr1 31561639 31561972 -250631692 + AluY SINE Alu 1 335 0 706 122 10 0 chr1 31562100 31562198 -250631466 - AluSg SINE Alu -209 101 3 2355 36 47 0 chr1 31562503 31562782 -250630882 - AluY SINE Alu -19 292 1 425 333 49 19 chr1 31562990 31563152 -250630512 + MER5A DNA MER1_type 23 189 0 1006 182 62 6 chr1 31563161 31563337 -250630327 + MER5A DNA MER1_type 2 187 -2 206 308 0 77 chr1 31563372 31563463 -250630201 + MIR SINE MIR 43 126 -82 1993 136 7 13 chr1 31563488 31563797 -250629867 + AluJb SINE Alu 2 308 -4 21 36 0 0 chr1 31564289 31564317 -250629347 + AT_rich Low_complexity Low_complexity 1 28 0 216 271 187 0 chr1 31565531 31565638 -250628026 + MIR SINE MIR 66 192 -70 364 253 95 0 chr1 31565878 31565973 -250627691 - L2 LINE L2 -2 3311 3208 306 241 112 9 chr1 31566116 31566232 -250627432 + MIR SINE MIR 50 177 -85 1530 84 0 110 chr1 31566435 31566635 -250627029 + L1MA8 LINE L1 6046 6210 -81 2378 93 0 16 chr1 31566635 31566948 -250626716 - AluSg SINE Alu -1 309 2 1530 84 0 110 chr1 31566948 31567020 -250626644 + L1MA8 LINE L1 6210 6288 -3 792 197 95 20 chr1 31567515 31567662 -250626002 - AluJb SINE Alu -153 159 2 355 273 312 7 chr1 31567687 31567841 -250625823 - MIR SINE MIR -1 261 61 228 220 0 68 chr1 31567864 31567923 -250625741 - L2 LINE L2 -2 3270 3216 1568 206 78 57 chr1 31567968 31568479 -250625185 + HAL1 LINE L1 1354 1875 -632 2008 124 28 0 chr1 31568505 31568788 -250624876 - AluSx SINE Alu -21 291 1 33 0 0 0 chr1 31568980 31569013 -250624651 + AT_rich Low_complexity Low_complexity 1 33 0 2140 128 0 3 chr1 31569444 31569741 -250623923 + AluSq SINE Alu 1 296 -17 1770 175 3 20 chr1 31569755 31570052 -250623612 + AluJb SINE Alu 1 292 -20 2289 87 7 0 chr1 31570454 31570753 -250622911 - AluY SINE Alu -10 301 1 838 211 29 5 chr1 31570895 31571099 -250622565 - L1MA7 LINE L1 -4 6287 6079 380 350 169 17 chr1 31571473 31571833 -250621831 + L2 LINE L2 2822 3236 -36 32 67 0 0 chr1 31572093 31572153 -250621511 + AT_rich Low_complexity Low_complexity 1 60 0 1640 163 9 77 chr1 31572661 31572986 -250620678 - AluJo SINE Alu -9 303 1 330 274 66 19 chr1 31573636 31573742 -250619922 + MIR SINE MIR 57 167 -95 863 218 20 5 chr1 31574059 31574256 -250619408 + MER46C DNA MER2_type 92 291 -47 2225 116 0 0 chr1 31574258 31574561 -250619103 - AluSx SINE Alu -9 303 1 751 168 0 0 chr1 31574643 31574750 -250618914 - FLAM_A SINE Alu -33 109 3 596 210 57 13 chr1 31575630 31575787 -250617877 + MIR SINE MIR 97 260 -2 2351 92 0 0 chr1 31575876 31576171 -250617493 + AluSg SINE Alu 1 295 -15 2135 99 0 3 chr1 31576974 31577256 -250616408 - AluSg1 SINE Alu -6 303 23 31 26 0 0 chr1 31577423 31577461 -250616203 + AT_rich Low_complexity Low_complexity 1 38 0 1354 199 68 25 chr1 31577573 31577854 -250615810 - AluJo SINE Alu -19 293 1 318 278 0 37 chr1 31577965 31578073 -250615591 - MIR SINE MIR -1 261 158 5463 169 91 47 chr1 31578074 31578489 -250615175 + Charlie1a DNA MER1_type 1 396 -2365 2434 80 0 0 chr1 31578489 31578791 -250614873 - AluY SINE Alu -7 304 3 5463 169 91 47 chr1 31578791 31579352 -250614312 + Charlie1a DNA MER1_type 396 1046 -1715 2386 84 0 3 chr1 31579352 31579649 -250614015 + AluSg SINE Alu 1 296 -14 5463 169 91 47 chr1 31579649 31579909 -250613755 + Charlie1a DNA MER1_type 1046 1293 -162 1339 145 0 0 chr1 31579909 31580102 -250613562 - AluSq SINE Alu -16 297 105 680 153 5 117 chr1 31580416 31580527 -250613137 + Charlie1a DNA MER1_type 1282 1363 -1398 2308 104 3 3 chr1 31580527 31580834 -250612830 + AluSp SINE Alu 1 307 -6 680 153 5 117 chr1 31580834 31580918 -250612746 + Charlie1a DNA MER1_type 1363 1455 0 649 313 85 0 chr1 31580926 31581150 -250612514 + MIR SINE MIR 2 244 -18 2272 103 0 3 chr1 31581177 31581469 -250612195 + AluSc SINE Alu 1 291 -18 2256 67 3 7 chr1 31581474 31581799 -250611865 + AluSg1 SINE Alu 1 324 0 346 205 134 27 chr1 31582750 31582862 -250610802 + L1ME4a LINE L1 5995 6118 -3 869 199 69 28 chr1 31583313 31583563 -250610101 + L1MC4 LINE L1 6433 6679 -1316 1021 150 43 5 chr1 31583566 31583753 -250609911 + L1MC4 LINE L1 6888 7081 -961 842 161 0 115 chr1 31583765 31583939 -250609725 + AluJb SINE Alu 137 290 -22 2378 81 7 0 chr1 31583946 31584243 -250609421 + AluY SINE Alu 13 311 0 24 32 0 0 chr1 31584492 31584523 -250609141 + AT_rich Low_complexity Low_complexity 1 31 0 24 32 0 0 chr1 31585128 31585159 -250608505 + AT_rich Low_complexity Low_complexity 1 31 0 2034 109 0 0 chr1 31585833 31586100 -250607564 + AluSx SINE Alu 1 267 -45 1848 164 0 7 chr1 31586334 31586626 -250607038 + AluJo SINE Alu 1 290 -22 207 219 16 0 chr1 31586666 31586713 -250606951 + MIR SINE MIR 107 158 -50 21 0 0 0 chr1 31587156 31587177 -250606487 + AT_rich Low_complexity Low_complexity 1 21 0 298 295 137 22 chr1 31587858 31587997 -250605667 - MIR SINE MIR -74 188 34 2237 78 3 3 chr1 31588103 31588409 -250605255 - AluY SINE Alu 0 306 1 1808 185 3 10 chr1 31588414 31588728 -250604936 - AluJb SINE Alu 0 312 1 181 361 0 14 chr1 31588862 31588934 -250604730 - MIR SINE MIR -8 254 184 25 31 0 0 chr1 31590435 31590467 -250603197 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr1 31590924 31590947 -250602717 + AT_rich Low_complexity Low_complexity 1 23 0 1945 145 36 7 chr1 31592541 31592844 -250600820 + AluJb SINE Alu 1 312 0 2521 73 0 0 chr1 31592986 31593288 -250600376 + AluSg SINE Alu 1 302 -8 1795 122 0 4 chr1 31593519 31593773 -250599891 - AluSq SINE Alu -11 302 50 242 54 0 0 chr1 31593880 31593917 -250599747 + Alu SINE Alu 260 296 -3 2259 108 3 0 chr1 31594181 31594488 -250599176 - AluSx SINE Alu -4 308 1 2279 105 3 7 chr1 31597204 31597510 -250596154 - AluSx SINE Alu -7 305 1 1414 164 0 4 chr1 31597692 31597917 -250595747 - AluJb SINE Alu -88 224 1 232 229 0 29 chr1 31598210 31598280 -250595384 - L1ME4a LINE L1 -6 6115 6048 2491 84 0 0 chr1 31598329 31598637 -250595027 - AluSc SINE Alu -1 308 1 2482 69 10 0 chr1 31599003 31599306 -250594358 - AluY SINE Alu -5 306 1 2287 86 7 0 chr1 31599436 31599726 -250593938 - AluSp SINE Alu -21 292 1 2380 99 0 3 chr1 31600099 31600412 -250593252 - AluSx SINE Alu 0 312 1 672 238 0 0 chr1 31600894 31601020 -250592644 + FLAM_A SINE Alu 1 126 -7 371 254 77 15 chr1 31601140 31601270 -250592394 + MIR SINE MIR 119 256 -6 406 291 215 53 chr1 31601433 31601828 -250591836 - L2 LINE L2 -3 3269 2811 195 129 0 0 chr1 31601962 31601993 -250591671 + (GGAA)n Simple_repeat Simple_repeat 2 32 0 1872 142 8 0 chr1 31602047 31602314 -250591350 + AluSx SINE Alu 1 269 -43 2274 101 3 0 chr1 31602534 31602830 -250590834 + AluSp SINE Alu 1 297 -16 216 184 0 0 chr1 31603055 31603093 -250590571 + L2 LINE L2 3268 3305 -8 2423 76 20 0 chr1 31604156 31604457 -250589207 - AluSp SINE Alu -6 307 1 6525 104 31 54 chr1 31604617 31605690 -250587974 - L1PA13 LINE L1 0 6163 5103 2168 109 0 0 chr1 31605690 31605974 -250587690 + AluSg SINE Alu 1 284 -26 6525 104 31 54 chr1 31605974 31606305 -250587359 - L1PA13 LINE L1 -1060 5103 4766 2087 143 3 10 chr1 31606330 31606644 -250587020 - AluSx SINE Alu 0 312 1 251 61 0 0 chr1 31606644 31606677 -250586987 - L1PA13 LINE L1 -1371 4775 4743 * 261 177 51 38 chr1 31606657 31606736 -250586928 - L1PA13 LINE L1 -1676 4470 4391 2206 147 30 0 chr1 31606878 31607211 -250586453 + MER2 DNA MER2_type 1 343 -1 1797 155 0 4 chr1 31607574 31607852 -250585812 + AluJo SINE Alu 22 298 -14 516 179 0 12 chr1 31610173 31610257 -250583407 + FRAM/FAM SINE Alu 1 75 -101 2465 55 0 3 chr1 31610272 31610563 -250583101 - AluY SINE Alu -21 290 1 505 283 133 6 chr1 31610632 31610798 -250582866 + MIR SINE MIR 2 188 -74 519 86 0 75 chr1 31610801 31610894 -250582770 - Alu SINE Alu -5 306 221 305 224 0 0 chr1 31611884 31611942 -250581722 - MIR3 SINE MIR 0 208 151 2300 85 7 26 chr1 31612388 31612551 -250581113 - AluSx SINE Alu -11 301 145 2651 46 3 0 chr1 31612551 31612856 -250580808 - AluY SINE Alu -5 306 1 2300 85 7 26 chr1 31612856 31612999 -250580665 - AluSx SINE Alu -167 145 1 2187 115 10 0 chr1 31613097 31613401 -250580263 + AluSp SINE Alu 1 307 -6 435 260 0 10 chr1 31613413 31613513 -250580151 - MIR SINE MIR -71 137 39 * 520 268 118 0 chr1 31613508 31613710 -250579954 + MIR SINE MIR 29 256 -6 2332 97 6 6 chr1 31613764 31614075 -250579589 + AluSq SINE Alu 1 311 -2 1325 101 0 0 chr1 31614075 31614244 -250579420 + AluSg/x SINE Alu 132 300 -10 2269 102 3 0 chr1 31614340 31614643 -250579021 - AluSp SINE Alu -9 304 1 1987 117 4 4 chr1 31614739 31615052 -250578612 - AluSx SINE Alu 0 313 1 2366 85 3 0 chr1 31615111 31615406 -250578258 + AluSp SINE Alu 1 296 -17 2004 138 3 0 chr1 31615946 31616235 -250577429 + AluSx SINE Alu 1 290 -22 1756 148 0 65 chr1 31616247 31616571 -250577093 + AluJb SINE Alu 1 303 -9 193 374 10 20 chr1 31616836 31616935 -250576729 + MIR SINE MIR 38 135 -73 2317 101 0 0 chr1 31617090 31617386 -250576278 + AluSx SINE Alu 11 306 -6 2245 78 11 0 chr1 31617570 31617874 -250575790 + AluY SINE Alu 1 307 0 2393 97 0 0 chr1 31617892 31618191 -250575473 + AluSg SINE Alu 1 299 -11 816 176 0 34 chr1 31618348 31618496 -250575168 - FLAM_C SINE Alu 0 143 1 419 256 207 10 chr1 31618846 31619049 -250574615 + MIR SINE MIR 20 262 0 421 335 64 11 chr1 31619147 31619335 -250574329 + MIR3 SINE MIR 7 204 -4 442 296 6 52 chr1 31619778 31619950 -250573714 + MIR SINE MIR 8 171 -91 2161 114 20 0 chr1 31620556 31620855 -250572809 + AluSq SINE Alu 1 305 -8 244 304 109 0 chr1 31620856 31620948 -250572716 + MIR SINE MIR 59 160 -102 2311 119 0 0 chr1 31621305 31621617 -250572047 + AluSx SINE Alu 1 312 0 2253 102 10 16 chr1 31622345 31622649 -250571015 - AluSx SINE Alu -10 302 1 2343 71 14 3 chr1 31624306 31624600 -250569064 - AluSq SINE Alu -16 297 1 30 45 0 0 chr1 31627911 31627955 -250565709 + GC_rich Low_complexity Low_complexity 1 44 0 26 98 0 0 chr1 31630113 31630195 -250563469 + GC_rich Low_complexity Low_complexity 1 82 0 21 71 0 0 chr1 31631082 31631124 -250562540 + GC_rich Low_complexity Low_complexity 1 42 0 343 214 62 0 chr1 31632204 31632316 -250561348 + L2 LINE L2 3124 3242 -30 387 207 37 0 chr1 31632421 31632503 -250561161 + MIR SINE MIR 107 191 -71 1878 134 40 4 chr1 31632515 31632791 -250560873 + AluJo SINE Alu 1 286 -26 2180 115 7 10 chr1 31632803 31632937 -250560727 + AluSx SINE Alu 1 134 -178 2574 66 0 3 chr1 31632937 31633239 -250560425 + AluY SINE Alu 1 301 -10 2180 115 7 10 chr1 31633239 31633409 -250560255 + AluSx SINE Alu 134 304 -8 832 69 0 0 chr1 31633524 31633625 -250560039 + AluSg/x SINE Alu 198 298 -14 188 271 177 10 chr1 31633802 31633898 -250559766 - MIR SINE MIR -74 188 77 307 306 63 0 chr1 31634659 31634770 -250558894 - MIR SINE MIR -117 145 28 219 295 36 0 chr1 31635141 31635234 -250558430 - MIR SINE MIR -108 100 47 2102 110 10 35 chr1 31635243 31635553 -250558111 - AluSx SINE Alu -8 304 3 2227 117 7 0 chr1 31635558 31635857 -250557807 - AluSx SINE Alu -11 301 1 832 165 0 0 chr1 31635865 31635998 -250557666 - AluSp/q SINE Alu -18 295 163 384 93 0 0 chr1 31636001 31636055 -250557609 - Alu SINE Alu -244 56 3 4359 111 66 75 chr1 31636430 31637826 -250555838 - pTR5 LTR ERV1 0 2438 742 1759 161 49 3 chr1 31637986 31638272 -250555392 - AluJb SINE Alu -13 299 1 730 176 0 22 chr1 31638817 31638971 -250554693 + FLAM_C SINE Alu 1 157 -357 216 0 0 0 chr1 31638971 31638995 -250554669 + (GGGA)n Simple_repeat Simple_repeat 4 27 0 2243 106 10 13 chr1 31638995 31639307 -250554357 + AluSx SINE Alu 2 312 0 730 176 0 22 chr1 31639307 31639334 -250554330 + FLAM_C SINE Alu 155 514 0 640 161 50 0 chr1 31639336 31639432 -250554232 + GA-rich Low_complexity Low_complexity 3 112 -59 2614 58 3 3 chr1 31639432 31639742 -250553922 + AluSg SINE Alu 1 310 0 640 161 50 0 chr1 31639742 31639806 -250553858 + GA-rich Low_complexity Low_complexity 112 171 0 201 74 0 0 chr1 31639843 31639870 -250553794 + (GGGA)n Simple_repeat Simple_repeat 2 28 0 231 284 74 21 chr1 31641603 31641698 -250551966 - MIR3 SINE MIR -96 112 13 451 177 21 21 chr1 31641704 31641800 -250551864 - MIR SINE MIR -97 165 70 2288 91 0 33 chr1 31642260 31642567 -250551097 + AluSq SINE Alu 1 297 -16 343 223 62 36 chr1 31642745 31642857 -250550807 - L1ME LINE L1 -377 5744 5630 403 104 17 0 chr1 31643091 31643165 -250550499 + Alu SINE Alu 1 57 -242 356 249 0 12 chr1 31643160 31643257 -250550407 - FLAM_A SINE Alu -61 72 4 * 2615 30 40 0 chr1 31643298 31643594 -250550070 + AluY SINE Alu 1 308 -3 1786 95 4 4 chr1 31643631 31643872 -250549792 - AluSx SINE Alu -22 290 50 328 281 8 66 chr1 31643926 31644047 -250549617 - L1ME3A LINE L1 -113 6057 5944 1933 151 23 0 chr1 31644062 31644411 -250549253 + AluSx SINE Alu 1 356 0 747 138 0 0 chr1 31644414 31644530 -250549134 - AluJo/FLAM SINE Alu -186 116 1 555 238 156 63 chr1 31644560 31644717 -250548947 - L1ME3A LINE L1 -220 5950 5809 2461 72 7 7 chr1 31644717 31645021 -250548643 - AluY SINE Alu -7 304 1 2353 98 0 3 chr1 31645021 31645317 -250548347 - AluSp SINE Alu -18 295 1 555 238 156 63 chr1 31645317 31645460 -250548204 - L1ME3A LINE L1 -360 5810 5621 1935 178 0 0 chr1 31645492 31645796 -250547868 - AluJb SINE Alu -8 304 1 776 237 16 5 chr1 31645796 31645982 -250547682 - L1ME3A LINE L1 -1899 4247 4060 2269 113 0 0 chr1 31645990 31646281 -250547383 - AluSg SINE Alu -18 292 2 2032 103 10 48 chr1 31646323 31646458 -250547206 + AluSx SINE Alu 2 141 -171 2595 61 3 6 chr1 31646458 31646770 -250546894 + AluY SINE Alu 1 311 0 2032 103 10 48 chr1 31646770 31646946 -250546718 + AluSx SINE Alu 141 301 -11 343 289 53 27 chr1 31647015 31647090 -250546574 - L1ME3A LINE L1 -3630 2516 2444 2223 132 0 0 chr1 31647090 31647394 -250546270 - AluSx SINE Alu -7 305 2 343 289 53 27 chr1 31647394 31647505 -250546159 - L1ME3A LINE L1 -3702 2444 2325 2480 85 0 0 chr1 31647507 31647813 -250545851 - AluY SINE Alu -5 306 1 292 138 52 0 chr1 31647814 31647872 -250545792 - Alu SINE Alu -1 301 241 211 184 0 0 chr1 31648119 31648157 -250545507 - L2 LINE L2 -8 3305 3268 2325 101 3 0 chr1 31648382 31648678 -250544986 - AluSp SINE Alu -16 297 1 1909 142 8 0 chr1 31648898 31649165 -250544499 - AluSx SINE Alu -43 269 1 195 129 0 0 chr1 31649219 31649250 -250544414 + (TTCC)n Simple_repeat Simple_repeat 2 32 0 315 294 213 51 chr1 31649384 31649779 -250543885 + L2 LINE L2 2811 3269 -3 344 254 77 15 chr1 31649942 31650072 -250543592 - MIR SINE MIR -6 256 119 602 238 0 0 chr1 31650192 31650318 -250543346 - FLAM_A SINE Alu -7 126 1 2418 102 0 3 chr1 31650800 31651113 -250542551 + AluSx SINE Alu 1 312 0 463 134 0 0 chr1 31651418 31651485 -250542179 - AluS SINE Alu -239 72 6 1991 114 3 14 chr1 31651516 31651832 -250541832 + AluSx SINE Alu 1 313 0 294 147 302 0 chr1 31651833 31651949 -250541715 - L1MCa LINE L1 -3947 2479 2329 2219 105 14 0 chr1 31652473 31652769 -250540895 - AluSp SINE Alu -13 300 1 2296 108 7 0 chr1 31652771 31653066 -250540598 - AluSq SINE Alu -16 297 1 2338 78 0 13 chr1 31653073 31653379 -250540285 - AluY SINE Alu -9 302 1 282 233 78 58 chr1 31653679 31653782 -250539882 + L2 LINE L2 3192 3296 -17 2486 68 0 0 chr1 31654150 31654444 -250539220 - AluY SINE Alu -16 295 2 1140 92 0 0 chr1 31654468 31654610 -250539054 + AluSg SINE Alu 2 143 -167 2359 84 7 3 chr1 31654610 31654909 -250538755 + AluSc SINE Alu 2 301 -8 2170 130 13 0 chr1 31656058 31656359 -250537305 + AluSq SINE Alu 1 305 -8 2305 96 0 3 chr1 31656673 31656966 -250536698 - AluSg SINE Alu -18 292 1 29 70 0 0 chr1 31657116 31657173 -250536491 + AT_rich Low_complexity Low_complexity 1 57 0 261 286 14 14 chr1 31658064 31658204 -250535460 + (CTG)n Simple_repeat Simple_repeat 2 141 0 * 266 282 0 53 chr1 31658108 31658296 -250535368 + CT-rich Low_complexity Low_complexity 1 178 0 2319 92 0 22 chr1 31658701 31659017 -250534647 + AluSg SINE Alu 1 309 -1 1544 184 67 3 chr1 31659062 31659345 -250534319 + AluJb SINE Alu 1 301 -11 299 333 156 44 chr1 31659553 31659581 -250534083 + L2 LINE L2 2198 2221 -1093 2340 91 3 0 chr1 31659581 31659866 -250533798 - AluSp SINE Alu -27 286 1 299 333 156 44 chr1 31659866 31660293 -250533371 + L2 LINE L2 2221 2704 -610 476 243 93 29 chr1 31660330 31660470 -250533194 + L1MC4 LINE L1 6769 6917 -1125 396 238 66 20 chr1 31660479 31660630 -250533034 + L1MC5 LINE L1 7269 7426 -535 1178 125 5 22 chr1 31660630 31660814 -250532850 + AluSg/x SINE Alu 115 295 -15 651 251 85 73 chr1 31660843 31661254 -250532410 + L1MC4 LINE L1 7596 8011 -31 461 242 128 49 chr1 31661267 31661298 -250532366 + L1MC5 LINE L1 7581 7608 -353 873 144 0 0 chr1 31661298 31661430 -250532234 + FLAM_C SINE Alu 1 132 -1 461 242 128 49 chr1 31661430 31661725 -250531939 + L1MC5 LINE L1 7608 7933 -28 336 357 141 33 chr1 31661801 31661942 -250531722 + L2 LINE L2 2811 2935 -337 2355 104 0 13 chr1 31661942 31662251 -250531413 + AluSx SINE Alu 4 308 -4 336 357 141 33 chr1 31662251 31662439 -250531225 + L2 LINE L2 2935 3193 -79 2162 103 0 51 chr1 31662439 31662751 -250530913 - AluSx SINE Alu -16 296 1 336 357 141 33 chr1 31662751 31662818 -250530846 + L2 LINE L2 3193 3251 -21 2347 70 17 17 chr1 31662904 31663205 -250530459 - AluSp SINE Alu -12 301 1 1984 90 26 11 chr1 31663216 31663364 -250530300 - AluSg SINE Alu -25 285 130 2065 96 13 46 chr1 31663364 31663667 -250529997 - AluSq SINE Alu -19 294 2 1984 90 26 11 chr1 31663667 31663785 -250529879 - AluSg SINE Alu -180 130 15 1876 171 3 3 chr1 31664453 31664751 -250528913 + AluJo SINE Alu 1 298 -14 1757 173 3 14 chr1 31664813 31665097 -250528567 - AluSx SINE Alu -31 281 1 494 101 0 0 chr1 31665270 31665363 -250528301 + AluSc SINE Alu 213 305 0 2080 134 7 3 chr1 31665377 31665675 -250527989 + AluSx SINE Alu 1 299 -13 622 261 36 10 chr1 31665749 31665944 -250527720 - MIR SINE MIR -32 230 31 3642 94 3 52 chr1 31666037 31666613 -250527051 - LTR14 LTR ERVK 0 548 1 206 114 159 23 chr1 31666860 31666904 -250526760 + MIR SINE MIR 20 69 -139 2162 108 14 10 chr1 31667194 31667489 -250526175 + AluSx SINE Alu 1 296 -16 1472 117 0 15 chr1 31667740 31667937 -250525727 - AluSg/x SINE Alu -16 296 103 517 189 0 0 chr1 31667987 31668082 -250525582 + AluJb SINE Alu 23 117 -195 323 164 66 0 chr1 31668082 31668143 -250525521 + AluJ/FRAM SINE Alu 227 291 -11 2059 78 56 7 chr1 31668146 31668415 -250525249 + AluSg1 SINE Alu 1 282 -27 405 0 0 0 chr1 31668415 31668460 -250525204 + (CAAAC)n Simple_repeat Simple_repeat 1 45 0 186 43 0 0 chr1 31670894 31670917 -250522747 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2210 86 29 0 chr1 31670919 31671199 -250522465 - AluSx SINE Alu -24 288 1 23 0 0 0 chr1 31672354 31672377 -250521287 + AT_rich Low_complexity Low_complexity 1 23 0 398 298 120 6 chr1 31672979 31673137 -250520527 - MIR SINE MIR -75 187 12 384 282 107 7 chr1 31673157 31673323 -250520341 + MIR3 SINE MIR 46 222 -18 682 179 0 0 chr1 31673339 31673456 -250520208 - FLAM_A SINE Alu -16 117 1 228 254 28 14 chr1 31673783 31673854 -250519810 + (TA)n Simple_repeat Simple_repeat 2 73 0 961 177 59 15 chr1 31674187 31674390 -250519274 + MER46A DNA MER2_type 2 213 -23 231 239 63 113 chr1 31675972 31676114 -250517550 - MIR3 SINE MIR -62 146 12 2306 117 0 0 chr1 31676690 31676989 -250516675 - AluSg SINE Alu -11 299 1 183 235 39 39 chr1 31677067 31677118 -250516546 + MIR SINE MIR 186 236 -26 * 540 315 63 13 chr1 31677076 31677314 -250516350 - MIR SINE MIR -8 254 5 1852 136 3 60 chr1 31677319 31677636 -250516028 - AluSx SINE Alu -13 299 1 469 264 172 35 chr1 31678379 31678606 -250515058 - MIR SINE MIR 0 262 5 394 286 40 18 chr1 31680721 31680853 -250512811 + MIR SINE MIR 34 172 -61 2276 116 10 0 chr1 31681595 31681897 -250511767 - AluSx SINE Alu -7 305 1 852 264 52 26 chr1 31681942 31682324 -250511340 + L1ME4a LINE L1 5515 5906 -215 2517 64 0 22 chr1 31682436 31682749 -250510915 - AluY SINE Alu -5 306 1 2171 96 61 3 chr1 31682759 31683052 -250510612 - AluSx SINE Alu -2 310 1 28 71 0 0 chr1 31683125 31683181 -250510483 + AT_rich Low_complexity Low_complexity 1 56 0 2345 96 0 16 chr1 31683212 31683526 -250510138 + AluSx SINE Alu 4 312 0 802 282 67 23 chr1 31683532 31683919 -250509745 + L1ME4a LINE L1 5522 5925 -196 2353 98 7 0 chr1 31683978 31684274 -250509390 - AluSc SINE Alu -11 298 1 24 0 0 0 chr1 31684280 31684304 -250509360 + AT_rich Low_complexity Low_complexity 1 24 0 1855 112 82 4 chr1 31684442 31684711 -250508953 + AluSx SINE Alu 1 290 -22 2686 51 0 0 chr1 31684716 31685027 -250508637 + AluY SINE Alu 1 311 0 2496 90 0 0 chr1 31685276 31685587 -250508077 + AluY SINE Alu 1 311 0 22 70 0 0 chr1 31685775 31685818 -250507846 + AT_rich Low_complexity Low_complexity 1 43 0 2257 111 3 3 chr1 31686582 31686888 -250506776 - AluSp SINE Alu -7 306 1 2366 117 0 0 chr1 31687200 31687507 -250506157 - AluSx SINE Alu -5 307 1 2346 49 26 42 chr1 31687661 31687969 -250505695 - AluY SINE Alu -8 303 1 1247 184 120 30 chr1 31688687 31688953 -250504711 - AluJo SINE Alu -9 293 4 368 263 114 34 chr1 31689399 31689552 -250504112 - MIR SINE MIR -45 163 2 181 79 0 53 chr1 31691142 31691180 -250502484 + (CGG)n Simple_repeat Simple_repeat 1 36 0 505 259 83 51 chr1 31691528 31691744 -250501920 + MIR SINE MIR 28 250 -12 539 245 32 69 chr1 31691824 31691869 -250501795 + MIR SINE MIR 76 121 -141 2415 65 3 0 chr1 31691869 31692163 -250501501 - AluSx SINE Alu -17 295 1 539 245 32 69 chr1 31692163 31692305 -250501359 + MIR SINE MIR 121 256 -6 294 274 216 19 chr1 31692507 31692701 -250500963 - L1MC4a LINE L1 -1886 5922 5683 222 37 0 0 chr1 31692701 31692728 -250500936 + (TC)n Simple_repeat Simple_repeat 2 28 0 294 274 216 19 chr1 31692728 31692741 -250500923 - L1MC4a LINE L1 -2125 5683 5674 646 226 140 11 chr1 31692801 31693117 -250500547 - L1MC4a LINE L1 -748 5398 5162 2204 103 3 10 chr1 31693184 31693496 -250500168 - AluSg SINE Alu 0 310 1 1797 100 4 8 chr1 31693496 31693734 -250499930 - AluSx SINE Alu -14 298 61 2021 142 3 3 chr1 31693789 31694077 -250499587 + AluSq SINE Alu 1 288 -25 604 184 53 66 chr1 31694080 31694160 -250499504 - AluJo SINE Alu -161 151 72 2420 95 0 3 chr1 31694160 31694465 -250499199 + AluSq SINE Alu 1 304 -9 604 184 53 66 chr1 31694465 31694536 -250499128 - AluJo SINE Alu -240 72 2 30 0 0 0 chr1 31694540 31694570 -250499094 + AT_rich Low_complexity Low_complexity 1 30 0 1200 142 0 0 chr1 31694573 31694742 -250498922 - AluSg/x SINE Alu -19 293 125 2150 105 11 0 chr1 31694747 31695032 -250498632 - AluSp SINE Alu -25 288 1 1112 179 0 47 chr1 31695100 31695334 -250498330 + AluJb SINE Alu 88 310 -2 191 300 0 0 chr1 31695612 31695652 -250498012 + L2 LINE L2 2928 2967 -346 636 251 35 48 chr1 31695686 31695913 -250497751 + L2 LINE L2 3090 3313 0 201 229 98 0 chr1 31695915 31695976 -250497688 + L2 LINE L2 2595 2661 -653 430 217 53 86 chr1 31696122 31696274 -250497390 + MIR3 SINE MIR 39 185 -23 2092 101 24 10 chr1 31696531 31696827 -250496837 - AluSx SINE Alu -12 300 1 1769 90 0 57 chr1 31696915 31697072 -250496592 - AluSg/x SINE Alu -10 302 162 2573 66 0 3 chr1 31697072 31697376 -250496288 + AluY SINE Alu 1 303 -8 1769 90 0 57 chr1 31697376 31697463 -250496201 - AluSg/x SINE Alu -150 162 72 2002 129 3 48 chr1 31697512 31697823 -250495841 - AluSx SINE Alu -15 297 1 2375 81 14 0 chr1 31697962 31698258 -250495406 - AluSq SINE Alu -13 300 1 2187 114 10 0 chr1 31698267 31698556 -250495108 - AluSq SINE Alu -20 293 2 447 67 0 0 chr1 31698557 31698617 -250495047 - AluSq/x SINE Alu -177 135 76 1238 147 5 47 chr1 31698620 31698831 -250494833 - AluJb SINE Alu -108 204 3 834 194 127 99 chr1 31699257 31699413 -250494251 - MLT1J LTR MaLR 0 511 361 2102 45 0 4 chr1 31699413 31699657 -250494007 + AluY SINE Alu 1 243 -68 834 194 127 99 chr1 31699657 31699674 -250493990 - MLT1J LTR MaLR -150 361 346 237 33 0 0 chr1 31699674 31699704 -250493960 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 834 194 127 99 chr1 31699704 31699832 -250493832 - MLT1J LTR MaLR -165 346 223 2165 104 19 19 chr1 31699832 31700139 -250493525 + AluSx SINE Alu 1 307 -5 834 194 127 99 chr1 31700139 31700298 -250493366 - MLT1J LTR MaLR -288 223 36 240 330 75 0 chr1 31700323 31700429 -250493235 + L2 LINE L2 2921 3034 -238 1198 123 0 0 chr1 31700631 31700793 -250492871 - AluSg/x SINE Alu -19 291 130 2209 109 3 0 chr1 31701132 31701426 -250492238 + AluSg SINE Alu 1 295 -15 429 322 160 27 chr1 31701446 31701926 -250491738 + L2 LINE L2 2718 3266 -6 217 266 80 62 chr1 31702160 31702221 -250491443 + L2 LINE L2 3106 3171 -142 984 203 13 48 chr1 31702221 31702267 -250491397 - MER20 DNA MER1_type 0 219 173 2181 138 0 0 chr1 31702267 31702565 -250491099 - AluJb SINE Alu -14 298 1 984 203 13 48 chr1 31702565 31702745 -250490919 - MER20 DNA MER1_type -46 173 1 217 266 80 62 chr1 31702745 31702796 -250490868 + L2 LINE L2 3171 3220 -93 2043 151 0 19 chr1 31704156 31704468 -250489196 + AluJb SINE Alu 3 308 -4 374 208 0 0 chr1 31704790 31704862 -250488802 + MIR SINE MIR 85 156 -106 446 139 36 158 chr1 31704879 31705014 -250488650 - MIR SINE MIR -81 127 7 229 292 124 0 chr1 31704999 31705088 -250488576 + L2 LINE L2 3125 3224 -48 * 1891 147 7 10 chr1 31705725 31706018 -250487646 + AluJo SINE Alu 1 292 -20 1682 190 20 16 chr1 31706043 31706348 -250487316 + AluJb SINE Alu 2 307 -5 199 256 0 0 chr1 31706349 31706388 -250487276 + MER5A DNA MER1_type 68 106 -83 191 260 50 50 chr1 31706526 31706626 -250487038 + MIR SINE MIR 36 135 -127 420 283 0 0 chr1 31707103 31707195 -250486469 - MIR SINE MIR -5 257 166 194 222 74 19 chr1 31707167 31707221 -250486443 - MIR3 SINE MIR -37 171 115 * 2220 154 3 3 chr1 31707268 31707605 -250486059 - MER1B DNA MER1_type 0 337 1 510 266 5 58 chr1 31707605 31707782 -250485882 - MIR SINE MIR -80 182 14 278 313 128 39 chr1 31707866 31707929 -250485735 + MIR SINE MIR 49 105 -157 2271 123 0 0 chr1 31707929 31708237 -250485427 - AluSx SINE Alu -4 308 1 278 313 128 39 chr1 31708237 31708352 -250485312 + MIR SINE MIR 105 243 -19 181 326 0 0 chr1 31708434 31708480 -250485184 + L2 LINE L2 3264 3309 -4 2458 70 0 0 chr1 31708549 31708847 -250484817 - AluY SINE Alu -13 298 1 1914 149 45 7 chr1 31708940 31709228 -250484436 - AluSx SINE Alu -13 299 1 918 128 23 0 chr1 31709248 31709381 -250484283 - AluJo SINE Alu -176 136 1 1820 180 3 25 chr1 31710100 31710416 -250483248 - AluJo SINE Alu -3 309 1 332 268 123 45 chr1 31710724 31710903 -250482761 + MIR SINE MIR 16 208 -54 302 271 104 10 chr1 31711921 31712017 -250481647 + MIR SINE MIR 61 165 -97 259 372 21 35 chr1 31712851 31712996 -250480668 + L2 LINE L2 2917 3059 -213 299 336 44 29 chr1 31713278 31713415 -250480249 + MIR SINE MIR 2 140 -122 1128 58 0 15 chr1 31713415 31713552 -250480112 + AluSg/x SINE Alu 159 293 -19 681 221 54 45 chr1 31713716 31713938 -250479726 - MER112 DNA MER1_type -15 245 22 440 227 129 76 chr1 31714493 31714554 -250479110 + LTR16C LTR ERVL 255 311 -180 2058 100 25 4 chr1 31714554 31714835 -250478829 + AluSg SINE Alu 1 287 -23 440 227 129 76 chr1 31714835 31714998 -250478666 + LTR16C LTR ERVL 311 491 0 366 280 21 0 chr1 31714998 31715091 -250478573 + MIR SINE MIR 60 154 -108 317 284 158 8 chr1 31715170 31715297 -250478367 - MIR SINE MIR -110 152 7 271 203 253 0 chr1 31715437 31715516 -250478148 + L2 LINE L2 3174 3272 0 1997 160 7 0 chr1 31716118 31716425 -250477239 - AluSx SINE Alu -3 309 1 1714 168 23 29 chr1 31716468 31716778 -250476886 + AluJo SINE Alu 5 312 0 181 245 29 128 chr1 31716780 31716882 -250476782 - L2 LINE L2 -1335 1979 1888 2439 71 3 0 chr1 31717003 31717297 -250476367 - AluSq SINE Alu -18 295 1 478 281 98 7 chr1 31717564 31717717 -250475947 - MIR3 SINE MIR -7 201 35 238 291 296 12 chr1 31717757 31718004 -250475660 - L2 LINE L2 -76 3237 2921 641 205 79 51 chr1 31718130 31718345 -250475319 + MER112 DNA MER1_type 28 248 -12 624 309 72 0 chr1 31718392 31718657 -250475007 - L2 LINE L2 -548 2766 2483 220 313 125 27 chr1 31718687 31718799 -250474865 + MIR SINE MIR 13 135 -127 2366 87 0 7 chr1 31719018 31719316 -250474348 - AluY SINE Alu -15 296 1 546 279 96 24 chr1 31719724 31719932 -250473732 + MIR SINE MIR 34 256 -6 1067 169 48 87 chr1 31720029 31720093 -250473571 + MER58A DNA MER1_type 3 68 -2352 1458 187 90 4 chr1 31720093 31720371 -250473293 - AluJb SINE Alu -10 302 1 1067 169 48 87 chr1 31720371 31720537 -250473127 + MER58A DNA MER1_type 68 224 0 321 257 159 18 chr1 31720630 31720743 -250472921 - MIR SINE MIR -63 145 17 309 355 153 0 chr1 31720934 31721058 -250472606 + L2 LINE L2 3122 3264 -8 2128 97 32 26 chr1 31721139 31721447 -250472217 + AluSx SINE Alu 1 310 -2 518 328 119 39 chr1 31721509 31722260 -250471404 + L2 LINE L2 2443 3248 -24 532 225 67 0 chr1 31722774 31722894 -250470770 + MIR SINE MIR 129 256 -6 259 316 46 40 chr1 31722940 31723031 -250470633 + MLT1K LTR MaLR 421 510 -78 2373 102 3 0 chr1 31723031 31723334 -250470330 - AluSx SINE Alu -8 304 1 2342 110 0 0 chr1 31723334 31723635 -250470029 - AluSx SINE Alu -11 301 1 259 316 46 40 chr1 31723635 31723694 -250469970 + MLT1K LTR MaLR 509 573 -15 260 243 69 88 chr1 31723713 31723898 -250469766 + MIR SINE MIR 34 218 -44 690 112 0 10 chr1 31724007 31724105 -250469559 - FRAM SINE Alu -31 145 49 2030 129 28 0 chr1 31724411 31724697 -250468967 + AluSx SINE Alu 6 299 -13 2402 93 3 3 chr1 31724697 31725009 -250468655 + AluSq SINE Alu 1 312 -1 271 274 207 30 chr1 31725289 31725453 -250468211 + MIR SINE MIR 13 205 -57 535 169 0 0 chr1 31726314 31726397 -250467267 + AluJb SINE Alu 36 118 -194 26 30 0 0 chr1 31726397 31726430 -250467234 + AT_rich Low_complexity Low_complexity 1 33 0 471 329 35 12 chr1 31726510 31726680 -250466984 + MIR SINE MIR 77 250 -12 2162 100 3 16 chr1 31726782 31727092 -250466572 - AluSx SINE Alu -6 306 1 447 207 48 55 chr1 31727776 31727921 -250465743 + MER5B DNA MER1_type 1 144 -34 756 163 0 24 chr1 31727924 31728081 -250465583 + FLAM_A SINE Alu 1 133 0 1562 124 135 4 chr1 31728183 31728442 -250465222 - AluSg1 SINE Alu -14 295 3 186 241 19 19 chr1 31728685 31728739 -250464925 - L2 LINE L2 -8 3264 3211 2217 77 3 7 chr1 31729034 31729332 -250464332 - AluSx SINE Alu -15 297 1 412 235 130 23 chr1 31729510 31729644 -250464020 - MIR SINE MIR -67 141 8 217 280 11 65 chr1 31729761 31729854 -250463810 - MIR SINE MIR -121 141 54 337 297 0 30 chr1 31729928 31730029 -250463635 + MIR SINE MIR 16 113 -95 856 238 72 8 chr1 31730120 31730355 -250463309 + MIR SINE MIR 11 260 -2 189 180 246 0 chr1 31731068 31731129 -250462535 - MIR SINE MIR -13 249 174 627 244 103 1 chr1 31731184 31731363 -250462301 + MIR SINE MIR 6 198 -62 183 80 0 0 chr1 31731631 31731656 -250462008 + (GGGTG)n Simple_repeat Simple_repeat 3 27 0 410 248 48 19 chr1 31731713 31731818 -250461846 + MER5A DNA MER1_type 60 167 -22 274 311 41 33 chr1 31731727 31731849 -250461815 - MER5A DNA MER1_type -66 123 1 * 787 242 19 92 chr1 31731938 31732198 -250461466 + MIR SINE MIR 21 261 -1 299 265 0 24 chr1 31732198 31732281 -250461383 + MIR SINE MIR 182 262 0 228 279 44 0 chr1 31732999 31733067 -250460597 + L2 LINE L2 3227 3297 -16 2105 73 50 30 chr1 31733210 31733510 -250460154 - AluSq SINE Alu -7 306 1 501 221 0 46 chr1 31733622 31733753 -250459911 + MIR SINE MIR 20 144 -118 879 296 63 32 chr1 31734328 31734843 -250458821 + L2 LINE L2 2720 3239 -74 278 272 81 66 chr1 31734836 31734884 -250458780 - L2 LINE L2 0 3313 3267 * 2108 99 0 0 chr1 31734884 31735194 -250458470 + AluSq SINE Alu 1 310 0 278 272 81 66 chr1 31735194 31735278 -250458386 - L2 LINE L2 -46 3267 3176 491 191 59 66 chr1 31735416 31735568 -250458096 + L2 LINE L2 3159 3309 -4 219 226 95 48 chr1 31735677 31735761 -250457903 + MIR SINE MIR 149 236 -26 511 278 78 29 chr1 31735790 31736035 -250457629 + L3 LINE CR1 1264 1520 -57 186 71 0 0 chr1 31736352 31736380 -250457284 + (CTCCG)n Simple_repeat Simple_repeat 1 28 0 29 47 0 0 chr1 31736417 31736460 -250457204 + GC_rich Low_complexity Low_complexity 1 43 0 201 182 0 0 chr1 31737377 31737410 -250456254 + (TG)n Simple_repeat Simple_repeat 1 33 0 21 0 0 0 chr1 31737491 31737512 -250456152 + GC_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chr1 31737577 31737618 -250456046 + GC_rich Low_complexity Low_complexity 1 41 0 239 147 103 44 chr1 31737624 31737760 -250455904 + (CCGGG)n Simple_repeat Simple_repeat 3 146 0 294 294 17 8 chr1 31737988 31738107 -250455557 + (TG)n Simple_repeat Simple_repeat 2 121 0 222 324 0 0 chr1 31738694 31738768 -250454896 + MIR SINE MIR 83 156 -106 567 320 64 64 chr1 31739809 31740247 -250453417 + L2 LINE L2 2835 3272 0 2247 110 0 0 chr1 31741406 31741716 -250451948 - AluSg SINE Alu 0 310 1 2284 94 0 0 chr1 31741716 31742015 -250451649 - AluSx SINE Alu -13 299 1 232 200 0 22 chr1 31742261 31742306 -250451358 + MER3 DNA MER1_type 3 46 -163 903 195 65 20 chr1 31742307 31742507 -250451157 - MER3 DNA MER1_type 0 209 1 314 293 88 94 chr1 31742640 31742722 -250450942 + L2 LINE L2 2588 2669 -645 2114 107 0 0 chr1 31742722 31743020 -250450644 - AluY SINE Alu -13 298 1 314 293 88 94 chr1 31743020 31743289 -250450375 + L2 LINE L2 2669 2937 -377 2190 112 0 0 chr1 31743446 31743759 -250449905 + AluSq SINE Alu 1 313 0 24 0 0 0 chr1 31743781 31743805 -250449859 + AT_rich Low_complexity Low_complexity 1 24 0 24 53 0 0 chr1 31743951 31743989 -250449675 + AT_rich Low_complexity Low_complexity 1 38 0 838 205 7 0 chr1 31743989 31744140 -250449524 - FRAM SINE Alu -14 152 1 1041 154 6 0 chr1 31744275 31744444 -250449220 + AluJo SINE Alu 1 170 -142 2068 103 3 52 chr1 31744686 31745015 -250448649 + AluSp SINE Alu 1 313 0 2077 100 0 37 chr1 31745576 31745897 -250447767 - AluSx SINE Alu -3 309 1 195 336 87 39 chr1 31746251 31746355 -250447309 + MIR3 SINE MIR 49 157 -51 343 170 0 0 chr1 31746935 31746982 -250446682 + G-rich Low_complexity Low_complexity 1 47 0 1800 5 0 0 chr1 31747082 31747278 -250446386 - L1HS LINE L1 -157 5998 5803 900 112 0 8 chr1 31747743 31747877 -250445787 + FLAM_C SINE Alu 1 133 0 2067 98 11 0 chr1 31749077 31749362 -250444302 + AluSq SINE Alu 1 288 -25 2000 127 0 0 chr1 31749464 31749756 -250443908 - AluSx SINE Alu -20 292 1 450 149 0 0 chr1 31749838 31749905 -250443759 - FLAM_A SINE Alu -33 109 43 2148 86 3 7 chr1 31750034 31750324 -250443340 - AluSp SINE Alu -24 289 1 217 309 209 0 chr1 31750704 31750814 -250442850 - MIR SINE MIR -97 165 33 209 356 0 0 chr1 31750871 31750961 -250442703 + MIR3 SINE MIR 111 200 -8 1805 163 0 0 chr1 31750963 31751258 -250442406 + AluJb SINE Alu 4 298 -14 1041 158 0 0 chr1 31752831 31752996 -250440668 + FRAM SINE Alu 2 166 0 305 130 0 0 chr1 31753021 31753075 -250440589 - Alu SINE Alu 0 300 247 24 53 0 0 chr1 31754610 31754648 -250439016 + AT_rich Low_complexity Low_complexity 1 38 0 2309 92 0 0 chr1 31755258 31755562 -250438102 + AluSx SINE Alu 1 304 -8 210 298 91 50 chr1 31755715 31755836 -250437828 + MIR SINE MIR 49 174 -88 21 0 0 0 chr1 31756323 31756344 -250437320 + AT_rich Low_complexity Low_complexity 1 21 0 2447 57 3 0 chr1 31757308 31757605 -250436059 + AluY SINE Alu 3 300 -11 2154 112 3 0 chr1 31757626 31757922 -250435742 + AluSx SINE Alu 1 297 -15 22 0 0 0 chr1 31758186 31758208 -250435456 + AT_rich Low_complexity Low_complexity 1 22 0 608 263 153 55 chr1 31758259 31758567 -250435097 - L3 LINE CR1 -3 1574 1237 832 176 7 0 chr1 31759191 31759344 -250434320 + AluJb SINE Alu 137 290 -22 820 144 0 0 chr1 31759719 31759844 -250433820 + FLAM_A SINE Alu 1 125 -8 1536 182 45 27 chr1 31760085 31760374 -250433290 - MER58B DNA MER1_type -2079 341 44 1944 135 28 0 chr1 31760374 31760662 -250433002 + AluSx SINE Alu 1 296 -16 1536 182 45 27 chr1 31760662 31760707 -250432957 - MER58B DNA MER1_type -2376 44 1 1238 206 51 20 chr1 31760907 31761199 -250432465 + AluJo SINE Alu 2 302 0 33 114 0 0 chr1 31761267 31761355 -250432309 + AT_rich Low_complexity Low_complexity 1 88 0 122 83 0 7 chr1 31761390 31761692 -250431972 + AT_rich Low_complexity Low_complexity 1 300 0 909 224 35 39 chr1 31762264 31762523 -250431141 + MIR SINE MIR 4 261 -1 2065 125 0 0 chr1 31764286 31764581 -250429083 - AluSx SINE Alu -17 295 1 441 269 77 0 chr1 31766631 31766761 -250426903 - MIR3 SINE MIR -35 173 34 234 156 0 0 chr1 31766824 31766869 -250426795 + (CA)n Simple_repeat Simple_repeat 1 45 0 290 288 147 39 chr1 31767518 31767978 -250425686 + L2 LINE L2 2724 3241 -31 409 234 47 9 chr1 31768076 31768183 -250425481 + MIR SINE MIR 51 161 -101 1893 147 3 3 chr1 31768640 31768939 -250424725 + AluSx SINE Alu 1 299 -13 2134 128 0 0 chr1 31769927 31770239 -250423425 - AluSx SINE Alu 0 312 1 4523 139 94 33 chr1 31770402 31771224 -250422440 - MER21A LTR ERV1 0 931 60 22 0 0 0 chr1 31771224 31771246 -250422418 + AT_rich Low_complexity Low_complexity 1 22 0 403 301 206 14 chr1 31771543 31771762 -250421902 - MIR SINE MIR -1 261 1 246 263 0 0 chr1 31771762 31771818 -250421846 + MIR SINE MIR 94 149 -59 1645 75 0 0 chr1 31772463 31772675 -250420989 - AluSc SINE Alu -16 293 82 780 224 132 26 chr1 31774080 31774308 -250419356 + MIR SINE MIR 8 259 -3 1604 113 0 17 chr1 31774410 31774650 -250419014 - AluSg/x SINE Alu -4 306 71 2166 90 6 34 chr1 31774650 31774969 -250418695 - AluSq SINE Alu -1 312 1 266 286 0 0 chr1 31774984 31775040 -250418624 + L2 LINE L2 3217 3272 0 416 250 171 0 chr1 31775259 31775411 -250418253 - L1ME3A LINE L1 -5 6165 5988 2034 114 0 7 chr1 31775446 31775743 -250417921 - AluSx SINE Alu -15 297 3 22 0 0 0 chr1 31775973 31775995 -250417669 + AT_rich Low_complexity Low_complexity 1 22 0 2917 3 0 0 chr1 31776324 31776633 -250417031 + AluYa5 SINE Alu 1 309 -2 1861 166 0 3 chr1 31776640 31776923 -250416741 + AluJb SINE Alu 1 325 0 388 0 0 0 chr1 31776923 31776966 -250416698 + (TAAA)n Simple_repeat Simple_repeat 2 160 0 2455 69 0 0 chr1 31777129 31777435 -250416229 + AluY SINE Alu 1 306 -5 2224 122 3 3 chr1 31777643 31777955 -250415709 + AluSx SINE Alu 1 312 0 22 35 0 0 chr1 31778388 31778417 -250415247 + AT_rich Low_complexity Low_complexity 1 29 0 2425 82 0 3 chr1 31779100 31779405 -250414259 - AluSq SINE Alu -7 306 3 2242 99 3 16 chr1 31779523 31779826 -250413838 - AluY SINE Alu -12 299 1 1849 123 43 0 chr1 31779947 31780223 -250413441 - AluSx SINE Alu -19 293 6 417 340 49 14 chr1 31780250 31780394 -250413270 - L2 LINE L2 -5 3267 3119 489 83 0 0 chr1 31780433 31780493 -250413171 - AluSx SINE Alu -17 292 233 1283 137 11 16 chr1 31780493 31780683 -250412981 - AluSx SINE Alu -123 189 1 363 368 37 37 chr1 31781305 31781468 -250412196 - L2 LINE L2 -6 3266 3104 307 197 82 34 chr1 31781606 31781729 -250411935 + MIR SINE MIR 31 154 -62 2103 138 0 3 chr1 31782287 31782583 -250411081 + AluSx SINE Alu 1 295 -17 280 304 36 18 chr1 31782597 31782709 -250410955 - MIR3 SINE MIR -28 180 67 784 170 67 0 chr1 31782832 31782967 -250410697 + AluJb SINE Alu 158 301 -11 2165 125 0 10 chr1 31783024 31783337 -250410327 - AluSx SINE Alu -2 310 1 1983 125 7 0 chr1 31783611 31783946 -250409718 + AluSx SINE Alu 1 337 0 2001 133 3 3 chr1 31783955 31784256 -250409408 + AluSx SINE Alu 1 301 -11 952 278 8 28 chr1 31784489 31784741 -250408923 + MIR SINE MIR 16 262 0 272 307 136 0 chr1 31784988 31785076 -250408588 - L2 LINE L2 -38 3275 3176 1963 138 7 0 chr1 31785217 31785524 -250408140 - AluSx SINE Alu 0 319 11 200 361 19 28 chr1 31785634 31785742 -250407922 - MIR SINE MIR -82 126 20 1319 272 105 37 chr1 31785777 31786159 -250407505 - L2 LINE L2 -35 3278 2820 719 216 155 0 chr1 31786159 31786340 -250407324 + MER3 DNA MER1_type 1 209 0 1319 272 105 37 chr1 31786340 31786610 -250407054 - L2 LINE L2 -493 2820 2570 1464 147 20 49 chr1 31786725 31786970 -250406694 - AluJb SINE Alu -69 243 6 1718 150 0 18 chr1 31787045 31787325 -250406339 - AluJb SINE Alu -10 302 28 10912 144 36 13 chr1 31787342 31789110 -250404554 - Ricksha DNA DNA -1348 1898 91 555 138 0 0 chr1 31789043 31789123 -250404541 + Ricksha DNA DNA 2775 2854 0 * 261 0 0 0 chr1 31839461 31839490 -250354174 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 465 318 68 17 chr1 31839691 31839867 -250353797 - MIR SINE MIR -66 196 12 206 326 21 11 chr1 31843115 31843210 -250350454 - MIR3 SINE MIR -51 157 62 314 324 173 11 chr1 31843570 31843749 -250349915 - MIR SINE MIR -9 253 46 262 274 83 12 chr1 31844632 31844716 -250348948 + L2 LINE L2 3134 3223 -49 1619 86 0 9 chr1 31844845 31845065 -250348599 - AluY SINE Alu -11 300 83 2089 103 0 17 chr1 31845076 31845368 -250348296 - AluSq SINE Alu -24 289 3 274 338 88 44 chr1 31845446 31845742 -250347922 - L2 LINE L2 0 3313 3005 554 281 0 27 chr1 31846468 31846653 -250347011 + (TG)n Simple_repeat Simple_repeat 1 180 0 572 260 78 37 chr1 31847493 31847731 -250345933 - MIR SINE MIR -8 254 3 425 353 168 10 chr1 31847802 31848307 -250345357 - L3 LINE CR1 -509 1068 484 631 279 64 10 chr1 31849606 31849810 -250343854 + MIR SINE MIR 11 225 -37 2047 118 0 46 chr1 31850059 31850234 -250343430 - AluSx SINE Alu -4 308 153 2148 105 7 0 chr1 31850234 31850529 -250343135 - AluSx SINE Alu -15 297 1 2047 118 0 46 chr1 31850529 31850676 -250342988 - AluSx SINE Alu -159 153 1 2416 63 0 0 chr1 31850723 31851023 -250342641 - AluY SINE Alu -9 302 3 2481 278 83 25 chr1 31851077 31852274 -250341390 - L1ME3A LINE L1 -220 5950 4824 1854 140 3 34 chr1 31852274 31852596 -250341068 - AluJb SINE Alu 0 312 1 2481 278 83 25 chr1 31852596 31852941 -250340723 - L1ME3A LINE L1 -1346 4824 4500 2165 106 0 13 chr1 31852941 31853242 -250340422 - AluSx SINE Alu -15 297 1 2481 278 83 25 chr1 31853242 31853733 -250339931 - L1ME3A LINE L1 -1670 4500 3787 1755 175 0 40 chr1 31853748 31854073 -250339591 - AluJb SINE Alu 0 312 1 454 305 0 81 chr1 31854073 31854270 -250339394 - L1ME3A LINE L1 -2643 3503 3323 2227 97 0 3 chr1 31854304 31854603 -250339061 - AluSx SINE Alu -11 301 4 447 248 9 9 chr1 31854625 31854734 -250338930 - MIR SINE MIR -60 148 40 2151 112 0 16 chr1 31855228 31855541 -250338123 + AluSx SINE Alu 2 309 -3 495 246 117 55 chr1 31855973 31856159 -250337505 + MIR SINE MIR 4 196 -62 298 226 283 19 chr1 31856363 31856469 -250337195 - MIR3 SINE MIR -64 144 11 516 329 96 0 chr1 31857282 31857501 -250336163 - MIR SINE MIR -22 240 1 530 296 7 0 chr1 31857542 31857694 -250335970 - MER103 DNA DNA -3 163 11 295 169 51 0 chr1 31857797 31857856 -250335808 + MIR SINE MIR 92 153 -55 509 276 6 6 chr1 31857856 31858012 -250335652 + L1MEc LINE L1 43 198 -6198 245 311 0 37 chr1 31858177 31858312 -250335352 - L2 LINE L2 -222 3050 2921 5921 122 108 31 chr1 31858458 31858835 -250334829 + Tigger3b DNA MER2_type 1 347 -2681 3566 60 0 0 chr1 31858835 31859265 -250334399 - L1PA5 LINE L1 0 6154 5725 5921 122 108 31 chr1 31859265 31859397 -250334267 + Tigger3b DNA MER2_type 347 467 -2561 330 26 0 0 chr1 31859397 31859436 -250334228 + (TG)n Simple_repeat Simple_repeat 2 40 0 5921 122 108 31 chr1 31859436 31859801 -250333863 + Tigger3b DNA MER2_type 467 802 -2226 2222 97 0 3 chr1 31859801 31860100 -250333564 - AluSg SINE Alu -12 298 1 5921 122 108 31 chr1 31860100 31860363 -250333301 + Tigger3b DNA MER2_type 802 1228 -3 297 350 58 0 chr1 31860833 31860953 -250332711 - MIR3 SINE MIR 0 208 82 575 301 88 5 chr1 31862211 31862427 -250331237 - MIR SINE MIR -8 254 21 879 259 4 32 chr1 31863130 31863377 -250330287 - MIR SINE MIR 0 262 23 541 333 34 58 chr1 31863580 31863992 -250329672 - L2 LINE L2 0 3272 2871 201 74 0 0 chr1 31864414 31864441 -250329223 + (TCC)n Simple_repeat Simple_repeat 3 29 0 222 167 30 30 chr1 31864442 31864508 -250329156 + (TCTCTG)n Simple_repeat Simple_repeat 5 70 0 2410 78 13 0 chr1 31865001 31865308 -250328356 - AluSq SINE Alu -2 311 1 1070 128 53 88 chr1 31865371 31865566 -250328098 - AluJo SINE Alu -10 302 115 1724 163 7 0 chr1 31865566 31865848 -250327816 + AluJb SINE Alu 29 312 0 1070 128 53 88 chr1 31865848 31865878 -250327786 - AluJo SINE Alu -197 115 85 1446 125 9 30 chr1 31865993 31866225 -250327439 + AluJo SINE Alu 1 227 -85 219 258 30 15 chr1 31866384 31866450 -250327214 - MIR SINE MIR -93 169 103 347 226 226 15 chr1 31866475 31866608 -250327056 + MER5A DNA MER1_type 27 187 -2 192 318 0 15 chr1 31866617 31866683 -250326981 - MIR SINE MIR -111 97 33 866 286 13 9 chr1 31866807 31867034 -250326630 - MIR SINE MIR 0 262 35 190 305 49 37 chr1 31869463 31869545 -250324119 - MIR SINE MIR -81 127 45 501 283 31 25 chr1 31869593 31869752 -250323912 + MIR SINE MIR 86 245 -17 1746 225 86 77 chr1 31870705 31870825 -250322839 - L1ME3A LINE L1 -10 6160 6043 1686 189 3 0 chr1 31870825 31871116 -250322548 + AluJo SINE Alu 1 292 -20 1746 225 86 77 chr1 31871116 31871657 -250322007 - L1ME3A LINE L1 -127 6043 5493 2163 108 0 3 chr1 31871835 31872130 -250321534 - AluSx SINE Alu -18 294 1 249 119 0 0 chr1 31873414 31873456 -250320208 + (TG)n Simple_repeat Simple_repeat 2 43 0 473 328 29 18 chr1 31873576 31873747 -250319917 + MIR SINE MIR 4 176 -86 938 300 184 13 chr1 31873747 31874197 -250319467 - MLT1K LTR MaLR 0 588 62 488 282 74 5 chr1 31874636 31874824 -250318840 - MIR SINE MIR -30 232 23 294 228 0 63 chr1 31874870 31874949 -250318715 + MIR SINE MIR 109 182 -80 616 300 150 17 chr1 31877285 31877638 -250316026 - L2 LINE L2 -4 3309 2910 379 243 98 7 chr1 31878129 31878267 -250315397 + MIR3 SINE MIR 14 168 -40 1710 150 3 56 chr1 31878272 31878592 -250315072 - AluJb SINE Alu -9 303 1 387 328 0 23 chr1 31878688 31878816 -250314848 - MIR SINE MIR -131 131 7 471 301 27 33 chr1 31878851 31879034 -250314630 + MIR SINE MIR 57 238 -24 322 350 70 27 chr1 31879518 31879849 -250313815 - L2 LINE L2 -49 3223 2879 301 291 126 0 chr1 31879916 31880019 -250313645 - MIR SINE MIR -64 144 29 186 143 0 0 chr1 31880024 31880059 -250313605 + (TG)n Simple_repeat Simple_repeat 2 36 0 357 24 0 0 chr1 31881398 31881440 -250312224 + (TCCA)n Simple_repeat Simple_repeat 3 44 0 402 277 17 8 chr1 31883905 31884024 -250309640 + MIR SINE MIR 93 212 -50 228 246 14 29 chr1 31884152 31884221 -250309443 + MIR3 SINE MIR 113 180 -28 289 292 204 0 chr1 31884426 31884563 -250309101 + MIR SINE MIR 79 243 -19 390 265 76 0 chr1 31884669 31884801 -250308863 + MIR3 SINE MIR 3 144 -64 658 261 107 56 chr1 31885057 31885451 -250308213 + MLT1H LTR MaLR 136 549 0 217 337 79 0 chr1 31885505 31885594 -250308070 + L2 LINE L2 3161 3256 -16 217 283 40 30 chr1 31885793 31885892 -250307772 + MIR SINE MIR 149 248 -14 568 348 9 18 chr1 31885958 31886182 -250307482 - MIR SINE MIR -33 229 8 587 153 0 0 chr1 31886957 31887055 -250306609 - MIR SINE MIR -92 170 73 550 290 58 71 chr1 31887067 31887617 -250306047 + L2 LINE L2 2679 3271 -1 311 206 0 16 chr1 31887616 31887679 -250305985 - MIR SINE MIR -187 75 14 * 410 285 86 7 chr1 31887704 31887855 -250305809 + MIR3 SINE MIR 27 189 -19 323 310 70 25 chr1 31888050 31888208 -250305456 - MIR SINE MIR -76 186 22 431 315 43 6 chr1 31888789 31888951 -250304713 - MIR SINE MIR -76 186 19 756 207 9 73 chr1 31889514 31889732 -250303932 + LTR41 LTR ERVL 3 230 -565 418 260 138 6 chr1 31890074 31890255 -250303409 + LTR50 LTR ERVL 589 793 -2 10133 302 56 28 chr1 31890563 31892029 -250301635 + ERVL LTR ERVL 352 1774 -3990 2076 78 11 4 chr1 31892029 31892310 -250301354 + L1PB2 LINE L1 5867 6149 -2 10133 302 56 28 chr1 31892310 31894985 -250298679 + ERVL LTR ERVL 1774 4686 -1078 254 341 98 12 chr1 31895127 31895300 -250298364 - LTR41 LTR ERVL -80 693 506 8204 48 3 0 chr1 31895333 31896299 -250297365 - LTR5 LTR ERVK 0 969 1 494 204 136 8 chr1 31896613 31896745 -250296919 - LTR41 LTR ERVL -624 149 1 1892 303 37 15 chr1 31896745 31897396 -250296268 + ERVL LTR ERVL 4811 5475 -289 2348 84 0 0 chr1 31897406 31897714 -250295950 - AluY SINE Alu -3 308 1 1598 113 0 5 chr1 31897716 31897938 -250295726 - L1PA15 LINE L1 -2 6163 5943 474 219 70 16 chr1 31898249 31898377 -250295287 + LTR41 LTR ERVL 19 153 -620 2116 109 0 0 chr1 31898400 31898717 -250294947 - AluSx SINE Alu 0 317 1 276 203 43 0 chr1 31898722 31898791 -250294873 + LTR50 LTR ERVL 714 785 -10 283 179 75 15 chr1 31899002 31899069 -250294595 + MIR SINE MIR 23 93 -115 933 159 139 50 chr1 31899284 31899485 -250294179 + MER20 DNA MER1_type 1 219 0 358 341 39 0 chr1 31899487 31899616 -250294048 - MIR3 SINE MIR -68 140 7 195 299 45 30 chr1 31900301 31900435 -250293229 + L2 LINE L2 2909 3044 -228 361 312 105 72 chr1 31900435 31900881 -250292783 + LTR16C LTR ERVL 1 461 -30 253 338 60 40 chr1 31901049 31901200 -250292464 + L2 LINE L2 3117 3270 -2 377 159 0 127 chr1 31901856 31901982 -250291682 - MIR SINE MIR -119 143 34 227 230 79 31 chr1 31902100 31902222 -250291442 + MIR SINE MIR 33 192 -70 197 196 18 0 chr1 31902614 31902670 -250290994 + GA-rich Low_complexity Low_complexity 1 57 0 528 337 106 5 chr1 31902751 31902950 -250290714 + MIR SINE MIR 28 246 -16 2376 88 0 0 chr1 31903222 31903527 -250290137 + AluSx SINE Alu 1 305 -7 219 333 12 0 chr1 31903696 31903777 -250289887 - MIR SINE MIR -82 126 45 234 241 0 0 chr1 31904308 31904362 -250289302 + (CA)n Simple_repeat Simple_repeat 1 54 0 24 0 0 0 chr1 31904976 31905000 -250288664 + AT_rich Low_complexity Low_complexity 1 24 0 2241 103 0 0 chr1 31905514 31905814 -250287850 - AluSg SINE Alu -10 300 1 2076 139 7 0 chr1 31905821 31906284 -250287380 - AluSx SINE Alu 0 465 1 279 292 62 0 chr1 31906708 31906804 -250286860 - L2 LINE L2 -25 3247 3146 265 296 20 10 chr1 31906820 31906918 -250286746 - MIR SINE MIR -81 127 29 522 349 81 4 chr1 31907373 31907634 -250286030 - MLT1K LTR MaLR -290 298 18 343 314 17 0 chr1 31908923 31909041 -250284623 + L2 LINE L2 2933 3052 -220 189 111 0 0 chr1 31909075 31909102 -250284562 + L2 LINE L2 3136 3162 -110 527 344 18 9 chr1 31909227 31909454 -250284210 - MIR SINE MIR 0 262 34 542 239 72 36 chr1 31909462 31909629 -250284035 - L2 LINE L2 -19 3294 3122 1577 133 162 44 chr1 31909637 31909976 -250283688 - MLT1B LTR MaLR -2 388 10 272 304 179 5 chr1 31910014 31910198 -250283466 - L2 LINE L2 -280 3033 2818 346 308 36 0 chr1 31910275 31910417 -250283247 - MIR3 SINE MIR -37 171 20 2120 119 10 6 chr1 31910891 31911202 -250282462 + AluSx SINE Alu 1 312 0 288 282 38 38 chr1 31911204 31911335 -250282329 - MIR SINE MIR -129 133 3 353 183 0 0 chr1 31911375 31911435 -250282229 + MIR SINE MIR 90 149 -59 288 309 45 0 chr1 31911566 31911676 -250281988 - MIR SINE MIR -89 173 59 240 276 92 31 chr1 31911812 31912008 -250281656 + L2 LINE L2 2770 2977 -337 514 333 168 8 chr1 31912195 31912577 -250281087 + L2 LINE L2 2871 3313 0 691 231 104 44 chr1 31913713 31913964 -250279700 + MLT1K LTR MaLR 322 587 -1 347 209 198 0 chr1 31914218 31914309 -250279355 - MIR SINE MIR -113 149 41 760 272 104 21 chr1 31914440 31914815 -250278849 + L2 LINE L2 2002 2407 -907 421 213 46 2 chr1 31915023 31915150 -250278514 - L1MC3 LINE L1 0 7995 7679 2318 86 0 0 chr1 31915155 31915457 -250278207 - AluY SINE Alu -9 302 1 332 253 124 59 chr1 31915521 31915707 -250277957 + MER102a DNA MER1_type 116 313 -17 317 231 0 0 chr1 31915789 31915854 -250277810 - L2 LINE L2 -1 3271 3207 580 284 138 0 chr1 31916343 31916561 -250277103 - MIR SINE MIR -4 258 11 8098 48 11 0 chr1 31916584 31917542 -250276122 + LTR5 LTR ERVK 1 969 0 2789 92 2 20 chr1 31917611 31918014 -250275650 + L1MA2 LINE L1 5909 6304 0 184 378 14 0 chr1 31918028 31918102 -250275562 + MIR SINE MIR 186 260 -2 265 203 34 0 chr1 31918758 31918817 -250274847 + MIR3 SINE MIR 108 168 -40 287 325 24 16 chr1 31919907 31920030 -250273634 + MIR SINE MIR 21 144 -64 888 153 0 0 chr1 31920101 31920232 -250273432 - FLAM_C SINE Alu -2 131 1 354 340 93 34 chr1 31920300 31920591 -250273073 - L2 LINE L2 0 3313 3006 514 261 0 9 chr1 31920621 31920736 -250272928 + MER81 DNA DNA 1 114 0 935 235 38 0 chr1 31920850 31921063 -250272601 - MIR SINE MIR -29 233 13 263 295 10 115 chr1 31921087 31921287 -250272377 - MIR SINE MIR 0 262 84 797 147 0 33 chr1 31922435 31922619 -250271045 + (TTCC)n Simple_repeat Simple_repeat 2 179 0 640 89 20 0 chr1 31922617 31922718 -250270946 + (TC)n Simple_repeat Simple_repeat 2 104 0 * 192 162 27 0 chr1 31923117 31923154 -250270510 + MIR3 SINE MIR 168 205 -3 254 248 31 47 chr1 31923628 31923757 -250269907 - L2 LINE L2 -310 2962 2836 2078 273 78 31 chr1 31924354 31925007 -250268657 - MER115 DNA AcHobo -5 688 5 1864 154 15 94 chr1 31925519 31925921 -250267743 - MLT1A2 LTR MaLR -4 370 1 239 143 0 0 chr1 31926098 31926140 -250267524 + Alu SINE Alu 259 300 -1 675 337 16 0 chr1 31926403 31926646 -250267018 - MIR SINE MIR -14 248 2 550 223 108 73 chr1 31927443 31927724 -250265940 - MLT1H LTR MaLR -197 352 21 252 318 84 19 chr1 31927745 31927852 -250265812 + MIR3 SINE MIR 88 201 -7 478 320 115 8 chr1 31928798 31929032 -250264632 - MIR SINE MIR -1 261 3 4274 139 27 14 chr1 31929917 31930560 -250263104 - L1MA4 LINE L1 -159 6323 5667 1658 107 5 0 chr1 31930560 31930775 -250262889 - AluSg/x SINE Alu -18 294 79 4274 139 27 14 chr1 31930775 31930902 -250262762 - L1MA4 LINE L1 -815 5667 5543 627 126 19 0 chr1 31930902 31931005 -250262659 - AluYb8 SINE Alu 0 318 214 15026 174 28 26 chr1 31931008 31933328 -250260336 - L1MA4 LINE L1 -781 5547 3234 3688 54 2 5 chr1 31933328 31933773 -250259891 - MLT2A1 LTR ERVL 0 444 1 15026 174 28 26 chr1 31933773 31934425 -250259239 - L1MA4 LINE L1 -3094 3234 2585 2071 109 43 23 chr1 31934425 31934728 -250258936 - AluSg SINE Alu -1 309 1 15026 174 28 26 chr1 31934728 31934877 -250258787 - L1MA4 LINE L1 -3743 2585 2438 2347 109 0 3 chr1 31934877 31935181 -250258483 - AluSx SINE Alu -9 303 1 15026 174 28 26 chr1 31935181 31937589 -250256075 - L1MA4 LINE L1 -3890 2438 2 289 337 107 18 chr1 31937672 31937841 -250255823 - MER5A DNA MER1_type -4 185 2 556 289 108 54 chr1 31937901 31938309 -250255355 + MLT1J2 LTR MaLR 20 449 -1 1094 161 0 0 chr1 31938398 31938559 -250255105 + AluSp SINE Alu 136 296 -17 1756 180 0 47 chr1 31938606 31938923 -250254741 - AluJb SINE Alu -10 302 1 22 70 0 0 chr1 31939176 31939219 -250254445 + AT_rich Low_complexity Low_complexity 1 43 0 489 273 8 52 chr1 31939614 31939794 -250253870 + MIR3 SINE MIR 15 188 -20 509 316 87 10 chr1 31940046 31940252 -250253412 - MIR SINE MIR -6 256 35 550 237 167 32 chr1 31941462 31941648 -250252016 + MIR SINE MIR 20 230 -32 275 304 127 57 chr1 31942102 31942385 -250251279 - L2 LINE L2 -2 3270 2968 623 181 136 4 chr1 31942392 31942591 -250251073 - MLT1H1 LTR MaLR 0 555 292 277 277 24 0 chr1 31942628 31942711 -250250953 - MLT1H1 LTR MaLR -304 286 202 3199 145 23 33 chr1 31942713 31942893 -250250771 + MER49 LTR ERV1 1 181 -742 2372 84 0 7 chr1 31942893 31943192 -250250472 - AluY SINE Alu -14 297 1 3199 145 23 33 chr1 31943192 31943584 -250250080 + MER49 LTR ERV1 181 567 -356 1121 212 9 0 chr1 31943580 31943802 -250249862 + MER49 LTR ERV1 686 909 -14 * 1884 154 7 10 chr1 31943802 31944095 -250249569 - AluJo SINE Alu -16 296 5 609 292 39 0 chr1 31944145 31944323 -250249341 - MLT1H1 LTR MaLR -370 185 1 285 331 24 16 chr1 31944486 31944613 -250249051 - L2 LINE L2 -212 3060 2933 222 281 0 24 chr1 31944914 31944996 -250248668 - L2 LINE L2 -685 2629 2550 721 239 109 38 chr1 31945012 31945250 -250248414 - MIR SINE MIR -2 260 6 302 247 124 0 chr1 31945594 31945683 -250247981 - MIR SINE MIR -88 120 21 702 237 114 27 chr1 31945691 31945766 -250247898 + MIR SINE MIR 19 86 -176 2689 97 8 0 chr1 31945766 31946137 -250247527 - THE1C LTR MaLR -1 374 1 702 237 114 27 chr1 31946137 31946280 -250247384 + MIR SINE MIR 86 256 -6 960 279 48 4 chr1 31946321 31946550 -250247114 + MIR SINE MIR 14 252 -10 619 230 112 1 chr1 31946876 31947071 -250246593 - MIR SINE MIR -20 242 29 354 227 136 9 chr1 31947342 31947452 -250246212 + MIR3 SINE MIR 40 163 -45 355 233 135 61 chr1 31947483 31947646 -250246018 - MIR SINE MIR -13 249 75 271 323 64 32 chr1 31948183 31948403 -250245261 + MIR SINE MIR 14 240 -22 238 325 36 12 chr1 31948603 31948686 -250244978 - MIR SINE MIR -70 192 108 482 318 77 0 chr1 31948792 31949012 -250244652 - MIR SINE MIR -12 250 14 241 270 30 157 chr1 31949931 31950112 -250243552 + L2 LINE L2 3072 3220 -52 477 110 0 0 chr1 31950112 31950185 -250243479 + (TGAA)n Simple_repeat Simple_repeat 4 76 0 241 270 30 157 chr1 31950185 31950233 -250243431 + L2 LINE L2 3220 3272 0 642 258 58 51 chr1 31950248 31950523 -250243141 + L3 LINE CR1 1251 1527 -50 285 320 8 31 chr1 31950827 31950955 -250242709 + MIR SINE MIR 24 148 -60 362 277 9 45 chr1 31950995 31951107 -250242557 + MIR SINE MIR 80 187 -75 416 135 14 0 chr1 31951158 31951232 -250242432 + CT-rich Low_complexity Low_complexity 3 77 0 2208 108 26 10 chr1 31951278 31951583 -250242081 + AluSg SINE Alu 1 310 0 252 86 0 0 chr1 31952487 31952522 -250241142 + (TC)n Simple_repeat Simple_repeat 2 36 0 365 0 22 0 chr1 31952523 31952568 -250241096 + (CA)n Simple_repeat Simple_repeat 2 47 0 225 299 108 19 chr1 31952961 31953118 -250240546 - MIR SINE MIR -61 147 20 587 240 112 52 chr1 31953765 31953998 -250239666 + MIR SINE MIR 16 262 0 536 260 97 7 chr1 31954360 31954514 -250239150 - MIR3 SINE MIR -28 180 13 187 423 0 0 chr1 31955301 31955379 -250238285 + MIR3 SINE MIR 82 159 -49 272 271 0 0 chr1 31955521 31955591 -250238073 + (TAA)n Simple_repeat Simple_repeat 2 71 0 365 253 58 0 chr1 31955651 31955738 -250237926 - MIR SINE MIR -44 218 127 443 242 84 140 chr1 31955763 31956034 -250237630 + LTR41 LTR ERVL 435 683 -90 955 187 6 6 chr1 31956034 31956200 -250237464 - FRAM SINE Alu 0 166 1 443 242 84 140 chr1 31956200 31956284 -250237380 + LTR41 LTR ERVL 683 770 -3 345 175 42 31 chr1 31956339 31956432 -250237232 - MER58 DNA MER1_type -109 106 1 2061 119 35 91 chr1 31956448 31956876 -250236788 + MSTA LTR MaLR 1 404 -24 2674 129 2 0 chr1 31956887 31957298 -250236366 + MSTA-int LTR MaLR 1 412 -1239 13302 36 2 0 chr1 31957311 31959659 -250234005 - L1PA5 LINE L1 -11 6143 3793 357 250 12 101 chr1 31959806 31959974 -250233690 - MLT1J LTR MaLR -203 308 156 367 301 34 41 chr1 31960227 31960373 -250233291 - L1ME4a LINE L1 -21 6100 5956 624 325 26 18 chr1 31960379 31960720 -250232944 - L1ME4a LINE L1 -213 5908 5565 325 150 0 33 chr1 31961727 31961811 -250231853 - AluJ/FRAM SINE Alu 0 308 227 528 202 40 16 chr1 31961833 31961957 -250231707 + MLT1E LTR MaLR 46 172 -421 916 278 92 27 chr1 31962070 31962441 -250231223 + MLT1E LTR MaLR 199 593 0 3872 177 37 55 chr1 31962502 31963693 -250229971 + L1MB8 LINE L1 4957 6145 -33 605 207 173 74 chr1 31963693 31963964 -250229700 + MLT1K LTR MaLR 290 587 -1 403 311 44 17 chr1 31963997 31964177 -250229487 - MIR SINE MIR -55 207 23 1156 185 41 53 chr1 31964661 31965017 -250228647 + MLT2D LTR ERVL 66 414 0 232 179 330 9 chr1 31965096 31965208 -250228456 + LTR16A1 LTR ERVL 305 452 -5 412 351 34 10 chr1 31965298 31965591 -250228073 + HERV16 LTR ERVL 117 416 -4580 826 326 74 35 chr1 31965621 31966364 -250227300 + HERV16 LTR ERVL 461 1232 -3764 2260 226 57 16 chr1 31966576 31967431 -250226233 + L1ME1 LINE L1 5145 5981 -185 227 316 26 26 chr1 31968323 31968437 -250225227 - MIR SINE MIR -20 242 129 290 233 122 56 chr1 31968927 31969084 -250224580 - MIR SINE MIR -62 146 1 275 235 0 15 chr1 31969202 31969270 -250224394 - MER96 DNA MER1_type? -26 149 83 278 311 123 9 chr1 31969865 31969971 -250223693 - MIR3 SINE MIR -9 199 82 211 262 95 19 chr1 31970626 31970735 -250222929 + MIR SINE MIR 12 136 -72 204 225 0 0 chr1 31971299 31971339 -250222325 + (TG)n Simple_repeat Simple_repeat 2 41 0 210 326 31 20 chr1 31972684 31972782 -250220882 - MIR3 SINE MIR -28 180 82 237 91 0 0 chr1 31972994 31973027 -250220637 - L2 LINE L2 -223 3049 3017 3701 104 5 61 chr1 31973490 31974048 -250219616 + MER1A DNA MER1_type 1 527 0 457 237 23 92 chr1 31974213 31974344 -250219320 + MIR SINE MIR 21 142 -120 337 235 56 112 chr1 31974421 31974600 -250219064 - MIR SINE MIR -4 258 90 663 267 83 5 chr1 31974602 31974819 -250218845 + L1MEc LINE L1 134 367 -6029 893 130 0 8 chr1 31974857 31974988 -250218676 + FRAM SINE Alu 35 164 -12 2739 275 69 3 chr1 31974999 31975918 -250217746 + L1MEc LINE L1 398 1376 -5020 2422 179 73 9 chr1 31975936 31976496 -250217168 + L1M4 LINE L1 4615 5210 -936 915 261 51 1 chr1 31976677 31976924 -250216740 - MIR SINE MIR 0 262 7 273 318 58 52 chr1 31976963 31977117 -250216547 - MIR SINE MIR -14 248 94 207 302 0 0 chr1 31978349 31978402 -250215262 + MIR3 SINE MIR 144 196 -12 469 241 48 8 chr1 31978609 31978793 -250214871 + MIR3 SINE MIR 5 192 -68 298 246 86 13 chr1 31979188 31979298 -250214366 + MIR SINE MIR 61 175 -78 273 248 8 94 chr1 31979323 31979440 -250214224 - L2 LINE L2 -6 3307 3201 259 278 33 0 chr1 31980480 31980570 -250213094 + MIR SINE MIR 100 192 -70 412 324 152 5 chr1 31980917 31981121 -250212543 - MIR SINE MIR -9 253 20 193 224 69 0 chr1 31981270 31981328 -250212336 + MIR SINE MIR 84 145 -63 486 363 42 29 chr1 31981375 31981615 -250212049 + MIR SINE MIR 8 250 -12 495 273 43 0 chr1 31982200 31982339 -250211325 - MIR3 SINE MIR -59 149 5 315 332 21 10 chr1 31982435 31982628 -250211036 - L2 LINE L2 -526 2788 2594 384 260 123 26 chr1 31982682 31982836 -250210828 - MIR SINE MIR -60 202 34 1090 245 95 25 chr1 31983177 31983545 -250210119 - MLT1I LTR MaLR 0 409 16 1131 279 82 43 chr1 31983555 31984513 -250209151 + L2 LINE L2 2309 3300 -13 207 0 0 0 chr1 31984513 31984536 -250209128 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 315 138 62 0 chr1 31985386 31985451 -250208213 - L1P LINE L1 -4215 1931 1863 * 4697 112 3 3 chr1 31985447 31986128 -250207536 - L1P LINE L1 -5465 681 1 2295 201 92 53 chr1 31986130 31986803 -250206861 + MST-int LTR MaLR 400 1098 -553 3466 293 65 39 chr1 31986803 31988110 -250205554 + ERVL LTR ERVL 1955 3295 -2469 493 265 61 44 chr1 31988216 31988397 -250205267 + MIR SINE MIR 2 185 -77 574 290 32 14 chr1 31988421 31988638 -250205026 - MIR SINE MIR -37 225 5 326 265 53 68 chr1 31988736 31988868 -250204796 + MER5A DNA MER1_type 57 186 -3 206 372 18 35 chr1 31988930 31989043 -250204621 + MIR SINE MIR 43 153 -55 212 237 0 0 chr1 31989088 31989126 -250204538 + MIR SINE MIR 50 87 -175 2464 86 0 0 chr1 31989128 31989429 -250204235 - AluY SINE Alu -10 301 1 369 269 56 0 chr1 31989430 31989538 -250204126 + MIR SINE MIR 72 185 -77 348 333 62 15 chr1 31989585 31989780 -250203884 + MIR SINE MIR 15 218 -44 21 36 0 0 chr1 31989797 31989825 -250203839 + AT_rich Low_complexity Low_complexity 1 28 0 305 353 69 6 chr1 31990829 31991002 -250202662 + MIR SINE MIR 51 234 -28 247 279 19 67 chr1 31991376 31991480 -250202184 - HAL1b LINE L1 -54 1294 1196 505 203 16 24 chr1 31992211 31992334 -250201330 - MIR SINE MIR -113 149 28 2308 69 39 20 chr1 31992784 31993089 -250200575 + AluY SINE Alu 1 311 0 439 251 69 35 chr1 31993282 31993513 -250200151 + L1ME4a LINE L1 5830 6068 -53 537 178 212 14 chr1 31993556 31993702 -250199962 - MIR SINE MIR -44 218 44 380 323 36 6 chr1 31994521 31994688 -250198976 - MIR SINE MIR -70 192 21 487 306 103 25 chr1 31994799 31995080 -250198584 + L2 LINE L2 3010 3312 -1 362 260 96 21 chr1 31995105 31995252 -250198412 - MIR SINE MIR -62 146 42 346 283 80 0 chr1 31996102 31996215 -250197449 - MIR SINE MIR -63 145 24 696 268 78 42 chr1 31996985 31997291 -250196373 - L2 LINE L2 -2 3311 2995 520 330 30 13 chr1 31997383 31997616 -250196048 + L2 LINE L2 2584 2820 -494 312 375 76 11 chr1 31997619 31997883 -250195781 + L2 LINE L2 2985 3265 -7 375 143 0 48 chr1 31999062 31999146 -250194518 + MLT1H-int LTR MaLR 1656 1735 0 438 169 52 0 chr1 31999146 31999223 -250194441 + MSTB1 LTR MaLR 1 81 -376 * 1107 153 41 29 chr1 31999213 31999455 -250194209 + MSTB1 LTR MaLR 184 428 -4 1402 258 26 54 chr1 31999460 31999899 -250193765 + MLT1H LTR MaLR 57 483 -66 1993 132 0 21 chr1 31999899 32000224 -250193440 - AluSx SINE Alu 0 319 1 1402 258 26 54 chr1 32000224 32000280 -250193384 + MLT1H LTR MaLR 483 539 -10 379 299 90 6 chr1 32000280 32000447 -250193217 - MIR SINE MIR -60 202 22 438 263 114 34 chr1 32000473 32000648 -250193016 + MER117 DNA MER1_type 3 191 -6 1291 270 128 63 chr1 32001905 32002548 -250191116 + HAL1b LINE L1 89 688 -660 2005 137 23 29 chr1 32002548 32002855 -250190809 + AluJo SINE Alu 2 306 -6 1291 270 128 63 chr1 32002855 32003387 -250190277 + HAL1b LINE L1 688 1341 -7 431 189 32 11 chr1 32003875 32003970 -250189694 - MIR SINE MIR -146 116 20 2371 100 3 0 chr1 32004100 32004400 -250189264 + AluSx SINE Alu 1 301 -11 236 286 87 48 chr1 32004598 32004724 -250188940 - L2 LINE L2 0 3272 3142 384 314 73 20 chr1 32004859 32005104 -250188560 - L2 LINE L2 -439 2875 2618 298 318 39 16 chr1 32005653 32005782 -250187882 - MIR SINE MIR -52 210 79 247 328 26 45 chr1 32005891 32006045 -250187619 - MIR SINE MIR -60 202 56 248 180 79 79 chr1 32006770 32006859 -250186805 + MIR SINE MIR 43 131 -77 309 267 58 0 chr1 32007211 32007297 -250186367 - MIR3 SINE MIR -6 202 112 665 281 158 42 chr1 32007354 32007853 -250185811 - MLT1K LTR MaLR -16 572 16 204 234 221 48 chr1 32007884 32008029 -250185635 - MIR SINE MIR -20 242 73 280 288 65 7 chr1 32008063 32008202 -250185462 - LTR16C LTR ERVL -154 337 191 2393 81 0 0 chr1 32008692 32008999 -250184665 + AluSx SINE Alu 1 307 0 529 282 66 42 chr1 32009067 32009354 -250184310 + LTR47B LTR ERVL 1 294 -149 978 188 0 70 chr1 32009359 32009572 -250184092 + LTR47B LTR ERVL 246 443 0 188 67 33 0 chr1 32009594 32009624 -250184040 + (TGGGGG)n Simple_repeat Simple_repeat 3 33 0 1752 123 119 0 chr1 32009764 32010033 -250183631 - AluSx SINE Alu -11 301 1 438 273 98 0 chr1 32010820 32010963 -250182701 + MIR SINE MIR 106 262 0 439 243 92 32 chr1 32012054 32012239 -250181425 + MLT1G LTR MaLR 388 583 -7 364 276 126 45 chr1 32012311 32012510 -250181154 + MIR SINE MIR 27 241 -21 278 203 14 14 chr1 32012649 32012718 -250180946 - L2 LINE L2 -31 3282 3214 225 358 12 0 chr1 32013472 32013553 -250180111 - MIR SINE MIR 0 262 181 232 292 14 0 chr1 32013563 32013635 -250180029 + MER94 DNA DNA 4 76 -58 340 339 58 26 chr1 32013655 32013968 -250179696 + L2 LINE L2 2991 3313 0 203 200 154 0 chr1 32014265 32014330 -250179334 + MIR SINE MIR 62 136 -72 377 309 24 0 chr1 32014766 32014889 -250178775 - L2 LINE L2 -13 3259 3134 3777 207 58 14 chr1 32015064 32016229 -250177435 - L1 LINE L1 -2361 4487 3168 833 102 0 90 chr1 32016222 32016499 -250177165 - L1MDb LINE L1 -5165 1242 783 * 504 216 17 26 chr1 32017732 32017848 -250175816 + MER94 DNA DNA 20 134 0 203 276 35 35 chr1 32017965 32018052 -250175612 - L2 LINE L2 0 3272 3186 952 278 196 11 chr1 32018889 32019271 -250174393 - MLT1K LTR MaLR 0 588 136 325 311 115 0 chr1 32020049 32020197 -250173467 - MIR SINE MIR -6 256 92 928 268 80 27 chr1 32020242 32020760 -250172904 + L2 LINE L2 2756 3300 -13 191 236 127 0 chr1 32020770 32020825 -250172839 + MIR SINE MIR 131 192 -70 693 284 109 31 chr1 32021084 32021433 -250172231 + MLT1I LTR MaLR 34 409 0 247 316 25 0 chr1 32021609 32021688 -250171976 + MIR SINE MIR 76 156 -106 407 201 7 89 chr1 32022455 32022550 -250171114 + MLT1J1 LTR MaLR 56 138 -271 1930 201 57 5 chr1 32022550 32022954 -250170710 - MSTB LTR MaLR 0 426 2 407 201 7 89 chr1 32022954 32022996 -250170668 + MLT1J1 LTR MaLR 138 182 -227 310 229 2 77 chr1 32023038 32023164 -250170500 + MLT1J2 LTR MaLR 370 450 0 365 274 71 0 chr1 32023174 32023287 -250170377 + L2 LINE L2 3193 3313 0 1572 176 115 40 chr1 32023873 32024298 -250169366 + MSTB2 LTR MaLR 1 457 0 656 265 44 5 chr1 32024501 32024705 -250168959 + MIR SINE MIR 3 214 -48 1800 175 34 11 chr1 32024953 32025331 -250168333 - MLT1B LTR MaLR 0 390 4 441 322 17 43 chr1 32025440 32025673 -250167991 - L2 LINE L2 -4 3268 3042 209 378 20 0 chr1 32025822 32025920 -250167744 - MIR SINE MIR -66 142 43 394 342 19 19 chr1 32026652 32026807 -250166857 - L3 LINE CR1 -142 1435 1281 309 230 40 0 chr1 32027265 32027339 -250166325 - MIR SINE MIR -90 118 42 489 124 26 88 chr1 32027852 32027914 -250165750 + MSTB2 LTR MaLR 1 54 -403 2388 94 0 7 chr1 32027914 32028221 -250165443 + AluY SINE Alu 1 305 -6 489 124 26 88 chr1 32028221 32028271 -250165393 + MSTB2 LTR MaLR 54 106 -351 231 188 0 59 chr1 32228295 32228396 -249965268 + C-rich Low_complexity Low_complexity 4 98 0 1624 104 0 30 chr1 32228847 32229078 -249964586 + AluSg/x SINE Alu 88 311 -1 1449 175 62 0 chr1 32229079 32229370 -249964294 + MER41C LTR ERV1 246 554 0 21 0 0 0 chr1 32229467 32229488 -249964176 + GC_rich Low_complexity Low_complexity 1 21 0 226 260 47 64 chr1 32229520 32229755 -249963909 - L2 LINE L2 -227 3045 2815 327 301 122 13 chr1 32229810 32229966 -249963698 - MIR SINE MIR -4 258 86 215 279 23 101 chr1 32230075 32230204 -249963460 - L2 LINE L2 -94 3219 3101 661 247 40 6 chr1 32230835 32231009 -249962655 + MIR SINE MIR 59 238 -24 241 295 70 0 chr1 32232479 32232608 -249961056 + L2 LINE L2 2836 2973 -299 210 335 53 41 chr1 32232996 32233166 -249960498 - MIR3 SINE MIR -7 201 30 339 323 22 62 chr1 32233307 32233533 -249960131 - MIR SINE MIR -40 222 6 283 309 85 48 chr1 32233807 32233995 -249959669 + MIR SINE MIR 1 195 -67 * 311 250 0 12 chr1 32233992 32234072 -249959592 - MIR SINE MIR -126 136 58 340 246 25 57 chr1 32234081 32234142 -249959522 + MIR SINE MIR 43 100 -162 2320 90 3 3 chr1 32234142 32234432 -249959232 - AluSg SINE Alu -20 290 1 340 246 25 57 chr1 32234432 32234492 -249959172 + MIR SINE MIR 100 160 -102 687 12 0 0 chr1 32235179 32235259 -249958405 + (AATAG)n Simple_repeat Simple_repeat 1 80 0 387 282 54 100 chr1 32235401 32235660 -249958004 - L2 LINE L2 -19 3253 3007 723 259 211 6 chr1 32235661 32235978 -249957686 + L2 LINE L2 2932 3313 0 252 228 0 0 chr1 32235995 32236052 -249957612 - FAM SINE Alu 0 179 123 386 271 31 0 chr1 32237782 32237911 -249955753 - Zaphod DNA AcHobo -10 4021 3889 723 261 44 26 chr1 32239694 32239920 -249953744 - MIR SINE MIR -27 235 6 362 244 47 58 chr1 32239923 32240095 -249953569 - L3 LINE CR1 -77 1500 1331 522 275 47 6 chr1 32240753 32240924 -249952740 - MIR SINE MIR -78 184 7 182 65 97 0 chr1 32240935 32240966 -249952698 - MIR3 SINE MIR -15 193 160 212 296 19 0 chr1 32241029 32241083 -249952581 + MER5B DNA MER1_type 1 55 -123 418 141 0 14 chr1 32241088 32241159 -249952505 - L1MD3 LINE L1 -1737 6258 6189 418 266 56 7 chr1 32241160 32241303 -249952361 + MIR SINE MIR 35 184 -78 350 221 18 145 chr1 32241312 32241477 -249952187 + MER5B DNA MER1_type 1 133 -45 6951 163 67 46 chr1 32241492 32243018 -249950646 + L1MC3 LINE L1 5486 7049 -736 478 0 32 0 chr1 32243018 32243080 -249950584 + (TAGA)n Simple_repeat Simple_repeat 1 64 0 6951 163 67 46 chr1 32243080 32243133 -249950531 + L1MC3 LINE L1 7049 7099 -686 4010 205 47 15 chr1 32243129 32244105 -249949559 - L1MEc LINE L1 -2824 4117 3111 * 827 193 28 41 chr1 32244104 32244177 -249949487 - L1MEc LINE L1 -5594 1528 1456 * 1502 224 100 3 chr1 32244177 32244538 -249949126 - MSTD LTR MaLR 0 396 1 827 193 28 41 chr1 32244538 32244682 -249948982 - L1MEc LINE L1 -5666 1456 1314 870 310 57 6 chr1 32244697 32245029 -249948635 - L1MEc LINE L1 -6013 1109 761 199 182 327 0 chr1 32245061 32245116 -249948548 - MIR SINE MIR -55 153 81 325 280 102 0 chr1 32245996 32246114 -249947550 - L2 LINE L2 -5 3267 3138 1095 254 126 20 chr1 32246926 32247332 -249946332 - L1MEc LINE L1 -5956 467 19 332 191 0 59 chr1 32247436 32247504 -249946160 - L2 LINE L2 -1 3312 3249 330 253 30 20 chr1 32247546 32247645 -249946019 - MIR SINE MIR -73 135 36 812 311 63 31 chr1 32247806 32248294 -249945370 + L1ME4a LINE L1 5475 5978 -143 318 274 250 24 chr1 32248338 32248506 -249945158 - MIR SINE MIR -18 244 39 330 26 0 0 chr1 32249710 32249749 -249943915 + (TG)n Simple_repeat Simple_repeat 2 40 0 426 261 50 56 chr1 32249753 32249933 -249943731 - MIR SINE MIR -55 207 29 1234 345 48 20 chr1 32250471 32251415 -249942249 - ERVL LTR ERVL -628 5136 4167 854 229 91 5 chr1 32251601 32251811 -249941853 - MIR SINE MIR -18 244 17 463 284 82 58 chr1 32252048 32252291 -249941373 - L2 LINE L2 -17 3255 3007 243 296 88 40 chr1 32252273 32252398 -249941266 + L3 LINE CR1 1444 1574 -3 * 278 259 86 0 chr1 32253142 32253223 -249940441 + MIR SINE MIR 45 132 -76 621 286 108 0 chr1 32253345 32253548 -249940116 - MIR SINE MIR -35 227 3 2296 108 0 19 chr1 32253626 32253941 -249939723 - AluSx SINE Alu -3 309 1 393 269 8 31 chr1 32253996 32254126 -249939538 + L2 LINE L2 2919 3045 -227 2016 106 3 21 chr1 32254943 32255226 -249938438 + AluSp SINE Alu 1 278 -35 183 333 121 0 chr1 32256056 32256155 -249937509 + MIR SINE MIR 117 227 -35 233 143 20 61 chr1 32256343 32256392 -249937272 - MIR SINE MIR -55 153 107 506 284 71 36 chr1 32256392 32256617 -249937047 + MIR SINE MIR 4 236 -26 233 100 50 17 chr1 32256644 32256704 -249936960 + (TAA)n Simple_repeat Simple_repeat 3 64 0 2424 100 0 3 chr1 32257192 32257502 -249936162 + AluSg SINE Alu 1 309 -1 2345 102 0 3 chr1 32258576 32258881 -249934783 - AluSq SINE Alu -9 304 1 742 256 31 15 chr1 32258926 32259121 -249934543 + MIR3 SINE MIR 11 208 0 1542 129 209 12 chr1 32260111 32260437 -249933227 + MSTA LTR MaLR 1 390 -38 191 333 51 8 chr1 32260441 32260558 -249933106 - L2 LINE L2 -39 3233 3112 427 250 134 43 chr1 32260636 32260800 -249932864 - MIR SINE MIR -21 241 63 549 318 153 7 chr1 32261092 32261366 -249932298 + MLT1K LTR MaLR 86 399 -189 231 328 0 0 chr1 32261380 32261441 -249932223 + (TG)n Simple_repeat Simple_repeat 1 61 0 276 263 95 11 chr1 32261558 32261653 -249932011 + MLT1K LTR MaLR 447 549 -39 533 210 48 8 chr1 32262115 32262239 -249931425 - MIR SINE MIR -120 142 14 211 242 33 44 chr1 32262280 32262371 -249931293 - L2 LINE L2 -190 3082 2993 396 214 270 0 chr1 32264115 32264241 -249929423 + MER5A DNA MER1_type 9 168 -21 231 258 32 16 chr1 32264304 32264366 -249929298 + MIR SINE MIR 86 148 -114 * 364 290 40 32 chr1 32264365 32264489 -249929175 - L2 LINE L2 0 3272 3148 385 193 18 0 chr1 32264685 32264766 -249928898 - MIR SINE MIR -60 148 65 349 281 37 22 chr1 32264945 32265080 -249928584 + MIR SINE MIR 58 194 -68 287 336 122 17 chr1 32265112 32265457 -249928207 + L2 LINE L2 2928 3308 -5 494 233 139 67 chr1 32265479 32265864 -249927800 - MLT1J2 LTR MaLR 0 450 75 335 188 0 16 chr1 32266374 32266438 -249927226 - MIR SINE MIR -114 148 86 340 313 35 35 chr1 32266991 32267135 -249926529 + MIR SINE MIR 24 167 -95 1600 224 12 50 chr1 32267238 32267738 -249925926 - L1ME1 LINE L1 -3 6232 5752 * 6114 249 72 12 chr1 32267737 32270646 -249923018 - L1ME1 LINE L1 -3141 3074 27 399 321 28 0 chr1 32271389 32271498 -249922166 - MIR SINE MIR -115 147 36 4835 159 58 10 chr1 32271646 32272560 -249921104 + L1MB3 LINE L1 24 981 -5403 828 210 78 72 chr1 32272564 32272616 -249921048 - MSTC LTR MaLR 0 428 378 426 20 0 0 chr1 32272616 32272667 -249920997 + (TATATG)n Simple_repeat Simple_repeat 2 52 0 2110 137 3 0 chr1 32272667 32272959 -249920705 - AluSx SINE Alu -19 293 1 828 210 78 72 chr1 32272959 32273292 -249920372 - MSTC LTR MaLR -49 379 3 3159 155 58 5 chr1 32273293 32273925 -249919739 + L1MB3 LINE L1 982 1647 -4737 9554 203 45 17 chr1 32273932 32276763 -249916901 + L1MB3 LINE L1 2801 5747 -672 342 0 0 0 chr1 32276763 32276801 -249916863 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 9554 203 45 17 chr1 32276801 32277492 -249916172 + L1MB3 LINE L1 5747 6417 -2 473 239 0 8 chr1 32277768 32277885 -249915779 - MLT1H LTR MaLR -395 154 39 6645 27 0 0 chr1 32277922 32278726 -249914938 - L1PA2 LINE L1 0 6155 5352 347 243 81 104 chr1 32278771 32278944 -249914720 + L2 LINE L2 2926 3094 -178 213 265 0 0 chr1 32279105 32279154 -249914510 + GA-rich Low_complexity Low_complexity 2 50 0 909 208 44 35 chr1 32279777 32280003 -249913661 - MIR SINE MIR -23 239 12 848 289 115 32 chr1 32280024 32280402 -249913262 - L2 LINE L2 -3 3310 2884 2674 99 39 51 chr1 32280402 32280443 -249913221 - MSTA LTR MaLR 0 428 388 2187 101 18 3 chr1 32280443 32280752 -249912912 + AluSx SINE Alu 1 313 0 2674 99 39 51 chr1 32280752 32281141 -249912523 - MSTA LTR MaLR -40 388 1 848 289 115 32 chr1 32281141 32281230 -249912434 - L2 LINE L2 -429 2884 2804 984 247 119 31 chr1 32281244 32281721 -249911943 + LTR33 LTR ERVL 1 519 -2 511 298 53 14 chr1 32281742 32281950 -249911714 - L2 LINE L2 -534 2780 2565 462 221 87 16 chr1 32282567 32282665 -249910999 + MIR SINE MIR 92 202 -60 2598 137 21 19 chr1 32282665 32283090 -249910574 + MSTB LTR MaLR 1 426 0 462 221 87 16 chr1 32283090 32283118 -249910546 + MIR SINE MIR 202 227 -35 548 282 67 50 chr1 32284112 32284470 -249909194 - L2 LINE L2 -2 3311 2948 246 286 0 0 chr1 32284705 32284761 -249908903 + MIR3 SINE MIR 142 197 -11 316 322 8 0 chr1 32285763 32285881 -249907783 - MLT1K LTR MaLR -328 260 142 282 303 61 0 chr1 32286310 32286409 -249907255 + L2 LINE L2 3205 3309 -4 192 196 22 0 chr1 32286554 32286600 -249907064 + MIR SINE MIR 98 144 -118 225 0 0 0 chr1 32286836 32286861 -249906803 + (A)n Simple_repeat Simple_repeat 1 25 0 1141 284 47 21 chr1 32287276 32287702 -249905962 + L2 LINE L2 2830 3266 -47 213 265 131 37 chr1 32287992 32288113 -249905551 - MIR SINE MIR -65 143 10 21 0 0 0 chr1 32288178 32288199 -249905465 + AT_rich Low_complexity Low_complexity 1 21 0 323 239 0 0 chr1 32288253 32288320 -249905344 - MIR SINE MIR -84 178 112 2221 98 0 41 chr1 32288459 32288776 -249904888 + AluSx SINE Alu 1 304 -8 186 250 0 21 chr1 32289554 32289602 -249904062 - MIR SINE MIR 0 262 216 * 222 176 0 0 chr1 32289574 32289608 -249904056 - L2 LINE L2 -25 3288 3255 266 202 12 60 chr1 32289625 32289709 -249903955 - MER116 DNA Mariner 0 80 1 234 184 0 0 chr1 32289761 32289799 -249903865 - MIR SINE MIR -62 146 109 2076 122 42 50 chr1 32290432 32290810 -249902854 + THE1C LTR MaLR 1 375 0 848 166 36 57 chr1 32290955 32291148 -249902516 + MER53 DNA DNA 1 189 0 241 156 22 0 chr1 32291365 32291410 -249902254 - MER58A DNA MER1_type -1 223 178 52 58 0 0 chr1 32291415 32291502 -249902162 + AT_rich Low_complexity Low_complexity 1 87 0 864 222 11 5 chr1 32291502 32291687 -249901977 - MER58A DNA MER1_type -37 187 2 189 348 11 34 chr1 32291815 32291904 -249901760 + MIR3 SINE MIR 68 154 -54 548 261 55 6 chr1 32292923 32293088 -249900576 + MIR SINE MIR 70 242 -20 185 370 167 10 chr1 32293116 32293308 -249900356 - MIR SINE MIR -15 247 26 283 171 26 0 chr1 32293328 32293404 -249900260 + CT-rich Low_complexity Low_complexity 1 78 0 296 276 9 21 chr1 32293635 32293741 -249899923 + MIR SINE MIR 10 113 -95 616 288 83 38 chr1 32293933 32294305 -249899359 + MLT1I LTR MaLR 21 409 0 357 119 24 24 chr1 32294423 32294507 -249899157 + GA-rich Low_complexity Low_complexity 1 84 0 434 304 73 50 chr1 32294546 32294766 -249898898 + MIR SINE MIR 9 233 -29 232 338 0 12 chr1 32295343 32295423 -249898241 + MIR SINE MIR 37 115 -147 304 203 0 17 chr1 32295988 32296047 -249897617 - L2 LINE L2 -63 3250 3193 331 267 190 17 chr1 32296050 32296166 -249897498 + L2 LINE L2 3177 3312 -1 198 217 0 83 chr1 32296910 32296970 -249896694 - MIR SINE MIR -63 199 145 727 282 75 18 chr1 32297315 32297542 -249896122 + MIR SINE MIR 20 259 -3 370 224 13 0 chr1 32297551 32297619 -249896045 + MLT1E2 LTR MaLR 3 71 -434 870 97 0 0 chr1 32297619 32297743 -249895921 + MSTB1 LTR MaLR 1 124 -302 2370 85 3 0 chr1 32297753 32298047 -249895617 + AluSg SINE Alu 1 295 -15 1150 131 113 9 chr1 32298050 32298272 -249895392 + MSTB1 LTR MaLR 188 432 0 1512 251 91 43 chr1 32298272 32298810 -249894854 + MLT1E2 LTR MaLR 63 626 0 227 260 14 0 chr1 32300041 32300114 -249893550 + L2 LINE L2 2313 2386 -928 396 250 37 9 chr1 32300727 32300835 -249892829 + MIR SINE MIR 25 136 -72 296 292 62 0 chr1 32301171 32301267 -249892397 - MIR SINE MIR -47 215 114 327 209 0 55 chr1 32301276 32301367 -249892297 - MIR3 SINE MIR -28 180 95 435 331 21 0 chr1 32301717 32301859 -249891805 - L2 LINE L2 -480 2834 2690 317 198 93 23 chr1 32302078 32302164 -249891500 - L2 LINE L2 -21 3292 3201 400 307 53 26 chr1 32302220 32302409 -249891255 + MIR SINE MIR 23 216 -46 587 236 70 20 chr1 32303666 32303865 -249889799 - Charlie8 DNA MER1_type -2202 215 7 399 177 0 0 chr1 32303956 32304052 -249889612 + CT-rich Low_complexity Low_complexity 1 96 0 399 313 122 17 chr1 32304328 32304558 -249889106 - MIR SINE MIR -6 256 3 356 254 97 22 chr1 32304586 32304720 -249888944 - L2 LINE L2 -262 3010 2867 355 252 19 9 chr1 32304776 32304883 -249888781 - MLT1K LTR MaLR 0 588 481 422 148 0 23 chr1 32304922 32305010 -249888654 + (GGA)n Simple_repeat Simple_repeat 3 88 0 787 281 108 0 chr1 32305031 32305262 -249888402 - MIR SINE MIR -3 259 4 186 381 48 0 chr1 32305322 32305406 -249888258 - L2 LINE L2 -536 2778 2691 487 218 165 38 chr1 32306409 32306542 -249887122 - L2 LINE L2 -1 3271 3122 211 324 181 30 chr1 32306698 32307324 -249886340 + L2 LINE L2 2371 3107 -165 624 235 102 45 chr1 32307389 32307653 -249886011 - MLT1J2 LTR MaLR -118 332 54 1629 203 79 40 chr1 32307723 32308070 -249885594 - MLT1C LTR MaLR -4 463 94 2352 99 0 3 chr1 32308070 32308372 -249885292 - AluSc SINE Alu -7 302 2 1629 203 79 40 chr1 32308372 32308468 -249885196 - MLT1C LTR MaLR -373 94 3 250 222 133 0 chr1 32309143 32309233 -249884431 + MIR SINE MIR 30 131 -77 830 270 52 0 chr1 32309540 32309751 -249883913 - MIR SINE MIR -29 233 12 598 292 81 22 chr1 32309785 32310023 -249883641 - MIR SINE MIR 0 262 15 223 147 0 0 chr1 32310069 32310103 -249883561 - MIR SINE MIR -10 252 219 308 335 112 19 chr1 32310120 32310326 -249883338 - MIR SINE MIR -8 254 30 202 337 114 29 chr1 32310612 32310858 -249882806 - L3 LINE CR1 -54 1523 1257 448 310 35 18 chr1 32310891 32311062 -249882602 - MIR SINE MIR -6 256 83 288 314 21 7 chr1 32311183 32311323 -249882341 + MLT1L LTR MaLR 474 615 0 254 340 0 0 chr1 32311534 32311634 -249882030 - MIR SINE MIR -123 139 40 600 226 19 26 chr1 32311675 32311830 -249881834 + LTR41 LTR ERVL 1 154 -619 466 170 85 65 chr1 32312175 32312328 -249881336 + LTR41 LTR ERVL 608 763 -10 578 308 213 6 chr1 32313795 32314142 -249879522 + L2 LINE L2 2837 3255 -17 288 0 0 0 chr1 32314142 32314174 -249879490 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 231 121 0 0 chr1 32315363 32315396 -249878268 + MIR SINE MIR 117 149 -113 683 114 0 0 chr1 32315467 32315572 -249878092 - AluSg/x SINE Alu -4 308 204 2692 48 0 0 chr1 32315637 32315946 -249877718 + AluY SINE Alu 1 309 -2 638 200 88 33 chr1 32315948 32316188 -249877476 + L1ME1 LINE L1 5280 5532 -630 838 170 60 23 chr1 32316325 32316543 -249877121 - L1PA13 LINE L1 -3 6160 5935 * 2134 215 28 48 chr1 32316527 32317130 -249876534 + L1ME1 LINE L1 5517 6130 -54 2579 57 0 0 chr1 32317130 32317427 -249876237 + AluY SINE Alu 1 297 -14 2134 215 28 48 chr1 32317427 32317452 -249876212 + L1ME1 LINE L1 6130 6154 -30 1727 129 7 7 chr1 32317452 32317747 -249875917 - L1MA4 LINE L1 -8 6292 5998 2134 215 28 48 chr1 32317747 32317818 -249875846 + L1ME1 LINE L1 6154 6184 0 618 308 26 79 chr1 32318137 32318442 -249875222 + L2 LINE L2 2978 3266 -6 6518 204 63 27 chr1 32318650 32321287 -249872377 + L1MC3 LINE L1 3247 5401 -745 1043 335 53 26 chr1 32321290 32321872 -249871792 + L2 LINE L2 2298 2895 -419 2301 94 13 10 chr1 32322544 32322852 -249870812 - AluSq SINE Alu -4 309 1 2117 173 46 35 chr1 32322999 32323152 -249870512 - MER65C LTR ERV1 0 461 311 1863 135 43 0 chr1 32323152 32323433 -249870231 + AluJb SINE Alu 2 294 -18 2277 102 7 3 chr1 32323435 32323738 -249869926 + AluSq SINE Alu 1 304 -9 2117 173 46 35 chr1 32323738 32324037 -249869627 - MER65C LTR ERV1 -150 311 1 1601 272 15 30 chr1 32324678 32324730 -249868934 - MER4-int LTR ERV1 -816 4055 4004 2265 108 3 0 chr1 32324730 32325018 -249868646 + AluSg SINE Alu 1 289 -21 1601 272 15 30 chr1 32325018 32325208 -249868456 - MER4-int LTR ERV1 -867 4004 3813 2248 106 0 16 chr1 32325208 32325511 -249868153 + AluSx SINE Alu 1 298 -14 1601 272 15 30 chr1 32325511 32325726 -249867938 - MER4-int LTR ERV1 -1058 3813 3604 259 146 0 73 chr1 32325813 32325868 -249867796 - MER4-int LTR ERV1 -1069 5262 5212 2780 183 90 74 chr1 32325898 32327213 -249866451 - MER4-int LTR ERV1 -1228 5103 2469 956 151 13 128 chr1 32327292 32327597 -249866067 - MER4-int LTR ERV1 -2868 3730 3461 844 188 55 105 chr1 32327688 32327740 -249865924 - MER4-int LTR ERV1 -4310 2448 2395 2229 120 13 0 chr1 32327740 32328040 -249865624 + AluSq SINE Alu 1 304 -9 844 188 55 105 chr1 32328040 32328556 -249865108 - MER4-int LTR ERV1 -4363 2395 1909 670 226 84 42 chr1 32328592 32328647 -249865017 - MER4-int LTR ERV1 -5835 1981 1636 1216 184 40 25 chr1 32328647 32328924 -249864740 - LTR57-int LTR ERVL -3757 1586 1306 282 265 29 0 chr1 32328924 32328992 -249864672 + L1M1 LINE L1 14 83 -7482 1369 159 54 46 chr1 32328992 32329343 -249864321 - MER4-int LTR ERV1 -2942 1929 1576 938 248 124 10 chr1 32329348 32329655 -249864009 - MER34 LTR ERV1 -162 380 39 2331 174 15 34 chr1 32330397 32330447 -249863217 - MER65C LTR ERV1 0 461 412 1977 145 6 25 chr1 32330447 32330765 -249862899 - AluSx SINE Alu 0 312 1 2331 174 15 34 chr1 32330765 32331184 -249862480 - MER65C LTR ERV1 -49 412 1 198 0 0 0 chr1 32331341 32331363 -249862301 + (TG)n Simple_repeat Simple_repeat 2 23 0 225 213 28 19 chr1 32331406 32331514 -249862150 + GA-rich Low_complexity Low_complexity 2 110 0 1826 283 81 9 chr1 32331514 32332196 -249861468 - L2 LINE L2 -1014 2300 1570 631 333 45 16 chr1 32332310 32332692 -249860972 - L1MC4a LINE L1 -1894 5914 5522 228 294 111 33 chr1 32333096 32333249 -249860415 + MLT1J LTR MaLR 5 169 -342 248 159 32 16 chr1 32333286 32333349 -249860315 + MLT1L LTR MaLR 205 268 -347 257 267 42 42 chr1 32333469 32333589 -249860075 + MLT1J LTR MaLR 343 462 -49 252 300 58 33 chr1 32333665 32333785 -249859879 + MIR SINE MIR 17 139 -69 311 315 133 6 chr1 32334072 32334237 -249859427 + MIR3 SINE MIR 8 193 -15 363 306 24 8 chr1 32334624 32334748 -249858916 + MIR3 SINE MIR 82 207 -1 610 300 136 29 chr1 32334962 32335418 -249858246 + MLT1K LTR MaLR 78 582 -6 487 277 90 32 chr1 32335829 32335984 -249857680 - MIR3 SINE MIR -29 179 16 354 316 58 7 chr1 32336722 32336877 -249856787 - MIR SINE MIR -18 244 82 198 359 92 23 chr1 32337652 32337783 -249855881 + MIR3 SINE MIR 3 142 -66 393 303 76 20 chr1 32338323 32338521 -249855143 - MLT1K LTR MaLR -6 582 374 1304 204 52 31 chr1 32339084 32339452 -249854212 + L1MD2 LINE L1 5953 7967 -28 965 235 73 8 chr1 32339504 32339764 -249853900 - L1MDb LINE L1 -6088 321 45 271 197 15 0 chr1 32339769 32339835 -249853829 + L1MD1 LINE L1 6174 6240 -2 378 107 0 0 chr1 32340364 32340420 -249853244 + (TG)n Simple_repeat Simple_repeat 2 57 0 336 277 133 18 chr1 32340444 32340610 -249853054 - MIR SINE MIR -76 186 2 460 237 29 40 chr1 32340651 32340835 -249852829 - MIR SINE MIR -70 138 8 429 213 64 0 chr1 32341931 32342025 -249851639 + MIR SINE MIR 65 164 -98 183 139 0 0 chr1 32342073 32342109 -249851555 + (TA)n Simple_repeat Simple_repeat 1 36 0 387 287 118 0 chr1 32342157 32342293 -249851371 + L2 LINE L2 3118 3269 -3 181 263 35 0 chr1 32343583 32343640 -249850024 + L2 LINE L2 3200 3258 -14 533 282 92 11 chr1 32344765 32344939 -249848725 - MIR SINE MIR -66 196 9 394 211 154 49 chr1 32344945 32345068 -249848596 - L3 LINE CR1 -108 1469 1334 190 277 113 50 chr1 32345077 32345218 -249848446 - L3b LINE CR1 -321 1262 1113 301 184 66 13 chr1 32345286 32345362 -249848302 - L1MDa LINE L1 -4021 2519 2440 394 250 9 0 chr1 32345496 32345608 -249848056 - L1MA10 LINE L1 -1 6333 6221 3653 72 4 0 chr1 32345613 32346088 -249847576 + L1PA7 LINE L1 5675 6151 -3 2202 207 107 28 chr1 32346089 32347101 -249846563 - L1ME LINE L1 -584 5582 4497 537 265 49 100 chr1 32347272 32347743 -249845921 + L2 LINE L2 2826 3272 0 194 235 12 129 chr1 32347905 32347990 -249845674 - L3 LINE CR1 -135 1442 1368 330 245 11 32 chr1 32348149 32348243 -249845421 + MIR SINE MIR 60 151 -57 195 195 24 0 chr1 32348819 32348860 -249844804 - MIR SINE MIR -110 152 111 241 336 104 15 chr1 32349746 32349880 -249843784 - MIR SINE MIR -62 146 1 367 324 115 17 chr1 32350176 32350463 -249843201 + L2 LINE L2 1749 2063 -1251 208 276 0 17 chr1 32350487 32350545 -249843119 + L3 LINE CR1 1375 1431 -146 307 301 124 47 chr1 32350573 32350657 -249843007 - MIR SINE MIR -12 250 174 2735 33 0 0 chr1 32350657 32350962 -249842702 - AluY SINE Alu -6 305 1 307 301 124 47 chr1 32350962 32351070 -249842594 - MIR SINE MIR -88 174 43 * 363 338 77 21 chr1 32351067 32351301 -249842363 - MIR SINE MIR 0 262 16 647 288 21 58 chr1 32351695 32351935 -249841729 - MIR SINE MIR -12 250 20 425 286 119 16 chr1 32351981 32352166 -249841498 - MIR SINE MIR -10 252 49 295 329 68 48 chr1 32352774 32352920 -249840744 + MIR3 SINE MIR 17 165 -43 2991 127 14 10 chr1 32353025 32353515 -249840149 - L1MB3 LINE L1 -2 6181 5690 304 128 0 0 chr1 32353515 32353562 -249840102 + MLT2B3 LTR ERVL 5 51 -503 1985 169 101 42 chr1 32353747 32354203 -249839461 + MLT2B3 LTR ERVL 71 553 -1 2143 169 14 33 chr1 32354204 32354598 -249839066 - L1MB3 LINE L1 -485 5698 5313 2514 71 0 0 chr1 32354598 32354895 -249838769 + AluY SINE Alu 1 297 -14 2143 169 14 33 chr1 32354895 32355060 -249838604 - L1MB3 LINE L1 -870 5313 5146 3487 106 16 12 chr1 32355096 32355605 -249838059 + MER9 LTR ERVK 1 511 0 583 153 34 25 chr1 32355605 32355723 -249837941 + HERVK9 LTR ERVK 1 119 -5797 * 4767 125 61 53 chr1 32355718 32355958 -249837706 - HERVK9 LTR ERVK -4856 1060 823 214 196 0 71 chr1 32355958 32356014 -249837650 - MER5B DNA MER1_type -72 106 55 4767 125 61 53 chr1 32356014 32356673 -249836991 - HERVK9 LTR ERVK -5093 823 99 3427 123 8 6 chr1 32356690 32357200 -249836464 - MER9 LTR ERVK 0 511 1 2797 87 0 3 chr1 32357325 32357681 -249835983 - THE1A LTR MaLR 0 355 1 788 179 17 0 chr1 32358332 32358505 -249835159 + (CACCAT)n Simple_repeat Simple_repeat 4 179 0 227 238 0 0 chr1 32358505 32358547 -249835117 + (CCA)n Simple_repeat Simple_repeat 1 42 0 1253 223 59 30 chr1 32358548 32358952 -249834712 + LTR52 LTR ERVL 1 416 -5 731 246 78 1 chr1 32359026 32359223 -249834441 - MIR SINE MIR -32 230 20 241 344 22 0 chr1 32359218 32359308 -249834356 - L3b LINE CR1 -188 1395 1304 * 210 307 34 0 chr1 32359371 32359459 -249834205 + L2 LINE L2 2148 2238 -1076 271 256 228 39 chr1 32359506 32359686 -249833978 - MIR SINE MIR -28 234 21 1518 194 8 88 chr1 32360077 32360474 -249833190 - MLT1A1 LTR MaLR 0 365 1 314 227 182 0 chr1 32360665 32360753 -249832911 - L2 LINE L2 -13 3300 3197 386 313 0 0 chr1 32360869 32360968 -249832696 + MIR SINE MIR 49 147 -61 309 294 45 75 chr1 32361882 32361931 -249831733 - L2 LINE L2 -6 3266 3217 2790 184 24 0 chr1 32361931 32362392 -249831272 - MER70A LTR ERVL 0 472 1 309 294 45 75 chr1 32362392 32362543 -249831121 - L2 LINE L2 -55 3217 3072 315 130 0 0 chr1 32362629 32362683 -249830981 + (CCA)n Simple_repeat Simple_repeat 1 54 0 5642 137 7 44 chr1 32362956 32363960 -249829704 - MSTA-int LTR MaLR -611 969 3 324 175 16 0 chr1 32363962 32364025 -249829639 - MSTA LTR MaLR 0 428 365 244 327 110 37 chr1 32364126 32364648 -249829016 + L2 LINE L2 2681 3245 -27 630 315 81 48 chr1 32364813 32365293 -249828371 + MLT1L LTR MaLR 120 615 0 305 269 82 30 chr1 32365503 32365637 -249828027 + MIR3 SINE MIR 16 156 -52 902 254 46 17 chr1 32365674 32365914 -249827750 - MIR SINE MIR -3 259 13 187 229 0 0 chr1 32365930 32365965 -249827699 - MIR SINE MIR -227 35 1 283 191 0 0 chr1 32365965 32366012 -249827652 + L2 LINE L2 3226 3272 0 260 267 85 57 chr1 32367012 32367188 -249826476 + MIR SINE MIR 46 226 -36 277 237 0 0 chr1 32367226 32367285 -249826379 + (ATG)n Simple_repeat Simple_repeat 1 59 0 906 162 0 0 chr1 32367289 32367468 -249826196 + (TGG)n Simple_repeat Simple_repeat 1 179 0 276 200 0 0 chr1 32367484 32367549 -249826115 + (TGG)n Simple_repeat Simple_repeat 1 65 0 2250 194 127 46 chr1 32367562 32368372 -249825292 + MER31-int LTR ERV1 4228 5103 -1228 320 268 0 37 chr1 32368376 32368458 -249825206 + MER31-int LTR ERV1 3881 3959 -977 1601 272 15 30 chr1 32368544 32368759 -249824905 + MER31-int LTR ERV1 3604 3821 -1050 2252 103 0 17 chr1 32368759 32369061 -249824603 - AluSx SINE Alu -15 297 1 1601 272 15 30 chr1 32369061 32369251 -249824413 + MER31-int LTR ERV1 3821 4004 -867 2265 108 3 0 chr1 32369251 32369539 -249824125 - AluSg SINE Alu -21 289 1 1601 272 15 30 chr1 32369539 32369591 -249824073 + MER31-int LTR ERV1 4004 4055 -816 2072 173 36 49 chr1 32370228 32370527 -249823137 + MER65C LTR ERV1 1 302 -159 2212 105 7 7 chr1 32370527 32370831 -249822833 - AluSq SINE Alu -9 304 1 1801 145 43 0 chr1 32370833 32371115 -249822549 - AluJb SINE Alu -17 295 2 2072 173 36 49 chr1 32371115 32371279 -249822385 + MER65C LTR ERV1 303 461 0 457 109 31 0 chr1 32371427 32371491 -249822173 + Alu SINE Alu 2 67 -243 314 222 56 44 chr1 32371778 32371868 -249821796 + L1MC4 LINE L1 6612 6702 -1340 * 334 264 33 11 chr1 32371850 32371941 -249821723 - L1MC4 LINE L1 -1337 6705 6613 1798 267 72 4 chr1 32371941 32372623 -249821041 + L1MEc LINE L1 1587 2314 -4082 366 238 0 0 chr1 32372590 32372674 -249820990 + L1ME1 LINE L1 5996 6079 -156 * 350 243 54 0 chr1 32372677 32372788 -249820876 + L1MA10 LINE L1 6217 6333 -1 318 333 89 6 chr1 32372916 32373096 -249820568 + L3 LINE CR1 643 837 -740 560 232 219 22 chr1 32373331 32373534 -249820130 - MIR SINE MIR -2 260 17 301 339 119 0 chr1 32373547 32373724 -249819940 + L3 LINE CR1 982 1179 -398 282 235 71 35 chr1 32373759 32373844 -249819820 - L2 LINE L2 -50 3263 3176 201 147 0 0 chr1 32373849 32373883 -249819781 + (CA)n Simple_repeat Simple_repeat 1 34 0 1095 192 113 0 chr1 32373895 32374154 -249819510 - L1ME LINE L1 -508 5656 5360 250 225 14 14 chr1 32374178 32374249 -249819415 + (TA)n Simple_repeat Simple_repeat 1 71 0 386 293 9 35 chr1 32374250 32374366 -249819298 + L1MC4 LINE L1 6593 6705 -1337 309 322 17 26 chr1 32374305 32374420 -249819244 - L1MC4 LINE L1 -1339 6703 6590 * 234 240 10 39 chr1 32374455 32374559 -249819105 + (CATATA)n Simple_repeat Simple_repeat 1 101 0 1907 77 11 4 chr1 32374672 32374945 -249818719 - HERVL-A2 LTR ERVL -115 5539 5265 * 34526 67 3 3 chr1 32374938 32379412 -249814252 - HERVL-A2 LTR ERVL -1180 4474 1 385 38 38 0 chr1 32379412 32379465 -249814199 - MLT2A2 LTR ERVL 0 453 399 323 222 111 0 chr1 32379466 32379547 -249814117 - L1MC4 LINE L1 -1339 6703 6614 2738 62 49 10 chr1 32379547 32379936 -249813728 - MLT2A1 LTR ERVL -40 404 1 204 158 0 0 chr1 32379992 32380030 -249813634 + GA-rich Low_complexity Low_complexity 1 38 0 269 312 37 24 chr1 32380132 32380324 -249813340 - MIR SINE MIR -18 244 50 377 272 165 27 chr1 32380396 32380620 -249813044 - LTR41 LTR ERVL -13 760 506 619 186 78 12 chr1 32380876 32381043 -249812621 - LTR41 LTR ERVL -579 194 17 646 254 42 11 chr1 32381048 32381237 -249812427 + MER58 DNA MER1_type 1 195 -146 264 214 29 0 chr1 32381210 32381279 -249812385 + MER58 DNA MER1_type 2259 2329 -91 1672 148 122 10 chr1 32381279 32381583 -249812081 + MER44D DNA MER2_type 1 608 -1 408 214 20 0 chr1 32381583 32381677 -249811987 + MER58 DNA MER1_type 2321 2416 -4 2312 100 0 0 chr1 32381697 32382007 -249811657 + AluSx SINE Alu 1 310 -2 1760 95 4 4 chr1 32382192 32382435 -249811229 + AluSx SINE Alu 17 259 -53 315 219 37 61 chr1 32382745 32382827 -249810837 - MIR3 SINE MIR -21 187 108 259 293 112 9 chr1 32382850 32382966 -249810698 + MIR SINE MIR 16 143 -65 860 224 83 85 chr1 32383973 32384371 -249809293 - LTR16A1 LTR ERVL -5 452 56 254 238 105 70 chr1 32384474 32384617 -249809047 + MLT1K LTR MaLR 66 213 -375 1076 262 80 18 chr1 32384732 32385121 -249808543 - L1ME LINE L1 -445 5721 5309 418 279 48 34 chr1 32385135 32385282 -249808382 - L1ME LINE L1 -1698 4448 4300 184 196 22 120 chr1 32385400 32385492 -249808172 + MIR SINE MIR 124 206 -56 * 827 228 35 5 chr1 32385491 32385688 -249807976 - MIR SINE MIR -59 203 1 276 149 135 54 chr1 32385714 32385788 -249807876 + MIR SINE MIR 178 257 -5 300 368 34 10 chr1 32385790 32385994 -249807670 - L2 LINE L2 -39 3233 3025 257 268 62 31 chr1 32387595 32387692 -249805972 - MIR3 SINE MIR -51 157 58 210 171 0 0 chr1 32387967 32388002 -249805662 - MIR SINE MIR -6 256 222 387 306 98 21 chr1 32388028 32388221 -249805443 - MIR SINE MIR -9 253 46 559 221 67 20 chr1 32388518 32388695 -249804969 - MIR SINE MIR -61 147 3 339 316 0 0 chr1 32388995 32389090 -249804574 + CT-rich Low_complexity Low_complexity 1 95 0 221 0 35 0 chr1 32390129 32390158 -249803506 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 340 278 120 0 chr1 32391129 32391237 -249802427 + MIR SINE MIR 107 227 -35 1382 282 37 50 chr1 32391573 32392634 -249801030 - L1ME3 LINE L1 -199 5963 4915 1491 277 115 44 chr1 32392755 32393696 -249799968 - L1ME3 LINE L1 -1384 4762 3698 1935 125 3 17 chr1 32393696 32394018 -249799646 - AluSg SINE Alu 0 310 1 1491 277 115 44 chr1 32394018 32394408 -249799256 - L1ME3 LINE L1 -2448 3698 3337 235 316 30 71 chr1 32394416 32394584 -249799080 - MIR SINE MIR -57 205 45 260 350 69 72 chr1 32394817 32395123 -249798541 - L2 LINE L2 -50 3222 2918 3693 218 45 34 chr1 32395235 32395537 -249798127 + MER45B DNA AcHobo 5 302 -1279 4096 136 34 6 chr1 32395537 32396219 -249797445 + L1MB3 LINE L1 5476 6176 -7 3693 218 45 34 chr1 32396219 32396805 -249796859 + MER45B DNA AcHobo 302 903 -137 2860 232 30 39 chr1 32396805 32397041 -249796623 + L1M4 LINE L1 3643 3879 -2267 1538 210 0 10 chr1 32397041 32397351 -249796313 + AluJo SINE Alu 1 307 -5 2860 232 30 39 chr1 32397351 32397834 -249795830 + L1M4 LINE L1 3879 4356 -1790 2080 115 0 7 chr1 32397834 32398130 -249795534 - AluSx SINE Alu -18 294 1 2860 232 30 39 chr1 32398130 32398267 -249795397 + L1M4 LINE L1 4356 4493 -1653 498 252 101 31 chr1 32398275 32398561 -249795103 + L1MEc LINE L1 1325 1584 -4956 548 172 25 49 chr1 32398573 32398695 -249794969 + MLT1E2 LTR MaLR 505 623 -3 489 293 25 10 chr1 32398714 32398912 -249794752 + L1MCc LINE L1 152 352 -6071 1295 258 77 33 chr1 32398914 32399614 -249794050 + L1MCc LINE L1 1096 1868 -5073 438 20 0 0 chr1 32399614 32399665 -249793999 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 1295 258 77 33 chr1 32399665 32399915 -249793749 + L1MCc LINE L1 1868 2106 -4835 405 94 35 0 chr1 32399915 32400000 -249793664 + (TA)n Simple_repeat Simple_repeat 1 88 0 333 204 11 23 chr1 32400673 32400761 -249792903 - LTR16A LTR ERVL -38 412 326 23 78 0 0 chr1 32401422 32401473 -249792191 + AT_rich Low_complexity Low_complexity 1 51 0 677 235 41 6 chr1 32401502 32401672 -249791992 + MIR SINE MIR 1 176 -86 772 248 57 76 chr1 32401813 32402046 -249791618 - L1MD2 LINE L1 -2 6357 6130 215 61 30 0 chr1 32402046 32402079 -249791585 + (TG)n Simple_repeat Simple_repeat 1 34 0 772 248 57 76 chr1 32402079 32402159 -249791505 - L1MD2 LINE L1 -229 6130 6050 551 260 104 6 chr1 32402168 32402341 -249791323 - MIR SINE MIR -40 222 33 2065 132 0 0 chr1 32402459 32402755 -249790909 - AluSx SINE Alu -16 296 1 379 297 44 1 chr1 32402871 32402999 -249790665 - L1M4 LINE L1 -522 5656 5524 805 279 137 37 chr1 32403000 32403973 -249789691 - L1M4 LINE L1 -710 5452 4400 362 313 162 5 chr1 32403977 32404175 -249789489 + MIR SINE MIR 28 256 -6 417 361 82 20 chr1 32404831 32405269 -249788395 - L1MD2 LINE L1 -2004 5804 5340 219 36 0 0 chr1 32405544 32405572 -249788092 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 266 59 0 0 chr1 32405703 32405737 -249787927 - L1P LINE L1 -1988 4158 4125 8440 89 5 0 chr1 32405738 32407675 -249785989 + L1PA7 LINE L1 4196 6149 -5 5236 118 16 9 chr1 32408140 32408914 -249784750 + MER4E LTR ERV1 1 779 0 1634 133 105 0 chr1 32409333 32409618 -249784046 - MSTA LTR MaLR 0 428 114 246 214 0 0 chr1 32409664 32409720 -249783944 - L1ME LINE L1 -684 5437 5382 685 110 31 1 chr1 32409730 32409840 -249783824 - MSTA LTR MaLR -313 113 1 9705 171 19 4 chr1 32409846 32411468 -249782196 - MSTA-int LTR MaLR -6 1645 1 2323 147 65 5 chr1 32411470 32411872 -249781792 - MSTA LTR MaLR -2 426 1 2314 78 0 0 chr1 32412225 32412521 -249781143 - AluY SINE Alu -15 296 1 422 297 66 19 chr1 32412758 32412970 -249780694 - HAL1b LINE L1 -561 787 566 476 245 134 53 chr1 32413191 32413551 -249780113 + MLT1H LTR MaLR 42 533 -16 468 268 9 18 chr1 32413606 32413718 -249779946 + MIR3 SINE MIR 92 202 -6 181 316 95 11 chr1 32413924 32414019 -249779645 + L2 LINE L2 1820 1922 -1392 1994 112 11 3 chr1 32414571 32414857 -249778807 - AluSx SINE Alu -24 288 1 187 256 0 0 chr1 32415604 32415643 -249778021 + L2 LINE L2 3214 3252 -20 234 191 16 48 chr1 32416536 32416599 -249777065 + LTR15 LTR ERV1 334 394 -99 777 287 37 19 chr1 32416614 32416935 -249776729 + L2 LINE L2 2405 2731 -583 1400 165 23 3 chr1 32417087 32417354 -249776310 + MLT1A1 LTR MaLR 1 361 -4 1409 214 54 0 chr1 32417363 32417658 -249776006 - MLT1C LTR MaLR 0 467 157 2408 137 70 10 chr1 32417658 32418060 -249775604 + MSTB LTR MaLR 1 426 0 2493 122 3 0 chr1 32418067 32418421 -249775243 + THE1A LTR MaLR 1 355 0 11960 95 1 0 chr1 32418426 32419984 -249773680 + THE1A-int LTR MaLR 21 1580 0 2626 92 0 40 chr1 32419984 32420354 -249773310 + THE1A LTR MaLR 1 355 0 771 165 0 79 chr1 32420364 32420528 -249773136 - MLT1C LTR MaLR -239 151 1 394 184 35 0 chr1 32420563 32420650 -249773014 + L1M4 LINE L1 4673 4762 -1384 731 171 0 0 chr1 32420650 32420761 -249772903 + FLAM_C SINE Alu 3 113 -30 3390 164 46 0 chr1 32421105 32421689 -249771975 - LTR31 LTR ERV1 0 619 9 367 272 26 0 chr1 32422500 32422614 -249771050 + MER69 DNA AcHobo 1 117 -1109 * 1754 223 25 69 chr1 32422596 32423130 -249770534 + MER69 DNA AcHobo 1938 2443 -83 2416 66 0 0 chr1 32423130 32423432 -249770232 - AluY SINE Alu -9 302 1 1754 223 25 69 chr1 32423432 32423508 -249770156 + MER69 DNA AcHobo 2443 2521 -5 371 324 125 26 chr1 32423520 32424001 -249769663 + L2 LINE L2 2751 3286 -27 414 305 64 0 chr1 32424013 32424154 -249769510 + L1MC4a LINE L1 5531 5680 -441 575 289 46 29 chr1 32424155 32424394 -249769270 + MIR SINE MIR 3 245 -17 348 342 72 45 chr1 32424421 32424643 -249769021 + L1MC4a LINE L1 5697 5924 -1884 458 282 111 54 chr1 32424906 32425088 -249768576 + MLT1H LTR MaLR 23 193 -216 2222 81 0 26 chr1 32425088 32425397 -249768267 + AluY SINE Alu 6 306 -5 458 282 111 54 chr1 32425397 32425599 -249768065 + MLT1H LTR MaLR 193 409 0 400 271 116 15 chr1 32425896 32426095 -249767569 - L1ME LINE L1 -307 5814 5596 239 342 26 0 chr1 32426655 32426731 -249766933 + MIR SINE MIR 41 118 -90 699 237 0 68 chr1 32426737 32426927 -249766737 + MLT1J1 LTR MaLR 8 184 -262 258 313 176 11 chr1 32427502 32427678 -249765986 + MIR SINE MIR 8 212 -50 180 367 0 0 chr1 32428567 32428616 -249765048 - MIR3 SINE MIR -18 190 142 206 280 16 80 chr1 32428833 32428958 -249764706 + L2 LINE L2 2979 3095 -177 335 278 123 74 chr1 32428970 32429337 -249764327 + L2 LINE L2 2928 3312 -1 462 230 46 82 chr1 32430330 32430525 -249763139 - MIR SINE MIR -35 227 34 293 305 105 15 chr1 32430983 32431183 -249762481 + L2 LINE L2 2562 2779 -535 777 209 88 38 chr1 32431226 32431489 -249762175 - LTR33 LTR ERVL -236 285 10 193 423 11 23 chr1 32431468 32431643 -249762021 - MIR3 SINE MIR -27 181 9 * 2333 129 117 8 chr1 32431859 32432245 -249761419 + MSTA LTR MaLR 1 428 0 414 284 97 45 chr1 32432901 32433211 -249760453 - MER115 DNA AcHobo -367 326 1 2286 139 34 0 chr1 32434071 32434423 -249759241 - THE1B LTR MaLR 0 364 1 526 332 126 0 chr1 32434577 32434767 -249758897 + MIR SINE MIR 48 261 -1 217 347 88 48 chr1 32435207 32435354 -249758310 - MIR3 SINE MIR -52 156 4 310 304 176 7 chr1 32435937 32436085 -249757579 + MIR SINE MIR 23 195 -67 1689 247 78 19 chr1 32436085 32436570 -249757094 - MLT1E LTR MaLR 0 593 80 253 297 198 0 chr1 32436727 32436838 -249756826 - L2 LINE L2 -2 3270 3138 489 257 123 48 chr1 32437355 32437738 -249755926 + MLT1J2 LTR MaLR 75 449 -1 384 295 168 38 chr1 32437756 32438095 -249755569 - L2 LINE L2 0 3313 2931 435 289 37 15 chr1 32438116 32438251 -249755413 - MIR SINE MIR -54 208 71 218 182 182 0 chr1 32438483 32438538 -249755126 - MER5A DNA MER1_type -95 94 30 182 286 143 0 chr1 32438768 32438845 -249754819 - MIR SINE MIR -155 107 20 229 182 0 36 chr1 32439157 32439212 -249754452 + CT-rich Low_complexity Low_complexity 1 53 0 200 366 37 30 chr1 32439214 32439348 -249754316 - L2 LINE L2 -1 3271 3137 291 198 110 33 chr1 32439502 32439593 -249754071 - L2 LINE L2 -189 3083 2986 228 163 0 0 chr1 32439650 32439693 -249753971 + (TGAA)n Simple_repeat Simple_repeat 1 43 0 417 280 23 30 chr1 32439953 32440085 -249753579 + MIR SINE MIR 36 166 -96 389 298 144 0 chr1 32440091 32440306 -249753358 + MLT1H LTR MaLR 49 294 -255 265 313 8 61 chr1 32440502 32440633 -249753031 + MIR SINE MIR 139 262 0 209 247 104 13 chr1 32440752 32440829 -249752835 + MIR SINE MIR 63 146 -116 285 323 46 15 chr1 32441203 32441333 -249752331 + L2 LINE L2 3180 3313 0 581 341 106 17 chr1 32441343 32442050 -249751614 + L2 LINE L2 2540 3313 0 323 169 0 0 chr1 32442107 32442166 -249751498 + MER96 DNA MER1_type? 4 62 -113 189 368 7 21 chr1 32442960 32443104 -249750560 + L2 LINE L2 2965 3106 -166 336 282 60 27 chr1 32443106 32443255 -249750409 + MIR SINE MIR 3 156 -52 409 291 140 1 chr1 32443707 32443854 -249749810 - MIR SINE MIR -26 236 62 360 119 0 0 chr1 32443854 32443913 -249749751 + L1MA4A LINE L1 6240 6298 -5 409 291 140 1 chr1 32443913 32443937 -249749727 - MIR SINE MIR -200 62 43 217 346 0 12 chr1 32444325 32444406 -249749258 - L2 LINE L2 -1 3271 3192 492 273 0 8 chr1 32444414 32444546 -249749118 - MLT1K LTR MaLR -13 575 445 223 282 77 13 chr1 32444549 32444627 -249749037 - L2 LINE L2 -38 3275 3193 819 298 42 14 chr1 32444651 32444940 -249748724 - MLT1K LTR MaLR -158 430 134 556 274 56 28 chr1 32445341 32445520 -249748144 + MIR SINE MIR 58 241 -21 623 309 21 0 chr1 32446034 32446228 -249747436 - MIR3 SINE MIR 0 208 11 1257 175 0 21 chr1 32446318 32446552 -249747112 - MLT1A1 LTR MaLR 0 365 137 2145 126 7 0 chr1 32446562 32446871 -249746793 + AluSx SINE Alu 1 311 -1 742 140 22 7 chr1 32446965 32447101 -249746563 - MLT1A1 LTR MaLR -227 138 1 1835 173 3 3 chr1 32447279 32447591 -249746073 + AluJo SINE Alu 1 312 0 2258 101 0 0 chr1 32447778 32448074 -249745590 - AluSg1 SINE Alu -13 296 1 705 330 66 30 chr1 32448846 32449273 -249744391 + L2 LINE L2 2826 3267 -5 2073 71 0 4 chr1 32449632 32449901 -249743763 + AluY SINE Alu 44 311 0 502 296 19 0 chr1 32449982 32450141 -249743523 - MIR SINE MIR -7 255 94 230 56 28 0 chr1 32451319 32451355 -249742309 + (TTA)n Simple_repeat Simple_repeat 2 38 0 2316 240 62 40 chr1 32451469 32452423 -249741241 + L1ME1 LINE L1 5199 6331 -3 488 265 171 34 chr1 32452612 32452963 -249740701 + MLT1H LTR MaLR 133 531 -18 181 200 0 25 chr1 32453009 32453049 -249740615 - L2 LINE L2 -207 3065 3027 185 0 40 0 chr1 32453055 32453080 -249740584 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1603 99 9 9 chr1 32453112 32453345 -249740319 - L1PB1 LINE L1 0 6151 5919 359 293 23 38 chr1 32454213 32454346 -249739318 + MIR SINE MIR 24 154 -108 192 298 18 0 chr1 32454986 32455043 -249738621 - L3 LINE CR1 -3 1574 1517 462 231 0 0 chr1 32455053 32455157 -249738507 - L2 LINE L2 -319 2994 2891 186 279 140 37 chr1 32455297 32455433 -249738231 + L3 LINE CR1 1076 1225 -352 340 369 37 28 chr1 32456007 32456221 -249737443 - L2 LINE L2 0 3313 3098 476 262 21 14 chr1 32456231 32456372 -249737292 - MIR SINE MIR -70 192 51 597 301 27 16 chr1 32456508 32456691 -249736973 + MIR SINE MIR 28 212 -50 353 315 22 12 chr1 32456878 32457044 -249736620 + MIR SINE MIR 76 244 -18 302 333 14 42 chr1 32457137 32457281 -249736383 + MIR3 SINE MIR 17 156 -52 544 303 76 10 chr1 32457827 32458025 -249735639 + L2 LINE L2 3078 3288 -25 414 0 0 0 chr1 32458029 32458075 -249735589 + (TGAA)n Simple_repeat Simple_repeat 3 48 0 197 385 8 46 chr1 32458081 32458211 -249735453 + L3 LINE CR1 1354 1478 -99 569 250 97 59 chr1 32459716 32459961 -249733703 + MIR SINE MIR 1 261 -1 288 77 0 0 chr1 32459962 32460001 -249733663 + (CAT)n Simple_repeat Simple_repeat 2 40 0 479 342 75 0 chr1 32460027 32460308 -249733356 - L1ME4a LINE L1 -191 5930 5629 245 280 112 0 chr1 32461848 32461955 -249731709 + MIR SINE MIR 35 153 -55 301 250 19 74 chr1 32461962 32462070 -249731594 - MER5B DNA MER1_type 0 178 77 491 268 70 6 chr1 32462093 32462250 -249731414 + MIR SINE MIR 17 183 -79 335 200 18 73 chr1 32463000 32463110 -249730554 + L3 LINE CR1 1397 1500 -77 757 275 24 14 chr1 32463115 32463326 -249730338 + MIR SINE MIR 7 219 -43 1387 206 40 20 chr1 32464138 32464487 -249729177 + MLT1A2 LTR MaLR 3 358 -16 2452 90 27 33 chr1 32464487 32464853 -249728811 + THE1B LTR MaLR 1 364 0 616 350 50 14 chr1 32465545 32465902 -249727762 + MER115 DNA AcHobo 319 688 -5 275 284 27 0 chr1 32465908 32465982 -249727682 + L2 LINE L2 2680 2755 -559 195 188 0 0 chr1 32466254 32466302 -249727362 + C-rich Low_complexity Low_complexity 3 50 0 510 17 0 0 chr1 32466402 32466461 -249727203 + (TG)n Simple_repeat Simple_repeat 2 60 0 301 277 188 27 chr1 32466527 32466783 -249726881 - MLT1K LTR MaLR -253 335 39 301 360 98 6 chr1 32467321 32467485 -249726179 + MIR SINE MIR 21 199 -63 223 247 214 0 chr1 32467566 32467655 -249726009 + MIR SINE MIR 38 145 -63 187 295 106 20 chr1 32468132 32468239 -249725425 - MIR SINE MIR -69 139 42 1721 160 11 55 chr1 32469360 32469741 -249723923 + LTR10A LTR ERV1 1 364 -245 282 309 34 4 chr1 32469771 32469979 -249723685 - L2 LINE L2 -654 2660 2370 1111 95 23 19 chr1 32469998 32470205 -249723459 + LTR10A LTR ERV1 362 612 -21 190 340 201 0 chr1 32470223 32470382 -249723282 + L2 LINE L2 2620 2810 -504 * 988 249 126 28 chr1 32470380 32470770 -249722894 - L2 LINE L2 0 3313 2886 209 323 59 59 chr1 32470802 32471056 -249722608 + L2 LINE L2 2831 3084 -188 805 327 77 18 chr1 32471081 32471482 -249722182 + L2 LINE L2 2889 3313 0 255 241 24 24 chr1 32472491 32472574 -249721090 + L2 LINE L2 2379 2461 -853 442 313 188 19 chr1 32472597 32473231 -249720433 + L2 LINE L2 2562 3311 -2 2231 97 0 10 chr1 32473987 32474287 -249719377 + AluSx SINE Alu 1 297 -15 276 253 73 27 chr1 32474362 32474512 -249719152 - L2 LINE L2 -280 2992 2836 657 259 129 0 chr1 32475493 32475663 -249718001 + MIR SINE MIR 64 255 -7 180 77 0 0 chr1 32475667 32475693 -249717971 + (TAA)n Simple_repeat Simple_repeat 3 28 0 353 302 60 0 chr1 32475808 32475990 -249717674 + L2 LINE L2 2853 3045 -227 246 56 0 0 chr1 32476198 32476234 -249717430 + MADE1 DNA Mariner 1 36 -44 198 191 0 0 chr1 32476715 32476757 -249716907 + GA-rich Low_complexity Low_complexity 3 44 0 264 314 0 35 chr1 32476761 32476847 -249716817 + G-rich Low_complexity Low_complexity 1 83 0 189 0 0 0 chr1 32476895 32476916 -249716748 + (GA)n Simple_repeat Simple_repeat 1 21 0 509 313 46 70 chr1 32477079 32477533 -249716131 + L2 LINE L2 2830 3272 0 220 254 186 8 chr1 32478411 32478529 -249715135 + MIR3 SINE MIR 54 192 -16 198 321 66 0 chr1 32479022 32479128 -249714536 + L2 LINE L2 3137 3249 -23 250 343 20 10 chr1 32480406 32480508 -249713156 - MIR3 SINE MIR -28 180 78 251 315 22 22 chr1 32480604 32480696 -249712968 - L2 LINE L2 -40 3232 3141 348 325 86 43 chr1 32481108 32481355 -249712309 - MIR SINE MIR -6 256 1 342 278 37 25 chr1 32481506 32481691 -249711973 - MIR SINE MIR 0 262 9 210 162 0 0 chr1 32481736 32481773 -249711891 + MIR SINE MIR 112 148 -114 2757 236 116 27 chr1 32482595 32482839 -249710825 - L1M4 LINE L1 -2154 3992 3771 2424 97 3 3 chr1 32482839 32483149 -249710515 + AluY SINE Alu 1 310 -1 2757 236 116 27 chr1 32483149 32483926 -249709738 - L1M4 LINE L1 -2375 3771 2881 419 325 91 22 chr1 32484235 32484466 -249709198 - MIR SINE MIR -15 247 1 251 361 82 0 chr1 32485151 32485273 -249708391 + MIR SINE MIR 76 207 -55 183 250 171 0 chr1 32485289 32485365 -249708299 - L2 LINE L2 -1 3312 3224 1850 168 134 11 chr1 32485385 32485766 -249707898 - MSTA LTR MaLR 0 428 1 4875 143 18 9 chr1 32485766 32486531 -249707133 - MSTA-int LTR MaLR 0 1580 809 3144 161 16 0 chr1 32486528 32487076 -249706588 - MSTA-int LTR MaLR -1094 557 1 * 1851 129 137 51 chr1 32487076 32487320 -249706344 - MSTA LTR MaLR 0 428 136 3286 159 14 77 chr1 32487320 32488051 -249705613 - LTR8 LTR ERV1 -2 689 5 1851 129 137 51 chr1 32488051 32488200 -249705464 - MSTA LTR MaLR -292 136 1 229 261 22 87 chr1 32488312 32488404 -249705260 + MIR SINE MIR 61 146 -62 345 294 39 0 chr1 32488706 32488808 -249704856 + MIR SINE MIR 80 185 -77 270 332 77 41 chr1 32489064 32489260 -249704404 - MIR SINE MIR -38 224 22 460 286 64 0 chr1 32489301 32489441 -249704223 - MIR SINE MIR -7 255 107 246 287 0 70 chr1 32489524 32489653 -249704011 + L2 LINE L2 2940 3059 -213 457 313 55 10 chr1 32490048 32490249 -249703415 + L2 LINE L2 3102 3311 -2 298 329 77 51 chr1 32490268 32490502 -249703162 + MIR SINE MIR 13 252 -10 209 277 178 50 chr1 32490541 32490642 -249703022 + MIR SINE MIR 79 192 -70 243 143 39 26 chr1 32490722 32490799 -249702865 + (TTA)n Simple_repeat Simple_repeat 3 80 0 395 200 105 0 chr1 32490810 32490905 -249702759 - MIR SINE MIR -73 189 85 271 284 164 9 chr1 32491448 32491564 -249702100 - L2 LINE L2 -12 3260 3127 195 42 0 0 chr1 32492044 32492068 -249701596 + (CA)n Simple_repeat Simple_repeat 2 25 0 211 350 0 0 chr1 32492088 32492168 -249701496 + (CA)n Simple_repeat Simple_repeat 1 80 0 265 269 42 93 chr1 32492214 32492407 -249701257 + L2 LINE L2 3110 3292 -21 676 278 85 5 chr1 32492748 32492960 -249700704 - MIR SINE MIR -3 259 31 307 260 27 0 chr1 32493154 32493227 -249700437 - MIR3 SINE MIR -15 193 119 217 239 0 0 chr1 32493827 32493873 -249699791 - L2 LINE L2 -1 3312 3267 233 208 19 19 chr1 32494679 32494732 -249698932 - L2 LINE L2 0 3313 3261 844 316 16 0 chr1 32494734 32494987 -249698677 + MIR SINE MIR 6 262 0 210 318 34 11 chr1 32494955 32495043 -249698621 - L2 LINE L2 -22 3250 3161 * 278 299 23 0 chr1 32495062 32495149 -249698515 - MIR SINE MIR -119 143 55 562 236 65 63 chr1 32495154 32495538 -249698126 - MLT1L LTR MaLR -3 586 137 191 125 25 0 chr1 32496353 32496393 -249697271 + (GAGTG)n Simple_repeat Simple_repeat 3 43 0 203 200 32 53 chr1 32496408 32496503 -249697161 + (GAGTG)n Simple_repeat Simple_repeat 3 95 0 * 396 199 11 70 chr1 32496457 32496643 -249697021 + (GGGTG)n Simple_repeat Simple_repeat 3 177 0 * 415 224 16 38 chr1 32496541 32496773 -249696891 + GA-rich Low_complexity Low_complexity 1 226 0 526 282 46 11 chr1 32497812 32497986 -249695678 - MIR SINE MIR 0 262 83 481 276 16 0 chr1 32498041 32498164 -249695500 - MIR3 SINE MIR -26 182 58 535 317 27 0 chr1 32498860 32499046 -249694618 - ERVL LTR ERVL -1804 3960 3770 1192 211 83 40 chr1 32499147 32499545 -249694119 + MLT1C LTR MaLR 53 467 0 954 233 125 17 chr1 32499810 32500098 -249693566 - LTR36 LTR ERV1 0 611 293 567 148 0 101 chr1 32500181 32500330 -249693334 - LTR36 LTR ERV1 -477 134 1 445 211 2 4 chr1 32500330 32500432 -249693232 - ERVL LTR ERVL -2327 3327 3246 445 345 47 12 chr1 32500688 32500943 -249692721 - ERVL LTR ERVL -5181 583 320 323 285 101 14 chr1 32501227 32501357 -249692307 - LTR33A LTR ERVL 0 523 367 2505 93 0 0 chr1 32501357 32501667 -249691997 + AluSq SINE Alu 1 310 -3 323 285 101 14 chr1 32501667 32501743 -249691921 - LTR33A LTR ERVL -156 367 299 246 337 53 0 chr1 32501902 32501997 -249691667 - LTR33A LTR ERVL -363 160 61 413 292 71 7 chr1 32502121 32502275 -249691389 + MIR SINE MIR 79 242 -20 454 260 20 27 chr1 32502280 32502426 -249691238 + MIR3 SINE MIR 42 186 -22 270 270 100 10 chr1 32502991 32503091 -249690573 + MIR SINE MIR 50 158 -104 435 314 30 96 chr1 32503245 32503685 -249689979 + MLT1K LTR MaLR 125 535 -53 350 290 69 0 chr1 32503807 32503938 -249689726 + L2 LINE L2 3123 3262 -10 207 0 0 0 chr1 32503940 32503963 -249689701 + (GGGA)n Simple_repeat Simple_repeat 3 25 0 325 283 64 43 chr1 32504188 32504375 -249689289 - L2 LINE L2 -44 3269 3079 504 280 63 40 chr1 32504454 32504654 -249689010 - LTR33 LTR ERVL -309 212 24 355 299 121 0 chr1 32504925 32505082 -249688582 + MIR3 SINE MIR 12 187 -21 545 270 7 0 chr1 32505400 32505537 -249688127 + MIR3 SINE MIR 49 186 -22 238 353 82 0 chr1 32505626 32505748 -249687916 + MIR SINE MIR 16 147 -115 992 231 75 14 chr1 32505752 32506098 -249687566 - L1MEc LINE L1 -4155 2670 2304 1049 222 24 0 chr1 32506135 32506383 -249687281 - L1MD3 LINE L1 -2157 5838 5585 1644 244 47 4 chr1 32506768 32507263 -249686401 - L1MEc LINE L1 -4562 2084 1569 238 225 67 22 chr1 32507352 32507441 -249686223 + L1MEc LINE L1 1875 1967 -4429 1241 225 9 23 chr1 32507448 32507795 -249685869 - L1MEc LINE L1 -4986 1556 1215 3185 240 32 21 chr1 32507841 32508234 -249685430 - L1MEc LINE L1 -5711 831 444 294 29 0 0 chr1 32508234 32508269 -249685395 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3185 240 32 21 chr1 32508269 32508696 -249684968 - L1MEc LINE L1 -6098 444 2 260 341 23 17 chr1 32508811 32508987 -249684677 - L1MEc LINE L1 -4934 1450 1274 2662 251 55 13 chr1 32508988 32509700 -249683964 - L1MEc LINE L1 -5620 943 202 2119 92 11 21 chr1 32509887 32510211 -249683453 + AluSx SINE Alu 1 321 0 507 317 85 50 chr1 32511769 32512088 -249681576 - MLT1K LTR MaLR -2 586 257 1732 152 92 0 chr1 32512096 32512412 -249681252 + MSTB LTR MaLR 1 345 -81 247 268 31 31 chr1 32512412 32512509 -249681155 + CT-rich Low_complexity Low_complexity 1 97 0 630 318 40 8 chr1 32513117 32513369 -249680295 - MIR SINE MIR 0 262 3 344 214 111 40 chr1 32513704 32513830 -249679834 - L2 LINE L2 0 3313 3179 180 281 61 12 chr1 32513823 32513905 -249679759 + MIR3 SINE MIR 93 178 -30 * 408 97 0 0 chr1 32514355 32514417 -249679247 + (TG)n Simple_repeat Simple_repeat 1 62 0 503 342 48 0 chr1 32514586 32514814 -249678850 - MIR SINE MIR -3 259 21 437 252 89 57 chr1 32514850 32515096 -249678568 - MIR SINE MIR -7 255 2 1554 163 8 12 chr1 32515346 32515597 -249678067 + AluSx SINE Alu 3 252 -60 501 272 78 61 chr1 32516010 32516259 -249677405 - MIR SINE MIR -6 256 5 200 306 0 0 chr1 32516703 32516765 -249676899 + MIR3 SINE MIR 144 205 -3 499 214 38 9 chr1 32516985 32517145 -249676519 + MIR SINE MIR 30 192 -62 377 185 62 0 chr1 32517561 32517642 -249676022 + MIR SINE MIR 79 164 -98 212 315 39 31 chr1 32517681 32517808 -249675856 - L2 LINE L2 -9 3304 3177 409 244 0 0 chr1 32518943 32519025 -249674639 + MER81 DNA DNA 1 82 -32 7890 197 61 27 chr1 32519095 32520793 -249672871 - MER52A LTR ERV1 0 1755 1 1668 196 33 84 chr1 32521087 32521540 -249672124 + MER63B DNA MER1_type 1 430 -6 368 186 0 0 chr1 32522010 32522080 -249671584 - MIR SINE MIR -58 150 81 261 320 55 16 chr1 32522409 32522665 -249670999 + L2 LINE L2 2600 2865 -449 196 284 34 23 chr1 32522960 32523048 -249670616 + L2 LINE L2 3184 3272 0 3229 80 27 5 chr1 32523067 32523515 -249670149 + LTR22A LTR ERVK 1 458 0 2233 144 26 8 chr1 32523515 32523897 -249669767 + HERVK22 LTR ERVK 1 389 -6448 353 289 138 67 chr1 32523943 32524241 -249669423 - L2 LINE L2 -99 3173 2855 238 333 67 0 chr1 32524590 32524680 -249668984 + MIR SINE MIR 19 114 -148 272 287 23 0 chr1 32524764 32524851 -249668813 - MIR SINE MIR -7 255 167 206 129 0 0 chr1 32525441 32525472 -249668192 + MIR SINE MIR 112 142 -66 297 282 16 32 chr1 32525496 32525620 -249668044 - MIR3 SINE MIR -13 195 74 311 270 44 33 chr1 32525656 32525789 -249667875 + MER5A DNA MER1_type 49 169 -9 263 261 92 31 chr1 32525809 32525939 -249667725 + MLT1K LTR MaLR 204 341 -247 244 360 10 0 chr1 32526168 32526268 -249667396 + MIR3 SINE MIR 105 205 -3 315 294 32 8 chr1 32526617 32526743 -249666921 - MIR3 SINE MIR -77 131 3 200 33 0 33 chr1 32526847 32526877 -249666787 + (GGGGA)n Simple_repeat Simple_repeat 3 31 0 215 311 98 16 chr1 32526965 32527087 -249666577 + MIR SINE MIR 121 252 -10 402 289 0 63 chr1 32527423 32527582 -249666082 + MIR SINE MIR 45 193 -69 474 187 1 103 chr1 32528402 32528548 -249665116 - MIR SINE MIR -71 137 57 3140 162 29 2 chr1 32529491 32530113 -249663551 + L1MA4 LINE L1 5662 6300 0 2363 153 23 0 chr1 32530143 32530535 -249663129 - LOR1a LTR ERV1 -2 495 95 1077 156 0 0 chr1 32530537 32530697 -249662967 + AluSg/x SINE Alu 153 312 0 717 60 0 10 chr1 32530697 32530797 -249662867 - LOR1b LTR ERV1 -362 99 1 725 286 158 56 chr1 32531093 32532221 -249661443 - HAL1b LINE L1 -12 1336 94 433 281 11 51 chr1 32533587 32533765 -249659899 - MER117 DNA MER1_type -16 181 11 350 292 164 18 chr1 32533810 32533981 -249659683 + MIR SINE MIR 33 228 -34 252 304 65 0 chr1 32534094 32534186 -249659478 + MER117 DNA MER1_type 65 162 -35 208 294 44 15 chr1 32534504 32534572 -249659092 + MIR3 SINE MIR 132 201 -7 826 76 69 8 chr1 32534621 32534752 -249658912 - L1MB3 LINE L1 -4 6179 6041 1659 224 30 8 chr1 32534752 32535113 -249658551 - MLT1A2 LTR MaLR 0 374 6 5468 190 22 36 chr1 32535120 32536949 -249656715 - L1MB3 LINE L1 -139 6044 4261 306 50 0 0 chr1 32536949 32536989 -249656675 + (TG)n Simple_repeat Simple_repeat 1 40 0 5468 190 22 36 chr1 32536989 32537233 -249656431 - L1MB3 LINE L1 -1922 4261 4015 444 292 77 29 chr1 32537584 32537793 -249655871 + L3 LINE CR1 1280 1498 -79 311 298 89 0 chr1 32537782 32537906 -249655758 + MIR SINE MIR 14 148 -114 * 294 292 34 0 chr1 32538514 32538603 -249655061 + L2 LINE L2 3203 3294 -19 200 247 79 34 chr1 32538723 32538812 -249654852 - L2 LINE L2 -635 2679 2587 986 269 21 65 chr1 32538904 32539332 -249654332 - MLT1I LTR MaLR 0 409 1 3828 278 67 17 chr1 32539412 32540548 -249653116 + L1MB8 LINE L1 1 1193 -5666 * 4922 186 18 44 chr1 32540545 32541290 -249652374 + L1MB8 LINE L1 4913 5676 -1313 2661 118 3 0 chr1 32541290 32541653 -249652011 + THE1B LTR MaLR 1 364 0 4922 186 18 44 chr1 32541653 32542093 -249651571 + L1MB8 LINE L1 5676 6126 -863 203 0 37 0 chr1 32542093 32542120 -249651544 + (TA)n Simple_repeat Simple_repeat 2 29 0 4922 186 18 44 chr1 32542120 32542250 -249651414 + L1MB8 LINE L1 6126 6258 -731 2264 75 7 0 chr1 32542250 32542542 -249651122 + AluY SINE Alu 1 294 -17 4922 186 18 44 chr1 32542542 32543357 -249650307 + L1MB8 LINE L1 6258 6989 0 6239 226 46 34 chr1 32543398 32545256 -249648408 + L1M4 LINE L1 16 1888 -4758 1937 77 0 8 chr1 32545255 32545516 -249648148 - L1P LINE L1 -1052 5094 4836 * 1067 46 0 0 chr1 32545516 32545641 -249648023 + L1PA8 LINE L1 6036 6165 -7 481 168 92 60 chr1 32545679 32545864 -249647800 - Charlie1 DNA MER1_type -45 2716 2526 458 267 5 51 chr1 32545864 32546059 -249647605 + L1M4 LINE L1 1914 2099 -4547 405 269 61 61 chr1 32546101 32546356 -249647308 + L1M4 LINE L1 2214 2473 -4173 2023 96 4 7 chr1 32546356 32546657 -249647007 + AluSc SINE Alu 1 300 0 405 269 61 61 chr1 32546657 32546696 -249646968 + L1M4 LINE L1 2472 2510 -4136 232 298 33 58 chr1 32547006 32547127 -249646537 - MER5A DNA MER1_type -10 179 62 229 250 29 15 chr1 32547333 32547401 -249646263 + MIR SINE MIR 194 262 0 498 288 68 31 chr1 32547459 32547622 -249646042 - MIR SINE MIR -37 171 1 366 263 142 57 chr1 32547951 32548159 -249645505 + MIR SINE MIR 40 260 -2 247 293 57 29 chr1 32548596 32548736 -249644928 + MIR SINE MIR 41 184 -78 243 269 239 36 chr1 32548791 32548958 -249644706 - MIR SINE MIR -19 243 43 267 297 29 101 chr1 32549626 32549764 -249643900 + MIR SINE MIR 18 145 -117 186 196 59 172 chr1 32550122 32550326 -249643338 - L2 LINE L2 -164 3149 2969 364 260 92 14 chr1 32550375 32550529 -249643135 + MIR SINE MIR 38 201 -61 477 0 0 0 chr1 32551090 32551143 -249642521 + (TG)n Simple_repeat Simple_repeat 1 53 0 203 244 26 26 chr1 32551145 32551223 -249642441 + (CAGAGA)n Simple_repeat Simple_repeat 3 80 0 727 186 0 0 chr1 32551226 32551344 -249642320 + FLAM_C SINE Alu 1 118 -15 23 0 0 0 chr1 32551344 32551367 -249642297 + AT_rich Low_complexity Low_complexity 1 23 0 279 79 0 0 chr1 32551523 32551561 -249642103 + (GGA)n Simple_repeat Simple_repeat 3 40 0 249 33 0 0 chr1 32551566 32551596 -249642068 + (ATG)n Simple_repeat Simple_repeat 2 31 0 3787 159 243 16 chr1 32552229 32553107 -249640557 + MER52C LTR ERV1 202 1278 0 536 222 206 21 chr1 32553416 32553610 -249640054 - MIR SINE MIR -13 249 20 270 171 0 0 chr1 32553915 32553985 -249639679 + (CA)n Simple_repeat Simple_repeat 1 70 0 225 0 0 0 chr1 32554053 32554078 -249639586 + (CA)n Simple_repeat Simple_repeat 1 25 0 216 250 42 0 chr1 32554104 32554152 -249639512 - MIR SINE MIR -174 88 39 360 256 73 44 chr1 32554328 32554465 -249639199 - LTR16B LTR ERVL -2 462 322 2885 83 16 58 chr1 32555107 32555219 -249638445 + MER84 LTR ERVI 3 118 -389 2325 77 0 0 chr1 32555219 32555517 -249638147 + AluSc SINE Alu 1 298 -11 2885 83 16 58 chr1 32555517 32555837 -249637827 + MER84 LTR ERVI 118 417 -90 1363 87 0 5 chr1 32555838 32556022 -249637642 + L1PA10 LINE L1 5975 6157 -11 713 109 20 0 chr1 32556157 32556258 -249637406 + MER84 LTR ERVI 405 507 0 405 290 127 19 chr1 32556334 32556697 -249636967 - MLT1J2 LTR MaLR -14 428 33 286 306 139 7 chr1 32556799 32556943 -249636721 + MER5A DNA MER1_type 27 189 0 467 135 122 0 chr1 32557726 32557800 -249635864 - MER63 DNA MER1_type -84 752 44 452 149 122 0 chr1 32558113 32558187 -249635477 - MER63 DNA MER1_type -310 752 44 1820 164 132 78 chr1 32558709 32559186 -249634478 - MLT1D LTR MaLR -2 503 1 690 193 16 152 chr1 32559186 32559430 -249634234 - MLT1D-int LTR MaLR 0 1371 1161 313 111 0 0 chr1 32559458 32559503 -249634161 - MLT2F LTR ERVL 0 663 619 246 287 139 10 chr1 32559506 32559607 -249634057 - MLT2F LTR ERVL -366 297 184 867 94 86 0 chr1 32561598 32561726 -249631938 + MER85 DNA T2_type 1 139 0 520 326 41 5 chr1 32561790 32562008 -249631656 + MIR SINE MIR 13 238 -24 2176 242 68 58 chr1 32563077 32563750 -249629914 + MER115 DNA AcHobo 5 684 -9 258 338 13 0 chr1 32564191 32564268 -249629396 - MIR SINE MIR -83 125 48 295 229 14 0 chr1 32564360 32564430 -249629234 + MLT2B3 LTR ERVL 1 71 -483 11635 24 7 1 chr1 32564628 32566488 -249627176 - L1PA5 LINE L1 -255 5899 4035 8002 122 14 28 chr1 32566488 32567755 -249625909 - L1P LINE L1 -4338 1808 560 4313 66 0 0 chr1 32567755 32568287 -249625377 + L1PA6 LINE L1 5614 6145 -9 1065 235 56 84 chr1 32568332 32569296 -249624368 - L1MDa LINE L1 -4494 1767 606 447 289 71 77 chr1 32569431 32570097 -249623567 + L2 LINE L2 2619 3272 -41 434 209 139 57 chr1 32570226 32570384 -249623280 + MLT1K LTR MaLR 347 517 -71 334 269 126 18 chr1 32570544 32570711 -249622953 + HAL1 LINE L1 2301 2485 -22 209 373 109 0 chr1 32571584 32571694 -249621970 + L2 LINE L2 3151 3272 0 538 254 86 43 chr1 32572058 32572290 -249621374 - MLT1K LTR MaLR 0 588 347 2290 249 77 41 chr1 32573425 32574162 -249619502 - L1ME1 LINE L1 -4 6162 5367 6666 132 101 12 chr1 32574162 32575355 -249618309 - HSMAR2 DNA Mariner 0 1302 3 2290 249 77 41 chr1 32575355 32575623 -249618041 - L1ME1 LINE L1 -799 5367 5110 259 281 271 0 chr1 32575683 32575779 -249617885 - L2 LINE L2 -15 3257 3136 1031 236 83 50 chr1 32575814 32576353 -249617311 + L2 LINE L2 2725 3285 -28 512 302 71 32 chr1 32576353 32576605 -249617059 + MIR SINE MIR 1 262 0 1707 143 15 0 chr1 32576690 32576963 -249616701 - LTR26 LTR ERV1 0 603 327 1623 81 47 111 chr1 32576964 32577261 -249616403 - LTR66 LTR ERVL -1 609 332 507 141 0 54 chr1 32577263 32577355 -249616309 - LTR66 LTR ERVL -210 400 314 * 3278 68 0 0 chr1 32577335 32577734 -249615930 - LTR66 LTR ERVL -211 399 1 2139 116 44 0 chr1 32577734 32578051 -249615613 - LTR26 LTR ERV1 -272 331 1 293 336 75 0 chr1 32578943 32579050 -249614614 - L2 LINE L2 -1 3271 3157 462 261 49 0 chr1 32579532 32579674 -249613990 + MLT1L LTR MaLR 119 267 -348 212 241 0 0 chr1 32579871 32579929 -249613735 + T-rich Low_complexity Low_complexity 2 59 0 259 250 0 0 chr1 32580089 32580141 -249613523 + LTR30 LTR ERV1 1 52 -670 873 175 35 123 chr1 32580141 32580565 -249613099 + LTR12 LTR ERV1 54 284 -430 374 155 68 97 chr1 32580565 32580668 -249612996 + LTR30 LTR ERV1 378 643 -79 586 144 0 0 chr1 32580668 32580758 -249612906 + LTR12 LTR ERV1 625 714 0 230 207 37 37 chr1 32580852 32580934 -249612730 + MIR SINE MIR 40 121 -87 273 313 71 0 chr1 32580955 32581067 -249612597 + L2 LINE L2 3147 3266 -6 2967 261 34 13 chr1 32581683 32581854 -249611810 + L1M4 LINE L1 2164 2330 -3816 1951 124 41 72 chr1 32581854 32582241 -249611423 - THE1C LTR MaLR 0 375 1 2967 261 34 13 chr1 32582241 32583357 -249610307 + L1M4 LINE L1 2330 3490 -2656 1166 184 5 0 chr1 32583406 32583629 -249610035 - AluSc SINE Alu 0 309 86 398 291 8 8 chr1 32583639 32583756 -249609908 + L1M4 LINE L1 3559 3675 -2471 2502 270 37 23 chr1 32584035 32584261 -249609403 + L1ME1 LINE L1 3318 3539 -2607 1785 94 0 0 chr1 32584261 32584485 -249609179 - AluSc SINE Alu 0 309 86 2502 270 37 23 chr1 32584485 32585336 -249608328 + L1ME1 LINE L1 3539 4410 -1736 2569 217 80 35 chr1 32585364 32586825 -249606839 + L1ME1 LINE L1 4553 6068 -98 280 197 15 0 chr1 32586834 32586900 -249606764 + L1MA10 LINE L1 6260 6326 -8 504 289 27 7 chr1 32587179 32587328 -249606336 - MIR3 SINE MIR -15 193 42 210 292 15 0 chr1 32587435 32587500 -249606164 - MIR SINE MIR -72 190 125 194 344 52 31 chr1 32588247 32588343 -249605321 + L2 LINE L2 2957 3054 -218 301 238 198 64 chr1 32588418 32588590 -249605074 + L1ME1 LINE L1 5970 6164 0 499 227 35 28 chr1 32588957 32589098 -249604566 + MIR3 SINE MIR 40 181 -27 273 381 51 20 chr1 32590003 32590200 -249603464 - MIR SINE MIR -59 203 1 231 240 93 0 chr1 32590630 32590705 -249602959 - MIR SINE MIR -70 192 111 305 221 105 0 chr1 32590724 32590810 -249602854 - MIR3 SINE MIR -25 183 89 209 256 0 0 chr1 32591696 32591739 -249601925 + (CTCA)n Simple_repeat Simple_repeat 1 43 0 190 270 56 34 chr1 32592390 32592479 -249601185 - L2 LINE L2 -228 3044 2954 191 292 0 0 chr1 32593376 32593448 -249600216 + MIR SINE MIR 51 122 -86 461 199 7 99 chr1 32594462 32594603 -249599061 + MLT1H LTR MaLR 422 549 0 628 306 101 6 chr1 32594603 32594930 -249598734 - L2 LINE L2 -27 3286 2929 202 325 84 0 chr1 32594992 32595075 -249598589 - MIR SINE MIR 0 262 173 648 299 42 103 chr1 32595090 32595642 -249598022 - MLT1K LTR MaLR 0 588 71 1797 178 7 0 chr1 32595741 32596027 -249597637 - AluJo SINE Alu -24 288 1 358 259 27 9 chr1 32596606 32596718 -249596946 - MIR3 SINE MIR -8 200 87 730 263 26 5 chr1 32596730 32596924 -249596740 - MIR SINE MIR -19 243 46 386 297 91 14 chr1 32597282 32597491 -249596173 + LTR33A LTR ERVL 299 523 0 361 265 93 0 chr1 32597940 32598123 -249595541 + MIR SINE MIR 11 212 -50 398 263 78 37 chr1 32599843 32600086 -249593578 + L2 LINE L2 2553 2805 -509 340 278 85 90 chr1 32601806 32602241 -249591423 - L2 LINE L2 -4 3268 2836 257 303 60 24 chr1 32603616 32603907 -249589757 + MLT1K LTR MaLR 7 335 -253 369 123 0 0 chr1 32603975 32604040 -249589624 + (CA)n Simple_repeat Simple_repeat 2 66 0 279 257 191 33 chr1 32604933 32605085 -249588579 - MER5B DNA MER1_type -2 176 1 1037 276 67 63 chr1 32605253 32605852 -249587812 + MLT2F LTR ERVL 3 603 -60 692 276 136 85 chr1 32606641 32607133 -249586531 + LTR33A LTR ERVL 2 518 -5 2498 115 3 3 chr1 32607634 32607998 -249585666 - THE1B LTR MaLR 0 364 1 624 305 31 13 chr1 32608451 32608677 -249584987 - MIR SINE MIR -27 235 6 304 233 17 78 chr1 32608680 32608796 -249584868 - L3 LINE CR1 -77 1500 1392 229 314 220 13 chr1 32609438 32609597 -249584067 - MIR SINE MIR -1 261 70 2127 317 42 22 chr1 32610276 32611086 -249582578 - HERV16 LTR ERVL -2347 2649 1824 1443 213 36 17 chr1 32611211 32611725 -249581939 - L1MD2 LINE L1 -1 6358 5783 1297 296 172 11 chr1 32611944 32612203 -249581461 - HERV16 LTR ERVL -3670 1326 1110 1424 194 114 39 chr1 32612203 32612615 -249581049 - LTR47B LTR ERVL 0 443 1 1297 296 172 11 chr1 32612615 32612989 -249580675 - HERV16 LTR ERVL -3886 1110 591 267 337 0 0 chr1 32613120 32613203 -249580461 - HERV16 LTR ERVL -4539 457 375 416 329 76 22 chr1 32613388 32613613 -249580051 - HERV16 LTR ERVL -4750 246 10 300 389 25 5 chr1 32613633 32613836 -249579828 - LTR16B LTR ERVL -2 462 256 331 313 183 18 chr1 32613886 32614110 -249579554 - MIR SINE MIR 0 262 2 460 311 48 5 chr1 32614280 32614489 -249579175 + Charlie8 DNA MER1_type 16 233 -2184 230 228 88 0 chr1 32614553 32614610 -249579054 - MLT1I LTR MaLR -10 399 338 240 360 7 15 chr1 32614700 32614836 -249578828 - MLT1I LTR MaLR -203 206 72 226 200 12 94 chr1 32614875 32614960 -249578704 + LTR65 LTR ERV1 224 301 -368 309 305 246 20 chr1 32614960 32615163 -249578501 - MIR SINE MIR -13 249 1 290 85 0 21 chr1 32615297 32615344 -249578320 + (TG)n Simple_repeat Simple_repeat 2 47 0 304 232 0 0 chr1 32615369 32615425 -249578239 - L2 LINE L2 -9 3304 3249 205 258 113 10 chr1 32615458 32615555 -249578109 - MIR SINE MIR -67 141 35 476 334 49 13 chr1 32615788 32616093 -249577571 + L1ME4a LINE L1 5628 5943 -178 208 257 0 19 chr1 32616151 32616256 -249577408 + GA-rich Low_complexity Low_complexity 2 104 0 467 271 99 17 chr1 32616262 32616443 -249577221 - MIR SINE MIR -29 233 38 254 320 0 0 chr1 32616583 32616644 -249577020 - MIR SINE MIR -82 180 117 1576 216 10 3 chr1 32616644 32616950 -249576714 + AluJo SINE Alu 1 308 -4 254 320 0 0 chr1 32616950 32616963 -249576701 - MIR SINE MIR -144 118 106 210 216 129 36 chr1 32618068 32618176 -249575488 - MIR SINE MIR -109 153 34 271 244 77 26 chr1 32618451 32618529 -249575135 - L2 LINE L2 0 3313 3232 2312 106 0 3 chr1 32618623 32618916 -249574748 - AluSg SINE Alu -18 292 1 271 330 95 14 chr1 32619696 32619907 -249573757 - MIR SINE MIR -12 250 20 2301 117 7 0 chr1 32620026 32620334 -249573330 - AluSx SINE Alu -2 310 1 511 326 22 6 chr1 32620365 32620543 -249573121 - MIR SINE MIR -53 209 29 488 263 26 19 chr1 32620681 32620837 -249572827 + MIR SINE MIR 51 207 -55 638 200 84 13 chr1 32621062 32621217 -249572447 + L2 LINE L2 2891 3056 -257 484 309 20 0 chr1 32621614 32621763 -249571901 - MIR SINE MIR -97 165 14 372 262 34 136 chr1 32622031 32622325 -249571339 - L2 LINE L2 -4 3268 3005 299 176 0 0 chr1 32623243 32623294 -249570370 + MIR SINE MIR 82 132 -76 269 191 56 127 chr1 32624047 32624173 -249569491 - L2 LINE L2 -237 3035 2919 435 228 11 0 chr1 32624333 32624425 -249569239 + MIR SINE MIR 79 171 -91 540 364 19 5 chr1 32624634 32624840 -249568824 + MIR SINE MIR 17 225 -37 253 301 40 15 chr1 32624967 32625228 -249568436 + L1M1 LINE L1 1754 2093 -4289 869 225 99 40 chr1 32625249 32625360 -249568304 + L1M3c LINE L1 922 1025 -5116 189 74 0 0 chr1 32625360 32625387 -249568277 + (CAA)n Simple_repeat Simple_repeat 1 27 0 869 225 99 40 chr1 32625387 32625493 -249568171 + L1M3c LINE L1 1025 1123 -5018 2267 111 6 19 chr1 32625493 32625809 -249567855 - AluSq SINE Alu -1 312 1 869 225 99 40 chr1 32625809 32625892 -249567772 + L1M3c LINE L1 1123 1241 -4900 314 192 141 13 chr1 32625893 32625971 -249567693 + MIR3 SINE MIR 78 165 -43 386 68 0 17 chr1 32626418 32626477 -249567187 + (CAT)n Simple_repeat Simple_repeat 3 60 0 400 204 85 42 chr1 32626855 32627003 -249566661 - MIR SINE MIR -61 147 3 1522 215 106 63 chr1 32628142 32628187 -249565477 - MLT2B2 LTR ERVL 0 515 473 1210 23 23 6 chr1 32628187 32628358 -249565306 + (TAGA)n Simple_repeat Simple_repeat 2 175 0 1522 215 106 63 chr1 32628358 32628805 -249564859 - MLT2B2 LTR ERVL -42 473 2 242 298 124 16 chr1 32628892 32629013 -249564651 + L2 LINE L2 3175 3308 -5 214 231 0 0 chr1 32629013 32629052 -249564612 + polypurine Low_complexity Low_complexity 1 39 0 262 254 64 36 chr1 32629708 32629818 -249563846 + MIR SINE MIR 33 145 -63 507 248 41 0 chr1 32629823 32629944 -249563720 - L2 LINE L2 -1 3312 3187 303 231 77 0 chr1 32630100 32630204 -249563460 - MIR SINE MIR -70 192 81 360 264 74 8 chr1 32630457 32630578 -249563086 + MIR SINE MIR 100 228 -34 280 260 112 54 chr1 32630673 32630896 -249562768 + L2 LINE L2 3073 3308 -5 386 265 36 54 chr1 32630942 32631108 -249562556 - MLT1J2 LTR MaLR -28 422 260 296 316 44 9 chr1 32631339 32631453 -249562211 + L2 LINE L2 2943 3060 -212 327 200 54 8 chr1 32631658 32631757 -249561907 + MIR SINE MIR 93 196 -66 1073 258 73 23 chr1 32631763 32632147 -249561517 + MLT1H LTR MaLR 1 403 -146 837 297 71 28 chr1 32632932 32633326 -249560338 + MER115 DNA AcHobo 24 434 -259 303 313 20 27 chr1 32633599 32633749 -249559915 + MIR SINE MIR 2 150 -112 476 211 12 84 chr1 32633752 32633918 -249559746 + MER46C DNA MER2_type 3 156 -182 502 225 23 58 chr1 32634031 32634289 -249559375 + L1MC5 LINE L1 7452 7700 -261 2328 126 0 0 chr1 32634598 32634908 -249558756 + AluSg SINE Alu 1 310 0 1905 209 51 53 chr1 32635399 32635832 -249557832 + MLT2B1 LTR ERVL 1 434 -86 2265 126 0 0 chr1 32635832 32636134 -249557530 - AluSx SINE Alu -10 302 1 1905 209 51 53 chr1 32636134 32636170 -249557494 + MLT2B1 LTR ERVL 434 469 -51 585 270 22 11 chr1 32636681 32636859 -249556805 - MIR SINE MIR -43 219 40 350 208 104 28 chr1 32638008 32638114 -249555550 + MER81 DNA DNA 1 114 0 559 312 78 9 chr1 32638235 32638466 -249555198 - MIR SINE MIR -13 249 3 737 248 218 37 chr1 32638522 32638986 -249554678 - MLT1H LTR MaLR -1 548 1 345 297 36 0 chr1 32639089 32639200 -249554464 + L2 LINE L2 2946 3060 -253 501 62 0 0 chr1 32639367 32639432 -249554232 + (GGGA)n Simple_repeat Simple_repeat 3 67 0 186 227 0 0 chr1 32639861 32639905 -249553759 - L2 LINE L2 -215 3057 3014 433 256 267 5 chr1 32640094 32640289 -249553375 - MIR SINE MIR 0 262 17 634 276 93 39 chr1 32640316 32640694 -249552970 - L2 LINE L2 -6 3307 2884 2719 99 41 7 chr1 32640694 32641108 -249552556 - MSTA LTR MaLR 0 428 1 634 276 93 39 chr1 32641108 32641209 -249552455 - L2 LINE L2 -429 2884 2790 1136 256 105 19 chr1 32641210 32641675 -249551989 + LTR33 LTR ERVL 1 505 -16 3223 114 55 18 chr1 32642151 32642659 -249551005 + MER1A DNA MER1_type 1 527 0 1475 202 73 3 chr1 32643536 32643877 -249549787 - MLT1A1 LTR MaLR 0 365 1 589 281 88 44 chr1 32643937 32644254 -249549410 - L2 LINE L2 -2 3311 2981 2005 143 53 36 chr1 32644273 32644453 -249549211 + THE1B LTR MaLR 1 176 -188 2287 119 0 3 chr1 32644453 32644765 -249548899 - AluSx SINE Alu -1 311 1 2005 143 53 36 chr1 32644765 32644942 -249548722 + THE1B LTR MaLR 176 364 0 663 273 45 73 chr1 32645061 32645391 -249548273 + L2 LINE L2 2952 3272 0 807 247 54 32 chr1 32645546 32646024 -249547640 + MLT1F1 LTR MaLR 7 567 0 2324 71 14 3 chr1 32646190 32646473 -249547191 + AluY SINE Alu 1 286 -25 514 157 31 42 chr1 32646526 32646787 -249546877 + GA-rich Low_complexity Low_complexity 1 258 0 427 339 145 21 chr1 32646873 32647259 -249546405 + MLT1K LTR MaLR 145 578 -10 1589 179 32 56 chr1 32647442 32647816 -249545848 + MLT1B LTR MaLR 4 368 -22 483 314 23 6 chr1 32647916 32648088 -249545576 - L2 LINE L2 -194 3078 2904 242 286 13 26 chr1 32648993 32649070 -249544594 - MIR SINE MIR -79 183 108 1044 293 53 30 chr1 32649448 32649878 -249543786 - MLT1J2 LTR MaLR -10 440 1 257 316 26 0 chr1 32649878 32649954 -249543710 - MIR SINE MIR -90 118 41 368 264 140 73 chr1 32650516 32650875 -249542789 + L1ME4a LINE L1 5596 5998 -123 237 33 0 0 chr1 32650875 32650905 -249542759 + (CA)n Simple_repeat Simple_repeat 2 31 0 368 264 140 73 chr1 32650905 32651037 -249542627 + L1ME4a LINE L1 5998 6120 -1 1858 220 8 25 chr1 32651250 32651646 -249542018 - MSTD LTR MaLR 0 396 8 659 311 17 40 chr1 32651868 32652167 -249541497 - MLT1H LTR MaLR -245 304 13 485 277 42 55 chr1 32652275 32652582 -249541082 - L1ME4a LINE L1 -51 6070 5768 479 215 11 0 chr1 32652585 32652678 -249540986 + MER33 DNA MER1_type 1 94 -230 1937 139 11 0 chr1 32652690 32652963 -249540701 + AluSx SINE Alu 1 276 -36 225 59 29 0 chr1 32652968 32653002 -249540662 + U3 snRNA snRNA 1 35 -182 1019 122 61 0 chr1 32653009 32653223 -249540441 + MER33 DNA MER1_type 121 347 -16 369 241 26 38 chr1 32653375 32653500 -249540164 - MIR SINE MIR -58 150 34 465 274 20 13 chr1 32653527 32653680 -249539984 - L1ME4a LINE L1 -440 5681 5528 215 375 12 0 chr1 32653681 32653761 -249539903 - L2 LINE L2 -10 3262 3182 183 339 85 7 chr1 32653904 32654187 -249539477 - L2 LINE L2 -190 3123 2819 2073 234 20 27 chr1 32654238 32654831 -249538833 - MER69 DNA AcHobo 0 2526 1938 379 211 133 0 chr1 32654825 32654915 -249538749 - MER69 DNA AcHobo -1123 103 2 * 187 246 291 25 chr1 32654943 32655142 -249538522 - L2 LINE L2 -615 2699 2448 799 293 119 23 chr1 32656211 32657044 -249536620 - L2 LINE L2 -5 3308 2396 2085 117 11 7 chr1 32657942 32658348 -249535316 + AluSx SINE Alu 1 407 0 1155 65 18 6 chr1 32658357 32658527 -249535137 + (GAAA)n Simple_repeat Simple_repeat 3 174 0 404 37 19 0 chr1 32659406 32659460 -249534204 + (TG)n Simple_repeat Simple_repeat 2 56 0 2204 135 0 3 chr1 32659477 32659789 -249533875 + AluSx SINE Alu 1 311 -1 302 339 43 26 chr1 32659836 32659951 -249533713 + HAL1b LINE L1 85 201 -1147 219 409 83 0 chr1 32659986 32660118 -249533546 - L2 LINE L2 -18 3254 3112 246 310 69 47 chr1 32660223 32660355 -249533309 - MIR SINE MIR -75 133 3 1692 122 0 4 chr1 32661408 32661645 -249532019 + AluSq SINE Alu 71 306 -7 372 284 92 0 chr1 32662297 32662438 -249531226 - MIR3 SINE MIR -22 186 33 626 312 36 20 chr1 32662724 32662971 -249530693 - MIR SINE MIR -2 260 10 199 267 81 109 chr1 32663726 32663947 -249529717 + MIR SINE MIR 48 262 0 441 301 29 0 chr1 32663993 32664129 -249529535 - MIR3 SINE MIR -60 148 9 2155 117 6 25 chr1 32664145 32664461 -249529203 - AluSx SINE Alu -2 310 1 275 333 2 45 chr1 32664756 32665077 -249528587 + CT-rich Low_complexity Low_complexity 3 390 0 2174 109 0 7 chr1 32665094 32665408 -249528256 - AluSx SINE Alu 0 312 1 357 306 35 12 chr1 32665409 32665582 -249528082 + CT-rich Low_complexity Low_complexity 2 178 0 229 236 95 23 chr1 32665992 32666086 -249527578 - MIR SINE MIR -67 141 41 481 313 62 70 chr1 32666705 32667220 -249526444 + LTR67 LTR ERVL 46 556 -1 915 220 11 0 chr1 32667408 32667585 -249526079 + MIR SINE MIR 8 186 -76 290 306 50 50 chr1 32668434 32668633 -249525031 + L2 LINE L2 2318 2516 -798 276 369 15 15 chr1 32668759 32668889 -249524775 + L2 LINE L2 3184 3313 0 332 294 135 0 chr1 32668890 32669016 -249524648 - MIR SINE MIR 0 262 120 589 108 118 0 chr1 32669039 32669141 -249524523 + AluSg/x SINE Alu 180 293 -16 309 270 9 27 chr1 32669142 32669253 -249524411 - MIR SINE MIR -84 124 16 305 321 9 0 chr1 32670192 32670298 -249523366 + MIR SINE MIR 30 136 -72 272 346 26 39 chr1 32670844 32671000 -249522664 - MIR SINE MIR -21 241 88 239 340 47 0 chr1 32671008 32671114 -249522550 - L2 LINE L2 -18 3254 3144 302 328 46 15 chr1 32671522 32671653 -249522011 - L2 LINE L2 0 3313 3179 446 282 82 39 chr1 32672144 32672399 -249521265 - L2 LINE L2 -63 3250 2985 207 292 0 14 chr1 32672775 32672847 -249520817 + C-rich Low_complexity Low_complexity 4 74 0 198 244 0 0 chr1 32673331 32673376 -249520288 - MIR SINE MIR -149 113 69 2403 164 40 6 chr1 32673642 32674111 -249519553 - MER66B LTR ERV1 0 486 2 13615 117 13 13 chr1 32674124 32675929 -249517735 - MER66B-int LTR ERV1 -22 6654 4847 4532 43 5 0 chr1 32675929 32676504 -249517160 - L1PA7 LINE L1 0 6154 5577 13615 117 13 13 chr1 32676504 32676750 -249516914 - MER66B-int LTR ERV1 -1828 4848 4603 1231 187 8 12 chr1 32676801 32677042 -249516622 - MER66B-int LTR ERV1 -3845 2831 2592 * 1692 103 0 0 chr1 32677041 32677274 -249516390 - MER66B-int LTR ERV1 -1482 5194 4962 * 7451 168 22 27 chr1 32677271 32678641 -249515023 - MER66B-int LTR ERV1 -4104 2572 1210 733 245 85 20 chr1 32678734 32678934 -249514730 - MER66B-int LTR ERV1 -3574 3102 2890 597 76 0 0 chr1 32678982 32679061 -249514603 - MADE1 DNA Mariner -1 79 1 3729 216 83 24 chr1 32679071 32679996 -249513668 - MER66B-int LTR ERV1 -5581 1095 116 2546 167 34 6 chr1 32680010 32680483 -249513181 - MER66B LTR ERV1 0 486 1 371 208 0 0 chr1 32680601 32680673 -249512991 + MIR SINE MIR 49 120 -142 707 304 111 21 chr1 32681668 32682124 -249511540 + L2 LINE L2 2784 3272 0 528 249 24 112 chr1 32682440 32682590 -249511074 + MLT1J LTR MaLR 5 167 -344 1182 144 195 104 chr1 32682590 32682773 -249510891 - MER4A LTR ERV1 -2 598 433 2098 164 0 0 chr1 32682773 32683083 -249510581 + AluSx SINE Alu 1 310 -2 1182 144 195 104 chr1 32683083 32683447 -249510217 - MER4A LTR ERV1 -167 433 1 528 249 24 112 chr1 32683447 32683482 -249510182 + MLT1J LTR MaLR 167 166 -345 309 118 0 0 chr1 32683482 32683533 -249510131 + (TG)n Simple_repeat Simple_repeat 2 52 0 528 249 24 112 chr1 32683533 32683595 -249510069 + MLT1J LTR MaLR 165 231 -280 381 279 0 10 chr1 32683603 32683707 -249509957 + MIR SINE MIR 63 165 -97 236 386 88 23 chr1 32683710 32683881 -249509783 - L3 LINE CR1 -496 1081 900 207 299 65 37 chr1 32684035 32684142 -249509522 + L2 LINE L2 3203 3312 -1 189 247 204 11 chr1 32684469 32684562 -249509102 + MIR SINE MIR 34 144 -118 249 286 63 71 chr1 32685867 32685993 -249507671 + L2 LINE L2 3181 3305 -8 369 0 0 0 chr1 32686188 32686229 -249507435 + (TG)n Simple_repeat Simple_repeat 2 42 0 2052 221 20 0 chr1 32686261 32686704 -249506960 - MER82 DNA MER2_type -1 652 201 1771 235 162 24 chr1 32686822 32687482 -249506182 - LTR1B LTR ERV1 -75 751 1 341 184 0 40 chr1 32687482 32687554 -249506110 - MER82 DNA MER2_type -447 206 138 3388 214 60 105 chr1 32687644 32687898 -249505766 - L1MC/D LINE L1 -743 5663 5399 3161 145 35 9 chr1 32687898 32688443 -249505221 - MER89 LTR ERV1 0 559 1 3388 214 60 105 chr1 32688443 32688898 -249504766 - L1MC/D LINE L1 -1007 5399 4925 479 162 0 0 chr1 32688898 32688972 -249504692 - AluJ/FRAM SINE Alu -15 297 224 3388 214 60 105 chr1 32688972 32689669 -249503995 - L1MC/D LINE L1 -1481 4925 4198 2284 98 3 0 chr1 32689669 32689997 -249503667 - AluSx SINE Alu 0 312 4 3388 214 60 105 chr1 32689997 32690151 -249503513 - L1MC/D LINE L1 -2208 4198 4039 216 86 0 0 chr1 32690151 32690186 -249503478 + (TTG)n Simple_repeat Simple_repeat 2 36 0 3388 214 60 105 chr1 32690186 32690727 -249502937 - L1MC/D LINE L1 -2367 4039 3733 2191 244 64 15 chr1 32690749 32692072 -249501592 - L1MDb LINE L1 -3014 3392 876 2097 94 23 55 chr1 32692162 32692469 -249501195 + AluSx SINE Alu 1 297 -15 382 310 9 0 chr1 32692807 32692920 -249500744 - MLT1G LTR MaLR -366 224 111 888 261 64 47 chr1 32693441 32693960 -249499704 + MLT1G LTR MaLR 18 560 -7 315 302 42 37 chr1 32694078 32694391 -249499273 + MLT1G-int LTR MaLR 292 601 -770 3324 151 31 0 chr1 32694782 32695337 -249498327 - LTR31 LTR ERV1 -1 618 47 807 274 120 33 chr1 32695832 32696347 -249497317 + MLT1G LTR MaLR 3 562 -5 3948 265 66 31 chr1 32696412 32698102 -249495562 - L2 LINE L2 -1 3312 1549 748 297 63 48 chr1 32698226 32698620 -249495044 - L1MC4a LINE L1 -1897 5911 5512 309 342 8 8 chr1 32699519 32699639 -249494025 + MIR3 SINE MIR 49 168 -40 3294 224 91 19 chr1 32699651 32700339 -249493325 - L1MC3 LINE L1 -15 7770 6988 216 67 0 0 chr1 32700339 32700369 -249493295 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 3294 224 91 19 chr1 32700369 32700671 -249492993 - L1MC3 LINE L1 -797 6988 6709 467 338 36 14 chr1 32700911 32701130 -249492534 + MLT1K LTR MaLR 41 264 -324 910 126 224 32 chr1 32701144 32701437 -249492227 - MER31B LTR ERV1 0 466 1 348 299 51 45 chr1 32701479 32701656 -249492008 + MLT1K LTR MaLR 338 515 -73 730 254 15 45 chr1 32701947 32702148 -249491516 - MIR3 SINE MIR -2 206 12 2491 194 13 13 chr1 32702401 32702946 -249490718 + LTR27 LTR ERV1 3 1253 -134 564 207 7 36 chr1 32702969 32703109 -249490555 + LTR27 LTR ERV1 501 636 0 198 322 56 11 chr1 32703168 32703258 -249490406 - MIR SINE MIR -18 244 151 262 228 13 76 chr1 32703337 32703416 -249490248 - MIR SINE MIR -107 155 82 452 206 56 54 chr1 32703983 32704161 -249489503 - MIR SINE MIR -52 156 15 502 311 14 0 chr1 32704764 32704912 -249488752 + MIR SINE MIR 2 151 -111 1073 190 29 110 chr1 32704985 32705596 -249488068 + MER4C LTR ERV1 1 465 0 451 232 24 24 chr1 32706565 32706690 -249486974 - MIR SINE MIR -119 143 19 2095 191 25 17 chr1 32708926 32709422 -249484242 + Tigger7 DNA MER2_type 34 2487 0 285 294 119 28 chr1 32709422 32709599 -249484065 - L3 LINE CR1 -319 1258 1066 322 260 163 8 chr1 32710075 32710198 -249483466 + MIR SINE MIR 13 154 -108 283 197 16 16 chr1 32710599 32710660 -249483004 - L2 LINE L2 -664 2650 2590 348 308 115 0 chr1 32711148 32711278 -249482386 - MIR SINE MIR -7 255 111 334 273 67 20 chr1 32711496 32711697 -249481967 + MIR SINE MIR 20 227 -35 306 231 13 39 chr1 32713079 32713157 -249480507 - L2 LINE L2 -649 2665 2590 306 271 178 8 chr1 32714066 32714195 -249479469 + MIR3 SINE MIR 41 191 -17 800 270 55 42 chr1 32714321 32714725 -249478939 + LTR16C LTR ERVL 83 491 0 438 229 0 0 chr1 32714876 32714959 -249478705 + MER47B DNA MER2_type 1 83 -335 3218 141 69 0 chr1 32714971 32715519 -249478145 + LTR38B LTR ERV1 1 586 -24 1559 162 44 0 chr1 32715536 32715807 -249477857 + MER47B DNA MER2_type 135 417 -1 1924 132 3 21 chr1 32715872 32716180 -249477484 + AluSq SINE Alu 1 303 0 413 250 22 43 chr1 32716394 32716578 -249477086 + (TGAA)n Simple_repeat Simple_repeat 1 180 0 253 326 17 17 chr1 32716568 32716743 -249476921 + (TAAA)n Simple_repeat Simple_repeat 3 177 0 * 195 250 33 17 chr1 32717286 32717346 -249476318 + MIR SINE MIR 92 152 -56 346 245 20 49 chr1 32717441 32717543 -249476121 + L2 LINE L2 3174 3272 0 293 277 134 27 chr1 32719088 32719200 -249474464 + MIR SINE MIR 28 151 -111 305 240 52 5 chr1 32719582 32719693 -249473971 - MIR SINE MIR -58 150 72 361 299 60 8 chr1 32719705 32719839 -249473825 - L2 LINE L2 -65 3248 3108 219 69 0 0 chr1 32719972 32720001 -249473663 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 344 223 27 62 chr1 32720307 32720419 -249473245 - MIR SINE MIR -71 137 30 * 541 317 29 10 chr1 32720365 32720573 -249473091 + MIR SINE MIR 23 234 -28 244 246 46 0 chr1 32720683 32720748 -249472916 - MIR SINE MIR -111 151 84 355 291 67 68 chr1 32720768 32721103 -249472561 - L1MCa LINE L1 -2950 3476 2087 852 171 0 0 chr1 32721104 32721233 -249472431 - FLAM_A SINE Alu -4 129 1 261 317 67 35 chr1 32721416 32721700 -249471964 - HAL1 LINE L1 -762 1745 1453 374 178 100 11 chr1 32721753 32721854 -249471810 - L1ME3A LINE L1 -137 6027 5919 291 317 50 52 chr1 32722038 32722308 -249471356 - L1MCa LINE L1 -4866 1550 1280 4383 165 11 8 chr1 32722308 32723028 -249470636 - MER72 LTR ERV1 0 722 1 291 317 50 52 chr1 32723028 32723195 -249470469 - L1MCa LINE L1 -5136 1280 1114 193 207 35 17 chr1 32723441 32723499 -249470165 + L3b LINE CR1 1102 1160 -423 614 215 6 74 chr1 32723574 32723737 -249469927 - MIR SINE MIR -10 252 101 260 324 34 68 chr1 32723777 32723925 -249469739 + MIR3 SINE MIR 34 176 -32 203 269 72 12 chr1 32724836 32724921 -249468743 + MIR SINE MIR 45 133 -93 195 262 0 0 chr1 32725265 32725307 -249468357 + MIR SINE MIR 215 256 -6 351 0 0 0 chr1 32725800 32725839 -249467825 + (TAA)n Simple_repeat Simple_repeat 2 40 0 192 77 0 0 chr1 32726535 32726561 -249467103 + (CAGGC)n Simple_repeat Simple_repeat 4 29 0 416 280 150 16 chr1 32726698 32727398 -249466266 - L2 LINE L2 -10 3303 2508 326 256 39 121 chr1 32727770 32728051 -249465613 + MLT1I LTR MaLR 91 348 -61 1154 273 70 38 chr1 32728103 32728576 -249465088 + LTR53 LTR ERVL 21 508 -11 237 312 48 0 chr1 32728624 32728749 -249464915 + L1ME4a LINE L1 5987 6117 -4 225 253 36 36 chr1 32728960 32729043 -249464621 + MIR3 SINE MIR 111 193 -15 962 248 29 25 chr1 32729055 32729297 -249464367 - MIR SINE MIR 0 262 20 198 340 131 21 chr1 32729400 32729591 -249464073 - MIR SINE MIR -18 244 33 522 279 55 16 chr1 32729601 32729784 -249463880 - MIR SINE MIR -71 191 2 1002 195 0 0 chr1 32730393 32730562 -249463102 - FRAM SINE Alu -10 166 1 199 333 0 0 chr1 32730734 32730782 -249462882 + MIR SINE MIR 44 91 -117 314 293 12 0 chr1 32731042 32731124 -249462540 + L2 LINE L2 3230 3312 -1 238 269 87 0 chr1 32731734 32731838 -249461826 + MLT1L LTR MaLR 492 604 -11 407 207 147 0 chr1 32733636 32733752 -249459912 + MIR SINE MIR 15 147 -115 328 255 104 9 chr1 32735148 32735254 -249458410 + L2 LINE L2 3144 3259 -13 397 298 122 33 chr1 32735612 32736038 -249457626 + L2 LINE L2 2809 3272 0 604 291 23 6 chr1 32736062 32736237 -249457427 - MIR SINE MIR -12 250 73 403 305 30 8 chr1 32737071 32737202 -249456462 + MIR3 SINE MIR 37 170 -38 732 222 5 6 chr1 32737723 32738789 -249454875 + (TG)n Simple_repeat Simple_repeat 1 1065 0 200 208 0 19 chr1 32739183 32739236 -249454428 + (CCCTG)n Simple_repeat Simple_repeat 4 55 0 191 176 0 29 chr1 32739391 32739425 -249454239 - MIR SINE MIR -58 150 118 541 266 76 16 chr1 32739494 32739678 -249453986 + MIR SINE MIR 46 240 -22 701 282 17 21 chr1 32740274 32740508 -249453156 + MIR SINE MIR 28 260 -2 330 266 0 0 chr1 32740567 32740655 -249453009 + L1MC1 LINE L1 5190 5278 -863 1861 167 10 0 chr1 32740655 32740943 -249452721 + AluJb SINE Alu 1 291 -21 1742 160 92 37 chr1 32740948 32741349 -249452315 + LTR44 LTR ERV1 97 519 0 6307 132 17 11 chr1 32741349 32741847 -249451817 + L1MC1 LINE L1 5279 5772 -561 2321 224 30 60 chr1 32741847 32742478 -249451186 + LTR9 LTR ERV1 1 612 0 6307 132 17 11 chr1 32742478 32743022 -249450642 + L1MC1 LINE L1 5772 6328 -5 4682 259 87 15 chr1 32743342 32744282 -249449382 + L1MC/D LINE L1 35 906 -5490 2124 124 3 16 chr1 32744282 32744589 -249449075 + AluSx SINE Alu 3 305 -7 4682 259 87 15 chr1 32744589 32745290 -249448374 + L1MC/D LINE L1 906 1794 -4602 180 0 0 0 chr1 32745322 32745342 -249448322 + (CA)n Simple_repeat Simple_repeat 1 20 0 472 291 0 6 chr1 32745370 32745552 -249448112 + L1MC/D LINE L1 4425 4605 -1610 2456 227 50 16 chr1 32745568 32747125 -249446539 + L1MC/D LINE L1 4654 5711 -600 8003 235 65 20 chr1 32747125 32749439 -249444225 + L1ME1 LINE L1 2515 4977 -1187 1598 178 6 68 chr1 32749439 32749760 -249443904 + AluJb SINE Alu 1 301 -11 8003 235 65 20 chr1 32749760 32750220 -249443444 + L1ME1 LINE L1 4977 5415 -749 1704 222 71 31 chr1 32750258 32750766 -249442898 + L1ME1 LINE L1 5488 6015 -151 646 207 40 0 chr1 32750766 32750916 -249442748 + L1MA10 LINE L1 6175 6330 -4 400 280 24 16 chr1 32751584 32751709 -249441955 - L2 LINE L2 -23 3290 3165 961 229 9 14 chr1 32751747 32751965 -249441699 + MER20 DNA MER1_type 2 218 -1 191 384 98 0 chr1 32752130 32752242 -249441422 + MIR SINE MIR 23 145 -63 361 250 204 0 chr1 32752333 32752441 -249441223 - L2 LINE L2 0 3313 3184 272 261 0 0 chr1 32753028 32753093 -249440571 + MIR SINE MIR 81 145 -63 333 255 185 19 chr1 32753239 32753396 -249440268 + MIR SINE MIR 2 184 -78 192 125 0 0 chr1 32753424 32753456 -249440208 + (CCCCCA)n Simple_repeat Simple_repeat 5 36 0 192 77 0 0 chr1 32753680 32753706 -249439958 + (GGGA)n Simple_repeat Simple_repeat 4 29 0 231 88 0 0 chr1 32753983 32754017 -249439647 + (TGAG)n Simple_repeat Simple_repeat 2 35 0 394 270 145 30 chr1 32754618 32754818 -249438846 + MIR SINE MIR 22 244 -18 281 191 22 45 chr1 32754873 32754962 -249438702 - MLT1K LTR MaLR -11 577 491 421 278 9 0 chr1 32755751 32755859 -249437805 - MIR SINE MIR 0 262 154 285 344 57 0 chr1 32756145 32756267 -249437397 - MIR3 SINE MIR -73 135 7 * 333 331 57 6 chr1 32756240 32756386 -249437278 + MIR3 SINE MIR 41 197 -11 2525 99 43 8 chr1 32756386 32756738 -249436926 - THE1B LTR MaLR 0 364 1 180 241 35 17 chr1 32756745 32756803 -249436861 - MIR SINE MIR -140 122 64 * 254 301 21 43 chr1 32757178 32757271 -249436393 - MIR SINE MIR -6 256 166 1508 198 0 15 chr1 32757438 32757711 -249435953 + AluJo SINE Alu 40 308 -4 431 252 122 16 chr1 32757747 32757870 -249435794 + MIR SINE MIR 18 153 -109 398 331 0 8 chr1 32757868 32757989 -249435675 - MIR SINE MIR -130 132 13 * 645 171 0 0 chr1 32759943 32760089 -249433575 + (TG)n Simple_repeat Simple_repeat 1 146 0 349 306 236 5 chr1 32760447 32760663 -249433001 + L3 LINE CR1 1312 1577 0 182 259 17 17 chr1 32760981 32761039 -249432625 + MIR3 SINE MIR 120 177 -31 232 327 0 35 chr1 32762325 32762438 -249431226 + L2 LINE L2 3167 3275 -38 206 162 27 0 chr1 32762450 32762487 -249431177 + GA-rich Low_complexity Low_complexity 3 40 0 361 272 178 11 chr1 32762512 32762692 -249430972 - L2 LINE L2 -94 3219 3010 352 163 71 61 chr1 32762706 32762804 -249430860 - MIR3 SINE MIR -46 162 64 205 330 36 18 chr1 32762852 32762964 -249430700 - MIR SINE MIR -46 216 103 2581 110 56 17 chr1 32763929 32764365 -249429299 - MLT2A1 LTR ERVL 0 515 32 355 221 32 0 chr1 32764481 32764639 -249429025 + (TA)n Simple_repeat Simple_repeat 2 164 0 333 261 33 22 chr1 32764658 32764750 -249428914 - L1MC4 LINE L1 -1337 6705 6613 399 211 33 3 chr1 32764761 32765075 -249428589 + (TA)n Simple_repeat Simple_repeat 1 323 0 259 138 75 11 chr1 32765089 32765183 -249428481 + (TA)n Simple_repeat Simple_repeat 1 100 0 268 243 57 64 chr1 32765237 32765377 -249428287 - MLT1J LTR MaLR -39 472 334 1973 145 24 32 chr1 32765581 32765960 -249427704 + L1PA16 LINE L1 5790 6165 -1 933 199 0 0 chr1 32766057 32766218 -249427446 + MIR SINE MIR 6 166 -96 848 279 112 32 chr1 32766491 32766993 -249426671 - L1ME4a LINE L1 -21 6100 5559 720 232 80 12 chr1 32767434 32767722 -249425942 - MLT1F LTR MaLR 0 542 193 183 100 0 0 chr1 32768525 32768555 -249425109 + (GGAGA)n Simple_repeat Simple_repeat 3 32 0 3731 155 30 23 chr1 32768685 32770845 -249422819 - L1ME2 LINE L1 -78 6086 4800 * 4130 251 94 11 chr1 32770843 32771205 -249422459 - L1ME2 LINE L1 -1918 4228 3897 1794 155 0 38 chr1 32771205 32771496 -249422168 - AluJb SINE Alu -32 280 1 4130 251 94 11 chr1 32771496 32772605 -249421059 - L1ME2 LINE L1 -2249 3897 2635 1640 173 10 36 chr1 32772876 32773177 -249420487 + AluJo SINE Alu 1 293 -19 207 200 0 0 chr1 32773354 32773394 -249420270 + (CATA)n Simple_repeat Simple_repeat 2 41 0 480 273 106 58 chr1 32774302 32774577 -249419087 + L2 LINE L2 3026 3313 0 591 321 60 15 chr1 32775249 32775517 -249418147 - L1ME4a LINE L1 -268 5853 5574 336 83 0 0 chr1 32775668 32775716 -249417948 + (TG)n Simple_repeat Simple_repeat 1 48 0 239 218 105 121 chr1 32775734 32775858 -249417806 - MIR SINE MIR -30 232 111 341 311 123 23 chr1 32775860 32776079 -249417585 + MIR SINE MIR 4 244 -18 233 298 0 0 chr1 32777839 32777908 -249415756 - MIR SINE MIR -62 146 77 430 176 108 29 chr1 32778766 32778868 -249414796 - MIR SINE MIR -61 147 38 321 310 0 0 chr1 32778888 32778975 -249414689 + (TG)n Simple_repeat Simple_repeat 2 88 0 200 276 186 30 chr1 32780078 32780342 -249413322 + L2 LINE L2 2564 2868 -446 663 241 49 30 chr1 32780469 32780672 -249412992 - MIR SINE MIR -16 246 40 214 333 74 0 chr1 32780804 32780912 -249412752 + L2 LINE L2 3150 3265 -7 329 269 121 86 chr1 32781370 32781708 -249411956 + L2 LINE L2 2829 3178 -94 241 248 16 108 chr1 32782365 32782494 -249411170 - L2 LINE L2 -57 3256 3140 255 299 198 34 chr1 32782544 32782812 -249410852 + L2 LINE L2 2578 2889 -425 231 175 35 35 chr1 32782985 32783042 -249410622 + L2 LINE L2 3139 3195 -77 879 310 8 12 chr1 32783408 32783653 -249410011 + MIR SINE MIR 19 262 0 339 250 30 60 chr1 32783783 32783804 -249409860 + MIR SINE MIR 49 69 -139 1860 171 13 3 chr1 32783804 32784103 -249409561 - AluJo SINE Alu -10 302 1 339 250 30 60 chr1 32784103 32784181 -249409483 + MIR SINE MIR 69 145 -63 248 221 59 0 chr1 32784210 32784278 -249409386 + CT-rich Low_complexity Low_complexity 1 72 0 190 297 108 0 chr1 32784585 32784696 -249408968 + L2 LINE L2 2843 2965 -307 1104 253 104 69 chr1 32784709 32785247 -249408417 - MLT1K LTR MaLR -10 578 22 885 260 51 4 chr1 32785418 32785653 -249408011 - MIR SINE MIR 0 262 17 380 311 59 17 chr1 32785729 32785848 -249407816 + L2 LINE L2 3118 3241 -31 186 198 0 49 chr1 32785953 32786034 -249407630 + CT-rich Low_complexity Low_complexity 3 79 0 778 252 70 14 chr1 32786722 32786936 -249406728 - MIR SINE MIR -29 233 8 422 212 26 35 chr1 32787411 32787524 -249406140 - L2 LINE L2 -15 3298 3187 498 271 174 0 chr1 32787601 32787819 -249405845 - MER102b DNA MER1_type -3 338 83 250 176 20 20 chr1 32788181 32788232 -249405432 + MER4-int LTR ERV1 1105 1155 -5443 820 229 49 0 chr1 32788409 32788632 -249405032 - MIR SINE MIR -14 248 15 190 274 148 59 chr1 32788694 32788829 -249404835 - MIR SINE MIR -30 232 86 589 252 129 29 chr1 32789518 32789728 -249403936 - MIR SINE MIR -13 249 19 187 245 19 19 chr1 32790162 32790215 -249403449 + MIR3 SINE MIR 144 196 -12 554 211 63 14 chr1 32790447 32790589 -249403075 + MIR SINE MIR 35 183 -79 438 222 65 0 chr1 32790992 32791100 -249402564 + MIR SINE MIR 61 175 -87 21 0 0 0 chr1 32791841 32791862 -249401802 + AT_rich Low_complexity Low_complexity 1 21 0 239 406 0 0 chr1 32792065 32792203 -249401461 + (TG)n Simple_repeat Simple_repeat 1 138 0 927 234 37 11 chr1 32792391 32792660 -249401004 - MLT2D LTR ERVL -48 366 91 566 328 43 8 chr1 32792736 32792971 -249400693 - MIR SINE MIR -18 244 2 418 267 53 0 chr1 32793306 32793437 -249400227 - MLT1I LTR MaLR -22 387 250 533 330 20 5 chr1 32794016 32794213 -249399451 + MIR SINE MIR 31 230 -32 267 177 123 62 chr1 32795483 32795613 -249398051 - MLT1K LTR MaLR -173 415 278 217 147 29 73 chr1 32797429 32797497 -249396167 + T-rich Low_complexity Low_complexity 3 67 0 334 350 0 10 chr1 32797853 32797956 -249395708 - MIR SINE MIR -86 122 21 276 330 30 0 chr1 32798231 32798331 -249395333 + MIR SINE MIR 51 153 -109 494 284 34 14 chr1 32799024 32799172 -249394492 + MIR3 SINE MIR 48 198 -10 224 302 66 0 chr1 32799397 32799503 -249394161 + MIR SINE MIR 13 125 -137 1886 166 7 0 chr1 32800184 32800479 -249393185 + AluJo SINE Alu 1 297 -15 262 385 21 21 chr1 32800481 32800624 -249393040 - MIR SINE MIR -103 159 17 190 275 87 0 chr1 32801049 32801118 -249392546 - MIR SINE MIR -77 185 111 595 262 55 14 chr1 32801146 32801291 -249392373 - MIR3 SINE MIR -37 171 21 249 339 93 8 chr1 32801371 32801489 -249392175 + MIR SINE MIR 17 144 -64 197 349 108 33 chr1 32802180 32802392 -249391272 - L2 LINE L2 -2 3270 3043 609 284 61 40 chr1 32802408 32802785 -249390879 - LTR16C LTR ERVL -10 481 97 244 312 9 28 chr1 32802897 32803006 -249390658 - L2 LINE L2 -231 3041 2935 267 104 0 0 chr1 32803187 32803235 -249390429 + (GA)n Simple_repeat Simple_repeat 1 48 0 245 111 0 0 chr1 32803741 32803777 -249389887 + MIR SINE MIR 219 254 -8 210 285 124 66 chr1 32803838 32803975 -249389689 + L2 LINE L2 3123 3267 -5 210 118 0 0 chr1 32804550 32804584 -249389080 + (TC)n Simple_repeat Simple_repeat 1 34 0 312 278 90 28 chr1 32804847 32804991 -249388673 + MIR SINE MIR 13 165 -97 279 314 17 0 chr1 32805850 32805968 -249387696 - MIR SINE MIR -59 149 30 458 235 42 54 chr1 32806605 32806771 -249386893 + MIR3 SINE MIR 23 186 -22 242 191 107 48 chr1 32807511 32807595 -249386069 + MIR SINE MIR 18 106 -102 384 234 234 7 chr1 32808021 32808166 -249385498 - MIR SINE MIR -16 246 69 239 272 76 11 chr1 32808295 32808387 -249385277 - L3 LINE CR1 -214 1363 1266 4847 235 49 47 chr1 32808462 32809633 -249384031 - L1M4 LINE L1 -1156 4990 3823 2233 117 3 19 chr1 32809633 32809949 -249383715 - AluSp SINE Alu -2 311 1 4847 235 49 47 chr1 32809949 32810089 -249383575 - L1M4 LINE L1 -2323 3823 3685 1159 173 48 122 chr1 32810089 32810483 -249383181 - MLT1A1 LTR MaLR 0 365 1 4847 235 49 47 chr1 32810483 32810640 -249383024 - L1M4 LINE L1 -2461 3685 3530 1891 149 19 23 chr1 32810640 32810948 -249382716 - AluJo SINE Alu -5 307 1 4847 235 49 47 chr1 32810948 32811207 -249382457 - L1M4 LINE L1 -2616 3530 3257 963 187 44 75 chr1 32811361 32811563 -249382101 - LTR57-int LTR ERVL -4059 1284 1092 2413 94 0 0 chr1 32811563 32811861 -249381803 - AluSg SINE Alu -12 298 1 963 187 44 75 chr1 32811861 32811952 -249381712 - LTR57-int LTR ERVL -4251 1092 1000 892 188 51 113 chr1 32811952 32812022 -249381642 - MER65-int LTR ERV1 -2678 2193 1852 326 260 14 0 chr1 32812068 32812141 -249381523 + MIR SINE MIR 29 102 -160 345 296 51 28 chr1 32812180 32812356 -249381308 + L2 LINE L2 2911 3090 -182 197 353 96 32 chr1 32812492 32812648 -249381016 + L2 LINE L2 3106 3271 -1 347 247 0 0 chr1 32812728 32812809 -249380855 - MIR SINE MIR -80 128 48 1083 231 80 46 chr1 32812840 32813230 -249380434 + MLT1C LTR MaLR 56 458 -9 225 328 0 0 chr1 32813876 32813937 -249379727 - MIR SINE MIR -115 147 87 459 297 57 19 chr1 32813955 32814164 -249379500 + MIR SINE MIR 29 245 -17 754 305 25 49 chr1 32814329 32814604 -249379060 + MERVL LTR ERVL 4903 5166 -319 2078 151 7 0 chr1 32814604 32814909 -249378755 - AluSx SINE Alu -3 309 3 754 305 25 49 chr1 32814909 32815040 -249378624 + MERVL LTR ERVL 5166 5299 -186 461 221 97 7 chr1 32815441 32815586 -249378078 + LTR41 LTR ERVL 1 158 -615 442 254 158 4 chr1 32815905 32816133 -249377531 + LTR41 LTR ERVL 533 795 0 304 289 33 16 chr1 32816205 32816326 -249377338 - L2 LINE L2 0 3272 3150 * 334 268 92 39 chr1 32816306 32816459 -249377205 + MIR SINE MIR 31 191 -71 2069 165 14 11 chr1 32816473 32816837 -249376827 - MER47A DNA MER2_type -1 365 1 245 274 179 19 chr1 32816846 32816952 -249376712 - MIR3 SINE MIR -78 130 8 269 259 17 0 chr1 32817534 32817592 -249376072 - MIR SINE MIR -85 177 119 298 284 0 11 chr1 32817610 32817705 -249375959 - L1MC4 LINE L1 -1486 6556 6463 2326 202 2 13 chr1 32817881 32818337 -249375327 + MLT2B2 LTR ERVL 1 451 -64 443 208 93 28 chr1 32819685 32819830 -249373834 - MIR SINE MIR -62 146 46 245 275 14 14 chr1 32819989 32820058 -249373606 - L2 LINE L2 -1 3312 3244 21 36 0 0 chr1 32820142 32820170 -249373494 + AT_rich Low_complexity Low_complexity 1 28 0 3814 278 70 34 chr1 32820705 32823694 -249369970 + L1MEc LINE L1 3 5231 -984 1846 107 17 3 chr1 32823798 32824096 -249369568 + L1P LINE L1 4764 5065 -1081 676 233 112 60 chr1 32824094 32824890 -249368774 - L1M4 LINE L1 -1089 5057 4140 * 6703 69 8 12 chr1 32824893 32826273 -249367391 + L1PA7 LINE L1 4773 6150 -4 261 143 0 86 chr1 32826282 32826307 -249367357 + MLT2B2 LTR ERVL 401 427 -37 336 24 0 0 chr1 32826307 32826348 -249367316 + (CA)n Simple_repeat Simple_repeat 1 41 0 261 143 0 86 chr1 32826348 32826392 -249367272 + MLT2B2 LTR ERVL 427 464 0 537 283 131 5 chr1 32827322 32827513 -249366151 + MIR SINE MIR 48 262 0 208 316 120 30 chr1 32827575 32827708 -249365956 + L2 LINE L2 2941 3085 -187 257 236 18 0 chr1 32828503 32828558 -249365106 + (TCCA)n Simple_repeat Simple_repeat 2 57 0 537 161 0 24 chr1 32828615 32828739 -249364925 + (TCCA)n Simple_repeat Simple_repeat 3 123 0 309 237 62 124 chr1 32829727 32830115 -249363549 + LTR67 LTR ERVL 101 464 -93 315 280 43 32 chr1 32830115 32830208 -249363456 + MIR SINE MIR 107 200 -62 511 315 61 99 chr1 32830884 32831329 -249362335 + L2 LINE L2 2844 3271 -1 496 258 116 11 chr1 32831341 32831531 -249362133 - MIR SINE MIR -14 248 39 196 239 268 0 chr1 32832551 32832622 -249361042 + MIR SINE MIR 46 135 -127 * 225 412 18 18 chr1 32832621 32832786 -249360878 - L2 LINE L2 -460 2854 2690 2116 113 28 0 chr1 32833304 32833595 -249360069 - AluSx SINE Alu -7 305 7 303 267 26 0 chr1 32833603 32833688 -249359976 - MIR SINE MIR -58 150 95 283 292 25 42 chr1 32833685 32833805 -249359859 - MIR3 SINE MIR -2 206 89 * 238 250 69 28 chr1 32833841 32833913 -249359751 - L2 LINE L2 -56 3257 3183 233 296 33 33 chr1 32834226 32834378 -249359286 + L1MC/D LINE L1 5679 5830 -1978 234 91 0 0 chr1 32834618 32834651 -249359013 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 274 241 52 0 chr1 32834652 32834710 -249358954 - L2 LINE L2 -7 3265 3205 219 297 109 25 chr1 32834709 32834911 -249358753 - L2 LINE L2 -366 2948 2730 * 337 269 66 75 chr1 32834999 32835211 -249358453 - L2 LINE L2 -64 3249 3040 1045 101 35 60 chr1 32835277 32835476 -249358188 - MER50 LTR ERV1 -9 725 532 575 270 51 28 chr1 32835541 32835756 -249357908 - MIR SINE MIR -31 231 12 311 26 0 0 chr1 32835775 32835813 -249357851 - MER50 LTR ERV1 -39 695 658 2643 238 84 10 chr1 32836754 32837687 -249355977 + L1ME1 LINE L1 5153 6162 -4 215 302 47 12 chr1 32837852 32837938 -249355726 + MIR3 SINE MIR 67 155 -53 367 305 30 0 chr1 32839033 32839164 -249354500 + MIR SINE MIR 8 142 -120 256 254 0 0 chr1 32839699 32839762 -249353902 + L3b LINE CR1 1322 1384 -199 989 265 24 28 chr1 32839829 32840078 -249353586 - MIR SINE MIR 0 262 15 228 302 62 0 chr1 32840103 32840199 -249353465 - L2 LINE L2 0 3272 3171 1234 158 9 22 chr1 32841037 32841259 -249352405 + MLT1D LTR MaLR 1 219 -286 779 160 0 13 chr1 32841265 32841415 -249352249 - MER65A LTR ERV1 0 445 298 306 244 13 39 chr1 32841416 32841494 -249352170 - MER31-int LTR ERV1 -977 3959 3884 2495 61 0 26 chr1 32841494 32841805 -249351859 - AluY SINE Alu -8 303 1 2196 191 108 82 chr1 32841824 32842848 -249350816 - MER31-int LTR ERV1 -1228 5103 4053 671 247 87 19 chr1 32842953 32843331 -249350333 - L1MEc LINE L1 -3028 3187 2641 1266 168 201 41 chr1 32843331 32843719 -249349945 + LTR7 LTR ERV1 1 450 0 1621 197 58 42 chr1 32843719 32844171 -249349493 + HERVH LTR ERV1 1 459 -7254 12192 138 5 14 chr1 32844229 32846287 -249347377 + HERVH LTR ERV1 791 2830 -4883 3914 186 13 33 chr1 32846287 32847429 -249346235 + HERVH LTR ERV1 3357 4719 -1935 273 29 0 0 chr1 32847429 32847463 -249346201 + (A)n Simple_repeat Simple_repeat 1 34 0 881 115 0 0 chr1 32847463 32847602 -249346062 + HERVH LTR ERV1 4414 4552 -3161 * 1605 130 0 0 chr1 32847592 32847853 -249345811 + HERVH LTR ERV1 5756 6016 -1697 * 3452 116 18 9 chr1 32847846 32848398 -249345266 + HERVH LTR ERV1 7157 7713 0 765 169 112 45 chr1 32848398 32848782 -249344882 + LTR7 LTR ERV1 1 450 0 2745 231 41 20 chr1 32848782 32848804 -249344860 - L1MEc LINE L1 -3570 2645 2625 4371 132 47 41 chr1 32848804 32849263 -249344401 + MER4E LTR ERV1 1 467 -312 2316 95 0 7 chr1 32849263 32849558 -249344106 - AluSc SINE Alu -16 293 1 4371 132 47 41 chr1 32849558 32849873 -249343791 + MER4E LTR ERV1 467 779 0 2745 231 41 20 chr1 32849873 32850129 -249343535 - L1MEc LINE L1 -3590 2625 2376 1877 180 7 0 chr1 32850129 32850435 -249343229 - AluJb SINE Alu -4 308 1 2745 231 41 20 chr1 32850435 32851144 -249342520 - L1MEc LINE L1 -3839 2376 1677 277 297 0 10 chr1 32851156 32851257 -249342407 + L1MEd LINE L1 1453 1552 -4864 2256 140 65 30 chr1 32851306 32851818 -249341846 + MLT2A2 LTR ERVL 1 554 0 455 242 132 21 chr1 32851857 32852047 -249341617 + L1MEd LINE L1 1468 1678 -4748 726 238 11 16 chr1 32852057 32852242 -249341422 - L1MEc LINE L1 -6177 219 36 367 300 36 21 chr1 32852247 32852387 -249341277 + L2 LINE L2 3154 3295 -18 2384 89 3 7 chr1 32852495 32852797 -249340867 + AluSp SINE Alu 12 312 -1 537 255 100 22 chr1 32853015 32853246 -249340418 + MLT1J LTR MaLR 24 272 -239 219 152 0 0 chr1 32854355 32854388 -249339276 + MIR SINE MIR 117 149 -113 257 215 77 15 chr1 32854784 32854849 -249338815 - MIR SINE MIR -37 225 157 2335 104 3 3 chr1 32854983 32855290 -249338374 + AluSq SINE Alu 1 307 -6 318 320 0 0 chr1 32856108 32856345 -249337319 + (CA)n Simple_repeat Simple_repeat 1 237 0 380 303 6 0 chr1 32856383 32856561 -249337103 + (CA)n Simple_repeat Simple_repeat 2 180 0 325 292 0 18 chr1 32856582 32856750 -249336914 + (CATATA)n Simple_repeat Simple_repeat 6 170 0 2310 106 0 3 chr1 32856976 32857277 -249336387 - AluSq SINE Alu -13 300 1 1972 184 59 12 chr1 32857667 32858090 -249335574 + MER65A LTR ERV1 1 443 -2 2792 256 170 26 chr1 32858322 32858548 -249335116 - L2 LINE L2 -7 3306 3114 1964 120 0 34 chr1 32858548 32858860 -249334804 + AluSx SINE Alu 1 302 0 2792 256 170 26 chr1 32858860 32860181 -249333483 - L2 LINE L2 -199 3114 1530 272 296 85 20 chr1 32860417 32860664 -249333000 - L1ME LINE L1 -335 5786 5524 200 276 52 52 chr1 32860879 32860995 -249332669 + MIR SINE MIR 10 125 -137 1100 219 66 38 chr1 32861063 32861351 -249332313 - MLT2B3 LTR ERVL -4 550 255 722 169 174 0 chr1 32861354 32861526 -249332138 + L1M4c LINE L1 625 826 -5558 2165 216 28 80 chr1 32861526 32861830 -249331834 - L1M4c LINE L1 -5776 608 351 2088 116 0 24 chr1 32861830 32862124 -249331540 - AluSq SINE Alu -26 287 1 2165 216 28 80 chr1 32862124 32862431 -249331233 - L1M4c LINE L1 -6033 351 29 229 298 0 0 chr1 32862439 32862496 -249331168 + MIR SINE MIR 85 141 -67 947 109 19 13 chr1 32862504 32862660 -249331004 + L1MA8 LINE L1 6129 6285 -6 381 272 163 53 chr1 32863031 32863351 -249330313 + MLT1K LTR MaLR 205 559 -29 460 324 28 0 chr1 32863791 32863936 -249329728 - MIR3 SINE MIR -24 184 36 359 327 54 0 chr1 32864665 32864833 -249328831 - MIR SINE MIR -7 255 79 378 260 22 50 chr1 32865745 32865871 -249327793 + MIR SINE MIR 26 153 -62 325 289 169 6 chr1 32865914 32866080 -249327584 + MIR SINE MIR 70 262 0 430 251 140 23 chr1 32866800 32866971 -249326693 - MIR SINE MIR -70 192 2 403 255 26 46 chr1 32867012 32867165 -249326499 - MIR SINE MIR -78 184 35 334 264 0 12 chr1 32868202 32868294 -249325370 + MIR SINE MIR 50 140 -68 267 289 144 10 chr1 32868361 32868465 -249325199 + L2 LINE L2 3155 3272 0 5063 111 0 21 chr1 32869082 32869851 -249323813 + LTR17 LTR ERV1 1 753 -27 497 185 11 0 chr1 32869851 32869943 -249323721 + LTR17 LTR ERV1 688 780 0 561 177 0 24 chr1 32871268 32871392 -249322272 - MER63 DNA MER1_type -33 1029 909 1047 252 0 8 chr1 32871421 32871654 -249322010 - MER63 DNA MER1_type -138 924 694 590 233 10 31 chr1 32871654 32871847 -249321817 - LTR41 LTR ERVL 0 773 585 524 253 36 53 chr1 32872078 32872290 -249321374 - LTR41 LTR ERVL -556 239 1 487 218 9 9 chr1 32872448 32872558 -249321106 - MIR SINE MIR -51 211 102 621 329 203 8 chr1 32872614 32872988 -249320676 - L3 LINE CR1 -88 1489 1043 181 315 101 34 chr1 32873029 32873178 -249320486 + MIR SINE MIR 96 254 -8 198 321 19 0 chr1 32873244 32873297 -249320367 - MIR SINE MIR -136 72 19 226 270 176 0 chr1 32874071 32874145 -249319519 + L2 LINE L2 3225 3311 -2 1865 204 226 26 chr1 32874678 32875223 -249318441 - MLT1E1 LTR MaLR 0 654 1 969 220 119 39 chr1 32875556 32875893 -249317771 - MLT1A1 LTR MaLR 0 365 2 214 213 85 0 chr1 32876629 32876676 -249316988 + MIR SINE MIR 76 126 -82 189 296 28 14 chr1 32876987 32877058 -249316606 - MIR3 SINE MIR -8 200 129 1493 298 61 49 chr1 32877060 32877131 -249316533 - L1MCc LINE L1 -4191 2931 2862 2488 137 64 15 chr1 32877131 32877539 -249316125 - MSTA LTR MaLR 0 428 1 1493 298 61 49 chr1 32877539 32878574 -249315090 - L1MCc LINE L1 -4260 2862 1811 1050 199 216 6 chr1 32878589 32878959 -249314705 - L1MCc LINE L1 -4909 1513 1073 275 254 102 8 chr1 32879455 32879573 -249314091 - L1MCc LINE L1 -6038 385 257 2000 96 12 23 chr1 32879587 32879710 -249313954 + MER4A LTR ERV1 1 124 -540 183 42 0 0 chr1 32879710 32879734 -249313930 + (CAA)n Simple_repeat Simple_repeat 2 25 0 2000 96 12 23 chr1 32879734 32880124 -249313540 + MER4A LTR ERV1 124 660 -4 257 216 9 72 chr1 32880169 32880280 -249313384 - L1MCa LINE L1 -6238 188 85 519 301 51 0 chr1 32880462 32880618 -249313046 + MIR3 SINE MIR 30 193 -15 185 196 78 0 chr1 32880927 32880978 -249312686 + MIR SINE MIR 88 142 -66 198 253 40 0 chr1 32881042 32881117 -249312547 + L2 LINE L2 3108 3185 -128 1259 276 94 24 chr1 32881159 32881870 -249311794 - L2 LINE L2 -1 3312 2543 366 274 106 28 chr1 32882605 32882784 -249310880 + MIR3 SINE MIR 1 193 -15 377 312 153 12 chr1 32882952 32883122 -249310542 - MIR SINE MIR -48 214 21 876 302 82 3 chr1 32884182 32884487 -249309177 + LTR16C LTR ERVL 1 329 -162 866 283 135 31 chr1 32884770 32885104 -249308560 + L1ME3A LINE L1 5555 5950 -220 2104 121 3 7 chr1 32885104 32885402 -249308262 + AluSx SINE Alu 1 297 -15 866 283 135 31 chr1 32885402 32885519 -249308145 + L1ME3A LINE L1 5950 6053 -117 331 290 8 8 chr1 32885707 32885831 -249307833 + (TGAA)n Simple_repeat Simple_repeat 1 124 0 218 267 13 13 chr1 32885884 32885959 -249307705 + GA-rich Low_complexity Low_complexity 2 76 0 216 270 32 16 chr1 32886614 32886677 -249306987 + MIR SINE MIR 88 151 -57 414 0 0 0 chr1 32886745 32886791 -249306873 + (CA)n Simple_repeat Simple_repeat 2 47 0 294 233 78 58 chr1 32886867 32886970 -249306694 + L2 LINE L2 3168 3272 0 337 286 98 60 chr1 32888517 32888671 -249304993 + MIR SINE MIR 20 188 -74 885 174 71 47 chr1 32888671 32888883 -249304781 - MER20 DNA MER1_type 0 219 3 337 286 98 60 chr1 32888883 32888962 -249304702 + MIR SINE MIR 188 262 0 301 262 36 9 chr1 32889204 32889340 -249304324 - MIR SINE MIR -24 238 97 396 273 201 7 chr1 32889345 32889499 -249304165 - L2 LINE L2 -13 3300 3117 402 21 0 0 chr1 32889667 32889714 -249303950 + (TTCA)n Simple_repeat Simple_repeat 2 48 0 182 209 75 15 chr1 32889724 32889791 -249303873 - L2 LINE L2 -58 3214 3144 330 241 181 0 chr1 32890027 32890143 -249303521 - MIR3 SINE MIR -71 137 1 * 465 278 33 86 chr1 32890143 32890321 -249303343 + MIR SINE MIR 77 241 -21 307 200 19 124 chr1 32890413 32890518 -249303146 - MIR SINE MIR -111 151 58 355 281 90 20 chr1 32891059 32891343 -249302321 - L1M4c LINE L1 -862 1881 1377 396 199 0 193 chr1 32891466 32891543 -249302121 - MIR SINE MIR -21 241 209 2103 116 56 0 chr1 32891543 32891827 -249301837 - AluSx SINE Alu -8 304 5 396 199 0 193 chr1 32891827 32891910 -249301754 - MIR SINE MIR -53 209 112 447 314 0 15 chr1 32891945 32892082 -249301582 + MIR3 SINE MIR 15 149 -59 1778 155 0 54 chr1 32892810 32893126 -249300538 - AluJb SINE Alu -13 299 1 245 319 92 0 chr1 32894101 32894220 -249299444 - L2 LINE L2 -10 3262 3133 335 265 183 22 chr1 32894455 32894855 -249298809 - L2 LINE L2 -340 2974 2511 876 248 16 53 chr1 32895512 32895758 -249297906 - MIR SINE MIR -6 256 20 275 349 55 7 chr1 32895914 32896060 -249297604 - MIR SINE MIR -77 185 33 357 318 47 35 chr1 32896078 32896248 -249297416 - MIR SINE MIR -78 184 13 597 296 39 5 chr1 32896373 32896579 -249297085 - MIR SINE MIR -48 214 2 398 270 184 10 chr1 32897276 32897472 -249296192 + MIR SINE MIR 13 242 -20 193 312 184 0 chr1 32897616 32897725 -249295939 - MIR SINE MIR -69 193 65 1119 268 129 24 chr1 32897802 32898354 -249295310 + MLT1L LTR MaLR 2 611 -4 182 87 0 0 chr1 32898358 32898381 -249295283 - L2 LINE L2 -27 3245 3223 573 15 0 0 chr1 32898544 32898610 -249295054 + (GGAA)n Simple_repeat Simple_repeat 2 67 0 2107 140 7 0 chr1 32899688 32899988 -249293676 + AluSx SINE Alu 1 302 -10 386 327 6 31 chr1 32900304 32900358 -249293306 + MIR SINE MIR 16 70 -192 2564 225 14 20 chr1 32900358 32900917 -249292747 + LTR38 LTR ERV1 1 556 0 386 327 6 31 chr1 32900917 32901021 -249292643 + MIR SINE MIR 70 170 -92 197 261 0 17 chr1 32901105 32901209 -249292455 + (ATG)n Simple_repeat Simple_repeat 2 105 -13 2832 124 21 2 chr1 32901209 32901629 -249292035 - MSTA LTR MaLR 0 428 1 197 261 0 17 chr1 32901629 32901643 -249292021 + (ATG)n Simple_repeat Simple_repeat 105 118 0 225 299 75 8 chr1 32901961 32902095 -249291569 + MIR SINE MIR 61 203 -59 228 286 0 0 chr1 32902379 32902435 -249291229 + (TG)n Simple_repeat Simple_repeat 1 56 0 245 254 0 18 chr1 32902918 32902973 -249290691 + polypurine Low_complexity Low_complexity 2 55 0 229 128 0 0 chr1 32902981 32903020 -249290644 - MER31A LTR ERV1 0 485 447 293 109 0 0 chr1 32903047 32903093 -249290571 - MER31A LTR ERV1 -21 464 419 207 299 23 35 chr1 32904009 32904096 -249289568 - MIR3 SINE MIR -11 197 112 271 299 23 35 chr1 32904401 32904488 -249289176 - MIR SINE MIR -164 98 13 856 231 105 10 chr1 32904513 32904807 -249288857 + MER33 DNA MER1_type 2 323 -1 350 248 139 0 chr1 32905126 32905227 -249288437 - MIR SINE MIR -105 157 43 195 269 57 99 chr1 32905784 32906067 -249287597 - L2 LINE L2 -189 3083 2813 505 333 38 30 chr1 32906154 32906224 -249287440 - MIR SINE MIR -6 256 188 2253 125 0 0 chr1 32906224 32906535 -249287129 - AluSx SINE Alu -1 311 1 505 333 38 30 chr1 32906535 32906701 -249286963 - MIR SINE MIR -74 188 18 180 0 0 0 chr1 32907200 32907220 -249286444 + (TTAGGG)n Simple_repeat Simple_repeat 3 22 0 197 362 43 11 chr1 32907389 32907483 -249286181 + L3 LINE CR1 433 529 -1048 343 270 16 63 chr1 32907578 32907704 -249285960 - MER5A DNA MER1_type -24 165 46 2024 137 56 8 chr1 32907799 32908157 -249285507 - THE1C LTR MaLR 0 375 1 217 196 71 0 chr1 32908389 32908445 -249285219 - L2 LINE L2 0 3272 3213 202 300 50 12 chr1 32908572 32908652 -249285012 + L3 LINE CR1 1181 1263 -314 803 296 119 21 chr1 32908708 32909086 -249284578 - L2 LINE L2 -5 3267 2853 522 291 33 23 chr1 32909207 32909379 -249284285 + MIR SINE MIR 7 178 -61 367 278 47 0 chr1 32910186 32910503 -249283161 + (CCTA)n Simple_repeat Simple_repeat 1 331 0 477 343 65 5 chr1 32910710 32910926 -249282738 + MIR SINE MIR 13 241 -21 447 244 148 7 chr1 32910982 32911117 -249282547 + MIR SINE MIR 37 190 -72 205 170 19 38 chr1 32911541 32911594 -249282070 + GA-rich Low_complexity Low_complexity 4 55 0 337 298 106 0 chr1 32911791 32911942 -249281722 + MIR3 SINE MIR 22 188 -20 349 275 48 121 chr1 32912424 32912886 -249280778 + L2 LINE L2 2832 3259 -13 7175 179 127 124 chr1 32913152 32914971 -249278693 - MER52A LTR ERV1 0 1755 1 333 310 108 44 chr1 32915026 32915462 -249278202 + L2 LINE L2 2809 3272 0 668 251 34 17 chr1 32915478 32915653 -249278011 - MIR SINE MIR -12 250 73 341 331 38 8 chr1 32916479 32916612 -249277052 + MIR3 SINE MIR 18 154 -54 1308 220 59 30 chr1 32916725 32917098 -249276566 + MLT1B LTR MaLR 1 384 -6 445 74 0 25 chr1 32917533 32917614 -249276050 + (TG)n Simple_repeat Simple_repeat 2 80 0 324 154 26 115 chr1 32917851 32917929 -249275735 - L2 LINE L2 -38 3275 3205 677 294 114 13 chr1 32917937 32918165 -249275499 - MIR SINE MIR -6 256 6 424 263 140 39 chr1 32918343 32918522 -249275142 - MIR SINE MIR -51 211 15 3114 210 46 4 chr1 32918851 32919689 -249273975 + L1MDb LINE L1 483 1422 -4987 260 240 0 0 chr1 32919744 32919794 -249273870 + Tigger5 DNA MER2_type 2270 2319 -4 386 215 0 13 chr1 32919795 32919874 -249273790 - Tigger5 DNA MER2_type -2245 78 1 3052 211 75 28 chr1 32919874 32920027 -249273637 + L1MDb LINE L1 1430 1574 -4832 1643 191 10 7 chr1 32920027 32920321 -249273343 + AluJo SINE Alu 7 301 -11 3052 211 75 28 chr1 32920321 32921240 -249272424 + L1MDb LINE L1 1574 2552 -3854 308 263 11 0 chr1 32921255 32921350 -249272314 + L1MDb LINE L1 2666 2761 -3645 2416 251 26 6 chr1 32921351 32922079 -249271585 + L1M4 LINE L1 4558 5300 -846 1628 229 44 29 chr1 32922096 32922412 -249271252 + L1MCa LINE L1 159 486 -6078 1616 95 36 0 chr1 32922412 32922634 -249271030 - MER30 DNA MER1_type 0 230 1 1628 229 44 29 chr1 32922634 32922797 -249270867 + L1MCa LINE L1 486 645 -5919 1532 205 28 3 chr1 32922822 32923194 -249270470 + L1MCa LINE L1 606 995 -5070 212 281 70 0 chr1 32924331 32924388 -249269276 + MIR SINE MIR 197 257 -5 496 316 32 6 chr1 32924556 32924714 -249268950 + MIR SINE MIR 20 181 -81 408 325 0 8 chr1 32924757 32924877 -249268787 - MIR SINE MIR -109 153 35 355 313 30 8 chr1 32925111 32925245 -249268419 - MIR SINE MIR -112 150 14 * 379 290 80 35 chr1 32925243 32925443 -249268221 - MIR SINE MIR -22 240 32 273 279 35 0 chr1 32926983 32927069 -249266595 - MIR SINE MIR -79 129 41 304 280 35 77 chr1 32927134 32927277 -249266387 - MIR3 SINE MIR -71 137 1 513 218 143 20 chr1 32927397 32927544 -249266120 - MIR SINE MIR -14 248 84 514 234 127 6 chr1 32927563 32927721 -249265943 + LTR41 LTR ERVL 1 177 -596 593 231 6 26 chr1 32927977 32928133 -249265531 + LTR41 LTR ERVL 608 760 -13 281 284 52 17 chr1 32928637 32928753 -249264911 + ERVL LTR ERVL 578 697 -5067 749 321 72 17 chr1 32928793 32929254 -249264410 + ERVL LTR ERVL 850 1335 -4429 412 333 88 30 chr1 32929303 32929600 -249264064 + ERVL LTR ERVL 1404 1717 -4047 763 291 75 16 chr1 32929641 32929961 -249263703 + ERVL LTR ERVL 1803 2141 -3623 287 148 0 0 chr1 32929968 32930022 -249263642 + LTR33 LTR ERVL 415 468 -53 354 265 20 10 chr1 32930029 32930127 -249263537 + L1MC3 LINE L1 194 292 -5753 2342 205 28 61 chr1 32930228 32930613 -249263051 + L1MC3 LINE L1 500 896 -5436 1911 160 3 40 chr1 32930613 32930963 -249262701 - MER44D DNA MER2_type -2 607 1 2342 205 28 61 chr1 32930963 32931577 -249262087 + L1MC3 LINE L1 896 1480 -4852 11925 182 30 26 chr1 32931577 32934148 -249259516 + L1MC3 LINE L1 5269 7849 -354 2588 121 8 13 chr1 32934148 32934528 -249259136 + MER83B LTR ERV1 1 378 0 11925 182 30 26 chr1 32934528 32934885 -249258779 + L1MC3 LINE L1 7849 8203 0 313 341 53 31 chr1 32934995 32935221 -249258443 - L1ME3 LINE L1 -222 5940 5710 1969 142 30 3 chr1 32936229 32936566 -249257098 + MER41C LTR ERV1 1 346 -208 1326 156 0 9 chr1 32936602 32936826 -249256838 + MER41C LTR ERV1 333 554 0 2805 111 36 7 chr1 32937011 32937427 -249256237 + MSTA LTR MaLR 1 428 0 247 82 5 0 chr1 32937636 32937681 -249255983 - MIR SINE MIR -60 148 102 1226 283 138 41 chr1 32937688 32938739 -249254925 + L1MC4a LINE L1 3172 4324 -1822 235 301 110 15 chr1 32939345 32939481 -249254183 - L2 LINE L2 -213 3059 2911 2010 133 46 27 chr1 32940187 32940555 -249253109 - THE1C LTR MaLR 0 375 1 374 273 61 36 chr1 32940787 32940952 -249252712 + L1MC4a LINE L1 5612 5780 -2028 201 301 0 0 chr1 32940952 32941045 -249252619 + GA-rich Low_complexity Low_complexity 1 93 0 374 57 19 0 chr1 32941047 32941100 -249252564 + (GGGGA)n Simple_repeat Simple_repeat 5 58 0 418 274 161 57 chr1 32941538 32941768 -249251896 + L1MC4a LINE L1 5702 5955 -1853 572 315 65 17 chr1 32941791 32942023 -249251641 + MIR SINE MIR 20 262 0 1606 159 70 94 chr1 32942124 32942507 -249251157 + MLT1A2 LTR MaLR 1 374 0 22 56 0 0 chr1 32942512 32942548 -249251116 + AT_rich Low_complexity Low_complexity 1 36 0 241 289 33 11 chr1 32943234 32943324 -249250340 - L2 LINE L2 -18 3254 3163 625 259 95 26 chr1 32943352 32943584 -249250080 - MIR SINE MIR -2 260 13 212 183 28 155 chr1 32943846 32943917 -249249747 + L2 LINE L2 3180 3241 -31 473 265 124 40 chr1 32943947 32944163 -249249501 + MIR SINE MIR 27 260 -2 183 253 24 84 chr1 32944273 32944356 -249249308 - L2 LINE L2 -82 3231 3154 2965 158 30 4 chr1 32944469 32944943 -249248721 + MER66B LTR ERV1 1 486 0 293 246 0 0 chr1 32944965 32945030 -249248634 + MER66B-int LTR ERV1 85 149 -6527 * 9168 244 68 67 chr1 32945028 32948845 -249244819 + MER66B-int LTR ERV1 53 3874 -2802 7981 17 0 0 chr1 32948845 32949840 -249243824 + L1PA3 LINE L1 5159 6153 -2 27 0 0 0 chr1 32949840 32949867 -249243797 + AT_rich Low_complexity Low_complexity 1 27 0 197 33 33 0 chr1 32950058 32950088 -249243576 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2700 132 20 52 chr1 32950089 32950629 -249243035 + MER66B-int LTR ERV1 3879 4401 -2275 259 209 0 45 chr1 32950629 32950696 -249242968 - MER4D LTR ERV1 -805 67 4 872 288 8 4 chr1 32950701 32950944 -249242720 - LOR1-int LTR ERV1 -1022 7098 6855 204 250 19 0 chr1 32951043 32951095 -249242569 + L2 LINE L2 3219 3271 -1 204 118 29 0 chr1 32954230 32954264 -249239400 + GA-rich Low_complexity Low_complexity 4 38 0 406 282 9 0 chr1 32955115 32955225 -249238439 + MIR3 SINE MIR 48 158 -50 526 263 103 0 chr1 32955718 32955874 -249237790 - MIR SINE MIR -10 252 81 198 292 169 26 chr1 32955881 32955910 -249237754 + L2 LINE L2 3097 3121 -151 1781 280 61 23 chr1 32955910 32956481 -249237183 + MLT1E LTR MaLR 1 593 0 198 292 169 26 chr1 32956481 32956605 -249237059 + L2 LINE L2 3121 3272 0 309 51 0 0 chr1 32956792 32956831 -249236833 + (CA)n Simple_repeat Simple_repeat 1 39 0 268 281 39 39 chr1 32957027 32957155 -249236509 + MIR SINE MIR 4 131 -77 182 148 0 0 chr1 32957215 32957242 -249236422 + L2 LINE L2 3226 3252 -20 331 278 38 30 chr1 32957785 32957918 -249235746 - MIR SINE MIR -109 153 20 359 198 26 52 chr1 32958357 32958473 -249235191 - MIR SINE MIR -77 131 19 288 258 96 34 chr1 32959093 32959277 -249234387 - MIR SINE MIR -56 152 3 281 209 26 87 chr1 32959747 32959862 -249233802 + L2 LINE L2 2905 3012 -260 408 209 55 36 chr1 32959993 32960103 -249233561 - MIR SINE MIR -118 144 33 228 284 275 28 chr1 32960547 32960758 -249232906 + L3 LINE CR1 1313 1575 -2 234 256 22 56 chr1 32962111 32962201 -249231463 + L2 LINE L2 3185 3271 -42 296 174 0 14 chr1 32962267 32962336 -249231328 + (CA)n Simple_repeat Simple_repeat 1 68 0 446 287 151 23 chr1 32962828 32963093 -249230571 - L2 LINE L2 -5 3308 3010 284 179 39 51 chr1 32963120 32963198 -249230466 - MIR SINE MIR -68 140 64 232 331 155 11 chr1 32963246 32963427 -249230237 - MIR SINE MIR -46 216 10 191 300 67 11 chr1 32963933 32964023 -249229641 + MIR SINE MIR 95 189 -73 282 167 0 37 chr1 32964160 32964214 -249229450 - L2 LINE L2 0 3272 3221 237 327 64 0 chr1 32964527 32964637 -249229027 - MER5A DNA MER1_type -26 163 47 211 297 97 16 chr1 32964870 32965055 -249228609 - MIR SINE MIR -35 227 28 365 301 45 45 chr1 32965326 32965592 -249228072 + LTR40b LTR ERVL 136 401 -61 285 243 49 57 chr1 32966060 32966258 -249227406 - MIR SINE MIR -7 201 6 226 317 219 0 chr1 32966340 32966463 -249227201 + MIR SINE MIR 107 256 -6 22 0 0 0 chr1 32966957 32966979 -249226685 + AT_rich Low_complexity Low_complexity 1 22 0 781 220 132 32 chr1 32967323 32967695 -249225969 - LTR16A1 LTR ERVL -5 452 44 272 237 113 21 chr1 32967900 32967997 -249225667 + MLT1K LTR MaLR 141 246 -342 438 282 37 60 chr1 32969292 32969508 -249224156 - MIR SINE MIR 0 262 52 683 211 78 0 chr1 32969525 32969691 -249223973 - MIR SINE MIR -6 256 78 214 319 50 34 chr1 32969900 32970019 -249223645 + MIR3 SINE MIR 8 128 -80 679 262 97 14 chr1 32970241 32970468 -249223196 - MIR SINE MIR -13 249 3 208 259 35 0 chr1 32971035 32971118 -249222546 + MIR SINE MIR 104 148 -60 512 246 78 39 chr1 32971603 32971830 -249221834 - MIR SINE MIR -19 243 3 351 335 164 17 chr1 32971904 32972372 -249221292 - L3 LINE CR1 -509 1068 532 202 281 0 55 chr1 32972380 32972508 -249221156 + (TCTCTG)n Simple_repeat Simple_repeat 3 123 0 * 286 306 0 20 chr1 32972430 32972528 -249221136 + CT-rich Low_complexity Low_complexity 1 96 0 377 305 119 11 chr1 32972749 32972926 -249220738 + MIR SINE MIR 32 227 -35 2232 135 0 0 chr1 32973273 32973577 -249220087 - AluSx SINE Alu -8 304 1 1038 279 87 45 chr1 32973596 32974300 -249219364 + L1ME LINE L1 5035 5768 -396 528 67 33 0 chr1 32974843 32974933 -249218731 + (CA)n Simple_repeat Simple_repeat 1 93 0 264 210 32 0 chr1 32975802 32975864 -249217800 + MIR SINE MIR 81 144 -64 382 268 54 9 chr1 32976021 32976133 -249217531 + MIR SINE MIR 20 136 -72 245 278 49 88 chr1 32977004 32977209 -249216455 + L3 LINE CR1 676 872 -705 204 261 0 0 chr1 32977368 32977414 -249216250 + (TAA)n Simple_repeat Simple_repeat 1 46 0 187 161 125 18 chr1 32977422 32977478 -249216186 - MER5C DNA MER1_type -190 134 73 * 404 295 211 5 chr1 32977445 32977635 -249216029 - MIR SINE MIR -14 248 20 335 363 88 0 chr1 32977656 32977838 -249215826 + L3 LINE CR1 982 1179 -398 1000 305 79 11 chr1 32977839 32978206 -249215458 - L2 LINE L2 0 3313 2922 1074 156 3 1 chr1 32978212 32978813 -249214851 + (ATG)n Simple_repeat Simple_repeat 1 782 0 667 293 86 32 chr1 32978829 32979177 -249214487 - L2 LINE L2 -400 2914 2548 525 282 199 40 chr1 32979140 32979441 -249214223 + L3 LINE CR1 1118 1466 -111 * 491 302 107 40 chr1 32979468 32979693 -249213971 + MIR SINE MIR 22 261 -1 447 163 0 0 chr1 32979694 32979774 -249213890 + (ATG)n Simple_repeat Simple_repeat 2 81 0 305 281 73 0 chr1 32979776 32979858 -249213806 - MER31A-int LTR ERV1 -4834 102 15 2676 135 74 15 chr1 32979907 32980365 -249213299 - MER31A LTR ERV1 0 485 1 486 273 119 65 chr1 32980804 32981281 -249212383 - MLT1J LTR MaLR 0 511 9 659 289 71 10 chr1 32981448 32981917 -249211747 - L1ME4a LINE L1 -23 6098 5567 1457 272 81 7 chr1 32982874 32983454 -249210210 - L1ME2 LINE L1 -78 6881 6259 1784 226 79 96 chr1 32983473 32984192 -249209472 - L1ME2 LINE L1 -743 6198 5503 2155 125 0 29 chr1 32984192 32984505 -249209159 - AluSq SINE Alu -9 304 1 1784 226 79 96 chr1 32984505 32984864 -249208800 - L1ME2 LINE L1 -1438 5503 5139 2286 101 0 10 chr1 32984864 32985162 -249208502 + AluSx SINE Alu 1 295 -17 1681 195 9 29 chr1 32985170 32985346 -249208318 - MER58B DNA MER1_type -2079 341 174 3255 128 30 0 chr1 32985346 32985838 -249207826 + MER84 LTR ERV1 1 507 0 1681 195 9 29 chr1 32985838 32986009 -249207655 - MER58B DNA MER1_type -2246 174 1 4572 69 6 71 chr1 32986037 32986687 -249206977 + SVA Other Other 779 1386 0 2338 261 67 36 chr1 32986765 32987215 -249206449 - L1ME2 LINE L1 -1868 5073 4639 7155 169 23 10 chr1 32987215 32989346 -249204318 - L1PA14 LINE L1 0 6161 4013 2338 261 67 36 chr1 32989346 32989817 -249203847 - L1ME2 LINE L1 -2302 4639 4123 1090 224 59 105 chr1 32989871 32990263 -249203401 - MLT1A2 LTR MaLR 0 374 1 1058 259 154 61 chr1 32990278 32991619 -249202045 - L1ME2 LINE L1 -3875 3247 1783 2643 169 52 14 chr1 32991637 32992192 -249201472 - L1MC3 LINE L1 -21 7764 7189 323 278 11 0 chr1 32992192 32992282 -249201382 - MLT1F1 LTR MaLR -442 125 35 817 121 46 12 chr1 32992282 32992455 -249201209 - L1MC3 LINE L1 -688 7097 6919 462 277 38 16 chr1 32992435 32992625 -249201039 - L1ME2 LINE L1 -4959 1464 1442 * 2310 113 0 3 chr1 32992625 32992925 -249200739 - AluSq SINE Alu -14 299 1 462 277 38 16 chr1 32992925 32993066 -249200598 - L1ME2 LINE L1 -4981 1442 1306 623 308 106 39 chr1 32993214 32993649 -249200015 - L1ME2 LINE L1 -5543 1388 925 927 188 80 148 chr1 32993693 32994018 -249199646 - AluJb SINE Alu -3 309 7 211 220 85 17 chr1 32994431 32994490 -249199174 + L2 LINE L2 3154 3216 -56 1126 285 61 26 chr1 32994524 32994952 -249198712 - L2 LINE L2 0 3313 2871 1332 246 139 19 chr1 32994995 32995359 -249198305 - L2 LINE L2 -1195 2119 1681 2226 129 3 0 chr1 32995359 32995662 -249198002 - AluSx SINE Alu -8 304 1 1332 246 139 19 chr1 32995662 32995780 -249197884 - L2 LINE L2 -1633 1681 1579 749 313 68 15 chr1 32995796 32996122 -249197542 + MLT1K LTR MaLR 47 389 -199 383 257 167 48 chr1 32996178 32996388 -249197276 + L2 LINE L2 3079 3313 0 485 259 184 13 chr1 32997057 32997296 -249196368 - L1ME4a LINE L1 -268 5853 5574 243 170 0 0 chr1 32997449 32997496 -249196168 + (TG)n Simple_repeat Simple_repeat 2 48 0 254 226 65 0 chr1 32997545 32997607 -249196057 - MIR SINE MIR -96 166 101 185 167 0 28 chr1 32997628 32997664 -249196000 + MIR SINE MIR 40 74 -188 238 346 23 23 chr1 32998904 32999034 -249194630 - MIR SINE MIR -16 246 117 376 260 52 0 chr1 32999527 32999623 -249194041 - MIR SINE MIR -62 146 46 307 265 68 76 chr1 33000442 33000574 -249193090 - MIR3 SINE MIR -52 156 26 195 276 186 30 chr1 33001780 33002044 -249191620 + L2 LINE L2 2564 2868 -446 711 246 41 27 chr1 33002155 33002375 -249191289 - MIR SINE MIR 0 262 40 227 321 73 0 chr1 33002508 33002617 -249191047 + L2 LINE L2 3150 3266 -6 255 362 52 0 chr1 33002905 33003021 -249190643 - L2 LINE L2 -34 3238 3117 485 278 99 0 chr1 33003080 33003242 -249190422 + MIR SINE MIR 75 252 -10 781 192 23 25 chr1 33003265 33003575 -249190089 - MLT1B LTR MaLR -17 373 2 786 254 42 65 chr1 33003575 33004055 -249189609 + L1ME3 LINE L1 5641 6109 -53 608 263 109 46 chr1 33004258 33004562 -249189102 - MLT1H LTR MaLR -226 323 1 2122 122 0 3 chr1 33004959 33005246 -249188418 + AluSc SINE Alu 1 286 -23 824 99 23 0 chr1 33005246 33005377 -249188287 + (GGGAA)n Simple_repeat Simple_repeat 1 134 0 854 211 66 18 chr1 33005572 33005800 -249187864 + MIR SINE MIR 24 262 0 233 92 92 0 chr1 33006024 33006089 -249187575 + A-rich Low_complexity Low_complexity 5 75 0 866 267 126 39 chr1 33006482 33006920 -249186744 - MLT1K LTR MaLR -12 576 101 189 279 0 0 chr1 33007032 33007075 -249186589 + L2 LINE L2 3005 3047 -266 670 242 137 48 chr1 33007127 33007354 -249186310 - MIR SINE MIR -4 258 12 189 211 0 0 chr1 33007395 33007447 -249186217 + (CA)n Simple_repeat Simple_repeat 1 52 0 246 335 11 28 chr1 33007473 33007649 -249186015 + (CATATA)n Simple_repeat Simple_repeat 6 178 0 * 473 291 0 12 chr1 33007556 33007721 -249185943 + (CA)n Simple_repeat Simple_repeat 1 163 0 447 354 0 0 chr1 33007821 33008055 -249185609 + (CA)n Simple_repeat Simple_repeat 1 234 0 375 113 0 0 chr1 33008055 33008108 -249185556 + FRAM SINE Alu 65 117 -49 216 303 0 0 chr1 33008108 33008174 -249185490 + (CA)n Simple_repeat Simple_repeat 1 66 0 212 315 46 28 chr1 33008175 33008283 -249185381 + L2 LINE L2 3158 3267 -46 785 294 4 17 chr1 33009071 33009309 -249184355 - MIR SINE MIR 0 262 28 796 239 26 26 chr1 33009425 33009659 -249184005 - MIR SINE MIR -14 248 15 1280 186 147 55 chr1 33009695 33009752 -249183912 - MLT1D LTR MaLR -3 502 452 1737 173 7 14 chr1 33009752 33010047 -249183617 + AluJo SINE Alu 1 293 -19 1947 127 62 0 chr1 33010049 33010325 -249183339 + AluSx SINE Alu 1 293 -19 1280 186 147 55 chr1 33010325 33010721 -249182943 - MLT1D LTR MaLR -53 452 4 375 284 40 25 chr1 33010728 33010887 -249182777 - MIR SINE MIR -3 259 99 503 250 45 48 chr1 33011627 33011876 -249181788 - MIR3 SINE MIR -9 253 3 483 183 42 25 chr1 33012566 33012686 -249180978 + MIR SINE MIR 25 146 -62 346 252 47 19 chr1 33013080 33013187 -249180477 + MIR SINE MIR 60 169 -93 193 290 20 40 chr1 33013235 33013335 -249180329 - L2 LINE L2 -16 3256 3159 215 265 0 0 chr1 33013426 33013475 -249180189 - MIR SINE MIR -104 104 56 395 316 136 31 chr1 33016004 33016298 -249177366 + L2 LINE L2 2989 3313 0 193 256 144 22 chr1 33016606 33016696 -249176968 + MIR SINE MIR 47 147 -115 194 188 0 0 chr1 33017405 33017453 -249176211 + MIR SINE MIR 93 140 -68 181 365 16 0 chr1 33017651 33017714 -249175950 - L2 LINE L2 -7 3306 3243 191 258 30 15 chr1 33018152 33018218 -249175446 - MIR SINE MIR -115 147 81 636 271 29 0 chr1 33018284 33018454 -249175210 - MIR SINE MIR 0 262 88 273 356 8 53 chr1 33018536 33018668 -249174996 + L2 LINE L2 3134 3259 -13 261 268 79 10 chr1 33019041 33019193 -249174471 - MIR SINE MIR -36 226 61 1182 273 79 54 chr1 33019234 33019796 -249173868 - LTR41 LTR ERVL 0 795 215 335 325 35 0 chr1 33019815 33019965 -249173699 - LTR41 LTR ERVL -439 334 215 1147 209 70 20 chr1 33020068 33020369 -249173295 - LTR41 LTR ERVL -456 317 2 6054 281 60 33 chr1 33020734 33022955 -249170709 - ERVL LTR ERVL -394 5370 3090 552 314 21 0 chr1 33022958 33023146 -249170518 - ERVL LTR ERVL -2866 2898 2707 353 323 60 38 chr1 33023339 33023655 -249170009 - L2 LINE L2 0 3313 2991 232 292 14 0 chr1 33023675 33023747 -249169917 - MER94 DNA DNA -58 76 4 225 358 12 0 chr1 33023757 33023838 -249169826 + MIR SINE MIR 181 262 0 197 336 37 9 chr1 33024516 33024623 -249169041 - MIR SINE MIR -69 193 84 322 313 45 0 chr1 33024778 33024912 -249168752 + MER5A DNA MER1_type 50 189 0 476 252 98 0 chr1 33025662 33025805 -249167859 - MIR SINE MIR 0 262 106 472 268 11 55 chr1 33027849 33028032 -249165632 - MER117 DNA MER1_type -16 181 7 400 313 119 15 chr1 33028074 33028275 -249165389 + MIR SINE MIR 34 255 -7 191 294 29 0 chr1 33028360 33028428 -249165236 + MIR SINE MIR 49 118 -90 404 346 20 7 chr1 33028892 33029045 -249164619 + L3 LINE CR1 1281 1435 -142 200 275 29 14 chr1 33029800 33029869 -249163795 + L2 LINE L2 3193 3262 -10 738 316 8 23 chr1 33030214 33030470 -249163194 - MIR SINE MIR -8 254 3 4167 234 61 34 chr1 33030757 33033639 -249160025 + L1MDa LINE L1 1044 4002 -2538 2849 264 64 26 chr1 33033619 33034681 -249158983 + L1MDa LINE L1 4376 5485 -1055 * 2211 125 0 0 chr1 33034681 33034984 -249158680 - AluSx SINE Alu -9 303 1 2849 264 64 26 chr1 33034984 33035064 -249158600 + L1MDa LINE L1 5485 5561 -979 309 301 32 0 chr1 33035346 33035439 -249158225 - L2 LINE L2 0 3313 3218 358 272 20 16 chr1 33035473 33035626 -249158038 - MLT1J2 LTR MaLR -191 218 67 344 164 14 55 chr1 33036318 33036391 -249157273 + AluJ/FRAM SINE Alu 230 299 -3 488 246 22 22 chr1 33036404 33036542 -249157122 + L1M4 LINE L1 4643 4780 -1366 1741 202 63 14 chr1 33036547 33036973 -249156691 + MLT1C LTR MaLR 21 467 0 237 252 70 26 chr1 33036977 33037092 -249156572 - MIR SINE MIR -110 152 33 277 297 89 0 chr1 33037476 33037577 -249156087 - L2 LINE L2 -6 3266 3157 270 273 87 75 chr1 33037630 33037883 -249155781 - L2 LINE L2 -347 2967 2712 287 269 0 60 chr1 33037963 33038145 -249155519 + (GGGTG)n Simple_repeat Simple_repeat 1 171 0 254 288 76 83 chr1 33038912 33039176 -249154488 + L2 LINE L2 2995 3256 -16 603 294 60 9 chr1 33039281 33039499 -249154165 + MIR SINE MIR 22 250 -12 315 307 36 36 chr1 33039513 33039653 -249154011 + MLT1K LTR MaLR 38 177 -411 833 275 83 4 chr1 33039707 33039947 -249153717 + MLT1K LTR MaLR 330 588 0 192 292 14 14 chr1 33039979 33040051 -249153613 - MIR SINE MIR -157 105 34 191 284 59 49 chr1 33040720 33040822 -249152842 + L2 LINE L2 3209 3311 -2 187 341 57 0 chr1 33040981 33041069 -249152595 - MIR3 SINE MIR -107 101 9 2355 130 28 3 chr1 33041236 33041591 -249152073 - THE1B LTR MaLR 0 364 1 495 160 0 0 chr1 33041606 33041700 -249151964 + CT-rich Low_complexity Low_complexity 1 94 0 432 0 0 0 chr1 33042559 33042607 -249151057 + (TG)n Simple_repeat Simple_repeat 2 49 0 497 209 83 28 chr1 33042667 33042833 -249150831 - MIR SINE MIR -65 143 23 543 254 23 0 chr1 33043223 33043353 -249150311 - MER94 DNA DNA -1 133 1 245 299 65 0 chr1 33045558 33045635 -249148029 - MIR SINE MIR -70 192 111 260 154 19 0 chr1 33045645 33045697 -249147967 - MIR SINE MIR -130 132 80 214 175 88 18 chr1 33045927 33045984 -249147680 - MIR SINE MIR -147 115 55 342 0 0 0 chr1 33046483 33046521 -249147143 + (CA)n Simple_repeat Simple_repeat 2 39 0 521 270 56 61 chr1 33048195 33048232 -249145432 + MIR SINE MIR 64 100 -162 2651 50 0 0 chr1 33048232 33048529 -249145135 - AluY SINE Alu -14 297 1 521 270 56 61 chr1 33048529 33048687 -249144977 + MIR SINE MIR 100 258 -4 188 279 33 0 chr1 33049697 33049758 -249143906 - MIR SINE MIR -98 110 48 307 350 14 7 chr1 33050387 33050527 -249143137 + MIR SINE MIR 2 142 -120 1328 240 105 14 chr1 33050727 33051090 -249142574 - MSTD LTR MaLR 0 396 1 405 295 9 0 chr1 33051884 33051996 -249141668 + MER81 DNA DNA 1 113 -1 341 306 30 0 chr1 33053479 33053613 -249140051 - MIR3 SINE MIR -56 152 15 196 328 25 25 chr1 33054554 33054673 -249138991 - MIR3 SINE MIR -77 131 13 209 274 39 29 chr1 33055407 33055509 -249138155 + MIR SINE MIR 31 133 -129 271 333 59 0 chr1 33055530 33055665 -249137999 + MIR SINE MIR 87 229 -33 326 287 85 0 chr1 33056068 33056197 -249137467 + MIR3 SINE MIR 55 194 -14 610 260 68 11 chr1 33056267 33056474 -249137190 - MIR SINE MIR -11 251 35 524 250 64 0 chr1 33056601 33056741 -249136923 - MIR SINE MIR -78 184 36 708 224 87 40 chr1 33057121 33057443 -249136221 + L2 LINE L2 2622 2958 -356 325 241 62 62 chr1 33058249 33058361 -249135303 - L2 LINE L2 -1 3312 3201 304 283 10 10 chr1 33058972 33059071 -249134593 + MIR SINE MIR 29 127 -81 460 265 165 29 chr1 33060125 33060295 -249133369 - MIR SINE MIR -55 207 15 295 273 80 0 chr1 33060654 33060742 -249132922 + MIR SINE MIR 49 143 -119 287 300 64 36 chr1 33061175 33061315 -249132349 - MIR3 SINE MIR -23 185 42 297 308 43 8 chr1 33061363 33061480 -249132184 - MIR SINE MIR -1 261 141 380 285 60 26 chr1 33061596 33061747 -249131917 - MIR SINE MIR -33 229 74 814 267 32 16 chr1 33061749 33061996 -249131668 - MIR SINE MIR -4 258 8 318 209 30 15 chr1 33062005 33062072 -249131592 - MIR SINE MIR -174 88 21 392 264 19 88 chr1 33062298 33062357 -249131307 + MER5A DNA MER1_type 16 78 -111 2177 95 0 14 chr1 33062357 33062664 -249131000 + AluSg SINE Alu 1 303 0 392 264 19 88 chr1 33062664 33062762 -249130902 + MER5A DNA MER1_type 78 163 -26 1943 147 57 34 chr1 33062784 33063138 -249130526 + THE1B LTR MaLR 3 364 0 330 236 228 8 chr1 33063281 33063408 -249130256 - MIR SINE MIR -75 187 33 443 279 75 12 chr1 33064023 33064083 -249129581 + MIR SINE MIR 85 140 -122 2269 91 0 3 chr1 33064083 33064379 -249129285 + AluSg SINE Alu 1 295 -15 443 279 75 12 chr1 33064379 33064479 -249129185 + MIR SINE MIR 140 255 -7 186 222 0 0 chr1 33064588 33064642 -249129022 + (TG)n Simple_repeat Simple_repeat 1 54 0 2453 155 165 47 chr1 33064685 33064936 -249128728 - MER39 LTR ERV1 -54 653 433 1839 100 78 22 chr1 33064936 33065207 -249128457 + AluSx SINE Alu 1 286 -26 186 43 0 0 chr1 33065207 33065230 -249128434 + (GA)n Simple_repeat Simple_repeat 2 24 0 2453 155 165 47 chr1 33065230 33065558 -249128106 - MER39 LTR ERV1 -273 434 4 714 267 62 4 chr1 33066535 33066802 -249126862 + L1M4 LINE L1 3576 3846 -2300 14966 175 26 17 chr1 33066813 33073215 -249120449 + L1MA4 LINE L1 14 6475 -7 204 40 0 0 chr1 33073215 33073240 -249120424 + (TG)n Simple_repeat Simple_repeat 2 26 0 1285 159 54 14 chr1 33073240 33073516 -249120148 + L1MC3 LINE L1 7491 7777 -8 25 31 0 0 chr1 33073516 33073548 -249120116 + AT_rich Low_complexity Low_complexity 1 32 0 6300 194 25 5 chr1 33073569 33075358 -249118306 + L1M4 LINE L1 3840 5666 -518 405 0 0 0 chr1 33075527 33075572 -249118092 + (TG)n Simple_repeat Simple_repeat 2 46 0 27 0 0 0 chr1 33075719 33075746 -249117918 + AT_rich Low_complexity Low_complexity 1 27 0 2668 102 3 0 chr1 33075882 33076236 -249117428 + THE1A LTR MaLR 1 355 0 11839 100 9 1 chr1 33076236 33077803 -249115861 + THE1A-int LTR MaLR 1 1580 0 1829 72 4 0 chr1 33077803 33078040 -249115624 + THE1A LTR MaLR 1 238 -117 973 42 0 0 chr1 33078041 33078160 -249115504 + L1PA2 LINE L1 3 121 -6025 38357 30 22 1 chr1 33078160 33083830 -249109834 + L1PA2 LINE L1 399 6190 0 1024 75 0 0 chr1 33083832 33083965 -249109699 + THE1A LTR MaLR 223 355 0 2139 199 38 16 chr1 33084408 33084856 -249108808 - MER70A LTR ERVL -14 458 1 398 309 18 0 chr1 33084923 33085033 -249108631 - MIR SINE MIR -90 172 61 237 217 17 17 chr1 33085528 33085588 -249108076 - MIR SINE MIR -116 92 33 357 175 12 62 chr1 33085849 33085929 -249107735 + MIR SINE MIR 68 143 -65 217 344 74 8 chr1 33086591 33086713 -249106951 - L2 LINE L2 -6 3266 3137 487 260 44 31 chr1 33086799 33087026 -249106638 - LTR16C LTR ERVL 0 491 262 30 0 0 0 chr1 33087254 33087284 -249106380 + AT_rich Low_complexity Low_complexity 1 30 0 379 277 39 67 chr1 33087861 33088059 -249105605 + MIR3 SINE MIR 6 196 -66 223 164 109 0 chr1 33088136 33088191 -249105473 + MIR3 SINE MIR 105 165 -43 322 305 113 7 chr1 33089006 33089157 -249104507 + MIR SINE MIR 22 188 -74 326 311 86 7 chr1 33089347 33089498 -249104166 - MIR3 SINE MIR -19 189 27 318 222 0 16 chr1 33089524 33089587 -249104077 + MIR SINE MIR 14 75 -187 * 510 270 63 83 chr1 33089586 33090142 -249103522 - L2 LINE L2 -1 3271 2676 623 233 50 28 chr1 33090150 33090330 -249103334 + MIR SINE MIR 73 256 -6 537 356 26 17 chr1 33090988 33091218 -249102446 + MIR SINE MIR 8 239 -23 190 318 45 23 chr1 33091604 33091692 -249101972 - L2 LINE L2 -42 3271 3182 197 276 293 0 chr1 33091773 33091896 -249101768 + L2 LINE L2 1758 1916 -1398 1442 273 202 3 chr1 33092117 33092751 -249100913 + L2 LINE L2 1862 2621 -693 350 292 79 17 chr1 33092761 33092939 -249100725 - MLT1J LTR MaLR -322 189 1 347 296 67 41 chr1 33092977 33093254 -249100410 - L2 LINE L2 -284 3029 2736 40656 57 2 1 chr1 33093254 33099387 -249094277 - L1PA5 LINE L1 0 6154 13 213 301 175 18 chr1 33099436 33099665 -249093999 - L2 LINE L2 -656 2658 2394 1636 243 141 8 chr1 33100070 33100588 -249093076 + MLT1G1 LTR MaLR 1 587 -8 270 311 66 0 chr1 33100836 33100942 -249092722 + L2 LINE L2 3160 3272 0 297 0 0 0 chr1 33101618 33101651 -249092013 + (TG)n Simple_repeat Simple_repeat 2 34 0 266 292 87 25 chr1 33102288 33102449 -249091215 + MIR SINE MIR 13 183 -79 373 319 15 15 chr1 33103375 33103510 -249090154 + MIR3 SINE MIR 20 154 -54 196 279 139 0 chr1 33103631 33103717 -249089947 + MIR SINE MIR 59 156 -106 315 104 0 0 chr1 33103799 33103847 -249089817 + (ATG)n Simple_repeat Simple_repeat 3 50 0 777 194 0 0 chr1 33103888 33104068 -249089596 + (ATG)n Simple_repeat Simple_repeat 1 180 0 667 182 6 17 chr1 33104078 33104259 -249089405 + (ATGGTG)n Simple_repeat Simple_repeat 1 179 0 343 314 0 0 chr1 33104262 33104364 -249089300 + (ATG)n Simple_repeat Simple_repeat 1 102 0 2304 89 6 6 chr1 33104364 33104708 -249088956 + AluSp SINE Alu 1 402 0 372 103 0 0 chr1 33104708 33104766 -249088898 + (ATG)n Simple_repeat Simple_repeat 1 58 0 462 254 32 12 chr1 33104822 33104957 -249088707 - MIR3 SINE MIR -22 186 48 354 295 72 7 chr1 33105298 33105437 -249088227 - MIR3 SINE MIR -53 155 8 23 54 0 0 chr1 33105580 33105617 -249088047 + AT_rich Low_complexity Low_complexity 1 37 0 906 290 63 44 chr1 33105756 33106229 -249087435 + LTR33 LTR ERVL 39 520 -1 252 286 14 0 chr1 33106346 33106416 -249087248 + MIR SINE MIR 184 254 -8 471 272 55 41 chr1 33106690 33106872 -249086792 - MIR SINE MIR -61 147 3 2565 116 5 24 chr1 33107220 33107591 -249086073 + THE1B LTR MaLR 1 364 0 399 242 6 91 chr1 33108491 33108656 -249085008 + L2 LINE L2 3163 3313 0 196 29 0 57 chr1 33109117 33109152 -249084512 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 811 121 0 0 chr1 33109153 33109269 -249084395 - AluSq/x SINE Alu -197 116 1 336 177 2 0 chr1 33109641 33109711 -249083953 + MIR SINE MIR 74 145 -63 2369 77 0 3 chr1 33110446 33110757 -249082907 + AluY SINE Alu 1 310 -1 264 246 0 29 chr1 33110775 33110844 -249082820 - MLT1K LTR MaLR -111 477 411 314 275 42 49 chr1 33111012 33111154 -249082510 - MLT1K LTR MaLR -247 341 201 201 277 106 32 chr1 33111398 33111492 -249082172 - MIR SINE MIR -108 154 54 347 256 12 0 chr1 33111995 33112081 -249081583 - MIR SINE MIR -57 151 65 191 241 277 21 chr1 33112109 33112250 -249081414 - MIR SINE MIR -34 228 52 252 346 92 20 chr1 33113240 33113393 -249080271 + ERVL LTR ERVL 513 676 -5088 1686 331 64 74 chr1 33113450 33115061 -249078603 + ERVL LTR ERVL 2322 3916 -1738 432 258 115 33 chr1 33115243 33115425 -249078239 - MIR SINE MIR -56 206 10 220 256 154 0 chr1 33115611 33115689 -249077975 - MIR SINE MIR -112 150 61 272 316 156 9 chr1 33115916 33116128 -249077536 + L2 LINE L2 2947 3189 -124 500 298 84 1 chr1 33116131 33116417 -249077247 - LTR16C LTR ERVL -2 489 154 187 204 0 41 chr1 33116714 33116763 -249076901 + MIR3 SINE MIR 133 179 -29 850 157 0 16 chr1 33117036 33117279 -249076385 + (TG)n Simple_repeat Simple_repeat 1 239 0 283 288 76 83 chr1 33118407 33118671 -249074993 + L2 LINE L2 2995 3256 -16 609 295 60 9 chr1 33118777 33118994 -249074670 + MIR SINE MIR 23 250 -12 329 329 29 29 chr1 33119008 33119148 -249074516 + MLT1K LTR MaLR 38 177 -411 854 275 83 4 chr1 33119202 33119442 -249074222 + MLT1K LTR MaLR 330 588 0 200 292 14 14 chr1 33119474 33119546 -249074118 - MIR SINE MIR -157 105 34 198 284 59 49 chr1 33120215 33120317 -249073347 + L2 LINE L2 3209 3311 -2 180 341 57 0 chr1 33120476 33120564 -249073100 - MIR3 SINE MIR -107 101 9 2386 130 28 3 chr1 33120731 33121086 -249072578 - THE1B LTR MaLR 0 364 1 495 160 0 0 chr1 33121101 33121195 -249072469 + CT-rich Low_complexity Low_complexity 1 94 0 270 0 0 0 chr1 33122054 33122084 -249071580 + (TG)n Simple_repeat Simple_repeat 2 31 0 469 210 88 27 chr1 33122146 33122309 -249071355 - MIR SINE MIR -65 143 23 581 246 23 0 chr1 33122699 33122829 -249070835 - MER94 DNA DNA -1 133 1 267 298 24 0 chr1 33124847 33124931 -249068733 - MIR SINE MIR -67 141 56 2416 156 7 30 chr1 33125385 33125790 -249067874 + MSTD LTR MaLR 1 396 0 351 158 16 0 chr1 33125791 33125859 -249067805 - MIR SINE MIR -61 147 79 278 283 97 3 chr1 33126068 33126187 -249067477 + MIR SINE MIR 35 154 -56 352 267 56 0 chr1 33126593 33126683 -249066981 - MIR SINE MIR -70 192 98 245 116 0 0 chr1 33130186 33130229 -249063435 + L2 LINE L2 3271 3313 0 331 282 18 36 chr1 33130252 33130362 -249063302 - MIR SINE MIR -75 187 80 211 243 72 0 chr1 33130589 33130669 -249062995 - MIR SINE MIR -89 119 34 252 0 0 0 chr1 33131148 33131176 -249062488 + (CA)n Simple_repeat Simple_repeat 2 29 0 508 276 56 61 chr1 33132850 33132887 -249060777 + MIR SINE MIR 64 100 -162 2514 50 0 0 chr1 33132887 33133184 -249060480 - AluY SINE Alu -14 297 1 508 276 56 61 chr1 33133184 33133342 -249060322 + MIR SINE MIR 100 258 -4 180 279 33 0 chr1 33134352 33134413 -249059251 - MIR SINE MIR -98 110 48 324 371 7 0 chr1 33135042 33135182 -249058482 + MIR SINE MIR 2 142 -120 1397 251 99 8 chr1 33135382 33135745 -249057919 - MSTD LTR MaLR 0 396 1 423 295 9 0 chr1 33136539 33136651 -249057013 + MER81 DNA DNA 1 113 -1 344 313 30 0 chr1 33138134 33138268 -249055396 - MIR3 SINE MIR -56 152 15 1719 61 0 0 chr1 33139010 33139238 -249054426 - L1P LINE L1 -1400 4746 4519 * 4496 20 0 0 chr1 33139237 33139782 -249053882 + L1P LINE L1 3952 4496 -1650 189 0 0 0 chr1 33140990 33141011 -249052653 + (TG)n Simple_repeat Simple_repeat 2 22 0 1479 194 39 0 chr1 33141012 33141291 -249052373 - AluJo SINE Alu -22 290 1 2839 91 6 0 chr1 33141536 33141897 -249051767 - THE1B LTR MaLR 0 364 2 563 298 48 0 chr1 33142293 33142481 -249051183 + MIR SINE MIR 46 242 -20 515 306 72 10 chr1 33142638 33142847 -249050817 - MIR SINE MIR -10 252 31 257 303 169 18 chr1 33143029 33143193 -249050471 + MIR SINE MIR 58 245 -17 366 299 26 0 chr1 33143502 33143619 -249050045 - MIR SINE MIR -99 163 44 908 267 46 4 chr1 33143665 33143905 -249049759 - MIR SINE MIR -10 252 3 341 283 81 0 chr1 33143983 33144082 -249049582 + L2 LINE L2 3138 3244 -28 755 297 69 15 chr1 33144241 33144574 -249049090 - MLT1I LTR MaLR -56 353 3 286 200 89 67 chr1 33144708 33144798 -249048866 - MIR SINE MIR -80 128 37 237 224 17 17 chr1 33145054 33145112 -249048552 + GA-rich Low_complexity Low_complexity 1 58 0 238 179 0 0 chr1 33145201 33145240 -249048424 - MER5A DNA MER1_type -115 74 36 1364 176 8 12 chr1 33146908 33147164 -249046500 - MER65A LTR ERV1 -190 255 1 2477 223 30 13 chr1 33147164 33147788 -249045876 - MER65A-int LTR ERV1 0 4871 4237 7011 6 1 0 chr1 33147895 33148758 -249044906 - L1HS LINE L1 -89 6066 5203 594 225 60 74 chr1 33148768 33149010 -249044654 - MER65A-int LTR ERV1 -406 4530 3605 269 206 0 37 chr1 33149095 33149180 -249044484 - MER65A-int LTR ERV1 -728 5696 5458 2199 208 66 65 chr1 33149181 33150620 -249043044 - MER65A-int LTR ERV1 -1137 4021 2466 677 163 84 58 chr1 33150700 33150890 -249042774 - MER65A-int LTR ERV1 -2868 3730 3536 1208 184 88 101 chr1 33151157 33151762 -249041902 - MER65A-int LTR ERV1 -3105 3493 1989 777 196 50 14 chr1 33151743 33151963 -249041701 - MER65A-int LTR ERV1 -6377 1743 1516 * 4011 185 103 51 chr1 33152037 33152391 -249041273 - MER65A-int LTR ERV1 -2377 2494 2160 796 143 0 0 chr1 33152391 33152503 -249041161 + FLAM_C SINE Alu 5 116 -17 381 58 0 0 chr1 33152512 33152564 -249041100 + (CA)n Simple_repeat Simple_repeat 1 52 0 4011 185 103 51 chr1 33152564 33152903 -249040761 - MER65A-int LTR ERV1 -2718 2153 1833 237 65 0 0 chr1 33152903 33152934 -249040730 + (CA)n Simple_repeat Simple_repeat 2 32 0 4011 185 103 51 chr1 33152934 33153424 -249040240 - MER65A-int LTR ERV1 -3038 1833 1238 872 177 0 121 chr1 33153424 33153639 -249040025 - MER51C LTR ERV1 0 640 452 2713 224 50 30 chr1 33153949 33154644 -249039020 - MER65A-int LTR ERV1 -3640 1231 523 692 255 46 76 chr1 33154732 33155101 -249038563 - MER65A-int LTR ERV1 -4509 362 5 2318 168 20 9 chr1 33155101 33155541 -249038123 - MER65A LTR ERV1 0 445 1 3460 255 98 54 chr1 33155612 33156744 -249036920 - L1MEc LINE L1 -3059 3156 2076 3195 165 30 7 chr1 33156744 33157282 -249036382 + MER44D DNA MER2_type 1 605 0 3460 255 98 54 chr1 33157282 33158034 -249035630 - L1MEc LINE L1 -4139 2076 1359 2261 133 0 0 chr1 33158034 33158342 -249035322 - AluSx SINE Alu -2 310 3 3460 255 98 54 chr1 33158342 33158615 -249035049 - L1MEc LINE L1 -4856 1359 1100 2288 125 0 0 chr1 33158615 33158926 -249034738 - AluSq SINE Alu -2 311 1 3460 255 98 54 chr1 33158926 33159425 -249034239 - L1MEc LINE L1 -5115 1100 625 1958 97 78 0 chr1 33159425 33159694 -249033970 - AluSg SINE Alu -20 290 1 3460 255 98 54 chr1 33159694 33160066 -249033598 - L1MEc LINE L1 -5590 625 36 515 351 40 5 chr1 33160066 33160268 -249033396 + MIR SINE MIR 20 228 -34 769 238 6 12 chr1 33161806 33161974 -249031690 + MIR SINE MIR 38 204 -58 299 320 13 59 chr1 33162111 33162154 -249031510 + MIR3 SINE MIR 36 79 -129 2337 137 121 0 chr1 33162154 33162533 -249031131 + MSTC LTR MaLR 1 425 -3 299 320 13 59 chr1 33162533 33162642 -249031022 + MIR3 SINE MIR 79 181 -27 294 243 27 40 chr1 33162822 33162896 -249030768 - L2 LINE L2 0 3272 3200 590 299 54 46 chr1 33162914 33163282 -249030382 - L2 LINE L2 0 3313 2943 2587 133 150 7 chr1 33163286 33163442 -249030222 + L1P4 LINE L1 4745 4877 -1291 2014 145 129 21 chr1 33163442 33163828 -249029836 - MSTA LTR MaLR 0 428 1 2587 133 150 7 chr1 33163828 33164431 -249029233 + L1P4 LINE L1 4877 5641 -527 7132 182 78 37 chr1 33164431 33165960 -249027704 - MER52A LTR ERV1 0 1755 66 238 239 0 0 chr1 33166264 33166310 -249027354 - MER52C LTR ERV1 -1225 53 8 3782 82 2 22 chr1 33166315 33166849 -249026815 + L1PA14 LINE L1 5639 6161 0 929 252 68 0 chr1 33166948 33167182 -249026482 + MIR SINE MIR 13 262 0 271 256 22 56 chr1 33167683 33167773 -249025891 - MIR3 SINE MIR -31 177 91 308 213 25 38 chr1 33167930 33168090 -249025574 + (TTAA)n Simple_repeat Simple_repeat 2 159 0 22 35 0 0 chr1 33168093 33168122 -249025542 + AT_rich Low_complexity Low_complexity 1 29 0 213 149 45 15 chr1 33168131 33168198 -249025466 + (TTAA)n Simple_repeat Simple_repeat 3 71 0 1377 94 0 0 chr1 33168330 33169197 -249024467 + (CCA)n Simple_repeat Simple_repeat 1 867 0 298 244 372 6 chr1 33169197 33169369 -249024295 - MIR SINE MIR -15 247 13 233 339 62 48 chr1 33169533 33169679 -249023985 + MIR SINE MIR 20 165 -68 415 285 69 31 chr1 33170096 33170313 -249023351 - MIR SINE MIR -21 241 18 485 263 29 35 chr1 33170805 33170976 -249022688 + MIR SINE MIR 41 210 -52 593 257 167 9 chr1 33171155 33171377 -249022287 + MIR SINE MIR 6 262 0 494 189 81 9 chr1 33171398 33171509 -249022155 + L2 LINE L2 3195 3313 0 243 167 0 0 chr1 33171749 33171815 -249021849 + (CA)n Simple_repeat Simple_repeat 2 67 0 421 192 0 0 chr1 33172354 33172432 -249021232 + MER20 DNA MER1_type 7 84 -135 272 200 59 0 chr1 33172492 33172662 -249021002 + (CAGG)n Simple_repeat Simple_repeat 1 180 0 459 219 67 0 chr1 33172673 33172837 -249020827 + (CAGG)n Simple_repeat Simple_repeat 1 175 0 424 209 68 0 chr1 33172872 33173020 -249020644 + (CAGG)n Simple_repeat Simple_repeat 3 160 0 432 254 18 18 chr1 33173036 33173150 -249020514 + MER20 DNA MER1_type 104 217 -2 392 292 10 0 chr1 33173158 33173254 -249020410 - MIR SINE MIR -75 133 37 224 214 60 0 chr1 33174480 33174648 -249019016 + (CAGG)n Simple_repeat Simple_repeat 3 180 0 216 381 60 0 chr1 33175264 33175348 -249018316 + MIR SINE MIR 5 93 -169 2024 109 26 40 chr1 33175348 33175696 -249017968 - MSTA LTR MaLR 0 428 86 1859 160 107 62 chr1 33175721 33176153 -249017511 + MER66B LTR ERV1 7 457 -29 406 143 65 0 chr1 33176138 33176215 -249017449 - MSTA LTR MaLR -344 82 1 * 414 241 147 0 chr1 33176669 33176785 -249016879 - MIR SINE MIR -115 147 15 1185 218 148 14 chr1 33177512 33177856 -249015808 + MSTD LTR MaLR 1 390 -6 408 291 231 20 chr1 33177933 33178132 -249015532 + MIR SINE MIR 22 262 0 181 289 84 104 chr1 33178219 33178468 -249015196 + L2 LINE L2 2818 3061 -211 562 278 145 39 chr1 33178476 33178883 -249014781 + L2 LINE L2 2850 3299 -14 275 214 26 26 chr1 33178896 33178947 -249014717 + GA-rich Low_complexity Low_complexity 4 54 -66 1552 163 0 19 chr1 33178947 33179205 -249014459 + AluJo SINE Alu 42 294 -18 2479 87 0 0 chr1 33179207 33179517 -249014147 + AluY SINE Alu 1 310 -1 275 214 26 26 chr1 33179517 33179579 -249014085 + GA-rich Low_complexity Low_complexity 54 120 0 243 189 0 19 chr1 33180290 33180343 -249013321 + (TTCA)n Simple_repeat Simple_repeat 1 52 0 540 261 148 53 chr1 33180515 33180588 -249013076 - MLT1L LTR MaLR -31 584 519 1363 221 39 49 chr1 33180588 33180978 -249012686 + MER58D DNA MER1_type 1 386 0 540 261 148 53 chr1 33180978 33181283 -249012381 - MLT1L LTR MaLR -96 519 170 1363 221 39 49 chr1 33182323 33182713 -249010951 + MER58D DNA MER1_type 1 386 0 250 293 151 29 chr1 33182823 33183028 -249010636 - MLT1L LTR MaLR -216 399 170 360 274 105 16 chr1 33183275 33183399 -249010265 - MIR SINE MIR -20 242 108 206 259 52 44 chr1 33184060 33184195 -249009469 - L2 LINE L2 -289 2983 2848 184 139 56 0 chr1 33184783 33184819 -249008845 + MER5B DNA MER1_type 16 53 -125 * 264 305 42 34 chr1 33184790 33184908 -249008756 - MER5A DNA MER1_type -24 165 47 424 289 0 0 chr1 33185273 33185363 -249008301 - L2 LINE L2 -1 3312 3223 598 262 57 57 chr1 33185385 33185633 -249008031 - REP3 LTR ERV -47 515 268 416 258 39 0 chr1 33185639 33185767 -249007897 - REP3 LTR ERV -429 133 1 217 284 225 6 chr1 33186005 33186158 -249007506 - MIR SINE MIR -72 190 5 497 274 56 17 chr1 33186992 33187171 -249006493 + MIR SINE MIR 46 231 -31 520 258 80 18 chr1 33187316 33187479 -249006185 + MIR SINE MIR 20 192 -70 291 292 68 10 chr1 33187489 33187636 -249006028 + MIR SINE MIR 33 187 -21 530 248 105 66 chr1 33188135 33188500 -249005164 - MLT1I LTR MaLR -7 402 22 216 0 0 0 chr1 33188654 33188678 -249004986 + (T)n Simple_repeat Simple_repeat 1 24 0 825 149 8 0 chr1 33188869 33188990 -249004674 + FLAM_C SINE Alu 1 122 -21 498 287 194 35 chr1 33189467 33189865 -249003799 + L2 LINE L2 2789 3247 -25 477 231 4 15 chr1 33190673 33190954 -249002710 + (CA)n Simple_repeat Simple_repeat 1 277 0 414 212 0 22 chr1 33191013 33191197 -249002467 + (CA)n Simple_repeat Simple_repeat 1 180 0 268 256 6 6 chr1 33191253 33191421 -249002243 + (CA)n Simple_repeat Simple_repeat 1 168 0 864 261 25 25 chr1 33191936 33192177 -249001487 + MIR SINE MIR 4 244 -18 591 299 117 36 chr1 33192200 33192584 -249001080 + L2 LINE L2 2875 3289 -24 207 69 0 0 chr1 33192595 33192624 -249001040 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 367 306 76 7 chr1 33193983 33194127 -248999537 - L2 LINE L2 0 3313 3160 334 292 234 0 chr1 33194319 33194456 -248999208 - MIR SINE MIR -14 248 80 2244 132 22 20 chr1 33194538 33194895 -248998769 - THE1B LTR MaLR -6 358 1 308 329 106 0 chr1 33195013 33195174 -248998490 - MIR SINE MIR -50 212 35 260 320 31 10 chr1 33196173 33196270 -248997394 - MIR SINE MIR -84 124 26 640 200 62 7 chr1 33196299 33196452 -248997212 + MIR SINE MIR 99 261 -1 437 345 24 37 chr1 33196836 33197082 -248996582 + L2 LINE L2 2851 3093 -179 546 254 23 0 chr1 33197122 33197252 -248996412 - MIR SINE MIR -70 192 60 218 313 43 0 chr1 33197444 33197559 -248996105 + L2 LINE L2 2219 2338 -976 3637 151 36 2 chr1 33197815 33198398 -248995266 + LTR26 LTR ERV1 1 603 0 948 281 79 97 chr1 33198414 33198666 -248994998 + L1MEd LINE L1 242 497 -5622 1827 119 28 7 chr1 33198666 33198951 -248994713 - AluSg SINE Alu -19 291 1 948 281 79 97 chr1 33198951 33199209 -248994455 + L1MEd LINE L1 497 758 -5361 2069 127 0 0 chr1 33199209 33199508 -248994156 + AluSx SINE Alu 6 304 -8 948 281 79 97 chr1 33199508 33199912 -248993752 + L1MEd LINE L1 758 1140 -4979 1194 238 20 20 chr1 33199981 33200284 -248993380 + L1ME3A LINE L1 1 303 -5742 1206 286 71 34 chr1 33200296 33201040 -248992624 + L1ME3A LINE L1 2049 2820 -3925 1884 223 17 11 chr1 33201048 33201523 -248992141 + L1ME3A LINE L1 3037 3514 -3050 1420 225 102 29 chr1 33201522 33202016 -248991648 + L1ME3A LINE L1 6029 6580 -2 * 467 281 26 36 chr1 33202029 33202257 -248991407 + L1MEd LINE L1 1219 1629 -861 293 228 90 78 chr1 33202716 33202879 -248990785 + MIR SINE MIR 5 183 -58 383 278 116 24 chr1 33203209 33203427 -248990237 - MIR3 SINE MIR -12 250 15 352 77 64 0 chr1 33203962 33204040 -248989624 + (CA)n Simple_repeat Simple_repeat 1 83 0 441 92 0 0 chr1 33204069 33204134 -248989530 - Alu SINE Alu -7 305 241 251 247 26 52 chr1 33204375 33204452 -248989212 - L2 LINE L2 0 3272 3198 276 276 98 41 chr1 33204551 33204674 -248988990 - MIR SINE MIR -57 151 22 230 81 27 0 chr1 33205223 33205260 -248988404 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 1708 165 0 3 chr1 33205312 33205597 -248988067 + AluJb SINE Alu 5 288 -24 425 284 21 0 chr1 33205730 33205871 -248987793 + (TTCA)n Simple_repeat Simple_repeat 4 147 0 281 290 117 33 chr1 33206017 33206231 -248987433 - L2 LINE L2 -850 2464 2233 329 303 63 42 chr1 33207036 33207226 -248986438 + MIR SINE MIR 13 207 -55 314 290 57 16 chr1 33207398 33207522 -248986142 - MIR3 SINE MIR -14 194 66 414 0 0 0 chr1 33207726 33207772 -248985892 + (CA)n Simple_repeat Simple_repeat 2 47 0 1110 277 97 28 chr1 33208389 33209100 -248984564 + L2 LINE L2 2546 3313 0 1576 158 17 20 chr1 33209161 33209458 -248984206 + AluJb SINE Alu 3 298 -14 260 280 93 17 chr1 33209463 33209581 -248984083 - L2 LINE L2 -175 3138 3012 269 356 9 17 chr1 33210049 33210164 -248983500 - MIR SINE MIR -65 143 30 220 307 100 7 chr1 33210372 33210512 -248983152 - MIR3 SINE MIR -1 207 55 2558 95 31 17 chr1 33210814 33211172 -248982492 - THE1B LTR MaLR -1 363 1 1639 129 45 102 chr1 33211172 33211575 -248982089 + L1MA7 LINE L1 5907 6286 -5 371 267 183 69 chr1 33211608 33211810 -248981854 - MIR SINE MIR -19 243 19 494 264 9 0 chr1 33212391 33212497 -248981167 + MER81 DNA DNA 1 107 -7 315 325 141 25 chr1 33212555 33212718 -248980946 + MIR SINE MIR 4 185 -77 356 254 103 113 chr1 33212855 33213040 -248980624 + MIR3 SINE MIR 16 198 -10 254 163 0 0 chr1 33213328 33213371 -248980293 - MIR SINE MIR -85 123 81 262 289 74 67 chr1 33213377 33213526 -248980138 + MIR3 SINE MIR 45 194 -14 248 289 56 67 chr1 33214280 33214460 -248979204 - MIR SINE MIR -71 191 14 296 147 191 15 chr1 33214877 33214945 -248978719 - L2 LINE L2 -1 3312 3233 293 154 0 39 chr1 33216458 33216510 -248977154 + L2 LINE L2 3223 3272 0 1584 222 118 26 chr1 33216723 33217213 -248976451 - MLT1H LTR MaLR 0 549 15 2278 147 23 35 chr1 33217558 33217954 -248975710 - LTR45B LTR ERV1 -96 393 3 462 270 0 4 chr1 33217955 33218095 -248975569 + L3 LINE CR1 1263 1462 -115 545 254 87 16 chr1 33218114 33218299 -248975365 + MIR SINE MIR 11 208 -54 384 202 221 10 chr1 33220864 33220968 -248972696 + MIR SINE MIR 22 147 -115 731 221 49 66 chr1 33221000 33221079 -248972585 + MIR SINE MIR 23 102 -160 4644 87 16 25 chr1 33221079 33221749 -248971915 - MER4A LTR ERV1 0 664 1 731 221 49 66 chr1 33221749 33221913 -248971751 + MIR SINE MIR 102 262 0 504 220 290 9 chr1 33221925 33222206 -248971458 + L2 LINE L2 2706 2907 -406 1753 153 20 103 chr1 33222206 33222419 -248971245 - MLT1A1 LTR MaLR 0 365 136 1582 171 0 11 chr1 33222419 33222706 -248970958 - AluJo SINE Alu -19 293 10 1753 153 20 103 chr1 33222706 33222806 -248970858 - MLT1A1 LTR MaLR -229 136 89 1465 111 43 0 chr1 33222806 33223013 -248970651 - AluSg/x SINE Alu -13 299 84 1753 153 20 103 chr1 33223013 33223096 -248970568 - MLT1A1 LTR MaLR -276 89 1 504 220 290 9 chr1 33223096 33223203 -248970461 + L2 LINE L2 2907 3208 -105 342 269 56 9 chr1 33223205 33223313 -248970351 - MLT1K LTR MaLR -392 196 84 187 187 55 143 chr1 33223519 33223610 -248970054 + MIR SINE MIR 99 181 -81 3019 181 40 32 chr1 33224137 33224768 -248968896 - LTR27 LTR ERV1 0 636 1 189 259 87 32 chr1 33224941 33225126 -248968538 - L2 LINE L2 -419 2895 2701 314 245 20 20 chr1 33225276 33225378 -248968286 - MER5A DNA MER1_type -84 105 4 249 284 159 0 chr1 33225402 33225490 -248968174 - L2 LINE L2 -3 3269 3168 220 343 36 29 chr1 33225722 33225862 -248967802 - MIR3 SINE MIR -67 141 1 302 308 29 0 chr1 33226616 33226720 -248966944 + MIR SINE MIR 76 182 -80 329 192 68 0 chr1 33226872 33226945 -248966719 + LTR16C LTR ERVL 405 482 -9 755 192 87 12 chr1 33227138 33227310 -248966354 - MIR SINE MIR -22 240 56 356 257 243 7 chr1 33227985 33228121 -248965543 + MIR3 SINE MIR 17 184 -24 357 292 159 0 chr1 33228338 33228533 -248965131 + L2 LINE L2 1598 1823 -1491 230 171 219 38 chr1 33228690 33228795 -248964869 - MLT1G LTR MaLR -466 124 1 213 227 45 0 chr1 33229375 33229441 -248964223 + (TA)n Simple_repeat Simple_repeat 2 70 0 207 0 0 0 chr1 33229980 33230003 -248963661 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 842 218 51 17 chr1 33230388 33230622 -248963042 - L1M4 LINE L1 -2061 4085 3844 3491 172 33 12 chr1 33230639 33231308 -248962356 - L1MB3 LINE L1 -3 6180 5498 791 147 0 28 chr1 33231332 33231509 -248962155 + (TTCC)n Simple_repeat Simple_repeat 1 172 0 11824 202 32 17 chr1 33231509 33234515 -248959149 - L1MB3 LINE L1 -683 5488 2468 554 314 142 32 chr1 33234517 33234918 -248958746 + L2 LINE L2 2869 3313 0 198 0 0 0 chr1 33234938 33234960 -248958704 + (T)n Simple_repeat Simple_repeat 1 22 0 423 316 10 0 chr1 33234960 33235085 -248958579 - MIR SINE MIR -62 146 45 553 333 39 12 chr1 33235243 33235501 -248958163 + L2 LINE L2 2831 3095 -177 215 247 175 31 chr1 33235827 33235924 -248957740 - MIR SINE MIR -109 153 43 201 281 125 0 chr1 33235978 33236074 -248957590 - MIR SINE MIR -17 245 138 233 69 0 0 chr1 33236189 33236218 -248957446 - MIR SINE MIR -119 143 115 189 162 27 0 chr1 33237169 33237206 -248956458 - MIR SINE MIR -118 144 107 605 291 75 0 chr1 33237408 33237607 -248956057 + MIR SINE MIR 49 262 0 469 307 51 104 chr1 33237608 33238081 -248955583 - L2 LINE L2 0 3272 2825 425 290 145 0 chr1 33238098 33238291 -248955373 + MIR SINE MIR 28 248 -14 366 275 17 42 chr1 33238303 33238423 -248955241 - L2 LINE L2 -1 3271 3155 1112 194 28 14 chr1 33239076 33239292 -248954372 - MIR SINE MIR -37 225 7 197 329 26 13 chr1 33239362 33239438 -248954226 - L2 LINE L2 -189 3083 3007 235 331 57 46 chr1 33239566 33239741 -248953923 - LTR67 LTR ERVL -378 179 3 1917 162 0 7 chr1 33239971 33240279 -248953385 + L1PA6 LINE L1 4 309 -6152 * 25321 74 11 1 chr1 33240278 33244429 -248949235 + L1PA6 LINE L1 2278 6467 -2 2191 118 0 3 chr1 33244446 33244742 -248948922 + AluSg SINE Alu 1 295 -15 1937 153 3 26 chr1 33244748 33245061 -248948603 + AluJo SINE Alu 2 307 -5 7921 20 2 0 chr1 33246245 33247836 -248945828 - L1PA3 LINE L1 0 6155 4563 234 0 0 0 chr1 33247948 33247974 -248945690 + (TCCCC)n Simple_repeat Simple_repeat 5 30 0 1951 115 7 4 chr1 33247974 33248244 -248945420 - AluSx SINE Alu -39 273 3 367 306 48 20 chr1 33248758 33248905 -248944759 + MIR SINE MIR 69 219 -43 402 322 16 8 chr1 33249423 33249544 -248944120 - MIR3 SINE MIR -76 132 11 203 210 16 97 chr1 33249971 33250033 -248943631 - L2 LINE L2 -92 3221 3165 684 276 32 78 chr1 33250103 33250628 -248943036 - LTR33 LTR ERVL 0 521 21 501 309 131 44 chr1 33250638 33251301 -248942363 - L2 LINE L2 -227 3086 2258 1714 176 4 0 chr1 33251375 33251642 -248942022 + AluSx SINE Alu 27 294 -18 586 139 7 0 chr1 33251651 33251764 -248941900 + L1MA8 LINE L1 5997 6114 -177 258 312 43 0 chr1 33252503 33252596 -248941068 + MIR SINE MIR 83 179 -83 534 202 0 0 chr1 33252704 33252882 -248940782 + (CAT)n Simple_repeat Simple_repeat 1 178 0 606 220 2 0 chr1 33252944 33253381 -248940283 + (CAT)n Simple_repeat Simple_repeat 1 438 0 321 270 223 7 chr1 33253443 33253591 -248940073 - MIR3 SINE MIR -3 205 26 378 277 8 31 chr1 33255142 33255272 -248938392 - L2 LINE L2 -227 3045 2919 656 291 66 22 chr1 33255401 33255462 -248938202 + MIR SINE MIR 3 60 -202 1651 218 3 0 chr1 33255462 33255755 -248937909 - AluJo SINE Alu -18 294 1 656 291 66 22 chr1 33255755 33255920 -248937744 + MIR SINE MIR 60 239 -23 306 279 112 6 chr1 33256030 33256138 -248937526 - MIR SINE MIR -76 132 28 210 284 68 0 chr1 33256933 33257021 -248936643 + L2 LINE L2 2978 3071 -201 613 257 40 7 chr1 33257038 33257190 -248936474 - L2 LINE L2 -267 3046 2890 199 162 0 27 chr1 33257283 33257320 -248936344 + L2 LINE L2 3258 3293 -20 208 279 114 14 chr1 33257326 33257466 -248936198 + L3 LINE CR1 1072 1225 -352 311 353 71 0 chr1 33257762 33257932 -248935732 + MIR SINE MIR 63 244 -18 356 314 31 16 chr1 33258624 33258815 -248934849 - LTR16C LTR ERVL 0 491 298 289 278 0 121 chr1 33259069 33259242 -248934422 + L2 LINE L2 3077 3228 -44 320 298 74 0 chr1 33259284 33259405 -248934259 - L2 LINE L2 -17 3296 3167 447 282 9 17 chr1 33259514 33259654 -248934010 - MIR SINE MIR -66 142 21 411 245 224 21 chr1 33259940 33260275 -248933389 - LTR33 LTR ERVL -112 409 7 570 325 52 9 chr1 33260409 33260640 -248933024 - MIR SINE MIR -1 261 21 604 275 79 61 chr1 33260676 33261018 -248932646 - L2 LINE L2 -86 3186 2839 2511 144 59 0 chr1 33261113 33261517 -248932147 - MSTA LTR MaLR 0 428 1 1174 203 37 12 chr1 33261653 33261899 -248931765 + MIR SINE MIR 11 262 0 687 315 60 20 chr1 33261944 33261986 -248931678 - L1ME4a LINE L1 -178 5943 5904 1448 160 115 42 chr1 33261986 33262274 -248931390 - AluJb SINE Alu -3 309 1 687 315 60 20 chr1 33262274 33262682 -248930982 - L1ME4a LINE L1 -217 5904 5475 191 294 109 0 chr1 33262866 33262958 -248930706 + MIR SINE MIR 35 136 -72 323 214 0 0 chr1 33262999 33263055 -248930609 + L2 LINE L2 3249 3304 -9 732 284 44 18 chr1 33263198 33263427 -248930237 + MIR SINE MIR 14 248 -14 183 329 41 0 chr1 33263964 33264037 -248929627 + MIR SINE MIR 157 232 -30 339 25 0 0 chr1 33264781 33264821 -248928843 + (TG)n Simple_repeat Simple_repeat 1 40 0 311 306 61 10 chr1 33265323 33265421 -248928243 - MER5B DNA MER1_type -75 103 1 378 221 118 24 chr1 33265548 33265675 -248927989 + MIR SINE MIR 46 184 -78 291 216 18 81 chr1 33266434 33266545 -248927119 + L3 LINE CR1 1397 1500 -77 923 223 216 20 chr1 33266625 33266930 -248926734 - MLT1A1 LTR MaLR 0 365 1 2772 215 83 72 chr1 33266931 33267245 -248926419 - MLT1A1-int LTR MaLR 0 1735 1426 2120 112 4 0 chr1 33267245 33267523 -248926141 + AluSg SINE Alu 20 298 -12 2772 215 83 72 chr1 33267523 33268540 -248925124 - MLT1A1-int LTR MaLR -309 1426 5 1193 187 72 96 chr1 33268544 33268918 -248924746 - MLT1A1 LTR MaLR 0 365 1 401 299 37 15 chr1 33268930 33269064 -248924600 + MIR SINE MIR 118 254 -8 458 131 24 0 chr1 33269268 33269352 -248924312 + GA-rich Low_complexity Low_complexity 1 86 0 1548 299 26 17 chr1 33269352 33269880 -248923784 + L1MEc LINE L1 111 643 -5753 1840 177 85 34 chr1 33269893 33270163 -248923501 - MLT1C LTR MaLR -4 463 161 1758 164 11 0 chr1 33270163 33270426 -248923238 - AluJb SINE Alu -46 266 1 1840 177 85 34 chr1 33270426 33270591 -248923073 - MLT1C LTR MaLR -306 161 6 1048 246 98 25 chr1 33270595 33270994 -248922670 + L1MEc LINE L1 663 1090 -5306 594 221 56 36 chr1 33270987 33271060 -248922604 + L1MEc LINE L1 1548 1618 -4778 * 2300 131 129 5 chr1 33271060 33271441 -248922223 - MSTA LTR MaLR 0 428 1 594 221 56 36 chr1 33271441 33271562 -248922102 + L1MEc LINE L1 1618 1746 -4650 4169 127 41 35 chr1 33271575 33271925 -248921739 + Tigger3b DNA MER2_type 4 350 -2678 2310 113 0 10 chr1 33271925 33272236 -248921428 + AluSc SINE Alu 1 308 -1 4169 127 41 35 chr1 33272236 33272635 -248921029 + Tigger3b DNA MER2_type 350 758 -473 42602 42 1 3 chr1 33272960 33279127 -248914537 - L1PA4 LINE L1 -3 6152 1 2593 143 48 2 chr1 33279130 33279591 -248914073 + Tigger3b DNA MER2_type 750 1231 0 197 246 58 0 chr1 33279996 33280065 -248913599 - MER5B DNA MER1_type -91 87 15 192 242 0 0 chr1 33280239 33280272 -248913392 - L2 LINE L2 -15 3257 3225 338 61 20 0 chr1 33280319 33280368 -248913296 + (TC)n Simple_repeat Simple_repeat 2 51 0 3140 112 26 68 chr1 33280850 33281394 -248912270 + MER1A DNA MER1_type 1 521 -8 243 0 0 0 chr1 33281443 33281470 -248912194 + (TG)n Simple_repeat Simple_repeat 2 28 0 267 321 9 9 chr1 33281509 33281615 -248912049 - MIR SINE MIR -119 143 38 565 312 142 25 chr1 33282108 33282651 -248911013 + L2 LINE L2 2709 3312 -1 793 188 0 15 chr1 33283353 33283622 -248910042 + (CACCAT)n Simple_repeat Simple_repeat 1 265 0 422 257 0 6 chr1 33283642 33283813 -248909851 + (CAT)n Simple_repeat Simple_repeat 1 170 0 679 208 0 16 chr1 33283843 33284026 -248909638 + (CAT)n Simple_repeat Simple_repeat 1 180 0 576 251 10 8 chr1 33284028 33284422 -248909242 + (CACCAT)n Simple_repeat Simple_repeat 1 395 0 2023 165 19 21 chr1 33284508 33284884 -248908780 + THE1C LTR MaLR 1 375 0 1880 158 43 51 chr1 33285437 33285664 -248908000 - MLT1B LTR MaLR 0 390 166 2287 108 7 0 chr1 33285664 33285960 -248907704 - AluSx SINE Alu -14 298 1 1880 158 43 51 chr1 33285960 33286124 -248907540 - MLT1B LTR MaLR -224 166 2 336 248 0 0 chr1 33286125 33286242 -248907422 + (CAT)n Simple_repeat Simple_repeat 2 118 0 781 219 104 0 chr1 33286250 33286433 -248907231 - MIR SINE MIR -5 257 56 195 367 22 0 chr1 33286465 33286555 -248907109 - L3b LINE CR1 -188 1395 1304 304 243 71 45 chr1 33286763 33286903 -248906761 - MIR SINE MIR -69 139 3 399 299 0 54 chr1 33287365 33287512 -248906152 - MIR SINE MIR -79 183 45 275 274 14 0 chr1 33288015 33288088 -248905576 + L2 LINE L2 3240 3313 0 323 274 126 11 chr1 33288699 33288794 -248904870 - L2 LINE L2 -12 3301 3196 452 277 0 0 chr1 33288901 33289002 -248904662 + MIR SINE MIR 45 145 -63 260 315 46 66 chr1 33289939 33289988 -248903676 - L2 LINE L2 -6 3266 3218 2538 178 63 0 chr1 33289988 33290431 -248903233 - MER70A LTR ERVL 0 472 2 260 315 46 66 chr1 33290431 33290546 -248903118 - L2 LINE L2 -54 3218 3104 4170 102 3 50 chr1 33290546 33291182 -248902482 - LTR14B LTR ERVK 0 608 3 260 315 46 66 chr1 33291182 33291213 -248902451 - L2 LINE L2 -168 3104 3074 1559 178 89 56 chr1 33291329 33291684 -248901980 + MLT2D LTR ERVL 1 372 -42 393 58 0 0 chr1 33291684 33291736 -248901928 + (CA)n Simple_repeat Simple_repeat 1 52 0 1559 178 89 56 chr1 33291736 33291774 -248901890 + MLT2D LTR ERVL 372 407 -7 426 108 0 0 chr1 33291779 33291844 -248901820 + (CAT)n Simple_repeat Simple_repeat 1 65 0 367 226 81 53 chr1 33291864 33292089 -248901575 - MIR SINE MIR -17 245 17 2575 98 13 3 chr1 33293379 33293758 -248899906 - L1PA10 LINE L1 -101 6067 5685 494 310 5 25 chr1 33293761 33293958 -248899706 - L1MEc LINE L1 -4537 1859 1667 199 324 48 19 chr1 33294468 33294573 -248899091 + MIR SINE MIR 34 141 -67 2223 145 39 74 chr1 33295019 33295071 -248898593 + MER65A LTR ERV1 1 53 -392 201 39 0 0 chr1 33295071 33295097 -248898567 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2223 145 39 74 chr1 33295097 33295505 -248898159 + MER65A LTR ERV1 53 445 0 217 170 64 0 chr1 33295734 33295781 -248897883 + A-rich Low_complexity Low_complexity 2 51 0 526 237 100 60 chr1 33295944 33296193 -248897471 - LTR41 LTR ERVL -9 764 506 557 218 12 67 chr1 33296420 33296585 -248897079 - LTR41 LTR ERVL -612 161 6 1726 320 23 18 chr1 33296886 33297540 -248896124 - ERVL LTR ERVL -330 5434 4778 708 251 0 1 chr1 33297540 33297700 -248895964 - ERVL LTR ERVL -1223 4303 4105 270 242 0 0 chr1 33297701 33297763 -248895901 + MLT1H LTR MaLR 488 549 0 272 250 66 0 chr1 33297821 33297897 -248895767 + MIR SINE MIR 5 85 -177 556 297 118 9 chr1 33297951 33298180 -248895484 - MER115 DNA AcHobo -438 255 2 658 247 12 12 chr1 33298240 33298410 -248895254 + MIR SINE MIR 91 260 -2 2153 111 51 20 chr1 33299000 33299353 -248894311 + THE1B LTR MaLR 1 364 0 297 267 133 9 chr1 33299430 33299535 -248894129 - MIR SINE MIR -61 201 84 231 214 0 0 chr1 33300057 33300127 -248893537 + (CCA)n Simple_repeat Simple_repeat 3 72 0 386 242 102 8 chr1 33300492 33300620 -248893044 - MER115 DNA AcHobo -440 253 114 188 298 35 0 chr1 33301364 33301421 -248892243 - L2 LINE L2 -20 3293 3235 337 311 61 28 chr1 33301472 33301684 -248891980 - L2 LINE L2 -172 3100 2882 190 245 142 9 chr1 33301670 33301776 -248891888 - MIR SINE MIR -133 129 10 * 339 183 42 0 chr1 33301911 33301982 -248891682 - MER5A DNA MER1_type -80 109 36 205 189 0 0 chr1 33302929 33302966 -248890698 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 316 313 36 18 chr1 33303021 33303133 -248890531 + L2 LINE L2 3127 3240 -32 362 231 0 0 chr1 33303230 33303308 -248890356 + MIR SINE MIR 47 124 -138 1289 242 109 5 chr1 33303332 33303717 -248889947 + MLT1H LTR MaLR 1 425 -124 2707 131 14 0 chr1 33303766 33304194 -248889470 - MER57B LTR ERV1 0 434 1 249 228 0 0 chr1 33304464 33304521 -248889143 + MIR SINE MIR 68 124 -84 520 312 77 38 chr1 33305181 33305703 -248887961 + L2 LINE L2 2728 3272 0 366 269 37 15 chr1 33306779 33306913 -248886751 + MIR SINE MIR 8 144 -64 205 202 239 37 chr1 33307189 33307298 -248886366 + MIR SINE MIR 16 146 -62 209 211 58 0 chr1 33307749 33307801 -248885863 - L2 LINE L2 -1 3271 3217 390 289 8 16 chr1 33307828 33307956 -248885708 - MLT1K LTR MaLR -8 580 454 335 238 25 0 chr1 33307971 33308051 -248885613 - L2 LINE L2 -38 3275 3194 944 291 93 8 chr1 33308092 33308477 -248885187 - MLT1K LTR MaLR -163 425 8 3780 256 21 25 chr1 33308503 33309764 -248883900 + L1ME1 LINE L1 3121 4377 -1769 306 236 22 22 chr1 33309796 33309885 -248883779 - L1M4 LINE L1 -1214 4932 4844 810 213 9 5 chr1 33309921 33310132 -248883532 + L1ME1 LINE L1 4385 4596 -1550 601 223 40 76 chr1 33310323 33310547 -248883117 - LTR52 LTR ERVL -202 219 4 2089 102 53 11 chr1 33310584 33310868 -248882796 - AluSx SINE Alu -11 301 6 359 303 16 25 chr1 33310894 33311016 -248882648 - L1MC4 LINE L1 -1323 6719 6599 266 104 91 0 chr1 33311019 33311096 -248882568 + (TA)n Simple_repeat Simple_repeat 1 84 0 2965 219 65 31 chr1 33311098 33311200 -248882464 + L1ME1 LINE L1 4613 4710 -1624 1863 177 0 22 chr1 33311200 33311516 -248882148 + AluJo SINE Alu 4 312 0 2965 219 65 31 chr1 33311516 33312941 -248880723 + L1ME1 LINE L1 4710 6334 0 184 289 58 29 chr1 33313120 33313224 -248880440 + L2 LINE L2 3127 3233 -39 219 261 102 0 chr1 33313804 33313892 -248879772 + MIR SINE MIR 43 139 -69 358 203 236 123 chr1 33314259 33314471 -248879193 - MIR SINE MIR -19 243 8 272 158 232 12 chr1 33315469 33315551 -248878113 + MIR SINE MIR 32 131 -77 693 230 0 0 chr1 33315655 33315833 -248877831 + CT-rich Low_complexity Low_complexity 3 180 0 366 156 0 0 chr1 33316394 33316458 -248877206 + CT-rich Low_complexity Low_complexity 4 67 0 289 203 0 78 chr1 33316840 33316968 -248876696 + (GGGTG)n Simple_repeat Simple_repeat 3 120 0 605 173 0 0 chr1 33317625 33317729 -248875935 - MIR SINE MIR -87 175 72 411 273 19 32 chr1 33317772 33317926 -248875738 - MIR3 SINE MIR -28 180 29 429 110 0 0 chr1 33318777 33318850 -248874814 + (CA)n Simple_repeat Simple_repeat 2 74 0 1224 101 0 0 chr1 33319657 33319835 -248873829 + (TGG)n Simple_repeat Simple_repeat 2 179 0 270 207 218 0 chr1 33319904 33319991 -248873673 - MER91C DNA MER1_type -34 106 1 368 196 47 65 chr1 33320044 33320151 -248873513 + L2 LINE L2 3137 3241 -31 211 170 21 0 chr1 33320819 33320866 -248872798 - L2 LINE L2 -30 3242 3195 604 223 89 40 chr1 33320962 33321164 -248872500 - MIR SINE MIR -23 239 28 437 318 23 0 chr1 33321633 33321806 -248871858 + MLT1I LTR MaLR 2 178 -231 580 301 44 49 chr1 33322278 33322667 -248870997 - L2 LINE L2 0 3272 2886 263 226 0 32 chr1 33322811 33322873 -248870791 + L2 LINE L2 3207 3266 -6 1419 255 13 19 chr1 33323589 33323962 -248869702 - MLT1A2 LTR MaLR 0 374 4 532 309 106 0 chr1 33324473 33324690 -248868974 + MIR SINE MIR 23 262 0 807 241 15 19 chr1 33324832 33325049 -248868615 + MIR SINE MIR 5 213 -49 351 284 1 43 chr1 33325103 33325243 -248868421 - MIR SINE MIR -46 162 27 294 306 31 0 chr1 33325475 33325573 -248868091 - MIR SINE MIR -114 148 48 411 272 51 32 chr1 33325639 33325797 -248867867 - MIR SINE MIR -70 192 32 247 278 0 0 chr1 33327139 33327193 -248866471 + (TGAA)n Simple_repeat Simple_repeat 1 54 0 276 289 133 0 chr1 33327332 33327422 -248866242 - MIR SINE MIR -70 192 91 552 217 7 22 chr1 33328293 33328431 -248865233 - MIR SINE MIR -115 147 12 433 293 0 8 chr1 33328863 33328996 -248864668 - MIR3 SINE MIR -36 172 41 484 230 97 9 chr1 33329133 33329246 -248864418 - L2 LINE L2 0 3313 3191 445 237 133 0 chr1 33329681 33329816 -248863848 + MIR3 SINE MIR 46 198 -10 254 226 183 11 chr1 33330054 33330147 -248863517 + MIR SINE MIR 37 145 -63 194 184 0 0 chr1 33330214 33330252 -248863412 + MIR SINE MIR 82 119 -89 673 305 74 30 chr1 33330719 33331122 -248862542 + L1MC4 LINE L1 5517 5937 -1871 394 287 177 55 chr1 33331347 33331657 -248862007 - L1ME4a LINE L1 -96 6025 5678 223 321 0 0 chr1 33332075 33332131 -248861533 - MIR SINE MIR -199 63 8 2074 125 3 23 chr1 33332347 33332650 -248861014 + AluSx SINE Alu 8 304 -8 885 273 55 18 chr1 33333059 33333545 -248860119 + L2 LINE L2 2585 3087 -226 2188 128 3 0 chr1 33333644 33333941 -248859723 + AluSq SINE Alu 1 298 -15 245 186 119 0 chr1 33334114 33334173 -248859491 - LTR31 LTR ERV1 -266 353 288 1667 174 61 14 chr1 33335224 33335569 -248858095 + MLT2D LTR ERVL 4 364 -50 2283 68 45 3 chr1 33335571 33335863 -248857801 + AluY SINE Alu 1 304 -7 396 0 0 0 chr1 33335882 33335926 -248857738 + (CA)n Simple_repeat Simple_repeat 2 45 0 304 209 9 114 chr1 33335926 33336031 -248857633 + L1MC4 LINE L1 6606 6699 -1343 268 167 56 0 chr1 33336034 33336088 -248857576 + MLT2D LTR ERVL 464 520 0 234 296 6 69 chr1 33336584 33336743 -248856921 + L2 LINE L2 2884 3032 -240 886 306 157 26 chr1 33336743 33337263 -248856401 + L1MEd LINE L1 2 452 -5677 2072 122 32 0 chr1 33337263 33337542 -248856122 + AluSc SINE Alu 1 288 -21 886 306 157 26 chr1 33337542 33338400 -248855264 + L1MEd LINE L1 452 1564 -4565 995 263 112 110 chr1 33338844 33339208 -248854456 + L1MEd LINE L1 2720 3082 -3047 1938 155 0 10 chr1 33339208 33339498 -248854166 + AluJo SINE Alu 3 289 -23 995 263 112 110 chr1 33339498 33340827 -248852837 + L1MEd LINE L1 3082 4417 -1712 869 112 8 24 chr1 33341120 33341245 -248852419 + FLAM_C SINE Alu 1 123 -20 249 203 71 6 chr1 33341277 33341367 -248852297 - MIR SINE MIR -76 132 32 434 311 94 30 chr1 33341444 33341950 -248851714 - L2 LINE L2 -47 3225 2694 374 217 182 14 chr1 33342346 33342489 -248851175 - MLT1K LTR MaLR -281 307 141 186 309 83 69 chr1 33342655 33342859 -248850805 + L2 LINE L2 2993 3199 -73 8134 170 107 21 chr1 33343283 33344898 -248848766 + MER52A LTR ERV1 1 1754 -1 450 273 20 107 chr1 33344933 33345158 -248848506 + L1MC4a LINE L1 5610 5645 -476 2244 131 0 3 chr1 33345158 33345471 -248848193 + AluSq SINE Alu 1 312 -1 450 273 20 107 chr1 33345471 33345637 -248848027 + L1MC4a LINE L1 5645 5824 -297 338 281 128 32 chr1 33345796 33346077 -248847587 + L1ME4a LINE L1 5658 5971 -150 394 303 59 7 chr1 33346142 33346294 -248847370 + MIR SINE MIR 48 207 -55 406 222 22 0 chr1 33347126 33347216 -248846448 - L2 LINE L2 -17 3296 3205 1409 136 4 4 chr1 33347403 33347666 -248845998 - AluJo SINE Alu 0 346 84 238 284 68 34 chr1 33347867 33347955 -248845709 - L2 LINE L2 -8 3305 3215 360 0 0 0 chr1 33348298 33348338 -248845326 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 206 30 91 0 chr1 33348338 33348371 -248845293 + T-rich Low_complexity Low_complexity 2 37 0 264 273 0 0 chr1 33348656 33348722 -248844942 + MIR SINE MIR 81 146 -62 632 322 77 0 chr1 33348863 33349096 -248844568 + MIR SINE MIR 2 252 -10 2143 263 69 24 chr1 33351086 33351840 -248841824 + L2 LINE L2 2057 2844 -470 267 79 0 0 chr1 33351936 33351974 -248841690 + (GA)n Simple_repeat Simple_repeat 1 38 0 1500 122 54 0 chr1 33352790 33353011 -248840653 - AluSx SINE Alu -23 289 57 188 196 0 20 chr1 33354078 33354129 -248839535 + CT-rich Low_complexity Low_complexity 2 51 0 207 0 0 0 chr1 33354834 33354857 -248838807 + (T)n Simple_repeat Simple_repeat 1 23 0 225 378 94 0 chr1 33355112 33355292 -248838372 - MIR SINE MIR -15 247 51 341 367 30 12 chr1 33355492 33355661 -248838003 + MIR SINE MIR 20 191 -71 593 125 0 0 chr1 33355685 33355773 -248837891 + FRAM SINE Alu 43 130 -46 193 214 0 0 chr1 33355922 33355964 -248837700 + MIR SINE MIR 49 90 -172 215 288 99 0 chr1 33356418 33356529 -248837135 - MIR SINE MIR -77 185 64 571 171 13 38 chr1 33356745 33356987 -248836677 + GA-rich Low_complexity Low_complexity 1 235 0 408 315 155 10 chr1 33357484 33357684 -248835980 + MIR SINE MIR 20 248 -14 286 248 37 32 chr1 33358296 33358438 -248835226 - MIR3 SINE MIR -94 114 6 276 292 0 18 chr1 33359326 33359439 -248834225 + (TGAA)n Simple_repeat Simple_repeat 1 111 0 488 244 42 8 chr1 33359503 33359648 -248834016 - MIR SINE MIR -48 160 11 454 307 122 67 chr1 33360117 33360371 -248833293 + L3 LINE CR1 1309 1576 -1 228 211 0 0 chr1 33360792 33360830 -248832834 + polypurine Low_complexity Low_complexity 1 38 0 194 283 19 0 chr1 33362098 33362151 -248831513 + L2 LINE L2 3214 3267 -46 228 211 0 0 chr1 33363156 33363194 -248830470 + polypurine Low_complexity Low_complexity 1 38 0 591 289 38 34 chr1 33363201 33363435 -248830229 - MIR SINE MIR -18 244 10 336 255 174 8 chr1 33363512 33363671 -248829993 + MIR SINE MIR 17 192 -56 1080 122 2 9 chr1 33363810 33364206 -248829458 + (TCCA)n Simple_repeat Simple_repeat 2 568 0 240 167 0 0 chr1 33364218 33364266 -248829398 + (TCCA)n Simple_repeat Simple_repeat 2 49 0 347 334 102 34 chr1 33364470 33364926 -248828738 - L2 LINE L2 -179 3093 2616 677 333 171 26 chr1 33365204 33366497 -248827167 + L2 LINE L2 1291 2770 -544 285 335 149 29 chr1 33366674 33366916 -248826748 + L2 LINE L2 2978 3248 -24 1148 82 46 0 chr1 33366927 33367268 -248826396 + (TGGA)n Simple_repeat Simple_repeat 1 356 0 450 302 73 0 chr1 33367936 33368128 -248825536 - MIR SINE MIR -24 238 33 261 57 0 0 chr1 33368520 33368555 -248825109 + (CAGCC)n Simple_repeat Simple_repeat 4 38 0 383 300 80 34 chr1 33368718 33368981 -248824683 + L2 LINE L2 2004 2278 -1036 328 335 65 0 chr1 33369694 33369751 -248823913 + MIR SINE MIR 95 147 -115 3075 139 20 16 chr1 33369751 33370246 -248823418 + LOR1a LTR ERV1 1 497 0 328 335 65 0 chr1 33370246 33370343 -248823321 + MIR SINE MIR 147 259 -3 824 104 0 0 chr1 33370418 33370533 -248823131 - AluSg/x SINE Alu -12 300 186 332 323 77 10 chr1 33371659 33371854 -248821810 - MIR SINE MIR -33 229 22 308 117 100 0 chr1 33372448 33372508 -248821156 + L1MA9 LINE L1 6208 6273 -39 25 0 0 0 chr1 33372524 33372549 -248821115 + AT_rich Low_complexity Low_complexity 1 25 0 301 300 86 30 chr1 33372652 33372824 -248820840 + MIR3 SINE MIR 3 180 -62 404 345 75 18 chr1 33372993 33373219 -248820445 + L2 LINE L2 3075 3313 0 820 257 30 45 chr1 33373323 33373588 -248820076 + MIR SINE MIR 2 262 0 231 333 29 29 chr1 33373728 33373833 -248819831 + MIR SINE MIR 27 131 -131 301 311 41 49 chr1 33373945 33374067 -248819597 + L2 LINE L2 3151 3271 -1 281 272 62 0 chr1 33374238 33374319 -248819345 + MIR SINE MIR 88 173 -89 388 354 33 23 chr1 33374356 33374571 -248819093 - L2 LINE L2 -469 2845 2629 288 310 97 41 chr1 33374638 33374787 -248818877 + MIR SINE MIR 5 159 -63 247 323 57 24 chr1 33376731 33376855 -248816809 + L2 LINE L2 3145 3272 0 289 331 90 14 chr1 33376925 33377070 -248816594 + MIR SINE MIR 47 202 -60 372 164 0 0 chr1 33377449 33377516 -248816148 + (CA)n Simple_repeat Simple_repeat 1 67 0 417 280 131 6 chr1 33378689 33378857 -248814807 - MIR SINE MIR -62 200 12 483 296 179 0 chr1 33378901 33379080 -248814584 + MIR SINE MIR 50 260 -2 182 276 48 103 chr1 33379545 33379690 -248813974 - MIR SINE MIR -6 256 120 256 239 30 15 chr1 33379794 33379861 -248813803 + MIR3 SINE MIR 97 164 -44 262 315 176 24 chr1 33380471 33380636 -248813028 - MIR SINE MIR -19 243 54 270 224 95 86 chr1 33381227 33381343 -248812321 + L2 LINE L2 3189 3305 -8 258 234 104 39 chr1 33381358 33381435 -248812229 - MIR SINE MIR -57 205 124 2480 42 3 10 chr1 33381725 33382034 -248811630 - AluY SINE Alu -4 307 1 452 256 24 36 chr1 33382468 33382636 -248811028 + C-rich Low_complexity Low_complexity 6 171 0 311 237 27 0 chr1 33382655 33382805 -248810859 + C-rich Low_complexity Low_complexity 1 154 0 253 238 0 113 chr1 33383973 33384053 -248809611 + MIR3 SINE MIR 97 167 -41 355 178 137 0 chr1 33384547 33384620 -248809044 + MIR SINE MIR 66 148 -114 597 281 60 0 chr1 33384989 33385174 -248808490 - MIR SINE MIR -54 208 13 351 275 162 0 chr1 33385289 33385431 -248808233 + MIR SINE MIR 49 213 -49 355 228 65 0 chr1 33386057 33386149 -248807515 + MIR SINE MIR 86 183 -79 424 248 59 0 chr1 33386588 33386689 -248806975 + MIR SINE MIR 46 152 -110 209 264 8 139 chr1 33386868 33386997 -248806667 - MIR3 SINE MIR -16 192 81 245 247 164 0 chr1 33387016 33387089 -248806575 + MIR SINE MIR 63 147 -115 735 221 77 6 chr1 33388308 33388489 -248805175 + MIR SINE MIR 2 195 -67 364 276 230 7 chr1 33388486 33388638 -248805026 - MIR SINE MIR -57 205 20 * 482 252 11 16 chr1 33388846 33388982 -248804682 + MIR3 SINE MIR 15 150 -81 255 159 0 0 chr1 33389080 33389124 -248804540 + L1ME2 LINE L1 6112 6155 -9 496 253 13 39 chr1 33389253 33389407 -248804257 - MIR SINE MIR -67 195 46 410 289 47 0 chr1 33389647 33389775 -248803889 + L2 LINE L2 3138 3271 -1 236 309 64 18 chr1 33390999 33391109 -248802555 + MIR SINE MIR 28 142 -66 1912 171 7 0 chr1 33391196 33391505 -248802159 - AluJb SINE Alu -1 311 1 384 177 45 30 chr1 33391535 33391638 -248802026 - MLT1I LTR MaLR -2 407 319 271 240 10 10 chr1 33391956 33392056 -248801608 + CT-rich Low_complexity Low_complexity 3 102 0 195 217 22 0 chr1 33392183 33392229 -248801435 - L3b LINE CR1 -2 1581 1535 773 266 49 4 chr1 33392588 33392814 -248800850 + LTR16C LTR ERVL 227 462 -29 188 357 40 50 chr1 33393661 33393860 -248799804 + L2 LINE L2 2177 2373 -941 189 320 27 13 chr1 33394086 33394161 -248799503 + MIR SINE MIR 49 124 -84 297 240 100 10 chr1 33394939 33395039 -248798625 + MIR SINE MIR 32 140 -68 182 324 108 10 chr1 33395250 33395352 -248798312 + L2 LINE L2 2695 2806 -508 322 245 20 87 chr1 33395442 33395638 -248798026 + MLT1K LTR MaLR 386 568 -20 322 328 215 21 chr1 33395745 33396080 -248797584 + L2 LINE L2 2832 3231 -41 320 252 25 0 chr1 33396224 33396343 -248797321 + (TG)n Simple_repeat Simple_repeat 2 123 0 379 258 19 6 chr1 33396723 33396882 -248796782 + (TG)n Simple_repeat Simple_repeat 2 162 0 1500 241 146 25 chr1 33398600 33399114 -248794550 + MLT1K LTR MaLR 13 588 0 184 254 17 51 chr1 33399114 33399173 -248794491 - MIR SINE MIR -115 147 91 409 332 105 18 chr1 33399187 33399416 -248794248 + L2 LINE L2 2938 3186 -86 198 103 0 0 chr1 33399479 33399508 -248794156 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 485 280 30 0 chr1 33399510 33399642 -248794022 - MIR3 SINE MIR -14 194 59 420 315 8 0 chr1 33400001 33400128 -248793536 - L3 LINE CR1 -81 1496 1369 435 210 32 51 chr1 33400817 33400915 -248792749 + L1ME4a LINE L1 5967 6062 -59 1873 171 0 7 chr1 33400915 33401225 -248792439 - AluJo SINE Alu -4 308 1 435 210 32 51 chr1 33401225 33401283 -248792381 + L1ME4a LINE L1 6062 6120 -1 664 325 80 64 chr1 33401284 33401721 -248791943 - L3 LINE CR1 -187 1390 947 288 212 40 111 chr1 33401748 33401847 -248791817 - MIR SINE MIR -139 123 32 895 264 62 65 chr1 33402410 33402623 -248791041 + LTR16A1 LTR ERVL 27 239 -218 2109 228 114 4 chr1 33402623 33403132 -248790532 + MLT1F1 LTR MaLR 1 565 -2 895 264 62 65 chr1 33403132 33403350 -248790314 + LTR16A1 LTR ERVL 239 457 0 262 211 0 0 chr1 33403352 33403404 -248790260 - MIR SINE MIR -141 121 70 268 268 0 14 chr1 33403710 33403781 -248789883 - MIR SINE MIR -119 89 20 272 308 107 35 chr1 33404020 33404189 -248789475 - MIR SINE MIR -12 250 70 191 244 211 0 chr1 33404683 33404773 -248788891 - MIR SINE MIR -66 196 88 * 281 271 57 14 chr1 33404746 33404886 -248788778 - L2 LINE L2 -214 3058 2913 181 123 14 68 chr1 33405434 33405507 -248788157 + GA-rich Low_complexity Low_complexity 5 73 0 517 142 71 0 chr1 33405554 33405709 -248787955 + GA-rich Low_complexity Low_complexity 2 167 0 * 773 234 0 4 chr1 33405691 33405939 -248787725 + G-rich Low_complexity Low_complexity 1 247 0 197 207 0 35 chr1 33405933 33405991 -248787673 + A-rich Low_complexity Low_complexity 1 56 0 * 555 141 0 0 chr1 33405996 33406088 -248787576 + (G)n Simple_repeat Simple_repeat 1 92 0 196 380 0 14 chr1 33406799 33406870 -248786794 + L2 LINE L2 3104 3173 -99 429 247 140 7 chr1 33407753 33407903 -248785761 - L2 LINE L2 -423 2891 2722 263 314 36 36 chr1 33407990 33408127 -248785537 - MIR3 SINE MIR -57 151 15 840 285 0 5 chr1 33408387 33408601 -248785063 + MIR SINE MIR 2 214 -48 341 237 144 0 chr1 33408831 33408928 -248784736 + MIR SINE MIR 148 258 -4 282 56 0 0 chr1 33409010 33409046 -248784618 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 249 278 287 9 chr1 33409142 33409257 -248784407 - L3 LINE CR1 -5 1572 1426 382 399 66 7 chr1 33409310 33409581 -248784083 - L3 LINE CR1 -499 1078 792 494 224 124 58 chr1 33409582 33409805 -248783859 + MIR SINE MIR 8 248 -14 321 284 57 74 chr1 33410101 33410277 -248783387 + L3 LINE CR1 1391 1563 -14 256 246 0 0 chr1 33410371 33410428 -248783236 - MIR SINE MIR -87 121 65 258 270 51 34 chr1 33410525 33410703 -248782961 - Charlie7 DNA MER1_type -17 2595 2415 444 283 17 50 chr1 33410877 33411074 -248782590 - MIR SINE MIR -59 149 3 223 278 48 75 chr1 33411239 33411405 -248782259 - MIR SINE MIR -70 192 34 432 286 164 9 chr1 33411494 33411714 -248781950 - MIR SINE MIR -6 256 3 229 311 126 0 chr1 33411793 33411912 -248781752 + MIR3 SINE MIR 15 148 -60 536 256 108 24 chr1 33412395 33412605 -248781059 + MIR SINE MIR 19 248 -14 294 381 46 0 chr1 33412815 33412988 -248780676 - L2 LINE L2 -192 3080 2900 298 301 28 42 chr1 33413040 33413183 -248780481 - MIR3 SINE MIR -66 142 2 286 298 14 21 chr1 33413573 33413714 -248779950 + (ATGGTG)n Simple_repeat Simple_repeat 6 145 0 448 306 41 24 chr1 33414528 33414698 -248778966 + MIR SINE MIR 28 200 -62 1220 280 51 11 chr1 33414767 33415220 -248778444 + L1ME3A LINE L1 5700 6170 0 237 201 288 50 chr1 33415384 33415523 -248778141 - L2 LINE L2 -251 3062 2891 299 119 169 0 chr1 33416138 33416197 -248777467 + MER2 DNA MER2_type 277 345 0 254 168 142 0 chr1 33416405 33416499 -248777165 + MIR SINE MIR 33 147 -61 2111 121 0 0 chr1 33417171 33417461 -248776203 + AluSx SINE Alu 1 290 -22 314 290 40 40 chr1 33417543 33417667 -248775997 - MIR SINE MIR -79 183 60 220 304 49 29 chr1 33417744 33417846 -248775818 - L2 LINE L2 -216 3056 2953 257 325 68 8 chr1 33417940 33418057 -248775607 + MIR3 SINE MIR 64 187 -21 343 325 146 26 chr1 33418100 33418442 -248775222 + L2 LINE L2 2826 3208 -64 1679 99 126 4 chr1 33418534 33418796 -248774868 - AluSx SINE Alu -18 294 1 3187 218 45 11 chr1 33418830 33419629 -248774035 + L1MC3 LINE L1 6937 7762 -23 1948 157 0 13 chr1 33419964 33420277 -248773387 + AluJo SINE Alu 1 309 -3 743 191 88 52 chr1 33420891 33421085 -248772579 + MER20 DNA MER1_type 1 201 -18 596 312 57 19 chr1 33421416 33421730 -248771934 + MER102b DNA MER1_type 16 341 0 440 202 75 0 chr1 33421750 33421844 -248771820 - MIR SINE MIR -60 148 48 195 257 43 29 chr1 33421970 33422040 -248771624 + L3 LINE CR1 1504 1574 -3 970 232 24 24 chr1 33422087 33422333 -248771331 - MIR SINE MIR -4 258 13 210 297 11 44 chr1 33422434 33422525 -248771139 + L3b LINE CR1 1340 1427 -156 182 306 0 0 chr1 33422656 33422705 -248770959 - MIR SINE MIR -104 104 56 322 220 44 22 chr1 33423187 33423278 -248770386 - MIR SINE MIR -58 150 58 505 311 36 18 chr1 33423708 33423930 -248769734 - MIR SINE MIR -5 257 32 856 251 5 0 chr1 33423960 33424151 -248769513 - MIR SINE MIR -43 219 28 496 207 14 35 chr1 33425367 33425512 -248768152 - MER113 DNA MER1_type? -348 173 32 429 272 44 68 chr1 33425529 33425705 -248767959 + MIR SINE MIR 34 206 -56 216 333 0 14 chr1 33425751 33425823 -248767841 - MIR SINE MIR -108 100 30 2068 203 100 24 chr1 33426039 33426508 -248767156 + MLT1D LTR MaLR 1 505 0 368 291 29 0 chr1 33426599 33426702 -248766962 + MIR SINE MIR 62 167 -95 186 286 8 0 chr1 33427446 33427507 -248766157 - MIR SINE MIR -87 121 59 188 325 75 0 chr1 33428305 33428385 -248765279 + MIR SINE MIR 106 191 -71 195 42 0 0 chr1 33428654 33428678 -248764986 + (GAA)n Simple_repeat Simple_repeat 2 25 0 438 273 114 23 chr1 33428770 33428990 -248764674 + MLT1L LTR MaLR 303 542 -73 538 280 15 0 chr1 33429028 33429160 -248764504 - L2 LINE L2 -46 3267 3134 287 345 7 56 chr1 33429193 33429335 -248764329 + MIR3 SINE MIR 48 182 -26 312 27 0 0 chr1 33429709 33429746 -248763918 + (CA)n Simple_repeat Simple_repeat 1 37 0 1767 176 10 0 chr1 33430225 33430521 -248763143 - AluJo SINE Alu -13 299 1 362 198 126 63 chr1 33430796 33430907 -248762757 - L2 LINE L2 0 3313 3196 444 346 22 22 chr1 33431158 33431337 -248762327 + MIR SINE MIR 9 187 -75 241 304 18 0 chr1 33431991 33432074 -248761590 - MIR SINE MIR -90 172 89 334 345 27 66 chr1 33432298 33432556 -248761108 - L1ME4a LINE L1 -5 6116 5869 189 0 0 0 chr1 33432571 33432592 -248761072 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 2043 98 11 0 chr1 33432603 33432877 -248760787 - AluSq SINE Alu -36 277 1 1266 304 49 16 chr1 33432879 33433455 -248760209 - L1MC4a LINE L1 -1958 5850 5256 2414 82 3 0 chr1 33433516 33433820 -248759844 - AluSx SINE Alu -7 305 1 225 127 44 0 chr1 33434208 33434253 -248759411 + MIR SINE MIR 102 149 -59 227 206 0 48 chr1 33434366 33434429 -248759235 - L2 LINE L2 -205 3067 3008 401 272 6 74 chr1 33434508 33434670 -248758994 - MIR SINE MIR -66 196 46 305 237 86 11 chr1 33435435 33435528 -248758136 - MIR SINE MIR -88 120 21 1542 144 11 29 chr1 33435604 33435881 -248757783 + AluJo SINE Alu 35 306 -6 251 219 45 77 chr1 33435908 33436012 -248757652 + MIR3 SINE MIR 79 157 -51 23 0 0 0 chr1 33436302 33436325 -248757339 + AT_rich Low_complexity Low_complexity 1 23 0 222 37 0 0 chr1 33436415 33436442 -248757222 + (CA)n Simple_repeat Simple_repeat 1 27 0 879 263 177 7 chr1 33436508 33437296 -248756368 + L1MC4 LINE L1 6824 7904 -138 606 122 0 0 chr1 33437446 33437528 -248756136 - AluJ/FRAM SINE Alu -14 298 217 2088 136 0 3 chr1 33437538 33437839 -248755825 - AluJb SINE Alu -12 300 1 921 148 0 0 chr1 33437839 33437974 -248755690 - AluJo SINE Alu -177 135 1 259 294 71 0 chr1 33438171 33438297 -248755367 + MIR3 SINE MIR 49 183 -25 321 208 75 47 chr1 33438300 33438406 -248755258 + MIR SINE MIR 33 141 -121 1495 153 52 22 chr1 33439262 33439530 -248754134 + AluJb SINE Alu 1 276 -36 438 69 0 0 chr1 33439536 33439594 -248754070 + (GGAGA)n Simple_repeat Simple_repeat 5 62 0 1798 131 39 23 chr1 33441640 33441928 -248751736 + AluSx SINE Alu 1 296 -16 1455 0 0 32 chr1 33441928 33442114 -248751550 + (GGAAA)n Simple_repeat Simple_repeat 1 180 0 1798 131 39 23 chr1 33442114 33442131 -248751533 + AluSx SINE Alu 296 311 -1 215 81 97 32 chr1 33442138 33442200 -248751464 + GA-rich Low_complexity Low_complexity 1 66 0 611 259 25 0 chr1 33442760 33442918 -248750746 - MIR SINE MIR -71 191 30 268 338 140 6 chr1 33442885 33443042 -248750622 + MIR SINE MIR 20 197 -65 * 520 190 344 0 chr1 33444006 33444169 -248749495 + MIR SINE MIR 21 239 -23 558 256 39 118 chr1 33444198 33444553 -248749111 + MLT1K LTR MaLR 97 423 -165 446 266 53 2 chr1 33444673 33444806 -248748858 - MIR SINE MIR -42 166 28 601 273 53 38 chr1 33444911 33445120 -248748544 + MIR SINE MIR 48 259 -3 263 285 36 7 chr1 33445216 33445349 -248748315 - MIR SINE MIR -61 147 13 335 233 14 0 chr1 33445578 33445651 -248748013 + MIR SINE MIR 84 157 -105 4274 164 5 28 chr1 33445683 33445722 -248747942 + L1MB3 LINE L1 5433 5471 -712 1882 149 0 32 chr1 33445722 33446031 -248747633 - AluJb SINE Alu -13 299 1 4274 164 5 28 chr1 33446031 33446739 -248746925 + L1MB3 LINE L1 5471 6193 10 2816 117 9 47 chr1 33446739 33446826 -248746838 + MSTC LTR MaLR 1 90 -338 1866 98 0 128 chr1 33446826 33446885 -248746779 - AluSx SINE Alu 0 312 247 207 0 0 0 chr1 33446885 33446908 -248746756 + (GAGTG)n Simple_repeat Simple_repeat 5 27 0 1866 98 0 128 chr1 33446908 33446936 -248746728 - AluSx SINE Alu -65 247 217 228 67 0 0 chr1 33446936 33446966 -248746698 + (GAGTG)n Simple_repeat Simple_repeat 5 34 0 1866 98 0 128 chr1 33446966 33446994 -248746670 - AluSx SINE Alu -95 217 187 360 0 0 0 chr1 33446994 33447034 -248746630 + (GAGTG)n Simple_repeat Simple_repeat 5 44 0 1866 98 0 128 chr1 33447034 33447274 -248746390 - AluSx SINE Alu -125 187 1 2816 117 9 47 chr1 33447274 33447630 -248746034 + MSTC LTR MaLR 90 427 -1 4274 164 5 28 chr1 33447630 33447642 -248746022 + L1MB3 LINE L1 6192 6176 -7 216 308 112 35 chr1 33447667 33447810 -248745854 - L2 LINE L2 -246 3026 2873 225 275 13 30 chr1 33448241 33448455 -248745209 + CT-rich Low_complexity Low_complexity 1 210 0 458 326 99 27 chr1 33448681 33448975 -248744689 - L2 LINE L2 -46 3267 2953 740 324 69 6 chr1 33449113 33449474 -248744190 + L1ME LINE L1 5384 5767 -354 2217 113 7 0 chr1 33449599 33449908 -248743756 - AluSx SINE Alu -1 311 1 237 169 13 104 chr1 33449909 33449986 -248743678 + MIR SINE MIR 63 132 -130 321 310 127 6 chr1 33450110 33450268 -248743396 - MIR SINE MIR -48 214 38 351 200 0 27 chr1 33450281 33450356 -248743308 + L2 LINE L2 2987 3059 -213 269 310 132 0 chr1 33450679 33450808 -248742856 + MIR SINE MIR 117 262 0 37 23 0 0 chr1 33451112 33451156 -248742508 + GC_rich Low_complexity Low_complexity 1 44 0 785 256 65 24 chr1 33451297 33451543 -248742121 + MIR SINE MIR 7 262 0 374 250 102 23 chr1 33451617 33451745 -248741919 + MIR SINE MIR 51 188 -74 197 318 35 24 chr1 33451853 33451938 -248741726 - MIR SINE MIR -136 126 41 209 263 126 21 chr1 33452089 33452184 -248741480 + MIR SINE MIR 40 144 -118 605 186 148 60 chr1 33452574 33452757 -248740907 - MIR SINE MIR -51 211 13 384 261 97 57 chr1 33453415 33453591 -248740073 + L2 LINE L2 2924 3106 -166 687 259 48 5 chr1 33453682 33453871 -248739793 - MIR SINE MIR -2 260 64 290 339 24 8 chr1 33454066 33454103 -248739561 - MIR SINE MIR -77 185 150 1436 169 17 0 chr1 33454103 33454334 -248739330 + MER46A DNA MER2_type 2 236 0 290 339 24 8 chr1 33454334 33454420 -248739244 - MIR SINE MIR -112 150 60 673 274 95 17 chr1 33454661 33454902 -248738762 + MIR SINE MIR 3 262 0 446 294 18 76 chr1 33455087 33455168 -248738496 + MIR SINE MIR 25 109 -153 1428 158 44 57 chr1 33455168 33455350 -248738314 - AluJo SINE Alu 0 312 129 2100 121 3 0 chr1 33455350 33455648 -248738016 - AluSp SINE Alu -14 299 1 1428 158 44 57 chr1 33455648 33455666 -248737998 - AluJo SINE Alu -183 129 112 2170 112 3 3 chr1 33455666 33455979 -248737685 - AluSq SINE Alu 0 313 1 1428 158 44 57 chr1 33455979 33456093 -248737571 - AluJo SINE Alu -200 112 1 446 294 18 76 chr1 33456093 33456205 -248737459 + MIR SINE MIR 109 215 -47 237 283 94 9 chr1 33456706 33456812 -248736852 - MIR3 SINE MIR -4 204 90 471 18 0 0 chr1 33457071 33457127 -248736537 + (TG)n Simple_repeat Simple_repeat 2 57 0 251 323 0 40 chr1 33457429 33457528 -248736136 - HERV30 LTR ERV1 -4364 3893 3799 216 97 0 0 chr1 33457579 33457610 -248736054 + (TG)n Simple_repeat Simple_repeat 2 32 0 306 286 124 10 chr1 33457816 33458009 -248735655 + MIR SINE MIR 23 241 -21 316 300 96 23 chr1 33458071 33458291 -248735373 + L2 LINE L2 2820 3055 -217 235 102 20 20 chr1 33458329 33458378 -248735286 + (TTCC)n Simple_repeat Simple_repeat 2 50 0 376 361 75 14 chr1 33458378 33458697 -248734967 - HAL1 LINE L1 -1218 1289 982 330 202 20 10 chr1 33458814 33458913 -248734751 + CT-rich Low_complexity Low_complexity 1 100 0 906 191 6 0 chr1 33458913 33459070 -248734594 - FRAM SINE Alu -18 158 1 443 303 37 32 chr1 33459190 33459378 -248734286 + L2 LINE L2 3124 3312 -1 292 238 133 114 chr1 33459373 33459544 -248734120 + MIR SINE MIR 9 180 -62 * 650 229 20 0 chr1 33459610 33459763 -248733901 - MIR SINE MIR -15 247 92 295 310 21 56 chr1 33459852 33459994 -248733670 + MIR3 SINE MIR 25 161 -47 1043 208 160 14 chr1 33460007 33460232 -248733432 - MER102b DNA MER1_type -1088 340 61 189 0 0 0 chr1 33460232 33460253 -248733411 + (GAAA)n Simple_repeat Simple_repeat 2 22 0 1043 208 160 14 chr1 33460253 33460320 -248733344 - MER102b DNA MER1_type -1367 61 5 615 281 33 67 chr1 33460370 33460640 -248733024 - MIR SINE MIR 0 262 2 2240 81 24 0 chr1 33461002 33461300 -248732364 - AluY SINE Alu -6 305 1 2447 64 0 6 chr1 33461604 33461917 -248731747 - AluY SINE Alu 0 311 1 301 238 20 30 chr1 33461931 33461975 -248731689 - L1ME3 LINE L1 -1 6161 6118 2151 103 0 3 chr1 33461975 33462276 -248731388 - AluSx SINE Alu -12 300 1 301 238 20 30 chr1 33462276 33462332 -248731332 - L1ME3 LINE L1 -44 6118 6062 2199 108 7 0 chr1 33462428 33462733 -248730931 - AluSx SINE Alu -5 307 1 645 265 6 24 chr1 33462998 33463168 -248730496 + MIR SINE MIR 21 187 -75 583 313 6 11 chr1 33463236 33463412 -248730252 - MIR SINE MIR -72 190 16 303 224 0 8 chr1 33463658 33463733 -248729931 + MIR SINE MIR 30 101 -124 1889 246 103 26 chr1 33463938 33464597 -248729067 - L1ME1 LINE L1 -30 6136 5427 506 293 169 24 chr1 33464653 33464943 -248728721 + L3 LINE CR1 1244 1575 -2 2130 133 0 0 chr1 33465788 33466096 -248727568 + AluSx SINE Alu 1 308 -4 1527 278 64 40 chr1 33466150 33466679 -248726985 + MLT1F LTR MaLR 1 542 0 636 249 3 0 chr1 33466865 33467214 -248726450 + CT-rich Low_complexity Low_complexity 1 350 0 343 260 59 91 chr1 33467944 33468163 -248725501 + MLT1K LTR MaLR 28 239 -349 250 336 60 35 chr1 33468161 33468277 -248725387 + MLT1K LTR MaLR 454 572 -16 * 347 189 111 11 chr1 33468298 33468388 -248725276 + MIR3 SINE MIR 88 186 -22 380 288 61 24 chr1 33468779 33468991 -248724673 + L2 LINE L2 2804 3023 -249 630 271 271 10 chr1 33468994 33469385 -248724279 - L2 LINE L2 0 3313 2821 293 322 21 14 chr1 33470135 33470278 -248723386 - L2 LINE L2 -292 3021 2878 21 0 0 0 chr1 33470374 33470395 -248723269 + AT_rich Low_complexity Low_complexity 1 21 0 2267 63 28 0 chr1 33470401 33470688 -248722976 + AluSx SINE Alu 1 295 -17 324 357 76 0 chr1 33471229 33471386 -248722278 - MIR SINE MIR -85 177 9 1703 116 101 0 chr1 33471435 33471712 -248721952 - AluSq SINE Alu -8 305 1 266 200 165 12 chr1 33471716 33471801 -248721863 - MIR3 SINE MIR -46 162 65 * 301 265 45 37 chr1 33471792 33471974 -248721690 + MIR3 SINE MIR 15 202 -60 253 363 105 0 chr1 33472539 33472729 -248720935 - MIR SINE MIR 0 262 53 2278 89 10 0 chr1 33472737 33473041 -248720623 + AluSx SINE Alu 1 307 -5 280 322 92 13 chr1 33473163 33473315 -248720349 - MLT1J LTR MaLR -103 408 245 1806 106 48 4 chr1 33473365 33473668 -248719996 + AluSx SINE Alu 1 315 0 285 270 35 43 chr1 33473971 33474086 -248719578 + MIR SINE MIR 79 192 -70 295 289 10 21 chr1 33474184 33474281 -248719383 + MIR SINE MIR 117 212 -50 351 282 90 32 chr1 33474884 33475040 -248718624 + MIR3 SINE MIR 44 208 0 372 272 11 0 chr1 33476614 33476706 -248716958 - MER74C LTR ERVL -358 102 10 1899 127 3 3 chr1 33477457 33477741 -248715923 + AluSx SINE Alu 21 304 -8 342 282 203 12 chr1 33478075 33478238 -248715426 + MIR SINE MIR 20 213 -49 524 256 78 17 chr1 33478305 33478485 -248715179 + MIR3 SINE MIR 17 207 -1 2026 119 0 3 chr1 33478637 33478949 -248714715 + AluSx SINE Alu 1 311 0 351 0 0 0 chr1 33479570 33479609 -248714055 + (TG)n Simple_repeat Simple_repeat 2 40 0 318 347 92 26 chr1 33479833 33480330 -248713334 + L2 LINE L2 2555 3091 -181 25 0 0 0 chr1 33480814 33480839 -248712825 + GC_rich Low_complexity Low_complexity 1 25 0 189 312 190 47 chr1 33481621 33481874 -248711790 - L2 LINE L2 -1 3271 2983 268 307 45 0 chr1 33482059 33482147 -248711517 + L2 LINE L2 3217 3308 -5 238 327 81 31 chr1 33482209 33482469 -248711195 - L2 LINE L2 -739 2575 2303 2292 57 3 10 chr1 33482556 33482882 -248710782 + AluY SINE Alu 1 311 0 420 206 52 0 chr1 33482946 33483043 -248710621 + MIR SINE MIR 34 135 -73 265 273 10 61 chr1 33483655 33483754 -248709910 + L2 LINE L2 3179 3272 0 754 315 24 4 chr1 33484017 33484044 -248709620 + MIR SINE MIR 7 32 -230 1971 137 3 0 chr1 33484044 33484336 -248709328 + AluSx SINE Alu 1 293 -19 754 315 24 4 chr1 33484336 33484559 -248709105 + MIR SINE MIR 32 262 0 514 233 98 37 chr1 33484695 33484858 -248708806 + MER5B DNA MER1_type 1 173 -5 738 189 61 28 chr1 33484871 33485051 -248708613 + MER5A DNA MER1_type 1 186 -3 197 247 101 45 chr1 33485173 33485262 -248708402 - MIR SINE MIR -44 218 125 219 285 51 21 chr1 33485892 33485986 -248707678 + MIR SINE MIR 20 115 -93 219 313 42 0 chr1 33486523 33486619 -248707045 + L2 LINE L2 2745 2844 -470 382 277 12 64 chr1 33486787 33486990 -248706674 - L1M LINE L1 -769 5405 5212 196 347 31 77 chr1 33487022 33487244 -248706420 + L2 LINE L2 2275 2486 -828 401 298 105 0 chr1 33487244 33487368 -248706296 - L1ME3A LINE L1 -17 6153 6017 402 246 16 8 chr1 33487373 33487501 -248706163 - L1MC4 LINE L1 -1339 6983 1995 352 302 47 0 chr1 33487471 33487557 -248706107 - L1MC4 LINE L1 -1339 6983 6894 * 606 251 68 87 chr1 33487557 33487779 -248705885 - L1ME3A LINE L1 -214 5956 5744 2143 95 17 0 chr1 33487779 33488073 -248705591 - AluSg SINE Alu -11 299 1 606 251 68 87 chr1 33488073 33488264 -248705400 - L1ME3A LINE L1 -426 5744 5551 335 275 46 55 chr1 33488260 33488368 -248705296 - L1ME3A LINE L1 -2695 3451 3344 * 2317 51 40 0 chr1 33488368 33488664 -248705000 - AluY SINE Alu -3 308 1 335 275 46 55 chr1 33488664 33488773 -248704891 - L1ME3A LINE L1 -2802 3344 3236 195 42 0 0 chr1 33488995 33489019 -248704645 + (CA)n Simple_repeat Simple_repeat 1 24 0 402 213 0 0 chr1 33489391 33489471 -248704193 - MIR SINE MIR -117 145 66 375 303 16 25 chr1 33489522 33489644 -248704020 - MIR SINE MIR -133 129 9 218 301 18 9 chr1 33489733 33489846 -248703818 - L2 LINE L2 -255 3017 2904 206 370 10 10 chr1 33490537 33490637 -248703027 + MIR SINE MIR 40 139 -123 619 284 57 39 chr1 33490680 33490909 -248702755 - MIR SINE MIR 0 262 30 843 306 164 14 chr1 33490981 33491906 -248701758 - L2 LINE L2 -93 3220 2150 268 207 11 11 chr1 33491908 33491995 -248701669 + GA-rich Low_complexity Low_complexity 3 89 0 194 287 23 58 chr1 33492659 33492746 -248700918 + MIR SINE MIR 71 154 -108 194 114 0 45 chr1 33492850 33492894 -248700770 + (CAGAGA)n Simple_repeat Simple_repeat 1 42 0 2037 102 48 0 chr1 33492975 33493270 -248700394 + AluSq SINE Alu 1 309 -4 299 219 0 8 chr1 33493282 33493405 -248700259 + GA-rich Low_complexity Low_complexity 1 122 0 550 220 102 99 chr1 33493557 33493989 -248699675 + L1ME4a LINE L1 5547 5979 -142 388 301 6 43 chr1 33494098 33494261 -248699403 - L3b LINE CR1 -253 1330 1174 1964 122 17 11 chr1 33494486 33494773 -248698891 + AluSx SINE Alu 1 289 -23 203 152 0 0 chr1 33596843 33596876 -248596788 + CT-rich Low_complexity Low_complexity 4 36 0 2345 90 0 6 chr1 33597222 33597533 -248596131 + AluSc SINE Alu 1 309 0 204 333 53 61 chr1 33598378 33598492 -248595172 - L2 LINE L2 0 3313 3201 * 219 375 38 0 chr1 33598488 33598622 -248595042 + L2 LINE L2 2876 3017 -296 500 231 139 29 chr1 33598874 33599047 -248594617 + MIR SINE MIR 1 192 -70 5429 203 33 7 chr1 33599333 33600589 -248593075 - MST-int LTR MaLR -385 1266 1 303 28 0 0 chr1 33600601 33600637 -248593027 + (CA)n Simple_repeat Simple_repeat 2 37 0 21 0 0 0 chr1 33600776 33600797 -248592867 + AT_rich Low_complexity Low_complexity 1 21 0 4289 244 10 24 chr1 33601407 33602767 -248590897 + L1PA15-16 LINE L1 1710 3050 -3799 425 292 101 34 chr1 33603766 33603975 -248589689 - MIR SINE MIR -32 230 8 21 43 0 0 chr1 33604908 33604931 -248588733 + AT_rich Low_complexity Low_complexity 1 23 0 1522 224 51 23 chr1 33605378 33605812 -248587852 - MLT1C LTR MaLR 0 467 22 300 268 65 8 chr1 33607058 33607181 -248586483 - L1MC/D LINE L1 -1993 5815 5686 8257 61 110 11 chr1 33607230 33608470 -248585194 + L1P LINE L1 1 1362 -4784 207 69 0 0 chr1 33608570 33608599 -248585065 + (A)n Simple_repeat Simple_repeat 1 29 0 894 205 0 0 chr1 33608609 33608780 -248584884 + FRAM SINE Alu 1 165 -11 26 57 0 0 chr1 33609138 33609173 -248584491 + AT_rich Low_complexity Low_complexity 1 35 0 2521 71 0 0 chr1 33609173 33609484 -248584180 - AluY SINE Alu 0 311 1 748 196 6 0 chr1 33609491 33609659 -248584005 - L1MC/D LINE L1 -1094 5052 4884 * 764 235 66 12 chr1 33609652 33609895 -248583769 + L1M4 LINE L1 4562 4817 -1329 3718 155 24 27 chr1 33612362 33613325 -248580339 + L1MA8 LINE L1 5058 6022 -269 2245 102 3 10 chr1 33613330 33613633 -248580031 - AluSx SINE Alu -11 301 1 604 322 20 25 chr1 33613929 33614174 -248579490 + LTR16A LTR ERVL 207 450 0 24 53 0 0 chr1 33614835 33614873 -248578791 + AT_rich Low_complexity Low_complexity 1 38 0 1912 165 95 0 chr1 33615179 33615567 -248578097 + ERVL LTR ERVL 3704 4128 -1636 1354 141 5 0 chr1 33615566 33615779 -248577885 + ERVL LTR ERVL 4974 5187 -577 * 482 229 30 15 chr1 33617103 33617234 -248576430 + MER94 DNA DNA 1 133 -1 3001 159 33 28 chr1 33617632 33617957 -248575707 - MER73 LTR ERVL -19 625 294 315 0 0 0 chr1 33617957 33617992 -248575672 + (TC)n Simple_repeat Simple_repeat 2 36 0 3001 159 33 28 chr1 33617992 33618271 -248575393 - MER73 LTR ERVL -350 294 18 595 85 160 0 chr1 33620375 33620469 -248573195 - THE1C LTR MaLR -266 109 1 7813 21 0 0 chr1 33620493 33621473 -248572191 - L1PA3 LINE L1 0 6155 5176 2793 158 22 10 chr1 33621655 33622162 -248571502 + L1PA15 LINE L1 5652 6164 -1 560 270 38 21 chr1 33622218 33622507 -248571157 + HsTC2 DNA Tc2 1540 1833 -65 181 232 161 18 chr1 33622685 33622741 -248570923 - MER5B DNA MER1_type -109 69 6 336 238 78 93 chr1 33623112 33623305 -248570359 + L1M2 LINE L1 1185 1374 -5475 893 158 27 38 chr1 33623883 33624087 -248569577 + THE1C LTR MaLR 171 375 0 2335 75 16 3 chr1 33624580 33624886 -248568778 + AluY SINE Alu 1 310 -1 56 16 0 0 chr1 33625223 33625286 -248568378 + GC_rich Low_complexity Low_complexity 1 63 0 194 328 0 0 chr1 33625852 33625916 -248567748 - MIR SINE MIR -33 229 166 1031 245 57 48 chr1 33625955 33626392 -248567272 - L1M4 LINE L1 -1024 5122 4682 491 243 51 6 chr1 33626407 33626584 -248567080 + L1M4 LINE L1 5219 5403 -743 21 57 0 0 chr1 33626726 33626761 -248566903 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr1 33627609 33627639 -248566025 + GC_rich Low_complexity Low_complexity 1 30 0 415 134 37 24 chr1 33629818 33629900 -248563764 + MER67D LTR ERV1 5 87 -427 2479 171 40 6 chr1 33629920 33630393 -248563271 - LTR44 LTR ERV1 0 519 31 386 276 120 126 chr1 33631377 33631852 -248561812 + L1M4c LINE L1 471 1078 -5771 425 307 24 10 chr1 33633108 33633313 -248560351 - L1ME LINE L1 -454 5712 5505 536 310 113 8 chr1 33633316 33633716 -248559948 + L1M4c LINE L1 1677 2118 -4732 485 283 111 51 chr1 33633772 33634125 -248559539 + HsTC2a DNA Tc2 5 378 -366 2247 52 13 0 chr1 33634125 33634431 -248559233 + L1P LINE L1 3758 4067 -2079 1509 211 95 19 chr1 33635448 33635879 -248557785 - L1ME1 LINE L1 -5 6161 5698 8741 38 3 2 chr1 33636012 33637157 -248556507 + L1P LINE L1 2131 3276 -2870 4127 93 5 8 chr1 33637264 33637907 -248555757 + L1P LINE L1 1545 2185 -3961 307 272 79 79 chr1 33637909 33638174 -248555490 + L1M2 LINE L1 862 1126 -5723 1719 172 18 3 chr1 33738345 33738416 -248455248 + Tigger3(Golem) DNA MER2_type 2693 2761 -267 1747 178 0 25 chr1 33738416 33738736 -248454928 - AluJo SINE Alu 0 312 1 1719 172 18 3 chr1 33738736 33738995 -248454669 + Tigger3(Golem) DNA MER2_type 2761 3028 0 210 360 68 62 chr1 33739027 33739188 -248454476 - MIR SINE MIR -16 246 85 2223 86 0 10 chr1 33739833 33740176 -248453488 - AluY SINE Alu 0 311 1 1186 187 26 126 chr1 33740180 33740511 -248453153 - L1MC5 LINE L1 -30 7931 7683 1622 150 0 4 chr1 33740511 33740764 -248452900 + AluJb SINE Alu 59 310 -2 1186 187 26 126 chr1 33740764 33741019 -248452645 - L1MC5 LINE L1 -278 7683 7404 270 337 21 8 chr1 33741161 33741282 -248452382 - MIR SINE MIR -39 169 51 631 241 187 1 chr1 33741899 33742088 -248451576 - MIR SINE MIR 0 262 41 206 269 19 0 chr1 33742175 33742227 -248451437 - MIR SINE MIR -110 152 100 252 308 51 0 chr1 33742489 33742567 -248451097 - MIR3 SINE MIR -49 159 78 200 385 10 0 chr1 33742730 33742826 -248450838 + L2 LINE L2 3138 3234 -38 2071 130 0 16 chr1 33742943 33743251 -248450413 - AluSx SINE Alu -9 303 1 272 382 116 8 chr1 33743267 33743534 -248450130 + L3 LINE CR1 1176 1471 -106 593 276 87 1 chr1 33743695 33743905 -248449759 - MIR SINE MIR -32 230 5 253 41 0 61 chr1 33744288 33744337 -248449327 + (CAAAAA)n Simple_repeat Simple_repeat 2 47 0 244 211 35 0 chr1 33748323 33748380 -248445284 - MIR SINE MIR -46 216 158 480 224 143 0 chr1 33748394 33748541 -248445123 - MER104 DNA Tc2 -6 174 7 306 220 201 1 chr1 33748548 33748652 -248445012 - MIR SINE MIR -62 146 35 520 245 235 20 chr1 33749432 33749632 -248444032 - MIR SINE MIR -8 254 12 611 264 67 14 chr1 33750514 33750722 -248442942 + MIR SINE MIR 29 247 -15 585 343 33 0 chr1 33750819 33751032 -248442632 - MIR SINE MIR -27 235 16 1704 235 45 34 chr1 33751765 33751873 -248441791 + L1M4 LINE L1 3814 3919 -2227 2240 117 0 0 chr1 33751873 33752180 -248441484 + AluY SINE Alu 3 307 -4 1704 235 45 34 chr1 33752180 33752389 -248441275 + L1M4 LINE L1 3919 4124 -2022 1160 149 36 85 chr1 33752389 33752637 -248441027 - MER46A DNA MER2_type 0 236 1 1704 235 45 34 chr1 33752637 33752968 -248440696 + L1M4 LINE L1 4124 4467 -1679 770 201 127 19 chr1 33752971 33753239 -248440425 + L1M4 LINE L1 4909 5205 -941 1603 118 9 0 chr1 33753242 33753470 -248440194 + AluSg/x SINE Alu 83 312 0 1659 192 0 45 chr1 33753475 33753783 -248439881 + AluJo SINE Alu 1 294 -18 2048 132 7 4 chr1 33754649 33754959 -248438705 - AluSx SINE Alu 0 311 1 779 232 0 12 chr1 33754959 33755127 -248438537 + MER58A DNA MER1_type 44 209 -15 697 231 0 0 chr1 33755973 33756107 -248437557 - MER94 DNA DNA 0 134 1 371 297 153 12 chr1 33756360 33756636 -248437028 + L1ME4a LINE L1 5734 6099 -22 270 136 0 0 chr1 33757163 33757207 -248436457 + (CA)n Simple_repeat Simple_repeat 2 45 0 288 303 139 0 chr1 33757841 33757963 -248435701 - MIR SINE MIR -19 243 105 448 252 32 32 chr1 33758975 33759098 -248434566 + MIR SINE MIR 61 183 -79 313 236 33 39 chr1 33759201 33759346 -248434318 - MIR SINE MIR -66 196 54 546 262 105 6 chr1 33759576 33759748 -248433916 + MIR SINE MIR 16 204 -58 404 266 11 0 chr1 33759817 33759911 -248433753 - MIR3 SINE MIR -21 187 93 264 362 26 20 chr1 33760085 33760237 -248433427 + MIR3 SINE MIR 41 193 -15 431 300 0 0 chr1 33760264 33760404 -248433260 + L1ME4a LINE L1 5690 5829 -292 270 224 153 20 chr1 33760561 33760659 -248433005 + MIR SINE MIR 63 173 -89 376 273 39 8 chr1 33760825 33760953 -248432711 + L1ME4a LINE L1 5985 6116 -5 243 267 170 22 chr1 33761571 33761706 -248431958 + L2 LINE L2 2848 3002 -270 293 246 0 0 chr1 33761723 33761780 -248431884 - L2 LINE L2 -12 3301 3245 241 273 131 0 chr1 33761981 33762080 -248431584 - MIR SINE MIR -70 192 81 587 258 147 20 chr1 33762255 33762453 -248431211 - MIR SINE MIR -20 242 20 203 244 183 17 chr1 33762786 33762901 -248430763 + MIR SINE MIR 36 169 -39 295 282 73 0 chr1 33763123 33763247 -248430417 + L2 LINE L2 3136 3268 -4 262 271 56 19 chr1 33763291 33763398 -248430266 + MIR3 SINE MIR 68 178 -30 749 272 24 5 chr1 33764520 33764739 -248428925 + MIR SINE MIR 5 227 -35 250 300 127 9 chr1 33764733 33764843 -248428821 + MIR SINE MIR 66 188 -74 * 3485 168 41 28 chr1 33765139 33765499 -248428165 + L1MB8 LINE L1 5461 5815 -363 2144 113 14 0 chr1 33765499 33765791 -248427873 + AluSq SINE Alu 1 296 -17 3485 168 41 28 chr1 33765791 33766133 -248427531 + L1MB8 LINE L1 5815 6172 -6 313 189 123 58 chr1 33766156 33766288 -248427376 - MIR SINE MIR -80 128 2 2007 102 88 0 chr1 33767066 33767349 -248426315 + AluSg SINE Alu 1 308 -2 228 218 40 89 chr1 33767908 33768009 -248425655 - MIR SINE MIR -62 146 51 554 160 11 17 chr1 33768726 33768907 -248424757 + (CA)n Simple_repeat Simple_repeat 1 180 0 438 222 42 21 chr1 33768909 33769053 -248424611 + (CCCA)n Simple_repeat Simple_repeat 1 147 0 491 197 6 0 chr1 33769054 33769232 -248424432 + (CA)n Simple_repeat Simple_repeat 1 179 0 330 196 0 0 chr1 33769243 33769350 -248424314 + (CA)n Simple_repeat Simple_repeat 1 107 0 564 273 113 43 chr1 33770306 33770676 -248422988 + L2 LINE L2 2912 3307 -6 558 239 72 0 chr1 33771000 33771138 -248422526 + MIR SINE MIR 94 241 -21 350 300 54 0 chr1 33771193 33771323 -248422341 + MIR SINE MIR 108 244 -18 192 182 0 0 chr1 33771673 33771717 -248421947 + (CA)n Simple_repeat Simple_repeat 1 44 0 461 286 101 28 chr1 33771812 33771990 -248421674 - MIR SINE MIR -19 243 53 229 311 27 0 chr1 33772051 33772125 -248421539 - MIR SINE MIR -110 152 77 228 130 130 19 chr1 33772177 33772231 -248421433 - MIR SINE MIR -98 164 105 232 128 0 64 chr1 33772268 33772315 -248421349 + (CCCCCA)n Simple_repeat Simple_repeat 5 48 0 305 234 78 0 chr1 33772422 33772499 -248421165 + MIR SINE MIR 67 149 -113 262 227 8 172 chr1 33772497 33772568 -248421096 - MIR SINE MIR -3 259 217 * 2220 99 0 3 chr1 33772568 33772860 -248420804 - AluSc SINE Alu -14 295 5 262 227 8 172 chr1 33772860 33772916 -248420748 - MIR SINE MIR -45 217 153 443 289 36 36 chr1 33773606 33773772 -248419892 - MIR SINE MIR -89 173 8 197 163 143 20 chr1 33774132 33774181 -248419483 + L2 LINE L2 3201 3255 -58 1969 146 0 3 chr1 33776878 33777172 -248416492 + AluSx SINE Alu 1 293 -19 230 264 46 46 chr1 33777380 33777467 -248416197 - MIR3 SINE MIR -9 199 113 411 256 122 83 chr1 33777573 33777920 -248415744 + L1M4 LINE L1 2908 4500 -1646 636 220 55 11 chr1 33777932 33778114 -248415550 - Tigger5 DNA MER2_type -1 2322 2133 35 54 0 14 chr1 33778114 33778136 -248415528 + AT_rich Low_complexity Low_complexity 1 22 -51 2389 91 0 0 chr1 33778136 33778432 -248415232 + AluSg SINE Alu 1 296 -14 35 54 0 14 chr1 33778432 33778483 -248415181 + AT_rich Low_complexity Low_complexity 22 73 0 818 183 28 0 chr1 33778553 33778695 -248414969 + FRAM SINE Alu 12 157 -19 316 344 149 18 chr1 33778765 33778986 -248414678 - MIR SINE MIR -2 260 11 310 311 66 16 chr1 33779048 33779170 -248414494 - MIR SINE MIR -133 129 2 1728 134 108 14 chr1 33779651 33779928 -248413736 - AluJb SINE Alu -9 303 1 1787 183 33 0 chr1 33780258 33780558 -248413106 + AluJb SINE Alu 1 310 -2 1158 101 7 0 chr1 33782568 33782717 -248410947 + AluSg/x SINE Alu 136 285 -27 549 122 0 0 chr1 33782717 33782791 -248410873 - AluS SINE Alu -235 75 2 464 184 53 0 chr1 33782819 33782933 -248410731 + L1ME LINE L1 850 969 -5101 312 280 70 70 chr1 33783108 33783322 -248410342 - L2 LINE L2 -155 3117 2904 1785 161 0 4 chr1 33783390 33783657 -248410007 + AluSx SINE Alu 30 295 -17 571 303 9 1 chr1 33783846 33784006 -248409658 + MIR3 SINE MIR 3 166 -42 259 253 40 13 chr1 33784041 33784116 -248409548 + MIR3 SINE MIR 117 193 -15 901 259 63 0 chr1 33784373 33784578 -248409086 + MIR SINE MIR 28 245 -17 187 315 0 0 chr1 33784769 33784823 -248408841 + L2 LINE L2 3218 3271 -1 2283 120 0 0 chr1 33785692 33785993 -248407671 - AluSg SINE Alu -6 304 4 2132 101 14 0 chr1 33785995 33786281 -248407383 - AluSg1 SINE Alu -19 290 1 283 245 0 0 chr1 33786481 33786534 -248407130 + L2 LINE L2 3214 3266 -6 422 167 13 0 chr1 33786612 33786690 -248406974 - LTR5 LTR ERVK -889 80 2 680 303 25 0 chr1 33786724 33786922 -248406742 + MIR SINE MIR 59 261 -1 201 328 52 0 chr1 33786942 33787000 -248406664 + L2 LINE L2 3119 3179 -93 219 247 143 13 chr1 33787687 33787764 -248405900 + MIR SINE MIR 60 148 -60 593 168 133 52 chr1 33788478 33788651 -248405013 - MIR SINE MIR -56 206 20 280 241 90 45 chr1 33789557 33789690 -248403974 - L2 LINE L2 0 3272 3134 347 238 16 49 chr1 33790360 33790482 -248403182 - MIR3 SINE MIR -86 122 5 * 791 173 16 103 chr1 33790451 33790553 -248403111 + MIR SINE MIR 46 126 -136 1930 143 14 3 chr1 33790553 33790846 -248402818 + AluSx SINE Alu 1 296 -16 791 173 16 103 chr1 33790846 33790928 -248402736 + MIR SINE MIR 126 214 -48 205 191 0 0 chr1 33791087 33791129 -248402535 + T-rich Low_complexity Low_complexity 1 42 0 1816 174 0 20 chr1 33793083 33793426 -248400238 + AluJo SINE Alu 1 312 0 2060 90 7 41 chr1 33793476 33793807 -248399857 + AluY SINE Alu 1 321 0 265 342 62 20 chr1 33794168 33794394 -248399270 - MIR SINE MIR -10 252 20 2381 115 0 0 chr1 33794554 33794866 -248398798 - AluSx SINE Alu 0 312 1 415 280 7 21 chr1 33795094 33795237 -248398427 + MLT1L LTR MaLR 447 587 -28 267 242 101 20 chr1 33796144 33796243 -248397421 + MIR SINE MIR 23 129 -133 206 333 40 13 chr1 33796980 33797055 -248396609 - MIR3 SINE MIR -129 79 3 291 324 56 9 chr1 33797473 33797581 -248396083 + MIR3 SINE MIR 46 158 -50 406 222 103 16 chr1 33797742 33797868 -248395796 + MIR SINE MIR 45 181 -81 2291 104 0 10 chr1 33798481 33798778 -248394886 + AluSx SINE Alu 6 299 -13 458 202 75 28 chr1 33799221 33799380 -248394284 + MER31-int LTR ERV1 1044 1392 -394 2173 103 7 14 chr1 33799408 33799698 -248393966 - AluSx SINE Alu -24 288 1 256 143 0 43 chr1 33799698 33799768 -248393896 + MER31-int LTR ERV1 1137 1203 -3733 389 272 0 22 chr1 33799773 33799865 -248393799 + L1MC4 LINE L1 6614 6703 -1339 971 211 55 23 chr1 33799972 33800289 -248393375 - MER31-int LTR ERV1 -547 5399 4148 1450 197 96 100 chr1 33800292 33800586 -248393078 - MER31-int LTR ERV1 -1170 5161 4867 2278 76 7 40 chr1 33800586 33800890 -248392774 - AluY SINE Alu -17 294 1 1450 197 96 100 chr1 33800890 33801801 -248391863 - MER31-int LTR ERV1 -1464 4867 3954 1678 110 165 4 chr1 33801801 33802055 -248391609 + AluSx SINE Alu 1 295 -17 1450 197 96 100 chr1 33802055 33802115 -248391549 - MER31-int LTR ERV1 -2377 3954 2480 1479 208 13 36 chr1 33802537 33802845 -248390819 - AluJb SINE Alu -11 301 1 24 0 0 0 chr1 33802845 33802869 -248390795 + AT_rich Low_complexity Low_complexity 1 24 0 1581 160 0 11 chr1 33802869 33803144 -248390520 - AluSx SINE Alu 0 312 41 762 154 62 46 chr1 33803481 33803611 -248390053 - FLAM_C SINE Alu -10 133 2 22 0 0 0 chr1 33803614 33803636 -248390028 + AT_rich Low_complexity Low_complexity 1 22 0 408 252 233 0 chr1 33803947 33804106 -248389558 - MIR SINE MIR 0 262 67 1883 134 6 22 chr1 33804487 33804801 -248388863 - AluSx SINE Alu -1 311 3 1418 256 76 17 chr1 33806503 33807079 -248386585 + L1M4 LINE L1 3362 3896 -2250 196 320 174 12 chr1 33808314 33808486 -248385178 - MIR SINE MIR -8 254 55 199 192 13 90 chr1 33810051 33810129 -248383535 - L2 LINE L2 -1259 2055 1984 251 273 7 60 chr1 33810595 33810745 -248382919 + GA-rich Low_complexity Low_complexity 1 142 0 900 130 0 0 chr1 33811107 33811238 -248382426 - AluJb SINE Alu -181 131 1 2058 77 0 31 chr1 33811258 33811545 -248382119 + AluY SINE Alu 1 278 -33 198 71 0 0 chr1 33811546 33811574 -248382090 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 256 115 0 0 chr1 33811589 33811641 -248382023 + L1MA2 LINE L1 6110 6161 -143 2303 72 0 10 chr1 33811875 33812179 -248381485 + AluY SINE Alu 1 301 -10 924 161 19 0 chr1 33812195 33812356 -248381308 + AluJb SINE Alu 140 303 -9 200 284 80 11 chr1 33812637 33812725 -248380939 - MIR3 SINE MIR -54 154 61 248 273 15 0 chr1 33813176 33813242 -248380422 + C-rich Low_complexity Low_complexity 5 71 0 566 250 85 17 chr1 33813429 33813605 -248380059 + MIR3 SINE MIR 7 194 -14 1532 156 6 68 chr1 33813861 33814182 -248379482 - AluJb SINE Alu -11 301 1 514 221 221 0 chr1 33814245 33814376 -248379288 + MER69A DNA AcHobo 1 160 -17 210 288 100 0 chr1 33814675 33814755 -248378909 + MIR SINE MIR 27 114 -94 522 257 29 0 chr1 33815358 33815498 -248378166 + MIR SINE MIR 1 144 -118 330 302 0 0 chr1 33815607 33815713 -248377951 + MIR SINE MIR 155 260 -2 183 100 0 0 chr1 33816593 33816623 -248377041 + (CTGGGG)n Simple_repeat Simple_repeat 4 33 0 26 0 0 0 chr1 33817129 33817155 -248376509 + AT_rich Low_complexity Low_complexity 1 26 0 189 243 186 0 chr1 33819196 33819266 -248374398 + MIR SINE MIR 157 239 -23 530 256 124 34 chr1 33819272 33819455 -248374209 - L2 LINE L2 -10 3303 3093 2103 103 3 28 chr1 33819455 33819776 -248373888 + AluSq SINE Alu 1 313 0 530 256 124 34 chr1 33819776 33819826 -248373838 - L2 LINE L2 -220 3093 3049 1428 192 14 11 chr1 33820116 33820397 -248373267 - AluJb SINE Alu -30 282 1 208 271 59 24 chr1 33821893 33821978 -248371686 - MIR SINE MIR -109 153 66 1750 159 3 0 chr1 33822408 33822704 -248370960 + AluSx SINE Alu 2 298 -14 325 336 31 23 chr1 33822830 33822958 -248370706 + LTR26-int LTR ERV1 5771 5899 -432 445 178 26 125 chr1 33822985 33823137 -248370527 + LTR26-int LTR ERV1 4612 4748 -188 2216 90 0 10 chr1 33823259 33823558 -248370106 + AluSx SINE Alu 5 300 -12 990 142 0 25 chr1 33823604 33823766 -248369898 - AluJb SINE Alu -22 290 133 214 198 40 119 chr1 33823863 33823964 -248369700 + L2 LINE L2 2125 2217 -1097 1448 171 7 14 chr1 33823967 33824242 -248369422 + AluJo SINE Alu 17 289 -23 3515 143 35 19 chr1 33824497 33825090 -248368574 + LTR26 LTR ERV1 1 603 0 2058 90 17 14 chr1 33825122 33825412 -248368252 + AluSq SINE Alu 1 291 -22 22 0 0 0 chr1 33825575 33825597 -248368067 + AT_rich Low_complexity Low_complexity 1 22 0 2197 92 3 0 chr1 33826132 33826425 -248367239 + AluSg SINE Alu 1 294 -16 1425 167 35 42 chr1 33827667 33827978 -248365686 - AluJb SINE Alu -3 309 1 1837 105 3 25 chr1 33828145 33828430 -248365234 + AluSq SINE Alu 23 301 -12 238 116 0 23 chr1 33829274 33829311 -248364353 + MIR SINE MIR 113 149 -108 1296 155 140 63 chr1 33829311 33829646 -248364018 - MER46B DNA MER2_type 0 236 1 320 254 184 70 chr1 33830181 33830286 -248363378 + MIR SINE MIR 5 97 -165 1965 134 0 13 chr1 33830286 33830593 -248363071 + AluSx SINE Alu 1 303 -9 320 254 184 70 chr1 33830593 33830715 -248362949 + MIR SINE MIR 97 258 -4 1373 205 13 28 chr1 33831140 33831457 -248362207 + AluJo SINE Alu 1 312 0 222 197 61 61 chr1 33831760 33831826 -248361838 - MER5B DNA MER1_type -2 176 111 242 319 62 18 chr1 33832190 33832303 -248361361 - L2 LINE L2 -963 2351 2234 1025 120 18 6 chr1 33832564 33832731 -248360933 + AluSx SINE Alu 38 206 -106 294 270 38 129 chr1 33833315 33833812 -248359852 - MLT1J LTR MaLR -20 491 40 516 289 42 0 chr1 33833835 33833977 -248359687 + MIR3 SINE MIR 41 188 -20 * 666 251 45 0 chr1 33833974 33834153 -248359511 + MIR SINE MIR 42 228 -34 543 186 0 62 chr1 33834650 33834763 -248358901 - MIR SINE MIR -63 145 40 595 287 86 29 chr1 33835067 33835210 -248358454 + MIR SINE MIR 2 166 -96 1746 202 32 45 chr1 33835210 33835681 -248357983 - MLT1C LTR MaLR -2 465 1 595 287 86 29 chr1 33835681 33835781 -248357883 + MIR SINE MIR 166 259 -3 1427 135 0 0 chr1 33835910 33836118 -248357546 - AluJb SINE Alu -19 293 86 803 283 69 0 chr1 33836118 33836351 -248357313 - MIR SINE MIR -3 259 11 2304 77 3 7 chr1 33836556 33836854 -248356810 - AluSp SINE Alu -16 297 1 681 257 83 32 chr1 33837487 33837705 -248355959 - MIR SINE MIR -2 260 32 210 180 0 79 chr1 33838060 33838116 -248355548 - MIR SINE MIR -111 151 104 318 255 151 9 chr1 33838227 33838333 -248355331 + MIR SINE MIR 47 167 -95 * 472 202 0 0 chr1 33838331 33838415 -248355249 - L2 LINE L2 0 3313 3230 2427 51 3 0 chr1 33838529 33838821 -248354843 + AluSp SINE Alu 3 295 -18 222 176 0 0 chr1 33839191 33839242 -248354422 + (TG)n Simple_repeat Simple_repeat 1 51 0 341 343 6 0 chr1 33839395 33839570 -248354094 + (CA)n Simple_repeat Simple_repeat 1 176 0 1142 188 0 27 chr1 33839849 33840073 -248353591 + AluJo SINE Alu 1 218 -94 259 385 6 6 chr1 33840646 33840807 -248352857 + L2 LINE L2 2617 2777 -537 591 242 127 41 chr1 33840818 33841255 -248352409 - MLT1J LTR MaLR -2 509 1 287 285 126 76 chr1 33841280 33841360 -248352304 + L2 LINE L2 2934 3009 -263 2235 89 3 0 chr1 33841360 33841652 -248352012 + AluSx SINE Alu 1 293 -19 287 285 126 76 chr1 33841652 33841834 -248351830 + L2 LINE L2 3009 3209 -63 349 132 29 59 chr1 33841955 33842023 -248351641 - L1MC4 LINE L1 -1363 6679 6614 547 234 8 8 chr1 33842524 33842648 -248351016 - L2 LINE L2 0 3313 3190 224 30 30 0 chr1 33843189 33843222 -248350442 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 288 229 0 29 chr1 33843699 33843769 -248349895 - L2 LINE L2 0 3313 3246 1406 148 50 64 chr1 33843874 33844172 -248349492 - AluJo SINE Alu -16 296 3 874 216 32 28 chr1 33845266 33845484 -248348180 + MIR SINE MIR 6 224 -38 2111 100 10 0 chr1 33845642 33845941 -248347723 + AluSp SINE Alu 1 302 -11 221 189 200 32 chr1 33846193 33846232 -248347432 + MIR SINE MIR 75 106 -156 2030 119 0 0 chr1 33846232 33846526 -248347138 - AluSx SINE Alu -18 294 1 221 189 200 32 chr1 33846526 33846581 -248347083 + MIR SINE MIR 106 185 -77 2375 74 0 0 chr1 33847467 33847766 -248345898 - AluSg SINE Alu -11 299 1 902 209 19 10 chr1 33848023 33848229 -248345435 + Charlie4 DNA MER1_type 47 254 -1707 422 188 159 40 chr1 33848247 33848423 -248345241 + Charlie4 DNA MER1_type 1750 1946 -15 2283 97 3 0 chr1 33849561 33849871 -248343793 + AluSq SINE Alu 1 311 -2 191 297 0 0 chr1 33850527 33850564 -248343100 - L2 LINE L2 -91 3181 3145 21 0 0 0 chr1 33851983 33852004 -248341660 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 33853610 33853632 -248340032 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr1 33853738 33853759 -248339905 + AT_rich Low_complexity Low_complexity 1 21 0 1927 152 10 7 chr1 33854060 33854362 -248339302 + AluJb SINE Alu 1 303 -9 186 289 96 58 chr1 33854798 33854902 -248338762 + MIR SINE MIR 93 200 -62 205 209 0 23 chr1 33855747 33855790 -248337874 + CT-rich Low_complexity Low_complexity 3 44 0 201 273 127 0 chr1 33857136 33857191 -248336473 + L2 LINE L2 3235 3296 -17 1830 116 60 0 chr1 33857503 33857770 -248335894 + AluSx SINE Alu 1 283 -29 636 81 0 0 chr1 33857781 33857868 -248335796 + (CAGA)n Simple_repeat Simple_repeat 2 88 0 1009 228 173 64 chr1 33857884 33858370 -248335294 - L1ME LINE L1 -5239 831 293 685 236 26 41 chr1 33858412 33858607 -248335057 - L1ME LINE L1 -5861 209 18 892 172 38 13 chr1 33858614 33858771 -248334893 + FRAM SINE Alu 1 159 -17 1798 139 14 11 chr1 33859099 33859386 -248334278 + AluJb SINE Alu 1 288 -24 505 217 0 0 chr1 33859673 33859765 -248333899 - AluSg/x SINE Alu -84 228 137 418 274 26 0 chr1 33859994 33860111 -248333553 + L1ME3A LINE L1 6046 6165 -5 1288 158 8 37 chr1 33860251 33860492 -248333172 + AluJo SINE Alu 1 234 -78 235 111 28 0 chr1 33860680 33860716 -248332948 + AluJo SINE Alu 242 278 -24 1658 210 3 0 chr1 33860886 33861196 -248332468 - AluJo SINE Alu -1 311 1 2558 77 0 0 chr1 33861222 33861533 -248332131 + AluSx SINE Alu 2 312 0 256 325 94 8 chr1 33861574 33861691 -248331973 + MIR SINE MIR 58 184 -78 255 299 108 60 chr1 33861874 33862041 -248331623 - MER5B DNA MER1_type 0 178 4 2444 68 10 3 chr1 33862800 33863107 -248330557 + AluY SINE Alu 1 309 -2 898 134 18 64 chr1 33863108 33863279 -248330385 + AluSc SINE Alu 129 291 -18 349 245 39 29 chr1 33863465 33863567 -248330097 + MIR SINE MIR 108 210 -52 545 246 162 7 chr1 33863766 33863908 -248329756 - MER5A DNA MER1_type 0 189 26 2156 116 0 0 chr1 33865370 33865655 -248328009 + AluSq SINE Alu 1 285 -28 297 0 0 0 chr1 33867687 33867720 -248325944 + (GA)n Simple_repeat Simple_repeat 2 34 0 1992 118 0 36 chr1 33870787 33871093 -248322571 + AluY SINE Alu 1 295 -16 2074 139 0 7 chr1 33871379 33871689 -248321975 + AluSx SINE Alu 1 308 -4 255 47 256 0 chr1 33871975 33872018 -248321646 - MADE1 DNA Mariner 0 80 27 557 261 78 57 chr1 33872153 33872452 -248321212 + MLT1E LTR MaLR 1 304 -263 734 184 14 149 chr1 33872523 33872782 -248320882 + MLT1E LTR MaLR 317 609 60 1297 199 66 26 chr1 33872782 33873053 -248320611 + AluJo SINE Alu 1 282 -30 360 0 0 0 chr1 33873060 33873100 -248320564 + (CA)n Simple_repeat Simple_repeat 2 41 0 734 184 14 149 chr1 33873100 33873156 -248320508 + MLT1E LTR MaLR 482 544 -5 198 0 0 0 chr1 33874448 33874470 -248319194 + (A)n Simple_repeat Simple_repeat 1 22 0 1756 164 16 13 chr1 33875915 33876219 -248317445 + AluJb SINE Alu 1 305 -7 744 168 44 0 chr1 33876258 33876371 -248317293 + FLAM_C SINE Alu 1 118 -15 25 51 0 0 chr1 33876371 33876410 -248317254 + AT_rich Low_complexity Low_complexity 1 39 0 2136 97 0 4 chr1 33876421 33876700 -248316964 + AluSx SINE Alu 21 298 -14 731 165 50 8 chr1 33876748 33876869 -248316795 + FLAM_C SINE Alu 2 127 -16 26 50 0 0 chr1 33876937 33876977 -248316687 + AT_rich Low_complexity Low_complexity 1 40 0 2504 82 0 0 chr1 33877232 33877536 -248316128 - AluY SINE Alu -7 304 1 2478 83 3 0 chr1 33877556 33877868 -248315796 - AluSp SINE Alu 0 313 1 1264 178 39 13 chr1 33877961 33878191 -248315473 + MER46A DNA MER2_type 1 236 0 21 36 0 0 chr1 33878271 33878299 -248315365 + AT_rich Low_complexity Low_complexity 1 28 0 1399 88 101 42 chr1 33879314 33879531 -248314133 - MER30 DNA MER1_type 0 230 1 257 333 45 23 chr1 33879730 33879862 -248313802 - L2 LINE L2 -585 2729 2595 2099 130 7 0 chr1 33879966 33880266 -248313398 + AluSx SINE Alu 3 304 -8 1974 129 19 19 chr1 33880275 33880585 -248313079 + AluSx SINE Alu 1 310 -2 1853 178 3 0 chr1 33880966 33881270 -248312394 + AluSx SINE Alu 1 305 -7 3158 130 35 16 chr1 33881808 33882293 -248311371 - L1PA16 LINE L1 -16 6150 5657 2112 117 0 17 chr1 33884784 33885083 -248308581 + AluSx SINE Alu 1 294 -18 2236 92 17 7 chr1 33885546 33885841 -248307823 + AluSc SINE Alu 1 298 -11 185 356 35 11 chr1 33885990 33886077 -248307587 - MIR3 SINE MIR -15 193 105 2381 98 0 13 chr1 33887434 33887750 -248305914 - AluSx SINE Alu 0 312 1 1236 126 16 11 chr1 33887888 33888078 -248305586 + AluSg/x SINE Alu 119 309 -1 407 277 214 10 chr1 33888412 33888618 -248305046 + MIR SINE MIR 15 262 0 22 0 0 0 chr1 33888929 33888951 -248304713 + AT_rich Low_complexity Low_complexity 1 22 0 796 154 62 46 chr1 33888954 33889084 -248304580 + FLAM_C SINE Alu 2 133 -10 1192 160 38 9 chr1 33891513 33891725 -248301939 + AluJb SINE Alu 85 302 -10 2226 94 27 3 chr1 33891725 33892023 -248301641 + AluSx SINE Alu 1 305 -7 1130 163 19 83 chr1 33892249 33892513 -248301151 + AluJb SINE Alu 49 295 -17 237 239 157 6 chr1 33893188 33893322 -248300342 - MIR SINE MIR -62 200 44 262 96 19 19 chr1 33893677 33893729 -248299935 + (TC)n Simple_repeat Simple_repeat 2 53 0 370 97 65 0 chr1 33894294 33894356 -248299308 - Alu SINE Alu -4 296 231 22 0 0 0 chr1 33894356 33894378 -248299286 + AT_rich Low_complexity Low_complexity 1 22 0 882 151 0 78 chr1 33894463 33894615 -248299049 + AluJb SINE Alu 148 286 -26 1654 101 0 0 chr1 33894615 33894822 -248298842 + AluSx SINE Alu 1 207 -105 882 151 0 78 chr1 33894822 33894848 -248298816 + AluJb SINE Alu 286 312 0 1049 174 12 0 chr1 33894998 33895165 -248298499 - AluSg/x SINE Alu -12 300 132 1792 110 99 10 chr1 33895165 33895457 -248298207 - AluYb8 SINE Alu 0 318 1 1583 154 92 11 chr1 33895459 33895731 -248297933 - AluJo SINE Alu -18 294 1 897 144 0 7 chr1 33896161 33896300 -248297364 + AluSq/x SINE Alu 14 151 -162 1459 173 40 4 chr1 33896950 33897199 -248296465 + AluSx SINE Alu 42 299 -13 2363 83 3 0 chr1 33897265 33897566 -248296098 + AluSp SINE Alu 5 306 -7 309 344 86 16 chr1 33897772 33897869 -248295795 - MIR SINE MIR -113 149 39 2140 93 28 7 chr1 33897869 33898160 -248295504 - AluSg SINE Alu -13 297 1 309 344 86 16 chr1 33898160 33898190 -248295474 - MIR SINE MIR -223 39 13 645 114 16 65 chr1 33898229 33898352 -248295312 + FLAM_C SINE Alu 11 127 -16 1802 122 68 4 chr1 33899234 33899512 -248294152 + AluSx SINE Alu 1 296 -16 2186 68 0 89 chr1 33899560 33899885 -248293779 + AluY SINE Alu 1 296 -15 208 234 31 62 chr1 33900316 33900380 -248293284 + L2 LINE L2 3204 3265 -7 629 261 134 0 chr1 33900505 33900743 -248292921 + L1ME4a LINE L1 5559 5828 -293 243 0 0 0 chr1 33900750 33900777 -248292887 + (TA)n Simple_repeat Simple_repeat 1 27 0 1065 219 13 9 chr1 33900777 33901001 -248292663 - AluJb SINE Alu -1 311 87 2287 90 0 17 chr1 33901014 33901314 -248292350 - AluY SINE Alu -16 295 1 1967 124 7 36 chr1 33901410 33901716 -248291948 + AluSx SINE Alu 1 297 -15 273 128 0 0 chr1 33901750 33901797 -248291867 + AluSp/q SINE Alu 255 301 -2 210 286 43 29 chr1 33901807 33901877 -248291787 - MER5A DNA MER1_type -50 139 69 747 150 0 53 chr1 33901878 33902011 -248291653 - FLAM_C SINE Alu -7 126 1 184 327 45 58 chr1 33902126 33902282 -248291382 - L2 LINE L2 -184 3088 2935 505 188 60 34 chr1 33902421 33902538 -248291126 + FLAM_A SINE Alu 1 120 -13 43 20 0 0 chr1 33902539 33902589 -248291075 + AT_rich Low_complexity Low_complexity 1 50 0 202 329 21 36 chr1 33902675 33902815 -248290849 - L2 LINE L2 -578 2736 2599 790 165 0 24 chr1 33903041 33903168 -248290496 - FLAM_C SINE Alu -9 124 1 2230 194 36 2 chr1 33903242 33903654 -248290010 + MSTB LTR MaLR 1 426 0 2203 116 0 3 chr1 33903814 33904146 -248289518 + AluSx SINE Alu 1 312 0 259 256 68 26 chr1 33904415 33904532 -248289132 - L1ME4a LINE L1 -44 6077 5956 1243 146 203 29 chr1 33904565 33904811 -248288853 - AluSx SINE Alu -13 289 1 1696 107 7 59 chr1 33904999 33905289 -248288375 - AluSq SINE Alu -16 297 23 1745 145 122 33 chr1 33905730 33905911 -248287753 + L1MB8 LINE L1 5643 5807 -371 2265 66 7 3 chr1 33905911 33906213 -248287451 + AluY SINE Alu 1 303 -8 1745 145 122 33 chr1 33906213 33906459 -248287205 + L1MB8 LINE L1 5807 6108 -70 556 110 0 12 chr1 33906478 33906560 -248287104 - AluY SINE Alu -22 289 209 1919 120 33 0 chr1 33906589 33906889 -248286775 - AluSg SINE Alu 0 310 1 1809 114 24 24 chr1 33906935 33907224 -248286440 - AluSx SINE Alu -17 295 7 727 160 25 0 chr1 33907259 33907378 -248286286 + FLAM_C SINE Alu 2 123 -20 28 48 0 0 chr1 33907380 33907422 -248286242 + AT_rich Low_complexity Low_complexity 1 42 0 2072 125 0 10 chr1 33907591 33907895 -248285769 + AluSx SINE Alu 1 301 -11 2153 100 3 0 chr1 33907896 33908196 -248285468 + AluSp SINE Alu 1 301 -12 1675 117 135 8 chr1 33908295 33908561 -248285103 - AluSg SINE Alu 0 300 1 1789 146 7 4 chr1 33908707 33908987 -248284677 + AluSg SINE Alu 7 287 -23 1820 125 7 7 chr1 33909452 33909740 -248283924 + AluSq SINE Alu 1 288 -25 2242 88 10 0 chr1 33909750 33910058 -248283606 + AluY SINE Alu 1 311 0 2330 87 0 0 chr1 33910254 33910565 -248283099 - AluY SINE Alu 0 311 1 2113 110 10 0 chr1 33910715 33911014 -248282650 + AluSx SINE Alu 1 302 -10 2136 114 0 0 chr1 33911025 33911322 -248282342 + AluSx SINE Alu 1 297 -15 898 180 6 17 chr1 33911322 33911483 -248282181 + AluSq SINE Alu 135 295 -18 2333 71 0 3 chr1 33911615 33911910 -248281754 - AluSx SINE Alu -6 306 13 1513 174 50 0 chr1 33911995 33912277 -248281387 + AluSx SINE Alu 1 296 -16 28 29 0 0 chr1 33912910 33912945 -248280719 + AT_rich Low_complexity Low_complexity 1 35 0 2242 90 3 0 chr1 33913094 33913394 -248280270 - AluSp SINE Alu -12 301 1 2384 68 0 0 chr1 33913807 33914103 -248279561 - AluY SINE Alu -15 296 1 1130 150 173 41 chr1 33914191 33914457 -248279207 - AluJo SINE Alu 0 302 2 2060 109 0 16 chr1 33914492 33914795 -248278869 - AluSx SINE Alu -14 298 1 2052 85 39 0 chr1 33914809 33915091 -248278573 - AluSg SINE Alu -17 293 1 821 129 30 8 chr1 33915559 33915691 -248277973 + AluJo SINE Alu 2 136 -176 1625 153 4 8 chr1 33915691 33915952 -248277712 + AluSx SINE Alu 21 280 -32 207 0 0 0 chr1 33915954 33915977 -248277687 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 217 289 24 0 chr1 33915984 33916067 -248277597 - MIR SINE MIR -56 206 122 817 139 134 70 chr1 33916067 33916254 -248277410 + AluJ SINE Alu 1 199 -113 2408 188 30 13 chr1 33916263 33916778 -248276886 - LTR27 LTR ERV1 -11 490 2 501 159 35 44 chr1 33916780 33916893 -248276771 + AluJ SINE Alu 198 309 -3 1510 181 0 7 chr1 33918036 33918342 -248275322 - AluJb SINE Alu 0 312 29 1533 152 76 35 chr1 33918367 33918656 -248275008 - AluJo SINE Alu 0 302 2 216 0 0 0 chr1 33918659 33918683 -248274981 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1755 120 11 33 chr1 33918685 33918833 -248274831 - AluSx SINE Alu -32 280 130 1859 108 52 3 chr1 33918833 33919119 -248274545 - AluSx SINE Alu -12 300 1 2137 92 17 0 chr1 33919119 33919414 -248274250 - AluSc SINE Alu -9 300 1 1755 120 11 33 chr1 33919414 33919538 -248274126 - AluSx SINE Alu -180 132 13 314 309 92 0 chr1 33919564 33919716 -248273948 + L1M4c LINE L1 2270 2435 -3949 1184 112 6 0 chr1 33919822 33919992 -248273672 - AluY SINE Alu -126 185 15 763 197 0 0 chr1 33920008 33920140 -248273524 - FLAM_C SINE Alu 0 133 2 439 148 111 74 chr1 33920142 33920250 -248273414 - AluJo SINE Alu -167 145 34 798 134 8 30 chr1 33920367 33920501 -248273163 - FLAM_C SINE Alu -1 132 2 2073 127 0 0 chr1 33920538 33920872 -248272792 + AluSx SINE Alu 1 312 0 338 223 132 8 chr1 33920873 33920994 -248272670 + L1M4c LINE L1 2699 2834 -3548 1495 185 45 0 chr1 33921006 33921293 -248272371 + AluJo SINE Alu 9 308 -4 2258 82 13 0 chr1 33921295 33921600 -248272064 + AluY SINE Alu 1 309 -2 253 257 72 57 chr1 33921626 33921678 -248271986 + L1M4c LINE L1 3095 3145 -3237 2232 91 3 0 chr1 33921678 33921975 -248271689 + AluSx SINE Alu 1 298 -14 253 257 72 57 chr1 33921975 33922187 -248271477 + L1M4c LINE L1 3145 3363 -3019 508 148 0 34 chr1 33922430 33922518 -248271146 + AluJ/FLAM SINE Alu 2 86 -226 518 224 43 0 chr1 33922518 33922634 -248271030 - AluSg/x SINE Alu -109 203 83 502 161 21 21 chr1 33922638 33922773 -248270891 - AluJb SINE Alu 0 325 191 468 51 0 0 chr1 33922791 33922850 -248270814 + (TA)n Simple_repeat Simple_repeat 1 59 0 2010 139 3 3 chr1 33922853 33923163 -248270501 - AluSg SINE Alu 0 310 1 681 223 0 0 chr1 33923298 33923437 -248270227 + AluJb SINE Alu 137 275 -37 2089 92 0 24 chr1 33923449 33923742 -248269922 - AluSx SINE Alu -12 300 15 24 32 0 0 chr1 33923742 33923773 -248269891 + AT_rich Low_complexity Low_complexity 1 31 0 451 299 48 74 chr1 33923773 33923877 -248269787 + L1M4c LINE L1 4312 4417 -1965 1840 144 0 33 chr1 33923877 33924183 -248269481 + AluSx SINE Alu 1 296 -16 1984 129 0 0 chr1 33924191 33924471 -248269193 + AluSx SINE Alu 1 280 -32 189 0 0 0 chr1 33924472 33924493 -248269171 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 451 299 48 74 chr1 33924493 33924688 -248268976 + L1M4c LINE L1 4423 4614 -1768 775 185 0 0 chr1 33924691 33924821 -248268843 + AluJ SINE Alu 2 131 -181 2003 87 27 40 chr1 33924824 33925122 -248268542 + AluSq SINE Alu 1 294 -19 774 221 7 13 chr1 33925142 33925296 -248268368 + AluJ SINE Alu 121 273 -39 773 170 0 21 chr1 33925394 33925535 -248268129 + FLAM_C SINE Alu 2 139 -4 2047 105 0 23 chr1 33925701 33926005 -248267659 + AluY SINE Alu 1 297 -14 353 335 70 15 chr1 33926048 33926320 -248267344 + L1M4c LINE L1 4976 5262 -1120 1110 115 53 43 chr1 33926346 33926555 -248267109 - Tigger7 DNA MER2_type -2 2489 2279 971 141 184 5 chr1 33926546 33926752 -248266912 + MER49 LTR ERV1 6 248 -675 * 916 106 8 0 chr1 33926758 33926890 -248266774 + AluSq/x SINE Alu 1 133 -179 3408 162 19 64 chr1 33926896 33926983 -248266681 + MER49 LTR ERV1 244 333 -590 2136 125 3 0 chr1 33926983 33927294 -248266370 - AluSx SINE Alu 0 312 1 3408 162 19 64 chr1 33927294 33927694 -248265970 + MER49 LTR ERV1 333 694 -229 2396 64 0 0 chr1 33927694 33927990 -248265674 + AluY SINE Alu 1 296 -15 3408 162 19 64 chr1 33927990 33928188 -248265476 + MER49 LTR ERV1 694 899 -24 1706 147 3 103 chr1 33928195 33928333 -248265331 + AluJo SINE Alu 1 91 -211 1980 139 3 16 chr1 33928333 33928650 -248265014 + AluSq SINE Alu 1 313 0 1706 147 3 103 chr1 33928650 33928831 -248264833 + AluJo SINE Alu 90 288 -14 811 297 89 32 chr1 33928905 33929309 -248264355 - L2 LINE L2 -423 2891 2465 2029 123 20 0 chr1 33929309 33929611 -248264053 + AluSx SINE Alu 1 308 -4 406 219 89 32 chr1 33929691 33929814 -248263850 + MER97a DNA MER1_type? 48 177 -717 2147 106 7 0 chr1 33929814 33930115 -248263549 + AluSp SINE Alu 1 303 -10 1992 127 14 0 chr1 33930224 33930516 -248263148 + AluSg SINE Alu 1 296 -14 361 273 36 55 chr1 33930674 33930784 -248262880 - L2 LINE L2 -995 2319 2212 1289 206 0 4 chr1 33930804 33931057 -248262607 - AluJb SINE Alu -2 310 59 2109 120 0 0 chr1 33931091 33931399 -248262265 - AluSg SINE Alu -2 308 1 413 291 69 81 chr1 33931489 33931672 -248261992 + L2 LINE L2 2215 2396 -918 1941 136 0 0 chr1 33931672 33931981 -248261683 - AluSx SINE Alu 0 309 1 413 291 69 81 chr1 33931981 33932115 -248261549 + L2 LINE L2 2396 2530 -784 345 215 0 0 chr1 33932140 33932205 -248261459 + MIR SINE MIR 173 237 -25 2389 62 0 20 chr1 33932302 33932608 -248261056 + AluSg SINE Alu 2 301 -9 24 53 0 0 chr1 33932984 33933022 -248260642 + AT_rich Low_complexity Low_complexity 1 38 0 1840 159 0 0 chr1 33933027 33933322 -248260342 + AluSx SINE Alu 6 300 -12 1775 133 65 0 chr1 33933442 33933721 -248259943 + AluSg SINE Alu 7 303 -7 3617 170 19 30 chr1 33933790 33933815 -248259849 - L1MB3 LINE L1 -1 6182 6158 1971 152 0 0 chr1 33933815 33934125 -248259539 + AluSx SINE Alu 1 310 -2 3617 170 19 30 chr1 33934125 33934136 -248259528 - L1MB3 LINE L1 -25 6158 6148 1478 170 31 50 chr1 33934136 33934256 -248259408 + AluJo SINE Alu 1 122 -190 207 0 0 0 chr1 33934256 33934279 -248259385 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1478 170 31 50 chr1 33934279 33934324 -248259340 + AluJo SINE Alu 122 166 -146 1984 128 3 13 chr1 33934324 33934637 -248259027 - AluSx SINE Alu -2 310 1 1478 170 31 50 chr1 33934637 33934788 -248258876 + AluJo SINE Alu 166 312 0 3617 170 19 30 chr1 33934788 33935327 -248258337 - L1MB3 LINE L1 -35 6148 5613 2321 70 0 3 chr1 33935327 33935628 -248258036 - AluY SINE Alu -11 300 1 3617 170 19 30 chr1 33935628 33935793 -248257871 - L1MB3 LINE L1 -570 5613 5448 1348 209 7 20 chr1 33935903 33936200 -248257464 - AluJo SINE Alu -15 297 5 787 169 0 0 chr1 33936272 33936390 -248257274 + FLAM_C SINE Alu 2 119 -24 1356 174 3 73 chr1 33936404 33936721 -248256943 + AluJb SINE Alu 1 295 -17 1999 122 3 10 chr1 33937389 33937693 -248255971 - AluSg SINE Alu -8 302 1 190 302 0 16 chr1 33937883 33937946 -248255718 - L2 LINE L2 -1 3312 3251 1363 214 7 0 chr1 33938267 33938282 -248255382 - AluJo SINE Alu -11 301 288 225 0 0 0 chr1 33938282 33938307 -248255357 + (TATG)n Simple_repeat Simple_repeat 2 26 0 1363 214 7 0 chr1 33938307 33938590 -248255074 - AluJo SINE Alu -24 288 1 2153 87 0 31 chr1 33938590 33938911 -248254753 - AluY SINE Alu 0 311 1 438 169 0 56 chr1 33938914 33939003 -248254661 - FRAM SINE Alu -18 158 75 368 229 8 76 chr1 33939103 33939170 -248254494 - AluJo SINE Alu -121 181 124 2182 100 0 0 chr1 33939170 33939469 -248254195 + AluY SINE Alu 3 301 -10 368 229 8 76 chr1 33939469 33939519 -248254145 - AluJo SINE Alu -178 124 72 660 157 46 0 chr1 33939696 33939804 -248253860 - FLAM_C SINE Alu -18 125 13 1421 102 199 38 chr1 33939966 33940003 -248253661 - AluSg1 SINE Alu 0 309 279 234 0 0 0 chr1 33940003 33940029 -248253635 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1421 102 199 38 chr1 33940029 33940257 -248253407 - AluSg1 SINE Alu -30 279 1 1984 101 7 30 chr1 33940259 33940557 -248253107 - AluSq SINE Alu -20 293 3 991 181 6 16 chr1 33940558 33940740 -248252924 - L1MC1 LINE L1 -5 6328 6149 1120 195 24 24 chr1 33940746 33940992 -248252672 + MER58B DNA MER1_type 46 291 -50 484 118 0 0 chr1 33940992 33941060 -248252604 + AluSq/x SINE Alu 37 104 -209 1128 187 29 29 chr1 33941083 33941189 -248252475 - AluJo SINE Alu -66 246 141 2357 68 3 0 chr1 33941189 33941484 -248252180 - AluSp SINE Alu -12 301 6 1128 187 29 29 chr1 33941484 33941623 -248252041 - AluJo SINE Alu -170 142 1 207 234 43 0 chr1 33941997 33942044 -248251620 + CT-rich Low_complexity Low_complexity 5 53 0 702 146 0 16 chr1 33942204 33942327 -248251337 + AluJo/FLAM SINE Alu 2 122 -190 1246 152 0 9 chr1 33942330 33942540 -248251124 - AluSg/x SINE Alu -20 290 83 308 114 0 0 chr1 33942540 33942584 -248251080 - AluY SINE Alu -52 249 206 1026 103 0 20 chr1 33942584 33942730 -248250934 - AluSg SINE Alu -167 143 1 1131 170 0 0 chr1 33942736 33942918 -248250746 + AluJb SINE Alu 127 308 -4 391 129 0 0 chr1 33943566 33943628 -248250036 + AluSp/q SINE Alu 241 302 -1 207 0 0 0 chr1 33943818 33943841 -248249823 + (A)n Simple_repeat Simple_repeat 1 23 0 290 242 71 40 chr1 33944248 33944347 -248249317 + MIR SINE MIR 117 218 -44 2094 100 0 7 chr1 33945562 33945853 -248247811 - AluSq SINE Alu -11 302 14 1041 173 0 0 chr1 33945898 33946077 -248247587 - AluJb SINE Alu 0 312 134 2044 130 3 0 chr1 33946077 33946376 -248247288 - AluSx SINE Alu -12 300 1 1599 162 22 29 chr1 33946405 33946719 -248246945 + AluJb SINE Alu 1 312 0 2247 104 0 0 chr1 33946726 33947034 -248246630 + AluSx SINE Alu 1 308 -4 2298 60 3 10 chr1 33947662 33947960 -248245704 + AluY SINE Alu 1 296 -15 1863 109 3 41 chr1 33947971 33948265 -248245399 + AluSx SINE Alu 1 283 -29 207 0 0 0 chr1 33948265 33948288 -248245376 + (TGAA)n Simple_repeat Simple_repeat 3 25 0 1215 160 0 9 chr1 33949134 33949347 -248244317 - AluSq SINE Alu -18 295 85 1556 113 4 4 chr1 33949647 33949885 -248243779 + AluSx SINE Alu 58 295 -17 1956 107 0 57 chr1 33950047 33950365 -248243299 + AluSx SINE Alu 1 300 -12 2042 71 54 0 chr1 33950411 33950691 -248242973 + AluSp SINE Alu 1 295 -18 1777 112 39 0 chr1 33950693 33950953 -248242711 + AluSg SINE Alu 32 301 -9 396 0 0 0 chr1 33950958 33951002 -248242662 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 563 309 34 39 chr1 33951564 33951694 -248241970 - MIR SINE MIR -34 228 98 1661 125 16 43 chr1 33951694 33951998 -248241666 + AluJo SINE Alu 1 296 -16 563 309 34 39 chr1 33951998 33952074 -248241590 - MIR SINE MIR -164 98 23 326 267 44 0 chr1 33952101 33952191 -248241473 + MIR SINE MIR 155 248 -14 827 185 0 0 chr1 33952239 33952385 -248241279 - FRAM SINE Alu -8 168 23 2288 95 0 0 chr1 33952485 33952791 -248240873 + AluSg SINE Alu 1 306 -4 2022 116 30 0 chr1 33952921 33953223 -248240441 + AluSx SINE Alu 1 311 -1 1963 139 7 0 chr1 33953308 33953618 -248240046 - AluSx SINE Alu 0 312 1 893 135 0 0 chr1 33953639 33953772 -248239892 - AluSq/x SINE Alu -180 133 1 2112 112 0 7 chr1 33953800 33954103 -248239561 - AluSq SINE Alu -12 301 1 1779 185 0 0 chr1 33954329 33954632 -248239032 + AluJb SINE Alu 2 304 -8 846 203 0 0 chr1 33954683 33954836 -248238828 - FRAM SINE Alu -1 175 23 2196 106 3 3 chr1 33954932 33955244 -248238420 + AluSq SINE Alu 1 312 -1 2295 108 16 0 chr1 33955244 33955550 -248238114 + AluSq SINE Alu 1 311 -2 313 120 0 0 chr1 33955550 33955600 -248238064 + (GAA)n Simple_repeat Simple_repeat 1 180 0 744 144 100 19 chr1 33955744 33955904 -248237760 - AluSc SINE Alu -18 291 119 * 1167 134 41 0 chr1 33955891 33956063 -248237601 - AluSg/x SINE Alu -9 301 123 2199 79 24 3 chr1 33956147 33956437 -248237227 - AluY SINE Alu -15 296 1 1985 110 29 0 chr1 33957415 33957687 -248235977 + AluSx SINE Alu 26 305 -7 298 114 29 29 chr1 33957710 33957780 -248235884 + CT-rich Low_complexity Low_complexity 5 74 0 548 168 26 0 chr1 33957812 33957925 -248235739 - L1MB8 LINE L1 0 6178 6063 2329 90 3 10 chr1 33957937 33958236 -248235428 - AluSp SINE Alu -16 297 1 921 176 0 21 chr1 33958236 33958424 -248235240 - L1MB8 LINE L1 -445 5739 5556 222 62 0 0 chr1 33958427 33958459 -248235205 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1897 166 0 0 chr1 33958459 33958737 -248234927 - AluJb SINE Alu -32 280 3 2225 105 0 23 chr1 33958751 33959057 -248234607 - AluSx SINE Alu -13 299 1 598 239 42 7 chr1 33959058 33959200 -248234464 - MER58A DNA MER1_type 0 148 2 341 118 0 0 chr1 33959304 33959355 -248234309 + 5S rRNA rRNA 1 51 -70 361 289 112 56 chr1 33959579 33959772 -248233892 - L2 LINE L2 -368 2946 2734 2011 131 3 77 chr1 33959772 33960109 -248233555 + AluSx SINE Alu 1 312 0 361 289 112 56 chr1 33960109 33960164 -248233500 - L2 LINE L2 -580 2734 2684 221 253 274 0 chr1 33960175 33960270 -248233394 + MIR SINE MIR 128 248 -14 1455 159 3 109 chr1 33960359 33960700 -248232964 + AluJb SINE Alu 1 312 0 2096 102 3 38 chr1 33960761 33961074 -248232590 - AluSq SINE Alu -11 302 1 731 103 0 0 chr1 33961594 33961701 -248231963 - AluSg/x SINE Alu -1 311 205 1080 104 0 0 chr1 33961764 33961899 -248231765 + AluSq/x SINE Alu 1 135 -177 2620 52 0 3 chr1 33961899 33962205 -248231459 + AluY SINE Alu 1 305 -6 1637 170 40 53 chr1 33962212 33962305 -248231359 + AluJo SINE Alu 1 94 -218 2189 117 0 0 chr1 33962305 33962608 -248231056 + AluSx SINE Alu 1 303 0 1637 170 40 53 chr1 33962608 33962813 -248230851 + AluJo SINE Alu 94 296 -16 483 254 104 36 chr1 33962841 33963120 -248230544 + HAL1 LINE L1 853 1150 -1357 351 65 0 0 chr1 33963201 33963247 -248230417 + (GGA)n Simple_repeat Simple_repeat 3 48 0 2307 106 3 3 chr1 33963285 33963596 -248230068 - AluSq SINE Alu -2 311 1 2120 107 0 48 chr1 33963598 33963908 -248229756 - AluSx SINE Alu -13 299 5 1506 192 11 11 chr1 33963924 33964210 -248229454 - AluJo SINE Alu -26 286 1 2367 101 3 0 chr1 33964223 33964530 -248229134 - AluSg SINE Alu 0 310 3 463 129 0 32 chr1 33964531 33964624 -248229040 + (TTTC)n Simple_repeat Simple_repeat 4 93 0 1402 182 100 14 chr1 33964624 33964904 -248228760 - AluJo SINE Alu 0 312 9 833 256 67 71 chr1 33964904 33965354 -248228310 + L2 LINE L2 2093 2540 -774 603 202 0 0 chr1 33965357 33965461 -248228203 + FLAM_A SINE Alu 1 104 -38 312 206 41 72 chr1 33965481 33965578 -248228086 + L1MC4 LINE L1 6612 6705 -1337 * 328 246 52 46 chr1 33965516 33965618 -248228046 - L1MC4 LINE L1 -1337 6705 6605 1981 125 36 11 chr1 33965618 33965899 -248227765 + AluSx SINE Alu 1 288 -24 328 246 52 46 chr1 33965899 33965987 -248227677 - L1MC4 LINE L1 -1437 6605 6519 2246 104 3 0 chr1 33965987 33966274 -248227390 + AluSx SINE Alu 1 288 -24 328 246 52 46 chr1 33966274 33966369 -248227295 - L1MC4 LINE L1 -1523 6519 1650 337 248 88 16 chr1 33966383 33966508 -248227156 - L2 LINE L2 -649 2665 2532 232 180 49 0 chr1 33966508 33966569 -248227095 + (TA)n Simple_repeat Simple_repeat 2 65 0 307 169 182 26 chr1 33966570 33966647 -248227017 - L1MC4 LINE L1 -1339 6703 6615 * 342 283 40 10 chr1 33966623 33966722 -248226942 + L1MC4 LINE L1 6608 6709 -1333 396 338 108 5 chr1 33966922 33967126 -248226538 + MIR SINE MIR 17 241 -21 247 256 39 26 chr1 33967450 33967528 -248226136 + MIR SINE MIR 15 93 -169 237 234 0 0 chr1 33968920 33968984 -248224680 + (CA)n Simple_repeat Simple_repeat 1 64 0 185 188 21 21 chr1 33968986 33969034 -248224630 + L2 LINE L2 3189 3236 -77 4782 160 22 19 chr1 33969049 33969453 -248224211 - L1MB7 LINE L1 -13 6171 5770 2053 157 3 10 chr1 33969453 33969465 -248224199 - AluJb SINE Alu -1 311 300 270 0 0 0 chr1 33969465 33969495 -248224169 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 2053 157 3 10 chr1 33969495 33969795 -248223869 - AluJb SINE Alu -12 300 1 4782 160 22 19 chr1 33969795 33970372 -248223292 - L1MB7 LINE L1 -414 5770 5188 2275 109 10 10 chr1 33970478 33970789 -248222875 - AluY SINE Alu 0 311 1 1063 200 0 0 chr1 33970803 33970983 -248222681 + AluJb SINE Alu 1 180 -132 438 104 0 0 chr1 33971084 33971151 -248222513 + Alu SINE Alu 240 306 -6 5147 184 31 34 chr1 33971154 33971578 -248222086 - L1MB7 LINE L1 -1062 5084 4660 2094 109 29 4 chr1 33971578 33971883 -248221781 - AluSx SINE Alu 0 312 1 5147 184 31 34 chr1 33971883 33972651 -248221013 - L1MB7 LINE L1 -1486 4660 3895 189 225 56 56 chr1 33972837 33972908 -248220756 - MIR SINE MIR -97 165 95 492 57 0 91 chr1 33972910 33972961 -248220703 - MADE1 DNA Mariner 0 80 39 2368 93 7 0 chr1 33972961 33973261 -248220403 + AluSx SINE Alu 1 302 -10 492 57 0 91 chr1 33973261 33973297 -248220367 - MADE1 DNA Mariner -41 39 1 1186 153 0 0 chr1 33973536 33973712 -248219952 - AluJo/FRAM SINE Alu -3 309 134 1898 177 10 3 chr1 33973713 33974013 -248219651 - AluJb SINE Alu -10 302 1 2186 111 3 0 chr1 33974145 33974456 -248219208 - AluSq SINE Alu 0 313 1 295 231 16 83 chr1 33974567 33974688 -248218976 - MIR SINE MIR -66 196 84 540 250 157 0 chr1 33975245 33975417 -248218247 - MIR SINE MIR -12 250 52 388 277 45 0 chr1 33975576 33975688 -248217976 + MIR SINE MIR 26 142 -120 836 220 8 106 chr1 33976140 33976395 -248217269 - MIR SINE MIR -29 233 4 1825 166 0 3 chr1 33976528 33976811 -248216853 + AluJb SINE Alu 14 295 -17 1922 182 0 3 chr1 33976813 33977126 -248216538 + AluJb SINE Alu 1 312 0 26 0 0 0 chr1 33977126 33977152 -248216512 + AT_rich Low_complexity Low_complexity 1 26 0 202 0 59 29 chr1 33977278 33977312 -248216352 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1628 151 0 0 chr1 33977442 33977697 -248215967 + AluSg SINE Alu 52 306 0 1140 114 57 0 chr1 33977697 33977855 -248215809 + AluSq SINE Alu 131 297 -16 509 283 146 5 chr1 33977876 33978088 -248215576 - MIR SINE MIR -13 249 8 469 278 9 0 chr1 33978895 33979003 -248214661 - MER81 DNA DNA -4 110 2 2298 112 0 0 chr1 33979112 33979408 -248214256 + AluSx SINE Alu 1 296 -16 2209 96 30 0 chr1 33979703 33980004 -248213660 - AluSx SINE Alu -2 310 1 2482 88 0 0 chr1 33980004 33980299 -248213365 - AluSc SINE Alu -14 295 1 2344 86 3 13 chr1 33980302 33980604 -248213060 - AluY SINE Alu -12 299 1 313 225 109 4 chr1 33981214 33981335 -248212329 + MIR3 SINE MIR 12 156 -52 2451 63 0 10 chr1 33981335 33981635 -248212029 + AluY SINE Alu 1 297 -14 203 339 0 0 chr1 33981812 33981871 -248211793 + L2 LINE L2 3153 3211 -61 376 88 0 10 chr1 33981874 33981944 -248211720 - AluSg SINE Alu -219 81 29 1567 89 20 0 chr1 33981949 33982151 -248211513 + AluSg/x SINE Alu 85 290 -19 1949 138 7 16 chr1 33982233 33982537 -248211127 + AluJb SINE Alu 1 301 -11 585 198 0 0 chr1 33982879 33983005 -248210659 + (TG)n Simple_repeat Simple_repeat 2 127 0 322 259 152 0 chr1 33983106 33983218 -248210446 + L2 LINE L2 3181 3309 -4 313 213 43 11 chr1 33983382 33983476 -248210188 + MIR3 SINE MIR 90 186 -22 503 194 31 0 chr1 33983684 33983782 -248209882 - MIR SINE MIR -65 143 43 439 348 6 6 chr1 33984817 33984978 -248208686 - L2 LINE L2 -24 3289 3129 1035 140 30 6 chr1 33984984 33985148 -248208516 + FRAM SINE Alu 6 173 -3 2324 114 0 0 chr1 33985151 33985450 -248208214 + AluSx SINE Alu 3 301 -11 1125 76 0 0 chr1 33985450 33985581 -248208083 + AluSg SINE Alu 1 131 -179 2582 77 0 0 chr1 33985585 33985896 -248207768 + AluY SINE Alu 1 311 0 783 176 0 0 chr1 33985936 33986067 -248207597 - FLAM_C SINE Alu 0 133 3 1976 134 0 10 chr1 33986099 33986397 -248207267 + AluSx SINE Alu 1 295 -17 288 250 57 73 chr1 33986494 33986618 -248207046 + L2 LINE L2 3183 3304 -9 1745 195 3 0 chr1 33986877 33987184 -248206480 + AluJo SINE Alu 1 308 -4 378 265 143 31 chr1 33987319 33987521 -248206143 - MIR SINE MIR -14 248 29 189 0 0 0 chr1 33987531 33987552 -248206112 + (A)n Simple_repeat Simple_repeat 1 21 0 2262 121 0 0 chr1 33987646 33987944 -248205720 - AluSx SINE Alu -14 298 1 462 316 19 0 chr1 33988236 33988394 -248205270 - MIR3 SINE MIR -13 195 35 350 164 27 0 chr1 33988457 33988530 -248205134 + MIR SINE MIR 67 141 -67 184 372 0 0 chr1 33989009 33989087 -248204577 + MIR SINE MIR 58 135 -73 754 208 84 25 chr1 33989366 33989537 -248204127 + MIR SINE MIR 44 230 -32 1991 148 3 26 chr1 33989537 33989847 -248203817 - AluJo SINE Alu -9 303 1 754 208 84 25 chr1 33989847 33989877 -248203787 + MIR SINE MIR 230 257 -5 1739 241 151 24 chr1 33989992 33990569 -248203095 + MER21B LTR ERV1 102 751 -112 304 203 165 0 chr1 33991451 33991530 -248202134 + MIR SINE MIR 171 262 0 2187 135 0 0 chr1 33991860 33992164 -248201500 + AluJb SINE Alu 2 305 -7 2281 97 3 7 chr1 33992307 33992607 -248201057 - AluSq SINE Alu -14 299 1 783 156 39 84 chr1 33992646 33992692 -248200972 + MER45A DNA AcHobo 8 55 -1526 2133 138 3 13 chr1 33992692 33992867 -248200797 - AluSx SINE Alu -4 308 136 2111 125 20 3 chr1 33992867 33993170 -248200494 - AluSc SINE Alu -1 308 1 2133 138 3 13 chr1 33993170 33993305 -248200359 - AluSx SINE Alu -176 136 1 783 156 39 84 chr1 33993305 33993359 -248200305 + MER45A DNA AcHobo 55 110 -1471 1939 125 24 20 chr1 33993359 33993656 -248200008 - AluSp SINE Alu -15 298 1 783 156 39 84 chr1 33993656 33993733 -248199931 + MER45A DNA AcHobo 110 178 0 218 286 12 48 chr1 33993776 33993860 -248199804 - MIR SINE MIR -179 83 3 1788 137 8 0 chr1 33994071 33994327 -248199337 - AluSq SINE Alu -6 307 50 340 173 11 11 chr1 33994367 33994444 -248199220 - Alu SINE Alu -253 50 6 488 211 78 28 chr1 33994466 33994608 -248199056 + L2 LINE L2 3156 3304 -9 639 264 53 19 chr1 33995189 33995397 -248198267 - MIR SINE MIR -35 227 13 277 224 0 51 chr1 33995400 33995498 -248198166 + C-rich Low_complexity Low_complexity 4 96 0 31 44 0 0 chr1 33995779 33995824 -248197840 + GC_rich Low_complexity Low_complexity 1 45 0 951 273 81 61 chr1 33996677 33997087 -248196577 - MLT1K LTR MaLR -100 488 71 2150 133 0 16 chr1 33997095 33997411 -248196253 + AluSx SINE Alu 1 311 -1 594 212 180 37 chr1 33997413 33997630 -248196034 - MLT1H LTR MaLR -57 492 245 1561 121 5 5 chr1 33997673 33997897 -248195767 - AluSg/x SINE Alu -4 308 85 634 247 70 0 chr1 33998901 33999087 -248194577 - MIR SINE MIR -12 250 52 380 129 0 0 chr1 34000252 34000314 -248193350 + Alu SINE Alu 241 302 0 2429 91 3 0 chr1 34000334 34000631 -248193033 - AluSp SINE Alu -15 298 1 821 173 0 0 chr1 34000633 34000766 -248192898 - AluJo/FLAM SINE Alu -169 133 1 260 269 0 0 chr1 34000802 34000869 -248192795 - L2 LINE L2 -49 3223 3157 341 260 47 16 chr1 34000880 34001007 -248192657 - MER5A DNA MER1_type -3 186 56 260 285 57 41 chr1 34000907 34001030 -248192634 + MER5B DNA MER1_type 31 155 -23 * 281 307 83 16 chr1 34001074 34001218 -248192446 + MIR SINE MIR 30 182 -61 869 292 158 3 chr1 34001642 34001991 -248191673 + L3 LINE CR1 857 1259 -318 696 279 10 10 chr1 34002013 34002210 -248191454 + MIR SINE MIR 18 214 -48 266 208 52 39 chr1 34002300 34002377 -248191287 - MIR3 SINE MIR -48 160 83 2440 93 6 0 chr1 34002964 34003275 -248190389 + AluSp SINE Alu 1 313 0 337 263 147 39 chr1 34003388 34003544 -248190120 + MIR SINE MIR 12 184 -78 1005 171 0 0 chr1 34003561 34003719 -248189945 + AluJb SINE Alu 140 297 -15 180 0 0 0 chr1 34003719 34003739 -248189925 + (GGGAA)n Simple_repeat Simple_repeat 2 21 0 265 257 107 71 chr1 34003795 34003935 -248189729 - MIR SINE MIR -35 227 83 368 284 60 0 chr1 34005421 34005537 -248188127 + MIR3 SINE MIR 13 135 -73 336 241 69 26 chr1 34005577 34005713 -248187951 - MIR SINE MIR -63 145 48 1689 136 114 0 chr1 34007074 34007347 -248186317 + AluSx SINE Alu 1 304 -8 180 0 0 0 chr1 34007422 34007442 -248186222 + (A)n Simple_repeat Simple_repeat 1 20 0 1659 174 6 42 chr1 34007847 34008158 -248185506 + AluJo SINE Alu 1 300 -12 1261 159 0 5 chr1 34008236 34008402 -248185262 - AluSg/x SINE Alu -28 282 116 222 37 0 0 chr1 34008402 34008429 -248185235 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1261 159 0 5 chr1 34008429 34008463 -248185201 - AluSg/x SINE Alu -194 116 83 978 132 0 0 chr1 34008468 34008597 -248185067 - AluSq/x SINE Alu -184 129 1 6574 72 33 43 chr1 34009050 34010013 -248183651 - SVA Other Other 0 1386 433 1859 124 29 14 chr1 34010026 34010372 -248183292 - SVA Other Other -592 794 444 308 200 50 38 chr1 34011593 34011673 -248181991 + MIR SINE MIR 64 144 -64 187 179 51 0 chr1 34011713 34011752 -248181912 + L2 LINE L2 3192 3232 -81 2113 126 14 0 chr1 34011942 34012235 -248181429 + AluSx SINE Alu 1 297 -15 388 165 39 48 chr1 34012315 34012418 -248181246 - MIR SINE MIR -1 261 160 1793 171 13 3 chr1 34012467 34012766 -248180898 - AluJo SINE Alu -10 302 1 645 248 58 50 chr1 34013503 34013761 -248179903 + MIR SINE MIR 3 262 0 436 285 44 32 chr1 34013878 34014036 -248179628 + MIR3 SINE MIR 24 183 -25 838 169 14 7 chr1 34014076 34014218 -248179446 - AluJo/FRAM SINE Alu -3 309 167 521 195 0 0 chr1 34014218 34014305 -248179359 - FRAM/FAM SINE Alu -90 86 1 218 158 0 0 chr1 34014610 34014648 -248179016 - MIR SINE MIR -43 219 182 478 266 33 94 chr1 34014649 34014924 -248178740 - MIR SINE MIR -3 259 2 191 162 27 0 chr1 34014962 34014999 -248178665 + MIR SINE MIR 117 154 -108 349 229 140 21 chr1 34015074 34015242 -248178422 + MIR SINE MIR 67 262 0 191 389 0 0 chr1 34015816 34015906 -248177758 + MIR SINE MIR 77 166 -96 199 298 32 23 chr1 34016155 34016292 -248177372 - MIR SINE MIR -14 248 31 1836 106 0 4 chr1 34016488 34016723 -248176941 + AluSq SINE Alu 1 234 -79 359 255 10 20 chr1 34016783 34016885 -248176779 - MIR SINE MIR -78 184 84 22 35 0 0 chr1 34017015 34017044 -248176620 + AT_rich Low_complexity Low_complexity 1 29 0 1582 157 51 20 chr1 34017149 34017265 -248176399 + AluJo SINE Alu 1 112 -200 432 0 0 0 chr1 34017265 34017313 -248176351 + (TC)n Simple_repeat Simple_repeat 2 49 0 261 0 0 0 chr1 34017312 34017341 -248176323 + (TA)n Simple_repeat Simple_repeat 2 30 0 * 1582 157 51 20 chr1 34017313 34017347 -248176317 + AluJo SINE Alu 112 143 -169 2424 104 3 0 chr1 34017347 34017656 -248176008 + AluSp SINE Alu 1 310 -3 1582 157 51 20 chr1 34017656 34017825 -248175839 + AluJo SINE Alu 143 302 -10 1716 93 86 91 chr1 34017965 34018001 -248175663 + L1MA3 LINE L1 5922 5957 -348 2410 61 0 0 chr1 34018001 34018323 -248175341 + AluY SINE Alu 2 323 0 1716 93 86 91 chr1 34018323 34018356 -248175308 + L1MA3 LINE L1 5957 5989 -316 823 141 0 15 chr1 34018356 34018491 -248175173 + FLAM_C SINE Alu 1 133 0 1716 93 86 91 chr1 34018491 34018650 -248175014 + L1MA3 LINE L1 5989 6152 -153 2475 86 0 3 chr1 34018650 34018953 -248174711 + AluSq SINE Alu 6 307 -6 1716 93 86 91 chr1 34018953 34019107 -248174557 + L1MA3 LINE L1 6152 6305 0 615 278 32 16 chr1 34019419 34019606 -248174058 + MIR SINE MIR 20 209 -53 430 254 106 0 chr1 34019751 34019893 -248173771 + MIR SINE MIR 81 237 -25 313 211 40 0 chr1 34019917 34019993 -248173671 + MIR3 SINE MIR 109 187 -21 207 0 0 0 chr1 34020184 34020207 -248173457 + (TCTG)n Simple_repeat Simple_repeat 1 23 0 905 169 26 53 chr1 34020233 34020422 -248173242 + AluJb SINE Alu 85 268 -44 239 320 13 0 chr1 34020627 34020705 -248172959 - L2 LINE L2 -8 3305 3227 226 280 140 10 chr1 34020714 34020814 -248172850 + MIR SINE MIR 33 145 -63 1468 189 0 8 chr1 34020933 34021192 -248172472 + AluJb SINE Alu 1 257 -55 265 264 0 44 chr1 34022139 34022230 -248171434 + MIR SINE MIR 57 143 -65 439 293 208 0 chr1 34022260 34022472 -248171192 - MIR SINE MIR -2 260 5 495 209 20 40 chr1 34022474 34022622 -248171042 - MIR SINE MIR -54 208 64 2109 134 0 3 chr1 34022704 34022996 -248170668 + AluSx SINE Alu 1 291 -21 2331 87 10 10 chr1 34023005 34023305 -248170359 + AluSx SINE Alu 1 300 -12 191 159 23 23 chr1 34023532 34023576 -248170088 - L2 LINE L2 -8 3305 3262 376 276 112 40 chr1 34023598 34023750 -248169914 + MIR SINE MIR 49 211 -51 366 246 282 5 chr1 34023723 34023918 -248169746 - MIR SINE MIR 0 262 14 * 1965 138 27 3 chr1 34024206 34024503 -248169161 + AluSx SINE Alu 6 309 -3 2391 114 0 0 chr1 34024503 34024811 -248168853 + AluSc SINE Alu 1 308 -1 287 248 138 9 chr1 34025077 34025186 -248168478 + MIR SINE MIR 14 136 -126 332 200 0 0 chr1 34025362 34025422 -248168242 + Tigger5 DNA MER2_type 2264 2323 0 248 267 158 17 chr1 34025749 34025869 -248167795 + L3 LINE CR1 1430 1566 -11 2399 56 0 14 chr1 34026085 34026394 -248167270 + AluY SINE Alu 1 305 0 333 92 10 0 chr1 34026433 34026502 -248167162 - Alu SINE Alu 0 301 249 2334 111 3 0 chr1 34026602 34026908 -248166756 - AluSx SINE Alu -5 307 1 603 216 67 58 chr1 34027034 34027242 -248166422 - MIR SINE MIR -33 229 20 277 311 117 62 chr1 34027756 34027827 -248165837 + L2 LINE L2 2643 2709 -563 2216 106 7 0 chr1 34027827 34028129 -248165535 + AluSx SINE Alu 2 305 0 277 311 117 62 chr1 34028129 34028206 -248165458 + L2 LINE L2 2709 2780 -492 952 146 5 102 chr1 34028206 34028269 -248165395 - MER5A DNA MER1_type -2 187 119 2492 60 0 0 chr1 34028269 34028554 -248165110 + AluSc SINE Alu 1 285 -24 952 146 5 102 chr1 34028554 34028696 -248164968 - MER5A DNA MER1_type -70 119 2 277 311 117 62 chr1 34028696 34029139 -248164525 + L2 LINE L2 2780 3271 -1 2324 109 7 0 chr1 34029227 34029529 -248164135 - AluSx SINE Alu -8 304 1 242 256 151 0 chr1 34029529 34029615 -248164049 - L2 LINE L2 -23 3290 3192 2434 77 0 29 chr1 34029686 34029998 -248163666 + AluSp SINE Alu 2 304 -9 386 308 76 27 chr1 34030060 34030245 -248163419 - MIR SINE MIR -35 227 34 1320 258 142 57 chr1 34030394 34030987 -248162677 + MER115 DNA AcHobo 51 693 0 243 228 167 18 chr1 34031311 34031425 -248162239 - MIR SINE MIR -14 248 118 574 286 15 44 chr1 34031432 34031638 -248162026 + MIR SINE MIR 57 256 -6 2178 103 0 7 chr1 34031640 34031985 -248161679 + AluSc SINE Alu 1 343 0 264 312 11 0 chr1 34032095 34032188 -248161476 - MIR3 SINE MIR -4 204 111 1942 167 0 3 chr1 34032536 34032830 -248160834 + AluJo SINE Alu 1 293 -19 2200 118 0 3 chr1 34032836 34033141 -248160523 + AluSx SINE Alu 2 305 -7 948 98 0 0 chr1 34033141 34033263 -248160401 + AluSq SINE Alu 134 255 -58 189 0 0 0 chr1 34033269 34033290 -248160374 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 1123 165 0 98 chr1 34033406 34033456 -248160208 - LTR8 LTR ERV1 -462 229 176 2390 84 0 0 chr1 34033456 34033752 -248159912 + AluY SINE Alu 1 296 -15 1123 165 0 98 chr1 34033752 34033955 -248159709 - LTR8 LTR ERV1 -515 176 1 267 228 109 11 chr1 34034225 34034317 -248159347 + MIR3 SINE MIR 56 156 -52 2005 152 0 10 chr1 34034417 34034727 -248158937 + AluSx SINE Alu 1 307 -5 727 169 0 8 chr1 34034738 34034862 -248158802 + FLAM_A SINE Alu 2 124 -9 183 253 67 40 chr1 34034896 34034971 -248158693 - MER5A DNA MER1_type -49 140 64 * 418 220 114 38 chr1 34034968 34035100 -248158564 - L2 LINE L2 -4 3309 3168 1927 171 7 0 chr1 34035102 34035412 -248158252 + AluJo SINE Alu 1 312 0 434 238 32 40 chr1 34035439 34035565 -248158099 - L2 LINE L2 -12 3301 3177 585 292 22 11 chr1 34035577 34035762 -248157902 - MIR SINE MIR -75 187 1 856 140 33 7 chr1 34035860 34036010 -248157654 - MLT1F1 LTR MaLR -4 563 410 860 192 0 19 chr1 34036018 34036174 -248157490 + FRAM SINE Alu 1 153 -13 1082 91 0 0 chr1 34036200 34036332 -248157332 + AluSq/x SINE Alu 5 136 -177 1969 120 16 54 chr1 34036332 34036649 -248157015 + AluSg SINE Alu 1 305 -5 1767 129 4 12 chr1 34036657 34036905 -248156759 + AluSq SINE Alu 1 246 -67 315 132 53 53 chr1 34037538 34037602 -248156062 + CT-rich Low_complexity Low_complexity 2 68 -47 2427 68 20 0 chr1 34037602 34037895 -248155769 - AluSx SINE Alu -13 299 1 315 132 53 53 chr1 34037895 34037944 -248155720 + CT-rich Low_complexity Low_complexity 67 115 0 2283 116 3 0 chr1 34037956 34038259 -248155405 - AluSx SINE Alu -8 304 1 264 140 2 0 chr1 34038509 34038560 -248155104 - MIR SINE MIR -56 152 100 1466 182 87 14 chr1 34038565 34038841 -248154823 + AluJb SINE Alu 1 300 -12 423 0 0 0 chr1 34038841 34038888 -248154776 + (CA)n Simple_repeat Simple_repeat 2 48 0 2393 93 3 0 chr1 34039157 34039458 -248154206 - AluSq SINE Alu -9 304 3 2235 110 0 7 chr1 34039460 34039751 -248153913 - AluSg SINE Alu -19 291 3 1615 176 0 91 chr1 34039753 34040082 -248153582 - AluJb SINE Alu -13 299 1 239 62 0 0 chr1 34040082 34040114 -248153550 - Alu SINE Alu -159 143 112 432 276 112 12 chr1 34040325 34040495 -248153169 + MIR SINE MIR 20 206 -56 278 122 0 0 chr1 34040540 34040589 -248153075 - Alu SINE Alu -2 300 252 465 82 137 0 chr1 34040589 34040662 -248153002 + AluSc SINE Alu 216 298 -11 226 276 63 55 chr1 34040768 34040895 -248152769 + MIR SINE MIR 33 160 -102 1873 173 0 37 chr1 34041556 34041879 -248151785 - AluJo SINE Alu -1 311 1 2298 79 7 0 chr1 34042015 34042321 -248151343 + AluY SINE Alu 1 308 0 818 124 51 56 chr1 34042365 34042543 -248151121 - AluJo SINE Alu -114 198 22 228 125 0 50 chr1 34042571 34042611 -248151053 + LTR67 LTR ERVL 520 557 0 2259 93 0 10 chr1 34042773 34043064 -248150600 - AluSg SINE Alu -22 288 1 843 72 90 0 chr1 34043185 34043296 -248150368 - AluSq/x SINE Alu -191 121 1 939 175 6 0 chr1 34043296 34043479 -248150185 - LTR54 LTR ERV1 -6 504 321 704 190 7 0 chr1 34043490 34043627 -248150037 + AluJb SINE Alu 13 150 -162 693 106 0 35 chr1 34043633 34043728 -248149936 + AluSq/x SINE Alu 42 134 -179 2397 90 3 0 chr1 34043728 34044028 -248149636 + AluY SINE Alu 1 301 -10 693 106 0 35 chr1 34044028 34044045 -248149619 + AluSq/x SINE Alu 134 150 -163 2075 114 7 23 chr1 34044066 34044365 -248149299 + AluSx SINE Alu 1 294 -18 1950 106 103 7 chr1 34044365 34044647 -248149017 + AluSx SINE Alu 1 309 -3 923 138 0 83 chr1 34044647 34044828 -248148836 + AluJo/FRAM SINE Alu 137 302 -10 2103 133 0 13 chr1 34044828 34045128 -248148536 + AluSx SINE Alu 1 296 -16 1016 154 89 117 chr1 34045143 34045468 -248148196 - LTR54 LTR ERV1 -193 317 2 366 23 0 0 chr1 34046224 34046267 -248147397 + (CA)n Simple_repeat Simple_repeat 2 44 0 429 230 158 0 chr1 34046279 34046431 -248147233 + L2 LINE L2 2562 2737 -577 308 285 152 7 chr1 34046506 34046657 -248147007 + L2 LINE L2 2999 3171 -142 1653 175 0 70 chr1 34047114 34047202 -248146462 + AluJb SINE Alu 5 98 -214 2363 80 0 16 chr1 34047202 34047513 -248146151 + AluSx SINE Alu 1 306 -6 1653 175 0 70 chr1 34047513 34047574 -248146090 + AluJb SINE Alu 98 162 -150 2140 134 0 10 chr1 34047574 34047873 -248145791 + AluSx SINE Alu 1 296 -16 1653 175 0 70 chr1 34047873 34048037 -248145627 + AluJb SINE Alu 162 297 -15 432 0 0 0 chr1 34048117 34048165 -248145499 + (CA)n Simple_repeat Simple_repeat 1 48 0 788 203 94 10 chr1 34048651 34048843 -248144821 + MER63A DNA MER1_type 1 208 -2 483 324 68 10 chr1 34048978 34049185 -248144479 + MIR SINE MIR 2 220 -42 2201 100 3 32 chr1 34049264 34049573 -248144091 + AluSq SINE Alu 1 300 -13 1920 165 3 13 chr1 34049582 34049891 -248143773 + AluSx SINE Alu 1 306 -6 491 291 30 1 chr1 34049952 34050131 -248143533 + L1ME2 LINE L1 5985 6164 0 1869 140 55 3 chr1 34050515 34050808 -248142856 + AluJo SINE Alu 5 312 0 2178 98 3 65 chr1 34051407 34051732 -248141932 + AluSg SINE Alu 1 305 -5 1846 164 6 25 chr1 34051760 34052078 -248141586 - AluJo SINE Alu 0 312 1 2509 65 7 0 chr1 34052197 34052503 -248141161 - AluY SINE Alu -3 308 1 2034 159 10 0 chr1 34052507 34052809 -248140855 - AluJb SINE Alu -7 305 1 2352 99 6 10 chr1 34052888 34053200 -248140464 + AluSx SINE Alu 1 311 -1 2267 106 17 0 chr1 34053226 34053528 -248140136 + AluSx SINE Alu 1 307 -5 2251 102 3 0 chr1 34054319 34054626 -248139038 + AluSq SINE Alu 1 308 0 22 0 0 0 chr1 34054712 34054734 -248138930 + AT_rich Low_complexity Low_complexity 1 22 0 2250 109 3 0 chr1 34054736 34055046 -248138618 + AluSq SINE Alu 1 311 0 306 264 90 21 chr1 34055070 34055310 -248138354 + L1MEd LINE L1 1023 1328 -4866 267 323 54 0 chr1 34055682 34055775 -248137889 - MIR SINE MIR -48 214 117 1961 121 0 26 chr1 34055780 34056053 -248137611 + AluSq SINE Alu 34 299 -14 1837 171 4 0 chr1 34056077 34056402 -248137262 + AluJb SINE Alu 1 326 0 1990 110 55 0 chr1 34056431 34056703 -248136961 - AluSx SINE Alu -25 287 1 180 228 205 41 chr1 34056800 34056971 -248136693 - L2 LINE L2 -240 3032 2834 2429 92 0 0 chr1 34057041 34057346 -248136318 - AluSg SINE Alu -5 305 1 202 218 73 0 chr1 34057382 34057437 -248136227 + MIR SINE MIR 204 262 0 242 172 124 183 chr1 34057477 34057663 -248136001 - MLT1K LTR MaLR 0 588 414 252 0 0 0 chr1 34057965 34057993 -248135671 + (A)n Simple_repeat Simple_repeat 1 28 0 610 269 112 13 chr1 34058134 34058398 -248135266 - HAL1 LINE L1 -1040 1467 1153 1714 196 4 0 chr1 34058398 34058701 -248134963 - AluJb SINE Alu 0 304 1 610 269 112 13 chr1 34058701 34058811 -248134853 - HAL1 LINE L1 -1354 1153 1055 180 0 0 0 chr1 34058853 34058873 -248134791 + (T)n Simple_repeat Simple_repeat 1 20 0 2051 82 8 0 chr1 34058875 34059130 -248134534 - AluSq SINE Alu -55 258 2 2276 103 0 0 chr1 34059256 34059546 -248134118 - AluSx SINE Alu -22 290 1 1705 185 0 7 chr1 34059578 34059859 -248133805 + AluSx SINE Alu 5 283 -29 2464 84 0 0 chr1 34059887 34060183 -248133481 + AluSx SINE Alu 11 306 -6 2591 60 0 0 chr1 34060183 34060482 -248133182 + AluY SINE Alu 1 299 -12 1514 147 0 9 chr1 34060481 34060712 -248132952 + AluSg/x SINE Alu 68 296 -16 * 2401 96 3 3 chr1 34060771 34061083 -248132581 + AluSp SINE Alu 1 312 -1 983 143 19 19 chr1 34061109 34061255 -248132409 + FRAM SINE Alu 1 28 -148 2387 108 0 3 chr1 34061255 34061569 -248132095 + AluSq SINE Alu 1 313 0 983 143 19 19 chr1 34061569 34061583 -248132081 + FRAM SINE Alu 27 40 0 2061 115 56 0 chr1 34061633 34061920 -248131744 + AluSx SINE Alu 1 303 -9 262 197 0 33 chr1 34062124 34062185 -248131479 - MIR SINE MIR -104 158 100 754 168 17 0 chr1 34062255 34062374 -248131290 + FRAM SINE Alu 38 158 -18 251 108 0 0 chr1 34062436 34062473 -248131191 + AluJb SINE Alu 82 118 -184 189 0 0 0 chr1 34062481 34062502 -248131162 + (TAA)n Simple_repeat Simple_repeat 2 22 0 303 303 159 7 chr1 34062504 34062516 -248131148 - MIR SINE MIR -32 230 221 483 288 0 0 chr1 34062516 34062648 -248131016 - FLAM_C SINE Alu 0 133 2 303 303 159 7 chr1 34062648 34062780 -248130884 - MIR SINE MIR -41 221 64 2396 110 0 0 chr1 34062874 34063182 -248130482 + AluSx SINE Alu 1 308 -4 2183 111 0 0 chr1 34063380 34063668 -248129996 - AluSc SINE Alu -21 288 1 2051 140 0 0 chr1 34063698 34064010 -248129654 - AluSq SINE Alu 0 312 1 900 218 45 36 chr1 34064026 34064246 -248129418 + AluJo SINE Alu 84 305 -7 609 205 22 100 chr1 34064246 34064468 -248129196 - L1MB7 LINE L1 -47 6137 5932 1988 134 29 10 chr1 34064468 34064774 -248128890 - AluSx SINE Alu 0 312 1 1758 162 14 3 chr1 34064804 34065101 -248128563 - AluJo SINE Alu -10 302 3 379 281 0 42 chr1 34065165 34065261 -248128403 - L1MC4 LINE L1 -1337 6705 6614 * 396 296 0 10 chr1 34065199 34065297 -248128367 + L1MC4 LINE L1 6607 6703 -1339 2407 65 0 7 chr1 34065312 34065604 -248128060 - AluSc SINE Alu -19 290 1 406 275 131 31 chr1 34065610 34065814 -248127850 - L1 LINE L1 -914 5232 5001 2488 54 0 3 chr1 34065814 34066112 -248127552 - AluY SINE Alu -14 297 1 406 275 131 31 chr1 34066112 34066136 -248127528 - L1 LINE L1 -1145 5001 4981 480 309 67 6 chr1 34066152 34066330 -248127334 - MIR SINE MIR -50 212 24 700 197 46 0 chr1 34068807 34068959 -248124705 - L1PB4 LINE L1 -2 6154 5996 2258 99 3 0 chr1 34069792 34070086 -248123578 - AluSg SINE Alu -13 297 3 468 284 37 9 chr1 34070265 34070433 -248123231 + MIR SINE MIR 8 183 -66 1579 157 109 0 chr1 34070478 34070752 -248122912 - AluJo SINE Alu -8 304 1 24 0 0 0 chr1 34070782 34070806 -248122858 + AT_rich Low_complexity Low_complexity 1 24 0 2079 108 56 0 chr1 34070806 34071093 -248122571 - AluSc SINE Alu -6 303 1 688 151 8 17 chr1 34071133 34071252 -248122412 - FLAM_C SINE Alu -15 118 1 2128 129 3 0 chr1 34071503 34071824 -248121840 - AluSx SINE Alu 0 322 1 189 0 0 0 chr1 34071943 34071964 -248121700 + (ATTG)n Simple_repeat Simple_repeat 2 22 0 2190 112 0 0 chr1 34071964 34072250 -248121414 - AluSx SINE Alu -26 286 1 183 156 0 0 chr1 34072301 34072333 -248121331 + (TATG)n Simple_repeat Simple_repeat 2 33 0 2319 104 3 0 chr1 34072339 34072636 -248121028 - AluSp SINE Alu -15 298 1 241 203 0 43 chr1 34072762 34072831 -248120833 + C-rich Low_complexity Low_complexity 1 66 0 189 0 0 0 chr1 34072981 34073002 -248120662 + (CCCCCG)n Simple_repeat Simple_repeat 3 23 0 345 310 47 16 chr1 34073268 34073397 -248120267 + MIR SINE MIR 57 189 -73 2439 96 0 3 chr1 34073727 34074040 -248119624 + AluSx SINE Alu 1 312 0 984 88 19 62 chr1 34074110 34074270 -248119394 - AluJb SINE Alu 0 312 160 561 206 30 0 chr1 34074294 34074425 -248119239 - L1ME LINE L1 -607 5557 5423 376 246 101 22 chr1 34074542 34074680 -248118984 + L2 LINE L2 3162 3310 -3 2304 111 0 0 chr1 34074800 34075098 -248118566 + AluSc SINE Alu 1 298 -11 712 246 188 4 chr1 34075216 34075472 -248118192 + MLT1K LTR MaLR 7 309 -279 290 271 21 125 chr1 34075540 34075650 -248118014 - L2 LINE L2 -390 2924 2804 1619 122 0 0 chr1 34075650 34075872 -248117792 - AluSg/x SINE Alu -18 294 73 290 271 21 125 chr1 34075872 34075941 -248117723 - L2 LINE L2 -510 2804 2774 1999 101 0 82 chr1 34075941 34076269 -248117395 - AluSx SINE Alu -11 301 1 290 271 21 125 chr1 34076269 34076328 -248117336 - L2 LINE L2 -540 2774 2710 1320 220 62 22 chr1 34076331 34076604 -248117060 - AluJo SINE Alu -22 290 7 2145 112 7 0 chr1 34076734 34077028 -248116636 + AluSq SINE Alu 3 298 -15 691 165 0 0 chr1 34077181 34077290 -248116374 + FRAM SINE Alu 46 154 -22 2279 100 0 0 chr1 34077432 34077722 -248115942 - AluSg1 SINE Alu -19 290 1 2358 107 3 0 chr1 34077722 34078032 -248115632 - AluSp SINE Alu -2 311 1 678 214 0 0 chr1 34078139 34078256 -248115408 + FLAM_C SINE Alu 2 118 -15 38 0 0 0 chr1 34078256 34078294 -248115370 + AT_rich Low_complexity Low_complexity 1 38 0 2424 91 0 0 chr1 34078313 34078609 -248115055 + AluSq SINE Alu 1 296 -17 2268 112 0 0 chr1 34078841 34079136 -248114528 + AluSx SINE Alu 1 295 -17 719 300 50 3 chr1 34079143 34079440 -248114224 + L1MC4a LINE L1 5605 5915 -1893 1749 191 6 28 chr1 34079490 34079809 -248113855 - AluJb SINE Alu 0 312 1 2387 82 7 0 chr1 34079818 34080121 -248113543 - AluSp SINE Alu -8 305 1 2186 107 0 10 chr1 34080194 34080485 -248113179 - AluSc SINE Alu -21 288 1 249 122 0 0 chr1 34080528 34080569 -248113095 + MER41A LTR ERV1 383 423 -131 2066 94 8 0 chr1 34080570 34080835 -248112829 - AluSg SINE Alu -9 301 35 533 225 21 0 chr1 34081198 34081340 -248112324 + LTR16A1 LTR ERVL 307 451 -6 2353 115 0 6 chr1 34081343 34081656 -248112008 + AluSq SINE Alu 1 311 -2 335 299 58 82 chr1 34081726 34082017 -248111647 - L1ME4a LINE L1 -3 6118 5835 436 314 79 56 chr1 34082027 34082092 -248111572 + L2 LINE L2 2686 2748 -566 2632 123 32 21 chr1 34082092 34082367 -248111297 + LTR23 LTR ERV1 2 272 -165 1968 155 0 25 chr1 34082367 34082543 -248111121 - AluSx SINE Alu -3 309 130 2313 101 0 0 chr1 34082543 34082849 -248110815 - AluSg SINE Alu 0 310 1 2403 89 0 3 chr1 34082853 34083155 -248110509 - AluSg SINE Alu -9 301 1 1968 155 0 25 chr1 34083155 34083290 -248110374 - AluSx SINE Alu -185 127 1 2632 123 32 21 chr1 34083290 34083445 -248110219 + LTR23 LTR ERV1 272 437 0 436 314 79 56 chr1 34083445 34083631 -248110033 + L2 LINE L2 2748 2943 -371 2433 100 3 0 chr1 34083637 34083946 -248109718 - AluSp SINE Alu -3 310 1 1234 139 0 0 chr1 34083957 34084130 -248109534 - AluSg/x SINE Alu -3 309 137 196 352 167 19 chr1 34084132 34084240 -248109424 + L2 LINE L2 2945 3068 -204 315 0 0 0 chr1 34084286 34084321 -248109343 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1278 171 110 20 chr1 34084329 34084435 -248109229 - AluJo SINE Alu -45 267 172 2234 90 4 0 chr1 34084435 34084712 -248108952 - AluSp SINE Alu -33 280 3 1278 171 110 20 chr1 34084712 34084850 -248108814 - AluJo SINE Alu -140 172 1 2012 135 7 3 chr1 34084854 34085160 -248108504 - AluSx SINE Alu 0 307 1 3090 125 14 82 chr1 34085266 34085469 -248108195 + LTR26B LTR ERV1 1 216 -315 2241 105 0 40 chr1 34085469 34085793 -248107871 + AluSq SINE Alu 1 311 -2 2520 67 0 0 chr1 34085799 34086099 -248107565 + AluY SINE Alu 1 300 -11 3090 125 14 82 chr1 34086099 34086161 -248107503 + LTR26B LTR ERV1 221 286 -245 2414 102 3 0 chr1 34086161 34086466 -248107198 + AluSp SINE Alu 1 306 -7 3090 125 14 82 chr1 34086466 34086762 -248106902 + LTR26B LTR ERV1 286 531 0 1933 167 0 0 chr1 34086783 34087065 -248106599 + AluSx SINE Alu 1 282 -30 1675 154 11 0 chr1 34087066 34087332 -248106332 - AluSp SINE Alu -44 269 1 407 313 23 0 chr1 34087388 34087516 -248106148 + L2 LINE L2 3141 3271 -1 201 39 0 0 chr1 34087625 34087651 -248106013 + (TCTA)n Simple_repeat Simple_repeat 1 26 0 2192 86 10 20 chr1 34087666 34087967 -248105697 - AluY SINE Alu -13 298 1 2283 95 0 7 chr1 34087989 34088325 -248105339 - AluSg SINE Alu 0 310 1 1988 114 18 0 chr1 34088505 34088785 -248104879 + AluSp SINE Alu 6 290 -23 853 174 8 0 chr1 34088789 34088921 -248104743 + AluJo SINE Alu 1 133 -169 993 153 0 31 chr1 34088921 34088938 -248104726 + AluJo SINE Alu 134 150 -162 3715 92 16 54 chr1 34088938 34089410 -248104254 + MER41A LTR ERV1 1 450 -104 2038 119 3 3 chr1 34089410 34089743 -248103921 + AluY SINE Alu 1 333 0 3715 92 16 54 chr1 34089743 34089845 -248103819 + MER41A LTR ERV1 450 554 0 993 153 0 31 chr1 34089845 34089990 -248103674 + AluJo SINE Alu 150 291 -21 1985 153 0 23 chr1 34089999 34090350 -248103314 - AluSx SINE Alu 0 312 1 601 171 103 0 chr1 34090351 34090468 -248103196 - AluJb SINE Alu -178 134 6 2295 115 6 6 chr1 34090488 34090801 -248102863 - AluSq SINE Alu 0 313 1 678 227 0 40 chr1 34090810 34090922 -248102742 - FAM SINE Alu -157 164 58 2528 208 92 63 chr1 34090922 34091199 -248102465 - LTR1B LTR ERV1 0 826 558 1919 176 0 3 chr1 34091199 34091501 -248102163 - AluSx SINE Alu -11 301 1 2528 208 92 63 chr1 34091501 34092026 -248101638 - LTR1B LTR ERV1 -268 558 1 678 227 0 40 chr1 34092026 34092063 -248101601 - FAM SINE Alu -263 58 21 2283 115 0 0 chr1 34092274 34092570 -248101094 + AluSx SINE Alu 1 296 -16 1322 105 0 0 chr1 34092780 34092952 -248100712 - AluSg/x SINE Alu -7 303 132 2228 99 24 0 chr1 34092952 34093245 -248100419 - AluSx SINE Alu -12 300 1 900 221 0 0 chr1 34093277 34093440 -248100224 + FRAM SINE Alu 1 163 -3 278 218 0 18 chr1 34093555 34093610 -248100054 + MLT1K LTR MaLR 192 245 -343 27 49 0 0 chr1 34093716 34093757 -248099907 + AT_rich Low_complexity Low_complexity 1 41 0 1982 147 10 0 chr1 34093758 34094050 -248099614 - AluSx SINE Alu -17 295 1 1178 266 90 26 chr1 34094052 34094547 -248099117 - L2 LINE L2 -12 3301 2795 1979 150 0 10 chr1 34094568 34094874 -248098790 - AluSx SINE Alu -9 303 1 962 151 20 0 chr1 34094874 34095020 -248098644 - FRAM SINE Alu -12 164 16 2401 96 3 3 chr1 34095046 34095358 -248098306 - AluSp SINE Alu -1 312 1 25 37 0 37 chr1 34095397 34095426 -248098238 + AT_rich Low_complexity Low_complexity 1 30 -22 1514 140 0 9 chr1 34095426 34095648 -248098016 - AluSg/x SINE Alu -25 287 68 2591 60 0 0 chr1 34095648 34095946 -248097718 - AluY SINE Alu -12 299 1 25 37 0 37 chr1 34095946 34095969 -248097695 + AT_rich Low_complexity Low_complexity 28 52 0 1440 115 0 14 chr1 34096119 34096353 -248097311 - AluSg/x SINE Alu 0 320 90 458 274 6 74 chr1 34096485 34096660 -248097004 - L2 LINE L2 -213 3059 2897 309 307 88 44 chr1 34096657 34096721 -248096943 - L3 LINE CR1 -12 1565 1505 * 840 279 28 4 chr1 34096721 34096975 -248096689 - MIR SINE MIR 0 262 3 309 307 88 44 chr1 34096975 34097047 -248096617 - L3 LINE CR1 -72 1505 1423 2226 112 0 0 chr1 34097151 34097470 -248096194 - AluSq SINE Alu 0 319 1 1012 201 53 5 chr1 34097680 34097889 -248095775 - MER20 DNA MER1_type 0 219 1 240 246 237 0 chr1 34097951 34098069 -248095595 + MIR SINE MIR 114 259 -3 1067 92 14 0 chr1 34098221 34098363 -248095301 - AluSg/x SINE Alu -14 298 155 1619 145 119 11 chr1 34098558 34098827 -248094837 - AluJb SINE Alu -12 300 3 223 314 50 6 chr1 34098835 34098994 -248094670 - L2 LINE L2 -1605 1709 1544 228 67 0 0 chr1 34099006 34099036 -248094628 + (CAGGG)n Simple_repeat Simple_repeat 4 33 0 211 167 0 30 chr1 34099036 34099047 -248094617 + GA-rich Low_complexity Low_complexity 2 12 -53 2167 88 20 14 chr1 34099047 34099344 -248094320 + AluSx SINE Alu 1 299 -13 211 167 0 30 chr1 34099344 34099398 -248094266 + GA-rich Low_complexity Low_complexity 12 65 0 2202 119 0 3 chr1 34099398 34099692 -248093972 + AluSg SINE Alu 1 293 -17 719 300 50 3 chr1 34099699 34099996 -248093668 + L1MC4a LINE L1 5605 5915 -1893 1659 202 9 25 chr1 34100046 34100363 -248093301 - AluJb SINE Alu 0 312 1 2387 82 7 0 chr1 34100372 34100675 -248092989 - AluSp SINE Alu -8 305 1 1128 428 43 0 chr1 34100748 34101024 -248092640 - AluSc SINE Alu -11 288 1 249 122 0 0 chr1 34101067 34101108 -248092556 + MER41B LTR ERV1 464 504 -131 2066 94 8 0 chr1 34101109 34101374 -248092290 - AluSg SINE Alu -9 301 35 496 239 21 0 chr1 34101737 34101879 -248091785 + LTR16A1 LTR ERVL 307 451 -6 * 1628 182 28 131 chr1 34101860 34101882 -248091782 + LTR8 LTR ERV1 214 237 -454 2319 98 0 7 chr1 34101882 34102187 -248091477 + AluSx SINE Alu 1 303 -9 1628 182 28 131 chr1 34102187 34102212 -248091452 + LTR8 LTR ERV1 237 263 -428 2111 84 0 8 chr1 34102212 34102473 -248091191 + AluSx SINE Alu 39 297 -15 1628 182 28 131 chr1 34102473 34102694 -248090970 + LTR8 LTR ERV1 263 404 -287 1599 95 153 15 chr1 34102694 34102956 -248090708 + AluSg SINE Alu 1 298 -2 1628 182 28 131 chr1 34102956 34103218 -248090446 + LTR8 LTR ERV1 404 691 0 2028 139 13 0 chr1 34103386 34103687 -248089977 - AluSx SINE Alu -7 305 1 2215 125 0 0 chr1 34103702 34103997 -248089667 - AluSg SINE Alu -15 295 1 249 331 16 48 chr1 34104137 34104261 -248089403 - MER5A DNA MER1_type -29 160 41 1594 110 0 0 chr1 34104268 34104468 -248089196 + AluSx SINE Alu 1 200 -112 443 47 47 0 chr1 34104631 34104695 -248088969 + (TTCTCC)n Simple_repeat Simple_repeat 1 67 0 823 141 0 22 chr1 34104698 34104833 -248088831 - FLAM_C SINE Alu 0 133 2 2321 110 3 3 chr1 34105008 34105317 -248088347 + AluSg SINE Alu 1 309 -1 2191 105 0 56 chr1 34105457 34105645 -248088019 - AluSp SINE Alu -6 307 143 2272 84 3 3 chr1 34105645 34105931 -248087733 - AluSg SINE Alu -24 286 1 2191 105 0 56 chr1 34105931 34106065 -248087599 - AluSp SINE Alu -170 143 3 1925 152 0 36 chr1 34106533 34106842 -248086822 - AluSx SINE Alu -14 298 1 379 255 11 11 chr1 34106911 34107005 -248086659 + MER5B DNA MER1_type 67 160 -18 535 237 183 41 chr1 34107033 34107124 -248086540 - L3 LINE CR1 -88 1489 1412 2333 112 7 0 chr1 34107124 34107429 -248086235 - AluSx SINE Alu -5 307 1 535 237 183 41 chr1 34107429 34107676 -248085988 - L3 LINE CR1 -165 1412 1040 280 326 93 17 chr1 34107673 34107845 -248085819 + L2 LINE L2 2731 2915 -399 * 2158 152 0 0 chr1 34107963 34108272 -248085392 + AluSx SINE Alu 1 309 -3 1782 168 0 11 chr1 34108517 34108803 -248084861 + AluJo SINE Alu 1 283 -29 2092 87 10 21 chr1 34108882 34109193 -248084471 - AluY SINE Alu 0 308 1 2296 92 0 7 chr1 34109215 34109551 -248084113 - AluSg SINE Alu 0 310 1 1867 156 24 0 chr1 34109560 34109849 -248083815 - AluJb SINE Alu -16 296 1 2325 98 7 0 chr1 34110151 34110447 -248083217 + AluY SINE Alu 1 298 -13 2184 135 0 0 chr1 34110460 34110757 -248082907 + AluSq SINE Alu 1 297 -16 1828 149 0 14 chr1 34110787 34111090 -248082574 + AluJb SINE Alu 11 309 0 195 214 0 24 chr1 34111229 34111271 -248082393 - MIR SINE MIR -103 159 119 1831 132 0 0 chr1 34111451 34111702 -248081962 + AluSq SINE Alu 54 304 -9 318 295 43 14 chr1 34111946 34112085 -248081579 + L1ME LINE L1 5604 5746 -375 3851 154 58 18 chr1 34112227 34112956 -248080708 + L1MB7 LINE L1 5425 6182 -2 240 250 0 0 chr1 34112978 34113026 -248080638 + MER81 DNA DNA 1 48 -66 1473 120 48 0 chr1 34113027 34113236 -248080428 + AluSx SINE Alu 1 219 -93 778 100 10 0 chr1 34113236 34113336 -248080328 + AluSc SINE Alu 92 192 -117 475 178 56 9 chr1 34113491 34113598 -248080066 + MIR SINE MIR 148 259 -3 2532 79 0 6 chr1 34113601 34113916 -248079748 - AluSp SINE Alu 0 313 1 760 141 38 113 chr1 34114356 34114462 -248079202 + MER45A DNA AcHobo 1 89 -1492 2218 109 7 0 chr1 34114462 34114756 -248078908 - AluSx SINE Alu -3 309 14 760 141 38 113 chr1 34114756 34114834 -248078830 + MER45A DNA AcHobo 89 171 -7 228 349 0 0 chr1 34114942 34115108 -248078556 + (TG)n Simple_repeat Simple_repeat 1 166 0 279 310 11 0 chr1 34115492 34115666 -248077998 + (TG)n Simple_repeat Simple_repeat 1 176 0 228 329 18 0 chr1 34115584 34115748 -248077916 + G-rich Low_complexity Low_complexity 1 167 0 * 222 291 16 28 chr1 34115790 34115972 -248077692 + (TG)n Simple_repeat Simple_repeat 1 180 0 265 331 53 33 chr1 34116593 34116744 -248076920 + MIR3 SINE MIR 1 154 -54 213 257 228 29 chr1 34116902 34117038 -248076626 - MIR3 SINE MIR -44 164 2 345 232 14 0 chr1 34117159 34117228 -248076436 - MIR SINE MIR -61 147 78 1555 147 13 93 chr1 34117719 34118032 -248075632 - AluJo SINE Alu -24 288 1 2366 83 0 7 chr1 34118188 34118488 -248075176 + AluSx SINE Alu 15 312 0 267 282 27 9 chr1 34118698 34118808 -248074856 + MIR SINE MIR 20 131 -77 276 271 119 34 chr1 34119057 34119144 -248074520 + MIR3 SINE MIR 42 138 -70 415 283 175 18 chr1 34119144 34119310 -248074354 + MIR3 SINE MIR 1 192 -16 30 0 0 0 chr1 34119417 34119447 -248074217 + AT_rich Low_complexity Low_complexity 1 30 0 471 209 29 0 chr1 34119509 34119614 -248074050 - MER63C DNA MER1_type -5 925 818 771 143 0 32 chr1 34119614 34119740 -248073924 + FLAM_C SINE Alu 3 124 -9 1428 145 0 5 chr1 34119747 34119954 -248073710 + AluJo SINE Alu 84 289 -23 1914 186 82 86 chr1 34119976 34120107 -248073557 - MER63C DNA MER1_type -224 836 706 2034 111 0 66 chr1 34120107 34120441 -248073223 - AluSx SINE Alu 0 312 1 1914 186 82 86 chr1 34120441 34120589 -248073075 - MER63C DNA MER1_type -354 706 559 3711 135 51 39 chr1 34120589 34121234 -248072430 - MER39B LTR ERV1 0 653 1 1914 186 82 86 chr1 34121234 34121411 -248072253 - MER63C DNA MER1_type -501 559 383 2231 98 17 10 chr1 34121411 34121708 -248071956 + AluSx SINE Alu 1 299 -13 1914 186 82 86 chr1 34121708 34121923 -248071741 - MER63C DNA MER1_type -677 383 169 1550 198 21 3 chr1 34121923 34122033 -248071631 + AluJo SINE Alu 7 114 -198 208 0 62 0 chr1 34122033 34122065 -248071599 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1550 198 21 3 chr1 34122065 34122242 -248071422 + AluJo SINE Alu 114 299 -13 1914 186 82 86 chr1 34122242 34122292 -248071372 - MER63C DNA MER1_type -891 169 120 2145 132 3 0 chr1 34122292 34122588 -248071076 - AluSx SINE Alu -15 297 1 1914 186 82 86 chr1 34122588 34122701 -248070963 - MER63C DNA MER1_type -940 120 1 227 33 0 0 chr1 34123307 34123337 -248070327 - MER39B LTR ERV1 -604 49 20 572 198 17 17 chr1 34123933 34124049 -248069615 + MIR SINE MIR 51 166 -96 2342 76 0 7 chr1 34124050 34124338 -248069326 + AluSq SINE Alu 1 286 -27 1694 131 13 93 chr1 34124644 34124957 -248068707 - AluJo SINE Alu -24 288 1 312 280 72 16 chr1 34125020 34125145 -248068519 - MIR3 SINE MIR -63 145 14 248 316 26 53 chr1 34125733 34125847 -248067817 - MIR SINE MIR -72 190 80 417 264 46 26 chr1 34126268 34126421 -248067243 - MIR SINE MIR -30 232 29 2396 93 0 7 chr1 34126421 34126721 -248066943 - AluSx SINE Alu -14 298 1 417 264 46 26 chr1 34126721 34126741 -248066923 - MIR SINE MIR -233 29 11 353 280 223 0 chr1 34126795 34126952 -248066712 + MLT1J LTR MaLR 88 279 -232 424 307 127 33 chr1 34126971 34127215 -248066449 + L2 LINE L2 2605 2871 -443 401 297 67 102 chr1 34127276 34127589 -248066075 + L2 LINE L2 2969 3270 -2 299 262 112 0 chr1 34128043 34128150 -248065514 - MIR3 SINE MIR -8 200 82 374 285 20 28 chr1 34128181 34128382 -248065282 + MIR SINE MIR 2 262 0 333 196 186 0 chr1 34128428 34128525 -248065139 - MIR SINE MIR -70 192 78 2035 107 0 11 chr1 34128674 34128979 -248064685 - AluSx SINE Alu 0 318 17 218 323 317 0 chr1 34130077 34130263 -248063401 - L2 LINE L2 -36 3236 2992 2086 133 7 0 chr1 34130263 34130549 -248063115 + AluSx SINE Alu 1 288 -24 21 36 0 0 chr1 34130549 34130577 -248063087 + AT_rich Low_complexity Low_complexity 1 28 0 419 94 47 0 chr1 34130829 34130893 -248062771 + FRAM/FAM SINE Alu 16 82 -94 409 190 70 20 chr1 34130985 34131085 -248062579 - MIR SINE MIR -68 140 36 205 189 0 0 chr1 34131114 34131151 -248062513 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 265 128 0 0 chr1 34131164 34131203 -248062461 + 5S rRNA rRNA 1 39 -82 575 164 57 16 chr1 34131586 34131708 -248061956 + L2 LINE L2 3146 3272 0 357 302 89 22 chr1 34131926 34132105 -248061559 - MIR SINE MIR -54 208 18 785 153 12 55 chr1 34132107 34132270 -248061394 + MER41C LTR ERV1 1 156 -398 784 154 0 0 chr1 34132270 34132393 -248061271 + MER41A LTR ERV1 432 554 0 298 284 11 42 chr1 34133362 34133457 -248060207 - MIR SINE MIR -73 135 44 1727 172 7 17 chr1 34133555 34133851 -248059813 + AluJb SINE Alu 1 293 -19 1790 87 0 0 chr1 34133853 34134072 -248059592 + AluSx SINE Alu 1 219 -93 757 112 0 19 chr1 34134072 34134179 -248059485 + AluSg/x SINE Alu 186 290 -20 393 225 0 106 chr1 34134180 34134209 -248059455 - MIR SINE MIR -60 148 118 2299 96 21 0 chr1 34134209 34134500 -248059164 + AluSq SINE Alu 6 302 -11 393 225 0 106 chr1 34134500 34134612 -248059052 - MIR SINE MIR -90 118 22 424 155 0 24 chr1 34135376 34135460 -248058204 + AluJ/FRAM SINE Alu 225 306 -6 261 303 63 46 chr1 34135977 34136121 -248057543 + MIR SINE MIR 3 148 -62 213 335 153 18 chr1 34137546 34137716 -248055948 - MIR3 SINE MIR 0 208 16 275 345 167 0 chr1 34138603 34138771 -248054893 + MIR SINE MIR 46 241 -21 189 156 67 44 chr1 34138998 34139043 -248054621 + MIR SINE MIR 31 76 -132 244 287 263 34 chr1 34139333 34139526 -248054138 + MIR SINE MIR 3 249 -13 2133 119 17 3 chr1 34139526 34139819 -248053845 - AluSx SINE Alu -15 297 1 244 287 263 34 chr1 34139819 34139834 -248053830 + MIR SINE MIR 249 259 -3 227 121 0 0 chr1 34139832 34139865 -248053799 + MIR SINE MIR 54 86 -122 * 358 325 122 20 chr1 34142414 34142611 -248051053 + MIR SINE MIR 29 245 -17 201 282 0 0 chr1 34143346 34143385 -248050279 - L2 LINE L2 -30 3283 3245 261 242 128 67 chr1 34143425 34143546 -248050118 + MIR SINE MIR 87 220 -42 363 44 0 0 chr1 34143546 34143591 -248050073 + (CA)n Simple_repeat Simple_repeat 2 46 0 261 242 128 67 chr1 34143591 34143618 -248050046 + MIR SINE MIR 220 244 -18 237 83 0 0 chr1 34145464 34145500 -248048164 + (TTC)n Simple_repeat Simple_repeat 2 37 0 894 167 0 0 chr1 34145683 34145815 -248047849 + FLAM_C SINE Alu 1 132 -1 1747 155 39 18 chr1 34145853 34146137 -248047527 - AluJb SINE Alu -22 290 1 525 48 0 0 chr1 34146165 34146227 -248047437 + AluY SINE Alu 2 63 -255 2540 80 0 0 chr1 34146392 34146692 -248046972 + AluY SINE Alu 1 300 -11 216 253 38 13 chr1 34146810 34146889 -248046775 + (TATATG)n Simple_repeat Simple_repeat 3 83 0 474 278 26 20 chr1 34147613 34147764 -248045900 + MIR SINE MIR 11 162 -100 2022 128 0 4 chr1 34147765 34148088 -248045576 + AluSc SINE Alu 1 322 0 714 306 57 9 chr1 34148286 34148515 -248045149 + MIR SINE MIR 6 245 -17 315 243 108 36 chr1 34149024 34149135 -248044529 - MIR SINE MIR -110 152 34 2203 99 3 10 chr1 34149414 34149728 -248043936 + AluSp SINE Alu 9 313 0 1321 74 6 0 chr1 34149728 34149891 -248043773 + AluSp SINE Alu 134 297 -16 1933 146 6 37 chr1 34150320 34150641 -248043023 - AluSx SINE Alu -1 311 1 546 148 0 0 chr1 34150658 34150746 -248042918 + FLAM_A SINE Alu 49 136 -6 2514 247 96 57 chr1 34150746 34151821 -248041843 + L2 LINE L2 1894 3030 -283 2416 81 7 0 chr1 34151821 34152119 -248041545 + AluSp SINE Alu 1 300 -13 2514 247 96 57 chr1 34152119 34152414 -248041250 + L2 LINE L2 3030 3312 -1 247 321 139 0 chr1 34152408 34152545 -248041119 - L2 LINE L2 -429 2885 2730 * 236 337 0 11 chr1 34154144 34154233 -248039431 + L2 LINE L2 3226 3313 0 341 286 64 47 chr1 34154274 34154501 -248039163 + MIR SINE MIR 21 251 -11 2542 78 0 0 chr1 34154675 34154982 -248038682 - AluSx SINE Alu -5 307 1 624 170 0 19 chr1 34155362 34155468 -248038196 + AluJb SINE Alu 194 297 -15 3881 168 77 69 chr1 34155482 34157128 -248036536 + L1MB3 LINE L1 4195 5857 -326 1511 161 145 0 chr1 34157128 34157383 -248036281 + AluJo SINE Alu 1 292 -10 3881 168 77 69 chr1 34157383 34157713 -248035951 + L1MB3 LINE L1 5857 6183 0 614 288 119 45 chr1 34157742 34158115 -248035549 - L2 LINE L2 -866 2448 2047 1633 170 45 7 chr1 34158115 34158404 -248035260 - AluJo SINE Alu -12 300 1 182 303 118 13 chr1 34158431 34158507 -248035157 + MER5B DNA MER1_type 60 143 -35 281 331 49 31 chr1 34158559 34158722 -248034942 - L2 LINE L2 -739 2575 2410 2246 109 0 6 chr1 34158974 34159285 -248034379 + AluSx SINE Alu 2 310 -2 270 273 148 11 chr1 34159554 34159642 -248034022 + L2 LINE L2 3205 3304 -9 590 208 149 0 chr1 34159849 34160003 -248033661 + L1ME4a LINE L1 5512 5688 -433 612 263 81 51 chr1 34160016 34160242 -248033422 + L1ME4a LINE L1 5743 5984 -137 1736 144 72 7 chr1 34160242 34160520 -248033144 + AluSx SINE Alu 1 296 -16 612 263 81 51 chr1 34160520 34160628 -248033036 + L1ME4a LINE L1 5984 6087 -34 1002 171 0 59 chr1 34160642 34160829 -248032835 - FAM SINE Alu -2 47 1 445 271 102 12 chr1 34161545 34161711 -248031953 - MIR3 SINE MIR -11 197 17 1715 153 64 7 chr1 34161968 34162250 -248031414 + AluJb SINE Alu 1 298 -14 257 342 156 22 chr1 34163501 34163732 -248029932 + L2 LINE L2 2716 2977 -337 1924 120 149 40 chr1 34163913 34164289 -248029375 + MSTA LTR MaLR 1 417 -11 553 0 82 0 chr1 34164291 34164388 -248029276 + (TA)n Simple_repeat Simple_repeat 1 105 0 804 202 5 62 chr1 34164396 34164479 -248029185 - L1ME3A LINE L1 -49 6121 6035 2360 71 0 0 chr1 34164479 34164786 -248028878 + AluY SINE Alu 1 307 0 804 202 5 62 chr1 34164786 34164894 -248028770 - L1ME3A LINE L1 -135 6035 5940 1077 171 11 0 chr1 34164895 34165082 -248028582 + AluJb SINE Alu 120 308 -4 364 295 62 31 chr1 34165302 34165431 -248028233 + L2 LINE L2 2550 2682 -632 1740 147 31 21 chr1 34165653 34165780 -248027884 + AluJo SINE Alu 12 136 -176 2338 104 3 3 chr1 34165780 34166088 -248027576 + AluSp SINE Alu 1 308 -5 1740 147 31 21 chr1 34166088 34166246 -248027418 + AluJo SINE Alu 136 300 -12 2116 105 56 0 chr1 34166575 34166861 -248026803 + AluSx SINE Alu 1 302 -10 296 354 86 17 chr1 34166969 34167144 -248026520 + L2 LINE L2 2896 3082 -190 2476 133 3 6 chr1 34167173 34167511 -248026153 + MER1B DNA MER1_type 1 337 0 2096 115 7 3 chr1 34167590 34167878 -248025786 + AluSx SINE Alu 1 289 -23 371 329 70 35 chr1 34168092 34168320 -248025344 - MIR SINE MIR -24 238 3 188 299 185 76 chr1 34168803 34169014 -248024650 + MIR SINE MIR 14 247 -15 2473 66 7 0 chr1 34169344 34169645 -248024019 + AluSp SINE Alu 1 303 -10 1751 152 66 0 chr1 34169715 34170004 -248023660 + AluJb SINE Alu 3 310 -2 225 336 9 18 chr1 34170397 34170423 -248023241 - MIR SINE MIR -89 173 148 2133 114 0 37 chr1 34170423 34170747 -248022917 - AluSx SINE Alu 0 312 1 225 336 9 18 chr1 34170747 34170830 -248022834 - MIR SINE MIR -114 148 65 252 267 53 27 chr1 34171094 34171169 -248022495 - L2 LINE L2 -23 3290 3214 771 284 172 16 chr1 34171419 34171676 -248021988 + L2 LINE L2 2877 3211 -102 1644 163 3 51 chr1 34171676 34171989 -248021675 + AluJb SINE Alu 1 298 -14 771 284 172 16 chr1 34171989 34172104 -248021560 + L2 LINE L2 3211 3307 -6 1753 180 0 29 chr1 34172987 34173298 -248020366 + AluJb SINE Alu 1 302 -10 826 153 0 0 chr1 34173300 34173418 -248020246 + FLAM_C SINE Alu 1 118 -15 35 54 0 0 chr1 34173418 34173474 -248020190 + AT_rich Low_complexity Low_complexity 1 56 0 1324 150 0 5 chr1 34173672 34173872 -248019792 + AluSg/x SINE Alu 85 283 -29 219 103 0 0 chr1 34173875 34173914 -248019750 + (CATA)n Simple_repeat Simple_repeat 2 40 0 21 36 0 0 chr1 34174040 34174068 -248019596 + AT_rich Low_complexity Low_complexity 1 28 0 32 47 0 16 chr1 34174265 34174297 -248019367 + AT_rich Low_complexity Low_complexity 1 32 -31 1678 165 47 7 chr1 34174297 34174576 -248019088 + AluJo SINE Alu 2 291 -21 32 47 0 16 chr1 34174576 34174607 -248019057 + AT_rich Low_complexity Low_complexity 32 63 0 255 211 19 0 chr1 34175197 34175249 -248018415 - L2 LINE L2 0 3313 3261 468 0 0 0 chr1 34175571 34175623 -248018041 + (CA)n Simple_repeat Simple_repeat 1 52 0 315 0 0 0 chr1 34175622 34175657 -248018007 + (GA)n Simple_repeat Simple_repeat 2 36 0 * 203 182 0 0 chr1 34176383 34176416 -248017248 + (CATATA)n Simple_repeat Simple_repeat 3 35 0 2341 90 0 3 chr1 34176419 34176718 -248016946 - AluSg SINE Alu -11 299 2 208 71 71 0 chr1 34176728 34176770 -248016894 + T-rich Low_complexity Low_complexity 2 46 0 507 243 199 38 chr1 34176818 34177039 -248016625 + L1ME4a LINE L1 5717 5901 -220 1833 129 92 0 chr1 34177039 34177310 -248016354 + AluSx SINE Alu 1 296 -16 507 243 199 38 chr1 34177310 34177434 -248016230 + L1ME4a LINE L1 5901 6118 -3 31 0 0 0 chr1 34177434 34177465 -248016199 + AT_rich Low_complexity Low_complexity 1 31 0 473 242 0 0 chr1 34177645 34177744 -248015920 - L2 LINE L2 -1002 2312 2214 2319 98 0 0 chr1 34178051 34178346 -248015318 + AluSc SINE Alu 1 295 -14 2093 111 7 20 chr1 34178515 34178821 -248014843 + AluSx SINE Alu 1 302 -10 317 257 107 71 chr1 34180012 34180210 -248013454 - MIR SINE MIR -10 252 50 221 269 15 60 chr1 34180209 34180276 -248013388 - L2 LINE L2 0 3272 3209 * 266 256 96 48 chr1 34180357 34180482 -248013182 + L2 LINE L2 3179 3309 -4 474 168 89 192 chr1 34180742 34180945 -248012719 + MER21B LTR ERV1 13 194 -669 742 184 0 24 chr1 34180945 34181070 -248012594 - FLAM_A SINE Alu -15 127 6 447 240 192 112 chr1 34181074 34181361 -248012303 + MER21B LTR ERV1 180 489 -374 604 89 151 103 chr1 34181361 34181428 -248012236 - Tigger7 DNA MER2_type -63 2428 2366 1754 148 25 4 chr1 34181428 34181729 -248011935 - AluJb SINE Alu 0 307 1 604 89 151 103 chr1 34181729 34181806 -248011858 - Tigger7 DNA MER2_type -125 2366 2276 * 3224 143 57 30 chr1 34181797 34181954 -248011710 - Tigger7 DNA MER2_type -1906 581 430 922 169 16 27 chr1 34181954 34182137 -248011527 - L1PA16 LINE L1 -4 6162 5982 3224 143 57 30 chr1 34182137 34182545 -248011119 - Tigger7 DNA MER2_type -2057 430 1 1240 234 36 7 chr1 34182545 34182818 -248010846 + MER21B LTR ERV1 496 776 -87 248 241 0 0 chr1 34182823 34182877 -248010787 - MER3 DNA MER1_type -154 55 2 229 271 29 0 chr1 34183736 34183806 -248009858 - HAL1b LINE L1 -80 1268 1197 795 126 17 17 chr1 34183946 34184065 -248009599 - FRAM SINE Alu -8 168 50 6773 172 172 47 chr1 34184096 34185657 -248008007 - MER52A LTR ERV1 0 1755 1 708 191 0 0 chr1 34185659 34185769 -248007895 - FLAM_A SINE Alu -32 110 1 568 228 8 31 chr1 34185794 34185921 -248007743 + HsTC2 DNA Tc2 3 126 -1772 779 158 0 72 chr1 34186286 34186340 -248007324 - L1MD1 LINE L1 -20 6222 6166 2509 72 0 0 chr1 34186340 34186644 -248007020 + AluY SINE Alu 1 304 -7 779 158 0 72 chr1 34186644 34186741 -248006923 - L1MD1 LINE L1 -76 6166 6082 2472 216 79 82 chr1 34186741 34186941 -248006723 + MER21B LTR ERV1 1 200 -663 2179 124 0 0 chr1 34186941 34187239 -248006425 + AluSg SINE Alu 1 298 -12 2472 216 79 82 chr1 34187239 34187819 -248005845 + MER21B LTR ERV1 200 779 -84 1223 152 117 49 chr1 34187825 34188089 -248005575 - L1MD2 LINE L1 -158 6201 5920 * 4398 162 64 22 chr1 34188087 34188197 -248005467 + L1MB8 LINE L1 5221 5325 -853 1954 145 28 0 chr1 34188197 34188480 -248005184 + AluSx SINE Alu 4 294 -18 2420 108 32 40 chr1 34188486 34188864 -248004800 - THE1C LTR MaLR 0 375 1 4398 162 64 22 chr1 34188864 34189654 -248004010 + L1MB8 LINE L1 5329 6168 -10 911 121 6 55 chr1 34189656 34189821 -248003843 - L1MD2 LINE L1 -307 5935 5779 367 300 61 9 chr1 34190156 34190270 -248003394 + MIR3 SINE MIR 1 117 -110 184 293 17 17 chr1 34190505 34190563 -248003101 - MIR SINE MIR -89 119 62 375 77 0 0 chr1 34190675 34190727 -248002937 + Alu SINE Alu 249 300 -1 361 217 33 50 chr1 34191019 34191139 -248002525 + MIR SINE MIR 97 214 -48 579 201 75 58 chr1 34191732 34191906 -248001758 - MIR SINE MIR -78 184 8 4195 82 0 4 chr1 34191931 34192444 -248001220 + MER9 LTR ERVK 1 511 0 193 214 95 36 chr1 34192444 34192528 -248001136 - MIR SINE MIR -83 179 91 658 265 39 15 chr1 34192875 34193125 -248000539 - MLT1I LTR MaLR -8 401 59 1132 260 64 12 chr1 34193164 34193491 -248000173 + MLT1I LTR MaLR 66 409 0 1132 139 0 0 chr1 34193557 34193722 -247999942 + AluSg/x SINE Alu 133 297 -13 6000 98 5 9 chr1 34193800 34194809 -247998855 + L1MA2 LINE L1 5053 6059 -245 2010 58 12 0 chr1 34194806 34195063 -247998601 + L1PA8A LINE L1 5300 5559 -572 * 1990 98 0 0 chr1 34195063 34195318 -247998346 - THE1B LTR MaLR -109 255 1 1005 176 12 0 chr1 34197548 34197713 -247995951 - AluSg/x SINE Alu -9 301 135 2188 114 7 0 chr1 34197978 34198267 -247995397 - AluSx SINE Alu -21 291 1 2226 119 80 14 chr1 34198342 34198694 -247994970 - THE1C LTR MaLR 0 375 1 262 300 36 27 chr1 34199400 34199510 -247994154 + L1MC5 LINE L1 7269 7379 -582 387 335 62 11 chr1 34199599 34199859 -247993805 + L1MC4 LINE L1 7615 7887 -155 1072 139 37 74 chr1 34199859 34200074 -247993590 - AluSq SINE Alu -10 303 97 2351 84 0 3 chr1 34200196 34200493 -247993171 + AluY SINE Alu 1 296 -15 765 160 0 0 chr1 34200493 34200618 -247993046 + L1MB3 LINE L1 6057 6181 -2 4151 45 38 0 chr1 34201568 34202040 -247991624 + LTR2B LTR ERV1 1 490 0 209 229 66 16 chr1 34202143 34202204 -247991460 - MIR SINE MIR -64 144 81 305 302 32 21 chr1 34202472 34202661 -247991003 - L1ME2 LINE L1 -212 5952 5762 1442 147 0 92 chr1 34202662 34202968 -247990696 - Tigger2a DNA MER2_type -155 279 2 1277 211 34 49 chr1 34202986 34203393 -247990271 - L1M4 LINE L1 -3475 2671 2271 439 148 23 0 chr1 34203393 34203481 -247990183 + CT-rich Low_complexity Low_complexity 1 90 0 696 189 0 0 chr1 34203501 34203607 -247990057 - FLAM_A SINE Alu -36 106 1 308 264 160 28 chr1 34203652 34203796 -247989868 - L1ME2 LINE L1 -2083 5725 5563 1023 87 0 0 chr1 34203872 34203999 -247989665 - AluSg SINE Alu -179 131 5 4003 90 0 25 chr1 34204028 34204552 -247989112 - MER9 LTR ERVK 0 511 1 268 302 72 7 chr1 34204594 34204733 -247988931 - L1M4 LINE L1 -3524 2622 2475 426 219 0 0 chr1 34204820 34204902 -247988762 + MER81 DNA DNA 1 82 -32 901 237 18 9 chr1 34205093 34205317 -247988347 + Charlie4 DNA MER1_type 7 232 -1729 439 256 43 62 chr1 34205532 34205743 -247987921 + Charlie4 DNA MER1_type 1645 1851 -110 1440 128 5 0 chr1 34205743 34205947 -247987717 - AluSg/x SINE Alu -21 291 87 795 193 0 0 chr1 34206095 34206214 -247987450 + FLAM_C SINE Alu 1 119 -14 390 214 19 39 chr1 34206231 34206334 -247987330 + Charlie4 DNA MER1_type 1861 1961 0 28 0 0 0 chr1 34206356 34206384 -247987280 + AT_rich Low_complexity Low_complexity 1 28 0 295 325 81 51 chr1 34206384 34206581 -247987083 + L2 LINE L2 3100 3302 -11 5164 181 92 6 chr1 34206596 34207662 -247986002 + L1PBa LINE L1 6 1163 -5700 9573 149 44 6 chr1 34207670 34209946 -247983718 + L1PBa LINE L1 1321 3507 -3355 2517 75 31 39 chr1 34209946 34210262 -247983402 + THE1A LTR MaLR 1 315 -40 2204 125 0 3 chr1 34210262 34210565 -247983099 - AluSg SINE Alu -8 302 1 2517 75 31 39 chr1 34210565 34210606 -247983058 + THE1A LTR MaLR 315 355 0 11389 105 14 1 chr1 34210606 34212166 -247981498 + THE1A-int LTR MaLR 1 1580 0 2624 98 0 8 chr1 34212166 34212524 -247981140 + THE1A LTR MaLR 1 355 0 9573 149 44 6 chr1 34212524 34212990 -247980674 + L1PBa LINE L1 3506 4171 -2691 2931 141 26 64 chr1 34212990 34213556 -247980108 + LTR10A LTR ERV1 1 545 -64 1044 234 62 4 chr1 34213575 34213848 -247979816 + LTR10A-int LTR ERV1 1 289 -6360 2319 122 31 6 chr1 34213979 34214339 -247979325 + LTR10A-int LTR ERV1 653 1021 -5628 * 4368 93 6 22 chr1 34214323 34214966 -247978698 + LTR10A-int LTR ERV1 1234 1866 -4783 348 181 0 0 chr1 34215010 34215093 -247978571 + GA-rich Low_complexity Low_complexity 2 84 0 311 186 49 39 chr1 34215094 34215196 -247978468 + LTR10A-int LTR ERV1 1852 1954 -4695 * 2448 173 69 63 chr1 34215186 34215581 -247978083 + LTR10A-int LTR ERV1 2206 2597 -4677 2334 99 0 0 chr1 34215581 34215874 -247977790 + AluY SINE Alu 1 293 -18 2448 173 69 63 chr1 34215874 34216159 -247977505 + LTR10A-int LTR ERV1 2597 3317 -3957 * 4177 185 23 34 chr1 34216139 34216408 -247977256 + LTR10A-int LTR ERV1 953 1223 -5426 2456 83 0 0 chr1 34216408 34216710 -247976954 + AluY SINE Alu 1 302 -9 4177 185 23 34 chr1 34216710 34217569 -247976095 + LTR10A-int LTR ERV1 1223 3554 -3095 3709 102 30 42 chr1 34217604 34218239 -247975425 - LTR10E LTR ERV1 -6 627 1 29462 239 37 38 chr1 34218242 34225553 -247968111 - HERVI LTR ERV1 -1 7784 466 2327 91 0 0 chr1 34225553 34225840 -247967824 + AluY SINE Alu 1 287 -24 29462 239 37 38 chr1 34225840 34225853 -247967811 - HERVI LTR ERV1 -7319 466 454 231 61 0 0 chr1 34225853 34225886 -247967778 + (CAAA)n Simple_repeat Simple_repeat 3 35 0 29462 239 37 38 chr1 34225886 34226328 -247967336 - HERVI LTR ERV1 -7331 454 26 3524 102 45 58 chr1 34226355 34226975 -247966689 - LTR10E LTR ERV1 -21 612 1 252 61 0 0 chr1 34226975 34227008 -247966656 + Harlequin LTR ERV1 1688 1720 -5176 323 226 151 32 chr1 34227010 34227103 -247966561 - LTR8 LTR ERV1 -438 253 150 4975 78 25 1 chr1 34227108 34227835 -247965829 + Harlequin LTR ERV1 1833 2576 -4320 * 13038 206 38 57 chr1 34227813 34230821 -247962843 + Harlequin LTR ERV1 3694 6646 -3 3067 135 22 77 chr1 34230822 34231409 -247962255 + LTR10A LTR ERV1 1 555 -54 9216 162 15 6 chr1 34231419 34232567 -247961097 + L1PB1 LINE L1 3451 4587 -1564 2617 59 0 7 chr1 34232567 34232874 -247960790 - AluY SINE Alu -6 305 1 9216 162 15 6 chr1 34232874 34234400 -247959264 + L1PB1 LINE L1 4587 6150 -1 408 276 21 14 chr1 34234559 34234704 -247958960 + MIR SINE MIR 117 262 0 611 302 19 23 chr1 34234787 34235002 -247958662 + MLT1L LTR MaLR 402 615 0 202 302 87 40 chr1 34235034 34235105 -247958559 - L2 LINE L2 -4 3268 3187 1784 133 73 28 chr1 34235105 34235391 -247958273 + AluSx SINE Alu 1 299 -13 202 302 87 40 chr1 34235391 34235445 -247958219 - L2 LINE L2 -85 3187 3137 226 301 55 0 chr1 34235530 34235603 -247958061 + LTR67 LTR ERVL 118 194 -363 266 254 0 14 chr1 34235964 34236035 -247957629 + MLT1L LTR MaLR 546 615 0 530 284 113 5 chr1 34236329 34236523 -247957141 - MIR SINE MIR -7 255 41 670 163 15 37 chr1 34236683 34236818 -247956846 + FLAM_A SINE Alu 2 133 0 287 268 87 16 chr1 34236821 34236948 -247956716 + MIR SINE MIR 1 136 -126 307 276 22 45 chr1 34237048 34237124 -247956540 - MIR3 SINE MIR -68 140 67 2283 117 3 0 chr1 34237124 34237432 -247956232 + AluSq SINE Alu 1 309 -4 307 276 22 45 chr1 34237432 34237489 -247956175 - MIR3 SINE MIR -141 67 10 274 352 8 16 chr1 34237717 34237845 -247955819 - MIR3 SINE MIR -6 202 76 2016 139 0 4 chr1 34238047 34238328 -247955336 + AluSx SINE Alu 1 280 -32 309 51 0 0 chr1 34238328 34238367 -247955297 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 277 276 58 12 chr1 34238764 34238895 -247954769 - MIR SINE MIR -73 135 20 186 327 0 0 chr1 34239296 34239351 -247954313 - L2 LINE L2 -82 3190 3136 1686 101 0 0 chr1 34239483 34239690 -247953974 + AluSx SINE Alu 1 207 -105 367 113 0 0 chr1 34239690 34239743 -247953921 + AluSx SINE Alu 241 293 -7 263 307 122 0 chr1 34239800 34239929 -247953735 + MIR SINE MIR 9 153 -66 2255 108 7 3 chr1 34240285 34240592 -247953072 + AluSx SINE Alu 1 308 -4 1866 135 40 13 chr1 34241078 34241381 -247952283 + AluJb SINE Alu 1 311 -1 2134 94 20 44 chr1 34241383 34241680 -247951984 + AluSq SINE Alu 1 290 -23 594 262 48 63 chr1 34241755 34242007 -247951657 - MIR SINE MIR -6 256 9 346 298 69 8 chr1 34242028 34242159 -247951505 - L2 LINE L2 0 3272 3134 1324 158 69 133 chr1 34242294 34242655 -247951009 - MLT1A1 LTR MaLR 0 365 28 * 1344 157 103 97 chr1 34242645 34242996 -247950668 + MLT1A1 LTR MaLR 11 363 -2 231 284 42 21 chr1 34242996 34243091 -247950573 - L2 LINE L2 -319 2953 2857 787 143 0 57 chr1 34243225 34243365 -247950299 + FLAM_C SINE Alu 1 132 -1 357 339 137 37 chr1 34243378 34243682 -247949982 - L2 LINE L2 -613 2701 2346 1762 188 112 0 chr1 34243682 34244038 -247949626 - MSTD LTR MaLR 0 396 1 357 339 137 37 chr1 34244038 34244134 -247949530 - L2 LINE L2 -968 2346 2261 628 216 83 62 chr1 34244759 34244838 -247948826 - MIR SINE MIR -10 252 176 1766 148 21 3 chr1 34244838 34245128 -247948536 + AluSg SINE Alu 1 295 -15 628 216 83 62 chr1 34245128 34245289 -247948375 - MIR SINE MIR -86 176 7 249 194 30 15 chr1 34245559 34245626 -247948038 - L1ME LINE L1 -317 5804 5737 314 246 0 0 chr1 34245629 34245698 -247947966 - MER5A DNA MER1_type -89 100 32 199 180 20 40 chr1 34245730 34245780 -247947884 - MIR3 SINE MIR -36 172 124 230 182 23 80 chr1 34246162 34246250 -247947414 + LTR67 LTR ERVL 475 557 0 2284 99 7 3 chr1 34246575 34246879 -247946785 + AluSx SINE Alu 1 305 -7 1087 115 39 0 chr1 34246881 34247037 -247946627 + AluSg/x SINE Alu 136 297 -15 1711 153 28 17 chr1 34247185 34247314 -247946350 + AluJo SINE Alu 1 127 -185 2376 96 0 0 chr1 34247314 34247615 -247946049 + AluSc SINE Alu 1 301 -8 1711 153 28 17 chr1 34247615 34247773 -247945891 + AluJo SINE Alu 127 291 -21 2778 168 30 39 chr1 34247814 34248321 -247945343 + Tigger7 DNA MER2_type 1 502 -1985 776 176 0 40 chr1 34248571 34248719 -247944945 + FLAM_C SINE Alu 2 143 0 1928 142 3 38 chr1 34248723 34249039 -247944625 + AluJb SINE Alu 1 305 -7 2349 92 0 0 chr1 34249417 34249709 -247943955 + AluY SINE Alu 1 292 -19 1889 127 6 48 chr1 34249727 34250041 -247943623 + AluSq SINE Alu 1 301 -12 564 221 84 0 chr1 34250457 34250611 -247943053 + L1MC4 LINE L1 7732 7898 -144 1769 156 13 27 chr1 34251017 34251318 -247942346 - AluJb SINE Alu -15 297 1 1677 144 69 36 chr1 34251367 34251728 -247941936 + THE1C LTR MaLR 3 375 0 2241 126 0 0 chr1 34252067 34252368 -247941296 - AluSx SINE Alu -11 301 1 341 226 64 166 chr1 34252744 34252979 -247940685 - MIR SINE MIR -1 261 51 2413 93 10 0 chr1 34253358 34253660 -247940004 - AluSq SINE Alu -8 305 1 1798 179 10 0 chr1 34253954 34254250 -247939414 + AluJb SINE Alu 1 299 -13 247 330 90 11 chr1 34254355 34254543 -247939121 + L2 LINE L2 925 1127 -2187 875 304 183 33 chr1 34255128 34255596 -247938068 + L2 LINE L2 1751 2147 -1125 180 0 0 0 chr1 34255596 34255616 -247938048 + (CAAT)n Simple_repeat Simple_repeat 1 20 0 875 304 183 33 chr1 34255616 34255629 -247938035 + L2 LINE L2 2147 2157 -1115 2173 124 3 0 chr1 34255629 34255936 -247937728 + AluSx SINE Alu 1 308 -4 875 304 183 33 chr1 34255936 34256600 -247937064 + L2 LINE L2 2157 3063 -209 235 269 77 0 chr1 34256652 34256730 -247936934 + L2 LINE L2 3172 3255 -58 308 49 24 0 chr1 34258355 34258396 -247935268 - AluY SINE Alu -261 42 1 1059 127 0 0 chr1 34258430 34258605 -247935059 + AluSg/x SINE Alu 137 311 0 2158 126 3 7 chr1 34258796 34259106 -247934558 + AluSx SINE Alu 1 309 -3 1690 182 39 0 chr1 34259183 34259463 -247934201 + AluJo SINE Alu 1 291 -21 2087 129 3 0 chr1 34260686 34260973 -247932691 - AluSx SINE Alu -24 288 1 1140 203 79 12 chr1 34261402 34261643 -247932021 - AluJo SINE Alu -55 257 1 436 261 147 78 chr1 34261655 34261753 -247931911 - L1ME4a LINE L1 -5 6116 6026 2309 99 3 0 chr1 34261753 34262047 -247931617 - AluSp SINE Alu -18 295 1 436 261 147 78 chr1 34262047 34262147 -247931517 - L1ME4a LINE L1 -95 6026 5934 2528 77 0 3 chr1 34262147 34262458 -247931206 - AluY SINE Alu -1 310 1 436 261 147 78 chr1 34262458 34262565 -247931099 - L1ME4a LINE L1 -187 5934 5789 770 178 0 15 chr1 34262720 34262855 -247930809 + FLAM_A SINE Alu 1 133 0 1760 168 55 7 chr1 34262895 34263186 -247930478 + AluJo SINE Alu 1 305 -7 2369 70 25 0 chr1 34264023 34264308 -247929356 + AluY SINE Alu 1 292 -19 258 284 241 15 chr1 34264477 34264631 -247929033 - MER5A DNA MER1_type -3 175 1 246 206 63 16 chr1 34264643 34264706 -247928958 - MIR SINE MIR -115 147 82 1215 151 0 0 chr1 34264868 34265040 -247928624 - AluSg/x SINE Alu -7 305 134 2058 128 14 0 chr1 34265040 34265336 -247928328 - AluSq SINE Alu -13 300 1 1095 210 186 27 chr1 34266702 34267078 -247926586 + L1MC4 LINE L1 6463 6898 -1144 581 283 90 13 chr1 34267081 34267515 -247926149 + L1MC4 LINE L1 7274 7661 -147 2069 115 17 14 chr1 34267515 34267811 -247925853 + AluSq SINE Alu 1 297 -16 581 283 90 13 chr1 34267811 34267869 -247925795 + L1MC4 LINE L1 7661 7713 -95 1882 105 8 8 chr1 34268604 34268871 -247924793 + AluSx SINE Alu 1 267 -45 1451 155 17 13 chr1 34268873 34269112 -247924552 - AluJb SINE Alu -72 240 1 809 187 0 0 chr1 34269113 34269268 -247924396 - L1M4 LINE L1 -1104 5540 5386 * 2555 220 73 100 chr1 34269256 34269446 -247924218 - L1M4 LINE L1 -5421 1121 927 2161 132 0 0 chr1 34269446 34269733 -247923931 - AluSx SINE Alu -25 287 1 2555 220 73 100 chr1 34269733 34270078 -247923586 - L1M4 LINE L1 -5615 927 574 2076 132 0 0 chr1 34270078 34270358 -247923306 + AluSx SINE Alu 1 280 -32 939 29 22 22 chr1 34270360 34270499 -247923165 + (TAGA)n Simple_repeat Simple_repeat 1 139 0 2555 220 73 100 chr1 34270499 34270532 -247923132 - L1M4 LINE L1 -5969 573 541 498 17 0 0 chr1 34270532 34270591 -247923073 + (TAGA)n Simple_repeat Simple_repeat 1 59 0 2555 220 73 100 chr1 34270591 34271165 -247922499 - L1M4 LINE L1 -6001 541 5 344 279 172 27 chr1 34271935 34272197 -247921467 + L2 LINE L2 2452 2751 -563 1136 261 69 37 chr1 34272197 34272499 -247921165 + L1ME LINE L1 4809 5100 -1070 2245 117 0 13 chr1 34272499 34272826 -247920838 + AluSq SINE Alu 3 313 0 1136 261 69 37 chr1 34272826 34273147 -247920517 + L1ME LINE L1 5100 5460 -710 198 333 102 32 chr1 34273189 34273375 -247920289 + L2 LINE L2 3115 3313 0 269 250 50 0 chr1 34273381 34273461 -247920203 - MIR SINE MIR -95 167 84 2749 165 15 10 chr1 34273861 34274063 -247919601 + L1MB5 LINE L1 5629 5828 -346 2434 79 0 35 chr1 34274063 34274381 -247919283 + AluY SINE Alu 1 307 -4 2749 165 15 10 chr1 34274381 34274700 -247918964 + L1MB5 LINE L1 5828 6153 -21 309 185 0 0 chr1 34274849 34274914 -247918750 + (TG)n Simple_repeat Simple_repeat 1 65 0 313 278 48 40 chr1 34275081 34275207 -247918457 - MIR SINE MIR -60 148 22 183 330 26 52 chr1 34275586 34275665 -247917999 - MIR SINE MIR -132 130 53 2378 157 96 12 chr1 34275665 34276144 -247917520 + LTR44 LTR ERV1 1 519 0 183 330 26 52 chr1 34276144 34276179 -247917485 - MIR SINE MIR -209 53 19 620 299 56 22 chr1 34276202 34276433 -247917231 + MIR SINE MIR 21 259 -3 1489 249 62 62 chr1 34276604 34277110 -247916554 + MER77 LTR ERV1 119 673 -5 1437 104 9 55 chr1 34277118 34277338 -247916326 + AluSg/x SINE Alu 86 295 -15 798 169 0 22 chr1 34277353 34277489 -247916175 + FLAM_C SINE Alu 1 133 0 325 280 175 20 chr1 34277631 34277831 -247915833 - MIR SINE MIR -31 231 1 254 250 40 0 chr1 34278012 34278088 -247915576 - MER102a DNA MER1_type 0 330 252 2035 146 20 3 chr1 34278155 34278456 -247915208 - AluJo SINE Alu -6 306 1 254 308 134 29 chr1 34278886 34279058 -247914606 - L2 LINE L2 -3 3310 3121 481 273 0 37 chr1 34279058 34279219 -247914445 + AluJo SINE Alu 89 243 -69 214 219 62 0 chr1 34280537 34280601 -247913063 + (CATATA)n Simple_repeat Simple_repeat 4 71 0 356 264 74 43 chr1 34280719 34280882 -247912782 - MLT1L LTR MaLR -2 613 446 1922 114 7 39 chr1 34280882 34281039 -247912625 - AluJb SINE Alu -24 288 127 2278 73 7 0 chr1 34281039 34281313 -247912351 - AluY SINE Alu -17 294 19 2376 101 7 0 chr1 34281317 34281623 -247912041 - AluSg SINE Alu -2 308 1 1922 114 7 39 chr1 34281623 34281740 -247911924 - AluJb SINE Alu -188 124 18 311 292 10 10 chr1 34281807 34281903 -247911761 - MLT1L LTR MaLR -165 450 355 295 242 38 23 chr1 34282439 34282571 -247911093 + GA-rich Low_complexity Low_complexity 5 138 0 2191 91 6 69 chr1 34283010 34283330 -247910334 + AluSx SINE Alu 1 300 -12 232 308 50 39 chr1 34283719 34283901 -247909763 + L2 LINE L2 2725 2908 -406 239 333 48 43 chr1 34284266 34284473 -247909191 - MIR SINE MIR -41 221 14 691 253 16 46 chr1 34287004 34287244 -247906420 + MIR SINE MIR 30 262 0 439 209 0 12 chr1 34288162 34288248 -247905416 - FRAM/FAM SINE Alu -96 80 1 1001 161 143 90 chr1 34288256 34288535 -247905129 - AluJo SINE Alu -18 294 1 903 214 11 6 chr1 34288538 34288720 -247904944 - MIR SINE MIR -46 216 34 318 259 147 0 chr1 34288838 34288954 -247904710 - MIR SINE MIR -110 152 20 2210 133 0 13 chr1 34290426 34290734 -247902930 + AluSx SINE Alu 1 304 -8 418 143 0 0 chr1 34290740 34290803 -247902861 + AluS SINE Alu 2 64 -247 1042 118 0 0 chr1 34290805 34290949 -247902715 + AluSg/x SINE Alu 169 312 0 527 176 143 0 chr1 34290963 34291082 -247902582 + MIR SINE MIR 21 156 -106 354 267 0 0 chr1 34291150 34291225 -247902439 + L2 LINE L2 3235 3309 -4 238 164 55 41 chr1 34291225 34291298 -247902366 + MIR SINE MIR 73 146 -62 371 303 124 5 chr1 34291616 34291834 -247901830 - MIR SINE MIR 0 262 19 241 312 43 0 chr1 34293633 34293726 -247899938 + MIR SINE MIR 47 143 -65 424 296 51 34 chr1 34294341 34294517 -247899147 + MER5A DNA MER1_type 1 179 -10 200 297 108 0 chr1 34295202 34295276 -247898388 - MIR SINE MIR -148 114 33 434 252 61 0 chr1 34295372 34295487 -247898177 + MIR SINE MIR 67 188 -74 375 315 146 5 chr1 34295490 34295703 -247897961 + L2 LINE L2 3067 3309 -4 357 309 136 0 chr1 34296086 34296277 -247897387 - L2 LINE L2 -83 3230 3014 694 125 0 0 chr1 34296281 34296385 -247897279 + FLAM_C SINE Alu 2 105 -38 2378 119 0 0 chr1 34296511 34296822 -247896842 - AluJb SINE Alu -1 311 1 24 32 0 0 chr1 34296822 34296853 -247896811 + AT_rich Low_complexity Low_complexity 1 31 0 320 318 127 12 chr1 34296853 34297165 -247896499 - L2 LINE L2 -250 3022 2685 2162 136 0 48 chr1 34297494 34297848 -247895816 - MER1B DNA MER1_type 0 337 1 435 255 10 0 chr1 34297883 34297981 -247895683 - MIR SINE MIR -110 152 54 536 264 127 14 chr1 34297995 34298207 -247895457 - MIR SINE MIR -6 256 21 1051 143 0 0 chr1 34298825 34298979 -247894685 - AluJb SINE Alu -25 287 134 2184 134 0 10 chr1 34298979 34299293 -247894371 - AluJb SINE Alu -1 311 1 27 73 0 0 chr1 34299438 34299493 -247894171 + AT_rich Low_complexity Low_complexity 1 55 0 259 352 93 0 chr1 34299523 34299705 -247893959 + L1ME4a LINE L1 5723 5921 -200 399 259 93 7 chr1 34299836 34299975 -247893689 - L3 LINE CR1 -10 1567 1417 2017 135 7 0 chr1 34300166 34300448 -247893216 + AluSx SINE Alu 3 286 -26 189 0 0 0 chr1 34300451 34300472 -247893192 + (TAAAA)n Simple_repeat Simple_repeat 4 24 0 2716 117 82 21 chr1 34300479 34300680 -247892984 + L1MB3 LINE L1 5631 5818 -365 2422 105 0 6 chr1 34300680 34300994 -247892670 + AluSx SINE Alu 1 312 0 2716 117 82 21 chr1 34300994 34301307 -247892357 + L1MB3 LINE L1 5818 6176 -7 297 344 82 41 chr1 34301435 34301679 -247891985 - L2 LINE L2 -469 2845 2592 2267 102 3 0 chr1 34301819 34302139 -247891525 + AluSx SINE Alu 1 321 0 407 176 19 65 chr1 34302372 34302480 -247891184 + MIR3 SINE MIR 52 154 -54 471 248 107 0 chr1 34302710 34302859 -247890805 - MIR SINE MIR -70 192 28 523 225 42 21 chr1 34303200 34303342 -247890322 + MIR SINE MIR 60 204 -58 274 294 56 48 chr1 34303696 34303822 -247889842 + MIR3 SINE MIR 14 140 -68 191 279 289 0 chr1 34303958 34304062 -247889602 - MIR SINE MIR -20 242 109 195 129 0 0 chr1 34304269 34304300 -247889364 + (CA)n Simple_repeat Simple_repeat 1 31 0 189 0 0 0 chr1 34304425 34304446 -247889218 + (TC)n Simple_repeat Simple_repeat 1 21 0 * 306 0 0 0 chr1 34304445 34304479 -247889185 + (CA)n Simple_repeat Simple_repeat 1 34 0 215 235 0 39 chr1 34304606 34304657 -247889007 + G-rich Low_complexity Low_complexity 6 54 0 195 129 0 0 chr1 34304994 34305025 -247888639 + (CGGA)n Simple_repeat Simple_repeat 2 32 0 29 0 0 0 chr1 34305556 34305585 -247888079 + GC_rich Low_complexity Low_complexity 1 29 0 30 0 0 0 chr1 34305653 34305683 -247887981 + GC_rich Low_complexity Low_complexity 1 30 0 204 109 0 65 chr1 34305704 34305750 -247887914 + (CCCCG)n Simple_repeat Simple_repeat 5 47 0 194 279 0 58 chr1 34305998 34306084 -247887580 + L2 LINE L2 3191 3271 -1 351 179 115 0 chr1 34306088 34306166 -247887498 + MIR SINE MIR 90 176 -86 1205 132 0 0 chr1 34306213 34306380 -247887284 - FRAM SINE Alu -11 165 1 2093 154 0 10 chr1 34306873 34307184 -247886480 - AluJo SINE Alu -3 309 2 283 176 88 77 chr1 34307414 34307505 -247886159 - MIR SINE MIR -72 190 99 258 261 81 18 chr1 34307737 34307848 -247885816 + L2 LINE L2 3152 3269 -3 290 262 43 71 chr1 34308459 34308600 -247885064 + MIR SINE MIR 76 212 -50 191 209 23 0 chr1 34308713 34308756 -247884908 + MIR SINE MIR 79 122 -140 498 242 105 97 chr1 34309351 34309599 -247884065 - MIR SINE MIR -4 258 9 239 264 28 0 chr1 34309940 34310012 -247883652 - L2 LINE L2 -53 3219 3146 290 298 0 10 chr1 34310553 34310657 -247883007 + (TGGA)n Simple_repeat Simple_repeat 3 105 0 312 298 35 0 chr1 34310660 34310774 -247882890 + L1MC4 LINE L1 7924 8041 -1 2498 67 3 3 chr1 34311092 34311392 -247882272 + AluSp SINE Alu 1 300 -13 295 299 88 15 chr1 34311859 34311996 -247881668 - MIR3 SINE MIR -58 150 4 366 215 157 41 chr1 34312147 34312268 -247881396 + MIR SINE MIR 18 152 -56 1904 154 13 10 chr1 34312269 34312580 -247881084 + AluJb SINE Alu 1 312 0 539 316 87 4 chr1 34312749 34312980 -247880684 + MIR SINE MIR 13 262 0 1421 140 4 0 chr1 34313554 34313783 -247879881 + L1MB3 LINE L1 5781 6010 -173 1243 149 5 5 chr1 34313783 34313978 -247879686 + AluSp SINE Alu 117 311 -2 864 159 0 0 chr1 34313983 34314109 -247879555 + FLAM_C SINE Alu 1 126 -17 884 224 0 0 chr1 34314601 34314780 -247878884 + AluSq SINE Alu 118 296 -17 2822 117 40 46 chr1 34314781 34315229 -247878435 + L1MA8 LINE L1 5767 6216 -75 212 0 36 0 chr1 34315229 34315257 -247878407 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1896 150 0 0 chr1 34315260 34315540 -247878124 - AluJb SINE Alu -32 280 1 2822 117 40 46 chr1 34315540 34315608 -247878056 + L1MA8 LINE L1 6218 6284 -7 279 241 58 11 chr1 34315652 34315739 -247877925 - MIR3 SINE MIR -47 161 71 272 319 11 32 chr1 34315943 34316037 -247877627 + L2 LINE L2 3161 3252 -20 2375 119 0 0 chr1 34316056 34316368 -247877296 + AluSx SINE Alu 1 312 0 24 0 0 0 chr1 34316454 34316478 -247877186 + AT_rich Low_complexity Low_complexity 1 24 0 2011 135 0 7 chr1 34316478 34316767 -247876897 - AluSx SINE Alu -25 287 1 307 238 0 12 chr1 34316794 34316878 -247876786 - L1ME4a LINE L1 -207 5914 5832 632 245 21 7 chr1 34317021 34317164 -247876500 - L2 LINE L2 -10 3303 3159 12916 35 0 0 chr1 34317357 34319498 -247874166 - L1PA5 LINE L1 -222 5932 3791 936 37 0 0 chr1 34319499 34319606 -247874058 - U6 snRNA snRNA 0 107 1 1530 175 14 18 chr1 34319616 34319896 -247873768 - L1MB7 LINE L1 0 6184 5906 24 32 0 0 chr1 34319897 34319928 -247873736 + AT_rich Low_complexity Low_complexity 1 31 0 262 302 75 28 chr1 34320193 34320236 -247873428 - L2 LINE L2 0 3272 3232 1968 118 16 33 chr1 34320236 34320541 -247873123 - AluJb SINE Alu -12 300 1 262 302 75 28 chr1 34320541 34320603 -247873061 - L2 LINE L2 -40 3232 3162 216 286 19 9 chr1 34321144 34321249 -247872415 + (TG)n Simple_repeat Simple_repeat 1 106 0 995 262 119 29 chr1 34321251 34321637 -247872027 - LTR16C LTR ERVL 0 491 71 361 293 40 13 chr1 34321930 34322080 -247871584 + MIR SINE MIR 96 249 -13 277 238 0 24 chr1 34323037 34323121 -247870543 + (TG)n Simple_repeat Simple_repeat 1 82 0 584 230 39 146 chr1 34323178 34323508 -247870156 + MER102b DNA MER1_type 47 341 0 378 111 74 19 chr1 34324487 34324595 -247869069 + T-rich Low_complexity Low_complexity 5 118 0 2035 151 0 3 chr1 34324615 34324914 -247868750 - AluJb SINE Alu -6 306 9 510 240 60 60 chr1 34325242 34325442 -247868222 + MIR SINE MIR 2 201 -61 456 269 10 0 chr1 34325938 34326042 -247867622 - MER81 DNA DNA -1 113 9 1017 130 113 113 chr1 34326589 34326873 -247866791 - LTR10A LTR ERV1 -318 291 8 419 176 0 55 chr1 34326878 34326969 -247866695 + FLAM_C SINE Alu 53 138 -5 593 268 132 4 chr1 34326971 34327199 -247866465 - MLT1C LTR MaLR -57 410 154 282 322 16 8 chr1 34327361 34327482 -247866182 + L2 LINE L2 2222 2343 -971 2241 120 7 0 chr1 34327881 34328180 -247865484 - AluSx SINE Alu -11 301 1 4746 108 49 9 chr1 34328281 34329030 -247864634 - MER52C LTR ERV1 0 1278 500 393 235 11 95 chr1 34329352 34329531 -247864133 + MER69A DNA AcHobo 1 164 -13 228 250 138 0 chr1 34329703 34329783 -247863881 + MIR SINE MIR 63 153 -109 2465 155 30 128 chr1 34330495 34330542 -247863122 + Tigger1 DNA MER2_type 1 51 -2367 224 29 0 29 chr1 34330542 34330576 -247863088 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 2465 155 30 128 chr1 34330576 34330773 -247862891 + Tigger1 DNA MER2_type 51 266 -2152 393 22 0 0 chr1 34330773 34330819 -247862845 + (TTTCC)n Simple_repeat Simple_repeat 3 48 0 1619 167 11 39 chr1 34330823 34331105 -247862559 - AluSx SINE Alu -38 274 1 2465 155 30 128 chr1 34331105 34331512 -247862152 + Tigger1 DNA MER2_type 269 594 -1824 627 272 99 5 chr1 34331513 34331704 -247861960 - MIR SINE MIR -46 216 8 352 267 35 0 chr1 34331711 34331797 -247861867 + MIR SINE MIR 79 167 -95 2998 96 2 5 chr1 34332107 34332526 -247861138 - LTR1 LTR ERV1 0 785 368 4946 61 2 0 chr1 34332526 34333163 -247860501 + HERVL-A1 LTR ERVL 5017 5654 0 3190 61 21 7 chr1 34333167 34333594 -247860070 + MLT2A1 LTR ERVL 5 437 -7 2052 150 0 0 chr1 34333696 34333990 -247859674 - AluSx SINE Alu -18 294 1 247 321 28 18 chr1 34334147 34334256 -247859408 - L1MC4a LINE L1 -455 7353 7244 * 848 232 59 29 chr1 34334253 34334546 -247859118 - L1MC4 LINE L1 -727 7234 6957 507 272 121 27 chr1 34334575 34334799 -247858865 + MLT1J2 LTR MaLR 202 446 -4 2228 115 3 13 chr1 34334817 34335131 -247858533 - AluSq SINE Alu -2 311 1 373 218 64 32 chr1 34335132 34335320 -247858344 - HAL1 LINE L1 -1426 1081 888 2162 108 0 4 chr1 34336007 34336325 -247857339 + AluSc SINE Alu 1 317 0 24 0 0 0 chr1 34336459 34336483 -247857181 + AT_rich Low_complexity Low_complexity 1 24 0 2018 119 18 0 chr1 34336498 34336775 -247856889 - AluSx SINE Alu -30 282 1 191 231 141 13 chr1 34337214 34337292 -247856372 + L2 LINE L2 3225 3312 -1 217 219 14 137 chr1 34338139 34338166 -247855498 + MIR SINE MIR 84 113 -95 2085 130 7 3 chr1 34338166 34338466 -247855198 - AluSx SINE Alu -11 301 1 217 219 14 137 chr1 34338466 34338511 -247855153 + MIR SINE MIR 113 147 -61 214 234 0 0 chr1 34338810 34338857 -247854807 + MIR SINE MIR 67 113 -149 2057 122 7 0 chr1 34339312 34339599 -247854065 + AluSx SINE Alu 1 289 -23 620 124 9 53 chr1 34339599 34339712 -247853952 + AluSg/x SINE Alu 203 310 0 1458 217 59 48 chr1 34339739 34340177 -247853487 - LTR47B LTR ERVL 0 443 1 2448 83 6 10 chr1 34340963 34341277 -247852387 + AluSq SINE Alu 1 313 0 1362 157 0 14 chr1 34342115 34342332 -247851332 - AluJb SINE Alu -12 300 87 2608 126 0 3 chr1 34342583 34342947 -247850717 - THE1B LTR MaLR 0 364 2 1667 148 62 36 chr1 34343650 34344007 -247849657 - THE1C LTR MaLR -9 366 1 340 323 40 28 chr1 34344604 34344829 -247848835 - LTR23-int LTR ERV1 -1640 5161 2727 502 311 58 58 chr1 34344976 34345439 -247848225 - LTR23-int LTR ERV1 -2094 2553 2091 681 322 63 31 chr1 34347161 34347605 -247846059 - LTR23-int LTR ERV1 -4063 584 127 810 60 0 0 chr1 34347870 34347970 -247845694 - AluY SINE Alu 0 311 212 234 0 0 0 chr1 34348988 34349014 -247844650 + (T)n Simple_repeat Simple_repeat 1 26 0 2459 60 0 10 chr1 34349246 34349560 -247844104 + AluY SINE Alu 1 311 0 1783 153 0 40 chr1 34350111 34350411 -247843253 + AluJo SINE Alu 5 292 -20 1366 104 152 4 chr1 34350743 34350973 -247842691 - AluSg1 SINE Alu -45 264 1 235 257 0 50 chr1 34351348 34351449 -247842215 - LTR23 LTR ERV1 0 437 342 1247 136 6 0 chr1 34351595 34351793 -247841871 + AluSc SINE Alu 103 301 0 987 203 5 0 chr1 34351796 34351983 -247841681 - L1M4 LINE L1 -1044 5102 4915 2610 133 31 12 chr1 34352460 34352875 -247840789 - MSTB LTR MaLR 0 426 4 517 259 40 30 chr1 34353163 34353364 -247840300 + L2 LINE L2 2859 3061 -252 10385 115 14 5 chr1 34353632 34355210 -247838454 - Tigger1 DNA MER2_type -645 1773 182 1918 118 85 0 chr1 34355218 34355489 -247838175 - AluSx SINE Alu -18 294 1 410 213 205 8 chr1 34355811 34355933 -247837731 + MIR SINE MIR 55 200 -62 996 119 0 0 chr1 34356801 34356978 -247836686 + (TCCA)n Simple_repeat Simple_repeat 1 177 0 26 30 0 0 chr1 34357272 34357305 -247836359 + AT_rich Low_complexity Low_complexity 1 33 0 2334 115 0 0 chr1 34357459 34357764 -247835900 - AluSq SINE Alu -8 305 1 1247 159 18 14 chr1 34358022 34358242 -247835422 - AluJo SINE Alu -5 307 87 1646 188 56 28 chr1 34358278 34358746 -247834918 + MER99 DNA DNA 197 726 -102 428 214 258 44 chr1 34358941 34359305 -247834359 + L2 LINE L2 2871 3312 -1 209 250 23 0 chr1 34359659 34359703 -247833961 + MIR SINE MIR 47 91 -117 783 274 165 12 chr1 34359888 34360318 -247833346 + L2 LINE L2 1131 1626 -1688 1202 143 0 0 chr1 34360318 34360493 -247833171 - AluY SINE Alu -17 294 120 2045 128 0 10 chr1 34360594 34360918 -247832746 + AluSx SINE Alu 1 321 0 187 357 24 0 chr1 34360971 34361055 -247832609 + L2 LINE L2 2736 2821 -493 837 175 41 18 chr1 34361227 34361398 -247832266 + MER45A DNA AcHobo 4 178 0 206 192 0 41 chr1 34361494 34361567 -247832097 + (TGAA)n Simple_repeat Simple_repeat 3 72 0 451 276 35 39 chr1 34362323 34362526 -247831138 + L2 LINE L2 2836 3037 -276 532 294 144 0 chr1 34362572 34362766 -247830898 + MIR SINE MIR 40 261 -1 236 255 94 0 chr1 34362774 34362880 -247830784 + L2 LINE L2 3138 3253 -19 1764 136 25 3 chr1 34363507 34363793 -247829871 + AluJb SINE Alu 1 292 -20 409 224 41 0 chr1 34363809 34363907 -247829757 - MIR SINE MIR -62 200 99 1671 78 0 5 chr1 34364049 34364253 -247829411 - AluSg SINE Alu -107 203 1 2220 116 13 0 chr1 34364309 34364611 -247829053 - AluSx SINE Alu -6 306 1 481 221 35 153 chr1 34364678 34364932 -247828732 - MIR SINE MIR -21 241 18 185 81 0 27 chr1 34365018 34365055 -247828609 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 277 313 101 32 chr1 34365210 34365427 -247828237 + L2 LINE L2 2145 2376 -938 237 247 91 0 chr1 34365615 34365692 -247827972 - L1ME2 LINE L1 -19 6145 6062 356 276 83 36 chr1 34365878 34366070 -247827594 + L1ME1 LINE L1 5870 6070 -96 2015 128 3 17 chr1 34366086 34366382 -247827282 + AluSx SINE Alu 2 293 -19 253 248 95 36 chr1 34366684 34366821 -247826843 - L1ME4a LINE L1 -14 6107 5963 1734 158 10 52 chr1 34366871 34367033 -247826631 - AluJb SINE Alu -15 297 153 2360 88 0 3 chr1 34367033 34367329 -247826335 - AluSq SINE Alu -18 295 1 1734 158 10 52 chr1 34367329 34367476 -247826188 - AluJb SINE Alu -159 153 1 505 205 45 9 chr1 34367680 34367792 -247825872 - FRAM SINE Alu -1 175 60 345 298 80 32 chr1 34367811 34367999 -247825665 + MIR SINE MIR 66 262 0 369 296 74 30 chr1 34368032 34368235 -247825429 - L1ME4a LINE L1 -342 5779 5568 2004 127 17 14 chr1 34368390 34368682 -247824982 + AluSx SINE Alu 1 293 -19 491 248 33 46 chr1 34368808 34368961 -247824703 - MIR3 SINE MIR -7 201 51 180 0 0 0 chr1 34369414 34369434 -247824230 + (T)n Simple_repeat Simple_repeat 1 20 0 295 208 0 0 chr1 34369460 34369508 -247824156 + AluJ/monomer SINE Alu 1 48 -254 2239 77 0 21 chr1 34369539 34369826 -247823838 + AluSc SINE Alu 1 281 -28 187 379 98 0 chr1 34369845 34369998 -247823666 + L2 LINE L2 2685 2852 -462 2256 82 11 3 chr1 34370428 34370710 -247822954 - AluSq SINE Alu -19 294 11 456 244 153 9 chr1 34371391 34371616 -247822048 - MIR SINE MIR 0 262 3 24 0 0 0 chr1 34371744 34371768 -247821896 + AT_rich Low_complexity Low_complexity 1 24 0 1565 172 58 10 chr1 34372145 34372436 -247821228 + AluJb SINE Alu 1 305 -7 357 313 73 13 chr1 34372813 34372963 -247820701 + MIR3 SINE MIR 38 196 -12 225 273 0 0 chr1 34373361 34373416 -247820248 + L2 LINE L2 3258 3312 -1 458 153 0 35 chr1 34373632 34373717 -247819947 - FLAM_A SINE Alu -8 134 53 1958 91 0 0 chr1 34373920 34374161 -247819503 + AluSq SINE Alu 45 285 -28 21 0 0 0 chr1 34374352 34374373 -247819291 + AT_rich Low_complexity Low_complexity 1 21 0 1824 146 53 0 chr1 34375511 34375792 -247817872 + AluJo SINE Alu 1 296 -16 2186 89 14 10 chr1 34376247 34376540 -247817124 + AluSp SINE Alu 1 294 -19 2319 105 0 0 chr1 34378224 34378520 -247815144 - AluY SINE Alu -15 296 1 25 0 0 0 chr1 34378521 34378546 -247815118 + AT_rich Low_complexity Low_complexity 1 25 0 1699 168 0 27 chr1 34378661 34378953 -247814711 + AluJo SINE Alu 13 296 -16 462 256 72 99 chr1 34379466 34379689 -247813975 - MIR SINE MIR -44 218 2 198 0 0 0 chr1 34380143 34380165 -247813499 + (T)n Simple_repeat Simple_repeat 1 22 0 762 182 0 0 chr1 34380601 34380733 -247812931 + FLAM_C SINE Alu 2 133 0 1746 159 65 0 chr1 34381064 34381341 -247812323 - AluJb SINE Alu -17 295 1 320 318 93 0 chr1 34381416 34381523 -247812141 + MIR3 SINE MIR 51 167 -41 2188 127 0 3 chr1 34381534 34381841 -247811823 - AluSx SINE Alu -6 306 1 210 105 0 0 chr1 34382670 34382708 -247810956 + (TTG)n Simple_repeat Simple_repeat 1 38 0 1921 120 10 34 chr1 34382709 34383020 -247810644 - AluSq SINE Alu 0 304 1 2443 83 0 3 chr1 34383198 34383499 -247810165 - AluSq SINE Alu -13 300 1 201 176 0 0 chr1 34384237 34384271 -247809393 + T-rich Low_complexity Low_complexity 1 34 0 2504 86 0 0 chr1 34384671 34384973 -247808691 + AluSx SINE Alu 2 303 -9 231 333 75 17 chr1 34385538 34385658 -247808006 - L2 LINE L2 -6 3266 3140 353 174 43 0 chr1 34385682 34385751 -247807913 - LTR37B LTR ERV1 -53 415 344 409 151 58 23 chr1 34386171 34386257 -247807407 + MER103 DNA DNA 34 122 -44 1860 175 133 3 chr1 34386429 34386811 -247806853 - MSTB1 LTR MaLR 0 432 1 1725 139 99 9 chr1 34386811 34386932 -247806732 + MER46B DNA MER2_type 9 118 -2613 1874 166 14 0 chr1 34386932 34387221 -247806443 + AluJo SINE Alu 1 293 -19 1725 139 99 9 chr1 34387221 34387357 -247806307 + MER46B DNA MER2_type 118 178 -2553 1798 171 7 7 chr1 34387357 34387644 -247806020 + AluJb SINE Alu 5 291 -21 1725 139 99 9 chr1 34387644 34387709 -247805955 + MER46B DNA MER2_type 178 236 0 523 153 180 18 chr1 34389135 34389246 -247804418 + MER20 DNA MER1_type 1 129 -90 433 198 36 36 chr1 34389306 34389417 -247804247 + MER5A DNA MER1_type 1 111 -78 2619 47 0 3 chr1 34389417 34389718 -247803946 + AluY SINE Alu 1 300 -11 1734 58 5 5 chr1 34389718 34389926 -247803738 + AluY SINE Alu 83 290 -21 390 94 141 12 chr1 34389947 34390032 -247803632 + MER5B DNA MER1_type 83 178 0 353 165 71 47 chr1 34390096 34390181 -247803483 + MER5A DNA MER1_type 103 189 0 2344 89 10 0 chr1 34390261 34390565 -247803099 + AluSp SINE Alu 1 307 -6 1721 164 10 17 chr1 34390574 34390866 -247802798 + AluJb SINE Alu 1 290 -22 2323 72 45 0 chr1 34390953 34391244 -247802420 + AluY SINE Alu 1 304 -7 2487 60 7 0 chr1 34391248 34391549 -247802115 + AluY SINE Alu 1 303 -8 1137 207 13 13 chr1 34391673 34391900 -247801764 + AluJo SINE Alu 1 227 -85 2185 119 3 10 chr1 34392078 34392389 -247801275 - AluSc SINE Alu 0 309 1 641 207 7 43 chr1 34392389 34392518 -247801146 - FLAM_A SINE Alu -180 131 6 38 39 0 0 chr1 34392548 34392600 -247801064 + AT_rich Low_complexity Low_complexity 1 52 0 672 104 52 17 chr1 34392603 34392776 -247800888 + (TA)n Simple_repeat Simple_repeat 2 180 0 2257 105 7 0 chr1 34393002 34393296 -247800368 + AluSx SINE Alu 1 296 -16 2381 63 0 3 chr1 34393298 34393607 -247800057 + AluY SINE Alu 1 308 0 1751 168 0 11 chr1 34393686 34393972 -247799692 - AluJo SINE Alu -29 283 1 2119 152 0 0 chr1 34394217 34394526 -247799138 - AluSx SINE Alu -3 309 1 212 326 93 17 chr1 34394644 34394816 -247798848 - L2 LINE L2 -399 2915 2731 422 254 208 36 chr1 34394873 34395060 -247798604 + L3 LINE CR1 1163 1316 -261 2305 112 7 0 chr1 34395060 34395365 -247798299 + AluSx SINE Alu 1 307 -5 422 254 208 36 chr1 34395365 34395456 -247798208 + L3 LINE CR1 1316 1489 -88 347 225 23 112 chr1 34445467 34445725 -247747939 + L1MEd LINE L1 797 1031 -5088 1749 165 0 26 chr1 34445769 34446072 -247747592 + AluJo SINE Alu 17 311 -1 394 241 75 8 chr1 34446299 34446428 -247747236 - MIR SINE MIR -58 150 58 349 206 78 71 chr1 34447227 34447368 -247746296 + MIR3 SINE MIR 58 199 -9 298 345 100 22 chr1 34447360 34447747 -247745917 + L2 LINE L2 2593 3099 -173 * 276 296 9 78 chr1 34447884 34447999 -247745665 + MIR SINE MIR 106 212 -50 1049 197 69 26 chr1 34448234 34448539 -247745125 - MER33 DNA MER1_type -6 318 1 235 287 163 31 chr1 34448559 34448688 -247744976 + MIR SINE MIR 85 230 -32 915 287 112 47 chr1 34449225 34449637 -247744027 - L2 LINE L2 -521 2793 2331 1854 158 135 20 chr1 34449637 34449992 -247743672 - MSTD LTR MaLR 0 396 1 915 287 112 47 chr1 34449992 34450160 -247743504 - L2 LINE L2 -983 2331 2175 407 257 30 0 chr1 34451497 34451598 -247742066 + MIR SINE MIR 32 135 -127 2253 81 54 0 chr1 34451972 34452269 -247741395 + AluSq SINE Alu 1 313 0 786 296 137 19 chr1 34452661 34453173 -247740491 + L2 LINE L2 2743 3313 0 422 284 47 16 chr1 34453670 34453797 -247739867 - MIR3 SINE MIR -29 179 49 590 312 195 14 chr1 34453801 34454285 -247739379 - L2 LINE L2 -11 3261 2682 365 273 12 91 chr1 34454298 34454463 -247739201 - L2 LINE L2 -8 3264 3113 211 258 101 90 chr1 34455176 34455354 -247738310 - L2 LINE L2 -144 3128 2949 2501 62 0 0 chr1 34455555 34455863 -247737801 + AluY SINE Alu 1 308 -3 199 309 71 0 chr1 34457607 34457691 -247735973 - MIR3 SINE MIR -34 174 85 2032 114 17 7 chr1 34457848 34458138 -247735526 - AluSx SINE Alu -19 293 1 668 263 74 14 chr1 34458957 34459187 -247734477 - MIR SINE MIR -1 261 18 200 285 200 8 chr1 34459518 34459648 -247734016 - L2 LINE L2 -1 3312 3158 782 264 29 54 chr1 34459893 34460132 -247733532 - MIR SINE MIR -22 240 8 1918 162 0 10 chr1 34460147 34460450 -247733214 - AluJb SINE Alu -12 300 1 263 254 0 0 chr1 34460462 34460521 -247733143 - MIR SINE MIR -69 139 81 446 283 150 17 chr1 34460947 34461127 -247732537 - MIR SINE MIR -10 252 49 715 130 176 0 chr1 34461158 34461289 -247732375 + MER5A DNA MER1_type 1 154 -35 2205 104 27 0 chr1 34461420 34461719 -247731945 - AluSx SINE Alu -5 307 1 1240 178 23 0 chr1 34461724 34461938 -247731726 - MER20 DNA MER1_type 0 219 1 2303 103 6 0 chr1 34461959 34462270 -247731394 - AluSq SINE Alu 0 313 1 214 253 165 13 chr1 34462349 34462428 -247731236 - MIR3 SINE MIR -111 97 7 289 192 23 69 chr1 34462858 34462988 -247730676 + (CAGAGA)n Simple_repeat Simple_repeat 2 125 0 301 354 113 14 chr1 34462995 34463207 -247730457 + L1MEd LINE L1 979 1211 -4908 510 339 90 28 chr1 34463451 34463608 -247730056 - L2 LINE L2 -3 3310 3164 1914 150 0 3 chr1 34463608 34463908 -247729756 + AluJo SINE Alu 1 299 -13 510 339 90 28 chr1 34463908 34464269 -247729395 - L2 LINE L2 -149 3164 2755 2149 125 6 3 chr1 34464316 34464628 -247729036 + AluSq SINE Alu 1 313 0 486 0 0 0 chr1 34464633 34464687 -247728977 + (GAAAA)n Simple_repeat Simple_repeat 3 56 0 207 182 0 0 chr1 34464709 34464742 -247728922 + A-rich Low_complexity Low_complexity 4 36 0 634 331 82 13 chr1 34464742 34465059 -247728605 - L2 LINE L2 -614 2700 2362 408 272 46 33 chr1 34466130 34466303 -247727361 - MIR SINE MIR -24 184 8 396 0 0 0 chr1 34467319 34467363 -247726301 + (CA)n Simple_repeat Simple_repeat 2 45 0 405 294 96 7 chr1 34467722 34467868 -247725796 - MIR3 SINE MIR -7 201 43 1638 110 4 8 chr1 34468840 34469076 -247724588 + AluSx SINE Alu 1 235 -77 6046 57 3 5 chr1 34469076 34469833 -247723831 + L1PA8 LINE L1 5418 6172 0 672 312 24 28 chr1 34469907 34470160 -247723504 + L1MC4a LINE L1 5351 5602 -2206 1543 219 98 41 chr1 34470166 34470788 -247722876 + MLT1E3 LTR MaLR 2 624 0 1782 167 24 0 chr1 34470801 34471088 -247722576 + AluJb SINE Alu 2 295 -17 586 244 35 66 chr1 34471088 34471375 -247722289 + L1MC4a LINE L1 5609 5886 -1922 2022 121 0 0 chr1 34471380 34471660 -247722004 + AluSx SINE Alu 1 280 -32 224 30 30 0 chr1 34471663 34471696 -247721968 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1962 154 7 0 chr1 34471833 34472138 -247721526 + AluSx SINE Alu 1 307 -5 510 227 110 32 chr1 34472416 34472570 -247721094 + MIR SINE MIR 78 243 -19 413 262 27 54 chr1 34472795 34472944 -247720720 - MIR3 SINE MIR -58 150 6 701 318 13 25 chr1 34473944 34474180 -247719484 - MIR SINE MIR 0 262 30 1523 235 127 37 chr1 34474401 34474864 -247718800 - MLT1D LTR MaLR 0 505 1 541 249 116 0 chr1 34475129 34475302 -247718362 + MIR SINE MIR 70 262 0 472 312 235 3 chr1 34475295 34475606 -247718058 - L2 LINE L2 -16 3297 2915 * 899 304 129 33 chr1 34475605 34476272 -247717392 - L2 LINE L2 -352 2962 2232 190 245 0 149 chr1 34476396 34476438 -247717226 - MIR SINE MIR -127 135 113 2617 92 59 15 chr1 34476438 34476828 -247716836 + L1PA11 LINE L1 5768 6174 0 190 245 0 149 chr1 34476828 34476879 -247716785 - MIR SINE MIR -149 113 56 194 349 0 72 chr1 34476927 34477079 -247716585 - L2 LINE L2 -459 2855 2715 350 311 162 0 chr1 34477384 34477532 -247716132 + MIR3 SINE MIR 30 201 -7 310 331 26 45 chr1 34478615 34478769 -247714895 - MIR3 SINE MIR -48 160 10 643 286 101 9 chr1 34478817 34479044 -247714620 + MIR SINE MIR 6 253 -9 283 229 229 0 chr1 34479067 34479172 -247714492 - MIR3 SINE MIR -6 202 74 338 314 34 57 chr1 34479286 34479461 -247714203 - MIR SINE MIR -45 217 47 543 269 19 6 chr1 34479612 34479772 -247713892 + MER103 DNA DNA 3 164 -2 265 311 164 16 chr1 34479889 34480011 -247713653 + MER5A DNA MER1_type 35 174 -15 * 364 296 66 8 chr1 34480009 34480168 -247713496 + MIR SINE MIR 23 190 -61 460 320 13 68 chr1 34480597 34480718 -247712946 + MIR SINE MIR 13 116 -146 2324 95 0 3 chr1 34480718 34481023 -247712641 - AluSx SINE Alu -6 306 3 460 320 13 68 chr1 34481023 34481135 -247712529 + MIR SINE MIR 116 233 -29 878 308 83 10 chr1 34481227 34481689 -247711975 - L2 LINE L2 -189 3083 2585 219 283 113 0 chr1 34481811 34481917 -247711747 - L2 LINE L2 -1005 2309 2192 185 238 48 95 chr1 34482518 34482581 -247711083 + L2 LINE L2 3253 3312 -1 * 526 244 151 7 chr1 34482570 34482792 -247710872 + MIR SINE MIR 7 256 -6 356 350 124 44 chr1 34483087 34483499 -247710165 + L2 LINE L2 2355 2799 -515 * 447 259 63 51 chr1 34483495 34483653 -247710011 - L2 LINE L2 -1 3271 3112 330 363 39 70 chr1 34483755 34484138 -247709526 + L2 LINE L2 2897 3267 -5 254 259 0 0 chr1 34484136 34484194 -247709470 + MIR SINE MIR 97 154 -108 * 272 309 183 0 chr1 34484610 34484736 -247708928 + MIR3 SINE MIR 17 165 -43 231 313 50 0 chr1 34484762 34484842 -247708822 + L2 LINE L2 2973 3056 -216 207 316 0 0 chr1 34485055 34485112 -247708552 - MIR SINE MIR 0 262 206 1344 150 18 9 chr1 34485302 34485528 -247708136 - AluJo SINE Alu -1 311 84 268 331 115 7 chr1 34485563 34485711 -247707953 - MIR SINE MIR -51 211 48 252 305 85 9 chr1 34486169 34486283 -247707381 + MIR SINE MIR 30 161 -101 * 636 255 87 5 chr1 34486266 34486462 -247707202 - MIR SINE MIR -1 261 50 1511 151 0 130 chr1 34486471 34486820 -247706844 - AluJb SINE Alu 0 308 2 321 286 163 0 chr1 34487094 34487192 -247706472 - L2 LINE L2 0 3272 3159 379 316 12 19 chr1 34487200 34487361 -247706303 + MIR SINE MIR 26 184 -63 398 299 32 48 chr1 34487995 34488182 -247705482 - MLT1I LTR MaLR -115 294 111 486 296 70 30 chr1 34488483 34488682 -247704982 - MIR SINE MIR -36 226 20 2045 107 3 16 chr1 34488986 34489296 -247704368 - AluSq SINE Alu -1 312 7 407 257 30 0 chr1 34489673 34489774 -247703890 - MIR SINE MIR -127 135 32 915 287 112 47 chr1 34491111 34491279 -247702385 + L2 LINE L2 2175 2331 -983 1854 158 135 20 chr1 34491279 34491634 -247702030 + MSTD LTR MaLR 1 396 0 915 287 112 47 chr1 34491634 34492046 -247701618 + L2 LINE L2 2331 2793 -521 235 287 163 31 chr1 34492583 34492712 -247700952 - MIR SINE MIR -32 230 85 1049 197 69 26 chr1 34492732 34493037 -247700627 + MER33 DNA MER1_type 1 318 -6 276 296 9 78 chr1 34493272 34493387 -247700277 - MIR SINE MIR -50 212 106 288 348 100 22 chr1 34493524 34493911 -247699753 - L2 LINE L2 -173 3099 2593 * 349 206 78 71 chr1 34493903 34494044 -247699620 - MIR3 SINE MIR -9 199 58 394 241 75 8 chr1 34494844 34494973 -247698691 + MIR SINE MIR 58 202 -58 469 250 80 34 chr1 34495690 34495866 -247697798 + MIR SINE MIR 46 229 -33 525 290 28 7 chr1 34495881 34496026 -247697638 - MIR SINE MIR -4 258 111 408 272 46 33 chr1 34496860 34497033 -247696631 - MIR SINE MIR -24 184 8 396 0 0 0 chr1 34498050 34498094 -247695570 + (CA)n Simple_repeat Simple_repeat 2 45 0 405 294 96 7 chr1 34498454 34498600 -247695064 - MIR3 SINE MIR -7 201 43 255 316 135 15 chr1 34499541 34499674 -247693990 - MIR SINE MIR 0 262 114 373 265 73 73 chr1 34501048 34501252 -247692412 - MIR SINE MIR -28 234 31 248 250 125 18 chr1 34501556 34501668 -247691996 - MIR SINE MIR -55 153 30 254 186 70 47 chr1 34502701 34502787 -247690877 - MER5A DNA MER1_type -22 167 80 424 330 116 9 chr1 34503430 34503654 -247690010 - MIR SINE MIR 0 262 15 331 335 92 37 chr1 34503672 34503890 -247689774 + L3 LINE CR1 1345 1574 -3 300 324 122 0 chr1 34505375 34505514 -247688150 - MIR3 SINE MIR -24 184 29 186 171 0 0 chr1 34507200 34507241 -247686423 + (CA)n Simple_repeat Simple_repeat 2 42 0 201 331 56 0 chr1 34508900 34509042 -247684622 + (CAGAGA)n Simple_repeat Simple_repeat 5 154 0 279 0 0 0 chr1 34510141 34510172 -247683492 + (CA)n Simple_repeat Simple_repeat 1 31 0 301 324 233 28 chr1 34510253 34510540 -247683124 - L2 LINE L2 -13 3259 2914 206 135 27 0 chr1 34512574 34512611 -247681053 + (CACCC)n Simple_repeat Simple_repeat 4 41 0 206 342 0 13 chr1 34514120 34514199 -247679465 - MIR3 SINE MIR -49 159 82 385 295 93 0 chr1 34514285 34514414 -247679250 - MIR SINE MIR -43 219 79 384 381 35 17 chr1 34515279 34515510 -247678154 + MIR SINE MIR 28 262 0 548 309 209 18 chr1 34515977 34516719 -247676945 + L2 LINE L2 1522 2405 -909 284 296 30 44 chr1 34516695 34516830 -247676834 + L2 LINE L2 2951 3083 -189 * 200 276 228 8 chr1 34517042 34517169 -247676495 - L3 LINE CR1 -815 762 608 263 338 62 62 chr1 34517319 34517479 -247676185 - L3 LINE CR1 -1221 356 197 537 226 250 10 chr1 34518047 34518255 -247675409 - MIR SINE MIR -3 259 2 663 281 95 5 chr1 34518655 34518865 -247674799 + MIR SINE MIR 20 248 -14 1786 166 6 16 chr1 34518876 34519247 -247674417 + AluJo SINE Alu 1 368 0 256 331 104 0 chr1 34519254 34519408 -247674256 + L2 LINE L2 2886 3055 -217 204 266 64 32 chr1 34520205 34520299 -247673365 + L2 LINE L2 3142 3238 -34 244 311 48 10 chr1 34520380 34520483 -247673181 + L2 LINE L2 2873 2979 -334 439 197 8 57 chr1 34520594 34520716 -247672948 - MER94 DNA DNA -18 116 1 * 615 256 172 0 chr1 34520716 34520974 -247672690 - MER113 DNA MER1_type? -131 390 88 200 244 0 22 chr1 34521132 34521177 -247672487 - L2 LINE L2 -8 3305 3262 * 616 319 97 0 chr1 34521145 34521361 -247672303 - MIR SINE MIR -14 248 12 210 322 55 62 chr1 34521704 34521850 -247671814 - L2 LINE L2 -136 3136 2992 277 265 71 0 chr1 34522028 34522126 -247671538 - MIR SINE MIR -71 137 33 237 278 167 19 chr1 34524262 34524370 -247669294 - MIR3 SINE MIR -51 157 34 558 346 132 11 chr1 34524793 34525148 -247668516 + L2 LINE L2 2855 3252 -20 660 292 31 16 chr1 34526174 34526366 -247667298 + MIR SINE MIR 68 262 0 276 260 171 10 chr1 34526784 34526887 -247666777 + MIR SINE MIR 37 153 -63 213 313 125 19 chr1 34527420 34527580 -247666084 - MIR3 SINE MIR -22 186 10 24 67 0 0 chr1 34530255 34530300 -247663364 + GC_rich Low_complexity Low_complexity 1 45 0 516 259 212 0 chr1 34531094 34531287 -247662377 - MIR SINE MIR -16 246 13 237 318 0 0 chr1 34531413 34531479 -247662185 + GA-rich Low_complexity Low_complexity 2 67 0 189 74 0 0 chr1 34531848 34531875 -247661789 + (CACCC)n Simple_repeat Simple_repeat 5 31 0 22 35 0 0 chr1 34532132 34532161 -247661503 + GC_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr1 34533152 34533189 -247660475 + GC_rich Low_complexity Low_complexity 1 37 0 401 311 14 5 chr1 34533919 34534062 -247659602 + MIR SINE MIR 17 160 -51 1054 332 44 29 chr1 34534109 34534649 -247659015 + L2 LINE L2 2622 3183 -130 1692 190 0 3 chr1 34534649 34534968 -247658696 - AluSx SINE Alu 0 318 1 1054 332 44 29 chr1 34534968 34535099 -247658565 + L2 LINE L2 3183 3311 -2 247 282 82 12 chr1 34535626 34535711 -247657953 + MIR3 SINE MIR 81 171 -37 2220 83 7 17 chr1 34535931 34536232 -247657432 + AluY SINE Alu 1 298 -13 235 254 14 65 chr1 34536453 34536591 -247657073 + (CAGA)n Simple_repeat Simple_repeat 4 134 0 437 245 16 43 chr1 34536602 34536786 -247656878 + (CAGA)n Simple_repeat Simple_repeat 1 179 0 1781 149 0 14 chr1 34536793 34537075 -247656589 + AluJb SINE Alu 35 312 0 187 391 11 0 chr1 34537385 34537477 -247656187 + L3b LINE CR1 1342 1434 -149 203 245 94 0 chr1 34537516 34537569 -247656095 + MIR SINE MIR 78 135 -73 222 247 31 31 chr1 34538922 34539019 -247654645 + (CAGAGA)n Simple_repeat Simple_repeat 4 100 0 114 51 0 0 chr1 34540085 34540262 -247653402 + GC_rich Low_complexity Low_complexity 1 177 0 186 71 0 0 chr1 34540262 34540290 -247653374 + (G)n Simple_repeat Simple_repeat 1 28 0 206 194 14 56 chr1 34540546 34540618 -247653046 + G-rich Low_complexity Low_complexity 6 74 0 341 207 98 4 chr1 34543232 34543324 -247650340 + MIR3 SINE MIR 67 166 -42 292 80 40 0 chr1 34544274 34544324 -247649340 - L2 LINE L2 0 3313 3262 827 303 132 20 chr1 34544326 34545050 -247648614 + L2 LINE L2 2493 3313 0 556 313 51 10 chr1 34545160 34545355 -247648309 + MIR SINE MIR 20 222 -40 353 307 39 8 chr1 34546373 34546500 -247647164 - MIR SINE MIR -29 233 103 224 250 24 12 chr1 34547301 34547385 -247646279 + (TG)n Simple_repeat Simple_repeat 2 86 0 315 0 0 0 chr1 34547538 34547573 -247646091 + (TG)n Simple_repeat Simple_repeat 1 35 0 28 61 0 0 chr1 34548215 34548264 -247645400 + GC_rich Low_complexity Low_complexity 1 49 0 207 246 31 0 chr1 34548326 34548391 -247645273 + (TG)n Simple_repeat Simple_repeat 2 68 0 204 40 0 0 chr1 34549520 34549545 -247644119 + (CA)n Simple_repeat Simple_repeat 1 25 0 180 331 107 33 chr1 34549982 34550103 -247643561 + L2 LINE L2 3142 3271 -1 865 264 46 84 chr1 34550456 34550872 -247642792 - L2 LINE L2 0 3313 2914 1641 135 8 0 chr1 34551008 34551245 -247642419 + AluJo SINE Alu 1 239 -73 784 205 35 20 chr1 34551552 34551752 -247641912 + MER63A DNA MER1_type 1 203 -7 1885 129 3 20 chr1 34552001 34552303 -247641361 + AluJb SINE Alu 1 297 -15 348 225 129 55 chr1 34552400 34552578 -247641086 + MIR3 SINE MIR 21 208 0 232 324 73 79 chr1 34553625 34553965 -247639699 + L2 LINE L2 2844 3181 -91 2271 109 3 0 chr1 34553965 34554301 -247639363 + AluSq SINE Alu 1 337 0 262 279 0 0 chr1 34554677 34554738 -247638926 + L3b LINE CR1 1337 1397 -186 2442 65 0 0 chr1 34555572 34555880 -247637784 - AluY SINE Alu -3 308 1 311 240 30 49 chr1 34555885 34555988 -247637676 - MIR SINE MIR -63 145 45 1586 269 78 9 chr1 34556170 34556256 -247637408 + L1ME4a LINE L1 5385 5464 -657 216 0 0 0 chr1 34556256 34556280 -247637384 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1586 269 78 9 chr1 34556280 34556850 -247636814 + L1ME4a LINE L1 5464 6086 -35 297 0 0 0 chr1 34556890 34556923 -247636741 + (TG)n Simple_repeat Simple_repeat 1 33 0 521 314 59 13 chr1 34556959 34557195 -247636469 - L2 LINE L2 -196 3076 2830 555 331 59 61 chr1 34557195 34557723 -247635941 - L1MCa LINE L1 -1205 1582 1292 287 0 53 0 chr1 34557896 34557934 -247635730 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 1902 66 0 4 chr1 34557940 34558182 -247635482 - AluSc SINE Alu -38 271 31 1108 255 89 77 chr1 34558192 34558507 -247635157 + L1M4 LINE L1 2973 3283 -2863 2002 154 0 0 chr1 34558507 34558813 -247634851 + AluSx SINE Alu 7 312 0 1108 255 89 77 chr1 34558813 34558977 -247634687 + L1M4 LINE L1 3283 3444 -2702 2057 124 7 0 chr1 34558977 34559275 -247634389 + AluSx SINE Alu 6 305 -7 2010 112 54 0 chr1 34559279 34559573 -247634091 + AluSg SINE Alu 1 310 0 1108 255 89 77 chr1 34559573 34559592 -247634072 + L1M4 LINE L1 3446 3483 -2663 690 333 67 11 chr1 34559593 34559863 -247633801 - L1MEc LINE L1 -2786 3343 3059 1001 196 81 50 chr1 34559863 34560184 -247633480 - L1ME3 LINE L1 -102 6060 5730 647 292 83 9 chr1 34560170 34560519 -247633145 - L1MEc LINE L1 -3257 2872 2498 * 369 354 85 29 chr1 34560527 34560773 -247632891 - L1MEc LINE L1 -4159 2151 1892 287 212 81 10 chr1 34560965 34561064 -247632600 - L1MEc LINE L1 -5045 1074 969 300 53 0 0 chr1 34561073 34561111 -247632553 + (TA)n Simple_repeat Simple_repeat 2 39 0 2043 120 10 0 chr1 34561111 34561402 -247632262 - AluSx SINE Alu -18 294 1 402 380 31 31 chr1 34561408 34561637 -247632027 - L1ME3 LINE L1 0 6162 5934 586 275 12 8 chr1 34561665 34561905 -247631759 - L1ME3 LINE L1 -216 5954 5714 2026 119 0 29 chr1 34562028 34562338 -247631326 - AluJo SINE Alu -11 301 1 375 221 36 46 chr1 34562349 34562544 -247631120 - L1MEc LINE L1 -5221 898 706 * 684 313 53 39 chr1 34562538 34563046 -247630618 - L1ME3 LINE L1 -1163 4983 4463 2188 117 0 0 chr1 34563046 34563346 -247630318 + AluSx SINE Alu 1 300 -12 684 313 53 39 chr1 34563346 34563454 -247630210 - L1ME3 LINE L1 -1683 4463 4358 2453 132 71 20 chr1 34563460 34563968 -247629696 - Tigger3(Golem) DNA MER2_type -9 3020 2487 408 136 0 0 chr1 34563968 34564027 -247629637 + AluJ/FLAM SINE Alu 2 60 -252 969 216 8 49 chr1 34564042 34564287 -247629377 - LTR40a LTR ERVL -52 467 233 2103 161 34 14 chr1 34564296 34564419 -247629245 + MER65A LTR ERV1 1 120 -325 759 213 88 0 chr1 34564419 34564579 -247629085 + FAM SINE Alu 1 174 -1 751 188 0 0 chr1 34564453 34564586 -247629078 + AluJb SINE Alu 171 303 -9 * 2103 161 34 14 chr1 34564579 34564891 -247628773 + MER65A LTR ERV1 120 445 0 694 243 74 11 chr1 34564894 34565083 -247628581 - LTR40a LTR ERVL -318 201 1 297 294 0 28 chr1 34565083 34565192 -247628472 - L1ME3 LINE L1 -1861 4285 4180 1918 146 3 10 chr1 34565206 34565507 -247628157 - AluSx SINE Alu -9 303 5 1936 171 42 23 chr1 34565911 34566255 -247627409 + L1 LINE L1 4921 5278 -868 1966 122 10 10 chr1 34566255 34566567 -247627097 + AluSx SINE Alu 1 312 0 1936 171 42 23 chr1 34566567 34566696 -247626968 + L1 LINE L1 5278 5403 -743 690 206 60 6 chr1 34566720 34566914 -247626750 - MLT2B3 LTR ERVL -250 194 4 241 250 16 16 chr1 34567441 34567505 -247626159 + MIR SINE MIR 30 93 -115 628 255 87 5 chr1 34567538 34567734 -247625930 - MIR SINE MIR -1 261 50 1503 151 0 130 chr1 34567743 34568092 -247625572 - AluJb SINE Alu 0 308 2 315 286 163 0 chr1 34568366 34568464 -247625200 - L2 LINE L2 0 3272 3159 360 279 31 37 chr1 34568472 34568633 -247625031 + MIR SINE MIR 26 184 -63 453 285 26 70 chr1 34569226 34569454 -247624210 - MLT1I LTR MaLR -81 328 111 483 296 70 30 chr1 34569755 34569954 -247623710 - MIR SINE MIR -36 226 20 2405 70 3 10 chr1 34570258 34570572 -247623092 - AluSp SINE Alu -1 312 1 374 294 66 41 chr1 34572548 34572745 -247620919 - MIR SINE MIR -13 249 48 615 226 65 0 chr1 34572836 34572991 -247620673 - MIR SINE MIR -6 256 92 693 334 95 19 chr1 34575079 34575510 -247618154 - L3 LINE CR1 -11 1566 1103 205 265 0 0 chr1 34577109 34577158 -247616506 - MIR SINE MIR -78 130 82 257 188 141 0 chr1 34577931 34577995 -247615669 - MIR SINE MIR -113 149 77 260 324 0 0 chr1 34578146 34578214 -247615450 + L2 LINE L2 3246 3313 0 452 273 52 17 chr1 34579482 34579681 -247613983 - MIR SINE MIR -54 208 4 871 261 6 71 chr1 34579692 34579772 -247613892 + L2 LINE L2 2966 3050 -263 1813 149 34 0 chr1 34579772 34580067 -247613597 - AluJo SINE Alu -7 305 1 871 261 6 71 chr1 34580067 34580297 -247613367 + L2 LINE L2 3050 3256 -57 257 341 0 0 chr1 34580348 34580433 -247613231 - MIR SINE MIR -133 129 45 1657 125 114 11 chr1 34580917 34581197 -247612467 - AluSg1 SINE Alu 0 309 1 252 248 33 91 chr1 34581213 34581334 -247612330 - MIR SINE MIR -65 197 84 423 283 27 16 chr1 34581562 34581739 -247611925 + MIR SINE MIR 18 191 -59 324 269 36 17 chr1 34582261 34582388 -247611276 + MIR SINE MIR 34 161 -61 550 305 76 5 chr1 34583454 34583669 -247609995 + MIR SINE MIR 6 240 -22 357 212 288 8 chr1 34583681 34583799 -247609865 - MIR SINE MIR 0 262 112 180 234 0 0 chr1 34585196 34585243 -247608421 + GA-rich Low_complexity Low_complexity 2 48 0 468 296 70 16 chr1 34585310 34585496 -247608168 + MIR SINE MIR 34 229 -33 386 200 76 38 chr1 34585525 34585630 -247608034 - MIR SINE MIR -105 157 49 217 191 21 0 chr1 34586732 34586779 -247606885 + (TTCA)n Simple_repeat Simple_repeat 1 48 0 564 198 86 8 chr1 34587231 34587402 -247606262 - MIR SINE MIR -62 146 9 516 283 18 74 chr1 34587395 34587678 -247605986 - L2 LINE L2 -85 3187 2921 * 423 176 0 0 chr1 34588102 34588193 -247605471 + (TG)n Simple_repeat Simple_repeat 2 92 0 931 184 12 0 chr1 34590177 34590345 -247603319 - AluSg/x SINE Alu -6 306 137 264 319 22 0 chr1 34590663 34590754 -247602910 + MIR SINE MIR 13 105 -157 651 135 72 0 chr1 34590764 34590875 -247602789 + MLT1D LTR MaLR 1 119 -386 21 36 0 0 chr1 34591037 34591065 -247602599 + AT_rich Low_complexity Low_complexity 1 28 0 387 0 0 0 chr1 34591160 34591203 -247602461 + (TG)n Simple_repeat Simple_repeat 1 43 0 299 205 0 72 chr1 34591242 34591325 -247602339 + HAL1 LINE L1 846 922 -1585 1800 90 6 136 chr1 34591846 34592191 -247601473 + AluSx SINE Alu 1 300 -12 878 279 35 4 chr1 34592259 34592419 -247601245 + MIR SINE MIR 1 173 -89 2166 148 157 7 chr1 34592419 34592858 -247600806 + MLT1D LTR MaLR 1 505 0 878 279 35 4 chr1 34592858 34592951 -247600713 + MIR SINE MIR 173 262 0 1929 149 0 0 chr1 34592980 34593275 -247600389 + AluSx SINE Alu 1 295 -17 642 263 22 45 chr1 34593332 34593511 -247600153 - MLT1J LTR MaLR -325 186 12 1949 135 7 3 chr1 34593577 34593874 -247599790 + AluJb SINE Alu 15 312 0 330 280 8 48 chr1 34593917 34594042 -247599622 - HAL1 LINE L1 -156 2351 2232 476 292 31 15 chr1 34594581 34594776 -247598888 - HAL1 LINE L1 -703 1804 1607 2294 99 0 0 chr1 34594933 34595235 -247598429 - AluSx SINE Alu -8 304 3 183 42 0 0 chr1 34595391 34595415 -247598249 + (TC)n Simple_repeat Simple_repeat 1 24 0 1465 205 0 3 chr1 34595416 34595704 -247597960 - AluSx SINE Alu -19 293 7 413 226 124 49 chr1 34595713 34596019 -247597645 - L1M4 LINE L1 -2845 3301 2973 1884 66 0 4 chr1 34596029 34596271 -247597393 + AluSc SINE Alu 31 271 -38 287 0 53 0 chr1 34596277 34596315 -247597349 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 241 237 0 0 chr1 34596327 34596386 -247597278 - L1M4 LINE L1 -3795 2351 2293 1788 186 3 0 chr1 34596451 34596762 -247596902 - AluJo SINE Alu 0 312 1 467 298 145 60 chr1 34597102 34597976 -247595688 - L1M4 LINE L1 -2791 3355 2407 417 231 10 10 chr1 34597979 34598083 -247595581 - MLT1J LTR MaLR 0 511 408 551 289 54 18 chr1 34598089 34598422 -247595242 + LTR33 LTR ERVL 104 512 -9 2988 148 2 8 chr1 34598872 34599358 -247594306 - MER31A LTR ERV1 -2 483 1 324 0 0 0 chr1 34599426 34599462 -247594202 + (TTTC)n Simple_repeat Simple_repeat 1 36 0 2135 133 0 0 chr1 34599462 34599953 -247593711 - AluSg SINE Alu 0 491 1 1772 117 7 11 chr1 34600012 34600286 -247593378 - AluSg SINE Alu -1 309 37 740 141 0 62 chr1 34600286 34600414 -247593250 + AluJb SINE Alu 191 310 -2 181 292 14 0 chr1 34600495 34600567 -247593097 + MIR SINE MIR 28 100 -162 1541 138 17 59 chr1 34601003 34601293 -247592371 + AluJb SINE Alu 27 304 -8 268 248 72 124 chr1 34601567 34601720 -247591944 + MIR SINE MIR 20 164 -98 378 266 26 9 chr1 34601949 34602062 -247591602 + MIR SINE MIR 50 164 -98 1194 200 68 4 chr1 34602086 34602366 -247591298 - MER66B LTR ERV1 0 486 189 202 228 18 0 chr1 34602656 34602713 -247590951 + GA-rich Low_complexity Low_complexity 2 59 0 185 378 0 17 chr1 34602857 34602976 -247590688 + MIR SINE MIR 122 238 -24 331 240 10 42 chr1 34603305 34603401 -247590263 - L2 LINE L2 -218 3054 2962 314 280 124 83 chr1 34603443 34603661 -247590003 + MIR SINE MIR 35 261 -1 493 229 177 17 chr1 34603720 34603895 -247589769 - MIR SINE MIR -12 250 48 2782 69 41 24 chr1 34604226 34604415 -247589249 + MER41A LTR ERV1 1 185 -369 2255 68 0 42 chr1 34604415 34604726 -247588938 + AluY SINE Alu 4 301 -10 2782 69 41 24 chr1 34604726 34604954 -247588710 + MER41A LTR ERV1 185 425 -129 2323 91 0 0 chr1 34604954 34605261 -247588403 - AluSg SINE Alu 0 310 4 1267 101 11 0 chr1 34605261 34605450 -247588214 - MER41A LTR ERV1 -363 191 1 477 108 0 0 chr1 34605470 34605544 -247588120 - Alu SINE Alu -236 75 2 902 121 0 0 chr1 34605545 34605685 -247587979 + MER41B LTR ERV1 496 635 0 193 320 102 16 chr1 34606318 34606446 -247587218 - L2 LINE L2 0 3313 3175 1971 124 10 3 chr1 34607313 34607611 -247586053 + AluJo SINE Alu 1 300 -12 216 294 15 0 chr1 34608094 34608162 -247585502 + G-rich Low_complexity Low_complexity 3 71 0 206 238 125 0 chr1 34608697 34608777 -247584887 - MIR SINE MIR -72 136 47 231 344 43 0 chr1 34608889 34608982 -247584682 + MIR SINE MIR 87 183 -79 243 180 0 12 chr1 34611195 34611256 -247582408 - MIR SINE MIR -78 130 73 1822 224 112 19 chr1 34611897 34612513 -247581151 + L2 LINE L2 2175 2847 -467 1857 141 10 3 chr1 34612593 34612883 -247580781 - AluJb SINE Alu -20 292 1 462 188 130 51 chr1 34612883 34613021 -247580643 + L2 LINE L2 3165 3313 0 563 258 140 27 chr1 34613042 34613263 -247580401 + MIR SINE MIR 15 260 -2 571 268 193 37 chr1 34613281 34613743 -247579921 + L2 LINE L2 2252 2785 -529 462 278 219 22 chr1 34613834 34614154 -247579510 + L2 LINE L2 2926 3308 -5 297 68 0 0 chr1 34614665 34614709 -247578955 + (GA)n Simple_repeat Simple_repeat 1 44 0 1619 161 17 17 chr1 34614848 34615140 -247578524 + AluJo SINE Alu 15 306 -6 249 263 0 75 chr1 34615375 34615455 -247578209 - L2 LINE L2 0 3313 3240 22 0 0 0 chr1 34616259 34616281 -247577383 + AT_rich Low_complexity Low_complexity 1 22 0 2169 99 3 26 chr1 34616285 34616589 -247577075 + AluSx SINE Alu 1 297 -15 430 323 62 6 chr1 34617044 34617205 -247576459 + L2 LINE L2 3072 3241 -31 738 212 0 15 chr1 34619261 34619393 -247574271 - FLAM_A SINE Alu 0 133 4 204 218 0 18 chr1 34619516 34619571 -247574093 + (CAA)n Simple_repeat Simple_repeat 2 55 0 492 284 164 0 chr1 34620022 34620223 -247573441 - MIR SINE MIR -9 253 20 263 287 30 20 chr1 34620262 34620363 -247573301 - MIR SINE MIR -91 117 16 240 250 87 33 chr1 34620394 34620486 -247573178 + L2 LINE L2 3169 3265 -7 276 30 0 0 chr1 34620740 34620773 -247572891 + (CA)n Simple_repeat Simple_repeat 2 34 0 287 342 26 8 chr1 34621225 34621342 -247572322 + L2 LINE L2 2686 2804 -510 744 81 0 0 chr1 34621965 34622064 -247571600 - AluSg/x SINE Alu 0 310 212 362 330 157 8 chr1 34622514 34622984 -247570680 + L2 LINE L2 2509 3083 -189 189 171 0 0 chr1 34623758 34623793 -247569871 + (TTA)n Simple_repeat Simple_repeat 2 36 0 250 336 44 35 chr1 34624287 34624400 -247569264 + L2 LINE L2 3159 3272 0 195 267 60 60 chr1 34624689 34624839 -247568825 + MIR3 SINE MIR 22 171 -37 * 785 315 30 4 chr1 34624824 34625059 -247568605 + MIR SINE MIR 9 249 -13 195 42 0 0 chr1 34626945 34626969 -247566695 + (T)n Simple_repeat Simple_repeat 1 24 0 307 232 36 94 chr1 34627180 34627318 -247566346 + L2 LINE L2 2384 2513 -801 219 239 0 0 chr1 34627323 34627369 -247566295 + L2 LINE L2 3266 3311 -2 288 310 9 26 chr1 34628815 34628928 -247564736 + MIR3 SINE MIR 55 165 -43 191 146 24 0 chr1 34629491 34629532 -247564132 + (CA)n Simple_repeat Simple_repeat 1 42 0 23 0 0 0 chr1 34629662 34629685 -247563979 + GC_rich Low_complexity Low_complexity 1 23 0 219 314 67 19 chr1 34629749 34629854 -247563810 + MIR SINE MIR 31 140 -68 347 311 54 75 chr1 34630145 34630425 -247563239 - L2 LINE L2 -93 3179 2906 281 143 36 0 chr1 34631139 34631195 -247562469 + G-rich Low_complexity Low_complexity 3 60 0 291 283 35 13 chr1 34631275 34631371 -247562293 + MIR SINE MIR 48 145 -63 405 311 76 54 chr1 34633231 34633601 -247560063 + L2 LINE L2 2600 2977 -337 388 345 132 15 chr1 34633673 34633998 -247559666 + L2 LINE L2 2951 3313 0 253 248 0 124 chr1 34634114 34634219 -247559445 + MIR SINE MIR 45 136 -72 235 275 22 22 chr1 34637317 34637408 -247556256 + GA-rich Low_complexity Low_complexity 4 94 0 216 322 0 11 chr1 34638010 34638100 -247555564 - L3b LINE CR1 -347 1236 1148 874 233 63 111 chr1 34638817 34639341 -247554323 - L2 LINE L2 0 3313 2815 291 260 13 13 chr1 34640344 34640421 -247553243 - Charlie4 DNA MER1_type -1 1960 1884 325 297 151 26 chr1 34640556 34640790 -247552874 - MIR SINE MIR 0 262 5 680 286 173 17 chr1 34640909 34641325 -247552339 + L3 LINE CR1 786 1266 -311 247 271 17 0 chr1 34641797 34641856 -247551808 - L2 LINE L2 -3 3269 3210 1809 164 30 7 chr1 34642642 34642947 -247550717 - AluJo SINE Alu 0 312 1 440 261 35 70 chr1 34642947 34643037 -247550627 - MIR SINE MIR -64 198 106 2075 137 0 0 chr1 34643037 34643336 -247550328 + AluSx SINE Alu 5 303 -9 440 261 35 70 chr1 34643336 34643444 -247550220 - MIR SINE MIR -156 106 7 226 247 0 82 chr1 34643532 34643617 -247550047 + MIR SINE MIR 73 150 -112 183 213 0 43 chr1 34643999 34644046 -247549618 + L2 LINE L2 3195 3239 -33 2076 98 11 11 chr1 34644065 34644385 -247549279 - AluSx SINE Alu 0 320 1 322 275 82 4 chr1 34644541 34644657 -247549007 + MIR SINE MIR 46 170 -38 467 317 17 39 chr1 34645450 34645630 -247548034 + MIR SINE MIR 61 236 -26 866 238 73 5 chr1 34645684 34645890 -247547774 - MIR SINE MIR -39 223 4 952 257 160 28 chr1 34645891 34646315 -247547349 + L2 LINE L2 2834 3313 0 604 313 92 5 chr1 34647166 34647383 -247546281 + MIR SINE MIR 20 255 -7 226 414 51 0 chr1 34648236 34648393 -247545271 - MIR SINE MIR -7 255 91 201 276 35 17 chr1 34648530 34648588 -247545076 - MIR SINE MIR -133 129 71 220 289 40 81 chr1 34648836 34648985 -247544679 + MIR3 SINE MIR 33 175 -33 988 179 111 11 chr1 34649337 34649527 -247544137 - MER3 DNA MER1_type 0 209 1 404 256 131 7 chr1 34649610 34649747 -247543917 + MIR SINE MIR 109 262 0 279 224 45 15 chr1 34651904 34651971 -247541693 - L2 LINE L2 -39 3274 3206 562 284 34 64 chr1 34651975 34652211 -247541453 + MIR SINE MIR 34 262 0 424 256 74 8 chr1 34652321 34652442 -247541222 - MIR3 SINE MIR -78 130 2 200 356 22 0 chr1 34653384 34653474 -247540190 - MIR SINE MIR -84 124 33 379 345 104 66 chr1 34653535 34654094 -247539570 - L2 LINE L2 -3 3310 2774 2283 103 0 0 chr1 34654094 34654395 -247539269 + AluSx SINE Alu 1 301 -11 216 67 0 0 chr1 34654401 34654431 -247539233 + (CA)n Simple_repeat Simple_repeat 2 31 0 379 345 104 66 chr1 34654431 34654751 -247538913 - L2 LINE L2 -543 2770 2365 895 253 64 0 chr1 34654965 34655198 -247538466 + MIR SINE MIR 14 261 -1 223 339 54 33 chr1 34657075 34657213 -247536451 - MIR SINE MIR -71 137 14 387 265 82 0 chr1 34660509 34660607 -247533057 + MIR SINE MIR 38 143 -119 276 329 70 35 chr1 34660818 34660961 -247532703 + MIR SINE MIR 113 260 -2 271 225 171 9 chr1 34661200 34661311 -247532353 - MIR3 SINE MIR -70 138 10 428 257 29 14 chr1 34662384 34662524 -247531140 - MIR3 SINE MIR -47 161 20 427 340 50 22 chr1 34664508 34664856 -247528808 - L2 LINE L2 -235 3037 2684 187 292 31 0 chr1 34665246 34665311 -247528353 - MIR SINE MIR -63 145 79 338 230 31 152 chr1 34665725 34665806 -247527858 - L2 LINE L2 0 3272 3183 2217 89 0 3 chr1 34665806 34666099 -247527565 + AluSx SINE Alu 1 292 -20 586 92 0 0 chr1 34666023 34666100 -247527564 + AluSg/x SINE Alu 215 323 0 190 94 0 0 chr1 34666100 34666132 -247527532 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 338 230 31 152 chr1 34666132 34666239 -247527425 - L2 LINE L2 -88 3184 3105 207 204 0 0 chr1 34666469 34666513 -247527151 + (CA)n Simple_repeat Simple_repeat 1 44 0 251 252 26 87 chr1 34667297 34667412 -247526252 - MIR SINE MIR -70 138 31 316 258 142 0 chr1 34670672 34670795 -247522869 - MIR3 SINE MIR -20 188 48 501 319 59 15 chr1 34671663 34671867 -247521797 + MIR SINE MIR 50 262 0 679 277 94 9 chr1 34672565 34672778 -247520886 - MIR SINE MIR -30 232 2 200 302 137 33 chr1 34673965 34674147 -247519517 + L2 LINE L2 2368 2568 -746 266 314 28 15 chr1 34674377 34674554 -247519110 + L2 LINE L2 2804 2978 -294 848 185 22 6 chr1 34676625 34676803 -247516861 + L1MA7 LINE L1 6111 6291 0 655 289 78 4 chr1 34677030 34677409 -247516255 + MER115 DNA AcHobo 9 455 -238 836 156 101 11 chr1 34677451 34677630 -247516034 + MIR SINE MIR 68 262 0 190 245 151 65 chr1 34680364 34680503 -247513161 - L3 LINE CR1 -69 1508 1358 193 329 95 15 chr1 34680925 34681062 -247512602 - L3b LINE CR1 -136 1447 1300 421 284 35 18 chr1 34681089 34681258 -247512406 - MIR SINE MIR -17 245 74 227 217 72 0 chr1 34682162 34682231 -247511433 - MIR SINE MIR -110 152 79 235 293 24 36 chr1 34682469 34682636 -247511028 + C-rich Low_complexity Low_complexity 3 167 0 619 290 21 86 chr1 34685067 34685346 -247508318 + MIR SINE MIR 2 262 0 247 281 185 8 chr1 34685759 34685885 -247507779 - MIR SINE MIR -62 146 21 184 284 15 15 chr1 34686410 34686477 -247507187 + L2 LINE L2 3206 3272 0 276 178 41 41 chr1 34686860 34686933 -247506731 - MIR SINE MIR -109 153 81 576 291 107 61 chr1 34687620 34687777 -247505887 - L1ME4a LINE L1 -4 6117 5969 2081 97 19 16 chr1 34687777 34688085 -247505579 - AluSc SINE Alu 0 309 1 576 291 107 61 chr1 34688085 34688452 -247505212 - L1ME4a LINE L1 -152 5969 5569 497 263 226 0 chr1 34688559 34688745 -247504919 + MIR SINE MIR 21 248 -14 216 0 0 0 chr1 34688773 34688797 -247504867 + (TCCCC)n Simple_repeat Simple_repeat 2 25 0 433 214 71 0 chr1 34688973 34689071 -247504593 + L2 LINE L2 3209 3313 0 264 271 110 34 chr1 34689706 34689824 -247503840 - MIR SINE MIR -91 171 45 260 290 214 0 chr1 34690348 34690479 -247503185 + MIR SINE MIR 83 241 -21 1059 201 11 0 chr1 34690591 34690765 -247502899 + MER45A DNA AcHobo 3 178 0 290 280 10 10 chr1 34691321 34691460 -247502204 + CT-rich Low_complexity Low_complexity 1 139 0 455 340 42 5 chr1 34691982 34692173 -247501491 - MIR SINE MIR -43 219 22 351 271 83 14 chr1 34692252 34692396 -247501268 + MIR3 SINE MIR 43 196 -12 235 325 25 12 chr1 34692457 34692537 -247501127 + MIR3 SINE MIR 8 88 -120 250 318 70 8 chr1 34693561 34693690 -247499974 + MIR SINE MIR 37 173 -89 497 252 43 0 chr1 34693980 34694095 -247499569 + L2 LINE L2 3141 3260 -12 2295 79 0 0 chr1 34695158 34695448 -247498216 + AluSx SINE Alu 1 290 -22 691 293 62 4 chr1 34695532 34695774 -247497890 - MIR SINE MIR -1 261 6 259 304 43 9 chr1 34695899 34696014 -247497650 + L1ME4a LINE L1 5998 6116 -5 425 247 27 97 chr1 34696395 34696695 -247496969 + L1ME LINE L1 753 1031 -5088 1733 151 0 27 chr1 34696739 34697031 -247496633 + AluJo SINE Alu 17 300 -12 379 171 0 23 chr1 34697031 34697119 -247496545 + GA-rich Low_complexity Low_complexity 1 86 0 544 200 49 57 chr1 34697124 34697355 -247496309 + L1ME LINE L1 1046 1279 -4850 1096 207 15 49 chr1 34697396 34697662 -247496002 - MIR SINE MIR 0 262 6 763 331 88 74 chr1 34697675 34698242 -247495422 + L1ME LINE L1 1385 1966 -4344 2130 109 3 10 chr1 34698242 34698555 -247495109 - AluY SINE Alu 0 311 1 763 331 88 74 chr1 34698555 34698716 -247494948 + L1ME LINE L1 1966 2123 -4187 1670 168 16 16 chr1 34698716 34699019 -247494645 + AluJo SINE Alu 1 303 -9 908 276 54 27 chr1 34699027 34699677 -247493987 + L1ME LINE L1 2096 2770 -3359 1397 159 110 33 chr1 34699677 34699820 -247493844 - MER33 DNA MER1_type -2261 324 193 2014 102 0 33 chr1 34699820 34700125 -247493539 - AluSg SINE Alu -15 295 1 1397 159 110 33 chr1 34700125 34700282 -247493382 - MER33 DNA MER1_type -2392 193 1 908 276 54 27 chr1 34700282 34700375 -247493289 + L1ME LINE L1 2770 2859 -3270 1905 113 35 7 chr1 34700378 34700661 -247493003 + AluSx SINE Alu 1 291 -21 678 168 0 0 chr1 34700661 34700780 -247492884 + MER49 LTR ERV1 188 306 -617 1506 269 99 70 chr1 34701468 34702892 -247490772 + L1ME LINE L1 2857 4321 -1808 984 248 72 46 chr1 34702912 34702936 -247490728 + L1ME LINE L1 5300 5322 -823 1862 92 28 0 chr1 34702936 34703185 -247490479 + AluSq SINE Alu 1 256 -57 984 248 72 46 chr1 34703185 34703635 -247490029 + L1ME LINE L1 5322 5786 -359 756 215 34 17 chr1 34703644 34703821 -247489843 + MIR SINE MIR 71 250 -12 180 77 0 0 chr1 34704088 34704114 -247489550 + (TCCCC)n Simple_repeat Simple_repeat 4 29 0 577 260 20 60 chr1 34704265 34704377 -247489287 + MIR SINE MIR 48 150 -112 1865 154 20 0 chr1 34704377 34704670 -247488994 - AluJb SINE Alu -13 299 1 577 260 20 60 chr1 34704670 34704757 -247488907 + MIR SINE MIR 150 239 -23 198 267 0 0 chr1 34705136 34705181 -247488483 - MIR SINE MIR -110 152 108 1906 128 47 3 chr1 34705212 34705509 -247488155 + AluSx SINE Alu 1 310 -2 656 345 40 0 chr1 34706085 34706334 -247487330 - MIR SINE MIR -2 260 2 484 284 77 24 chr1 34706583 34706752 -247486912 + MIR SINE MIR 61 238 -24 198 257 27 68 chr1 34706806 34706880 -247486784 + MIR SINE MIR 21 91 -171 381 237 70 18 chr1 34707114 34707228 -247486436 + MIR SINE MIR 72 191 -71 615 189 85 57 chr1 34707254 34707287 -247486377 - MIR SINE MIR -13 249 218 2171 94 17 0 chr1 34707287 34707585 -247486079 - AluSc SINE Alu -6 303 1 615 189 85 57 chr1 34707585 34707763 -247485901 - MIR SINE MIR -44 218 32 257 251 51 4 chr1 34709724 34709816 -247483848 - MIR SINE MIR -71 137 44 180 0 0 0 chr1 34710333 34710353 -247483311 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 3248 94 2 2 chr1 34710355 34710802 -247482862 - L1PA13 LINE L1 -11 6152 5706 252 222 0 89 chr1 34710989 34711079 -247482585 - HAL1 LINE L1 -163 2344 2263 198 0 0 0 chr1 34711122 34711144 -247482520 + (TA)n Simple_repeat Simple_repeat 2 23 0 2089 120 0 0 chr1 34711144 34711439 -247482225 - AluSg SINE Alu -15 295 1 27 0 0 0 chr1 34711442 34711469 -247482195 + AT_rich Low_complexity Low_complexity 1 27 0 225 316 81 38 chr1 34711498 34711707 -247481957 - HAL1b LINE L1 -418 930 713 1754 154 37 10 chr1 34711781 34712080 -247481584 - AluJo SINE Alu -5 307 1 314 293 24 0 chr1 34712172 34712254 -247481410 + L1ME3A LINE L1 5792 5875 -295 541 200 8 8 chr1 34712259 34712384 -247481280 + L1MC3 LINE L1 7673 7785 0 596 204 74 113 chr1 34712688 34712919 -247480745 - MIR SINE MIR 0 262 41 2187 116 7 0 chr1 34712954 34713264 -247480400 - AluSx SINE Alu 0 312 1 2060 111 44 3 chr1 34713437 34713734 -247479930 - AluSq SINE Alu -4 309 1 431 303 133 16 chr1 34713734 34714051 -247479613 - L1M4 LINE L1 -1316 4830 4477 1628 127 33 53 chr1 34714314 34714613 -247479051 - AluSg SINE Alu -17 293 1 948 184 0 0 chr1 34714629 34714787 -247478877 + FRAM SINE Alu 1 153 -23 21 71 0 0 chr1 34715092 34715134 -247478530 + AT_rich Low_complexity Low_complexity 1 42 0 1127 278 16 91 chr1 34715290 34715343 -247478321 - MLT1K LTR MaLR -111 477 422 2111 119 0 20 chr1 34715343 34715646 -247478018 + AluSg SINE Alu 1 297 -13 1371 180 39 62 chr1 34715653 34715791 -247477873 + AluJb SINE Alu 1 141 -171 2196 67 0 51 chr1 34715791 34716107 -247477557 + AluY SINE Alu 1 300 -11 1787 67 0 0 chr1 34716108 34716331 -247477333 + AluSp SINE Alu 86 308 -5 1371 180 39 62 chr1 34716331 34716496 -247477168 + AluJb SINE Alu 140 299 -13 2288 82 3 3 chr1 34716496 34716800 -247476864 + AluY SINE Alu 1 304 -7 1127 278 16 91 chr1 34716800 34716820 -247476844 - MLT1K LTR MaLR -171 417 397 1237 173 209 8 chr1 34716820 34717069 -247476595 - AluJo SINE Alu -2 300 2 1127 278 16 91 chr1 34717069 34717482 -247476182 - MLT1K LTR MaLR -191 397 18 1601 157 10 43 chr1 34717576 34717875 -247475789 - AluJo SINE Alu -23 289 1 2342 63 0 3 chr1 34718053 34718352 -247475312 + AluY SINE Alu 1 298 -13 1126 216 194 58 chr1 34718373 34718484 -247475180 + L2 LINE L2 2402 2497 -817 1722 152 0 17 chr1 34718484 34718786 -247474878 - AluJb SINE Alu -5 307 11 1126 216 194 58 chr1 34718786 34719122 -247474542 + L2 LINE L2 2497 2910 -404 204 179 0 0 chr1 34719244 34719283 -247474381 + (CATATA)n Simple_repeat Simple_repeat 3 41 0 212 319 196 22 chr1 34719694 34719832 -247473832 - MIR SINE MIR -42 220 59 251 125 42 0 chr1 34719935 34719983 -247473681 + CT-rich Low_complexity Low_complexity 3 52 0 1319 139 24 36 chr1 34719983 34720235 -247473429 - AluJb SINE Alu -5 307 59 1331 127 0 42 chr1 34720368 34720604 -247473060 - AluJo SINE Alu 0 312 87 243 182 280 6 chr1 34720781 34720878 -247472786 + MIR SINE MIR 32 147 -63 207 0 0 0 chr1 34721050 34721073 -247472591 + (T)n Simple_repeat Simple_repeat 1 23 0 1773 131 84 0 chr1 34721330 34721604 -247472060 + AluSx SINE Alu 1 297 -15 778 191 11 49 chr1 34721689 34721838 -247471826 + L1M4 LINE L1 4907 5046 -1100 2136 102 3 0 chr1 34721838 34722132 -247471532 + AluSq SINE Alu 1 295 -18 778 191 11 49 chr1 34722132 34722193 -247471471 + L1M4 LINE L1 5046 5108 -1038 875 118 0 0 chr1 34722193 34722312 -247471352 + FLAM_C SINE Alu 1 119 -24 27 49 0 0 chr1 34722312 34722353 -247471311 + AT_rich Low_complexity Low_complexity 1 41 0 307 262 0 87 chr1 34722393 34722496 -247471168 - L1MC4 LINE L1 -1339 6703 6610 207 162 0 0 chr1 34722505 34722542 -247471122 + (TATATG)n Simple_repeat Simple_repeat 2 38 0 419 234 0 3 chr1 34722543 34722632 -247471032 + AluJ/FLAM SINE Alu 1 68 -234 335 179 119 0 chr1 34722666 34722733 -247470931 - tRNA-Asp-GAC tRNA tRNA 0 75 1 2053 117 0 0 chr1 34722760 34723097 -247470567 - AluSx SINE Alu 0 337 1 1514 154 46 0 chr1 34723123 34723403 -247470261 - AluJb SINE Alu 0 302 11 2371 52 0 0 chr1 34723448 34723739 -247469925 + AluY SINE Alu 1 291 -20 692 170 0 0 chr1 34723748 34723860 -247469804 - FLAM_C SINE Alu -30 113 2 1987 143 0 0 chr1 34723888 34724182 -247469482 + AluJb SINE Alu 1 294 -18 1303 199 30 33 chr1 34724225 34724527 -247469137 + AluJo SINE Alu 1 301 -11 574 222 85 23 chr1 34724722 34724826 -247468838 - MIR SINE MIR -2 260 139 1624 174 13 10 chr1 34724826 34725125 -247468539 - AluJo SINE Alu -7 305 6 574 222 85 23 chr1 34725125 34725196 -247468468 - MIR SINE MIR -123 139 74 295 162 0 29 chr1 34725240 34725308 -247468356 + Alu SINE Alu 235 300 0 2203 98 3 3 chr1 34725418 34725725 -247467939 + AluSp SINE Alu 1 307 -6 278 297 22 16 chr1 34725835 34725946 -247467718 + MIR SINE MIR 62 172 -36 795 171 0 0 chr1 34726005 34726134 -247467530 - FLAM_C SINE Alu -4 129 1 21 0 0 0 chr1 34726142 34726163 -247467501 + AT_rich Low_complexity Low_complexity 1 21 0 2315 81 0 3 chr1 34726170 34726477 -247467187 + AluSg SINE Alu 1 306 -4 3475 129 51 18 chr1 34726477 34726979 -247466685 + Tigger1 DNA MER2_type 66 591 -1827 1935 119 42 0 chr1 34726979 34727265 -247466399 - AluSp SINE Alu -15 298 1 3475 129 51 18 chr1 34727265 34727334 -247466330 + Tigger1 DNA MER2_type 591 656 -1762 816 71 143 0 chr1 34727342 34727468 -247466196 + AluY SINE Alu 168 311 0 730 123 0 0 chr1 34727468 34727574 -247466090 + Tigger1 DNA MER2_type 651 756 -1662 2071 111 7 0 chr1 34727598 34727887 -247465777 + AluSx SINE Alu 1 291 -21 1317 209 21 3 chr1 34727917 34728204 -247465460 + AluJo SINE Alu 1 292 -20 2239 68 0 14 chr1 34728207 34728499 -247465165 + AluY SINE Alu 5 292 -19 706 102 51 8 chr1 34728503 34728621 -247465043 + AluSq/x SINE Alu 1 123 -189 186 43 0 0 chr1 34729063 34729086 -247464578 + (TG)n Simple_repeat Simple_repeat 2 24 0 260 322 161 8 chr1 34729797 34729915 -247463749 + MIR SINE MIR 16 151 -57 2064 102 0 0 chr1 34730379 34730654 -247463010 + AluSq SINE Alu 9 283 -30 231 227 0 0 chr1 34730823 34730867 -247462797 + MER46C DNA MER2_type 3 46 -292 816 163 8 0 chr1 34730871 34731000 -247462664 + FLAM_C SINE Alu 2 131 -12 791 221 52 41 chr1 34731070 34731334 -247462330 + MER46C DNA MER2_type 59 325 -13 1232 172 48 15 chr1 34731334 34731688 -247461976 + MER106B DNA MER1_type 1 402 -657 799 125 153 23 chr1 34731693 34731909 -247461755 + MER106B DNA MER1_type 554 797 -262 1952 127 3 3 chr1 34731911 34732210 -247461454 + AluSx SINE Alu 1 299 -13 1895 127 3 7 chr1 34732249 34732549 -247461115 + AluSx SINE Alu 1 299 -13 804 123 0 0 chr1 34732549 34732663 -247461001 - AluJo/FLAM SINE Alu -198 114 1 1425 174 19 0 chr1 34732671 34732930 -247460734 - AluJb SINE Alu -16 296 33 189 0 0 0 chr1 34733001 34733022 -247460642 + (T)n Simple_repeat Simple_repeat 1 21 0 537 221 326 11 chr1 34733153 34733343 -247460321 + MIR SINE MIR 13 262 0 2273 75 0 10 chr1 34733386 34733680 -247459984 + AluY SINE Alu 1 291 -20 1913 132 3 0 chr1 34733684 34733971 -247459693 + AluSx SINE Alu 1 288 -24 2734 98 19 0 chr1 34733971 34734350 -247459314 + Tigger1 DNA MER2_type 872 1257 -1161 198 0 0 0 chr1 34734350 34734372 -247459292 + (TA)n Simple_repeat Simple_repeat 2 23 0 2041 113 3 3 chr1 34734372 34734665 -247458999 - AluSq SINE Alu -20 293 1 395 108 0 206 chr1 34734665 34734767 -247458897 + Tigger1 DNA MER2_type 1378 1458 -960 4034 128 68 78 chr1 34734767 34735085 -247458579 + Tigger1 DNA MER2_type 1576 1895 -523 1643 148 53 7 chr1 34735085 34735368 -247458296 + AluJb SINE Alu 1 296 -16 246 62 0 0 chr1 34735368 34735400 -247458264 + (CATA)n Simple_repeat Simple_repeat 4 35 0 4034 128 68 78 chr1 34735400 34735426 -247458238 + Tigger1 DNA MER2_type 1894 1919 -499 1718 156 10 10 chr1 34735426 34735714 -247457950 - AluJo SINE Alu -23 289 2 4034 128 68 78 chr1 34735714 34736029 -247457635 + Tigger1 DNA MER2_type 1919 2235 -183 1972 97 0 15 chr1 34736029 34736298 -247457366 + AluSg SINE Alu 1 265 -45 4034 128 68 78 chr1 34736298 34736315 -247457349 + Tigger1 DNA MER2_type 2235 2251 -167 207 0 0 0 chr1 34736315 34736338 -247457326 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 4034 128 68 78 chr1 34736338 34736507 -247457157 + Tigger1 DNA MER2_type 2251 2417 -1 279 208 0 0 chr1 34736510 34736563 -247457101 + MIR SINE MIR 210 262 0 667 254 37 26 chr1 34736665 34736854 -247456810 - MLT1L LTR MaLR -322 293 103 797 106 8 16 chr1 34737201 34737324 -247456340 - FLAM_A SINE Alu 0 142 21 202 114 0 29 chr1 34737728 34737763 -247455901 + MIR SINE MIR 117 150 -112 563 271 0 0 chr1 34737805 34737923 -247455741 - L2 LINE L2 -1 3271 3154 944 104 8 15 chr1 34737984 34738118 -247455546 - FLAM_C SINE Alu 0 133 1 222 184 0 20 chr1 34738120 34738144 -247455520 + CT-rich Low_complexity Low_complexity 1 24 -24 1486 167 40 47 chr1 34738144 34738443 -247455221 - AluJb SINE Alu -15 297 1 222 184 0 20 chr1 34738443 34738467 -247455197 + CT-rich Low_complexity Low_complexity 24 48 0 203 329 12 37 chr1 34738508 34738590 -247455074 + MIR SINE MIR 38 117 -91 1953 75 65 4 chr1 34738632 34738910 -247454754 - AluSq SINE Alu -18 295 1 1933 75 25 7 chr1 34738944 34739256 -247454408 + AluSx SINE Alu 1 317 0 2092 104 3 0 chr1 34739472 34739761 -247453903 - AluSx SINE Alu -22 290 1 546 216 8 64 chr1 34739882 34740007 -247453657 - L2 LINE L2 -9 3304 3187 462 239 124 104 chr1 34740015 34740174 -247453490 - Charlie8 DNA MER1_type -53 288 121 2119 100 24 0 chr1 34740174 34740465 -247453199 - AluSg SINE Alu -12 298 1 462 239 124 104 chr1 34740465 34740564 -247453100 - Charlie8 DNA MER1_type -220 121 25 36 44 0 15 chr1 34740640 34740677 -247452987 + AT_rich Low_complexity Low_complexity 1 38 -29 2055 113 0 10 chr1 34740677 34740977 -247452687 - AluSx SINE Alu -15 297 1 36 44 0 15 chr1 34740977 34741007 -247452657 + AT_rich Low_complexity Low_complexity 38 67 0 1878 93 0 15 chr1 34741007 34741276 -247452388 - AluSx SINE Alu -23 289 25 1862 129 23 26 chr1 34741298 34741601 -247452063 - AluSx SINE Alu -10 302 1 543 308 125 45 chr1 34741621 34742120 -247451544 - L2 LINE L2 -692 2622 2165 2097 110 0 0 chr1 34742120 34742412 -247451252 + AluSx SINE Alu 1 292 -20 2259 92 0 13 chr1 34742421 34742737 -247450927 + AluSq SINE Alu 1 312 -1 543 308 125 45 chr1 34742737 34742932 -247450732 - L2 LINE L2 -1156 2158 1980 738 159 0 38 chr1 34742932 34743064 -247450600 + FLAM_C SINE Alu 1 127 -6 543 308 125 45 chr1 34743064 34743103 -247450561 - L2 LINE L2 -1334 1980 1768 2203 103 0 3 chr1 34743103 34743404 -247450260 + AluSp SINE Alu 1 300 -13 474 314 29 58 chr1 34743408 34743650 -247450014 - L2 LINE L2 -654 2660 2426 742 183 86 20 chr1 34743688 34743885 -247449779 - MER106B DNA MER1_type -2 1057 848 1874 157 3 0 chr1 34743886 34744185 -247449479 + AluJb SINE Alu 1 300 -12 1858 96 64 4 chr1 34744491 34744772 -247448892 + AluSq SINE Alu 4 301 -12 1776 140 3 13 chr1 34744787 34745087 -247448577 + AluJb SINE Alu 2 298 -14 250 297 168 20 chr1 34745224 34745325 -247448339 - L2 LINE L2 -12 3260 3145 357 304 158 16 chr1 34745628 34745812 -247447852 - MIR SINE MIR -30 232 23 335 288 63 36 chr1 34745958 34746180 -247447484 - L2 LINE L2 -181 3091 2864 219 36 0 0 chr1 34746689 34746717 -247446947 + (GA)n Simple_repeat Simple_repeat 1 28 0 327 338 44 15 chr1 34747027 34747163 -247446501 - MIR SINE MIR -95 167 28 2302 92 0 0 chr1 34747232 34747537 -247446127 + AluSc SINE Alu 1 305 -4 2091 69 0 11 chr1 34747651 34747926 -247445738 - AluY SINE Alu -39 272 1 182 307 40 50 chr1 34748080 34748181 -247445483 + L2 LINE L2 3166 3265 -7 715 160 13 20 chr1 34748338 34748488 -247445176 + L1MA10 LINE L1 6185 6333 -1 2300 81 3 0 chr1 34748497 34748794 -247444870 + AluSp SINE Alu 1 298 -15 194 209 127 6 chr1 34748912 34748971 -247444693 - MIR SINE MIR -116 92 34 1903 153 7 0 chr1 34750088 34750389 -247443275 + AluJo SINE Alu 1 303 -9 426 301 44 12 chr1 34750412 34750600 -247443064 + MIR SINE MIR 20 212 -50 1997 105 34 3 chr1 34751814 34752110 -247441554 - AluSg SINE Alu -5 305 1 183 129 0 0 chr1 34752138 34752169 -247441495 + (T)n Simple_repeat Simple_repeat 1 31 0 2196 84 10 0 chr1 34753403 34753700 -247439964 + AluSp SINE Alu 1 300 -13 2296 76 0 13 chr1 34753818 34754122 -247439542 + AluY SINE Alu 1 300 -11 187 330 274 0 chr1 34754828 34754934 -247438730 - L2 LINE L2 -2 3270 3136 347 313 37 8 chr1 34755154 34755288 -247438376 + MIR SINE MIR 48 185 -77 189 0 0 0 chr1 34755288 34755309 -247438355 + (T)n Simple_repeat Simple_repeat 1 21 0 715 241 85 30 chr1 34756720 34756919 -247436745 - MIR SINE MIR -13 249 40 2133 74 0 11 chr1 34756943 34757226 -247436438 - AluSx SINE Alu -32 280 1 2157 62 3 42 chr1 34757403 34757709 -247435955 - AluY SINE Alu -17 294 1 2329 91 0 0 chr1 34757811 34758119 -247435545 - AluSq SINE Alu -5 308 1 188 324 110 29 chr1 34758286 34758378 -247435286 + MIR SINE MIR 108 216 -46 1752 121 69 0 chr1 34758378 34758668 -247434996 + AluSx SINE Alu 1 310 -2 188 324 110 29 chr1 34758668 34758711 -247434953 + MIR SINE MIR 216 254 -8 244 224 102 31 chr1 34759289 34759387 -247434277 - MIR SINE MIR -69 193 89 667 254 37 26 chr1 34759722 34759911 -247433753 + MLT1L LTR MaLR 103 293 -322 279 208 0 0 chr1 34760015 34760068 -247433596 - MIR SINE MIR 0 262 210 972 140 20 0 chr1 34760071 34760221 -247433443 - Tigger1 DNA MER2_type -1 2417 2265 207 0 0 0 chr1 34760240 34760263 -247433401 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2042 94 0 0 chr1 34760280 34760547 -247433117 - AluSx SINE Alu -45 267 1 585 219 33 79 chr1 34760604 34760819 -247432845 - L2 LINE L2 -15 3298 3094 520 244 107 6 chr1 34761122 34761290 -247432374 + MIR SINE MIR 57 241 -21 2100 104 10 3 chr1 34761315 34761624 -247432040 - AluSq SINE Alu -2 311 1 27 0 0 0 chr1 34762163 34762190 -247431474 + AT_rich Low_complexity Low_complexity 1 27 0 816 145 0 0 chr1 34764757 34764881 -247428783 + AluJ SINE Alu 6 129 -183 2240 105 0 0 chr1 34764887 34765192 -247428472 + AluSx SINE Alu 2 306 -6 30 0 0 0 chr1 34765350 34765380 -247428284 + AT_rich Low_complexity Low_complexity 1 30 0 2061 90 7 4 chr1 34765380 34765657 -247428007 + AluSc SINE Alu 1 278 -31 186 43 0 0 chr1 34765662 34765685 -247427979 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1031 154 6 22 chr1 34765685 34765867 -247427797 + AluJ SINE Alu 134 312 0 2018 118 0 16 chr1 34765880 34766185 -247427479 + AluSx SINE Alu 7 306 -6 241 104 83 0 chr1 34766600 34766648 -247427016 + L1MA9 LINE L1 6226 6277 -35 329 301 131 13 chr1 34766967 34767120 -247426544 + MIR SINE MIR 17 187 -75 207 0 0 0 chr1 34767254 34767277 -247426387 + (T)n Simple_repeat Simple_repeat 1 23 0 213 279 7 45 chr1 34767389 34767543 -247426121 + (CCG)n Simple_repeat Simple_repeat 2 149 0 22 70 0 0 chr1 34767548 34767591 -247426073 + GC_rich Low_complexity Low_complexity 1 43 0 227 288 168 8 chr1 34768122 34768247 -247425417 + MIR SINE MIR 72 216 -46 2409 78 0 38 chr1 34768248 34768567 -247425097 + AluSg SINE Alu 1 307 -3 2466 75 0 0 chr1 34769702 34769996 -247423668 - AluY SINE Alu -17 294 1 1818 168 3 26 chr1 34769996 34770300 -247423364 - AluJo SINE Alu -15 297 1 210 266 23 86 chr1 34770300 34770368 -247423296 - MIR SINE MIR -4 258 200 2303 120 0 0 chr1 34770368 34770676 -247422988 + AluSq SINE Alu 1 308 -5 210 266 23 86 chr1 34770676 34770735 -247422929 - MIR SINE MIR -62 200 139 2251 120 0 0 chr1 34770835 34771134 -247422530 + AluSg SINE Alu 1 299 -11 2352 98 3 16 chr1 34771134 34771440 -247422224 + AluSg SINE Alu 1 302 -8 2402 98 0 13 chr1 34772005 34772320 -247421344 + AluSx SINE Alu 2 312 0 339 304 103 46 chr1 34772434 34772628 -247421036 + MIR SINE MIR 58 262 0 356 264 211 43 chr1 34772873 34773081 -247420583 + MIR SINE MIR 14 256 -6 220 217 169 12 chr1 34773158 34773241 -247420423 + MIR SINE MIR 34 129 -133 1513 131 61 51 chr1 34774188 34774283 -247419381 + MER2 DNA MER2_type 6 99 -246 2112 106 0 19 chr1 34774283 34774595 -247419069 + AluSx SINE Alu 1 306 -6 1513 131 61 51 chr1 34774595 34774811 -247418853 + MER2 DNA MER2_type 99 320 -25 764 189 13 189 chr1 34775008 34775050 -247418614 - MIR SINE MIR -4 258 210 2560 65 3 0 chr1 34775050 34775356 -247418308 - AluSp SINE Alu -6 307 1 764 189 13 189 chr1 34775356 34775615 -247418049 - MIR SINE MIR -52 210 10 1043 105 0 0 chr1 34776215 34776348 -247417316 + AluSq/x SINE Alu 1 133 -179 243 182 23 0 chr1 34776426 34776470 -247417194 - MIR3 SINE MIR -30 178 134 2092 125 0 7 chr1 34776501 34776798 -247416866 - AluSq SINE Alu -18 295 1 617 136 0 0 chr1 34776937 34777018 -247416646 - AluJ/FLAM SINE Alu -228 84 4 2325 110 3 0 chr1 34777037 34777345 -247416319 + AluSg1 SINE Alu 1 309 0 1985 131 28 3 chr1 34777387 34777677 -247415987 + AluSx SINE Alu 1 297 -15 237 169 0 0 chr1 34777710 34777757 -247415907 + L1MB7 LINE L1 6132 6178 0 2168 89 11 7 chr1 34777851 34778157 -247415507 - AluSp SINE Alu 0 307 1 533 232 98 68 chr1 34778161 34778365 -247415299 - L1ME4a LINE L1 -113 6008 5791 2296 96 0 10 chr1 34778365 34778667 -247414997 - AluSg SINE Alu -11 299 1 533 232 98 68 chr1 34778667 34778830 -247414834 - L1ME4a LINE L1 -330 5791 5634 331 214 194 0 chr1 34779023 34779126 -247414538 - L2 LINE L2 0 3313 3191 772 234 7 0 chr1 34779192 34779337 -247414327 + FRAM SINE Alu 1 146 -30 311 0 0 25 chr1 34779339 34779379 -247414285 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2347 88 3 38 chr1 34779485 34779805 -247413859 + AluSc SINE Alu 1 309 0 239 275 38 25 chr1 34779842 34779922 -247413742 + L3 LINE CR1 1423 1503 -74 2531 50 0 3 chr1 34780031 34780329 -247413335 - AluY SINE Alu -14 297 1 207 288 0 17 chr1 34780556 34780615 -247413049 + L3 LINE CR1 1517 1574 -3 1813 112 0 35 chr1 34781559 34781818 -247411846 + AluSx SINE Alu 10 259 -53 225 318 64 9 chr1 34782292 34782402 -247411262 + MIR SINE MIR 86 201 -61 * 422 241 132 61 chr1 34782399 34782611 -247411053 + MIR SINE MIR 10 236 -26 252 0 0 0 chr1 34782626 34782654 -247411010 + (TG)n Simple_repeat Simple_repeat 1 28 0 2157 111 0 0 chr1 34782654 34782933 -247410731 - AluSx SINE Alu -33 279 1 2118 114 0 38 chr1 34782942 34783257 -247410407 - AluSq SINE Alu -10 303 1 1794 98 0 4 chr1 34783260 34783485 -247410179 - AluSx SINE Alu -88 224 1 180 77 0 0 chr1 34783546 34783572 -247410092 + (TTA)n Simple_repeat Simple_repeat 1 26 0 575 163 0 0 chr1 34783595 34783687 -247409977 - AluJ/FLAM SINE Alu -219 93 2 479 260 215 23 chr1 34784574 34784793 -247408871 + MIR SINE MIR 2 262 0 2295 92 3 0 chr1 34784813 34785128 -247408536 + AluSp SINE Alu 1 316 0 2529 80 0 6 chr1 34785781 34786093 -247407571 - AluSq SINE Alu -3 310 1 2216 113 3 0 chr1 34786095 34786388 -247407276 - AluSx SINE Alu -18 294 1 2395 92 3 0 chr1 34786403 34786707 -247406957 - AluSp SINE Alu -6 307 3 835 107 8 25 chr1 34786719 34786841 -247406823 - FLAM_C SINE Alu -18 125 6 538 323 134 11 chr1 34786847 34787287 -247406377 + L2 LINE L2 1979 2472 -842 604 104 8 52 chr1 34787363 34787497 -247406167 + (TTTC)n Simple_repeat Simple_repeat 1 128 0 1996 139 0 0 chr1 34787497 34787771 -247405893 - AluJb SINE Alu -38 274 1 2223 136 0 0 chr1 34787850 34788160 -247405504 - AluSx SINE Alu -2 310 1 1779 150 0 70 chr1 34788162 34788475 -247405189 - AluJb SINE Alu -15 297 7 709 232 87 93 chr1 34788754 34789064 -247404600 - MER102a DNA MER1_type -14 316 9 859 245 43 51 chr1 34789272 34789525 -247404139 + MIR SINE MIR 12 262 0 1723 150 8 4 chr1 34789612 34789866 -247403798 - AluJo SINE Alu -21 291 37 365 264 35 49 chr1 34790013 34790157 -247403507 + L2 LINE L2 3171 3312 -1 818 268 96 30 chr1 34790302 34790604 -247403060 + MLT1K LTR MaLR 117 438 -150 1344 106 0 11 chr1 34790606 34790819 -247402845 - AluSg/x SINE Alu 0 317 107 307 294 113 57 chr1 34791137 34791314 -247402350 + MIR SINE MIR 47 233 -29 2126 128 7 0 chr1 34791466 34791756 -247401908 - AluSx SINE Alu -20 292 1 432 289 75 11 chr1 34791814 34792001 -247401663 + L1MC4a LINE L1 5628 5809 -312 361 174 0 0 chr1 34792339 34792408 -247401256 + LTR30 LTR ERV1 552 620 -102 247 263 22 66 chr1 34792462 34792526 -247401138 + L1ME4a LINE L1 5991 6047 -74 2206 101 7 3 chr1 34792526 34792822 -247400842 - AluSc SINE Alu -12 297 1 247 263 22 66 chr1 34792822 34792894 -247400770 + L1ME4a LINE L1 6047 6121 0 2232 99 26 3 chr1 34792994 34793297 -247400367 - AluSp SINE Alu -2 311 2 1979 119 18 14 chr1 34793941 34794058 -247399606 + AluSq SINE Alu 20 135 -178 2350 93 0 31 chr1 34794058 34794380 -247399284 + AluSx SINE Alu 1 312 0 1979 119 18 14 chr1 34794380 34794539 -247399125 + AluSq SINE Alu 135 297 -16 256 73 0 0 chr1 34794613 34794654 -247399010 + HY3 scRNA scRNA 54 94 -7 1631 184 17 10 chr1 34794682 34794976 -247398688 + AluJo SINE Alu 1 296 -16 2285 112 0 0 chr1 34794979 34795275 -247398389 + AluSq SINE Alu 1 296 -17 2525 74 0 3 chr1 34795538 34795848 -247397816 - AluY SINE Alu -2 309 1 24 0 0 0 chr1 34795893 34795917 -247397747 + AT_rich Low_complexity Low_complexity 1 24 0 526 293 18 54 chr1 34795943 34796061 -247397603 + MIR SINE MIR 34 146 -116 2351 108 0 0 chr1 34796061 34796356 -247397308 + AluSg SINE Alu 1 295 -15 526 293 18 54 chr1 34796356 34796404 -247397260 + MIR SINE MIR 146 194 -68 1790 106 0 0 chr1 34796410 34796637 -247397027 + AluSq SINE Alu 1 227 -86 3414 173 70 104 chr1 34796637 34796914 -247396750 + L1M4 LINE L1 4169 4454 -1692 1600 184 3 32 chr1 34796914 34797057 -247396607 + AluJb SINE Alu 6 152 -160 2289 97 14 0 chr1 34797057 34797347 -247396317 + AluY SINE Alu 1 294 -17 1600 184 3 32 chr1 34797347 34797512 -247396152 + AluJb SINE Alu 152 305 -7 3414 173 70 104 chr1 34797512 34797559 -247396105 + L1M4 LINE L1 4454 4501 -1645 1865 179 0 3 chr1 34797559 34797585 -247396079 - AluJo SINE Alu 0 312 287 306 0 0 0 chr1 34797585 34797619 -247396045 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 1865 179 0 3 chr1 34797619 34797905 -247395759 - AluJo SINE Alu -25 287 1 3414 173 70 104 chr1 34797905 34798261 -247395403 + L1M4 LINE L1 4501 4868 -1278 2290 116 0 7 chr1 34798261 34798571 -247395093 + AluSx SINE Alu 1 308 -4 3414 173 70 104 chr1 34798571 34798929 -247394735 + L1M4 LINE L1 4868 5237 -909 2336 118 0 0 chr1 34798929 34799235 -247394429 - AluSx SINE Alu -6 306 1 1444 107 0 0 chr1 34799239 34799444 -247394220 - L1PA13 LINE L1 -1 6162 5958 3414 173 70 104 chr1 34799444 34799547 -247394117 + L1M4 LINE L1 5240 5278 -868 374 101 29 29 chr1 34799552 34799621 -247394043 + L1MB7 LINE L1 6103 6171 -13 2024 156 10 0 chr1 34799622 34799929 -247393735 - AluJb SINE Alu -2 310 1 210 91 0 0 chr1 34799940 34799973 -247393691 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 1500 276 143 23 chr1 34800558 34801025 -247392639 - L2 LINE L2 0 3313 2903 2319 113 0 0 chr1 34801025 34801327 -247392337 + AluSx SINE Alu 1 302 -10 1522 176 58 18 chr1 34801333 34801611 -247392053 + AluJb SINE Alu 1 289 -23 1500 276 143 23 chr1 34801611 34802096 -247391568 - L2 LINE L2 -414 2899 2249 310 328 185 0 chr1 34802088 34802277 -247391387 + MIR SINE MIR 39 262 0 * 2108 143 0 9 chr1 34802296 34802611 -247391053 + AluSx SINE Alu 1 312 0 1732 167 13 42 chr1 34802619 34802759 -247390905 + AluJo SINE Alu 1 144 -168 2363 96 0 0 chr1 34802759 34803050 -247390614 + AluSg SINE Alu 3 293 -17 1732 167 13 42 chr1 34803050 34803215 -247390449 + AluJo SINE Alu 144 297 -15 2327 94 0 10 chr1 34803535 34803843 -247389821 - AluSc SINE Alu -4 305 1 186 319 58 0 chr1 34804189 34804258 -247389406 + MIR SINE MIR 172 244 -18 417 287 149 46 chr1 34804385 34804442 -247389222 + MIR SINE MIR 48 98 -164 198 0 0 0 chr1 34804442 34804464 -247389200 + (TCTTG)n Simple_repeat Simple_repeat 2 23 0 2258 102 10 0 chr1 34804464 34804758 -247388906 - AluSc SINE Alu -12 297 1 2426 99 0 0 chr1 34804759 34805061 -247388603 - AluSq SINE Alu -11 302 1 417 287 149 46 chr1 34805061 34805195 -247388469 + MIR SINE MIR 97 262 0 184 321 18 0 chr1 34805211 34805267 -247388397 - MIR SINE MIR -78 130 74 2221 132 3 0 chr1 34805281 34805585 -247388079 + AluSx SINE Alu 1 305 -7 670 292 50 39 chr1 34805595 34805876 -247387788 + MLT1K LTR MaLR 15 298 -290 2181 116 20 0 chr1 34805915 34806217 -247387447 - AluSx SINE Alu -4 308 1 1974 167 0 0 chr1 34806220 34806514 -247387150 - AluJb SINE Alu -16 296 3 309 226 129 16 chr1 34806526 34806650 -247387014 + MLT1K LTR MaLR 293 430 -158 657 206 89 17 chr1 34806797 34806977 -247386687 - LTR33 LTR ERVL 0 521 329 2393 100 0 0 chr1 34807340 34807649 -247386015 - AluSc SINE Alu 0 309 1 1417 150 105 45 chr1 34807679 34807972 -247385692 + AluSx SINE Alu 1 309 0 834 142 0 0 chr1 34807980 34808093 -247385571 - FLAM_C SINE Alu -30 113 1 28 0 0 0 chr1 34808655 34808683 -247384981 + AT_rich Low_complexity Low_complexity 1 28 0 2446 58 0 7 chr1 34808684 34809024 -247384640 + AluY SINE Alu 1 311 0 233 310 9 60 chr1 34809126 34809242 -247384422 - MIR SINE MIR 0 262 153 373 326 14 14 chr1 34809298 34809439 -247384225 - MIR SINE MIR -101 161 21 2423 105 0 0 chr1 34809452 34809756 -247383908 - AluSx SINE Alu -8 304 1 835 238 32 0 chr1 34810268 34810457 -247383207 - MIR SINE MIR -56 206 12 2159 109 3 16 chr1 34810464 34810767 -247382897 + AluSx SINE Alu 1 299 -13 604 294 99 0 chr1 34810973 34811225 -247382439 - MLT1K LTR MaLR -235 353 77 187 301 167 38 chr1 34811291 34811477 -247382187 - L2 LINE L2 -126 3146 2937 282 56 0 0 chr1 34811487 34811523 -247382141 + (TCCC)n Simple_repeat Simple_repeat 1 36 0 2246 104 0 0 chr1 34811523 34811812 -247381852 - AluSx SINE Alu -23 289 1 358 323 84 20 chr1 34811895 34812146 -247381518 - L2 LINE L2 -890 2424 2158 2012 224 88 53 chr1 34812172 34812245 -247381419 + L1ME3 LINE L1 5337 5406 -756 1972 164 0 0 chr1 34812245 34812538 -247381126 + AluJb SINE Alu 1 293 -19 2012 224 88 53 chr1 34812538 34813202 -247380462 + L1ME3 LINE L1 5406 6100 -62 1119 177 0 0 chr1 34813203 34813378 -247380286 + FAM SINE Alu 1 175 0 23 0 0 0 chr1 34813379 34813402 -247380262 + AT_rich Low_complexity Low_complexity 1 23 0 2326 120 0 0 chr1 34813411 34813720 -247379944 + AluSq SINE Alu 1 309 -4 333 340 30 0 chr1 34814046 34814146 -247379518 - L2 LINE L2 -8 3264 3162 268 289 0 12 chr1 34814664 34814747 -247378917 + L1MC/D LINE L1 5797 5878 -1930 1166 143 4 35 chr1 34814979 34815237 -247378427 - AluJb SINE Alu -5 307 1 1625 167 33 7 chr1 34815259 34815597 -247378067 + AluJb SINE Alu 1 345 0 790 162 0 49 chr1 34815601 34815743 -247377921 + AluJo SINE Alu 2 136 -176 2390 50 7 14 chr1 34817160 34817457 -247376207 + AluY SINE Alu 1 295 -16 445 265 52 88 chr1 34817660 34817909 -247375755 + MIR SINE MIR 23 262 0 2451 92 3 6 chr1 34819038 34819352 -247374312 + AluSp SINE Alu 1 313 0 180 0 0 0 chr1 34819557 34819577 -247374087 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1909 136 0 13 chr1 34819626 34819936 -247373728 + AluJb SINE Alu 1 306 -6 741 118 0 0 chr1 34820309 34820411 -247373253 + FRAM SINE Alu 54 155 -21 23 0 0 0 chr1 34820412 34820435 -247373229 + AT_rich Low_complexity Low_complexity 1 23 0 2150 109 0 0 chr1 34820436 34820729 -247372935 + AluSx SINE Alu 1 293 -19 363 282 39 23 chr1 34820732 34820991 -247372673 - L1M4 LINE L1 -3597 2549 2287 875 181 9 86 chr1 34820997 34821207 -247372457 - AluJb SINE Alu -5 307 114 223 300 11 56 chr1 34821305 34821395 -247372269 + L2 LINE L2 3144 3229 -43 2608 196 53 2 chr1 34821511 34822061 -247371603 - L1MD3 LINE L1 -7 7988 7411 2226 109 0 0 chr1 34822073 34822377 -247371287 + AluSx SINE Alu 1 304 -8 269 234 67 31 chr1 34822398 34822544 -247371120 + L1ME4a LINE L1 5823 5962 -159 2396 80 0 3 chr1 34822544 34822856 -247370808 - AluY SINE Alu 0 311 1 269 234 67 31 chr1 34822856 34822898 -247370766 + L1ME4a LINE L1 5962 6103 -18 347 224 206 47 chr1 34822920 34823090 -247370574 + L1ME4a LINE L1 5894 6090 -31 938 177 13 0 chr1 34823095 34823253 -247370411 - FRAM SINE Alu -16 160 1 22 0 0 0 chr1 34823395 34823417 -247370247 + AT_rich Low_complexity Low_complexity 1 22 0 2170 93 6 26 chr1 34823627 34823938 -247369726 - AluSx SINE Alu -7 305 1 456 269 122 21 chr1 34823946 34824184 -247369480 - L1ME1 LINE L1 -284 5882 5614 346 207 30 118 chr1 34824185 34824320 -247369344 - LTR16C LTR ERVL 0 491 369 494 268 21 21 chr1 34824621 34824763 -247368901 - L1ME1 LINE L1 -547 5617 5476 2184 98 0 7 chr1 34824767 34825074 -247368590 - AluSx SINE Alu -1 311 7 1969 116 0 58 chr1 34825079 34825406 -247368258 - AluJb SINE Alu -4 308 1 2011 103 0 0 chr1 34825902 34826174 -247367490 + AluSg SINE Alu 1 272 -38 268 273 0 15 chr1 34826231 34826297 -247367367 + MIR SINE MIR 20 84 -178 180 234 103 37 chr1 34826745 34826852 -247366812 + L2 LINE L2 2360 2473 -841 1946 154 17 100 chr1 34828098 34828577 -247365087 - L1MC3 LINE L1 -484 7301 6863 267 216 225 45 chr1 34829059 34829170 -247364494 + MIR SINE MIR 25 155 -107 647 306 36 0 chr1 34829520 34829716 -247363948 + MIR SINE MIR 48 250 -12 300 239 29 29 chr1 34829982 34830084 -247363580 + MIR SINE MIR 21 123 -85 345 238 19 29 chr1 34830095 34830200 -247363464 - L1MC4 LINE L1 -1325 6717 6614 * 410 216 11 28 chr1 34830116 34830230 -247363434 + L1MC4 LINE L1 1995 6983 -1339 234 380 33 20 chr1 34830274 34830424 -247363240 + MIR SINE MIR 76 227 -35 1772 114 11 37 chr1 34831126 34831249 -247362415 + AluSx SINE Alu 11 136 -176 2020 95 47 3 chr1 34831249 34831545 -247362119 + AluSp SINE Alu 1 309 -4 1772 114 11 37 chr1 34831545 34831694 -247361970 + AluSx SINE Alu 136 276 -36 185 324 86 9 chr1 34831954 34832059 -247361605 + MIR SINE MIR 19 131 -131 2572 122 20 54 chr1 34832064 34832508 -247361156 - Tigger2a DNA MER2_type -4 430 2 255 311 44 0 chr1 34832537 34832627 -247361037 - LTR67 LTR ERVL -8 549 456 445 246 48 75 chr1 34832682 34832869 -247360795 - LTR67 LTR ERVL -256 301 120 797 111 118 7 chr1 34833116 34833242 -247360422 + FRAM SINE Alu 21 164 -148 423 0 0 0 chr1 34833242 34833289 -247360375 + (CA)n Simple_repeat Simple_repeat 2 48 0 439 247 0 11 chr1 34833521 34833614 -247360050 + L2 LINE L2 3138 3229 -43 241 337 72 36 chr1 34833675 34833841 -247359823 + L2 LINE L2 2882 3053 -219 848 275 18 9 chr1 34833902 34834131 -247359533 + MIR SINE MIR 3 233 -29 263 267 9 52 chr1 34834670 34834786 -247358878 + L1ME LINE L1 5743 5853 -268 408 294 43 56 chr1 34834917 34835148 -247358516 - MIR SINE MIR -15 247 20 304 207 24 12 chr1 34835688 34835770 -247357894 - L2 LINE L2 -213 3059 2977 409 236 0 0 chr1 34835774 34835846 -247357818 - FRAM SINE Alu -21 145 74 2171 60 60 0 chr1 34835990 34836271 -247357393 + AluSp SINE Alu 1 298 -15 861 91 0 61 chr1 34836335 34836467 -247357197 + AluSq/x SINE Alu 7 130 -183 1927 129 0 4 chr1 34836579 34836859 -247356805 + AluSx SINE Alu 1 279 -33 228 67 0 0 chr1 34836859 34836889 -247356775 + (CA)n Simple_repeat Simple_repeat 1 30 0 826 253 44 24 chr1 34836890 34837139 -247356525 + HAL1b LINE L1 311 564 -784 1687 159 3 37 chr1 34837260 34837581 -247356083 - AluJb SINE Alu -2 310 1 2136 90 6 10 chr1 34837754 34838065 -247355599 + AluSg SINE Alu 1 310 0 536 127 11 35 chr1 34838206 34838261 -247355403 + L1PA12 LINE L1 5994 6049 -119 1949 131 3 13 chr1 34838261 34838559 -247355105 + AluSx SINE Alu 1 295 -17 536 127 11 35 chr1 34838559 34838663 -247355001 + L1PA12 LINE L1 6049 6168 0 318 259 58 29 chr1 34838812 34838951 -247354713 + L1ME LINE L1 4026 4168 -1978 262 277 27 0 chr1 34838951 34839063 -247354601 - HAL1 LINE L1 -364 2143 2029 190 343 176 0 chr1 34839098 34839206 -247354458 - MIR SINE MIR -77 185 59 2393 30 40 0 chr1 34839206 34839503 -247354161 - AluY SINE Alu -2 309 1 203 294 39 49 chr1 34839718 34839820 -247353844 + L2 LINE L2 2875 2975 -339 351 0 0 0 chr1 34840144 34840183 -247353481 + (TC)n Simple_repeat Simple_repeat 1 39 0 194 283 67 0 chr1 34840200 34840260 -247353404 - L2 LINE L2 0 3272 3209 604 250 61 0 chr1 34840269 34840433 -247353231 + MER91A DNA MER1_type 23 196 0 322 293 37 0 chr1 34840434 34840516 -247353148 - L2 LINE L2 -69 3203 3119 298 339 119 8 chr1 34840535 34840653 -247353011 - MIR SINE MIR -61 147 17 472 266 136 56 chr1 34841008 34841231 -247352433 + L1ME LINE L1 4377 4581 -1565 1489 157 3 74 chr1 34841231 34841387 -247352277 + AluJo SINE Alu 1 124 -188 2287 74 10 19 chr1 34841387 34841697 -247351967 + AluSq SINE Alu 1 307 -6 1489 157 3 74 chr1 34841697 34841864 -247351800 + AluJo SINE Alu 124 301 -11 472 266 136 56 chr1 34841864 34841971 -247351693 + L1ME LINE L1 4581 4678 -1468 1153 101 10 30 chr1 34841971 34842169 -247351495 - L1MB3 LINE L1 -3 6180 5987 472 266 136 56 chr1 34842169 34842445 -247351219 + L1ME LINE L1 4678 5048 -1098 2355 98 141 5 chr1 34843203 34843580 -247350084 - MSTA LTR MaLR 0 428 1 670 291 100 17 chr1 34843867 34844218 -247349446 + L1ME LINE L1 5259 5638 -483 572 201 48 109 chr1 34844340 34844704 -247348960 - L2 LINE L2 -232 3081 2736 213 39 0 0 chr1 34844921 34844947 -247348717 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 2207 99 7 0 chr1 34844989 34845291 -247348373 + AluSx SINE Alu 1 304 -8 247 301 0 11 chr1 34845358 34845500 -247348164 + GA-rich Low_complexity Low_complexity 1 140 0 667 276 60 24 chr1 34846164 34846414 -247347250 + LTR16C LTR ERVL 97 355 -136 332 245 75 0 chr1 34846415 34846521 -247347143 - L1MC5 LINE L1 -500 7461 7348 1178 258 33 36 chr1 34846664 34846998 -247346666 + LTR16C LTR ERVL 159 491 0 1307 229 60 74 chr1 34847129 34847650 -247346014 - L1MC4 LINE L1 -737 7224 6773 2141 126 0 0 chr1 34847650 34847952 -247345712 - AluSg SINE Alu -8 302 1 1307 229 60 74 chr1 34847952 34848307 -247345357 - L1MC4 LINE L1 -1188 6773 6415 1363 153 0 0 chr1 34848396 34848618 -247345046 - AluJb SINE Alu -90 222 1 675 206 56 19 chr1 34848624 34848784 -247344880 - L1MC4 LINE L1 -2047 5761 5596 1716 96 96 28 chr1 34848791 34849073 -247344591 - AluY SINE Alu -10 301 1 2702 29 0 0 chr1 34849084 34849393 -247344271 - AluY SINE Alu -2 309 1 5235 49 0 2 chr1 34849395 34850023 -247343641 - L1PA5 LINE L1 -6 6148 5522 2109 92 27 0 chr1 34850079 34850371 -247343293 + AluSx SINE Alu 1 300 -12 216 86 0 0 chr1 34850377 34850412 -247343252 + (CATA)n Simple_repeat Simple_repeat 2 36 0 1359 201 72 0 chr1 34850429 34850543 -247343121 + AluJb SINE Alu 6 110 -202 198 0 0 0 chr1 34850543 34850565 -247343099 + (TAAAA)n Simple_repeat Simple_repeat 3 24 0 1359 201 72 0 chr1 34850565 34850729 -247342935 + AluJb SINE Alu 110 304 -8 367 284 140 32 chr1 34850735 34850985 -247342679 + L1 LINE L1 3241 3517 -2629 251 272 10 0 chr1 34850992 34851095 -247342569 + CT-rich Low_complexity Low_complexity 1 104 0 511 209 18 9 chr1 34851141 34851251 -247342413 + MLT1A1 LTR MaLR 1 111 -254 1239 151 0 5 chr1 34851254 34851459 -247342205 + AluJb SINE Alu 86 289 -23 2040 90 18 0 chr1 34851461 34851775 -247341889 + AluSp SINE Alu 1 319 0 1032 155 7 145 chr1 34851783 34852073 -247341591 + MLT1A1 LTR MaLR 116 365 0 183 286 48 0 chr1 34852314 34852377 -247341287 - MIR SINE MIR -117 145 80 250 290 112 47 chr1 34852611 34852718 -247340946 - L2 LINE L2 -7 3306 3193 325 280 160 0 chr1 34852972 34853072 -247340592 + MIR SINE MIR 12 127 -135 2816 206 105 125 chr1 34853146 34853609 -247340055 - L2 LINE L2 -7 3306 2835 2206 119 0 0 chr1 34853609 34853919 -247339745 + AluSg SINE Alu 1 310 0 2816 206 105 125 chr1 34853919 34854389 -247339275 - L2 LINE L2 -478 2835 2357 882 136 14 0 chr1 34854389 34854560 -247339104 - FRAM SINE Alu 0 172 1 2816 206 105 125 chr1 34854560 34855243 -247338421 - L2 LINE L2 -956 2357 1575 334 267 10 20 chr1 34855244 34855345 -247338319 - L2 LINE L2 -1990 1324 1225 339 208 0 73 chr1 34855348 34855444 -247338220 + MIR SINE MIR 174 262 0 240 170 19 38 chr1 34856314 34856351 -247337313 - MLT2B3 LTR ERVL 0 554 517 243 0 0 0 chr1 34856351 34856378 -247337286 + (TGGA)n Simple_repeat Simple_repeat 2 28 0 240 170 19 38 chr1 34856378 34856393 -247337271 - MLT2B3 LTR ERVL -37 517 503 606 69 38 38 chr1 34856408 34856567 -247337097 + (TAGA)n Simple_repeat Simple_repeat 4 162 0 2102 127 0 0 chr1 34856574 34856881 -247336783 + AluSx SINE Alu 4 310 -2 204 185 19 19 chr1 34856890 34856944 -247336720 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 2951 159 64 2 chr1 34856944 34857429 -247336235 - MLT2B3 LTR ERVL -39 515 1 1684 145 7 45 chr1 34857479 34857789 -247335875 + AluJo SINE Alu 3 300 -12 253 236 0 0 chr1 34858106 34858161 -247335503 - MIR SINE MIR -6 256 202 2029 124 0 7 chr1 34858264 34858563 -247335101 - AluSx SINE Alu -15 297 1 1325 213 37 67 chr1 34858583 34858959 -247334705 + MLT1A1 LTR MaLR 1 365 0 204 205 0 0 chr1 34859030 34859069 -247334595 + MIR SINE MIR 112 150 -112 1202 169 127 15 chr1 34859277 34859544 -247334120 + AluJo SINE Alu 2 298 -14 326 235 42 42 chr1 34859611 34859730 -247333934 + L1 LINE L1 3742 3860 -2286 400 318 81 28 chr1 34859757 34860288 -247333376 + L1 LINE L1 3773 4331 -1815 2037 131 0 0 chr1 34860315 34860606 -247333058 + AluSx SINE Alu 1 291 -21 244 226 0 0 chr1 34860842 34860895 -247332769 + L1 LINE L1 4733 4785 -1361 1955 122 3 0 chr1 34860919 34861207 -247332457 + AluSx SINE Alu 1 289 -23 414 57 0 0 chr1 34861219 34861272 -247332392 + (TA)n Simple_repeat Simple_repeat 1 53 0 2179 225 43 47 chr1 34861278 34861830 -247331834 - MER74B LTR ERVL -18 604 55 427 312 84 30 chr1 34861831 34861991 -247331673 + L1ME LINE L1 4784 4963 -1183 2103 107 0 10 chr1 34861991 34862299 -247331365 + AluSx SINE Alu 1 305 -7 427 312 84 30 chr1 34862299 34862375 -247331289 + L1ME LINE L1 4963 5033 -1113 280 227 0 0 chr1 34862429 34862495 -247331169 - MER53 DNA DNA -68 121 56 1573 172 0 86 chr1 34862499 34862700 -247330964 + MER49 LTR ERV1 5 167 -756 1799 130 0 7 chr1 34862700 34862970 -247330694 + AluSx SINE Alu 5 272 -40 1573 172 0 86 chr1 34862970 34863105 -247330559 + MER49 LTR ERV1 167 312 -611 800 141 0 90 chr1 34863106 34863262 -247330402 + FLAM_C SINE Alu 2 143 0 3265 167 42 32 chr1 34863262 34863277 -247330387 + MER49 LTR ERV1 296 309 -614 1571 130 37 83 chr1 34863277 34863601 -247330063 + AluSg SINE Alu 1 309 -1 3265 167 42 32 chr1 34863601 34864207 -247329457 + MER49 LTR ERV1 309 923 0 352 155 17 0 chr1 34864207 34864265 -247329399 - MER53 DNA DNA -130 59 1 1962 128 0 10 chr1 34864388 34864693 -247328971 + AluJo SINE Alu 1 302 -10 318 291 205 25 chr1 34864830 34865499 -247328165 + L2 LINE L2 1813 2601 -713 2279 85 0 3 chr1 34865568 34865862 -247327802 + AluSq SINE Alu 1 293 -20 270 276 99 75 chr1 34865867 34866161 -247327503 + L1ME LINE L1 5355 5655 -466 360 253 133 42 chr1 34866165 34866331 -247327333 - MIR SINE MIR -36 226 46 377 183 0 0 chr1 34866634 34866694 -247326970 - MER63 DNA MER1_type -322 738 679 1518 188 0 41 chr1 34866971 34867115 -247326549 + AluJo SINE Alu 3 151 -161 1836 154 27 0 chr1 34867115 34867408 -247326256 + AluSx SINE Alu 1 301 -11 1518 188 0 41 chr1 34867408 34867582 -247326082 + AluJo SINE Alu 151 308 -4 576 244 37 30 chr1 34867919 34868083 -247325581 + MER63A DNA MER1_type 45 209 -1 493 263 189 6 chr1 34868292 34868467 -247325197 - L2 LINE L2 0 3313 3107 2178 99 0 10 chr1 34868491 34868785 -247324879 + AluSx SINE Alu 2 292 -20 1183 102 0 18 chr1 34868786 34868953 -247324711 + AluSg/x SINE Alu 134 297 -15 698 288 78 46 chr1 34868953 34869259 -247324405 - L2 LINE L2 -230 3083 2788 2338 104 0 0 chr1 34869259 34869566 -247324098 - AluSx SINE Alu -5 307 1 698 288 78 46 chr1 34869566 34869642 -247324022 - L2 LINE L2 -525 2788 2716 1620 111 4 45 chr1 34869642 34869885 -247323779 + AluSg SINE Alu 49 319 0 301 53 0 0 chr1 34869885 34869923 -247323741 + (TAAA)n Simple_repeat Simple_repeat 2 108 0 698 288 78 46 chr1 34869923 34869945 -247323719 - L2 LINE L2 -597 2716 2696 1772 157 3 20 chr1 34869945 34870250 -247323414 + AluJb SINE Alu 1 300 -12 698 288 78 46 chr1 34870250 34870529 -247323135 - L2 LINE L2 -617 2696 2352 495 110 0 0 chr1 34870540 34870633 -247323031 - L1MDa LINE L1 -4605 1935 1859 256 287 0 30 chr1 34870655 34870756 -247322908 + L1MEc LINE L1 1646 1743 -4653 2007 152 0 10 chr1 34870764 34870895 -247322769 + AluJb SINE Alu 5 136 -176 2245 95 0 10 chr1 34870895 34871190 -247322474 + AluSc SINE Alu 1 292 -17 2007 152 0 10 chr1 34871190 34871368 -247322296 + AluJb SINE Alu 136 311 -1 1894 143 14 0 chr1 34871381 34871688 -247321976 - AluSq SINE Alu 0 311 1 370 218 26 103 chr1 34871757 34871869 -247321795 + L1MEc LINE L1 2232 2330 -3885 1564 178 9 44 chr1 34871869 34872184 -247321480 + AluJb SINE Alu 1 304 -8 370 218 26 103 chr1 34872184 34872227 -247321437 + L1MEc LINE L1 2330 2375 -3840 1402 211 71 50 chr1 34872228 34872607 -247321057 - MSTD LTR MaLR -9 387 1 1093 260 46 72 chr1 34872637 34872783 -247320881 + L1MEc LINE L1 2385 2533 -3682 1991 126 0 52 chr1 34872783 34873109 -247320555 - AluSq SINE Alu -4 309 1 1093 260 46 72 chr1 34873109 34873620 -247320044 + L1MEc LINE L1 2533 3024 -3191 2303 112 0 3 chr1 34874130 34874442 -247319222 - AluSx SINE Alu -1 311 1 1426 172 0 117 chr1 34874467 34874656 -247319008 - AluJb SINE Alu -8 304 171 327 49 0 0 chr1 34874656 34874697 -247318967 + (TG)n Simple_repeat Simple_repeat 2 42 0 1426 172 0 117 chr1 34874697 34874850 -247318814 - AluJb SINE Alu -141 171 2 952 216 108 4 chr1 34874890 34875140 -247318524 + LTR16C LTR ERVL 202 477 -14 777 283 26 4 chr1 34875707 34875933 -247317731 + MIR SINE MIR 20 250 -12 625 206 45 81 chr1 34875947 34876031 -247317633 + L1ME2 LINE L1 5695 5781 -340 1939 136 34 14 chr1 34876031 34876325 -247317339 + AluSx SINE Alu 1 300 -12 625 206 45 81 chr1 34876325 34876487 -247317177 + L1ME2 LINE L1 5781 5932 -189 1968 131 0 10 chr1 34876497 34876788 -247316876 + AluSx SINE Alu 1 288 -24 296 281 65 29 chr1 34876845 34876984 -247316680 + HAL1b LINE L1 1192 1335 -13 2161 103 43 0 chr1 34877017 34877299 -247316365 + AluSg SINE Alu 2 295 -15 241 290 234 0 chr1 34877379 34877503 -247316161 + MIR SINE MIR 86 238 -24 235 150 33 0 chr1 34877681 34877741 -247315923 + GA-rich Low_complexity Low_complexity 1 62 0 231 225 14 159 chr1 34877966 34878104 -247315560 + MER5A DNA MER1_type 70 187 -2 246 249 27 131 chr1 34878309 34878606 -247315058 + L1MC4a LINE L1 5788 6053 -1755 2447 86 0 0 chr1 34879216 34879517 -247314147 + AluSg SINE Alu 3 303 -7 2296 208 14 54 chr1 34879524 34879855 -247313809 + L1ME1 LINE L1 5609 5909 -257 2633 56 0 3 chr1 34879855 34880160 -247313504 + AluY SINE Alu 1 304 -7 2296 208 14 54 chr1 34880160 34880404 -247313260 + L1ME1 LINE L1 5909 6161 -5 465 219 21 0 chr1 34880468 34880564 -247313100 + L1ME2 LINE L1 6024 6121 -43 1983 144 3 16 chr1 34880566 34880879 -247312785 - AluJb SINE Alu -3 309 1 606 247 169 25 chr1 34881047 34881418 -247312246 - L2 LINE L2 -167 3146 2830 2443 68 3 0 chr1 34881418 34881710 -247311954 - AluSp SINE Alu -20 293 1 606 247 169 25 chr1 34881710 34881897 -247311767 - L2 LINE L2 -483 2830 2452 1660 159 0 39 chr1 34882043 34882326 -247311338 + AluJo SINE Alu 1 272 -40 553 254 69 0 chr1 34882477 34882607 -247311057 + MER20B DNA MER1_type 96 234 -549 2112 104 0 0 chr1 34882642 34882911 -247310753 + AluSx SINE Alu 1 269 -43 779 220 101 10 chr1 34882911 34883120 -247310544 + MER20B DNA MER1_type 413 640 -143 622 251 74 11 chr1 34883165 34883340 -247310324 - MIR SINE MIR -72 190 5 254 171 53 40 chr1 34883348 34883424 -247310240 + MER20B DNA MER1_type 677 753 -30 2292 97 7 0 chr1 34883581 34883889 -247309775 - AluSx SINE Alu -2 310 1 2105 138 11 28 chr1 34884081 34884442 -247309222 - L1MB5 LINE L1 -8 6166 5812 4360 141 48 68 chr1 34884455 34884824 -247308840 - L1MB5 LINE L1 -8 6166 5791 2328 104 0 13 chr1 34884824 34885131 -247308533 - AluSx SINE Alu -9 303 1 4360 141 48 68 chr1 34885131 34885271 -247308393 - L1MB5 LINE L1 -383 5791 5650 2393 80 7 0 chr1 34885271 34885572 -247308092 - AluSp SINE Alu 0 313 11 4360 141 48 68 chr1 34885572 34885963 -247307701 - L1MB5 LINE L1 -524 5650 5283 23 0 0 0 chr1 34885974 34885997 -247307667 + AT_rich Low_complexity Low_complexity 1 23 0 2389 90 6 10 chr1 34885997 34886309 -247307355 + AluSq SINE Alu 1 311 -2 224 282 97 10 chr1 34886441 34886544 -247307120 - L2 LINE L2 -585 2729 2618 1130 137 0 33 chr1 34886675 34886692 -247306972 + MLT1C LTR MaLR 1 17 -450 2040 135 96 3 chr1 34886692 34887026 -247306638 - MLT1A1 LTR MaLR 0 365 1 1130 137 0 33 chr1 34887026 34887190 -247306474 + MLT1C LTR MaLR 17 176 -291 1725 107 9 0 chr1 34887197 34887421 -247306243 + AluSg/x SINE Alu 71 296 -16 468 221 0 25 chr1 34887424 34887546 -247306118 - MIR SINE MIR -140 122 4 1514 171 0 4 chr1 34887646 34887891 -247305773 + AluJb SINE Alu 5 248 -64 1997 123 7 7 chr1 34887892 34888185 -247305479 + AluJb SINE Alu 5 297 -15 679 284 47 55 chr1 34888191 34888571 -247305093 - L2 LINE L2 -850 2464 2088 3443 163 94 71 chr1 34888754 34888830 -247304834 - MER63C DNA MER1_type -139 921 848 2344 99 3 0 chr1 34888830 34889123 -247304541 - AluSp SINE Alu -19 294 1 3443 163 94 71 chr1 34889123 34889559 -247304105 - MER63C DNA MER1_type -212 848 380 1548 198 29 0 chr1 34889559 34889832 -247303832 + AluJo SINE Alu 1 281 -31 3443 163 94 71 chr1 34889832 34890172 -247303492 - MER63C DNA MER1_type -680 380 49 317 304 0 0 chr1 34890172 34890264 -247303400 + (TA)n Simple_repeat Simple_repeat 2 93 0 252 337 22 0 chr1 34890602 34890694 -247302970 - L2 LINE L2 -2868 446 353 415 288 50 0 chr1 34890735 34890874 -247302790 + MIR SINE MIR 4 149 -113 2531 60 0 3 chr1 34890923 34891224 -247302440 + AluY SINE Alu 1 300 -11 5465 153 24 24 chr1 34891233 34892397 -247301267 + L1PA16 LINE L1 4150 5323 -843 2013 161 0 0 chr1 34892397 34892701 -247300963 + AluJo SINE Alu 1 304 -8 5465 153 24 24 chr1 34892701 34893351 -247300313 + L1PA16 LINE L1 5323 5971 -195 2035 141 0 3 chr1 34893351 34893641 -247300023 + AluSx SINE Alu 1 289 -23 2263 106 0 0 chr1 34893680 34893973 -247299691 + AluSg SINE Alu 5 297 -13 271 259 215 63 chr1 34895232 34895283 -247298381 + MIR SINE MIR 4 46 -216 2263 109 6 3 chr1 34895283 34895595 -247298069 - AluSq SINE Alu 0 313 1 271 259 215 63 chr1 34895595 34895775 -247297889 + MIR SINE MIR 46 262 0 2525 74 3 0 chr1 34896025 34896335 -247297329 + AluY SINE Alu 1 311 0 231 284 32 21 chr1 34896706 34896801 -247296863 - MER5B DNA MER1_type -76 102 7 1171 150 0 0 chr1 34896832 34896999 -247296665 - AluJb SINE Alu -87 225 59 451 269 43 28 chr1 34896999 34897140 -247296524 + L2 LINE L2 3138 3280 -33 2258 118 0 0 chr1 34897519 34897816 -247295848 + AluSx SINE Alu 1 297 -15 231 193 0 53 chr1 34897837 34897894 -247295770 - MLT1K LTR MaLR -353 235 182 572 209 2 36 chr1 34898053 34898197 -247295467 - L1MB2 LINE L1 -27 6144 6022 1179 152 24 80 chr1 34898218 34898468 -247295196 - L1MB2 LINE L1 -516 5668 5433 523 287 69 46 chr1 34898605 34898753 -247294911 - L2 LINE L2 -3 3310 3154 2292 97 19 13 chr1 34898753 34899063 -247294601 + AluSp SINE Alu 1 312 -1 523 287 69 46 chr1 34899063 34899130 -247294534 - L2 LINE L2 -159 3154 3090 222 284 53 0 chr1 34899263 34899358 -247294306 - L2 LINE L2 -1201 2113 2014 1761 180 109 33 chr1 34899362 34899813 -247293851 - MLT1D LTR MaLR 0 505 21 197 188 145 29 chr1 34899845 34899914 -247293750 - L2 LINE L2 -1298 2016 1940 572 211 0 0 chr1 34899916 34900020 -247293644 + FLAM_C SINE Alu 5 108 -35 2303 92 0 0 chr1 34900028 34900331 -247293333 + AluSx SINE Alu 1 303 0 189 0 0 0 chr1 34900354 34900375 -247293289 + (A)n Simple_repeat Simple_repeat 1 21 0 404 57 38 0 chr1 34900375 34900428 -247293236 - AluSp/q SINE Alu -19 294 240 1522 96 5 0 chr1 34900429 34900626 -247293038 - AluSx SINE Alu -114 198 1 935 160 60 0 chr1 34900636 34900786 -247292878 + FRAM SINE Alu 1 154 -22 1372 249 224 51 chr1 34900790 34900819 -247292845 - L2 LINE L2 -1377 1937 1914 1946 128 44 3 chr1 34900819 34901116 -247292548 - AluSx SINE Alu -3 309 1 1372 249 224 51 chr1 34901116 34901460 -247292204 - L2 LINE L2 -1400 1914 1631 2346 94 7 0 chr1 34901460 34901757 -247291907 + AluSg SINE Alu 1 299 -11 1372 249 224 51 chr1 34901757 34901984 -247291680 - L2 LINE L2 -1683 1631 1445 889 183 12 18 chr1 34901984 34902148 -247291516 - FAM SINE Alu -11 164 2 1372 249 224 51 chr1 34902148 34902388 -247291276 - L2 LINE L2 -1869 1445 949 973 184 10 46 chr1 34902397 34902593 -247291071 - AluJb SINE Alu -38 274 86 359 253 0 22 chr1 34902915 34903006 -247290658 + FAM SINE Alu 82 170 -5 1699 173 20 23 chr1 34903256 34903557 -247290107 - AluJb SINE Alu -12 300 1 438 20 0 0 chr1 34903934 34903985 -247289679 + (CA)n Simple_repeat Simple_repeat 1 51 0 766 0 21 0 chr1 34905311 34905405 -247288259 + (TA)n Simple_repeat Simple_repeat 2 97 0 208 135 0 0 chr1 34905413 34905450 -247288214 + (T)n Simple_repeat Simple_repeat 1 37 0 2423 68 7 3 chr1 34906591 34906883 -247286781 + AluSc SINE Alu 1 293 -16 1782 136 3 58 chr1 34907483 34907793 -247285871 - AluJb SINE Alu -19 293 1 201 74 0 0 chr1 34910568 34910595 -247283069 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2007 68 0 8 chr1 34910596 34910859 -247282805 - L1P5 LINE L1 -481 5670 5410 1678 168 25 4 chr1 34911288 34911562 -247282102 - AluJb SINE Alu -32 280 1 1070 174 12 0 chr1 34912553 34912720 -247280944 - AluJb SINE Alu -11 301 133 1552 208 44 7 chr1 34912726 34913024 -247280640 - AluJb SINE Alu -3 309 1 24 0 0 0 chr1 34913186 34913210 -247280454 + AT_rich Low_complexity Low_complexity 1 24 0 2485 78 0 3 chr1 34913261 34913570 -247280094 + AluSg SINE Alu 1 308 -2 706 256 47 35 chr1 34913654 34913953 -247279711 + L1ME LINE L1 5520 5823 -298 302 179 35 14 chr1 34914729 34914811 -247278853 + MIR SINE MIR 84 144 -64 2145 73 91 0 chr1 34914891 34915165 -247278499 + AluSc SINE Alu 1 299 -10 2293 81 10 0 chr1 34915166 34915461 -247278203 + AluY SINE Alu 1 298 -13 416 257 74 20 chr1 34915664 34915812 -247277852 + MIR SINE MIR 23 178 -84 2419 95 3 0 chr1 34917042 34917348 -247276316 + AluSp SINE Alu 1 307 -6 2378 105 3 0 chr1 34917359 34917664 -247276000 + AluSp SINE Alu 1 306 -7 2360 103 0 0 chr1 34917734 34918035 -247275629 - AluSx SINE Alu -11 301 1 328 280 21 21 chr1 34918415 34918508 -247275156 - MIR SINE MIR -75 133 41 2177 104 14 0 chr1 34919400 34919689 -247273975 + AluSp SINE Alu 1 293 -20 216 338 0 13 chr1 34919703 34919780 -247273884 - MIR SINE MIR -85 123 48 462 18 0 0 chr1 34919780 34919835 -247273829 + (TTTC)n Simple_repeat Simple_repeat 2 56 0 1737 153 28 0 chr1 34919837 34920119 -247273545 - AluJb SINE Alu -22 290 1 1987 111 75 0 chr1 34920126 34920406 -247273258 - AluSg SINE Alu -9 301 1 1794 126 3 69 chr1 34920408 34920527 -247273137 - AluJo SINE Alu -16 296 171 2870 10 0 0 chr1 34920527 34920831 -247272833 - AluY SINE Alu -7 304 1 1794 126 3 69 chr1 34920831 34921028 -247272636 - AluJo SINE Alu -141 171 1 262 289 44 9 chr1 34922110 34922224 -247271440 + L1MC4a LINE L1 5796 5913 -1895 2320 67 0 20 chr1 34922670 34922969 -247270695 + AluY SINE Alu 1 293 -18 2036 106 53 7 chr1 34923064 34923347 -247270317 + AluSc SINE Alu 4 299 -10 183 42 0 0 chr1 34923347 34923371 -247270293 + (TA)n Simple_repeat Simple_repeat 2 25 0 874 273 177 37 chr1 34923842 34924365 -247269299 - L2 LINE L2 -1 3312 2646 2415 102 0 38 chr1 34924365 34924737 -247268927 + L1PA15 LINE L1 5808 6165 0 874 273 177 37 chr1 34924737 34924953 -247268711 - L2 LINE L2 -667 2646 2462 28 0 0 0 chr1 34925345 34925373 -247268291 + AT_rich Low_complexity Low_complexity 1 28 0 227 71 91 40 chr1 34925378 34925477 -247268187 + (TATAA)n Simple_repeat Simple_repeat 5 108 0 2324 109 10 0 chr1 34925615 34925918 -247267746 + AluSx SINE Alu 1 306 -6 2478 50 7 7 chr1 34927254 34927552 -247266112 + AluY SINE Alu 1 298 -13 1670 155 8 0 chr1 34930198 34930463 -247263201 - AluJb SINE Alu -11 301 35 1692 141 44 11 chr1 34930673 34930943 -247262721 + AluSx SINE Alu 27 305 -7 188 211 141 0 chr1 34930968 34931039 -247262625 + MIR SINE MIR 122 202 -60 2226 101 10 3 chr1 34931175 34931481 -247262183 + AluSq SINE Alu 1 308 -5 341 250 40 81 chr1 34932685 34932833 -247260831 + MIR SINE MIR 3 144 -118 1495 143 26 4 chr1 34933056 34933286 -247260378 - AluJb SINE Alu -77 235 1 1497 115 0 5 chr1 34933368 34933568 -247260096 + AluSx SINE Alu 16 214 -98 248 78 0 59 chr1 34933568 34933619 -247260045 + AluSx SINE Alu 256 303 0 281 30 0 0 chr1 34933668 34933701 -247259963 + U2 snRNA snRNA 1 33 -155 230 293 6 44 chr1 34934802 34934983 -247258681 + C-rich Low_complexity Low_complexity 4 177 0 25 0 0 0 chr1 34935046 34935071 -247258593 + GC_rich Low_complexity Low_complexity 1 25 0 33 25 0 0 chr1 34935138 34935178 -247258486 + GC_rich Low_complexity Low_complexity 1 40 0 544 281 48 30 chr1 34935296 34935463 -247258201 + MLT1K LTR MaLR 127 296 -292 242 279 75 34 chr1 34935515 34935662 -247258002 - L2 LINE L2 -1004 2310 2158 1174 192 18 9 chr1 34935761 34935980 -247257684 + AluJb SINE Alu 1 221 -91 766 0 21 0 chr1 34936086 34936180 -247257484 + (TA)n Simple_repeat Simple_repeat 2 97 0 208 135 0 0 chr1 34936188 34936225 -247257439 + (T)n Simple_repeat Simple_repeat 1 37 0 2413 69 7 3 chr1 34937366 34937657 -247256007 + AluSc SINE Alu 1 292 -17 1782 136 3 58 chr1 34938257 34938567 -247255097 - AluJb SINE Alu -19 293 1 201 74 0 0 chr1 34941342 34941369 -247252295 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2007 68 0 8 chr1 34941370 34941633 -247252031 - L1P5 LINE L1 -481 5670 5410 1678 168 25 4 chr1 34942062 34942336 -247251328 - AluJb SINE Alu -32 280 1 1070 174 12 0 chr1 34943327 34943494 -247250170 - AluJb SINE Alu -11 301 133 1552 208 44 7 chr1 34943500 34943798 -247249866 - AluJb SINE Alu -3 309 1 24 0 0 0 chr1 34943960 34943984 -247249680 + AT_rich Low_complexity Low_complexity 1 24 0 2485 78 0 3 chr1 34944035 34944344 -247249320 + AluSg SINE Alu 1 308 -2 706 256 47 35 chr1 34944428 34944727 -247248937 + L1ME LINE L1 5520 5823 -298 302 179 35 14 chr1 34945503 34945585 -247248079 + MIR SINE MIR 84 144 -64 2145 73 91 0 chr1 34945665 34945939 -247247725 + AluSc SINE Alu 1 299 -10 2293 81 10 0 chr1 34945940 34946235 -247247429 + AluY SINE Alu 1 298 -13 416 257 74 20 chr1 34946438 34946586 -247247078 + MIR SINE MIR 23 178 -84 2419 95 3 0 chr1 34947816 34948122 -247245542 + AluSp SINE Alu 1 307 -6 2435 86 3 0 chr1 34948133 34948437 -247245227 + AluSx SINE Alu 1 305 -7 861 190 6 0 chr1 34948530 34948688 -247244976 + L1MA10 LINE L1 6169 6327 -7 465 219 21 0 chr1 34948745 34948841 -247244823 + L1ME2 LINE L1 6024 6121 -43 1983 144 3 16 chr1 34948843 34949156 -247244508 - AluJb SINE Alu -3 309 1 606 247 169 25 chr1 34949324 34949695 -247243969 - L2 LINE L2 -167 3146 2830 2443 68 3 0 chr1 34949695 34949987 -247243677 - AluSp SINE Alu -20 293 1 606 247 169 25 chr1 34949987 34950174 -247243490 - L2 LINE L2 -483 2830 2452 1660 159 0 39 chr1 34950320 34950603 -247243061 + AluJo SINE Alu 1 272 -40 553 254 69 0 chr1 34950754 34950884 -247242780 + MER20B DNA MER1_type 96 234 -549 2112 104 0 0 chr1 34950919 34951188 -247242476 + AluSx SINE Alu 1 269 -43 779 220 101 10 chr1 34951188 34951397 -247242267 + MER20B DNA MER1_type 413 640 -143 622 251 74 11 chr1 34951442 34951617 -247242047 - MIR SINE MIR -72 190 5 254 171 53 40 chr1 34951625 34951701 -247241963 + MER20B DNA MER1_type 677 753 -30 2245 94 7 7 chr1 34951858 34952165 -247241499 - AluSx SINE Alu -2 310 4 2091 141 11 28 chr1 34952359 34952720 -247240944 - L1MB5 LINE L1 -8 6166 5812 2479 70 3 3 chr1 34952836 34953138 -247240526 - AluSp SINE Alu -11 302 1 2208 94 0 7 chr1 34953410 34953698 -247239966 + AluSg SINE Alu 1 286 -24 2425 39 0 7 chr1 34953705 34954010 -247239654 + AluY SINE Alu 1 303 0 2187 93 0 81 chr1 34954020 34954354 -247239310 + AluSx SINE Alu 1 307 -5 1905 134 72 0 chr1 34954499 34954791 -247238873 + AluSq SINE Alu 1 313 0 457 228 24 24 chr1 34954807 34954930 -247238734 + L1ME3A LINE L1 5807 5929 -241 1939 129 7 0 chr1 34954993 34955299 -247238365 - AluSg SINE Alu 0 308 1 194 0 39 0 chr1 34955309 34955335 -247238329 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2564 171 129 75 chr1 34955336 34955359 -247238305 + L1MD2 LINE L1 5591 5611 -748 1284 137 95 141 chr1 34955359 34955665 -247237999 + AluJo SINE Alu 1 292 -20 2564 171 129 75 chr1 34955665 34956356 -247237308 + L1MD2 LINE L1 5611 6343 -16 1896 119 0 102 chr1 34956845 34957180 -247236484 - AluSx SINE Alu 0 302 2 1744 77 39 166 chr1 34957186 34957524 -247236140 - AluSc SINE Alu -10 299 5 2308 85 0 10 chr1 34957839 34958133 -247235531 + AluSc SINE Alu 1 291 -18 243 330 23 0 chr1 34958305 34958393 -247235271 - MIR SINE MIR -170 92 3 428 282 0 0 chr1 34958537 34958647 -247235017 + MIR SINE MIR 47 156 -106 2305 102 0 3 chr1 34959200 34959494 -247234170 + AluSx SINE Alu 1 293 -19 1756 150 0 59 chr1 34959537 34959857 -247233807 - AluJo SINE Alu -11 301 1 251 297 159 22 chr1 34959859 34960041 -247233623 + MIR SINE MIR 46 252 -10 915 173 25 19 chr1 34960050 34960212 -247233452 + FRAM SINE Alu 2 164 -2 1885 148 14 3 chr1 34960220 34960510 -247233154 + AluJo SINE Alu 5 297 -15 2415 108 0 0 chr1 34960524 34960830 -247232834 - AluSx SINE Alu -6 306 1 438 181 17 9 chr1 34960890 34961006 -247232658 + CT-rich Low_complexity Low_complexity 4 120 0 1434 182 8 23 chr1 34961012 34961150 -247232514 - AluJo SINE Alu -52 260 126 267 54 0 0 chr1 34961150 34961187 -247232477 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 1434 182 8 23 chr1 34961187 34961312 -247232352 - AluJo SINE Alu -186 126 1 1732 167 38 0 chr1 34961401 34961688 -247231976 - AluJo SINE Alu -14 298 1 2182 118 0 0 chr1 34962028 34962325 -247231339 - AluSx SINE Alu -15 297 1 988 96 0 0 chr1 34962337 34962462 -247231202 - AluSq/x SINE Alu -188 125 1 2193 106 0 20 chr1 34963070 34963373 -247230291 + AluSx SINE Alu 10 306 -6 770 173 119 18 chr1 34963432 34963600 -247230064 + MER5A DNA MER1_type 1 185 -4 221 81 0 27 chr1 34963693 34963730 -247229934 + (TA)n Simple_repeat Simple_repeat 1 36 0 2373 77 6 26 chr1 34963876 34964189 -247229475 - AluY SINE Alu -4 307 1 32 26 0 0 chr1 34964306 34964345 -247229319 + AT_rich Low_complexity Low_complexity 1 39 0 29 28 0 0 chr1 34964757 34964793 -247228871 + AT_rich Low_complexity Low_complexity 1 36 0 2184 121 0 0 chr1 34964803 34965093 -247228571 + AluSg SINE Alu 1 290 -20 520 123 385 8 chr1 34965093 34965204 -247228460 - AluJo/FRAM SINE Alu -14 298 136 275 143 0 0 chr1 34965214 34965256 -247228408 - AluJ/FLAM SINE Alu -225 77 36 583 157 20 0 chr1 34965258 34965360 -247228304 - AluJb SINE Alu -33 279 176 2308 118 0 0 chr1 34965387 34965692 -247227972 - AluSx SINE Alu -6 306 2 23 0 0 0 chr1 34965695 34965718 -247227946 + AT_rich Low_complexity Low_complexity 1 23 0 705 241 83 29 chr1 34965766 34966044 -247227620 - LTR33 LTR ERVL -2 519 227 2359 97 7 0 chr1 34966059 34966358 -247227306 + AluSx SINE Alu 1 301 -11 1365 330 34 21 chr1 34966393 34966951 -247226713 - ERVL LTR ERVL -405 5359 4795 718 197 0 0 chr1 34967036 34967168 -247226496 - FLAM_C SINE Alu 0 133 2 1663 137 76 4 chr1 34967723 34967986 -247225678 + AluSx SINE Alu 1 282 -30 397 266 63 21 chr1 34968215 34968358 -247225306 + MIR SINE MIR 17 165 -97 25 75 0 0 chr1 34968650 34968703 -247224961 + AT_rich Low_complexity Low_complexity 1 53 0 2217 124 0 0 chr1 34968932 34969230 -247224434 + AluSx SINE Alu 1 298 -14 534 237 75 40 chr1 34969232 34969307 -247224357 + MIR SINE MIR 28 99 -163 2336 73 3 52 chr1 34969307 34969634 -247224030 - AluY SINE Alu 0 311 1 534 237 75 40 chr1 34969634 34969731 -247223933 + MIR SINE MIR 99 206 -56 1853 170 0 3 chr1 34969840 34970134 -247223530 + AluJb SINE Alu 5 297 -15 2449 74 3 0 chr1 34970356 34970652 -247223012 + AluY SINE Alu 1 297 -14 1298 141 0 0 chr1 34970825 34971002 -247222662 + AluSx SINE Alu 5 181 -131 2473 92 0 9 chr1 34971227 34971543 -247222121 + AluSq SINE Alu 1 313 0 901 277 61 83 chr1 34971618 34971993 -247221671 + L2 LINE L2 2898 3264 -8 207 261 159 0 chr1 34971995 34972064 -247221600 + L2 LINE L2 2612 2691 -623 524 316 87 21 chr1 34972077 34972390 -247221274 + L2 LINE L2 2793 3124 -189 1120 126 0 0 chr1 34972409 34972568 -247221096 - AluSx SINE Alu -153 159 1 510 245 53 40 chr1 34972601 34972752 -247220912 + L2 LINE L2 3161 3313 0 393 296 15 38 chr1 34972777 34972909 -247220755 + MARNA DNA Mariner 81 209 -377 1697 159 17 13 chr1 34972962 34973264 -247220400 + AluJo SINE Alu 1 303 -9 1824 131 0 0 chr1 34973410 34973677 -247219987 - AluSx SINE Alu -17 295 29 1903 127 34 0 chr1 34974072 34974364 -247219300 + AluSx SINE Alu 2 303 -9 603 250 0 15 chr1 34974393 34974525 -247219139 + L2 LINE L2 3184 3313 0 2067 99 0 3 chr1 34974560 34974870 -247218794 - AluSx SINE Alu 0 309 1 515 166 26 113 chr1 34975389 34975540 -247218124 - Charlie8 DNA MER1_type -2218 199 62 2053 84 29 0 chr1 34975554 34975882 -247217782 - AluSg1 SINE Alu 0 336 1 2431 37 0 7 chr1 34976032 34976329 -247217335 - AluY SINE Alu -16 295 1 415 338 61 0 chr1 34976480 34976628 -247217036 - L2 LINE L2 0 3272 3116 1785 156 0 23 chr1 34976648 34976955 -247216709 - AluJb SINE Alu -12 300 1 973 147 25 0 chr1 34977323 34977486 -247216178 + FRAM SINE Alu 1 165 -11 442 287 52 55 chr1 34977552 34977897 -247215767 - L2 LINE L2 -613 2701 2358 1898 102 29 0 chr1 34977897 34978199 -247215465 - AluSx SINE Alu 0 310 1 1217 104 0 0 chr1 34978205 34978368 -247215296 - AluSq SINE Alu -17 296 134 2042 110 0 7 chr1 34978368 34978689 -247214975 - AluSx SINE Alu 0 312 2 467 311 37 0 chr1 34979144 34979279 -247214385 - L2 LINE L2 -954 2360 2221 205 297 27 36 chr1 34979497 34979608 -247214056 + L2 LINE L2 3203 3312 -1 201 74 0 0 chr1 34979614 34979641 -247214023 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 2123 103 13 0 chr1 34979643 34979943 -247213721 - AluSg1 SINE Alu 0 309 6 407 248 18 137 chr1 34980178 34980312 -247213352 - MIR SINE MIR 0 262 114 2199 69 0 10 chr1 34980312 34980624 -247213040 - AluSg SINE Alu 0 310 1 407 248 18 137 chr1 34980624 34980666 -247212998 - MIR SINE MIR -148 114 115 2942 155 30 41 chr1 34980666 34981226 -247212438 + MLT2B3 LTR ERVL 1 554 0 407 248 18 137 chr1 34981226 34981274 -247212390 - MIR SINE MIR -146 116 64 2263 75 0 3 chr1 34981435 34981761 -247211903 + AluY SINE Alu 1 325 0 674 225 71 12 chr1 34981777 34981946 -247211718 - MIR SINE MIR -12 250 72 21 0 0 0 chr1 34981995 34982016 -247211648 + AT_rich Low_complexity Low_complexity 1 21 0 1514 148 16 12 chr1 34982036 34982292 -247211372 - AluJo SINE Alu -53 259 3 2502 43 0 3 chr1 34982305 34982608 -247211056 - AluY SINE Alu -9 302 1 765 163 0 23 chr1 34984025 34984154 -247209510 - AluJo SINE Alu -176 136 11 1492 167 33 7 chr1 34984171 34984504 -247209160 - AluJb SINE Alu 0 340 1 1066 143 4 35 chr1 34984526 34984784 -247208880 + AluJb SINE Alu 1 307 -5 278 289 0 12 chr1 34985016 34985099 -247208565 - L1MC/D LINE L1 -1930 5878 5797 329 340 30 0 chr1 34985617 34985717 -247207947 + L2 LINE L2 3162 3264 -8 2156 121 0 0 chr1 34986043 34986350 -247207314 - AluSq SINE Alu -6 307 1 23 0 0 0 chr1 34986359 34986382 -247207282 + AT_rich Low_complexity Low_complexity 1 23 0 1091 169 0 0 chr1 34986383 34986555 -247207109 - FAM SINE Alu 0 175 4 2187 217 92 57 chr1 34986559 34987223 -247206441 - L1ME3 LINE L1 -62 6100 5406 1829 164 0 0 chr1 34987223 34987516 -247206148 - AluJb SINE Alu -19 293 1 2187 217 92 57 chr1 34987516 34987589 -247206075 - L1ME3 LINE L1 -756 5406 5337 352 323 84 20 chr1 34987615 34987866 -247205798 + L2 LINE L2 2158 2424 -890 2106 104 0 0 chr1 34987949 34988238 -247205426 + AluSx SINE Alu 1 289 -23 282 56 0 0 chr1 34988238 34988274 -247205390 + (GGGA)n Simple_repeat Simple_repeat 1 36 0 683 294 99 0 chr1 34988536 34988788 -247204876 + MLT1K LTR MaLR 77 353 -235 1977 109 3 20 chr1 34988994 34989298 -247204366 - AluSx SINE Alu -13 299 1 843 238 32 0 chr1 34989305 34989494 -247204170 + MIR SINE MIR 12 206 -56 2146 110 0 0 chr1 34990006 34990296 -247203368 + AluSx SINE Alu 1 290 -22 2269 63 10 3 chr1 34990435 34990737 -247202927 - AluY SINE Alu -7 304 1 183 305 124 56 chr1 34990829 34991062 -247202602 - L2 LINE L2 -349 2965 2717 1822 128 29 0 chr1 34991453 34991727 -247201937 + AluSx SINE Alu 16 297 -15 496 211 0 11 chr1 34993027 34993117 -247200547 - FLAM_A SINE Alu -48 94 6 2151 82 21 7 chr1 34994400 34994691 -247198973 + AluSq SINE Alu 1 295 -18 2217 105 0 0 chr1 34995852 34996157 -247197507 - AluSg SINE Alu -5 305 1 227 184 0 0 chr1 34999111 34999149 -247194515 + Alu SINE Alu 108 145 -21 23 0 0 0 chr1 34999150 34999173 -247194491 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr1 34999369 34999393 -247194271 + AT_rich Low_complexity Low_complexity 1 24 0 1465 154 70 15 chr1 34999402 34999675 -247193989 - AluJo SINE Alu -24 288 1 255 158 88 18 chr1 34999681 34999738 -247193926 + MIR SINE MIR 106 166 -96 2362 70 0 0 chr1 34999862 35000160 -247193504 + AluY SINE Alu 1 298 -13 310 40 0 40 chr1 35000184 35000234 -247193430 + (TTTC)n Simple_repeat Simple_repeat 2 49 0 278 277 15 22 chr1 35000357 35000448 -247193216 + MIR SINE MIR 66 155 -61 255 291 38 13 chr1 35001048 35001127 -247192537 + MIR SINE MIR 2 82 -180 2578 170 53 63 chr1 35001239 35001361 -247192303 + L1MB3 LINE L1 4835 4957 -1227 2216 74 0 24 chr1 35001361 35001659 -247192005 + AluSx SINE Alu 1 291 -21 2578 170 53 63 chr1 35001659 35001739 -247191925 + L1MB3 LINE L1 4957 5036 -1148 1730 163 0 22 chr1 35001739 35002078 -247191586 + AluSx SINE Alu 1 312 0 2578 170 53 63 chr1 35002078 35002598 -247191066 + L1MB3 LINE L1 5036 5560 -624 2372 84 0 0 chr1 35002598 35002907 -247190757 + AluY SINE Alu 1 309 -2 2578 170 53 63 chr1 35002907 35003203 -247190461 + L1MB3 LINE L1 5560 5857 -327 1974 107 23 19 chr1 35003203 35003513 -247190151 + AluSx SINE Alu 1 311 -1 2578 170 53 63 chr1 35003513 35003872 -247189792 + L1MB3 LINE L1 5857 6183 -1 300 296 11 34 chr1 35003980 35004068 -247189596 + Charlie8 DNA MER1_type 1 86 -2331 1250 210 4 11 chr1 35004069 35004331 -247189333 - AluJo SINE Alu -52 260 1 333 311 104 0 chr1 35004394 35004529 -247189135 + L3 LINE CR1 1301 1449 -128 1699 174 52 6 chr1 35004530 35004858 -247188806 + L1MB7 LINE L1 5822 6164 -20 261 294 56 24 chr1 35004941 35005067 -247188597 - MIR SINE MIR -102 160 31 2108 124 0 0 chr1 35005098 35005396 -247188268 + AluSx SINE Alu 1 298 -14 2116 108 3 10 chr1 35006042 35006356 -247187308 + AluSx SINE Alu 1 312 0 463 266 86 0 chr1 35006395 35006534 -247187130 + MIR SINE MIR 1 151 -111 258 192 110 27 chr1 35006535 35006608 -247187056 + MLT1K LTR MaLR 3 81 -507 227 244 116 23 chr1 35006828 35006914 -247186750 + LTR67 LTR ERVL 464 557 0 2243 91 0 0 chr1 35010670 35010967 -247182697 + AluSg SINE Alu 1 297 -13 288 277 0 32 chr1 35011029 35011123 -247182541 + L2 LINE L2 2441 2531 -783 868 151 12 74 chr1 35011166 35011424 -247182240 - AluJb SINE Alu -60 252 11 1243 629 0 385 chr1 35011434 35011767 -247181897 + L2 LINE L2 2504 3412 99 1898 108 13 44 chr1 35011767 35011903 -247181761 + AluSx SINE Alu 1 140 -172 1960 111 0 4 chr1 35011903 35012210 -247181454 + AluSc SINE Alu 1 306 0 2172 105 0 6 chr1 35012215 35012529 -247181135 + AluSq SINE Alu 1 312 -1 1898 108 13 44 chr1 35012529 35012700 -247180964 + AluSx SINE Alu 144 305 -7 1243 629 0 385 chr1 35012700 35012967 -247180697 + L2 LINE L2 3411 3210 -103 288 208 104 39 chr1 35012988 35013065 -247180599 - L2 LINE L2 -4 3268 3187 235 354 57 25 chr1 35013260 35013418 -247180246 - L2 LINE L2 -706 2608 2446 853 115 0 8 chr1 35014780 35014910 -247178754 - FLAM_C SINE Alu -14 129 1 430 275 113 52 chr1 35015289 35015691 -247177973 - L2 LINE L2 -1 3312 2809 474 285 28 7 chr1 35016145 35016289 -247177375 + MIR SINE MIR 46 192 -70 408 40 0 0 chr1 35016702 35016752 -247176912 + (TG)n Simple_repeat Simple_repeat 2 51 0 2346 87 3 0 chr1 35016963 35017273 -247176391 - AluSq SINE Alu -2 311 1 228 284 14 0 chr1 35018469 35018543 -247175121 + CT-rich Low_complexity Low_complexity 1 75 0 239 311 0 19 chr1 35018604 35018707 -247174957 + (TG)n Simple_repeat Simple_repeat 2 102 0 520 269 72 106 chr1 35019040 35019064 -247174600 - L1ME4a LINE L1 -5 6116 6093 1575 184 10 7 chr1 35019064 35019358 -247174306 + AluJb SINE Alu 1 295 -17 520 269 72 106 chr1 35019358 35019504 -247174160 - L1ME4a LINE L1 -28 6093 5943 2019 117 17 0 chr1 35019504 35019802 -247173862 - AluSx SINE Alu -9 303 1 520 269 72 106 chr1 35019802 35019926 -247173738 - L1ME4a LINE L1 -178 5943 5834 1642 163 0 47 chr1 35019926 35020039 -247173625 - 7SLRNA srpRNA srpRNA -7 313 196 2477 62 0 3 chr1 35020039 35020345 -247173319 - AluY SINE Alu -6 305 1 1642 163 0 47 chr1 35020345 35020550 -247173114 - 7SLRNA srpRNA srpRNA -124 196 10 520 269 72 106 chr1 35020550 35020629 -247173035 - L1ME4a LINE L1 -287 5834 5754 1923 110 53 0 chr1 35020634 35020915 -247172749 - AluSx SINE Alu -15 297 2 1104 60 0 0 chr1 35020915 35021049 -247172615 - AluY SINE Alu -177 134 1 368 291 168 11 chr1 35021049 35021228 -247172436 - L1ME4a LINE L1 -2053 5755 5549 2298 68 0 32 chr1 35021246 35021556 -247172108 + AluY SINE Alu 2 311 0 21 36 0 0 chr1 35021642 35021670 -247171994 + AT_rich Low_complexity Low_complexity 1 28 0 793 237 0 13 chr1 35021745 35021894 -247171770 + FRAM SINE Alu 1 149 -153 190 0 0 0 chr1 35021894 35021915 -247171749 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 270 56 0 0 chr1 35022043 35022079 -247171585 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 863 175 0 0 chr1 35022150 35022287 -247171377 - AluY SINE Alu -29 282 146 2299 119 0 0 chr1 35022327 35022622 -247171042 + AluSx SINE Alu 1 295 -17 280 264 52 45 chr1 35022987 35023142 -247170522 - HAL1b LINE L1 -447 901 746 2336 116 0 3 chr1 35023306 35023617 -247170047 - AluSx SINE Alu -2 310 1 2616 68 0 0 chr1 35023624 35023935 -247169729 - AluY SINE Alu 0 311 1 255 175 70 0 chr1 35024059 35024116 -247169548 - MIR SINE MIR -96 166 106 1601 156 69 14 chr1 35024122 35024398 -247169266 + AluJo SINE Alu 1 291 -21 24 0 0 0 chr1 35024404 35024428 -247169236 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr1 35024624 35024647 -247169017 + AT_rich Low_complexity Low_complexity 1 23 0 1421 174 78 4 chr1 35024648 35024906 -247168758 - AluJo SINE Alu -31 281 5 443 252 74 22 chr1 35024946 35025039 -247168625 + MIR SINE MIR 117 221 -41 2199 88 35 3 chr1 35025039 35025322 -247168342 + AluSp SINE Alu 1 292 -21 443 252 74 22 chr1 35025322 35025363 -247168301 + MIR SINE MIR 221 258 -4 1186 105 189 0 chr1 35025924 35026115 -247167549 - MER30 DNA MER1_type 0 230 4 259 206 82 27 chr1 35026122 35026195 -247167469 - MIR SINE MIR -61 201 125 2346 86 0 3 chr1 35026406 35026698 -247166966 + AluSg SINE Alu 1 291 -19 619 243 166 77 chr1 35028053 35028415 -247165249 - L2 LINE L2 -4 3309 2916 1262 225 48 10 chr1 35028419 35028708 -247164956 - AluJb SINE Alu -12 300 1 198 103 0 0 chr1 35028713 35028742 -247164922 + (T)n Simple_repeat Simple_repeat 1 29 0 2548 41 3 3 chr1 35028756 35029049 -247164615 + AluY SINE Alu 1 293 -18 2287 88 7 3 chr1 35029073 35029368 -247164296 + AluSq SINE Alu 1 296 -17 1371 165 0 48 chr1 35029389 35029638 -247164026 - AluJo SINE Alu -75 237 1 1006 174 12 0 chr1 35029893 35030054 -247163610 + AluSg/x SINE Alu 133 295 -15 2228 123 0 22 chr1 35030111 35030428 -247163236 + AluSx SINE Alu 2 311 -1 1331 204 99 0 chr1 35030523 35030807 -247162857 + AluJo SINE Alu 1 312 0 190 318 121 15 chr1 35031961 35032093 -247161571 + L2 LINE L2 3168 3313 0 458 254 36 9 chr1 35032769 35032879 -247160785 + MER81 DNA DNA 1 113 -1 181 267 22 22 chr1 35033096 35033141 -247160523 + MIR SINE MIR 33 77 -185 270 0 0 0 chr1 35033163 35033193 -247160471 + (T)n Simple_repeat Simple_repeat 1 30 0 2457 77 0 0 chr1 35033256 35033554 -247160110 + AluY SINE Alu 1 298 -13 2422 77 3 0 chr1 35035575 35035873 -247157791 - AluSp SINE Alu -14 299 1 2156 135 0 0 chr1 35035873 35036168 -247157496 - AluSx SINE Alu -16 296 1 532 221 326 11 chr1 35036212 35036402 -247157262 - MIR SINE MIR 0 262 13 2372 68 0 19 chr1 35036432 35036743 -247156921 + AluY SINE Alu 1 305 -6 2034 91 42 3 chr1 35036872 35037159 -247156505 + AluSq SINE Alu 1 298 -15 683 191 7 29 chr1 35037181 35037317 -247156347 + FLAM_C SINE Alu 1 133 0 22 0 0 0 chr1 35037317 35037339 -247156325 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr1 35037444 35037467 -247156197 + GC_rich Low_complexity Low_complexity 1 23 0 2496 88 0 0 chr1 35037467 35037773 -247155891 - AluSg SINE Alu -4 306 1 612 230 24 8 chr1 35037785 35037911 -247155753 - MIR SINE MIR -114 148 21 231 323 47 39 chr1 35038398 35038525 -247155139 - L2 LINE L2 0 3272 3145 206 350 60 8 chr1 35038989 35039106 -247154558 + L2 LINE L2 3136 3258 -14 548 290 54 91 chr1 35039351 35039801 -247153863 + L2 LINE L2 2781 3216 -56 198 0 0 0 chr1 35039801 35039823 -247153841 + (T)n Simple_repeat Simple_repeat 1 22 0 22 0 0 0 chr1 35039846 35039868 -247153796 + GC_rich Low_complexity Low_complexity 1 22 0 2325 121 0 3 chr1 35040004 35040311 -247153353 - AluSx SINE Alu -6 306 1 1105 196 38 50 chr1 35040324 35040361 -247153303 - L1ME2 LINE L1 -10 6154 6118 1980 153 3 3 chr1 35040361 35040655 -247153009 - AluJb SINE Alu -18 294 1 1105 196 38 50 chr1 35040655 35040878 -247152786 - L1ME2 LINE L1 -46 6118 5894 2248 108 0 13 chr1 35040878 35041183 -247152481 - AluSg SINE Alu -9 301 1 2324 85 41 0 chr1 35041188 35041482 -247152182 - AluY SINE Alu -5 306 1 1105 196 38 50 chr1 35041482 35041531 -247152133 - L1ME2 LINE L1 -274 5890 5842 2317 85 0 19 chr1 35041546 35041853 -247151811 - AluSq SINE Alu -12 301 1 2352 73 0 23 chr1 35042001 35042304 -247151360 + AluY SINE Alu 1 296 -15 401 291 119 73 chr1 35042322 35042519 -247151145 - L2 LINE L2 -5 3267 3080 1931 90 76 11 chr1 35042519 35042796 -247150868 + AluSx SINE Alu 1 295 -17 1734 81 13 0 chr1 35042796 35043030 -247150634 + L1PA5 LINE L1 5918 6154 0 401 291 119 73 chr1 35043030 35043315 -247150349 - L2 LINE L2 -192 3080 2751 2233 119 0 0 chr1 35043315 35043608 -247150056 + AluSq SINE Alu 1 293 -20 401 291 119 73 chr1 35043608 35043743 -247149921 - L2 LINE L2 -521 2751 2624 315 225 111 13 chr1 35043821 35043935 -247149729 - MIR SINE MIR -62 146 16 2363 78 0 25 chr1 35044294 35044614 -247149050 + AluSx SINE Alu 1 312 0 992 175 44 0 chr1 35044619 35044779 -247148885 + AluJb SINE Alu 129 295 -17 201 229 300 0 chr1 35044862 35044932 -247148732 - L2 LINE L2 -12 3301 3211 2145 110 24 0 chr1 35045192 35045483 -247148181 - AluSg SINE Alu -12 298 1 656 121 0 0 chr1 35045498 35045589 -247148075 + AluSg/x SINE Alu 204 294 -15 289 263 12 25 chr1 35045626 35045706 -247147958 + MIR SINE MIR 78 156 -106 569 185 0 104 chr1 35045750 35045807 -247147857 + MIR SINE MIR 14 51 -211 1663 187 27 10 chr1 35045807 35046106 -247147558 + AluJo SINE Alu 1 304 -8 569 185 0 104 chr1 35046106 35046183 -247147481 + MIR SINE MIR 51 134 -128 2305 96 3 3 chr1 35046800 35047101 -247146563 - AluY SINE Alu -10 301 1 1155 95 0 0 chr1 35047101 35047249 -247146415 - AluY SINE Alu -20 291 144 2374 75 24 0 chr1 35047289 35047583 -247146081 + AluY SINE Alu 1 301 -10 2327 94 10 0 chr1 35047594 35047893 -247145771 - AluSp SINE Alu -11 302 1 950 105 0 0 chr1 35047893 35048026 -247145638 - AluSg/x SINE Alu -6 304 172 844 179 61 30 chr1 35048026 35048107 -247145557 - MER33 DNA MER1_type -88 74 1 1523 144 15 102 chr1 35048107 35048440 -247145224 - AluJb SINE Alu -8 304 1 2003 167 0 0 chr1 35048444 35048749 -247144915 - AluJb SINE Alu -7 305 1 844 179 61 30 chr1 35048749 35048898 -247144766 - MER33 DNA MER1_type -167 4294967291 1 2451 236 80 50 chr1 35049228 35049467 -247144197 + HAL1 LINE L1 744 974 -1533 2518 78 0 0 chr1 35049467 35049763 -247143901 - AluSg SINE Alu -14 296 1 2451 236 80 50 chr1 35049763 35050368 -247143296 + HAL1 LINE L1 974 1633 -874 2500 85 7 0 chr1 35050368 35050673 -247142991 + AluSg SINE Alu 1 307 -3 2451 236 80 50 chr1 35050673 35050958 -247142706 + HAL1 LINE L1 1633 1908 -599 210 37 0 0 chr1 35051220 35051247 -247142417 + (TG)n Simple_repeat Simple_repeat 2 28 0 464 186 0 0 chr1 35051248 35051318 -247142346 - AluSg/x SINE Alu -29 281 212 721 193 8 0 chr1 35051320 35051439 -247142225 + AluSc SINE Alu 131 250 -59 355 118 0 0 chr1 35051440 35051491 -247142173 - AluSp/q SINE Alu -96 207 157 2391 103 0 3 chr1 35051512 35051824 -247141840 + AluY SINE Alu 1 311 0 2002 105 6 32 chr1 35051852 35052167 -247141497 + AluSp SINE Alu 1 307 -6 1667 94 7 51 chr1 35052189 35052465 -247141199 + AluY SINE Alu 18 281 -30 2336 116 0 3 chr1 35052503 35052814 -247140850 + AluSx SINE Alu 1 310 -2 280 264 52 45 chr1 35052978 35053133 -247140531 + HAL1b LINE L1 746 901 -447 2280 104 0 16 chr1 35053725 35054032 -247139632 + AluSx SINE Alu 1 302 -10 264 283 62 41 chr1 35054141 35054286 -247139378 - MIR SINE MIR -26 236 89 472 301 6 32 chr1 35054576 35054732 -247138932 - MIR3 SINE MIR -41 167 16 25 0 0 0 chr1 35055070 35055095 -247138569 + AT_rich Low_complexity Low_complexity 1 25 0 653 283 53 11 chr1 35056024 35056211 -247137453 - MIR SINE MIR -17 245 51 2135 131 3 0 chr1 35056218 35056515 -247137149 + AluSx SINE Alu 1 298 -14 2009 94 9 94 chr1 35056515 35056844 -247136820 + AluSp SINE Alu 1 301 -12 209 285 74 116 chr1 35057050 35057292 -247136372 - L2 LINE L2 -227 3045 2814 264 301 113 74 chr1 35057517 35057773 -247135891 - L2 LINE L2 -10 3262 2997 1665 97 4 82 chr1 35057780 35057916 -247135748 + AluSx SINE Alu 1 109 -203 2454 90 0 6 chr1 35057916 35058228 -247135436 + AluSg SINE Alu 1 310 0 1665 97 4 82 chr1 35058228 35058348 -247135316 + AluSx SINE Alu 109 237 -75 224 288 168 8 chr1 35058513 35058638 -247135026 + MIR SINE MIR 72 216 -46 2409 78 0 38 chr1 35058639 35058958 -247134706 + AluSg SINE Alu 1 307 -3 2444 78 0 0 chr1 35060093 35060387 -247133277 - AluY SINE Alu -17 294 1 1818 168 3 26 chr1 35060387 35060691 -247132973 - AluJo SINE Alu -15 297 1 210 266 23 86 chr1 35060691 35060759 -247132905 - MIR SINE MIR -4 258 200 2303 120 0 0 chr1 35060759 35061067 -247132597 + AluSq SINE Alu 1 308 -5 210 266 23 86 chr1 35061067 35061126 -247132538 - MIR SINE MIR -62 200 139 2251 120 0 0 chr1 35061226 35061525 -247132139 + AluSg SINE Alu 1 299 -11 2231 114 3 16 chr1 35061525 35061831 -247131833 + AluSg SINE Alu 1 302 -8 2402 98 0 13 chr1 35062396 35062711 -247130953 + AluSx SINE Alu 2 312 0 339 304 103 46 chr1 35062825 35063019 -247130645 + MIR SINE MIR 58 262 0 356 264 211 43 chr1 35063264 35063472 -247130192 + MIR SINE MIR 14 256 -6 220 217 169 12 chr1 35063549 35063632 -247130032 + MIR SINE MIR 34 129 -133 1531 128 61 51 chr1 35064579 35064674 -247128990 + MER2 DNA MER2_type 6 99 -246 2160 99 0 19 chr1 35064674 35064986 -247128678 + AluSx SINE Alu 1 306 -6 1531 128 61 51 chr1 35064986 35065202 -247128462 + MER2 DNA MER2_type 99 320 -25 764 189 13 189 chr1 35065399 35065441 -247128223 - MIR SINE MIR -4 258 210 2586 62 3 0 chr1 35065441 35065747 -247127917 - AluSp SINE Alu -6 307 1 764 189 13 189 chr1 35065747 35066006 -247127658 - MIR SINE MIR -52 210 10 1043 105 0 0 chr1 35066606 35066739 -247126925 + AluSq/x SINE Alu 1 133 -179 243 182 23 0 chr1 35066817 35066861 -247126803 - MIR3 SINE MIR -30 178 134 1727 163 0 21 chr1 35066891 35067056 -247126608 - AluSq SINE Alu -17 296 138 2350 93 0 31 chr1 35067056 35067378 -247126286 - AluSx SINE Alu 0 312 1 1727 163 0 21 chr1 35067378 35067495 -247126169 - AluSq SINE Alu -175 138 20 2232 99 26 3 chr1 35068139 35068442 -247125222 + AluSp SINE Alu 2 311 -2 247 263 22 66 chr1 35068542 35068614 -247125050 - L1ME4a LINE L1 0 6121 6056 2206 101 7 3 chr1 35068614 35068910 -247124754 + AluSc SINE Alu 1 297 -12 247 263 22 66 chr1 35068910 35068974 -247124690 - L1ME4a LINE L1 -65 6056 5991 361 174 0 0 chr1 35069028 35069097 -247124567 - LTR30 LTR ERV1 -102 620 552 432 289 75 11 chr1 35069435 35069622 -247124042 - L1MC4a LINE L1 -312 5809 5628 2126 128 7 0 chr1 35069680 35069970 -247123694 + AluSx SINE Alu 1 292 -20 307 294 113 57 chr1 35070122 35070299 -247123365 - MIR SINE MIR -29 233 47 1345 106 0 11 chr1 35070617 35070830 -247122834 + AluSg/x SINE Alu 105 315 0 818 268 96 30 chr1 35070832 35071134 -247122530 - MLT1K LTR MaLR -150 438 117 365 264 35 49 chr1 35071279 35071423 -247122241 - L2 LINE L2 -1 3312 3171 1723 150 8 4 chr1 35071570 35071824 -247121840 + AluJo SINE Alu 37 291 -21 859 245 43 51 chr1 35071911 35072164 -247121500 - MIR SINE MIR 0 262 12 709 232 87 93 chr1 35072372 35072682 -247120982 + MER102a DNA MER1_type 9 316 -14 1779 150 0 70 chr1 35072961 35073274 -247120390 + AluJb SINE Alu 7 297 -15 2136 135 0 6 chr1 35073276 35073587 -247120077 + AluSx SINE Alu 1 309 -3 2294 92 3 0 chr1 35074336 35074647 -247119017 - AluSp SINE Alu 0 312 1 479 260 215 23 chr1 35074667 35074886 -247118778 - MIR SINE MIR 0 262 2 575 163 0 0 chr1 35075773 35075865 -247117799 + AluJ/FLAM SINE Alu 2 93 -219 180 77 0 0 chr1 35075888 35075914 -247117750 + (TAA)n Simple_repeat Simple_repeat 1 26 0 1773 102 0 4 chr1 35075975 35076200 -247117464 + AluSx SINE Alu 1 224 -88 2118 114 0 38 chr1 35076203 35076518 -247117146 + AluSq SINE Alu 1 303 -10 2157 111 0 0 chr1 35076527 35076806 -247116858 + AluSx SINE Alu 1 279 -33 270 0 0 0 chr1 35076806 35076836 -247116828 + (CA)n Simple_repeat Simple_repeat 1 30 0 422 241 132 61 chr1 35076851 35077063 -247116601 - MIR SINE MIR -26 236 10 225 318 64 9 chr1 35077060 35077170 -247116494 - MIR SINE MIR -61 201 86 * 1813 112 0 35 chr1 35077644 35077903 -247115761 - AluSx SINE Alu -53 259 10 207 288 0 17 chr1 35078847 35078906 -247114758 - L3 LINE CR1 -3 1574 1517 2508 54 0 3 chr1 35079133 35079431 -247114233 + AluY SINE Alu 1 297 -14 239 275 38 25 chr1 35079538 35079618 -247114046 - L3 LINE CR1 -74 1503 1423 2338 88 3 38 chr1 35079655 35079974 -247113690 - AluSc SINE Alu -1 308 1 311 0 0 25 chr1 35080080 35080120 -247113544 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 772 234 7 0 chr1 35080122 35080267 -247113397 - FRAM SINE Alu -30 146 1 331 214 194 0 chr1 35080333 35080436 -247113228 + L2 LINE L2 3191 3313 0 533 232 98 68 chr1 35080629 35080792 -247112872 + L1ME4a LINE L1 5634 5791 -330 2296 96 0 10 chr1 35080792 35081094 -247112570 + AluSg SINE Alu 1 299 -11 533 232 98 68 chr1 35081094 35081298 -247112366 + L1ME4a LINE L1 5791 6008 -113 2169 89 11 7 chr1 35081302 35081608 -247112056 + AluSp SINE Alu 1 307 0 237 169 0 0 chr1 35081702 35081749 -247111915 - L1MB7 LINE L1 0 6178 6132 1985 131 28 3 chr1 35081782 35082072 -247111592 - AluSx SINE Alu -15 297 1 2325 110 3 0 chr1 35082114 35082422 -247111242 - AluSg1 SINE Alu 0 309 1 1574 194 3 10 chr1 35082444 35082738 -247110926 + AluJb SINE Alu 7 298 -14 251 297 168 20 chr1 35082875 35082976 -247110688 - L2 LINE L2 -12 3260 3145 356 304 158 16 chr1 35083279 35083463 -247110201 - MIR SINE MIR -30 232 23 346 302 59 31 chr1 35083609 35083831 -247109833 - L2 LINE L2 -181 3091 2864 219 36 0 0 chr1 35084340 35084368 -247109296 + (GA)n Simple_repeat Simple_repeat 1 28 0 321 348 29 14 chr1 35084678 35084816 -247108848 - MIR SINE MIR -95 167 28 2318 95 0 3 chr1 35084885 35085180 -247108484 + AluSc SINE Alu 1 294 -15 1790 106 0 0 chr1 35085234 35085461 -247108203 + AluSq SINE Alu 1 227 -86 1257 161 51 22 chr1 35085461 35085734 -247107930 + L1M4 LINE L1 4169 4449 -1697 1148 180 4 44 chr1 35085738 35085881 -247107783 + AluJb SINE Alu 6 138 -174 2289 97 14 0 chr1 35085881 35086171 -247107493 + AluY SINE Alu 1 294 -17 1148 180 4 44 chr1 35086171 35086255 -247107409 + AluJb SINE Alu 138 224 -88 24 0 0 0 chr1 35136320 35136344 -247057320 + AT_rich Low_complexity Low_complexity 1 24 0 1136 214 46 41 chr1 35136344 35136713 -247056951 - L1MA7 LINE L1 0 6291 5921 2199 256 99 55 chr1 35136890 35138590 -247055074 - L1M4 LINE L1 -701 5473 3671 1034 222 59 5 chr1 35138619 35138839 -247054825 - MLT1A1 LTR MaLR 0 365 134 1150 200 8 47 chr1 35138839 35139074 -247054590 - MSTD LTR MaLR 0 396 171 1939 250 65 32 chr1 35139187 35139844 -247053820 + L1ME1 LINE L1 5488 6166 0 651 289 36 0 chr1 35139952 35140177 -247053487 + MIR SINE MIR 4 236 -26 543 210 37 2 chr1 35140282 35140417 -247053247 - L1MA9 LINE L1 -281 5875 5736 * 1620 177 47 44 chr1 35140412 35140819 -247052845 + L1MA9 LINE L1 5871 6278 -34 645 287 55 38 chr1 35140827 35141064 -247052600 + MIR SINE MIR 20 260 -2 787 248 124 0 chr1 35141095 35141337 -247052327 + Charlie2b DNA MER1_type 881 1152 -1630 330 216 23 0 chr1 35141437 35141525 -247052139 + L1M4 LINE L1 4417 4506 -1640 767 243 110 0 chr1 35141660 35141952 -247051712 + L1M4 LINE L1 4735 5058 -1088 * 26523 134 10 62 chr1 35141949 35146894 -247046770 - L1P LINE L1 -1081 5065 377 578 85 0 0 chr1 35146904 35146986 -247046678 + L1P LINE L1 5043 5124 -1022 2028 107 34 21 chr1 35147593 35147884 -247045780 + AluJo SINE Alu 1 295 -17 266 229 181 4 chr1 35147947 35148056 -247045608 - MIR SINE MIR -85 123 35 2394 98 0 9 chr1 35148071 35148250 -247045414 - AluSx SINE Alu 0 312 136 2306 102 7 0 chr1 35148250 35148553 -247045111 - AluSp SINE Alu -8 305 1 2394 98 0 9 chr1 35148553 35148688 -247044976 - AluSx SINE Alu -176 136 1 2165 114 0 17 chr1 35149986 35150283 -247043381 - AluSx SINE Alu -20 292 1 220 268 49 0 chr1 35151736 35151818 -247041846 - MIR3 SINE MIR -29 179 94 16048 143 27 68 chr1 35155256 35158621 -247035043 - L1P LINE L1 -2330 3816 591 1829 217 6 6 chr1 35158629 35158988 -247034676 - MLT2D LTR ERVL -55 359 1 2456 87 0 0 chr1 35159238 35159537 -247034127 - AluSg SINE Alu -11 299 1 295 238 89 10 chr1 35159724 35159825 -247033839 - MIR SINE MIR -62 146 38 1298 151 86 62 chr1 35159918 35160209 -247033455 - AluSx SINE Alu -14 298 1 2514 49 3 0 chr1 35160214 35160499 -247033165 - AluSx SINE Alu -26 286 1 431 297 66 19 chr1 35160736 35160948 -247032716 - HAL1b LINE L1 -561 787 566 226 302 81 0 chr1 35161169 35161255 -247032409 + MLT1I LTR MaLR 42 134 -275 6521 208 41 16 chr1 35161493 35162319 -247031345 + L1 LINE L1 3495 4299 -1847 2400 89 0 0 chr1 35162319 35162610 -247031054 - AluSc SINE Alu -18 291 1 6521 208 41 16 chr1 35162610 35162680 -247030984 + L1 LINE L1 4299 4366 -1780 246 81 0 0 chr1 35162680 35162717 -247030947 + (CA)n Simple_repeat Simple_repeat 1 37 0 6521 208 41 16 chr1 35162717 35163423 -247030241 + L1 LINE L1 4366 5138 -1008 338 324 22 15 chr1 35163876 35164012 -247029652 - MIR SINE MIR -120 142 6 1130 198 89 77 chr1 35164460 35164900 -247028764 - LTR56 LTR ERV1 0 445 1 215 323 31 0 chr1 35164997 35165062 -247028602 - MIR SINE MIR -111 97 31 451 221 130 8 chr1 35165392 35165523 -247028141 - MER69 DNA AcHobo 0 2526 2380 296 261 0 29 chr1 35165650 35165719 -247027945 - MER69 DNA AcHobo -1159 67 1 272 326 17 45 chr1 35166009 35166187 -247027477 + L2 LINE L2 2588 2760 -554 698 129 0 0 chr1 35166288 35166389 -247027275 - LTR12 LTR ERV1 -133 581 481 400 227 17 0 chr1 35166390 35166509 -247027155 - LTR30 LTR ERV1 -79 677 544 283 143 0 86 chr1 35167026 35167070 -247026594 - MLT2C2 LTR ERVL 0 464 427 336 24 0 0 chr1 35167070 35167111 -247026553 + (TG)n Simple_repeat Simple_repeat 1 41 0 283 143 0 86 chr1 35167111 35167136 -247026528 - MLT2C2 LTR ERVL -37 427 401 6896 65 5 2 chr1 35167145 35168523 -247025141 - L1PA7 LINE L1 -4 6150 4773 616 214 36 91 chr1 35168526 35168857 -247024807 + L1M4 LINE L1 4140 4452 -1694 407 106 234 0 chr1 35168962 35169056 -247024608 - MSTA LTR MaLR -199 229 114 250 214 0 0 chr1 35169102 35169158 -247024506 - L1ME LINE L1 -684 5437 5382 682 110 31 1 chr1 35169168 35169278 -247024386 - MSTA LTR MaLR -313 113 1 9536 173 19 5 chr1 35169284 35170907 -247022757 - MSTA-int LTR MaLR -6 1645 1 2336 144 65 5 chr1 35170909 35171311 -247022353 - MSTA LTR MaLR -2 426 1 265 298 106 0 chr1 35171933 35172084 -247021580 + MIR3 SINE MIR 22 188 -20 2601 174 43 6 chr1 35173294 35173760 -247019904 - MER52A LTR ERV1 0 1755 1273 10110 38 2 1 chr1 35173869 35175873 -247017791 + L1PA4 LINE L1 4149 6154 -1 361 221 183 10 chr1 35175912 35176016 -247017648 + MSTA LTR MaLR 1 122 -306 1603 116 46 0 chr1 35176116 35176357 -247017307 + AluSx SINE Alu 59 310 -2 205 224 102 31 chr1 35176978 35177076 -247016588 - MIR SINE MIR -69 193 89 662 254 37 26 chr1 35177411 35177600 -247016064 + MLT1L LTR MaLR 103 293 -322 253 208 0 0 chr1 35177704 35177757 -247015907 - MIR SINE MIR 0 262 210 5087 165 188 123 chr1 35177760 35177929 -247015735 - Tigger1 DNA MER2_type -1 2417 2260 207 0 0 0 chr1 35177929 35177952 -247015712 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 5087 165 188 123 chr1 35177952 35177969 -247015695 - Tigger1 DNA MER2_type -158 2260 2246 2094 97 0 15 chr1 35177969 35178238 -247015426 - AluSg SINE Alu -45 265 1 5087 165 188 123 chr1 35178238 35178553 -247015111 - Tigger1 DNA MER2_type -172 2246 1953 1835 156 10 10 chr1 35178553 35178841 -247014823 + AluJo SINE Alu 2 289 -23 5087 165 188 123 chr1 35178841 35178867 -247014797 - Tigger1 DNA MER2_type -465 1953 1930 246 62 0 0 chr1 35178867 35178899 -247014765 + (TATG)n Simple_repeat Simple_repeat 4 35 0 1762 148 53 7 chr1 35178899 35179182 -247014482 - AluJb SINE Alu -16 296 1 5087 165 188 123 chr1 35179182 35179602 -247014062 - Tigger1 DNA MER2_type -488 1930 1538 2165 113 3 3 chr1 35179602 35179895 -247013769 + AluSq SINE Alu 1 293 -20 198 0 0 0 chr1 35179895 35179917 -247013747 + (TA)n Simple_repeat Simple_repeat 2 23 0 5087 165 188 123 chr1 35179917 35180296 -247013368 - Tigger1 DNA MER2_type -880 1538 1185 2035 132 3 0 chr1 35180296 35180583 -247013081 - AluSx SINE Alu -24 288 1 2359 69 0 14 chr1 35180587 35180878 -247012786 - AluY SINE Alu -20 291 5 1424 209 21 3 chr1 35180881 35181168 -247012496 - AluJo SINE Alu -20 292 1 5087 165 188 123 chr1 35181168 35181198 -247012466 - Tigger1 DNA MER2_type -1236 1182 1155 2196 111 7 0 chr1 35181198 35181487 -247012177 - AluSx SINE Alu -21 291 1 5087 165 188 123 chr1 35181487 35181617 -247012047 - Tigger1 DNA MER2_type -1263 1155 1035 862 71 143 0 chr1 35181617 35181743 -247011921 - AluY SINE Alu 0 311 168 5087 165 188 123 chr1 35181743 35181820 -247011844 - Tigger1 DNA MER2_type -1383 1035 964 2058 119 42 0 chr1 35181820 35182106 -247011558 + AluSp SINE Alu 1 298 -15 5087 165 188 123 chr1 35182106 35182608 -247011056 - Tigger1 DNA MER2_type -1454 964 66 2444 81 0 3 chr1 35182608 35182915 -247010749 - AluSg SINE Alu -4 306 1 21 0 0 0 chr1 35182922 35182943 -247010721 + AT_rich Low_complexity Low_complexity 1 21 0 770 178 0 0 chr1 35182951 35183080 -247010584 + FLAM_C SINE Alu 1 129 -4 245 282 24 12 chr1 35183165 35183250 -247010414 - MIR SINE MIR -115 147 62 2327 91 3 10 chr1 35183360 35183667 -247009997 - AluSp SINE Alu -8 305 1 325 185 0 0 chr1 35183781 35183846 -247009818 - Alu SINE Alu -1 301 237 511 234 105 12 chr1 35183890 35183956 -247009708 + MIR SINE MIR 74 132 -130 1739 181 13 10 chr1 35183956 35184260 -247009404 + AluJo SINE Alu 1 305 -7 511 234 105 12 chr1 35184260 35184364 -247009300 + MIR SINE MIR 132 260 -2 234 87 0 0 chr1 35184429 35184475 -247009189 + LTR66 LTR ERVL 394 439 -171 2316 97 3 0 chr1 35184476 35184774 -247008890 - AluSx SINE Alu -13 299 1 496 216 8 64 chr1 35184895 35185020 -247008644 - L2 LINE L2 -9 3304 3187 462 239 124 104 chr1 35185028 35185187 -247008477 - Charlie8 DNA MER1_type -53 288 121 2254 99 24 0 chr1 35185187 35185479 -247008185 - AluSg SINE Alu -11 299 1 462 239 124 104 chr1 35185479 35185578 -247008086 - Charlie8 DNA MER1_type -220 121 25 36 44 0 15 chr1 35185654 35185691 -247007973 + AT_rich Low_complexity Low_complexity 1 38 -29 2179 113 0 10 chr1 35185691 35185991 -247007673 - AluSx SINE Alu -15 297 1 36 44 0 15 chr1 35185991 35186021 -247007643 + AT_rich Low_complexity Low_complexity 38 67 0 1992 93 0 15 chr1 35186021 35186290 -247007374 - AluSx SINE Alu -23 289 25 1984 129 23 26 chr1 35186312 35186615 -247007049 - AluSx SINE Alu -10 302 1 361 297 116 51 chr1 35186823 35187134 -247006530 - L2 LINE L2 -954 2360 2071 2220 110 0 0 chr1 35187134 35187426 -247006238 + AluSx SINE Alu 1 292 -20 2385 92 0 13 chr1 35187435 35187751 -247005913 + AluSq SINE Alu 1 312 -1 361 297 116 51 chr1 35187751 35187946 -247005718 - L2 LINE L2 -1250 2064 1803 732 159 0 38 chr1 35187946 35188078 -247005586 + FLAM_C SINE Alu 1 127 -6 361 297 116 51 chr1 35188078 35188112 -247005552 - L2 LINE L2 -1511 1803 1773 2349 102 0 3 chr1 35188117 35188420 -247005244 + AluSp SINE Alu 1 302 -11 401 310 8 70 chr1 35188424 35188666 -247004998 - L2 LINE L2 -662 2652 2426 756 183 86 20 chr1 35188704 35188901 -247004763 - MER106B DNA MER1_type -2 1057 848 2003 157 3 0 chr1 35188902 35189202 -247004462 + AluJb SINE Alu 1 301 -11 2411 82 0 0 chr1 35189208 35189499 -247004165 + AluSc SINE Alu 12 302 -7 1522 174 19 0 chr1 35189570 35189829 -247003835 + AluJb SINE Alu 33 296 -16 855 123 0 0 chr1 35189837 35189951 -247003713 + AluJo/FLAM SINE Alu 1 114 -198 2051 127 3 3 chr1 35189951 35190250 -247003414 - AluSx SINE Alu -13 299 1 2071 127 3 3 chr1 35190289 35190588 -247003076 - AluSx SINE Alu -13 299 1 826 125 153 23 chr1 35190590 35190806 -247002858 - MER106B DNA MER1_type -262 797 554 1699 172 150 14 chr1 35190811 35191165 -247002499 - MER106B DNA MER1_type -657 402 1 897 191 39 121 chr1 35191165 35191469 -247002195 - MER46C DNA MER2_type -13 325 52 793 169 0 22 chr1 35191469 35191629 -247002035 - FLAM_C SINE Alu 0 133 1 897 191 39 121 chr1 35191629 35191676 -247001988 - MER46C DNA MER2_type -286 52 3 2242 107 3 3 chr1 35191827 35192125 -247001539 - AluSq SINE Alu -12 301 4 216 322 161 8 chr1 35192584 35192702 -247000962 - MIR SINE MIR -57 151 16 186 43 0 0 chr1 35193412 35193435 -247000229 + (CA)n Simple_repeat Simple_repeat 2 24 0 511 130 20 0 chr1 35193800 35193900 -246999764 + (TA)n Simple_repeat Simple_repeat 2 103 0 251 125 42 0 chr1 35194552 35194600 -246999064 + CT-rich Low_complexity Low_complexity 3 52 0 1447 139 24 32 chr1 35194600 35194851 -246998813 - AluJb SINE Alu -5 307 59 1412 127 0 42 chr1 35194984 35195220 -246998444 - AluJo SINE Alu 0 312 87 213 179 239 0 chr1 35195427 35195494 -246998170 + MIR SINE MIR 65 147 -115 216 0 0 0 chr1 35195666 35195690 -246997974 + (T)n Simple_repeat Simple_repeat 1 24 0 1898 128 84 0 chr1 35195947 35196221 -246997443 + AluSx SINE Alu 1 297 -15 789 191 11 49 chr1 35196306 35196455 -246997209 + L1M4 LINE L1 4907 5046 -1100 2255 102 3 0 chr1 35196455 35196749 -246996915 + AluSq SINE Alu 1 295 -18 789 191 11 49 chr1 35196749 35196810 -246996854 + L1M4 LINE L1 5046 5108 -1038 929 118 0 0 chr1 35196810 35196929 -246996735 + FLAM_C SINE Alu 1 119 -24 27 49 0 0 chr1 35196929 35196970 -246996694 + AT_rich Low_complexity Low_complexity 1 41 0 371 217 9 0 chr1 35196994 35197100 -246996564 + (TA)n Simple_repeat Simple_repeat 1 107 0 195 129 0 0 chr1 35197128 35197159 -246996505 + (TATATG)n Simple_repeat Simple_repeat 2 32 0 414 234 0 3 chr1 35197160 35197249 -246996415 + AluJ/FLAM SINE Alu 1 68 -234 332 179 119 0 chr1 35197283 35197350 -246996314 - tRNA-Asp-GAC tRNA tRNA 0 75 1 2178 117 0 0 chr1 35197377 35197714 -246995950 - AluSx SINE Alu 0 337 1 1623 154 46 0 chr1 35197740 35198020 -246995644 - AluJb SINE Alu 0 302 11 2501 52 0 0 chr1 35198065 35198356 -246995308 + AluY SINE Alu 1 291 -20 680 170 0 0 chr1 35198365 35198477 -246995187 - FLAM_C SINE Alu -30 113 2 2110 143 0 0 chr1 35198505 35198799 -246994865 + AluJb SINE Alu 1 294 -18 717 139 10 178 chr1 35198802 35198842 -246994822 + L1M4c LINE L1 1551 1596 -4788 1441 199 26 36 chr1 35198842 35199149 -246994515 + AluJo SINE Alu 1 304 -8 717 139 10 178 chr1 35199149 35199206 -246994458 + L1M4c LINE L1 1596 1661 -4723 1478 106 5 0 chr1 35199206 35199404 -246994260 + AluSq SINE Alu 5 203 -110 2032 96 16 61 chr1 35199404 35199716 -246993948 + AluSx SINE Alu 1 298 -14 717 139 10 178 chr1 35199716 35199811 -246993853 + L1M4c LINE L1 1660 1711 -4673 1874 154 14 0 chr1 35199811 35200097 -246993567 + AluJb SINE Alu 9 298 -14 717 139 10 178 chr1 35200097 35200109 -246993555 + L1M4c LINE L1 1711 1723 -4661 * 1119 173 36 9 chr1 35200099 35200324 -246993340 + L1MB7 LINE L1 5809 6039 -145 2037 146 0 37 chr1 35200338 35200529 -246993135 - AluSx SINE Alu -1 311 135 2137 107 4 0 chr1 35200529 35200810 -246992854 - AluSp SINE Alu -31 282 1 2037 146 0 37 chr1 35200810 35200941 -246992723 - AluSx SINE Alu -177 135 1 289 143 0 0 chr1 35200942 35200991 -246992673 - FLAM_A SINE Alu 0 133 85 1103 241 0 0 chr1 35200991 35201211 -246992453 - AluJo SINE Alu -92 220 1 626 180 40 40 chr1 35201218 35201368 -246992296 + L1MB8 LINE L1 6024 6173 -5 236 264 90 112 chr1 35201486 35201618 -246992046 + Charlie8 DNA MER1_type 1 130 -211 2067 112 21 11 chr1 35201618 35201904 -246991760 - AluSq SINE Alu -11 302 14 236 264 90 112 chr1 35201904 35201949 -246991715 + Charlie8 DNA MER1_type 130 174 -167 223 328 114 30 chr1 35201975 35202176 -246991488 + L3 LINE CR1 1351 1568 -9 1738 173 17 3 chr1 35202621 35202916 -246990748 - AluJb SINE Alu -13 299 1 2272 108 3 0 chr1 35203296 35203593 -246990071 + AluSq SINE Alu 1 298 -15 2532 62 7 0 chr1 35203706 35204010 -246989654 + AluSp SINE Alu 1 306 -7 344 319 92 26 chr1 35204063 35204292 -246989372 - L2 LINE L2 -1158 2156 1913 205 253 4 0 chr1 35204759 35204842 -246988822 - L2 LINE L2 -309 3004 2921 487 217 123 66 chr1 35204950 35205406 -246988258 + L1MC5 LINE L1 7311 7940 -21 253 230 112 81 chr1 35205392 35205558 -246988106 + L1MC4 LINE L1 7533 7692 -350 * 2302 90 0 3 chr1 35205558 35205848 -246987816 + AluSg SINE Alu 13 301 -9 253 230 112 81 chr1 35205848 35206027 -246987637 + L1MC4 LINE L1 7692 7998 -44 2410 106 3 0 chr1 35206829 35207140 -246986524 - AluSx SINE Alu 0 312 1 488 233 15 41 chr1 35207175 35207312 -246986352 - LOR1-int LTR ERV1 -2429 4169 3835 1778 160 91 36 chr1 35207312 35207430 -246986234 - MLT1B LTR MaLR 0 390 280 2105 102 41 3 chr1 35207430 35207725 -246985939 + AluSg SINE Alu 1 306 -4 1778 160 91 36 chr1 35207725 35207969 -246985695 - MLT1B LTR MaLR -110 280 8 1559 141 0 12 chr1 35208554 35208796 -246984868 - AluJb SINE Alu -60 252 14 1481 126 56 0 chr1 35208830 35209045 -246984619 + AluSg/x SINE Alu 85 311 -1 1669 164 122 3 chr1 35209045 35209398 -246984266 - L1MB4 LINE L1 -4 6412 6018 2688 165 101 4 chr1 35209399 35209895 -246983769 - MER44D DNA MER2_type 0 605 7 819 212 104 0 chr1 35209901 35210094 -246983570 - L1MB4 LINE L1 -534 5876 5664 1925 149 17 0 chr1 35210100 35210389 -246983275 - AluSx SINE Alu -18 294 1 2378 85 0 23 chr1 35210395 35210702 -246982962 - AluY SINE Alu -11 300 1 2162 130 3 0 chr1 35210768 35211068 -246982596 - AluSx SINE Alu -11 301 1 854 231 0 20 chr1 35211123 35211318 -246982346 - L1MB4 LINE L1 -1251 5131 4941 * 1406 231 74 45 chr1 35211317 35211868 -246981796 - L1MB4 LINE L1 -3264 3118 2552 2586 142 164 92 chr1 35211868 35212298 -246981366 - L1MB4 LINE L1 -4143 2241 1844 1782 132 36 11 chr1 35212298 35212578 -246981086 - AluJb SINE Alu -5 307 21 2586 142 164 92 chr1 35212578 35212730 -246980934 - L1MB4 LINE L1 -4540 1844 1704 1509 192 7 21 chr1 35212730 35213041 -246980623 - AluJo SINE Alu 0 307 1 2586 142 164 92 chr1 35213041 35213091 -246980573 - L1MB4 LINE L1 -4680 1704 1659 1996 154 0 19 chr1 35213091 35213409 -246980255 - AluJb SINE Alu 0 312 1 2586 142 164 92 chr1 35213409 35213548 -246980116 - L1MB4 LINE L1 -4725 1659 1411 1117 166 17 0 chr1 35213549 35213730 -246979934 - AluSg/x SINE Alu -13 297 114 748 117 0 33 chr1 35213730 35213850 -246979814 - AluSx SINE Alu -159 153 38 1849 211 28 61 chr1 35213857 35214001 -246979663 - L1MB4 LINE L1 -4986 1398 1251 2336 74 30 7 chr1 35214001 35214300 -246979364 - AluSg SINE Alu -4 306 1 725 133 16 31 chr1 35214307 35214435 -246979229 - FLAM_C SINE Alu -7 126 1 1849 211 28 61 chr1 35214435 35214827 -246978837 - L1MB4 LINE L1 -5139 1245 872 682 193 0 43 chr1 35214829 35214969 -246978695 - AluJo SINE Alu -178 134 1 865 255 104 73 chr1 35215038 35215562 -246978102 - L1MEc LINE L1 -4538 1858 1309 2298 112 0 6 chr1 35215562 35215876 -246977788 - AluSx SINE Alu 0 312 1 865 255 104 73 chr1 35215876 35215998 -246977666 - L1MEc LINE L1 -5087 1309 1192 271 198 62 73 chr1 35215971 35216067 -246977597 - L1MEc LINE L1 -5486 910 816 * 2294 96 0 3 chr1 35216068 35216369 -246977295 - AluSc SINE Alu -9 300 1 906 168 0 42 chr1 35216370 35216537 -246977127 - FRAM SINE Alu -17 159 1 631 288 114 38 chr1 35216545 35217183 -246976481 - L1MEc LINE L1 -5579 817 131 254 237 171 83 chr1 35217232 35217495 -246976169 + L1M4 LINE L1 2319 2624 -3522 1649 177 17 10 chr1 35217495 35217795 -246975869 + AluJo SINE Alu 5 306 -6 254 237 171 83 chr1 35217795 35217894 -246975770 + L1M4 LINE L1 2624 2713 -3433 2526 74 0 0 chr1 35218007 35218316 -246975348 + AluY SINE Alu 1 309 -2 1217 84 36 6 chr1 35218316 35218482 -246975182 + AluSg/x SINE Alu 134 304 -8 2428 92 0 16 chr1 35218727 35219043 -246974621 + AluSq SINE Alu 1 311 -2 279 256 64 10 chr1 35219049 35219191 -246974473 + L1ME LINE L1 5328 5474 -690 2287 112 0 0 chr1 35219308 35219602 -246974062 + AluSx SINE Alu 1 294 -18 250 167 0 0 chr1 35219602 35219638 -246974026 + Charlie1 DNA MER1_type 1 36 -2725 526 270 7 27 chr1 35219667 35219815 -246973849 - MIR SINE MIR -114 148 4 2413 91 3 10 chr1 35220273 35220582 -246973082 + AluSq SINE Alu 5 311 -2 2244 109 0 34 chr1 35220754 35221074 -246972590 - AluSg SINE Alu -1 309 1 1695 122 3 99 chr1 35221147 35221500 -246972164 - AluJb SINE Alu 0 323 1 561 184 0 0 chr1 35221540 35221638 -246972026 - AluSg/x SINE Alu -6 304 207 2318 171 75 12 chr1 35221670 35222166 -246971498 - Tigger7 DNA MER2_type 0 2487 1 462 305 71 13 chr1 35222914 35223338 -246970326 + L2 LINE L2 2800 3312 -1 2085 98 17 3 chr1 35223837 35224134 -246969530 - L1MA1 LINE L1 0 6302 6002 244 196 0 0 chr1 35224354 35224400 -246969264 + MIR SINE MIR 76 121 -141 362 265 43 43 chr1 35224450 35224612 -246969052 - MIR3 SINE MIR -25 183 22 449 202 45 0 chr1 35225011 35225100 -246968564 + MER21B LTR ERV1 1 93 -770 625 236 135 0 chr1 35225100 35225278 -246968386 + MER21B LTR ERV1 591 792 -71 2430 82 0 10 chr1 35225461 35225764 -246967900 + AluSg SINE Alu 2 301 -9 1835 129 42 21 chr1 35226318 35226605 -246967059 + AluJb SINE Alu 1 293 -19 2429 95 0 0 chr1 35227998 35228294 -246965370 + AluSg SINE Alu 1 296 -14 * 2564 35 0 0 chr1 35228292 35228574 -246965090 + AluY SINE Alu 27 308 -3 4398 155 63 32 chr1 35229363 35230341 -246963323 - L1MB3 LINE L1 -15 6168 5153 1725 162 0 46 chr1 35230347 35230649 -246963015 - AluJb SINE Alu -22 290 3 708 160 30 15 chr1 35230661 35230792 -246962872 - FLAM_A SINE Alu 0 133 1 1789 150 3 46 chr1 35230850 35231156 -246962508 + AluJb SINE Alu 1 293 -19 2317 113 0 0 chr1 35231159 35231470 -246962194 + AluSx SINE Alu 1 311 -1 2501 80 0 0 chr1 35231788 35232087 -246961577 + AluSg SINE Alu 1 299 -11 2208 76 7 31 chr1 35232091 35232406 -246961258 + AluY SINE Alu 1 308 0 1274 161 66 0 chr1 35233114 35233325 -246960339 + AluJb SINE Alu 86 310 -2 1582 201 10 17 chr1 35233332 35233621 -246960043 + AluJo SINE Alu 6 292 -20 1650 107 5 5 chr1 35233707 35233923 -246959741 - AluSx SINE Alu -86 226 11 2028 116 21 14 chr1 35234536 35234821 -246958843 + AluJo SINE Alu 9 295 -17 2457 77 0 43 chr1 35234878 35235203 -246958461 - AluY SINE Alu 0 311 1 22 0 0 0 chr1 35235212 35235234 -246958430 + AT_rich Low_complexity Low_complexity 1 22 0 215 246 46 15 chr1 35235874 35235939 -246957725 - MIR SINE MIR -90 118 52 189 121 0 0 chr1 35236666 35236699 -246956965 + (T)n Simple_repeat Simple_repeat 1 33 0 195 42 0 0 chr1 35237418 35237442 -246956222 + (TTC)n Simple_repeat Simple_repeat 1 24 0 189 0 0 0 chr1 35238617 35238638 -246955026 + (A)n Simple_repeat Simple_repeat 1 21 0 2475 73 3 3 chr1 35240946 35241248 -246952416 + AluSg SINE Alu 1 302 -8 1877 127 34 31 chr1 35241259 35241550 -246952114 + AluSx SINE Alu 1 292 -20 504 253 80 38 chr1 35242146 35242383 -246951281 - L1ME1 LINE L1 -5 6161 5915 2369 88 10 7 chr1 35242428 35242724 -246950940 - AluSq SINE Alu -16 297 1 285 292 94 0 chr1 35242785 35242881 -246950783 + Charlie8 DNA MER1_type 1 105 -2312 1664 186 14 3 chr1 35242943 35243233 -246950431 + AluJo SINE Alu 1 293 -19 593 158 175 0 chr1 35243671 35243785 -246949879 - MER46A DNA MER2_type -1 235 102 594 244 120 19 chr1 35244437 35244646 -246949018 + MIR SINE MIR 33 262 0 361 295 49 8 chr1 35244651 35244773 -246948891 - MIR SINE MIR -62 146 20 371 299 52 15 chr1 35247265 35247399 -246946265 + MIR3 SINE MIR 20 158 -50 414 275 106 73 chr1 35247483 35247701 -246945963 - Charlie8 DNA MER1_type -2190 227 3 2369 93 3 3 chr1 35247822 35248123 -246945541 + AluSq SINE Alu 1 301 -12 2203 129 0 3 chr1 35248229 35248531 -246945133 + AluSg SINE Alu 1 301 -9 2274 81 0 3 chr1 35248584 35248867 -246944797 - AluY SINE Alu -29 282 1 2485 62 3 13 chr1 35248867 35249173 -246944491 - AluY SINE Alu -8 303 1 2275 85 13 19 chr1 35249173 35249480 -246944184 - AluSc SINE Alu -4 305 1 213 368 21 0 chr1 35249732 35249827 -246943837 - L2 LINE L2 -2 3270 3174 252 243 155 34 chr1 35250496 35250644 -246943020 - L1MC5 LINE L1 -520 7441 7276 309 82 0 0 chr1 35250800 35250849 -246942815 + (TATG)n Simple_repeat Simple_repeat 2 50 0 2288 65 0 27 chr1 35250849 35251143 -246942521 - AluY SINE Alu -25 286 1 2259 108 0 3 chr1 35251145 35251441 -246942223 - AluSc SINE Alu -14 295 1 252 215 46 0 chr1 35251506 35251571 -246942093 + MIR SINE MIR 124 191 -71 626 282 342 6 chr1 35251599 35252240 -246941424 - L2 LINE L2 -1655 1659 804 1130 184 92 3 chr1 35252242 35252371 -246941293 + MER33 DNA MER1_type 1 117 -2468 1698 98 84 29 chr1 35252371 35252645 -246941019 - AluSx SINE Alu -23 289 1 1130 184 92 3 chr1 35252645 35252808 -246940856 + MER33 DNA MER1_type 117 319 -5 500 313 48 15 chr1 35252812 35253084 -246940580 - L2 LINE L2 -2510 804 524 305 111 123 0 chr1 35253714 35253795 -246939869 - Charlie5 DNA MER1_type -106 2506 2416 2057 149 3 0 chr1 35253800 35254096 -246939568 + AluSx SINE Alu 1 297 -15 329 202 219 44 chr1 35254404 35254518 -246939146 - L1ME4a LINE L1 -148 5973 5840 527 306 72 29 chr1 35254536 35254843 -246938821 - L1ME4a LINE L1 -2014 5794 5475 2248 101 7 23 chr1 35254974 35255281 -246938383 - AluSg SINE Alu -5 305 4 654 266 192 11 chr1 35255892 35256178 -246937486 - MER46C DNA MER2_type 0 338 1 2444 96 0 3 chr1 35256254 35256557 -246937107 + AluSx SINE Alu 1 302 -10 2127 103 3 73 chr1 35258940 35259300 -246934364 - AluSx SINE Alu 0 312 1 194 324 29 0 chr1 35259686 35259754 -246933910 - MIR SINE MIR -173 89 20 210 318 106 8 chr1 35260001 35260133 -246933531 - MIR SINE MIR -48 214 70 348 111 0 0 chr1 35261399 35261453 -246932211 + (T)n Simple_repeat Simple_repeat 1 54 0 260 198 128 23 chr1 35265598 35265684 -246927980 + MIR SINE MIR 132 226 -36 202 146 24 0 chr1 35265769 35265810 -246927854 + CT-rich Low_complexity Low_complexity 1 42 0 2100 137 10 0 chr1 35268296 35268589 -246925075 + AluSx SINE Alu 1 296 -16 23 0 0 0 chr1 35268589 35268612 -246925052 + AT_rich Low_complexity Low_complexity 1 23 0 2074 126 3 3 chr1 35268618 35268919 -246924745 + AluSx SINE Alu 1 301 -11 247 343 30 0 chr1 35268994 35269093 -246924571 - MIR SINE MIR -84 124 23 247 268 49 0 chr1 35272225 35272307 -246921357 + MIR3 SINE MIR 94 179 -29 2196 114 0 17 chr1 35273760 35274057 -246919607 + AluSx SINE Alu 1 292 -20 2425 98 0 9 chr1 35275354 35275489 -246918175 + AluSx SINE Alu 1 136 -176 2339 102 7 0 chr1 35275489 35275792 -246917872 + AluSp SINE Alu 1 305 -8 2425 98 0 9 chr1 35275792 35275971 -246917693 + AluSx SINE Alu 136 312 0 272 221 214 2 chr1 35275986 35276095 -246917569 + MIR SINE MIR 35 167 -85 2062 107 34 21 chr1 35276158 35276449 -246917215 - AluJo SINE Alu -17 295 1 2333 89 0 23 chr1 35278336 35278639 -246915025 - AluSg SINE Alu -14 296 1 636 127 9 27 chr1 35278642 35278752 -246914912 - AluJo/FLAM SINE Alu -181 131 24 2282 81 13 45 chr1 35278780 35278947 -246914717 - AluSp SINE Alu -13 300 146 2628 56 0 7 chr1 35278947 35279253 -246914411 - AluY SINE Alu -7 304 1 2282 81 13 45 chr1 35279253 35279395 -246914269 - AluSp SINE Alu -167 146 1 294 261 28 103 chr1 35279396 35279475 -246914189 - MIR SINE MIR -62 146 111 2278 111 0 10 chr1 35279475 35279781 -246913883 + AluSx SINE Alu 5 307 -5 294 261 28 103 chr1 35279781 35279855 -246913809 - MIR SINE MIR -97 111 33 192 169 153 0 chr1 35282154 35282213 -246911451 - MIR SINE MIR -93 169 102 302 283 262 5 chr1 35283146 35283337 -246910327 - MIR SINE MIR -4 258 19 2463 76 0 10 chr1 35283584 35283886 -246909778 + AluSq SINE Alu 1 299 -14 361 66 82 0 chr1 35283900 35283961 -246909703 + L1MB1 LINE L1 6111 6176 -13 2270 102 0 10 chr1 35283964 35284099 -246909565 + AluSp SINE Alu 1 136 -177 2401 108 0 0 chr1 35284099 35284406 -246909258 + AluSx SINE Alu 1 307 -5 2270 102 0 10 chr1 35284406 35284573 -246909091 + AluSp SINE Alu 136 300 -13 1640 172 69 0 chr1 35284825 35285116 -246908548 - AluJb SINE Alu -1 311 1 288 300 138 19 chr1 35285259 35285419 -246908245 + MIR SINE MIR 84 262 0 2273 118 0 7 chr1 35285614 35285920 -246907744 - AluSx SINE Alu -8 304 1 362 256 231 19 chr1 35286137 35286297 -246907367 - MIR SINE MIR -16 246 53 217 333 74 7 chr1 35286834 35286969 -246906695 + L2 LINE L2 2972 3115 -157 690 286 75 4 chr1 35287040 35287267 -246906397 - MIR SINE MIR 0 262 20 1468 128 86 4 chr1 35288258 35288492 -246905172 + AluJo SINE Alu 1 253 -59 2444 83 0 3 chr1 35288726 35289028 -246904636 - AluSx SINE Alu -11 301 1 459 271 33 8 chr1 35289032 35289154 -246904510 - MIR SINE MIR -65 143 19 2234 106 6 34 chr1 35290104 35290282 -246903382 - AluSx SINE Alu 0 312 145 2349 102 0 7 chr1 35290282 35290577 -246903087 - AluSx SINE Alu -19 293 1 2234 106 6 34 chr1 35290577 35290719 -246902945 - AluSx SINE Alu -167 145 1 234 283 91 10 chr1 35290728 35290827 -246902837 - L2 LINE L2 -32 3240 3134 2035 107 50 0 chr1 35290904 35291184 -246902480 + AluSq SINE Alu 1 294 -19 2552 50 10 7 chr1 35291184 35291487 -246902177 + AluY SINE Alu 1 304 -7 1857 105 0 12 chr1 35292011 35292259 -246901405 - AluSx SINE Alu -13 299 55 1987 97 0 26 chr1 35292269 35292537 -246901127 - AluSx SINE Alu -5 307 47 1067 133 19 0 chr1 35292585 35292743 -246900921 + FRAM SINE Alu 11 171 -5 345 270 40 66 chr1 35292776 35292928 -246900736 + MIR SINE MIR 51 198 -64 1821 168 10 7 chr1 35292937 35293228 -246900436 + AluJo SINE Alu 1 292 -20 285 332 189 29 chr1 35293275 35293555 -246900109 - L2 LINE L2 -31 3241 2917 2193 72 55 14 chr1 35294700 35294991 -246898673 - AluY SINE Alu -8 303 1 2308 116 0 0 chr1 35294991 35295294 -246898370 - AluSx SINE Alu -9 303 1 417 248 38 45 chr1 35295302 35295459 -246898205 + MIR SINE MIR 107 262 0 872 120 0 0 chr1 35295513 35295630 -246898034 - FLAM_C SINE Alu -26 117 1 1013 164 38 6 chr1 35295674 35295857 -246897807 - AluJb SINE Alu -2 310 122 761 194 6 0 chr1 35296038 35296203 -246897461 + CT-rich Low_complexity Low_complexity 3 168 0 395 315 61 20 chr1 35296290 35296487 -246897177 - L3 LINE CR1 -11 1566 1362 1075 91 0 0 chr1 35296826 35296958 -246896706 + AluSq/x SINE Alu 1 132 -180 2285 104 7 0 chr1 35296961 35297260 -246896404 + AluSp SINE Alu 1 301 -12 2268 73 0 0 chr1 35297260 35297532 -246896132 + AluY SINE Alu 1 272 -39 42 36 0 0 chr1 35297532 35297588 -246896076 + AT_rich Low_complexity Low_complexity 1 56 0 267 224 149 45 chr1 35297696 35297830 -246895834 + L2 LINE L2 2904 3051 -262 705 164 168 77 chr1 35297830 35298050 -246895614 - AluJo SINE Alu -9 303 64 960 138 0 0 chr1 35298053 35298191 -246895473 + AluJb SINE Alu 160 297 -15 359 109 0 0 chr1 35298200 35298255 -246895409 + HY3 scRNA scRNA 46 100 -1 278 262 117 39 chr1 35298548 35298651 -246895013 - L2 LINE L2 -3 3310 3200 2397 81 10 0 chr1 35299385 35299683 -246893981 - AluSp SINE Alu -8 305 5 815 224 6 0 chr1 35299709 35299870 -246893794 - FAM SINE Alu -13 162 1 470 263 143 0 chr1 35299903 35300036 -246893628 + MIR SINE MIR 71 222 -40 1919 162 0 29 chr1 35300039 35300354 -246893310 + AluSq SINE Alu 1 306 -7 303 117 19 39 chr1 35300354 35300457 -246893207 + (TA)n Simple_repeat Simple_repeat 2 102 0 2056 111 15 7 chr1 35300534 35300832 -246892832 + AluSx SINE Alu 9 308 0 2287 116 3 0 chr1 35301396 35301697 -246891967 - AluSg SINE Alu -6 304 3 2019 137 0 7 chr1 35301845 35302184 -246891480 - AluSg SINE Alu 0 337 1 348 316 94 16 chr1 35302189 35302445 -246891219 + Charlie8 DNA MER1_type 57 204 -2213 2264 108 0 23 chr1 35302619 35302925 -246890739 - AluSg SINE Alu -11 299 1 1205 166 0 20 chr1 35303218 35303417 -246890247 - AluJb SINE Alu 0 312 118 1771 157 12 49 chr1 35303424 35303748 -246889916 - AluJb SINE Alu 0 312 1 261 154 19 19 chr1 35303752 35303804 -246889860 - MIR SINE MIR -61 147 96 2357 97 7 3 chr1 35303955 35304264 -246889400 + AluSg SINE Alu 1 310 0 456 178 164 34 chr1 35305920 35306066 -246887598 - MER117 DNA MER1_type -8 189 25 1975 128 55 0 chr1 35306068 35306358 -246887306 + AluSx SINE Alu 1 306 -6 2250 117 7 0 chr1 35306722 35307020 -246886644 + AluSp SINE Alu 2 301 -12 267 31 0 0 chr1 35308493 35308525 -246885139 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 2066 111 3 35 chr1 35308525 35308676 -246884988 - AluSx SINE Alu -33 279 140 2133 108 0 7 chr1 35308676 35308964 -246884700 - AluSc SINE Alu -23 286 1 2066 111 3 35 chr1 35308964 35309100 -246884564 - AluSx SINE Alu -172 140 1 270 328 160 0 chr1 35309110 35309241 -246884423 - MIR SINE MIR -105 157 6 2202 114 0 23 chr1 35309526 35309833 -246883831 + AluSx SINE Alu 1 300 -12 2234 84 35 0 chr1 35310846 35311130 -246882534 - AluSc SINE Alu -15 294 1 249 312 43 0 chr1 35311363 35311456 -246882208 + L2 LINE L2 1846 1942 -1372 182 270 48 16 chr1 35311456 35311519 -246882145 + L2 LINE L2 2732 2796 -518 1957 203 118 0 chr1 35311576 35312009 -246881655 + MER44D DNA MER2_type 12 495 -210 2251 95 0 14 chr1 35312010 35312306 -246881358 - AluY SINE Alu -19 292 1 2253 84 28 3 chr1 35312315 35312602 -246881062 - AluSq SINE Alu -19 294 1 1159 175 65 104 chr1 35312603 35312911 -246880753 - AluJo SINE Alu -8 304 9 358 69 0 0 chr1 35312921 35312979 -246880685 - AluSp/q SINE Alu 0 303 246 246 302 13 31 chr1 35313155 35313314 -246880350 + (TCTCTG)n Simple_repeat Simple_repeat 3 158 0 * 398 357 11 14 chr1 35313264 35313504 -246880160 + CT-rich Low_complexity Low_complexity 1 239 0 248 352 7 14 chr1 35313528 35313673 -246879991 + CT-rich Low_complexity Low_complexity 1 144 0 185 156 0 44 chr1 35313699 35313744 -246879920 + CT-rich Low_complexity Low_complexity 2 44 0 397 261 26 9 chr1 35314907 35315022 -246878642 - MIR3 SINE MIR -38 170 54 372 337 64 0 chr1 35315122 35315294 -246878370 - MIR SINE MIR -6 256 74 2221 96 13 3 chr1 35315507 35315809 -246877855 - AluSp SINE Alu -8 305 1 374 164 14 14 chr1 35315819 35315892 -246877772 - MER20 DNA MER1_type -3 216 144 278 67 0 22 chr1 35315917 35315962 -246877702 + AluSp/q SINE Alu 254 297 -6 605 118 11 0 chr1 35315962 35316055 -246877609 - MER20 DNA MER1_type -84 135 42 259 211 19 0 chr1 35316231 35316283 -246877381 - MIR SINE MIR 0 262 210 2062 149 0 0 chr1 35316318 35316619 -246877045 + AluJb SINE Alu 1 301 -11 330 322 63 35 chr1 35316717 35316860 -246876804 + MIR3 SINE MIR 3 149 -59 2193 137 0 3 chr1 35316861 35317174 -246876490 + AluSx SINE Alu 1 312 0 222 37 0 0 chr1 35317332 35317359 -246876305 + (TA)n Simple_repeat Simple_repeat 2 28 0 2482 70 0 10 chr1 35317360 35317658 -246876006 - AluY SINE Alu -16 295 1 22 56 0 0 chr1 35317659 35317695 -246875969 + AT_rich Low_complexity Low_complexity 1 36 0 214 42 42 62 chr1 35317695 35317743 -246875921 + (TAAAAA)n Simple_repeat Simple_repeat 3 49 0 1894 110 0 0 chr1 35317747 35317992 -246875672 + AluSq SINE Alu 1 245 -68 1353 115 0 6 chr1 35317992 35318175 -246875489 - AluSg SINE Alu -128 182 1 524 244 114 28 chr1 35318430 35318531 -246875133 - Charlie8 DNA MER1_type -65 276 185 1629 148 10 77 chr1 35318531 35318842 -246874822 - AluJo SINE Alu -22 290 1 524 244 114 28 chr1 35318842 35318916 -246874748 - Charlie8 DNA MER1_type -156 185 86 309 140 0 0 chr1 35318916 35318966 -246874698 + L2 LINE L2 2666 2715 -599 1911 166 0 3 chr1 35318966 35319267 -246874397 + AluJb SINE Alu 1 300 -12 2325 59 0 4 chr1 35319269 35319542 -246874122 + AluY SINE Alu 1 272 -39 42 36 0 0 chr1 35319542 35319598 -246874066 + AT_rich Low_complexity Low_complexity 1 56 0 267 224 149 45 chr1 35319704 35319838 -246873826 + L2 LINE L2 2904 3051 -262 705 164 168 77 chr1 35319838 35320058 -246873606 - AluJo SINE Alu -9 303 64 960 138 0 0 chr1 35320061 35320199 -246873465 + AluJb SINE Alu 160 297 -15 359 109 0 0 chr1 35320208 35320263 -246873401 + HY3 scRNA scRNA 46 100 -1 278 262 117 39 chr1 35320556 35320659 -246873005 - L2 LINE L2 -3 3310 3200 2397 81 10 0 chr1 35321393 35321691 -246871973 - AluSp SINE Alu -8 305 5 815 224 6 0 chr1 35321717 35321878 -246871786 - FAM SINE Alu -13 162 1 470 263 143 0 chr1 35321911 35322044 -246871620 + MIR SINE MIR 71 222 -40 1919 162 0 29 chr1 35322047 35322362 -246871302 + AluSq SINE Alu 1 306 -7 303 117 19 39 chr1 35322362 35322465 -246871199 + (TA)n Simple_repeat Simple_repeat 2 102 0 2056 111 15 7 chr1 35322542 35322840 -246870824 + AluSx SINE Alu 9 308 0 2330 109 3 0 chr1 35323404 35323707 -246869957 - AluSg SINE Alu -6 304 1 2019 137 0 7 chr1 35323854 35324193 -246869471 - AluSg SINE Alu 0 337 1 348 316 94 16 chr1 35324198 35324454 -246869210 + Charlie8 DNA MER1_type 57 204 -2213 2264 108 0 23 chr1 35324628 35324934 -246868730 - AluSg SINE Alu -11 299 1 1205 166 0 20 chr1 35325227 35325426 -246868238 - AluJb SINE Alu 0 312 118 1771 157 12 49 chr1 35325433 35325757 -246867907 - AluJb SINE Alu 0 312 1 261 154 19 19 chr1 35325761 35325813 -246867851 - MIR SINE MIR -61 147 96 2358 97 7 3 chr1 35325964 35326300 -246867364 + AluSg SINE Alu 1 337 0 465 167 133 94 chr1 35327930 35328078 -246865586 - MER117 DNA MER1_type -8 189 31 2071 122 21 0 chr1 35328078 35328366 -246865298 + AluSx SINE Alu 1 294 -18 465 167 133 94 chr1 35328366 35328397 -246865267 - MER117 DNA MER1_type -166 31 3 2036 150 0 10 chr1 35328527 35328821 -246864843 - AluJo SINE Alu -19 293 3 543 264 104 6 chr1 35328825 35329007 -246864657 - MIR SINE MIR -38 224 25 292 246 62 54 chr1 35329054 35329184 -246864480 - MIR3 SINE MIR -69 139 9 2309 85 10 20 chr1 35329483 35329789 -246863875 - AluSg SINE Alu -7 303 1 225 301 23 0 chr1 35332072 35332169 -246861495 + MIR SINE MIR 39 138 -70 367 125 0 23 chr1 35333285 35333373 -246860291 + (CA)n Simple_repeat Simple_repeat 1 86 0 200 222 9 0 chr1 35333407 35333515 -246860149 + (CA)n Simple_repeat Simple_repeat 1 109 0 185 208 14 0 chr1 35333557 35333629 -246860035 + (CA)n Simple_repeat Simple_repeat 1 73 0 398 191 11 27 chr1 35333688 35333871 -246859793 + (CA)n Simple_repeat Simple_repeat 1 180 0 294 147 0 0 chr1 35333894 35333962 -246859702 + (CA)n Simple_repeat Simple_repeat 1 68 0 285 293 6 64 chr1 35333979 35334063 -246859601 + L2 LINE L2 2888 2975 -297 801 49 0 0 chr1 35334063 35334165 -246859499 + (TC)n Simple_repeat Simple_repeat 2 103 0 1578 169 60 0 chr1 35334165 35334432 -246859232 - AluJo SINE Alu -29 283 1 285 293 6 64 chr1 35334432 35334503 -246859161 + L2 LINE L2 2973 3035 -237 1600 117 0 0 chr1 35334511 35334716 -246858948 - AluSx SINE Alu -87 225 21 336 199 107 69 chr1 35334996 35335049 -246858615 - MIR3 SINE MIR -12 196 147 1471 211 48 3 chr1 35335049 35335343 -246858321 - AluJo SINE Alu -5 307 1 336 199 107 69 chr1 35335343 35335432 -246858232 - MIR3 SINE MIR -61 147 57 2031 159 0 7 chr1 35335435 35335736 -246857928 + AluJo SINE Alu 1 299 -13 2356 107 0 13 chr1 35335736 35336045 -246857619 + AluSc SINE Alu 1 305 -4 2375 78 0 0 chr1 35336047 35336329 -246857335 + AluSg SINE Alu 3 284 -26 1326 151 86 62 chr1 35336334 35336625 -246857039 + AluSx SINE Alu 1 298 -14 300 277 84 13 chr1 35336702 35336892 -246856772 + MIR SINE MIR 21 222 -40 2328 102 0 0 chr1 35337006 35337300 -246856364 + AluSg SINE Alu 1 294 -16 2096 128 0 3 chr1 35337301 35337583 -246856081 - AluSx SINE Alu -31 281 1 1006 116 116 70 chr1 35337597 35337796 -246855868 - AluY SINE Alu -1 310 103 10063 87 1 56 chr1 35337897 35339458 -246854206 - L1P LINE L1 -4657 1489 14 439 241 39 2 chr1 35339453 35339593 -246854071 - L1M4c LINE L1 -4596 1786 1533 * 4538 166 18 23 chr1 35339616 35340712 -246852952 - L1PA16 LINE L1 -11 6155 5068 782 247 8 4 chr1 35340715 35340958 -246852706 - L1M4c LINE L1 -3156 3226 2983 1480 246 42 8 chr1 35340968 35341488 -246852176 - L1M4c LINE L1 -4846 1538 1001 1033 271 41 35 chr1 35341467 35341697 -246851967 - L1M4 LINE L1 -942 5440 5213 * 1179 251 96 15 chr1 35341697 35341972 -246851692 - MLT1D LTR MaLR 0 505 254 381 22 0 0 chr1 35341972 35342018 -246851646 + (CA)n Simple_repeat Simple_repeat 2 47 0 1179 251 96 15 chr1 35342018 35342209 -246851455 - MLT1D LTR MaLR -251 254 1 1033 271 41 35 chr1 35342209 35342491 -246851173 - L1M4 LINE L1 -1169 5213 4925 1254 312 56 7 chr1 35343211 35343640 -246850024 - LTR33 LTR ERVL -71 450 1 1086 262 150 104 chr1 35343700 35344748 -246848916 - MER52A LTR ERV1 0 1755 660 213 298 156 28 chr1 35345306 35345447 -246848217 - MIR3 SINE MIR -20 188 30 274 292 83 21 chr1 35345860 35345956 -246847708 + L2 LINE L2 2685 2786 -528 33 56 0 0 chr1 35346096 35346150 -246847514 + AT_rich Low_complexity Low_complexity 1 54 0 2539 102 5 11 chr1 35346568 35346942 -246846722 + THE1C LTR MaLR 3 374 -1 2086 157 11 13 chr1 35346984 35347360 -246846304 + THE1C LTR MaLR 1 375 0 8049 132 69 48 chr1 35347360 35348903 -246844761 + THE1C-int LTR MaLR 1 1576 -4 1486 171 97 12 chr1 35348907 35349228 -246844436 + THE1C LTR MaLR 1 348 -27 457 187 77 0 chr1 35349342 35349433 -246844231 - AluJ/FLAM SINE Alu -213 99 2 288 300 138 19 chr1 35349577 35349737 -246843927 + MIR SINE MIR 84 262 0 2273 118 0 7 chr1 35349932 35350238 -246843426 - AluSx SINE Alu -8 304 1 362 256 231 19 chr1 35350455 35350615 -246843049 - MIR SINE MIR -16 246 53 217 333 74 7 chr1 35351152 35351287 -246842377 + L2 LINE L2 2972 3115 -157 690 286 75 4 chr1 35351358 35351585 -246842079 - MIR SINE MIR 0 262 20 1468 128 86 4 chr1 35352576 35352810 -246840854 + AluJo SINE Alu 1 253 -59 2444 83 0 3 chr1 35353044 35353346 -246840318 - AluSx SINE Alu -11 301 1 459 271 33 8 chr1 35353350 35353472 -246840192 - MIR SINE MIR -65 143 19 2322 97 7 10 chr1 35354424 35354733 -246838931 - AluSg SINE Alu -2 308 1 411 125 0 0 chr1 35354734 35354798 -246838866 + AluSp/q SINE Alu 187 250 -63 1097 143 27 80 chr1 35354798 35355022 -246838642 + AluJb SINE Alu 85 296 -16 31 0 0 0 chr1 35355022 35355053 -246838611 + AT_rich Low_complexity Low_complexity 1 31 0 1863 171 4 0 chr1 35355174 35355487 -246838177 + AluJb SINE Alu 1 314 0 286 183 134 37 chr1 35355497 35355579 -246838085 + U3 snRNA snRNA 1 90 -127 648 161 81 16 chr1 35355661 35355785 -246837879 + AluJo/FLAM SINE Alu 2 133 -169 1660 109 0 5 chr1 35355785 35355995 -246837669 + AluSc SINE Alu 1 209 -100 296 77 0 0 chr1 35355995 35356085 -246837579 + AluSc SINE Alu 242 331 0 1015 128 11 91 chr1 35356245 35356432 -246837232 - AluJ SINE Alu -4 308 137 306 50 0 0 chr1 35356432 35356472 -246837192 + (TTA)n Simple_repeat Simple_repeat 2 41 0 2122 114 3 17 chr1 35356472 35356762 -246836902 - AluSx SINE Alu -26 286 1 297 75 0 0 chr1 35356770 35356810 -246836854 + (T)n Simple_repeat Simple_repeat 1 40 0 886 144 7 55 chr1 35356834 35356980 -246836684 - AluJ SINE Alu -169 143 5 1392 160 0 5 chr1 35357063 35357275 -246836389 - AluJb SINE Alu -17 295 85 2282 77 0 74 chr1 35357276 35357600 -246836064 - AluSg SINE Alu -10 300 1 859 154 6 74 chr1 35357603 35357778 -246835886 - FRAM SINE Alu -3 163 1 2034 162 0 0 chr1 35357797 35358099 -246835565 - AluJo SINE Alu -10 302 1 1940 158 0 19 chr1 35358547 35358863 -246834801 + AluJb SINE Alu 3 312 0 418 240 6 101 chr1 35358868 35359047 -246834617 + MIR SINE MIR 72 233 -29 253 164 43 95 chr1 35359128 35359244 -246834420 + MER113 DNA MER1_type? 108 217 -304 296 240 0 40 chr1 35359412 35359487 -246834177 + AluJo/FLAM SINE Alu 49 120 -182 2154 90 0 8 chr1 35359490 35359758 -246833906 - AluSq SINE Alu -19 294 29 1374 113 6 0 chr1 35359766 35359973 -246833691 + AluSg/x SINE Alu 102 309 0 769 169 0 0 chr1 35359991 35360115 -246833549 - FLAM_C SINE Alu -9 124 1 992 194 6 6 chr1 35360129 35360304 -246833360 + FRAM SINE Alu 1 170 -6 282 263 26 0 chr1 35360304 35360380 -246833284 - L2 LINE L2 -20 3293 3216 666 273 32 28 chr1 35360738 35360954 -246832710 - MIR SINE MIR -38 224 8 236 300 30 10 chr1 35360966 35361066 -246832598 + L1ME4a LINE L1 5959 6060 -61 755 132 0 76 chr1 35361090 35361234 -246832430 - FLAM_C SINE Alu 0 133 1 2380 93 3 6 chr1 35361289 35361602 -246832062 + AluSp SINE Alu 1 312 -1 596 143 0 0 chr1 35361606 35361697 -246831967 + AluSg/x SINE Alu 127 217 -95 1238 120 0 6 chr1 35361697 35361864 -246831800 - AluSx SINE Alu -146 166 1 538 160 11 0 chr1 35361867 35361961 -246831703 - FRAM SINE Alu -19 157 63 273 29 0 0 chr1 35362225 35362259 -246831405 + (TG)n Simple_repeat Simple_repeat 1 34 0 1647 86 14 5 chr1 35362519 35362729 -246830935 + AluSc SINE Alu 1 212 -97 2027 129 17 0 chr1 35362730 35363017 -246830647 - AluSq SINE Alu -21 292 1 276 142 30 67 chr1 35363019 35363085 -246830579 - MIR SINE MIR -62 146 89 432 37 0 0 chr1 35364157 35364211 -246829453 + (TC)n Simple_repeat Simple_repeat 1 54 0 312 303 7 42 chr1 35364326 35364468 -246829196 + MIR3 SINE MIR 60 196 -12 2329 97 10 0 chr1 35366380 35366680 -246826984 + AluSq SINE Alu 10 312 -1 1438 147 3 142 chr1 35366691 35367044 -246826620 + AluSx SINE Alu 1 304 -8 287 274 19 47 chr1 35367895 35368001 -246825663 + MER5B DNA MER1_type 27 129 -49 317 183 183 0 chr1 35369186 35369268 -246824396 + MIR SINE MIR 30 126 -82 2208 120 7 0 chr1 35369444 35369743 -246823921 + AluY SINE Alu 1 301 -10 306 73 0 0 chr1 35369761 35369802 -246823862 + (GGAA)n Simple_repeat Simple_repeat 2 42 0 927 165 51 76 chr1 35369807 35369856 -246823808 - L1ME3A LINE L1 -16 6154 6105 2153 104 7 0 chr1 35369856 35370163 -246823501 + AluSq SINE Alu 6 314 0 927 165 51 76 chr1 35370163 35370349 -246823315 - L1ME3A LINE L1 -65 6105 5924 859 146 44 6 chr1 35370349 35370507 -246823157 - MER5A DNA MER1_type -2 187 24 1105 183 9 43 chr1 35370524 35370754 -246822910 - AluJo SINE Alu -16 296 75 2432 53 0 11 chr1 35370754 35371038 -246822626 + AluY SINE Alu 1 281 -30 1225 160 45 80 chr1 35371038 35371350 -246822314 + AluJb SINE Alu 2 302 -10 2187 96 33 3 chr1 35371403 35371706 -246821958 - AluSx SINE Alu 0 312 1 2431 89 0 3 chr1 35371708 35372012 -246821652 - AluY SINE Alu -8 303 1 2114 127 10 3 chr1 35372014 35372314 -246821350 - AluJb SINE Alu -5 307 6 2273 123 3 0 chr1 35372343 35372653 -246821011 - AluSx SINE Alu -1 311 1 2195 141 0 0 chr1 35372653 35372956 -246820708 - AluSx SINE Alu -8 304 1 243 0 0 0 chr1 35372991 35373018 -246820646 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 693 138 0 43 chr1 35373021 35373159 -246820505 + FLAM_C SINE Alu 1 132 -11 527 77 0 13 chr1 35373611 35373689 -246819975 + (TTCC)n Simple_repeat Simple_repeat 1 77 0 2185 96 20 0 chr1 35373689 35373990 -246819674 - AluSq SINE Alu -6 307 1 1097 75 0 8 chr1 35373993 35374127 -246819537 - AluSq/x SINE Alu -180 133 1 194 233 0 0 chr1 35374236 35374279 -246819385 - MIR SINE MIR -101 161 119 229 273 157 16 chr1 35376376 35376497 -246817167 - L3 LINE CR1 -108 1469 1332 257 353 96 6 chr1 35376802 35376958 -246816706 - L2 LINE L2 -254 3059 2890 681 140 88 0 chr1 35376960 35377074 -246816590 - Tigger7 DNA MER2_type 0 2487 2364 224 49 49 0 chr1 35377074 35377115 -246816549 + (TTTTA)n Simple_repeat Simple_repeat 2 180 0 1225 108 0 6 chr1 35377115 35377281 -246816383 - AluSg/x SINE Alu -1 323 119 186 43 0 0 chr1 35377285 35377308 -246816356 + (TTTTA)n Simple_repeat Simple_repeat 5 27 0 1079 173 0 0 chr1 35377316 35377478 -246816186 - AluSg/x SINE Alu -21 291 130 1935 168 3 13 chr1 35377488 35377661 -246816003 - AluSx SINE Alu -6 306 136 2168 135 0 22 chr1 35377661 35377980 -246815684 - AluSx SINE Alu 0 312 1 1935 168 3 13 chr1 35377980 35378115 -246815549 - AluSx SINE Alu -176 136 1 377 96 169 0 chr1 35378115 35378198 -246815466 - Tigger7 DNA MER2_type -121 2466 2370 453 173 25 0 chr1 35378251 35378332 -246815332 + AluJ/FLAM SINE Alu 2 84 -228 309 274 19 47 chr1 35378913 35379019 -246814645 + MER5B DNA MER1_type 27 129 -49 356 218 196 15 chr1 35380204 35380337 -246813327 + MIR3 SINE MIR 30 186 -22 2200 120 7 0 chr1 35380462 35380761 -246812903 + AluY SINE Alu 1 301 -10 306 73 0 0 chr1 35380779 35380820 -246812844 + (GGAA)n Simple_repeat Simple_repeat 2 42 0 915 151 53 80 chr1 35380825 35380874 -246812790 - L1ME3A LINE L1 -16 6154 6105 2141 104 7 0 chr1 35380874 35381181 -246812483 + AluSq SINE Alu 6 314 0 915 151 53 80 chr1 35381181 35381355 -246812309 - L1ME3A LINE L1 -65 6105 5936 928 145 44 6 chr1 35381366 35381525 -246812139 - MER5A DNA MER1_type -1 188 24 1107 183 9 43 chr1 35381542 35381772 -246811892 - AluJo SINE Alu -16 296 75 2571 32 0 0 chr1 35381772 35382053 -246811611 + AluYa5 SINE Alu 1 281 -30 1249 160 45 80 chr1 35382053 35382365 -246811299 + AluJb SINE Alu 2 302 0 2147 102 33 3 chr1 35382418 35382721 -246810943 - AluSx SINE Alu 0 312 1 2209 114 3 16 chr1 35382723 35383031 -246810633 - AluSx SINE Alu -8 304 1 183 139 0 0 chr1 35383039 35383075 -246810589 + (T)n Simple_repeat Simple_repeat 1 36 0 884 144 7 55 chr1 35383099 35383245 -246810419 - AluJo SINE Alu -169 143 5 1387 160 0 5 chr1 35383328 35383540 -246810124 - AluJb SINE Alu -17 295 85 2274 77 0 74 chr1 35383541 35383865 -246809799 - AluSg SINE Alu -10 300 1 931 154 6 74 chr1 35383868 35384043 -246809621 - FRAM SINE Alu -3 163 1 2010 166 0 0 chr1 35384062 35384364 -246809300 - AluJo SINE Alu -10 302 1 1931 158 0 19 chr1 35384812 35385128 -246808536 + AluJb SINE Alu 3 312 0 451 240 6 101 chr1 35385133 35385312 -246808352 + MIR SINE MIR 72 233 -29 304 176 59 12 chr1 35385393 35385478 -246808186 + MER113 DNA MER1_type? 108 196 -325 282 240 0 40 chr1 35385677 35385752 -246807912 + AluJo/FLAM SINE Alu 49 120 -182 2145 97 0 4 chr1 35385755 35386022 -246807642 - AluSq SINE Alu -19 294 29 1274 147 6 0 chr1 35386030 35386237 -246807427 + AluSg/x SINE Alu 104 311 0 822 169 0 0 chr1 35386255 35386379 -246807285 - FLAM_C SINE Alu -9 124 1 992 194 6 6 chr1 35386393 35386568 -246807096 + FRAM SINE Alu 1 170 -6 301 263 26 0 chr1 35386568 35386644 -246807020 - L2 LINE L2 -20 3293 3216 718 273 32 28 chr1 35387002 35387218 -246806446 - MIR SINE MIR -38 224 8 811 132 0 76 chr1 35387354 35387498 -246806166 - FLAM_C SINE Alu 0 133 1 2369 93 3 6 chr1 35387553 35387866 -246805798 + AluSp SINE Alu 1 312 -1 635 143 0 0 chr1 35387870 35387961 -246805703 + AluSg/x SINE Alu 125 215 -95 1234 120 0 6 chr1 35387961 35388128 -246805536 - AluSx SINE Alu -146 166 1 574 160 11 0 chr1 35388131 35388225 -246805439 - FRAM SINE Alu -19 157 63 273 29 0 0 chr1 35388489 35388523 -246805141 + (TG)n Simple_repeat Simple_repeat 1 34 0 1636 86 14 5 chr1 35388783 35388993 -246804671 + AluSc SINE Alu 1 212 -97 1948 124 17 10 chr1 35388994 35389284 -246804380 - AluSq SINE Alu -21 292 1 297 142 30 67 chr1 35389286 35389352 -246804312 - MIR SINE MIR -62 146 89 432 37 0 0 chr1 35390424 35390478 -246803186 + (TC)n Simple_repeat Simple_repeat 1 54 0 335 303 7 42 chr1 35390593 35390735 -246802929 + MIR3 SINE MIR 60 196 -12 186 304 58 0 chr1 35392571 35392640 -246801024 - MIR SINE MIR -109 153 81 2343 93 10 0 chr1 35392647 35392947 -246800717 + AluSq SINE Alu 10 312 -1 1426 153 0 139 chr1 35392958 35393311 -246800353 + AluSx SINE Alu 1 304 -8 431 20 0 0 chr1 35393820 35393869 -246799795 + (TC)n Simple_repeat Simple_repeat 2 50 0 623 113 0 17 chr1 35396316 35396432 -246797232 - L1MA3 LINE L1 -27 6276 6168 1143 155 0 11 chr1 35396435 35396609 -246797055 + AluJo SINE Alu 126 297 -15 24 0 0 0 chr1 35396611 35396635 -246797029 + AT_rich Low_complexity Low_complexity 1 24 0 2356 92 0 0 chr1 35396707 35397010 -246796654 - AluY SINE Alu -8 303 1 2278 104 7 0 chr1 35397010 35397309 -246796355 - AluSp SINE Alu -12 301 1 1087 83 0 0 chr1 35397312 35397444 -246796220 - AluSq/x SINE Alu -181 132 1 433 315 61 20 chr1 35397783 35397980 -246795684 + L3 LINE CR1 1362 1566 -11 243 256 38 7 chr1 35398028 35398108 -246795556 + GA-rich Low_complexity Low_complexity 1 82 0 413 278 112 69 chr1 35398237 35398763 -246794901 - L1M4 LINE L1 -1206 1537 937 23 33 0 0 chr1 35399027 35399057 -246794607 + GC_rich Low_complexity Low_complexity 1 30 0 344 238 238 24 chr1 35399663 35399827 -246793837 - L2 LINE L2 -180 3092 2894 2495 66 3 3 chr1 35399833 35400134 -246793530 + AluSx SINE Alu 1 301 -11 209 358 91 11 chr1 35400134 35400278 -246793386 - L2 LINE L2 -483 2831 2667 2086 139 0 19 chr1 35400278 35400416 -246793248 + AluSx SINE Alu 1 140 -172 2492 81 0 0 chr1 35400416 35400713 -246792951 + AluSg SINE Alu 1 297 -13 2086 139 0 19 chr1 35400713 35400884 -246792780 + AluSx SINE Alu 140 304 -8 209 358 91 11 chr1 35400884 35400926 -246792738 - L2 LINE L2 -647 2667 2630 2060 104 10 24 chr1 35400942 35401230 -246792434 - AluSx SINE Alu -17 295 12 2155 82 0 47 chr1 35401305 35401622 -246792042 - AluY SINE Alu -9 302 1 469 119 0 0 chr1 35401623 35401690 -246791974 + AluSc SINE Alu 185 251 -58 1723 144 35 18 chr1 35402422 35402706 -246790958 - AluJb SINE Alu -21 291 3 2402 85 0 19 chr1 35402710 35403026 -246790638 - AluY SINE Alu -1 310 1 809 115 0 72 chr1 35403031 35403170 -246790494 - FLAM_C SINE Alu -5 138 10 239 270 0 32 chr1 35403220 35403283 -246790381 - L2 LINE L2 -979 2335 2275 1009 166 121 87 chr1 35403298 35403345 -246790319 - MLT1A1 LTR MaLR 0 457 413 1798 166 45 0 chr1 35403345 35403635 -246790029 + AluJb SINE Alu 2 304 -8 1009 166 121 87 chr1 35403635 35403954 -246789710 - MLT1A1 LTR MaLR -44 413 1 249 33 0 0 chr1 35403974 35404004 -246789660 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 531 168 178 0 chr1 35404004 35404105 -246789559 - FLAM_C SINE Alu -24 119 1 513 281 58 0 chr1 35404276 35404415 -246789249 + L2 LINE L2 3167 3313 0 1626 135 46 92 chr1 35404587 35404891 -246788773 - AluJb SINE Alu -22 290 1 262 344 129 34 chr1 35404978 35405426 -246788238 - L2 LINE L2 -1635 1679 1189 1682 142 13 63 chr1 35405472 35405789 -246787875 + AluJb SINE Alu 1 301 -11 2100 81 14 30 chr1 35405825 35405990 -246787674 - AluY SINE Alu -20 291 125 2608 64 0 0 chr1 35405990 35406301 -246787363 - AluY SINE Alu 0 311 1 2389 77 7 3 chr1 35406301 35406599 -246787065 - AluSp SINE Alu -14 299 1 2100 81 14 30 chr1 35406599 35406728 -246786936 - AluY SINE Alu -184 127 1 294 320 87 0 chr1 35406782 35406885 -246786779 + MIR SINE MIR 50 161 -101 2288 101 0 3 chr1 35406933 35407229 -246786435 + AluSx SINE Alu 6 300 -12 519 150 210 0 chr1 35407523 35407623 -246786041 + FLAM_C SINE Alu 11 131 -12 2506 72 0 7 chr1 35407987 35408292 -246785372 + AluY SINE Alu 1 303 -8 328 224 141 0 chr1 35408315 35408400 -246785264 + MIR SINE MIR 30 126 -82 208 355 130 49 chr1 35408428 35408513 -246785151 - L2 LINE L2 -72 3200 3123 1922 137 7 11 chr1 35408513 35408798 -246784866 + AluSx SINE Alu 27 310 -2 208 355 130 49 chr1 35408798 35409015 -246784649 - L2 LINE L2 -149 3123 2868 1212 166 0 48 chr1 35409015 35409244 -246784420 - MER58A DNA MER1_type -4 220 3 208 355 130 49 chr1 35409244 35409264 -246784400 - L2 LINE L2 -404 2868 2851 2590 68 0 0 chr1 35409377 35409687 -246783977 + AluY SINE Alu 1 310 -1 2238 116 3 0 chr1 35409700 35409993 -246783671 + AluSx SINE Alu 1 294 -18 628 143 0 31 chr1 35410031 35410129 -246783535 - FLAM_A SINE Alu -43 99 5 348 377 63 0 chr1 35410148 35410323 -246783341 - L2 LINE L2 -533 2781 2596 272 200 70 80 chr1 35410323 35410423 -246783241 + MIR SINE MIR 117 215 -47 189 289 19 0 chr1 35411033 35411085 -246782579 - L2 LINE L2 0 3313 3261 1907 167 0 3 chr1 35411102 35411396 -246782268 + AluJo SINE Alu 1 293 -19 1900 163 26 10 chr1 35411396 35411702 -246781962 + AluJb SINE Alu 1 312 0 326 205 0 26 chr1 35411808 35411886 -246781778 - Charlie8 DNA MER1_type -2254 163 88 1186 174 5 16 chr1 35411893 35412083 -246781581 + AluJb SINE Alu 104 291 -21 193 297 54 14 chr1 35412262 35412336 -246781328 - L2 LINE L2 -665 2649 2573 1471 185 0 53 chr1 35412640 35412775 -246780889 - AluJo SINE Alu -43 269 155 2020 149 23 3 chr1 35412775 35413076 -246780588 - AluSx SINE Alu -5 307 1 1471 185 0 53 chr1 35413076 35413221 -246780443 - AluJo SINE Alu -157 155 4 29 28 0 0 chr1 35413226 35413262 -246780402 + AT_rich Low_complexity Low_complexity 1 36 0 1200 260 116 8 chr1 35413277 35413308 -246780356 - L1ME3A LINE L1 -209 5961 5931 450 303 129 26 chr1 35413308 35413814 -246779850 - L1MB4 LINE L1 -253 5927 5362 1952 172 3 0 chr1 35413814 35414122 -246779542 - AluJb SINE Alu -3 309 1 450 303 129 26 chr1 35414122 35414150 -246779514 - L1MB4 LINE L1 -818 5362 5338 257 204 0 0 chr1 35414153 35414202 -246779462 - L2 LINE L2 0 3313 3265 581 216 23 29 chr1 35414202 35414373 -246779291 - L1MB4 LINE L1 -1303 4843 4674 1774 107 114 11 chr1 35414390 35414670 -246778994 - AluSg1 SINE Alu 0 309 1 866 181 0 0 chr1 35414670 35414801 -246778863 - AluJo/FRAM SINE Alu -10 302 169 2394 197 49 43 chr1 35414950 35415176 -246778488 - Tigger7 DNA MER2_type 0 2587 2364 2216 130 3 0 chr1 35415176 35415476 -246778188 + AluSq SINE Alu 1 301 -12 2394 197 49 43 chr1 35415476 35415942 -246777722 - Tigger7 DNA MER2_type -223 2364 1 180 235 0 0 chr1 35416003 35416037 -246777627 - L2 LINE L2 -229 3043 3010 2501 65 3 0 chr1 35416250 35416543 -246777121 + AluSp SINE Alu 1 294 -19 180 0 0 0 chr1 35416704 35416724 -246776940 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2462 80 0 0 chr1 35416729 35417030 -246776634 - AluY SINE Alu -10 301 1 1850 181 3 0 chr1 35417032 35417324 -246776340 - AluJb SINE Alu -19 293 1 295 316 101 89 chr1 35417329 35417576 -246776088 - L2 LINE L2 -1 3271 3022 897 198 0 45 chr1 35417582 35417617 -246776047 - FAM SINE Alu -140 45 146 2335 93 23 0 chr1 35417617 35417918 -246775746 + AluSq SINE Alu 1 308 -5 897 198 0 45 chr1 35417918 35418059 -246775605 - FAM SINE Alu -38 147 1 218 316 158 26 chr1 35418064 35418216 -246775448 - L2 LINE L2 -243 3029 2858 256 194 32 32 chr1 35418306 35418368 -246775296 + Charlie8 DNA MER1_type 149 210 -2207 318 312 45 26 chr1 35418488 35418642 -246775022 - L2 LINE L2 -470 2844 2688 831 177 0 0 chr1 35418646 35418776 -246774888 + FLAM_A SINE Alu 3 132 -1 2271 97 13 0 chr1 35418780 35419190 -246774474 + AluSq SINE Alu 1 414 0 366 317 193 15 chr1 35419190 35419392 -246774272 - L2 LINE L2 -622 2692 2455 2134 131 3 0 chr1 35419403 35419693 -246773971 + AluSx SINE Alu 6 296 -16 244 359 58 52 chr1 35419796 35420178 -246773486 - L2 LINE L2 -778 2536 2153 722 211 8 8 chr1 35420223 35420356 -246773308 - FLAM_A SINE Alu 0 133 1 513 248 8 32 chr1 35420439 35420564 -246773100 + MIR SINE MIR 36 157 -105 2164 121 7 3 chr1 35420568 35420873 -246772791 - AluSq SINE Alu -7 306 1 2226 133 0 0 chr1 35420879 35421188 -246772476 - AluSx SINE Alu -3 309 1 2052 124 7 0 chr1 35421286 35421607 -246772057 - AluSq SINE Alu 0 313 1 461 143 0 0 chr1 35421632 35421695 -246771969 - FLAM SINE Alu -26 117 55 315 250 62 10 chr1 35421706 35421802 -246771862 + MIR SINE MIR 162 262 0 4932 130 46 36 chr1 35421832 35422416 -246771248 + MER6 DNA MER2_type 3 580 -285 1972 142 3 7 chr1 35422416 35422705 -246770959 - AluJb SINE Alu -24 288 1 4932 130 46 36 chr1 35422705 35422758 -246770906 + MER6 DNA MER2_type 580 631 -234 2596 57 0 0 chr1 35422758 35423056 -246770608 + AluY SINE Alu 2 299 -12 4932 130 46 36 chr1 35423056 35423268 -246770396 + MER6 DNA MER2_type 631 861 -4 2371 112 0 0 chr1 35423561 35423865 -246769799 - AluSq SINE Alu -9 304 1 655 71 301 0 chr1 35423877 35423990 -246769674 - THE1B LTR MaLR -214 150 4 775 106 0 0 chr1 35423990 35424094 -246769570 - FLAM_C SINE Alu -38 105 2 198 118 0 0 chr1 35424100 35424134 -246769530 + (T)n Simple_repeat Simple_repeat 1 34 0 931 154 6 74 chr1 35424275 35424450 -246769214 + FRAM SINE Alu 1 163 -3 2340 88 0 23 chr1 35424453 35424759 -246768905 + AluSg SINE Alu 1 299 -11 2300 106 3 3 chr1 35424760 35425063 -246768601 + AluSg SINE Alu 1 303 -7 1369 118 0 44 chr1 35425065 35425269 -246768395 - AluJb SINE Alu -115 197 3 235 246 0 18 chr1 35425391 35425448 -246768216 + GA-rich Low_complexity Low_complexity 1 56 0 1923 141 3 7 chr1 35425657 35425993 -246767671 + AluSx SINE Alu 1 335 0 1012 209 5 15 chr1 35425998 35426194 -246767470 + AluJb SINE Alu 1 194 -118 1703 146 4 21 chr1 35426197 35426478 -246767186 + AluJb SINE Alu 25 300 -12 746 143 18 0 chr1 35426931 35427043 -246766621 + FLAM_A SINE Alu 13 126 -16 224 295 91 8 chr1 35427072 35427191 -246766473 + MIR3 SINE MIR 66 156 -52 886 146 0 0 chr1 35427311 35427441 -246766223 - FLAM_C SINE Alu -3 130 1 2013 110 88 0 chr1 35427468 35427740 -246765924 + AluSx SINE Alu 1 296 -16 746 143 18 0 chr1 35428424 35428536 -246765128 + FLAM_A SINE Alu 13 126 -16 224 281 97 0 chr1 35428566 35428652 -246765012 + MIR3 SINE MIR 67 160 -48 772 128 0 0 chr1 35428868 35428977 -246764687 - FLAM_C SINE Alu -33 110 2 1936 99 88 0 chr1 35429005 35429278 -246764386 + AluSx SINE Alu 1 297 -15 222 118 0 0 chr1 35429888 35429922 -246763742 + (TTCTCC)n Simple_repeat Simple_repeat 4 37 0 659 182 99 0 chr1 35429922 35430043 -246763621 - FLAM_C SINE Alu 0 133 1 1610 141 0 66 chr1 35430043 35430291 -246763373 - AluJb SINE Alu -23 289 63 2180 86 0 32 chr1 35430291 35430606 -246763058 + AluY SINE Alu 1 305 -6 1610 141 0 66 chr1 35430606 35430662 -246763002 - AluJb SINE Alu -249 63 5 1164 105 0 82 chr1 35430766 35430941 -246762723 + MER6 DNA MER2_type 450 605 -260 1855 142 3 7 chr1 35430941 35431230 -246762434 - AluJb SINE Alu -24 288 1 1164 105 0 82 chr1 35431230 35431273 -246762391 + MER6 DNA MER2_type 605 650 -215 2273 82 7 0 chr1 35431283 35431588 -246762076 + AluSx SINE Alu 2 308 -4 2371 58 0 7 chr1 35431598 35431892 -246761772 + AluY SINE Alu 1 292 -19 308 260 96 0 chr1 35431940 35432044 -246761620 - MIR SINE MIR -70 192 79 300 288 144 13 chr1 35432628 35432781 -246760883 + MIR3 SINE MIR 16 188 -20 2007 89 39 0 chr1 35433568 35433848 -246759816 - AluSp SINE Alu -22 291 1 1797 136 24 20 chr1 35433874 35434168 -246759496 + AluJb SINE Alu 1 295 -17 26 0 0 0 chr1 35434212 35434238 -246759426 + AT_rich Low_complexity Low_complexity 1 26 0 2278 95 0 0 chr1 35434436 35434730 -246758934 + AluSx SINE Alu 1 294 -18 732 168 0 0 chr1 35434740 35434847 -246758817 + FLAM_A SINE Alu 18 124 -18 577 186 0 0 chr1 35435064 35435166 -246758498 - FRAM SINE Alu -3 173 72 1292 176 13 70 chr1 35435215 35435527 -246758137 + AluJo SINE Alu 2 295 -17 2302 69 0 13 chr1 35435534 35435838 -246757826 + AluY SINE Alu 1 300 -11 207 311 81 0 chr1 35436097 35436171 -246757493 - MIR SINE MIR -92 116 37 2264 119 0 0 chr1 35436217 35436529 -246757135 + AluSx SINE Alu 1 312 0 2139 77 0 0 chr1 35436582 35436855 -246756809 + AluY SINE Alu 34 306 -5 2141 102 27 0 chr1 35437876 35438170 -246755494 - AluSx SINE Alu -10 302 1 681 275 22 27 chr1 35438371 35438593 -246755071 + MIR SINE MIR 12 232 -30 2289 76 3 7 chr1 35438622 35438924 -246754740 + AluSg SINE Alu 1 301 -9 227 378 31 0 chr1 35438925 35439052 -246754612 - L2 LINE L2 -486 2828 2698 1915 144 0 20 chr1 35439066 35439204 -246754460 + AluSx SINE Alu 1 140 -172 2329 81 0 3 chr1 35439204 35439502 -246754162 + AluSg SINE Alu 1 297 -13 1915 144 0 20 chr1 35439502 35439668 -246753996 + AluSx SINE Alu 140 299 -13 1997 146 0 0 chr1 35440030 35440332 -246753332 - AluSx SINE Alu -10 302 1 320 333 63 0 chr1 35440334 35440460 -246753204 + MIR SINE MIR 123 256 -6 1165 192 108 63 chr1 35440649 35440936 -246752728 + AluJo SINE Alu 1 300 -2 300 324 37 0 chr1 35440943 35441051 -246752613 - MIR SINE MIR -139 123 12 1489 147 51 48 chr1 35441327 35441619 -246752045 + AluJb SINE Alu 6 298 -14 308 270 81 67 chr1 35442019 35442378 -246751286 - L1ME4a LINE L1 -54 6067 5704 2170 82 0 10 chr1 35442378 35442669 -246750995 + AluSx SINE Alu 1 288 -24 2083 117 0 13 chr1 35442795 35443102 -246750562 - AluSx SINE Alu -9 303 1 502 209 45 142 chr1 35443116 35443384 -246750280 + MER112 DNA MER1_type 8 249 -11 1674 116 11 36 chr1 35444955 35445232 -246748432 - AluSg SINE Alu -15 295 26 193 317 175 25 chr1 35445969 35446089 -246747575 - L2 LINE L2 -17 3255 3118 1139 172 22 26 chr1 35446104 35446331 -246747333 - L1M3e LINE L1 -5010 2020 1795 183 304 106 63 chr1 35446398 35446605 -246747059 - L2 LINE L2 -213 3059 2844 213 345 142 35 chr1 35446712 35446938 -246746726 - L2 LINE L2 -6 3266 3017 32 0 0 0 chr1 35449769 35449801 -246743863 + AT_rich Low_complexity Low_complexity 1 32 0 25 51 0 0 chr1 35452329 35452368 -246741296 + GC_rich Low_complexity Low_complexity 1 39 0 22 35 0 0 chr1 35452384 35452413 -246741251 + GC_rich Low_complexity Low_complexity 1 29 0 30 0 0 0 chr1 35452501 35452531 -246741133 + GC_rich Low_complexity Low_complexity 1 30 0 233 268 270 25 chr1 35453764 35454160 -246739504 - L2 LINE L2 -742 2572 2080 801 162 0 0 chr1 35454554 35454690 -246738974 - FRAM SINE Alu -1 175 40 1115 118 140 0 chr1 35455478 35455664 -246738000 + MER30 DNA MER1_type 1 212 -18 434 324 129 47 chr1 35455766 35456022 -246737642 - L1MC4a LINE L1 -1160 6648 6372 455 188 51 8 chr1 35456043 35456160 -246737504 - L1MB7 LINE L1 0 6184 6063 2305 87 3 0 chr1 35456165 35456464 -246737200 - AluY SINE Alu -11 300 1 6506 125 86 5 chr1 35456464 35457551 -246736113 - Tigger1 DNA MER2_type -1236 1182 8 448 111 28 0 chr1 35457927 35457999 -246735665 - AluSq/x SINE Alu -199 113 40 254 80 0 40 chr1 35458000 35458050 -246735614 + Alu SINE Alu 254 301 0 * 383 156 0 0 chr1 35458049 35458113 -246735551 + MLT1C LTR MaLR 112 175 -292 598 40 0 13 chr1 35458116 35458192 -246735472 - AluSg/x SINE Alu -20 289 215 760 222 27 7 chr1 35458192 35458433 -246735231 + MLT1C LTR MaLR 172 467 0 194 305 32 21 chr1 35458433 35458528 -246735136 + L2 LINE L2 3185 3280 -33 336 272 179 23 chr1 35459789 35459962 -246733702 + MIR SINE MIR 7 206 -56 826 148 40 7 chr1 35459962 35460111 -246733553 + FRAM SINE Alu 1 153 -23 1478 147 4 49 chr1 35460968 35461233 -246732431 + AluJb SINE Alu 44 296 -16 2458 57 7 0 chr1 35461304 35461603 -246732061 - AluY SINE Alu -10 301 1 319 193 193 9 chr1 35461791 35461900 -246731764 + MIR SINE MIR 21 149 -113 260 269 62 56 chr1 35461915 35462075 -246731589 - MER5A DNA MER1_type -28 161 1 900 263 148 23 chr1 35463322 35463509 -246730155 + L2 LINE L2 832 994 -2320 1786 157 3 10 chr1 35463509 35463815 -246729849 - AluJb SINE Alu -7 305 2 900 263 148 23 chr1 35463815 35464065 -246729599 + L2 LINE L2 994 1324 -1990 246 276 21 97 chr1 35464093 35464238 -246729426 + MIR SINE MIR 119 252 -10 435 315 34 14 chr1 35464309 35464455 -246729209 - MIR SINE MIR -112 150 2 2312 70 7 0 chr1 35464864 35465162 -246728502 + AluY SINE Alu 1 300 -11 186 311 0 0 chr1 35465701 35465746 -246727918 - MIR SINE MIR -82 126 82 581 236 62 14 chr1 35465824 35465968 -246727696 + MIR SINE MIR 4 154 -108 269 91 303 0 chr1 35466036 35466102 -246727562 - HsTC2 DNA Tc2 -1811 87 2 2210 88 0 16 chr1 35466842 35467147 -246726517 + AluSx SINE Alu 1 300 -12 249 316 37 44 chr1 35467283 35467419 -246726245 + MIR SINE MIR 16 150 -112 349 268 115 32 chr1 35467572 35467729 -246725935 - MER5A DNA MER1_type 0 189 20 252 343 170 18 chr1 35469023 35469469 -246724195 + L2 LINE L2 1801 2314 -1000 964 181 18 0 chr1 35469590 35469761 -246723903 - AluJo SINE Alu -17 295 122 290 316 71 25 chr1 35469773 35469969 -246723695 + L2 LINE L2 2554 2758 -556 283 323 21 94 chr1 35470277 35470358 -246723306 + L2 LINE L2 2949 3034 -238 2088 95 0 3 chr1 35470358 35470672 -246722992 + AluSx SINE Alu 3 315 0 283 323 21 94 chr1 35470672 35470917 -246722747 + L2 LINE L2 3034 3252 -20 22 0 0 0 chr1 35472162 35472184 -246721480 + GC_rich Low_complexity Low_complexity 1 22 0 307 217 11 54 chr1 35473397 35473489 -246720175 - MIR SINE MIR -55 153 66 314 314 0 0 chr1 35474220 35474357 -246719307 + (TG)n Simple_repeat Simple_repeat 1 137 0 437 157 12 12 chr1 35474520 35474603 -246719061 + AluJ/FLAM SINE Alu 2 84 -228 206 306 0 0 chr1 35475134 35475196 -246718468 - L2 LINE L2 -292 2980 2919 369 267 52 0 chr1 35475272 35475407 -246718257 + MIR3 SINE MIR 22 163 -45 1810 134 0 4 chr1 35476261 35476529 -246717135 + AluSx SINE Alu 28 294 -18 845 122 0 30 chr1 35476550 35476681 -246716983 + FLAM_C SINE Alu 1 127 -16 1661 126 56 4 chr1 35476686 35476988 -246716676 + AluSx SINE Alu 1 316 0 262 331 141 0 chr1 35477033 35477154 -246716510 - MIR SINE MIR -8 254 117 2235 108 3 0 chr1 35477956 35478263 -246715401 + AluSq SINE Alu 1 308 -5 253 343 67 8 chr1 35478359 35478493 -246715171 + MIR SINE MIR 51 192 -70 494 207 120 53 chr1 35478531 35478681 -246714983 + MIR SINE MIR 63 222 -40 2165 99 0 13 chr1 35478686 35478982 -246714682 + AluSc SINE Alu 1 294 -15 396 40 0 0 chr1 35478982 35479032 -246714632 + (CA)n Simple_repeat Simple_repeat 2 51 0 222 191 0 0 chr1 35479338 35479385 -246714279 + CT-rich Low_complexity Low_complexity 2 48 0 1781 150 7 16 chr1 35479393 35479699 -246713965 - AluJo SINE Alu 0 312 10 2400 87 0 0 chr1 35479911 35480222 -246713442 - AluSx SINE Alu -1 311 1 403 164 106 39 chr1 35480251 35480355 -246713309 - MSTD LTR MaLR -285 111 1 379 261 125 28 chr1 35480373 35480489 -246713175 + L2 LINE L2 2870 3010 -262 2428 84 0 0 chr1 35480489 35480797 -246712867 - AluSx SINE Alu -4 308 1 379 261 125 28 chr1 35480797 35480856 -246712808 + L2 LINE L2 3010 3062 -210 232 204 20 0 chr1 35481387 35481436 -246712228 - L2 LINE L2 -690 2624 2575 356 315 238 9 chr1 35481502 35481692 -246711972 - L2 LINE L2 -950 2364 2219 1037 82 0 15 chr1 35481692 35481827 -246711837 + FLAM_C SINE Alu 1 133 0 356 315 238 9 chr1 35481827 35481976 -246711688 - L2 LINE L2 -1095 2219 1947 244 211 70 0 chr1 35482312 35482369 -246711295 + L2 LINE L2 2214 2274 -1040 1999 111 40 0 chr1 35482781 35483078 -246710586 - AluSq SINE Alu -4 309 1 2145 92 7 0 chr1 35483334 35483647 -246710017 - AluSx SINE Alu 0 315 1 185 340 117 31 chr1 35483792 35484048 -246709616 + L2 LINE L2 2933 3210 -62 862 270 14 10 chr1 35484436 35484685 -246708979 + MIR SINE MIR 15 262 0 239 139 0 0 chr1 35484691 35484727 -246708937 + MIR SINE MIR 40 75 -133 236 287 32 11 chr1 35484942 35485036 -246708628 + L3b LINE CR1 1289 1384 -199 272 173 210 0 chr1 35485428 35485509 -246708155 - L2 LINE L2 -3 3269 3172 1968 36 109 0 chr1 35485511 35485758 -246707906 + AluY SINE Alu 6 279 -32 403 304 8 8 chr1 35485833 35485958 -246707706 + L2 LINE L2 3142 3266 -47 2016 134 3 3 chr1 35486002 35486307 -246707357 - AluSx SINE Alu -7 305 1 255 285 6 50 chr1 35487122 35487301 -246706363 + C-rich Low_complexity Low_complexity 3 173 0 22 0 0 0 chr1 35487477 35487499 -246706165 + GC_rich Low_complexity Low_complexity 1 22 0 1722 149 14 7 chr1 35488240 35488529 -246705135 - AluJb SINE Alu -21 291 1 1452 150 12 78 chr1 35488529 35488728 -246704936 - AluJb SINE Alu 0 312 142 225 0 0 0 chr1 35488728 35488753 -246704911 + (TG)n Simple_repeat Simple_repeat 2 26 0 1452 150 12 78 chr1 35488753 35488887 -246704777 - AluJb SINE Alu -170 142 1 248 284 84 0 chr1 35489117 35489212 -246704452 - MIR3 SINE MIR -22 186 84 1440 288 174 28 chr1 35489579 35490313 -246703351 + L2 LINE L2 1616 2523 -791 2231 91 7 0 chr1 35490313 35490610 -246703054 - AluSg SINE Alu -11 299 1 1440 288 174 28 chr1 35490610 35490832 -246702832 + L2 LINE L2 2523 2711 -603 181 320 107 10 chr1 35490908 35491011 -246702653 + L2 LINE L2 2969 3081 -191 259 335 94 21 chr1 35491380 35491571 -246702093 - L2 LINE L2 -550 2764 2560 2311 100 0 0 chr1 35491729 35492038 -246701626 - AluSg SINE Alu -1 309 1 1405 151 43 0 chr1 35492058 35492290 -246701374 - AluJb SINE Alu -64 248 7 1808 175 0 13 chr1 35492298 35492788 -246700876 - AluJb SINE Alu 0 488 3 606 278 61 14 chr1 35493150 35493362 -246700302 - MIR SINE MIR -38 224 3 410 289 0 10 chr1 35494087 35494191 -246699473 - MIR SINE MIR -112 150 48 2313 81 0 3 chr1 35494694 35494992 -246698672 - AluY SINE Alu -14 297 1 1754 140 14 17 chr1 35494995 35495287 -246698377 - AluJo SINE Alu -21 291 1 251 246 159 0 chr1 35495838 35495907 -246697757 + MIR3 SINE MIR 78 157 -51 2340 91 3 0 chr1 35495912 35496220 -246697444 - AluSg SINE Alu 0 310 2 923 128 14 0 chr1 35496411 35496552 -246697112 + AluSg/x SINE Alu 138 280 -30 703 0 11 11 chr1 35496552 35496640 -246697024 + (TAGA)n Simple_repeat Simple_repeat 4 91 0 205 137 20 39 chr1 35497391 35497442 -246696222 + G-rich Low_complexity Low_complexity 3 52 0 24 32 0 0 chr1 35497633 35497664 -246696000 + GC_rich Low_complexity Low_complexity 1 31 0 2007 107 24 0 chr1 35500168 35500458 -246693206 - AluSx SINE Alu -14 298 2 203 138 0 0 chr1 35500935 35500964 -246692700 + (TTTC)n Simple_repeat Simple_repeat 2 30 0 25 0 0 0 chr1 35500994 35501019 -246692645 + AT_rich Low_complexity Low_complexity 1 25 0 225 293 40 0 chr1 35503310 35503385 -246690279 + MIR SINE MIR 36 113 -149 383 244 109 45 chr1 35503482 35503638 -246690026 - MIR SINE MIR -4 258 93 915 109 0 51 chr1 35503754 35503892 -246689772 - FLAM_C SINE Alu -1 132 2 194 300 17 33 chr1 35503894 35503954 -246689710 + MER5B DNA MER1_type 115 173 -5 425 335 68 29 chr1 35504396 35504422 -246689242 + L1ME4a LINE L1 5606 5630 -491 2129 101 10 3 chr1 35504422 35504720 -246688944 - AluSx SINE Alu -12 300 1 425 335 68 29 chr1 35504720 35504974 -246688690 + L1ME4a LINE L1 5630 5897 -224 1087 163 5 15 chr1 35505048 35505244 -246688420 + AluJo SINE Alu 104 297 -15 653 274 46 33 chr1 35505272 35505513 -246688151 + L2 LINE L2 2853 3096 -217 1151 107 0 24 chr1 35505516 35505685 -246687979 - AluSg/x SINE Alu -14 298 134 2251 105 0 6 chr1 35505685 35505999 -246687665 - AluSx SINE Alu 0 312 1 282 288 82 35 chr1 35506007 35506177 -246687487 + L2 LINE L2 3114 3291 -22 795 215 169 20 chr1 35506199 35506244 -246687420 + MER58A DNA MER1_type 1 38 -2382 2281 84 0 10 chr1 35506244 35506555 -246687109 + AluY SINE Alu 2 309 -2 795 215 169 20 chr1 35506555 35506704 -246686960 + MER58A DNA MER1_type 38 224 0 291 313 97 14 chr1 35506856 35507000 -246686664 + L1ME4a LINE L1 5900 6055 -66 2509 56 7 0 chr1 35507028 35507333 -246686331 - AluY SINE Alu -4 307 1 319 193 193 9 chr1 35507521 35507630 -246686034 + MIR SINE MIR 21 149 -113 260 269 62 56 chr1 35507645 35507805 -246685859 - MER5A DNA MER1_type -28 161 1 900 263 148 23 chr1 35509052 35509239 -246684425 + L2 LINE L2 832 994 -2320 1786 157 3 10 chr1 35509239 35509545 -246684119 - AluJb SINE Alu -7 305 2 900 263 148 23 chr1 35509545 35509795 -246683869 + L2 LINE L2 994 1324 -1990 246 276 21 97 chr1 35509823 35509968 -246683696 + MIR SINE MIR 119 252 -10 435 315 34 14 chr1 35510039 35510185 -246683479 - MIR SINE MIR -112 150 2 2312 70 7 0 chr1 35510594 35510892 -246682772 + AluY SINE Alu 1 300 -11 186 311 0 0 chr1 35511431 35511476 -246682188 - MIR SINE MIR -82 126 82 581 236 62 14 chr1 35511554 35511698 -246681966 + MIR SINE MIR 4 154 -108 269 91 303 0 chr1 35511766 35511832 -246681832 - HsTC2 DNA Tc2 -1811 87 2 2210 88 0 16 chr1 35512572 35512877 -246680787 + AluSx SINE Alu 1 300 -12 249 316 37 44 chr1 35513013 35513149 -246680515 + MIR SINE MIR 16 150 -112 349 268 115 32 chr1 35513302 35513459 -246680205 - MER5A DNA MER1_type 0 189 20 252 343 170 18 chr1 35514754 35515200 -246678464 + L2 LINE L2 1801 2314 -1000 964 181 18 0 chr1 35515321 35515492 -246678172 - AluJo SINE Alu -17 295 122 290 316 71 25 chr1 35515504 35515700 -246677964 + L2 LINE L2 2554 2758 -556 271 319 21 97 chr1 35516008 35516089 -246677575 + L2 LINE L2 2949 3035 -237 2088 95 0 3 chr1 35516089 35516403 -246677261 + AluSx SINE Alu 3 315 0 271 319 21 97 chr1 35516403 35516649 -246677015 + L2 LINE L2 3035 3252 -20 2290 95 0 0 chr1 35517670 35517974 -246675690 + AluSx SINE Alu 1 304 -8 1275 161 37 0 chr1 35517999 35518217 -246675447 + AluJb SINE Alu 85 310 -2 1754 160 6 28 chr1 35518304 35518623 -246675041 + AluJo SINE Alu 1 312 0 270 301 99 38 chr1 35518706 35518888 -246674776 + L1ME4a LINE L1 5634 5804 -317 1617 162 19 42 chr1 35518888 35519197 -246674467 + AluJb SINE Alu 1 302 -10 270 301 99 38 chr1 35519197 35519459 -246674205 + L1ME4a LINE L1 5804 6105 -16 596 274 142 9 chr1 35520057 35520269 -246673395 + MIR SINE MIR 9 248 -14 212 261 15 15 chr1 35520524 35520589 -246673075 + L2 LINE L2 3248 3312 -1 818 141 101 7 chr1 35521019 35521168 -246672496 + L1PA16 LINE L1 6003 6165 -1 1929 147 0 0 chr1 35521170 35521462 -246672202 + AluJb SINE Alu 1 292 -20 230 308 194 4 chr1 35521487 35521714 -246671950 + L1ME4a LINE L1 5538 5807 -314 2330 66 3 3 chr1 35521763 35522066 -246671598 + AluY SINE Alu 1 303 -8 240 252 16 79 chr1 35522104 35522231 -246671433 + L1ME4a LINE L1 5965 6083 -38 332 260 96 10 chr1 35522840 35522944 -246670720 + MIR3 SINE MIR 58 170 -38 2383 59 3 0 chr1 35523066 35523356 -246670308 - AluSp SINE Alu -12 301 11 27 29 0 0 chr1 35524078 35524112 -246669552 + AT_rich Low_complexity Low_complexity 1 34 0 468 323 90 73 chr1 35524146 35524668 -246668996 + L2 LINE L2 2546 3093 -179 2162 70 0 0 chr1 35524668 35524941 -246668723 - AluY SINE Alu 0 311 39 468 323 90 73 chr1 35524941 35525121 -246668543 + L2 LINE L2 3093 3268 -4 1830 152 27 3 chr1 35525396 35525510 -246668154 + AluJb SINE Alu 1 111 -201 252 0 0 0 chr1 35525510 35525538 -246668126 + (CA)n Simple_repeat Simple_repeat 1 28 0 1830 152 27 3 chr1 35525538 35525719 -246667945 + AluJb SINE Alu 111 303 -9 852 358 100 22 chr1 35525801 35526354 -246667310 - L2 LINE L2 -459 2855 2346 1797 186 0 0 chr1 35526354 35526650 -246667014 + AluJo SINE Alu 1 296 -16 852 358 100 22 chr1 35526650 35527047 -246666617 - L2 LINE L2 -968 2346 1831 848 195 24 0 chr1 35527605 35527774 -246665890 - MIR SINE MIR 0 262 90 2167 108 10 0 chr1 35527775 35528081 -246665583 + AluSx SINE Alu 1 309 -3 2087 125 0 0 chr1 35528509 35528804 -246664860 + AluSx SINE Alu 3 297 -15 377 277 67 46 chr1 35529248 35529443 -246664221 + L2 LINE L2 3109 3307 -6 1026 212 83 152 chr1 35530850 35531166 -246662498 + L2 LINE L2 1531 1867 -1447 231 59 39 20 chr1 35531166 35531217 -246662447 + (TTTTA)n Simple_repeat Simple_repeat 3 54 0 1026 212 83 152 chr1 35531217 35531334 -246662330 + L2 LINE L2 1867 1991 -1323 2135 116 0 0 chr1 35531334 35531637 -246662027 - AluSx SINE Alu -9 303 1 1026 212 83 152 chr1 35531637 35531924 -246661740 + L2 LINE L2 1991 2202 -1112 2071 123 3 0 chr1 35531925 35532227 -246661437 - AluSx SINE Alu -9 303 1 1169 136 9 47 chr1 35532229 35532269 -246661395 - AluJo SINE Alu -15 297 257 2207 121 45 28 chr1 35532269 35532625 -246661039 - THE1B LTR MaLR -2 362 1 1169 136 9 47 chr1 35532625 35532797 -246660867 - AluJo SINE Alu -55 257 93 714 150 26 0 chr1 35532807 35532920 -246660744 - FLAM_C SINE Alu -17 126 11 1769 257 67 10 chr1 35532923 35533418 -246660246 + L2 LINE L2 2192 2714 -600 759 126 89 7 chr1 35533419 35533554 -246660110 + L1M3 LINE L1 5542 5687 -496 1070 126 0 0 chr1 35533561 35533735 -246659929 - AluSp SINE Alu 0 307 134 1963 130 14 3 chr1 35533735 35534028 -246659636 - AluSq SINE Alu -17 296 1 449 209 23 0 chr1 35534042 35534128 -246659536 + AluJb SINE Alu 210 297 -15 249 159 0 0 chr1 35534129 35534173 -246659491 + (TATATG)n Simple_repeat Simple_repeat 2 45 0 1353 264 107 18 chr1 35534173 35534722 -246658942 + L2 LINE L2 2705 3312 -1 258 258 0 15 chr1 35535010 35535076 -246658588 - MIR SINE MIR -78 184 120 718 170 36 0 chr1 35535076 35535188 -246658476 + FLAM_C SINE Alu 3 118 -25 2115 95 7 0 chr1 35535203 35535487 -246658177 - AluSx SINE Alu -26 286 1 414 278 0 35 chr1 35535489 35535604 -246658060 - MIR SINE MIR -111 151 41 1758 166 3 7 chr1 35535895 35536197 -246657467 - AluJo SINE Alu -11 301 1 224 253 189 0 chr1 35536197 35536292 -246657372 + MIR SINE MIR 122 234 -28 239 340 31 41 chr1 35536298 35536395 -246657269 + L2 LINE L2 3172 3267 -5 239 247 247 31 chr1 35536405 35536502 -246657162 + MIR SINE MIR 20 137 -71 255 239 0 0 chr1 35536966 35537012 -246656652 - MER45 DNA AcHobo -1 1580 1535 1117 140 0 0 chr1 35537109 35537288 -246656376 + AluJb SINE Alu 134 312 0 384 143 26 0 chr1 35537290 35537367 -246656297 - MER63B DNA MER1_type -57 378 300 861 220 0 0 chr1 35537368 35537545 -246656119 + FRAM SINE Alu 1 176 0 288 197 0 0 chr1 35537545 35537611 -246656053 - MER63B DNA MER1_type -147 288 223 953 212 30 35 chr1 35538909 35538978 -246654686 - MER63B DNA MER1_type -827 235 167 2212 90 0 7 chr1 35538978 35539277 -246654387 - AluSq SINE Alu -16 297 1 953 212 30 35 chr1 35539277 35539438 -246654226 - MER63B DNA MER1_type -895 167 6 27 49 0 0 chr1 35539709 35539750 -246653914 + AT_rich Low_complexity Low_complexity 1 41 0 1012 70 0 0 chr1 35539750 35539878 -246653786 - AluSp/q SINE Alu -26 287 160 1715 149 11 0 chr1 35539930 35540205 -246653459 - AluJb SINE Alu -26 286 9 3078 280 82 52 chr1 35540800 35541105 -246652559 - ERVL LTR ERVL -422 5342 5047 2634 13 0 3 chr1 35541105 35541405 -246652259 + AluYa5 SINE Alu 1 299 -12 3078 280 82 52 chr1 35541405 35541635 -246652029 - ERVL LTR ERVL -717 5047 4825 1620 142 49 17 chr1 35541635 35541923 -246651741 + AluJb SINE Alu 1 297 -15 3078 280 82 52 chr1 35541923 35542920 -246650744 - ERVL LTR ERVL -939 4825 3764 1778 149 3 7 chr1 35543099 35543394 -246650270 - AluSx SINE Alu -14 298 5 566 249 203 0 chr1 35543679 35543876 -246649788 - ERVL LTR ERVL -2164 3600 3364 366 287 59 59 chr1 35544029 35544172 -246649492 - ERVL LTR ERVL -2346 3308 3163 2186 97 3 3 chr1 35544172 35544470 -246649194 - AluSp SINE Alu -15 298 1 366 287 59 59 chr1 35544470 35544580 -246649084 - ERVL LTR ERVL -2490 3164 3055 811 165 0 0 chr1 35544606 35544733 -246648931 + AluSq/x SINE Alu 1 127 -185 26 0 0 0 chr1 35544737 35544763 -246648901 + AT_rich Low_complexity Low_complexity 1 26 0 746 325 113 3 chr1 35544788 35545071 -246648593 - ERVL LTR ERVL -2725 3039 2726 237 158 18 35 chr1 35545132 35545189 -246648475 + MLT1J LTR MaLR 100 155 -356 * 303 287 11 23 chr1 35545142 35545229 -246648435 + LTR67 LTR ERVL 114 199 -358 772 142 149 27 chr1 35545424 35545572 -246648092 - AluSg/x SINE Alu -12 298 133 2126 126 0 3 chr1 35545591 35545900 -246647764 - AluSx SINE Alu -4 308 1 726 301 88 0 chr1 35545930 35546179 -246647485 - ERVL LTR ERVL -3172 2592 2322 30 0 0 0 chr1 35546179 35546209 -246647455 + AT_rich Low_complexity Low_complexity 1 30 0 1956 150 0 7 chr1 35546290 35546590 -246647074 - AluSx SINE Alu -14 298 1 1867 142 20 0 chr1 35546590 35546885 -246646779 - AluSx SINE Alu -10 302 1 305 302 52 10 chr1 35547223 35547319 -246646345 + LTR33A LTR ERVL 59 158 -365 301 243 117 29 chr1 35547563 35547666 -246645998 - ERVL LTR ERVL -3692 2072 1961 1986 134 0 3 chr1 35547903 35548202 -246645462 + AluSx SINE Alu 1 298 -14 1934 141 0 14 chr1 35548217 35548514 -246645150 + AluJb SINE Alu 5 297 -15 3525 131 52 49 chr1 35548643 35549253 -246644411 + LTR9 LTR ERV1 1 612 0 711 148 19 0 chr1 35549256 35549364 -246644300 + HUERS-P3 LTR ERV1 4 113 -8806 29811 156 36 36 chr1 35549366 35551233 -246642431 + HUERS-P3 LTR ERV1 266 2133 -5421 2125 125 0 3 chr1 35551233 35551545 -246642119 - AluSq SINE Alu -2 311 1 29811 156 36 36 chr1 35551545 35552179 -246641485 + HUERS-P3 LTR ERV1 2133 2766 -4788 2315 71 0 29 chr1 35552179 35552487 -246641177 - AluY SINE Alu -12 299 1 29811 156 36 36 chr1 35552487 35554948 -246638716 + HUERS-P3 LTR ERV1 2766 5228 -2326 2350 82 0 0 chr1 35554948 35555252 -246638412 - AluY SINE Alu -6 305 2 2196 101 0 7 chr1 35555254 35555561 -246638103 - AluSp SINE Alu -8 305 1 29811 156 36 36 chr1 35555561 35557390 -246636274 + HUERS-P3 LTR ERV1 5229 7084 -470 391 125 18 0 chr1 35557611 35557667 -246635997 + HUERS-P3 LTR ERV1 8059 8115 -804 2421 61 3 0 chr1 35558098 35558395 -246635269 + AluSp SINE Alu 2 299 -14 2024 134 0 0 chr1 35558625 35558930 -246634734 - AluSx SINE Alu -7 305 1 1805 178 118 67 chr1 35559407 35559824 -246633840 - LTR21B LTR ERV1 0 438 1 2028 87 13 55 chr1 35561368 35561679 -246631985 - AluSg SINE Alu -12 298 1 324 0 0 0 chr1 35563041 35563077 -246630587 + (TGG)n Simple_repeat Simple_repeat 3 38 0 254 304 116 0 chr1 35563745 35563857 -246629807 + MIR SINE MIR 137 261 -1 5354 128 52 0 chr1 35563868 35564650 -246629014 + HUERS-P3 LTR ERV1 8096 8918 -1 3649 146 14 56 chr1 35564650 35564777 -246628887 + LTR9 LTR ERV1 1 132 -480 2162 105 0 0 chr1 35564777 35565071 -246628593 - AluSx SINE Alu -18 294 1 3649 146 14 56 chr1 35565071 35565582 -246628082 + LTR9 LTR ERV1 132 612 0 180 0 0 0 chr1 35566339 35566359 -246627305 + (TTTC)n Simple_repeat Simple_repeat 2 21 0 2219 88 0 7 chr1 35566361 35566656 -246627008 - AluY SINE Alu -18 293 1 888 187 0 0 chr1 35566761 35566911 -246626753 + AluJo SINE Alu 1 150 -162 315 301 12 0 chr1 35567022 35567105 -246626559 + L1M4 LINE L1 3674 3757 -2389 1740 166 7 0 chr1 35568009 35568299 -246625365 - AluJb SINE Alu -20 292 1 2056 156 0 3 chr1 35568326 35568646 -246625018 + 7SLRNA srpRNA srpRNA 2 320 0 3900 127 79 22 chr1 35569068 35569968 -246623696 + MER11A LTR ERVK 152 1266 0 2617 93 31 6 chr1 35569980 35570335 -246623329 - THE1B LTR MaLR 0 364 1 1903 144 0 43 chr1 35570625 35570951 -246622713 - AluSx SINE Alu 0 312 1 1704 137 16 42 chr1 35571322 35571494 -246622170 - AluSx SINE Alu -14 298 136 1920 127 13 7 chr1 35571494 35571801 -246621863 - AluSx SINE Alu -3 309 1 1704 137 16 42 chr1 35571801 35571934 -246621730 - AluSx SINE Alu -176 136 1 438 272 27 41 chr1 35573263 35573410 -246620254 + L2 LINE L2 2709 2853 -461 783 182 0 0 chr1 35573411 35573532 -246620132 - MER45A DNA AcHobo -2 176 56 1137 206 8 35 chr1 35573837 35573954 -246619710 - L1MB5 LINE L1 0 6174 6055 1810 170 0 7 chr1 35573954 35574260 -246619404 - AluSx SINE Alu -8 304 1 1137 206 8 35 chr1 35574260 35574399 -246619265 - L1MB5 LINE L1 -119 6055 5925 1180 167 5 0 chr1 35574400 35574598 -246619066 + MLT2B1 LTR ERVL 1 199 -321 2911 78 90 5 chr1 35574620 35575033 -246618631 + LTR7 LTR ERV1 1 448 -2 9960 90 33 18 chr1 35575035 35576482 -246617182 + HERVH LTR ERV1 1 1469 -6244 2090 97 3 32 chr1 35576647 35576955 -246616709 - AluSx SINE Alu -13 299 1 445 315 150 5 chr1 35577007 35577207 -246616457 + MIR SINE MIR 3 231 -31 1529 136 62 0 chr1 35577301 35577544 -246616120 - AluSx SINE Alu -26 286 29 2414 62 0 0 chr1 35577619 35577926 -246615738 + AluY SINE Alu 1 307 -4 300 158 0 0 chr1 35578426 35578483 -246615181 + (CGG)n Simple_repeat Simple_repeat 2 58 0 702 212 0 0 chr1 35579085 35579315 -246614349 + (CAT)n Simple_repeat Simple_repeat 1 230 0 712 194 6 6 chr1 35579344 35579524 -246614140 + (CAT)n Simple_repeat Simple_repeat 1 180 0 209 262 0 0 chr1 35579545 35579587 -246614077 - L2 LINE L2 -11 3261 3220 516 228 23 42 chr1 35579641 35579803 -246613861 + MIR SINE MIR 35 192 -63 252 0 0 0 chr1 35580006 35580034 -246613630 + (ATTG)n Simple_repeat Simple_repeat 4 31 0 2009 109 0 11 chr1 35580034 35580317 -246613347 - AluSx SINE Alu -32 280 1 1190 115 0 0 chr1 35580560 35580734 -246612930 + AluSg/x SINE Alu 137 310 -2 1782 166 0 26 chr1 35580913 35581221 -246612443 - AluJo SINE Alu -12 300 1 2155 112 0 0 chr1 35581247 35581551 -246612113 - AluSx SINE Alu -8 304 1 1636 143 21 96 chr1 35581625 35581960 -246611704 + AluJb SINE Alu 1 310 -2 193 359 26 0 chr1 35582158 35582236 -246611428 - MIR SINE MIR -75 133 54 2179 93 6 13 chr1 35582699 35583012 -246610652 + AluSx SINE Alu 1 311 -1 2056 133 0 0 chr1 35583216 35583517 -246610147 - AluSx SINE Alu -11 301 1 946 146 0 0 chr1 35583520 35583698 -246609966 - AluJb SINE Alu 0 315 138 358 318 48 37 chr1 35583848 35584037 -246609627 + L2 LINE L2 2553 2743 -571 1197 98 0 0 chr1 35584042 35584206 -246609458 + AluSg/x SINE Alu 137 300 -12 730 137 0 24 chr1 35584240 35584364 -246609300 + L2 LINE L2 3193 3313 0 338 368 16 28 chr1 35584401 35584583 -246609081 + L2 LINE L2 2883 3062 -210 1557 147 13 76 chr1 35585018 35585174 -246608490 + AluJb SINE Alu 1 129 -183 2053 118 3 3 chr1 35585174 35585470 -246608194 + AluSq SINE Alu 1 296 -17 1557 147 13 76 chr1 35585470 35585627 -246608037 + AluJb SINE Alu 129 294 -18 2176 112 0 0 chr1 35585629 35585923 -246607741 + AluSx SINE Alu 1 294 -18 941 237 50 0 chr1 35586323 35586521 -246607143 - MIR SINE MIR -4 258 51 252 0 0 0 chr1 35586566 35586594 -246607070 + (ATATG)n Simple_repeat Simple_repeat 5 32 0 2161 107 7 0 chr1 35586642 35586950 -246606714 + AluSx SINE Alu 1 310 -2 305 183 0 113 chr1 35586972 35587043 -246606621 - MER2 DNA MER2_type -1 344 282 546 217 0 9 chr1 35587045 35587151 -246606513 - MER8 DNA MER2_type -133 106 2 1171 130 142 170 chr1 35587488 35587889 -246605775 - MLT1B LTR MaLR 0 390 1 273 211 110 46 chr1 35587939 35588048 -246605616 - MER112 DNA MER1_type -139 121 6 23 0 0 0 chr1 35589020 35589043 -246604621 + AT_rich Low_complexity Low_complexity 1 23 0 2184 83 83 0 chr1 35589044 35589358 -246604306 - L1PA14 LINE L1 -17 6144 5805 759 175 65 26 chr1 35589378 35589532 -246604132 - AluJb SINE Alu -7 305 146 1352 122 0 0 chr1 35589632 35589821 -246603843 - AluSc SINE Alu -120 189 1 589 215 8 0 chr1 35589821 35589951 -246603713 - L1M LINE L1 -751 5423 5293 1719 177 198 32 chr1 35589964 35590362 -246603302 - LTR10A LTR ERV1 -61 548 59 2253 76 3 3 chr1 35590362 35590663 -246603001 + AluY SINE Alu 1 301 -10 1719 177 198 32 chr1 35590663 35590734 -246602930 - LTR10A LTR ERV1 -550 59 1 11793 159 13 19 chr1 35590737 35593894 -246599770 - Harlequin LTR ERV1 -4 6645 1807 295 169 197 14 chr1 35593897 35593968 -246599696 + LTR8 LTR ERV1 174 257 -434 3638 74 0 35 chr1 35593968 35594600 -246599064 - Harlequin LTR ERV1 -5178 1718 1063 1297 88 0 11 chr1 35594607 35594788 -246598876 - AluY SINE Alu 0 311 133 1880 97 42 10 chr1 35594788 35595077 -246598587 - AluSc SINE Alu -11 298 1 1715 142 44 9 chr1 35595077 35595416 -246598248 - Harlequin LTR ERV1 -5884 1012 716 944 219 73 18 chr1 35595790 35595846 -246597818 - Harlequin LTR ERV1 -6360 289 238 6264 128 30 21 chr1 35595846 35596844 -246596820 + LTR13 LTR ERVK 1 1007 0 944 219 73 18 chr1 35596844 35597061 -246596603 - Harlequin LTR ERV1 -6411 238 1 1896 182 153 35 chr1 35597070 35597560 -246596104 - LTR10A LTR ERV1 -61 548 1 1396 164 0 0 chr1 35597580 35597818 -246595846 - AluJo SINE Alu -7 305 68 2235 101 16 0 chr1 35597818 35598126 -246595538 + AluSq SINE Alu 1 313 0 438 155 14 0 chr1 35598250 35598321 -246595343 - AluJo SINE Alu -239 73 2 858 150 89 77 chr1 35598322 35598568 -246595096 - L1M4 LINE L1 -858 5288 5040 201 213 0 0 chr1 35598578 35598625 -246595039 + CT-rich Low_complexity Low_complexity 2 48 0 714 163 0 23 chr1 35598635 35598764 -246594900 - FLAM_C SINE Alu 0 143 18 244 184 0 20 chr1 35598771 35598820 -246594844 - L1MC/D LINE L1 -634 5710 5663 991 98 14 0 chr1 35598830 35598973 -246594691 - AluSg/x SINE Alu -33 279 135 1765 162 3 0 chr1 35598976 35599287 -246594377 - AluSx SINE Alu 0 312 1 572 147 0 11 chr1 35599287 35599382 -246594282 - L1MC/D LINE L1 -514 5670 5577 538 185 37 0 chr1 35599385 35599493 -246594171 - LTR47A LTR ERVL -283 169 58 1288 183 35 7 chr1 35599507 35599796 -246593868 - L1M4 LINE L1 -1092 5054 4758 261 0 0 0 chr1 35599813 35599842 -246593822 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1887 95 29 4 chr1 35599844 35600118 -246593546 - AluSq SINE Alu -29 284 4 2280 55 7 3 chr1 35600337 35600628 -246593036 + AluY SINE Alu 4 295 -16 691 212 8 0 chr1 35600718 35600850 -246592814 - FLAM_A SINE Alu 0 133 1 751 240 221 44 chr1 35600997 35601052 -246592612 - LTR50 LTR ERVL -2 793 749 2121 118 0 0 chr1 35601052 35601358 -246592306 - AluSx SINE Alu -6 306 1 751 240 221 44 chr1 35601358 35601388 -246592276 - LTR50 LTR ERVL -46 749 726 2157 84 0 27 chr1 35601388 35601687 -246591977 - AluY SINE Alu -20 291 1 751 240 221 44 chr1 35601687 35601846 -246591818 - LTR50 LTR ERVL -69 726 596 706 189 25 77 chr1 35601846 35601909 -246591755 - MER53 DNA DNA -3 186 121 1970 129 26 0 chr1 35601909 35602211 -246591453 - AluSq SINE Alu -3 310 1 706 189 25 77 chr1 35602211 35602343 -246591321 - MER53 DNA DNA -68 121 1 751 240 221 44 chr1 35602343 35602689 -246590975 - LTR50 LTR ERVL -199 596 1 1603 176 10 0 chr1 35602825 35603121 -246590543 + AluJo SINE Alu 1 299 -13 2363 68 0 0 chr1 35603146 35603440 -246590224 - AluY SINE Alu -17 294 1 1955 163 11 68 chr1 35603787 35604156 -246589508 + MER66B LTR ERV1 1 348 -138 489 207 11 0 chr1 35604256 35604343 -246589321 - AluJ/FLAM SINE Alu -223 89 2 741 216 162 19 chr1 35604381 35604457 -246589207 - MLT2B1 LTR ERVL -2 518 454 3923 160 64 13 chr1 35604457 35605149 -246588515 + LTR8A LTR ERV1 1 727 0 741 216 162 19 chr1 35605149 35605306 -246588358 - MLT2B1 LTR ERVL -66 454 242 2311 80 3 0 chr1 35605306 35605606 -246588058 + AluSp SINE Alu 3 303 -10 741 216 162 19 chr1 35605606 35605630 -246588034 - MLT2B1 LTR ERVL -278 242 223 1027 196 88 0 chr1 35605655 35605859 -246587805 + AluJo SINE Alu 10 231 -81 3104 90 8 153 chr1 35605861 35606577 -246587087 - MER4B LTR ERV1 0 779 1 416 158 0 49 chr1 35606577 35606659 -246587005 + AluJo SINE Alu 230 307 -5 2791 75 122 5 chr1 35606669 35607070 -246586594 - LTR7 LTR ERV1 -2 448 1 2375 98 53 13 chr1 35607070 35607447 -246586217 - HERVH LTR ERV1 0 7713 7322 1513 101 18 14 chr1 35607445 35607664 -246586000 - HERVH LTR ERV1 -1894 5819 5600 * 4510 134 1 1 chr1 35607665 35608327 -246585337 - HERVH LTR ERV1 -2564 5149 4488 3443 109 4 6 chr1 35608329 35608832 -246584832 - HERVH LTR ERV1 -3720 3993 3492 930 128 20 0 chr1 35608822 35608970 -246584694 - HERVH LTR ERV1 -4423 3290 3140 * 2396 144 9 16 chr1 35608964 35609394 -246584270 - HERVH LTR ERV1 -4726 2987 2561 599 130 11 11 chr1 35609395 35609487 -246584177 - AluSg/x SINE Alu -144 166 75 616 296 61 44 chr1 35609545 35609839 -246583825 + MLT1K LTR MaLR 27 325 -263 1705 150 0 46 chr1 35609985 35610311 -246583353 - AluSx SINE Alu -1 311 1 232 227 0 0 chr1 35610315 35610359 -246583305 + MLT1L LTR MaLR 569 612 -3 262 359 45 51 chr1 35610367 35610523 -246583141 + L2 LINE L2 3098 3252 -20 2225 80 0 35 chr1 35610588 35610901 -246582763 + AluSx SINE Alu 1 302 -10 1441 148 4 49 chr1 35610974 35611238 -246582426 - AluJb SINE Alu -17 295 44 861 134 40 20 chr1 35612095 35612244 -246581420 - FRAM SINE Alu -25 151 1 376 272 179 23 chr1 35612244 35612417 -246581247 - MIR SINE MIR -56 206 7 1147 163 43 8 chr1 35613832 35613870 -246579794 + L1M4 LINE L1 5165 5200 -978 2279 98 0 0 chr1 35613870 35614175 -246579489 + AluSc SINE Alu 1 305 -4 1147 163 43 8 chr1 35614175 35614441 -246579223 + L1M4 LINE L1 5200 5474 -704 1738 127 0 98 chr1 35614588 35614934 -246578730 + AluSx SINE Alu 1 312 0 1213 73 0 12 chr1 35615025 35615189 -246578475 + L1PA5 LINE L1 5993 6154 0 764 163 0 59 chr1 35615263 35615398 -246578266 + FLAM_A SINE Alu 1 127 -6 1717 160 3 14 chr1 35615412 35615706 -246577958 + AluJo SINE Alu 11 301 -11 405 286 90 51 chr1 35615741 35615919 -246577745 - L2 LINE L2 -50 3222 3038 2994 98 26 5 chr1 35616025 35616442 -246577222 + MSTA LTR MaLR 3 428 0 2669 180 4 32 chr1 35617762 35618261 -246575403 - MER66B LTR ERV1 0 486 2 495 268 8 0 chr1 35618731 35618854 -246574810 + MER5C DNA MER1_type 1 124 -200 180 222 206 32 chr1 35618968 35619031 -246574633 + MER5C DNA MER1_type 248 321 -3 1837 159 13 0 chr1 35619039 35619347 -246574317 + AluSx SINE Alu 1 312 0 2183 77 11 0 chr1 35619435 35619721 -246573943 + AluSp SINE Alu 1 289 -24 841 136 8 0 chr1 35620033 35620158 -246573506 + MER20 DNA MER1_type 94 219 0 2162 95 0 3 chr1 35620246 35620576 -246573088 - AluSx SINE Alu 0 329 1 2493 65 0 0 chr1 35622059 35622368 -246571296 - AluY SINE Alu -2 309 1 2213 80 27 0 chr1 35623776 35624075 -246569589 - AluSq SINE Alu -6 307 1 261 277 181 0 chr1 35624186 35624280 -246569384 - L2 LINE L2 -6 3307 3197 2045 89 14 7 chr1 35624623 35624916 -246568748 - AluSc SINE Alu -10 299 5 1560 91 228 0 chr1 35624958 35625199 -246568465 + AluSx SINE Alu 1 296 -6 22 56 0 0 chr1 35625218 35625254 -246568410 + AT_rich Low_complexity Low_complexity 1 36 0 1977 110 65 3 chr1 35625400 35625692 -246567972 + AluSq SINE Alu 2 311 -2 273 211 53 13 chr1 35625711 35625787 -246567877 - MIR3 SINE MIR 0 208 130 26 50 0 0 chr1 35626206 35626246 -246567418 + AT_rich Low_complexity Low_complexity 1 40 0 2012 136 10 0 chr1 35626275 35626576 -246567088 - AluSx SINE Alu -8 304 1 1044 158 0 0 chr1 35627213 35627371 -246566293 + FRAM SINE Alu 1 155 -21 24 0 0 0 chr1 35628231 35628255 -246565409 + AT_rich Low_complexity Low_complexity 1 24 0 822 154 99 33 chr1 35628542 35628724 -246564940 + MER58A DNA MER1_type 27 220 -4 22 0 0 0 chr1 35629044 35629066 -246564598 + AT_rich Low_complexity Low_complexity 1 22 0 307 222 0 0 chr1 35629360 35629414 -246564250 + MER5A DNA MER1_type 1 54 -135 195 107 0 0 chr1 35629414 35629442 -246564222 + MER5A DNA MER1_type 156 183 -6 1854 145 3 3 chr1 35629444 35629741 -246563923 + AluJb SINE Alu 1 297 -15 2211 100 0 7 chr1 35629741 35630050 -246563614 + AluSx SINE Alu 1 307 -5 2045 137 0 0 chr1 35630063 35630370 -246563294 - AluSx SINE Alu -5 307 1 1908 163 51 108 chr1 35630966 35631246 -246562418 + L1MB5 LINE L1 5660 5896 -278 2326 62 7 3 chr1 35631246 35631550 -246562114 + AluY SINE Alu 1 305 -6 1908 163 51 108 chr1 35631550 35631814 -246561850 + L1MB5 LINE L1 5896 6173 -1 22 0 0 0 chr1 35631968 35631990 -246561674 + GC_rich Low_complexity Low_complexity 1 22 0 25 95 0 0 chr1 35632138 35632212 -246561452 + GC_rich Low_complexity Low_complexity 1 74 0 22 0 0 0 chr1 35632260 35632282 -246561382 + GC_rich Low_complexity Low_complexity 1 22 0 233 109 22 0 chr1 35632310 35632356 -246561308 + (CGG)n Simple_repeat Simple_repeat 2 48 0 959 230 55 48 chr1 35632443 35632752 -246560912 - L1MC4a LINE L1 -339 7469 7159 872 176 0 0 chr1 35632761 35632909 -246560755 - AluJb SINE Alu -19 293 146 363 185 0 4 chr1 35632910 35632990 -246560674 - Alu SINE Alu -249 53 1 434 169 113 40 chr1 35633004 35633128 -246560536 - FLAM_A SINE Alu 0 133 1 1620 206 30 24 chr1 35633131 35633154 -246560510 - L1MC4 LINE L1 -861 7032 7011 2151 117 0 0 chr1 35633154 35633462 -246560202 - AluSx SINE Alu -4 308 1 1620 206 30 24 chr1 35633462 35633834 -246559830 - L1MC4 LINE L1 -882 7011 6518 365 209 112 37 chr1 35633914 35633988 -246559676 - L1ME4a LINE L1 -49 6072 6005 2301 77 0 0 chr1 35633988 35634287 -246559377 + AluY SINE Alu 1 299 -12 365 209 112 37 chr1 35634287 35634399 -246559265 - L1ME4a LINE L1 -116 6005 5872 774 182 40 17 chr1 35634409 35634585 -246559079 + MER58 DNA MER1_type 20 199 -2221 766 212 123 24 chr1 35634629 35634922 -246558742 + MLT1G LTR MaLR 269 590 0 913 117 0 0 chr1 35634959 35635087 -246558577 + AluSq/x SINE Alu 18 145 -168 2392 64 0 0 chr1 35635185 35635481 -246558183 + AluY SINE Alu 1 296 -15 266 73 0 0 chr1 35635662 35635703 -246557961 - Alu SINE Alu -3 299 259 865 150 0 0 chr1 35635882 35636009 -246557655 + FLAM_C SINE Alu 2 128 -5 2432 59 7 0 chr1 35636030 35636334 -246557330 + AluY SINE Alu 1 306 -5 2575 91 8 39 chr1 35636347 35636733 -246556931 + THE1C LTR MaLR 1 374 -1 308 83 0 0 chr1 35636741 35636789 -246556875 + Alu SINE Alu 254 301 -1 842 189 115 77 chr1 35636789 35637049 -246556615 + L1ME1 LINE L1 5321 5590 -576 222 62 0 0 chr1 35637056 35637088 -246556576 + (TGAA)n Simple_repeat Simple_repeat 4 35 0 1423 191 11 7 chr1 35637088 35637365 -246556299 - AluJb SINE Alu -34 278 1 1225 183 154 19 chr1 35637366 35637871 -246555793 + L1ME1 LINE L1 5584 5906 -260 1210 194 17 24 chr1 35637872 35638163 -246555501 - MER33 DNA MER1_type -46 278 1 2238 100 0 0 chr1 35638253 35638553 -246555111 + AluSq SINE Alu 1 300 -13 2107 111 20 0 chr1 35638777 35639074 -246554590 - AluSq SINE Alu -10 303 1 1989 141 3 3 chr1 35639232 35639544 -246554120 - AluSx SINE Alu 0 312 1 202 341 47 71 chr1 35639577 35639747 -246553917 - L2 LINE L2 -56 3216 3051 2339 81 0 0 chr1 35639807 35640103 -246553561 + AluSc SINE Alu 1 296 -13 1138 139 0 6 chr1 35640839 35641011 -246552653 - AluSp SINE Alu -9 304 134 1416 96 0 5 chr1 35641011 35641199 -246552465 - AluSx SINE Alu -125 187 1 219 292 0 0 chr1 35641315 35641363 -246552301 - L2 LINE L2 -16 3297 3250 202 232 18 18 chr1 35641555 35641611 -246552053 + L2 LINE L2 3216 3271 -1 251 270 139 9 chr1 35641839 35641954 -246551710 + LTR16A LTR ERVL 321 450 0 2416 54 0 3 chr1 35642077 35642372 -246551292 - AluY SINE Alu -17 294 1 209 56 0 28 chr1 35642425 35642461 -246551203 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 936 75 0 0 chr1 35642461 35642581 -246551083 - AluY SINE Alu -191 120 1 653 188 8 17 chr1 35642622 35642739 -246550925 + FLAM_A SINE Alu 1 116 -17 1939 144 7 13 chr1 35642819 35643125 -246550539 + AluSx SINE Alu 1 304 -8 844 293 68 79 chr1 35643128 35643182 -246550482 + L1MC/D LINE L1 4735 4788 -1358 1646 164 134 33 chr1 35643182 35643571 -246550093 + MSTC LTR MaLR 1 428 0 844 293 68 79 chr1 35643571 35643633 -246550031 + L1MC/D LINE L1 4788 4849 -1297 1016 195 0 0 chr1 35643633 35643802 -246549862 - FAM SINE Alu -6 169 1 844 293 68 79 chr1 35643802 35644216 -246549448 + L1MC/D LINE L1 4849 5260 -886 319 279 37 48 chr1 35644218 35644247 -246549417 + L1MC/D LINE L1 5291 5319 -802 2185 103 0 0 chr1 35644247 35644547 -246549117 + AluSx SINE Alu 1 300 -12 186 43 0 0 chr1 35644551 35644574 -246549090 + (CAA)n Simple_repeat Simple_repeat 2 24 0 319 279 37 48 chr1 35644574 35644762 -246548902 + L1MC/D LINE L1 5322 5504 -617 2082 131 0 3 chr1 35644776 35645089 -246548575 - AluSx SINE Alu 0 312 1 2479 181 21 122 chr1 35645104 35645623 -246548041 + L1ME2 LINE L1 5436 6006 -158 2063 110 33 0 chr1 35645623 35645922 -246547742 + AluSx SINE Alu 1 309 -3 2479 181 21 122 chr1 35645922 35646076 -246547588 + L1ME2 LINE L1 6006 6019 -145 1653 158 3 28 chr1 35646076 35646367 -246547297 + AluJb SINE Alu 1 284 -28 2479 181 21 122 chr1 35646367 35646488 -246547176 + L1ME2 LINE L1 6019 6151 -13 2114 117 0 0 chr1 35646659 35646957 -246546707 + AluSx SINE Alu 15 312 0 607 101 0 0 chr1 35647147 35647226 -246546438 + AluJo SINE Alu 2 80 -232 1168 148 23 23 chr1 35647276 35647326 -246546338 + AluJo SINE Alu 85 134 -178 1589 113 124 19 chr1 35647326 35647591 -246546073 + AluSg SINE Alu 1 293 -17 1168 148 23 23 chr1 35647591 35647757 -246545907 + AluJo SINE Alu 133 301 -11 3250 101 25 138 chr1 35647759 35647901 -246545763 - Tigger3b DNA MER2_type -1797 1232 1076 2316 129 18 3 chr1 35647901 35648233 -246545431 + MER1B DNA MER1_type 1 337 0 3250 101 25 138 chr1 35648233 35648338 -246545326 - Tigger3b DNA MER2_type -1953 1076 961 1748 134 18 4 chr1 35648338 35648615 -246545049 - AluSq SINE Alu -32 281 1 3250 101 25 138 chr1 35648615 35648672 -246544992 - Tigger3b DNA MER2_type -2068 961 899 1976 106 0 3 chr1 35648672 35648954 -246544710 + AluSq SINE Alu 1 281 -32 3250 101 25 138 chr1 35648954 35649157 -246544507 - Tigger3b DNA MER2_type -2130 899 675 2049 107 14 0 chr1 35649157 35649447 -246544217 - AluSx SINE Alu -18 294 1 3250 101 25 138 chr1 35649447 35649551 -246544113 - Tigger3b DNA MER2_type -2354 675 561 2271 53 20 0 chr1 35649551 35649850 -246543814 + AluY SINE Alu 1 305 -6 1658 176 20 0 chr1 35649857 35650159 -246543505 + AluJo SINE Alu 1 308 -4 3250 101 25 138 chr1 35650159 35650279 -246543385 - Tigger3b DNA MER2_type -2324 705 573 887 160 0 7 chr1 35650283 35650433 -246543231 - AluJo SINE Alu -163 149 1 2876 141 105 19 chr1 35650435 35650470 -246543194 - Tigger3b DNA MER2_type -2459 569 538 186 71 0 0 chr1 35650470 35650498 -246543166 + (CA)n Simple_repeat Simple_repeat 2 29 0 2876 141 105 19 chr1 35650498 35650760 -246542904 - Tigger3b DNA MER2_type -2490 538 300 2157 99 3 0 chr1 35650760 35651052 -246542612 - AluSg SINE Alu -17 293 1 2876 141 105 19 chr1 35651052 35651277 -246542387 - Tigger3b DNA MER2_type -2728 300 1 1670 158 54 3 chr1 35651448 35651745 -246541919 - AluJb SINE Alu 0 312 1 22 0 0 0 chr1 35651848 35651870 -246541794 + AT_rich Low_complexity Low_complexity 1 22 0 655 246 12 47 chr1 35651954 35652125 -246541539 + LTR41 LTR ERVL 1 165 -608 2303 56 3 7 chr1 35652141 35652445 -246541219 - AluY SINE Alu -8 303 1 1862 104 97 0 chr1 35652448 35652727 -246540937 - AluSq SINE Alu -7 306 1 275 196 6 184 chr1 35652954 35653038 -246540626 + LTR41 LTR ERVL 585 628 -145 1285 167 119 11 chr1 35653038 35653307 -246540357 - AluSg1 SINE Alu -11 298 1 275 196 6 184 chr1 35653307 35653385 -246540279 + LTR41 LTR ERVL 628 718 -55 * 1190 194 73 13 chr1 35653373 35653651 -246540013 + MLT2D LTR ERVL 76 364 -50 2203 88 3 0 chr1 35653652 35653964 -246539700 + AluSq SINE Alu 1 313 0 2163 89 17 0 chr1 35654007 35654300 -246539364 + AluSc SINE Alu 1 298 -11 2016 109 3 7 chr1 35654339 35654622 -246539042 - AluSx SINE Alu -30 282 1 1045 146 35 0 chr1 35654624 35654795 -246538869 - AluSq SINE Alu -6 307 131 252 227 53 0 chr1 35654798 35654873 -246538791 + LTR50 LTR ERVL 715 793 -2 253 268 0 0 chr1 35655051 35655107 -246538557 - L2 LINE L2 -225 3047 2992 2252 100 3 0 chr1 35655112 35655423 -246538241 + AluSx SINE Alu 1 312 0 2109 122 0 0 chr1 35655465 35655768 -246537896 - AluSx SINE Alu -1 311 9 2134 75 48 7 chr1 35655774 35656068 -246537596 - AluSx SINE Alu -6 306 1 1137 119 0 17 chr1 35656110 35656267 -246537397 + AluSq SINE Alu 137 292 -21 622 191 7 0 chr1 35656267 35656403 -246537261 + L1MA4 LINE L1 6160 6296 -4 1137 119 0 17 chr1 35656403 35656421 -246537243 + AluSq SINE Alu 292 309 -4 722 248 64 54 chr1 35656792 35656834 -246536830 - MLT1I LTR MaLR -26 383 343 1536 194 8 79 chr1 35656834 35657111 -246536553 - MER58B DNA MER1_type -2079 341 95 1667 169 7 10 chr1 35657111 35657418 -246536246 + AluJb SINE Alu 1 306 -6 1536 194 8 79 chr1 35657418 35657507 -246536157 - MER58B DNA MER1_type -2325 95 1 722 248 64 54 chr1 35657507 35657823 -246535841 - MLT1I LTR MaLR -66 343 51 347 200 250 10 chr1 35657927 35658027 -246535637 + MER5C DNA MER1_type 1 124 -200 850 137 0 0 chr1 35658179 35658310 -246535354 + AluJo/FLAM SINE Alu 1 131 -181 1679 151 6 35 chr1 35658312 35658455 -246535209 + AluJb SINE Alu 1 147 -165 2254 77 7 0 chr1 35658455 35658752 -246534912 + AluY SINE Alu 1 299 -12 1679 151 6 35 chr1 35658752 35658920 -246534744 + AluJb SINE Alu 147 303 -9 2086 112 0 3 chr1 35659051 35659346 -246534318 + AluSx SINE Alu 1 294 -18 376 338 82 15 chr1 35659374 35659575 -246534089 + L1MDa LINE L1 1267 1789 -4682 * 423 283 80 76 chr1 35659555 35659583 -246534081 + HAL1 LINE L1 1309 1335 -1172 1928 155 0 3 chr1 35659583 35659887 -246533777 + AluJb SINE Alu 1 303 -9 423 283 80 76 chr1 35659887 35659992 -246533672 + HAL1 LINE L1 1335 1438 -1069 1998 98 0 76 chr1 35659992 35660320 -246533344 + AluSq SINE Alu 1 303 -10 423 283 80 76 chr1 35660320 35660422 -246533242 + HAL1 LINE L1 1438 1546 -961 274 330 0 0 chr1 35660523 35660620 -246533044 + HAL1 LINE L1 1570 1666 -841 2226 106 0 0 chr1 35660760 35661072 -246532592 - AluSx SINE Alu 0 312 1 2134 121 0 3 chr1 35661119 35661432 -246532232 + AluSx SINE Alu 1 312 0 2237 115 0 0 chr1 35661505 35661810 -246531854 - AluSq SINE Alu -8 305 1 2415 74 0 0 chr1 35662012 35662323 -246531341 + AluY SINE Alu 1 311 0 2163 95 3 3 chr1 35662413 35662707 -246530957 - AluSg SINE Alu -16 294 1 1695 144 53 7 chr1 35662710 35662995 -246530669 - AluJo SINE Alu -14 298 1 821 160 15 0 chr1 35663122 35663253 -246530411 + AluJo/FLAM SINE Alu 1 133 -169 2065 125 0 0 chr1 35663253 35663558 -246530106 + AluSq SINE Alu 1 305 -8 1994 74 102 0 chr1 35663675 35663959 -246529705 + AluSp SINE Alu 1 313 0 1711 86 4 39 chr1 35664067 35664324 -246529340 + AluSp SINE Alu 58 305 -8 280 301 0 124 chr1 35664391 35664468 -246529196 - MLT1-int LTR MaLR -489 882 797 1621 141 65 31 chr1 35664468 35664758 -246528906 - AluJb SINE Alu -7 305 6 280 301 0 124 chr1 35664758 35664889 -246528775 - MLT1-int LTR MaLR -574 797 700 1150 135 60 10 chr1 35664907 35665107 -246528557 - AluJo SINE Alu -102 210 1 22 0 0 0 chr1 35665178 35665200 -246528464 + AT_rich Low_complexity Low_complexity 1 22 0 869 129 8 8 chr1 35665207 35665339 -246528325 - FLAM_C SINE Alu -11 132 1 761 249 21 5 chr1 35665517 35665706 -246527958 - MLT1-int LTR MaLR -764 607 416 2114 110 0 0 chr1 35665892 35666183 -246527481 - AluSx SINE Alu -19 293 3 311 213 234 0 chr1 35666215 35666309 -246527355 - MLT1-int LTR MaLR -1614 121 6 1678 146 45 3 chr1 35666349 35666636 -246527028 + AluJo SINE Alu 1 299 -13 1621 206 60 23 chr1 35666690 35667190 -246526474 + MLT1G LTR MaLR 10 590 0 481 315 133 30 chr1 35667190 35667398 -246526266 + L2 LINE L2 1759 1944 -1370 1547 195 0 13 chr1 35667398 35667706 -246525958 - AluJo SINE Alu -6 306 3 481 315 133 30 chr1 35667706 35667925 -246525739 + L2 LINE L2 1944 2230 -1084 773 123 0 0 chr1 35667932 35668046 -246525618 - AluSg/x SINE Alu 0 309 196 28 0 0 0 chr1 35668050 35668078 -246525586 + AT_rich Low_complexity Low_complexity 1 28 0 552 289 209 44 chr1 35668078 35668874 -246524790 + L2 LINE L2 2376 3286 -27 2259 91 7 0 chr1 35668890 35669198 -246524466 + AluSg SINE Alu 1 310 0 2174 113 0 0 chr1 35669397 35669707 -246523957 - AluSg SINE Alu 0 310 1 27 49 0 0 chr1 35671013 35671054 -246522610 + GC_rich Low_complexity Low_complexity 1 41 0 26 88 0 0 chr1 35671066 35671134 -246522530 + GC_rich Low_complexity Low_complexity 1 68 0 37 39 0 0 chr1 35671299 35671350 -246522314 + GC_rich Low_complexity Low_complexity 1 51 0 31 58 0 0 chr1 35671477 35671529 -246522135 + GC_rich Low_complexity Low_complexity 1 52 0 205 174 64 156 chr1 35671952 35672061 -246521603 - MIR SINE MIR -51 211 113 677 230 138 30 chr1 35672705 35673018 -246520646 + L2 LINE L2 2720 3057 -256 1154 154 93 125 chr1 35673063 35673439 -246520225 - MLT1A1 LTR MaLR 0 365 2 363 167 0 0 chr1 35673457 35673511 -246520153 + Tigger5 DNA MER2_type 1 54 -2269 586 156 0 0 chr1 35673519 35673609 -246520055 + Tigger5 DNA MER2_type 2234 2323 0 1794 101 10 78 chr1 35673805 35674113 -246519551 + AluSg SINE Alu 1 287 -23 2284 74 0 32 chr1 35674607 35674917 -246518747 - AluSq SINE Alu -13 300 1 1303 201 27 24 chr1 35674917 35675211 -246518453 - L1MB7 LINE L1 -21 6163 5869 2318 72 0 0 chr1 35675215 35675506 -246518158 - AluY SINE Alu -18 293 3 846 195 19 0 chr1 35675508 35675667 -246517997 - AluJb SINE Alu -16 296 135 2250 174 2 29 chr1 35675667 35675706 -246517958 - L1MB7 LINE L1 -312 5872 5833 2197 104 43 43 chr1 35675706 35675948 -246517716 - MER7A DNA MER2_type -2692 346 105 1886 129 4 0 chr1 35675948 35676228 -246517436 + AluSx SINE Alu 1 281 -31 186 43 0 0 chr1 35676232 35676255 -246517409 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2197 104 43 43 chr1 35676255 35676353 -246517311 - MER7A DNA MER2_type -2935 103 3 2250 174 2 29 chr1 35676353 35676728 -246516936 - L1MB7 LINE L1 -351 5833 5469 211 234 0 0 chr1 35676735 35676782 -246516882 + A-rich Low_complexity Low_complexity 1 47 0 701 124 9 0 chr1 35676803 35676908 -246516756 - L1MB7 LINE L1 -711 5469 5364 394 206 61 53 chr1 35676934 35677065 -246516599 - MIR SINE MIR -65 197 66 506 340 20 98 chr1 35677138 35677638 -246516026 + L2 LINE L2 2807 3267 -5 2110 120 0 0 chr1 35677703 35678004 -246515660 + AluSx SINE Alu 10 310 -2 752 202 77 18 chr1 35678016 35678184 -246515480 + AluJb SINE Alu 122 299 -13 1958 146 0 7 chr1 35678434 35678736 -246514928 - AluJb SINE Alu -12 300 1 1042 133 0 46 chr1 35678881 35679054 -246514610 - FRAM SINE Alu -1 165 1 433 125 0 0 chr1 35679116 35679188 -246514476 + Alu SINE Alu 240 311 -1 848 128 0 47 chr1 35679228 35679377 -246514287 + AluJb SINE Alu 171 312 0 2221 106 0 3 chr1 35679384 35679695 -246513969 + AluSg SINE Alu 1 310 0 2090 108 3 0 chr1 35679856 35680153 -246513511 - AluSx SINE Alu -1 311 14 457 232 16 56 chr1 35680273 35680398 -246513266 - MIR SINE MIR 0 262 143 251 125 0 0 chr1 35680398 35680438 -246513226 - MSTA LTR MaLR 0 428 389 1812 138 11 0 chr1 35680443 35680741 -246512923 + AluSg SINE Alu 1 301 0 2147 105 7 0 chr1 35680745 35681040 -246512624 + AluSq SINE Alu 2 298 -15 611 219 7 58 chr1 35681138 35681293 -246512371 + FRAM SINE Alu 23 169 -7 237 264 27 55 chr1 35681462 35681572 -246512092 - MLT2F LTR ERVL -519 144 38 * 250 194 56 56 chr1 35681504 35681576 -246512088 - MLT1J LTR MaLR -341 170 99 860 101 34 0 chr1 35681609 35681728 -246511936 + FLAM_C SINE Alu 2 124 -9 1766 162 6 32 chr1 35681864 35682178 -246511486 + AluJb SINE Alu 1 306 -6 2422 70 7 0 chr1 35682209 35682507 -246511157 + AluSq SINE Alu 1 300 -13 1581 164 90 0 chr1 35682696 35682964 -246510700 + AluJb SINE Alu 1 292 -20 2063 117 21 0 chr1 35682966 35683256 -246510408 + AluSp SINE Alu 2 297 -16 651 214 8 0 chr1 35683278 35683404 -246510260 - FLAM_C SINE Alu -5 128 2 1858 177 7 0 chr1 35683616 35683904 -246509760 + AluJb SINE Alu 3 292 -20 2129 121 0 19 chr1 35683910 35684225 -246509439 + AluSx SINE Alu 1 309 -3 24 77 0 0 chr1 35684298 35684350 -246509314 + AT_rich Low_complexity Low_complexity 1 52 0 201 121 73 65 chr1 35684392 35684516 -246509148 + (TTATA)n Simple_repeat Simple_repeat 2 126 0 2193 125 0 0 chr1 35684597 35684892 -246508772 - AluSx SINE Alu -17 295 1 21 36 0 0 chr1 35684893 35684921 -246508743 + AT_rich Low_complexity Low_complexity 1 28 0 2494 76 3 0 chr1 35685137 35685438 -246508226 + AluSp SINE Alu 1 302 -11 2168 120 7 0 chr1 35685450 35685751 -246507913 + AluSx SINE Alu 1 303 -9 1862 99 80 0 chr1 35685993 35686311 -246507353 - AluSx SINE Alu 0 339 1 348 336 16 8 chr1 35686433 35686558 -246507106 - MIR3 SINE MIR -40 168 43 202 162 0 0 chr1 35686603 35686640 -246507024 + MIR SINE MIR 127 163 -99 2357 73 0 0 chr1 35686640 35686926 -246506738 + AluY SINE Alu 1 286 -25 208 129 32 81 chr1 35686928 35686990 -246506674 + MIR SINE MIR 146 204 -58 34 0 0 22 chr1 35687420 35687451 -246506213 + AT_rich Low_complexity Low_complexity 1 32 -12 1223 143 58 104 chr1 35687451 35687594 -246506070 - AluJo SINE Alu -18 294 171 2303 108 13 0 chr1 35687594 35687900 -246505764 - AluSg SINE Alu 0 310 1 1223 143 58 104 chr1 35687900 35688064 -246505600 - AluJo SINE Alu -141 171 1 34 0 0 22 chr1 35688064 35688077 -246505587 + AT_rich Low_complexity Low_complexity 32 44 0 2241 115 0 3 chr1 35688128 35688432 -246505232 + AluSc SINE Alu 1 303 -6 2225 108 0 3 chr1 35688552 35688840 -246504824 + AluSx SINE Alu 1 287 -25 31 44 0 0 chr1 35688966 35689011 -246504653 + AT_rich Low_complexity Low_complexity 1 45 0 1608 163 8 12 chr1 35689039 35689296 -246504368 - AluJo SINE Alu -56 256 1 234 203 68 68 chr1 35689333 35689407 -246504257 + L2 LINE L2 2205 2278 -1036 333 0 0 0 chr1 35689971 35690008 -246503656 + (CA)n Simple_repeat Simple_repeat 2 38 0 233 256 54 62 chr1 35690395 35690524 -246503140 - MIR SINE MIR -15 247 120 1771 130 0 0 chr1 35690648 35690901 -246502763 - AluSx SINE Alu -16 296 44 1582 148 165 62 chr1 35690924 35690990 -246502674 + MSTC LTR MaLR 1 59 -369 1960 160 0 3 chr1 35690990 35691296 -246502368 - AluJb SINE Alu -6 306 2 1582 148 165 62 chr1 35691296 35691433 -246502231 + MSTC LTR MaLR 59 180 -248 2578 114 72 8 chr1 35691433 35691835 -246501829 - MSTA LTR MaLR 0 428 1 1582 148 165 62 chr1 35691835 35691969 -246501695 + MSTC LTR MaLR 180 374 -54 303 93 0 173 chr1 35692011 35692086 -246501578 + MSTC LTR MaLR 361 422 -6 2096 137 6 19 chr1 35692144 35692458 -246501206 - AluSx SINE Alu -2 310 1 284 350 81 25 chr1 35692671 35692868 -246500796 + L2 LINE L2 2837 3044 -228 1244 203 36 73 chr1 35692880 35693102 -246500562 - MLT1C LTR MaLR -65 402 200 643 173 55 8 chr1 35693102 35693229 -246500435 - FLAM_C SINE Alu 0 133 1 1244 203 36 73 chr1 35693229 35693419 -246500245 - MLT1C LTR MaLR -267 200 5 1683 149 41 60 chr1 35693473 35693788 -246499876 - AluJo SINE Alu -3 309 1 2295 78 3 17 chr1 35693810 35694103 -246499561 - AluSp SINE Alu -24 289 1 2155 112 3 22 chr1 35694103 35694415 -246499249 - AluSx SINE Alu -5 307 1 600 181 9 0 chr1 35694785 35694890 -246498774 + FRAM SINE Alu 2 107 -69 2136 137 0 31 chr1 35694983 35695305 -246498359 - AluSx SINE Alu 0 312 1 219 311 0 0 chr1 35696372 35696433 -246497231 - L3 LINE CR1 -11 1566 1506 287 176 0 0 chr1 35696529 35696580 -246497084 + MER112 DNA MER1_type 1 51 -209 1699 177 16 29 chr1 35696580 35696890 -246496774 + AluJb SINE Alu 1 306 -6 1680 159 14 17 chr1 35696900 35697190 -246496474 + AluJo SINE Alu 1 289 -23 27 0 0 0 chr1 35697190 35697217 -246496447 + AT_rich Low_complexity Low_complexity 1 27 0 397 280 59 0 chr1 35697287 35697405 -246496259 - L2 LINE L2 0 3313 3189 2518 69 0 3 chr1 35697452 35697755 -246495909 + AluY SINE Alu 1 302 -9 1818 161 0 35 chr1 35697764 35698075 -246495589 + AluJb SINE Alu 1 300 -12 293 182 61 0 chr1 35698090 35698156 -246495508 - L3 LINE CR1 -276 1301 1232 293 268 24 81 chr1 35698234 35698357 -246495307 - L2 LINE L2 -248 3065 2950 289 217 52 52 chr1 35698392 35698507 -246495157 - L2 LINE L2 -459 2855 2741 2213 123 131 8 chr1 35698545 35698926 -246494738 - MSTA LTR MaLR 0 428 1 2506 74 7 0 chr1 35699045 35699354 -246494310 + AluY SINE Alu 1 311 0 2112 108 0 30 chr1 35699394 35699690 -246493974 + AluSg SINE Alu 3 289 -21 4816 203 74 54 chr1 35699690 35699923 -246493741 - L1ME2 LINE L1 -10 6223 5996 2569 51 0 0 chr1 35699923 35700218 -246493446 - AluY SINE Alu -16 295 1 4816 203 74 54 chr1 35700218 35700914 -246492750 - L1ME2 LINE L1 -237 5996 5315 2487 81 3 0 chr1 35700914 35701224 -246492440 - AluY SINE Alu 0 311 1 4816 203 74 54 chr1 35701224 35701312 -246492352 - L1ME2 LINE L1 -918 5315 5230 774 149 0 71 chr1 35701312 35701453 -246492211 - FLAM_C SINE Alu 0 133 3 4816 203 74 54 chr1 35701453 35702409 -246491255 - L1ME2 LINE L1 -1003 5230 4217 2296 107 0 0 chr1 35702409 35702708 -246490956 - AluSx SINE Alu -13 299 1 4816 203 74 54 chr1 35702708 35703098 -246490566 - L1ME2 LINE L1 -2016 4217 3836 2227 112 0 7 chr1 35703114 35703409 -246490255 - AluSx SINE Alu -19 293 1 1257 139 0 0 chr1 35703433 35703606 -246490058 - AluSg/x SINE Alu -9 301 129 2772 201 58 104 chr1 35703606 35703928 -246489736 - L1ME2 LINE L1 -2409 3806 3471 2223 130 0 3 chr1 35703928 35704229 -246489435 - AluSx SINE Alu -12 300 1 2772 201 58 104 chr1 35704229 35704600 -246489064 - L1ME2 LINE L1 -2744 3471 3085 2338 82 0 16 chr1 35704600 35704906 -246488758 - AluSg SINE Alu -9 301 1 2772 201 58 104 chr1 35704906 35704955 -246488709 - L1ME2 LINE L1 -3130 3085 3035 1957 158 3 13 chr1 35704955 35705266 -246488398 - AluJb SINE Alu -4 308 1 2772 201 58 104 chr1 35705266 35705325 -246488339 - L1ME2 LINE L1 -3180 3035 2975 2489 74 0 7 chr1 35705325 35705635 -246488029 + AluSp SINE Alu 1 308 -5 2772 201 58 104 chr1 35705635 35705855 -246487809 - L1ME2 LINE L1 -3240 2975 2841 1703 164 31 10 chr1 35705855 35706148 -246487516 + AluJo SINE Alu 1 299 -13 2772 201 58 104 chr1 35706148 35706305 -246487359 - L1ME2 LINE L1 -3374 2841 2678 1624 193 13 7 chr1 35706306 35706607 -246487057 - AluJo SINE Alu -9 303 1 460 248 28 0 chr1 35706607 35706748 -246486916 - L1ME2 LINE L1 -4094 2302 2158 385 216 32 53 chr1 35706731 35706749 -246486915 - L1ME2 LINE L1 -4185 2211 2194 * 2337 101 7 0 chr1 35706749 35707057 -246486607 - AluSg SINE Alu 0 310 1 385 216 32 53 chr1 35707057 35707109 -246486555 - L1ME2 LINE L1 -4202 2194 2142 1512 205 0 13 chr1 35707109 35707407 -246486257 + AluJo SINE Alu 11 304 -8 385 216 32 53 chr1 35707407 35707525 -246486139 - L1ME2 LINE L1 -4254 2142 2026 841 226 4 113 chr1 35707582 35707821 -246485843 + MER58A DNA MER1_type 11 223 -1 227 274 0 0 chr1 35707897 35707948 -246485716 - L1ME2 LINE L1 -4985 1220 1170 2335 95 7 0 chr1 35707967 35708261 -246485403 - AluSq SINE Alu -17 296 1 979 115 0 0 chr1 35708261 35708391 -246485273 - AluSq/x SINE Alu -176 136 7 2208 117 3 7 chr1 35708399 35708706 -246484958 - AluSx SINE Alu -6 306 1 1129 109 0 0 chr1 35708728 35708875 -246484789 - AluSg/x SINE Alu -13 297 151 688 142 0 0 chr1 35708875 35708981 -246484683 - AluJo/FLAM SINE Alu -205 107 2 659 251 103 92 chr1 35708982 35709116 -246484548 - L1ME2 LINE L1 -5210 1186 1055 1886 151 37 7 chr1 35709116 35709415 -246484249 - AluSx SINE Alu -4 308 1 659 251 103 92 chr1 35709415 35709444 -246484220 - L1ME2 LINE L1 -5341 1055 1028 2104 118 0 14 chr1 35709444 35709603 -246484061 - AluSx SINE Alu -20 292 137 1922 121 36 42 chr1 35709603 35709909 -246483755 - AluSx SINE Alu -8 304 1 2104 118 0 14 chr1 35709909 35710045 -246483619 - AluSx SINE Alu -175 137 1 659 251 103 92 chr1 35710045 35710224 -246483440 - L1ME2 LINE L1 -5368 1028 852 212 0 36 0 chr1 35710224 35710252 -246483412 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 949 191 0 0 chr1 35710253 35710410 -246483254 - FAM SINE Alu -18 157 1 659 251 103 92 chr1 35710410 35710699 -246482965 - L1ME2 LINE L1 -5544 852 541 2309 106 0 6 chr1 35710699 35711011 -246482653 + AluSx SINE Alu 1 310 -2 659 251 103 92 chr1 35711011 35711056 -246482608 - L1ME2 LINE L1 -5855 541 498 503 252 32 41 chr1 35711212 35711430 -246482234 - L1ME2 LINE L1 -6173 223 8 935 150 17 46 chr1 35711612 35711785 -246481879 + AluSg/x SINE Alu 135 302 -8 1961 135 27 17 chr1 35711804 35712101 -246481563 + AluSx SINE Alu 1 300 -12 295 313 0 10 chr1 35712105 35712201 -246481463 + L1ME LINE L1 5491 5585 -536 1241 182 151 23 chr1 35712249 35712600 -246481064 - MSTD LTR MaLR 0 396 1 389 95 93 0 chr1 35712612 35713000 -246480664 + (TA)n Simple_repeat Simple_repeat 1 424 0 2324 96 0 0 chr1 35713000 35713291 -246480373 - AluSq SINE Alu -22 291 1 1837 143 70 17 chr1 35713314 35713670 -246479994 - THE1C LTR MaLR 0 375 1 1572 137 9 0 chr1 35713772 35714005 -246479659 + MER46A DNA MER2_type 1 235 -1 2248 96 24 0 chr1 35714005 35714296 -246479368 + AluSp SINE Alu 1 298 -15 2044 136 7 7 chr1 35714738 35715039 -246478625 + AluJb SINE Alu 1 301 -11 278 217 0 14 chr1 35715125 35715194 -246478470 + L1M4 LINE L1 3806 3873 -2273 1614 174 65 119 chr1 35715195 35715389 -246478275 + MLT1C LTR MaLR 1 204 -263 2044 123 0 45 chr1 35715389 35715697 -246477967 - AluSx SINE Alu -18 294 1 1614 174 65 119 chr1 35715697 35715996 -246477668 + MLT1C LTR MaLR 204 467 0 1908 160 0 25 chr1 35716140 35716459 -246477205 - AluJo SINE Alu -1 311 1 900 275 97 38 chr1 35716461 35716663 -246477001 + L1M4 LINE L1 4027 4215 -1931 1759 149 62 0 chr1 35716663 35716951 -246476713 - AluJo SINE Alu -4 308 3 900 275 97 38 chr1 35716951 35717282 -246476382 + L1M4 LINE L1 4215 4592 -1554 2366 94 0 3 chr1 35717359 35717667 -246475997 + AluSq SINE Alu 1 307 -6 2172 98 7 10 chr1 35717675 35717970 -246475694 + AluSp SINE Alu 1 294 -19 1718 243 156 25 chr1 35718001 35718602 -246475062 - L2 LINE L2 -2 3311 2545 2285 74 21 0 chr1 35718602 35718886 -246474778 + AluSq SINE Alu 1 290 -23 1718 243 156 25 chr1 35718886 35719127 -246474537 - L2 LINE L2 -768 2545 2337 802 144 0 0 chr1 35719138 35719256 -246474408 + FLAM_C SINE Alu 1 118 -15 30 0 0 0 chr1 35719256 35719286 -246474378 + AT_rich Low_complexity Low_complexity 1 30 0 4293 172 49 8 chr1 35719291 35720025 -246473639 + MER21B LTR ERV1 1 764 -99 1287 248 73 65 chr1 35720025 35720341 -246473323 - L2 LINE L2 -1101 2213 1890 2309 110 0 0 chr1 35720341 35720633 -246473031 + AluSx SINE Alu 1 292 -20 1287 248 73 65 chr1 35720633 35720812 -246472852 - L2 LINE L2 -1424 1890 1714 315 148 0 0 chr1 35720817 35720871 -246472793 - Alu SINE Alu 0 302 249 2321 95 0 0 chr1 35720895 35721190 -246472474 - AluSx SINE Alu -17 295 1 2148 117 0 7 chr1 35721192 35721491 -246472173 - AluSx SINE Alu -15 297 1 425 266 70 21 chr1 35721574 35721717 -246471947 - L1MEd LINE L1 -5421 698 549 933 105 0 8 chr1 35721740 35721873 -246471791 - FLAM_C SINE Alu -1 132 1 527 302 44 22 chr1 35721874 35722099 -246471565 - L1MEd LINE L1 -5558 561 332 418 280 114 0 chr1 35722202 35722334 -246471330 - L1MEd LINE L1 -5969 150 4 231 255 70 70 chr1 35722346 35722503 -246471161 + L2 LINE L2 2982 3138 -175 2079 124 0 49 chr1 35722542 35722848 -246470816 - AluSx SINE Alu -21 291 1 1752 149 0 40 chr1 35722857 35723158 -246470506 - AluJo SINE Alu -23 289 1 826 128 30 38 chr1 35723270 35723403 -246470261 + FLAM_C SINE Alu 1 132 -1 2249 79 7 0 chr1 35723463 35723780 -246469884 - AluSc SINE Alu 0 319 1 1522 134 11 65 chr1 35723927 35724128 -246469536 + AluJo SINE Alu 35 218 -94 2268 100 0 22 chr1 35724128 35724447 -246469217 - AluSx SINE Alu 0 312 1 1522 134 11 65 chr1 35724447 35724522 -246469142 + AluJo SINE Alu 218 296 -16 2277 106 0 7 chr1 35725554 35725855 -246467809 + AluSx SINE Alu 6 304 -8 28 48 0 0 chr1 35725874 35725916 -246467748 + AT_rich Low_complexity Low_complexity 1 42 0 2274 100 0 17 chr1 35726120 35726421 -246467243 + AluSg SINE Alu 1 296 -14 202 229 0 0 chr1 35726563 35726611 -246467053 + T-rich Low_complexity Low_complexity 1 48 0 2227 119 6 3 chr1 35726895 35727207 -246466457 - AluSq SINE Alu 0 313 1 572 107 0 0 chr1 35727207 35727291 -246466373 - AluJ/FRAM SINE Alu -10 302 219 2109 118 0 26 chr1 35727291 35727597 -246466067 - AluJb SINE Alu -14 298 1 1796 145 9 50 chr1 35727630 35727727 -246465937 + AluSx SINE Alu 1 100 -212 2572 51 0 3 chr1 35727727 35728023 -246465641 + AluY SINE Alu 1 295 -16 1796 145 9 50 chr1 35728023 35728243 -246465421 + AluSx SINE Alu 100 305 -7 2193 100 42 0 chr1 35728642 35728931 -246464733 - AluSx SINE Alu -8 304 4 1030 253 65 32 chr1 35728940 35729311 -246464353 - L1MC4 LINE L1 -964 7078 6696 1958 121 28 42 chr1 35729381 35729693 -246463971 - AluSx SINE Alu 0 308 1 2304 118 0 13 chr1 35729863 35730176 -246463488 - AluSx SINE Alu -3 309 1 21 0 0 0 chr1 35730270 35730291 -246463373 + AT_rich Low_complexity Low_complexity 1 21 0 262 197 0 49 chr1 35730377 35730438 -246463226 - MIR SINE MIR -42 220 163 26 0 0 0 chr1 35730743 35730769 -246462895 + AT_rich Low_complexity Low_complexity 1 26 0 1145 168 34 38 chr1 35730864 35731073 -246462591 + AluJb SINE Alu 86 293 -19 2246 96 0 0 chr1 35731077 35731404 -246462260 + AluSg SINE Alu 2 328 0 2368 83 10 3 chr1 35732833 35733134 -246460530 + AluSq SINE Alu 1 303 -10 208 196 137 0 chr1 35733222 35733273 -246460391 - MIR SINE MIR -96 166 109 2474 70 7 0 chr1 35733687 35733988 -246459676 + AluSp SINE Alu 1 303 -10 2571 61 0 3 chr1 35734180 35734490 -246459174 - AluY SINE Alu -2 309 1 2316 84 3 0 chr1 35734781 35735067 -246458597 - AluSg SINE Alu -23 287 1 2450 69 10 0 chr1 35736508 35736811 -246456853 + AluSx SINE Alu 1 306 -6 2363 106 0 3 chr1 35737061 35737373 -246456291 + AluSx SINE Alu 1 311 -1 7362 166 102 49 chr1 35737595 35739258 -246454406 - MER52A LTR ERV1 0 1755 5 2157 128 7 0 chr1 35739704 35740001 -246453663 + AluSx SINE Alu 1 299 -13 494 176 151 8 chr1 35740261 35740380 -246453284 + MER5B DNA MER1_type 1 136 -42 2485 65 0 0 chr1 35740385 35740675 -246452989 + AluSc SINE Alu 1 290 -19 1731 163 7 30 chr1 35740679 35740974 -246452690 + AluJo SINE Alu 1 288 -24 387 0 0 0 chr1 35740977 35741020 -246452644 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 2239 99 17 0 chr1 35741837 35742129 -246451535 - AluSx SINE Alu -15 297 1 2256 96 14 0 chr1 35742185 35742478 -246451186 + AluSq SINE Alu 3 299 -14 1567 162 7 52 chr1 35742630 35742939 -246450725 + AluJo SINE Alu 13 307 -5 2286 75 32 16 chr1 35743279 35743587 -246450077 + AluSq SINE Alu 1 313 0 1941 104 7 7 chr1 35744055 35744325 -246449339 - AluSx SINE Alu -42 270 1 1459 180 70 0 chr1 35744611 35744711 -246448953 + AluJo SINE Alu 1 93 -219 4893 85 19 27 chr1 35744711 35745404 -246448260 + LTR8 LTR ERV1 5 691 0 1459 180 70 0 chr1 35745404 35745575 -246448089 + AluJo SINE Alu 93 291 -21 2270 102 10 0 chr1 35745575 35745869 -246447795 + AluSx SINE Alu 1 297 -15 1272 40 7 0 chr1 35745869 35746019 -246447645 - MER4E LTR ERV1 -615 151 1 609 14 0 0 chr1 35746068 35746138 -246447526 + (TTATA)n Simple_repeat Simple_repeat 3 72 0 1205 74 0 0 chr1 35746144 35746292 -246447372 - AluSg/x SINE Alu -20 290 143 2007 96 0 8 chr1 35746293 35746554 -246447110 + AluSc SINE Alu 34 292 -17 2358 86 3 0 chr1 35746783 35747075 -246446589 - AluSp SINE Alu -20 293 1 2355 98 0 0 chr1 35747149 35747444 -246446220 - AluSq SINE Alu -18 295 1 197 328 0 0 chr1 35747536 35747597 -246446067 - MIR3 SINE MIR -27 181 121 886 152 0 0 chr1 35747874 35748006 -246445658 + FLAM_C SINE Alu 2 133 0 2345 79 0 20 chr1 35748023 35748326 -246445338 + AluY SINE Alu 1 297 -14 1494 170 23 4 chr1 35748419 35748684 -246444980 - AluJb SINE Alu -6 306 37 2246 110 3 0 chr1 35748984 35749284 -246444380 - AluSg1 SINE Alu -8 301 1 370 253 86 52 chr1 35749364 35749538 -246444126 + Charlie8 DNA MER1_type 106 285 -2132 2331 107 3 3 chr1 35749940 35750250 -246443414 - AluSp SINE Alu -3 310 1 23 78 0 0 chr1 35750271 35750322 -246443342 + AT_rich Low_complexity Low_complexity 1 51 0 504 107 40 0 chr1 35750390 35750465 -246443199 + MER51A LTR ERV1 1 78 -556 1868 124 25 44 chr1 35750504 35750819 -246442845 + MER51A LTR ERV1 326 634 0 2126 128 0 3 chr1 35750871 35751168 -246442496 - AluJb SINE Alu -16 296 1 2049 129 0 10 chr1 35751518 35751820 -246441844 - AluSx SINE Alu -13 299 1 1853 160 14 7 chr1 35752127 35752415 -246441249 + AluJo SINE Alu 1 290 -22 2423 91 3 0 chr1 35752758 35753065 -246440599 + AluY SINE Alu 1 308 -3 200 330 110 10 chr1 35753785 35753885 -246439779 + MIR SINE MIR 36 145 -63 3078 124 37 8 chr1 35753886 35754377 -246439287 + L1PA15 LINE L1 5661 6165 0 709 296 182 9 chr1 35754843 35755272 -246438392 + L2 LINE L2 1079 1581 -1733 710 278 179 26 chr1 35755298 35755478 -246438186 + L2 LINE L2 2825 2976 -337 2550 98 11 21 chr1 35755478 35755855 -246437809 + THE1C LTR MaLR 1 373 -2 710 278 179 26 chr1 35755855 35756098 -246437566 + L2 LINE L2 2976 3313 0 2349 105 0 0 chr1 35756251 35756546 -246437118 + AluSx SINE Alu 1 295 -17 2216 104 10 0 chr1 35756581 35756878 -246436786 + AluSx SINE Alu 1 300 -12 1988 114 40 4 chr1 35756901 35757213 -246436451 + AluSx SINE Alu 1 322 0 626 202 0 25 chr1 35757239 35757358 -246436306 + FLAM_A SINE Alu 10 125 -17 1964 128 48 39 chr1 35757434 35757510 -246436154 + MER7A DNA MER2_type 1 75 -2963 2354 93 0 7 chr1 35757510 35757812 -246435852 - AluSq SINE Alu -13 300 1 1964 128 48 39 chr1 35757812 35758071 -246435593 + MER7A DNA MER2_type 75 337 -9 1210 194 49 74 chr1 35758093 35758177 -246435487 + MER58B DNA MER1_type 1 86 -2334 2240 119 3 0 chr1 35758177 35758488 -246435176 - AluSx SINE Alu 0 312 1 1210 194 49 74 chr1 35758488 35758753 -246434911 + MER58B DNA MER1_type 86 341 0 244 329 79 0 chr1 35758827 35758967 -246434697 - MIR3 SINE MIR -28 180 30 1687 159 10 34 chr1 35759394 35759690 -246433974 + AluJo SINE Alu 1 289 -23 2032 84 7 46 chr1 35759702 35759987 -246433677 + AluSp SINE Alu 1 274 -39 2425 84 3 0 chr1 35759994 35760290 -246433374 + AluSx SINE Alu 1 297 -15 1769 158 31 3 chr1 35760302 35760594 -246433070 + AluSg SINE Alu 1 300 -10 1947 164 0 16 chr1 35760768 35761085 -246432579 + AluJo SINE Alu 1 312 0 2385 99 0 0 chr1 35761385 35761689 -246431975 - AluSc SINE Alu -4 305 2 195 69 0 0 chr1 35761712 35761741 -246431923 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 875 94 11 171 chr1 35761812 35761884 -246431780 + AluJo SINE Alu 72 154 -158 1491 139 19 104 chr1 35761884 35762193 -246431471 + AluJo SINE Alu 1 283 -29 198 0 0 0 chr1 35762193 35762215 -246431449 + (CAAT)n Simple_repeat Simple_repeat 2 23 0 875 94 11 171 chr1 35762215 35762322 -246431342 + AluJo SINE Alu 152 223 -89 2068 123 19 7 chr1 35762368 35762676 -246430988 + AluSx SINE Alu 1 312 0 1922 167 3 0 chr1 35762713 35763024 -246430640 + AluJo SINE Alu 1 312 0 22 0 0 0 chr1 35763531 35763553 -246430111 + AT_rich Low_complexity Low_complexity 1 22 0 2376 95 0 22 chr1 35763632 35763948 -246429716 - AluSx SINE Alu -3 309 1 1227 165 5 36 chr1 35764052 35764276 -246429388 - AluJb SINE Alu -10 302 86 422 153 0 59 chr1 35764387 35764472 -246429192 + MER66B LTR ERV1 315 394 -92 685 223 7 0 chr1 35764881 35765020 -246428644 + FLAM_C SINE Alu 2 141 -2 2336 103 0 3 chr1 35765854 35766165 -246427499 - AluSg SINE Alu 0 310 1 498 104 26 0 chr1 35766168 35766245 -246427419 - Alu SINE Alu -11 298 220 460 81 0 0 chr1 35766638 35766723 -246426941 + Alu SINE Alu 223 307 0 2330 90 0 13 chr1 35766916 35767215 -246426449 - AluSx SINE Alu -17 295 1 235 277 36 36 chr1 35767246 35767309 -246426355 - MIR3 SINE MIR -6 202 137 3049 161 42 83 chr1 35767309 35768030 -246425634 + LTR8 LTR ERV1 1 691 0 235 277 36 36 chr1 35768030 35768049 -246425615 - MIR3 SINE MIR -70 138 120 2085 104 27 3 chr1 35768050 35768347 -246425317 + AluSq SINE Alu 3 306 -7 2546 177 103 21 chr1 35768363 35768889 -246424775 + MER67B LTR ERV1 93 661 0 1008 210 18 56 chr1 35768892 35768921 -246424743 + L1ME2 LINE L1 5874 5903 -261 2102 107 7 20 chr1 35768921 35769221 -246424443 + AluSg SINE Alu 1 296 -14 1008 210 18 56 chr1 35769221 35769477 -246424187 + L1ME2 LINE L1 5903 6148 -16 1888 143 0 17 chr1 35769480 35769774 -246423890 - AluSx SINE Alu -21 291 3 23 54 0 0 chr1 35769776 35769813 -246423851 + AT_rich Low_complexity Low_complexity 1 37 0 213 39 0 0 chr1 35769867 35769893 -246423771 + (T)n Simple_repeat Simple_repeat 1 26 0 1816 97 4 0 chr1 35769903 35770129 -246423535 - AluSc SINE Alu -82 227 1 690 164 22 0 chr1 35770136 35770270 -246423394 - Charlie1 DNA MER1_type -33 2728 2592 1915 163 0 3 chr1 35770270 35770564 -246423100 + AluSx SINE Alu 1 293 -19 1601 189 0 14 chr1 35770591 35770876 -246422788 + AluJo SINE Alu 1 281 -31 228 242 65 16 chr1 35770880 35770942 -246422722 - Charlie1a DNA MER1_type -1247 208 144 * 369 150 0 50 chr1 35770926 35771006 -246422658 - AluJ/FRAM SINE Alu 0 302 227 654 161 0 73 chr1 35771022 35771159 -246422505 - FRAM SINE Alu -38 138 12 824 195 32 0 chr1 35771159 35771313 -246422351 - Charlie1a DNA MER1_type -1291 164 6 338 235 141 0 chr1 35771318 35771403 -246422261 + L1ME3A LINE L1 6065 6161 -9 1975 141 7 16 chr1 35771413 35771717 -246421947 + AluSx SINE Alu 1 301 -11 550 189 0 0 chr1 35771717 35771812 -246421852 - FAM SINE Alu -30 155 61 456 153 35 80 chr1 35771833 35771875 -246421789 - Charlie1 DNA MER1_type -196 2565 2523 1295 217 17 17 chr1 35771875 35772170 -246421494 + AluJo SINE Alu 3 297 -15 456 153 35 80 chr1 35772170 35772346 -246421318 - Charlie1 DNA MER1_type -238 2523 2309 365 106 0 0 chr1 35772346 35772393 -246421271 + HY3 scRNA scRNA 1 47 -54 965 100 14 14 chr1 35772920 35773060 -246420604 + AluSg/x SINE Alu 154 293 -19 602 146 204 131 chr1 35773060 35773115 -246420549 + Charlie1 DNA MER1_type 2271 2321 -440 649 139 0 0 chr1 35773115 35773216 -246420448 - HY3 scRNA scRNA 0 101 1 602 146 204 131 chr1 35773216 35773392 -246420272 + Charlie1 DNA MER1_type 2321 2527 -234 1295 217 17 17 chr1 35773392 35773687 -246419977 - AluJo SINE Alu -15 297 3 602 146 204 131 chr1 35773687 35773729 -246419935 + Charlie1 DNA MER1_type 2527 2565 -196 578 179 0 0 chr1 35773750 35773845 -246419819 + FAM SINE Alu 61 155 -30 2153 131 0 16 chr1 35773845 35774151 -246419513 - AluSx SINE Alu -11 301 1 1828 170 0 3 chr1 35774248 35774536 -246419128 - AluSx SINE Alu -25 287 1 333 200 35 0 chr1 35774536 35774621 -246419043 + Charlie1 DNA MER1_type 2592 2679 -82 745 52 0 21 chr1 35774741 35774837 -246418827 - AluY SINE Alu -148 163 70 450 209 22 0 chr1 35774837 35774928 -246418736 - HY4 scRNA scRNA 0 93 1 2293 116 0 3 chr1 35775120 35775430 -246418234 - AluSg SINE Alu -1 309 1 2176 109 3 3 chr1 35775439 35775732 -246417932 - AluSx SINE Alu -19 293 1 2275 106 0 7 chr1 35775732 35776035 -246417629 - AluSp SINE Alu -12 301 1 1143 143 85 98 chr1 35776040 35776191 -246417473 - AluJb SINE Alu -1 311 160 2072 91 0 4 chr1 35776191 35776456 -246417208 - AluSg SINE Alu -46 264 1 1143 143 85 98 chr1 35776456 35776571 -246417093 - AluJb SINE Alu -152 160 47 4439 50 7 4 chr1 35776571 35777127 -246416537 - LTR6B LTR ERV1 0 558 1 1143 143 85 98 chr1 35777127 35777166 -246416498 - AluJb SINE Alu -265 47 9 1474 191 16 44 chr1 35777187 35777506 -246416158 - AluJo SINE Alu 0 312 3 428 195 37 15 chr1 35777530 35777562 -246416102 - Tigger3(Golem) DNA MER2_type -241 2797 2767 2361 80 7 7 chr1 35777562 35777862 -246415802 + AluSq SINE Alu 1 300 -13 428 195 37 15 chr1 35777862 35777938 -246415726 - Tigger3(Golem) DNA MER2_type -271 2767 1 638 193 0 25 chr1 35778014 35778133 -246415531 - FLAM_A SINE Alu -17 125 10 1987 114 40 4 chr1 35778159 35778476 -246415188 - AluSx SINE Alu 0 327 1 2230 101 10 0 chr1 35778499 35778796 -246414868 - AluSx SINE Alu -12 300 1 2365 102 0 0 chr1 35778831 35779126 -246414538 - AluSx SINE Alu -17 295 1 710 278 179 26 chr1 35779279 35779522 -246414142 - L2 LINE L2 0 3313 3109 2550 98 11 21 chr1 35779522 35779899 -246413765 - THE1C LTR MaLR -2 373 1 710 278 179 26 chr1 35779899 35780079 -246413585 - L2 LINE L2 -204 3109 2825 709 296 182 9 chr1 35780105 35780534 -246413130 - L2 LINE L2 -1733 1581 1079 3078 124 37 8 chr1 35780999 35781490 -246412174 - L1PA15 LINE L1 0 6165 5661 200 330 110 10 chr1 35781491 35781591 -246412073 - MIR SINE MIR -63 145 36 2436 88 3 0 chr1 35782311 35782618 -246411046 - AluY SINE Alu -3 308 1 1853 160 14 7 chr1 35782959 35783247 -246410417 - AluJo SINE Alu -22 290 1 2049 129 0 10 chr1 35783554 35783856 -246409808 + AluSx SINE Alu 1 299 -13 2027 128 0 3 chr1 35784206 35784503 -246409161 + AluJb SINE Alu 1 296 -16 1649 138 29 45 chr1 35784555 35784867 -246408797 - MER51A LTR ERV1 0 634 328 490 107 40 0 chr1 35784908 35784983 -246408681 - MER51A LTR ERV1 -556 78 1 23 78 0 0 chr1 35785051 35785102 -246408562 + AT_rich Low_complexity Low_complexity 1 51 0 2215 110 3 3 chr1 35785123 35785433 -246408231 + AluSp SINE Alu 1 310 -3 369 253 86 52 chr1 35785835 35786009 -246407655 - Charlie8 DNA MER1_type -2132 285 106 2146 110 3 0 chr1 35786089 35786389 -246407275 + AluSg1 SINE Alu 1 301 -8 1449 176 19 4 chr1 35786690 35786957 -246406707 + AluJb SINE Alu 39 309 -3 2226 80 0 20 chr1 35787046 35787348 -246406316 - AluY SINE Alu -15 296 1 901 152 0 0 chr1 35787365 35787497 -246406167 - FLAM_C SINE Alu 0 133 2 213 328 0 0 chr1 35787774 35787835 -246405829 + MIR3 SINE MIR 121 181 -27 2241 98 0 0 chr1 35787927 35788222 -246405442 + AluSq SINE Alu 1 295 -18 2242 88 3 0 chr1 35788296 35788590 -246405074 + AluSp SINE Alu 1 295 -18 1160 193 111 18 chr1 35789204 35789266 -246404398 - MER4E LTR ERV1 -231 535 480 2016 118 3 13 chr1 35789266 35789571 -246404093 + AluSc SINE Alu 1 302 -7 1160 193 111 18 chr1 35789571 35789812 -246403852 - MER4E LTR ERV1 -286 480 219 1896 112 4 0 chr1 35789812 35790080 -246403584 - AluSx SINE Alu -5 307 39 729 84 0 11 chr1 35791941 35792036 -246401628 - AluY SINE Alu -207 104 11 277 182 0 0 chr1 35792036 35792080 -246401584 - AluSx SINE Alu -256 44 1 2121 113 7 3 chr1 35792097 35792398 -246401266 - AluSx SINE Alu -9 303 2 267 237 0 17 chr1 35793623 35793682 -246399982 - AluSp/q SINE Alu -16 287 230 783 134 0 74 chr1 35793722 35793871 -246399793 - FLAM_C SINE Alu 0 143 6 742 213 17 70 chr1 35793874 35793949 -246399715 + L2 LINE L2 3084 3161 -152 2333 76 0 3 chr1 35793949 35794250 -246399414 - AluY SINE Alu -11 300 1 742 213 17 70 chr1 35794250 35794404 -246399260 + L2 LINE L2 3161 3301 -12 2517 226 36 13 chr1 35794412 35794943 -246398721 - MLT1G1 LTR MaLR -50 545 3 327 190 17 0 chr1 35795079 35795137 -246398527 - MLT1J LTR MaLR -325 186 128 * 878 196 67 11 chr1 35795107 35795286 -246398378 - MER21B LTR ERV1 -346 517 329 1354 225 98 56 chr1 35795894 35796041 -246397623 + LTR33 LTR ERVL 43 182 -339 2027 131 0 34 chr1 35796041 35796361 -246397303 - AluSx SINE Alu -3 309 1 1354 225 98 56 chr1 35796361 35796662 -246397002 + LTR33 LTR ERVL 182 510 -11 839 236 23 50 chr1 35796695 35796915 -246396749 + AluJo SINE Alu 89 302 -10 1060 81 0 0 chr1 35796923 35797059 -246396605 + AluSq/x SINE Alu 1 136 -176 2319 64 3 0 chr1 35797059 35797394 -246396270 + AluY SINE Alu 1 311 0 2254 113 0 0 chr1 35797398 35797708 -246395956 + AluSq SINE Alu 1 310 -3 321 217 83 67 chr1 35797983 35798103 -246395561 + MIR SINE MIR 81 202 -60 1623 110 103 7 chr1 35798188 35798460 -246395204 - AluSq SINE Alu -15 298 1 354 156 31 0 chr1 35798558 35798622 -246395042 - AluJo SINE Alu -4 298 233 960 136 0 87 chr1 35798623 35798807 -246394857 - AluJo SINE Alu -144 168 1 339 261 36 18 chr1 35798821 35798932 -246394732 + MIR SINE MIR 39 151 -111 2384 75 3 0 chr1 35798933 35799240 -246394424 + AluSp SINE Alu 1 308 -5 556 275 5 68 chr1 35799588 35799625 -246394039 - MIR SINE MIR -15 247 209 2209 110 0 0 chr1 35799625 35799926 -246393738 - AluSx SINE Alu -9 303 3 556 275 5 68 chr1 35799926 35800095 -246393569 - MIR SINE MIR -53 209 54 257 333 155 46 chr1 35800219 35800282 -246393382 + MIR SINE MIR 60 115 -147 2379 79 0 0 chr1 35800282 35800586 -246393078 - AluY SINE Alu -7 304 1 2290 97 0 0 chr1 35800588 35800888 -246392776 - AluSx SINE Alu -12 300 1 257 333 155 46 chr1 35800888 35800995 -246392669 + MIR SINE MIR 115 252 -10 21 57 0 0 chr1 35801149 35801184 -246392480 + GC_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr1 35801193 35801224 -246392440 + GC_rich Low_complexity Low_complexity 1 31 0 2288 68 0 19 chr1 35801506 35801814 -246391850 - AluY SINE Alu -9 302 1 321 264 124 47 chr1 35802264 35802393 -246391271 + L2 LINE L2 2914 3052 -220 2226 69 0 28 chr1 35802424 35802743 -246390921 - AluY SINE Alu -1 310 1 1769 103 0 129 chr1 35802744 35803085 -246390579 - AluSx SINE Alu -14 298 2 221 184 20 0 chr1 35803286 35803335 -246390329 + (CA)n Simple_repeat Simple_repeat 1 50 0 2108 121 3 0 chr1 35803461 35803759 -246389905 - AluSq SINE Alu -13 300 2 2213 85 10 0 chr1 35803769 35804062 -246389602 - AluSq SINE Alu -17 296 1 2355 57 27 0 chr1 35804062 35804358 -246389306 - AluSp SINE Alu -7 306 3 189 0 0 0 chr1 35804756 35804777 -246388887 + (GGCTG)n Simple_repeat Simple_repeat 1 21 0 513 252 56 0 chr1 35804959 35805102 -246388562 - MIR SINE MIR -51 211 61 192 307 61 35 chr1 35805267 35805381 -246388283 - MIR3 SINE MIR -78 130 14 226 254 56 0 chr1 35806284 35806355 -246387309 - MIR3 SINE MIR -45 163 89 1878 138 10 3 chr1 35806380 35806676 -246386988 - AluJb SINE Alu -13 299 2 412 260 10 10 chr1 35806848 35806948 -246386716 - MIR SINE MIR -144 118 19 1413 177 71 3 chr1 35809948 35810231 -246383433 - AluSx SINE Alu 0 302 1 291 293 13 0 chr1 35810751 35810826 -246382838 - MER117 DNA MER1_type -26 171 96 252 188 21 0 chr1 35810882 35810930 -246382734 - MIR3 SINE MIR -51 157 109 841 165 82 6 chr1 35811052 35811210 -246382454 + FRAM SINE Alu 6 175 -1 585 172 0 28 chr1 35811231 35811376 -246382288 + GA-rich Low_complexity Low_complexity 4 144 0 1491 178 6 62 chr1 35811403 35811538 -246382126 + AluJb SINE Alu 11 152 -160 2372 65 0 0 chr1 35811538 35811868 -246381796 + AluY SINE Alu 1 330 0 1491 178 6 62 chr1 35811868 35812051 -246381613 + AluJb SINE Alu 152 312 0 1106 115 0 0 chr1 35812116 35812273 -246381391 + AluSg/x SINE Alu 154 310 0 1435 165 25 79 chr1 35812359 35812516 -246381148 + AluSq SINE Alu 1 134 -179 1977 106 30 20 chr1 35812516 35812818 -246380846 + AluSp SINE Alu 1 305 -8 1435 165 25 79 chr1 35812818 35812976 -246380688 + AluSq SINE Alu 134 299 -14 2257 89 3 0 chr1 35812978 35813271 -246380393 + AluSg1 SINE Alu 3 296 -13 212 179 0 0 chr1 35813355 35813394 -246380270 - MIR SINE MIR -94 114 76 289 288 171 0 chr1 35813836 35813947 -246379717 + MIR SINE MIR 81 210 -52 2092 101 18 0 chr1 35814736 35815022 -246378642 - AluSx SINE Alu -20 292 2 2395 69 0 0 chr1 35815138 35815442 -246378222 - AluY SINE Alu -7 304 1 188 33 0 33 chr1 35815442 35815472 -246378192 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1913 122 7 4 chr1 35815472 35815751 -246377913 - AluSg SINE Alu -29 281 2 2764 13 0 0 chr1 35815797 35816108 -246377556 - AluYa5 SINE Alu 0 311 1 2263 89 0 7 chr1 35816108 35816411 -246377253 - AluSq SINE Alu -12 301 1 560 296 155 5 chr1 35816434 35816640 -246377024 + MIR SINE MIR 1 237 -25 323 321 22 92 chr1 35816892 35817048 -246376616 - L2 LINE L2 -53 3219 3088 2295 82 3 3 chr1 35817048 35817353 -246376311 + AluSp SINE Alu 1 305 -8 323 321 22 92 chr1 35817353 35817467 -246376197 - L2 LINE L2 -184 3088 2968 487 236 49 21 chr1 35817637 35817781 -246375883 + MIR SINE MIR 64 211 -51 1358 143 0 18 chr1 35818599 35818823 -246374841 + AluJb SINE Alu 85 304 -8 355 287 46 9 chr1 35819138 35819246 -246374418 + MIR SINE MIR 16 127 -81 2343 75 7 0 chr1 35819317 35819622 -246374042 + AluSp SINE Alu 1 307 -6 2112 90 41 3 chr1 35819622 35819912 -246373752 + AluSg SINE Alu 1 301 -9 195 341 40 32 chr1 35820050 35820176 -246373488 + MIR SINE MIR 130 256 -6 2028 68 82 11 chr1 35820280 35820559 -246373105 - AluY SINE Alu -12 299 1 334 318 13 0 chr1 35820612 35820763 -246372901 + (TG)n Simple_repeat Simple_repeat 1 149 -1583 2046 142 0 3 chr1 35820763 35821073 -246372591 - AluSg SINE Alu -1 309 1 334 318 13 0 chr1 35821073 35821082 -246372582 + (TG)n Simple_repeat Simple_repeat 149 156 -1576 2168 91 0 17 chr1 35821082 35821262 -246372402 - AluSp SINE Alu 0 313 139 2447 57 0 0 chr1 35821262 35821560 -246372104 - AluY SINE Alu -13 298 1 2168 91 0 17 chr1 35821560 35821696 -246371968 - AluSp SINE Alu -174 139 2 334 318 13 0 chr1 35821696 35821725 -246371939 + (TG)n Simple_repeat Simple_repeat 156 183 -1549 1473 162 42 32 chr1 35821725 35821868 -246371796 - AluJo SINE Alu -25 287 147 2205 88 0 7 chr1 35821868 35822165 -246371499 - AluSq SINE Alu -18 295 1 1473 162 42 32 chr1 35822165 35822305 -246371359 - AluJo SINE Alu -165 147 1 334 318 13 0 chr1 35822305 35822322 -246371342 + (TG)n Simple_repeat Simple_repeat 183 1732 0 251 237 11 75 chr1 35823127 35823220 -246370444 - MIR SINE MIR -75 133 47 2541 52 0 0 chr1 35823297 35823606 -246370058 + AluY SINE Alu 1 309 -2 235 250 0 0 chr1 35823613 35823669 -246369995 - MIR SINE MIR -147 115 60 556 275 5 68 chr1 35823793 35823962 -246369702 + MIR SINE MIR 54 209 -53 2173 111 0 0 chr1 35823962 35824260 -246369404 + AluSx SINE Alu 3 300 -12 556 275 5 68 chr1 35824260 35824297 -246369367 + MIR SINE MIR 209 247 -15 2384 75 3 0 chr1 35824645 35824952 -246368712 - AluSp SINE Alu -5 308 1 343 277 27 18 chr1 35824953 35825065 -246368599 - MIR SINE MIR -111 151 39 354 157 8 67 chr1 35825079 35825328 -246368336 + AluJo SINE Alu 1 298 -4 1623 110 103 7 chr1 35825426 35825698 -246367966 + AluSq SINE Alu 1 298 -15 260 250 83 67 chr1 35825783 35825903 -246367761 - MIR SINE MIR -60 202 81 2175 119 0 3 chr1 35826178 35826489 -246367175 - AluSq SINE Alu -3 310 1 2297 74 3 0 chr1 35826493 35826830 -246366834 - AluY SINE Alu 0 311 1 1060 81 0 0 chr1 35826830 35826966 -246366698 - AluSq/x SINE Alu -177 136 1 839 236 23 50 chr1 35826974 35827194 -246366470 - AluJo SINE Alu -10 302 89 1354 225 98 56 chr1 35827227 35827528 -246366136 - LTR33 LTR ERVL -11 510 182 2027 131 0 34 chr1 35827528 35827848 -246365816 + AluSx SINE Alu 1 309 -3 1354 225 98 56 chr1 35827848 35827995 -246365669 - LTR33 LTR ERVL -339 182 43 860 161 78 61 chr1 35828602 35828782 -246364882 + MER21B LTR ERV1 329 596 -335 314 207 17 0 chr1 35828752 35828810 -246364854 + MLT1J LTR MaLR 128 186 -325 * 2505 224 36 13 chr1 35828946 35829477 -246364187 + MLT1G1 LTR MaLR 3 545 -50 742 213 17 70 chr1 35829485 35829639 -246364025 - L2 LINE L2 -12 3301 3161 2333 76 0 3 chr1 35829639 35829940 -246363724 + AluY SINE Alu 1 300 -11 742 213 17 70 chr1 35829940 35830015 -246363649 - L2 LINE L2 -152 3161 3084 783 135 0 45 chr1 35830018 35830151 -246363513 + FLAM_C SINE Alu 6 132 -11 318 231 120 46 chr1 35830212 35830331 -246363333 - L2 LINE L2 -212 3060 2951 1924 166 0 3 chr1 35830331 35830644 -246363020 + AluJo SINE Alu 1 312 0 318 231 120 46 chr1 35830644 35830740 -246362924 - L2 LINE L2 -321 2951 2829 201 284 18 9 chr1 35831255 35831364 -246362300 + (CA)n Simple_repeat Simple_repeat 1 110 0 28 0 0 0 chr1 35832278 35832306 -246361358 + GC_rich Low_complexity Low_complexity 1 28 0 29 47 0 0 chr1 35832332 35832375 -246361289 + GC_rich Low_complexity Low_complexity 1 43 0 23 54 0 0 chr1 35832427 35832464 -246361200 + GC_rich Low_complexity Low_complexity 1 37 0 299 229 193 0 chr1 35833508 35833591 -246360073 + MIR SINE MIR 25 123 -85 2023 115 3 0 chr1 35833859 35834154 -246359510 + AluSq SINE Alu 1 296 -17 496 192 126 60 chr1 35834256 35834354 -246359310 + MIR SINE MIR 59 174 -88 2160 121 3 3 chr1 35834354 35834659 -246359005 - AluSq SINE Alu -8 305 1 496 192 126 60 chr1 35834659 35834727 -246358937 + MIR SINE MIR 174 236 -26 2260 89 0 3 chr1 35835041 35835344 -246358320 + AluSg1 SINE Alu 1 302 -7 2128 109 0 13 chr1 35835618 35835929 -246357735 + AluSc SINE Alu 1 307 -2 1964 145 3 0 chr1 35835993 35836304 -246357360 + AluJo SINE Alu 1 312 0 317 344 8 8 chr1 35836388 35836510 -246357154 + L3 LINE CR1 696 817 -760 2245 76 0 3 chr1 35836544 35836835 -246356829 - AluY SINE Alu -20 291 2 2138 95 27 0 chr1 35836836 35837132 -246356532 - AluSx SINE Alu -8 304 1 1606 144 52 14 chr1 35837320 35837611 -246356053 - AluJb SINE Alu -10 302 1 1998 89 24 10 chr1 35837620 35837913 -246355751 - AluSp SINE Alu -16 297 1 185 330 70 40 chr1 35837917 35838017 -246355647 + L3 LINE CR1 1242 1344 -233 456 137 0 6 chr1 35838030 35838280 -246355384 + AluSx SINE Alu 6 294 -16 2163 93 3 7 chr1 35838326 35838617 -246355047 + AluSg SINE Alu 1 290 -20 827 136 8 0 chr1 35838628 35838753 -246354911 + AluSx SINE Alu 169 294 -18 2331 73 0 3 chr1 35840400 35840702 -246352962 - AluY SINE Alu -10 301 1 869 187 27 0 chr1 35840711 35840861 -246352803 - AluJ SINE Alu -12 290 137 1304 140 45 5 chr1 35840897 35841119 -246352545 - AluJb SINE Alu -81 231 1 521 70 28 0 chr1 35841119 35841190 -246352474 - AluJ SINE Alu -177 135 63 308 73 0 0 chr1 35841190 35841231 -246352433 + MADE1 DNA Mariner 38 78 -2 2020 114 0 17 chr1 35841691 35841990 -246351674 + AluSg SINE Alu 3 296 -14 426 178 41 0 chr1 35841994 35842067 -246351597 - Tigger3(Golem) DNA MER2_type -2953 76 1 632 202 0 25 chr1 35842143 35842262 -246351402 - FLAM_A SINE Alu -17 125 10 1865 114 40 4 chr1 35842288 35842600 -246351064 - AluSx SINE Alu 0 322 1 2092 104 10 0 chr1 35842623 35842920 -246350744 - AluSx SINE Alu -12 300 1 2218 105 0 0 chr1 35842955 35843250 -246350414 - AluSx SINE Alu -17 295 1 853 276 179 26 chr1 35843403 35843646 -246350018 - L2 LINE L2 0 3313 3109 2558 98 11 21 chr1 35843646 35844023 -246349641 - THE1C LTR MaLR -2 373 1 853 276 179 26 chr1 35844023 35844203 -246349461 - L2 LINE L2 -204 3109 2825 861 296 182 9 chr1 35844229 35844658 -246349006 - L2 LINE L2 -1733 1581 1079 197 203 0 102 chr1 35844760 35844819 -246348845 - MIR3 SINE MIR -4 204 152 3054 124 37 8 chr1 35845124 35845615 -246348049 - L1PA15 LINE L1 0 6165 5661 235 330 110 10 chr1 35845616 35845716 -246347948 - MIR SINE MIR -63 145 36 2295 91 3 0 chr1 35846436 35846743 -246346921 - AluY SINE Alu -3 308 1 1734 160 14 7 chr1 35847086 35847374 -246346290 - AluJo SINE Alu -22 290 1 1927 129 0 10 chr1 35847681 35847983 -246345681 + AluSx SINE Alu 1 299 -13 2003 128 0 3 chr1 35848333 35848630 -246345034 + AluJb SINE Alu 1 296 -16 1865 124 25 44 chr1 35848682 35848997 -246344667 - MER51A LTR ERV1 0 634 326 508 107 40 0 chr1 35849036 35849111 -246344553 - MER51A LTR ERV1 -556 78 1 23 78 0 0 chr1 35849179 35849230 -246344434 + AT_rich Low_complexity Low_complexity 1 51 0 2205 107 3 3 chr1 35849251 35849561 -246344103 + AluSp SINE Alu 1 310 -3 379 253 86 52 chr1 35849963 35850137 -246343527 - Charlie8 DNA MER1_type -2132 285 106 2121 110 3 0 chr1 35850217 35850517 -246343147 + AluSg1 SINE Alu 1 301 -8 1398 170 23 4 chr1 35850817 35851082 -246342582 + AluJb SINE Alu 37 306 -6 2216 79 0 20 chr1 35851175 35851478 -246342186 - AluY SINE Alu -14 297 1 888 152 0 0 chr1 35851495 35851627 -246342037 - FLAM_C SINE Alu 0 133 2 220 328 0 0 chr1 35851904 35851965 -246341699 + MIR3 SINE MIR 121 181 -27 2226 98 0 0 chr1 35852057 35852352 -246341312 + AluSq SINE Alu 1 295 -18 2230 86 3 0 chr1 35852426 35852718 -246340946 + AluSp SINE Alu 1 293 -20 1897 96 0 8 chr1 35852947 35853208 -246340456 - AluSc SINE Alu -17 292 34 1141 74 0 0 chr1 35853209 35853357 -246340307 + AluSg/x SINE Alu 145 292 -20 609 14 0 0 chr1 35853363 35853433 -246340231 + (TATAA)n Simple_repeat Simple_repeat 3 72 0 1265 40 7 0 chr1 35853482 35853632 -246340032 + MER4E LTR ERV1 1 151 -615 2142 102 10 0 chr1 35853632 35853926 -246339738 - AluSx SINE Alu -15 297 1 1351 180 70 0 chr1 35853926 35854097 -246339567 - AluJo SINE Alu -21 291 93 4897 85 19 27 chr1 35854097 35854790 -246338874 - LTR8 LTR ERV1 0 691 5 1351 180 70 0 chr1 35854790 35854890 -246338774 - AluJo SINE Alu -219 93 1 1824 104 7 7 chr1 35855176 35855446 -246338218 + AluSx SINE Alu 1 270 -42 1507 142 12 4 chr1 35855667 35855921 -246337743 - AluSx SINE Alu -17 295 40 1778 116 11 35 chr1 35855930 35856214 -246337450 - AluSx SINE Alu -33 279 3 189 0 0 0 chr1 35856423 35856444 -246337220 + (ATG)n Simple_repeat Simple_repeat 2 22 0 2055 78 18 0 chr1 35856449 35856731 -246336933 - AluY SINE Alu -24 287 1 455 122 17 211 chr1 35856830 35857010 -246336654 - Charlie5 DNA MER1_type -27 2585 2480 1876 121 3 24 chr1 35857111 35857279 -246336385 - AluSx SINE Alu -13 299 138 1780 134 17 14 chr1 35857279 35857436 -246336228 - AluSx SINE Alu -21 291 131 2107 120 0 0 chr1 35857436 35857745 -246335919 - AluY SINE Alu -2 309 1 1780 134 17 14 chr1 35857745 35857877 -246335787 - AluSx SINE Alu -181 131 1 1876 121 3 24 chr1 35857877 35858005 -246335659 - AluSx SINE Alu -174 138 9 1963 108 4 0 chr1 35858017 35858296 -246335368 - AluSg SINE Alu -9 301 22 343 238 0 0 chr1 35858522 35858585 -246335079 - AluJ/FLAM SINE Alu -239 63 1 2313 81 0 0 chr1 35858724 35859020 -246334644 - AluSc SINE Alu -13 296 1 248 214 43 57 chr1 35859097 35859167 -246334497 - L2 LINE L2 -1 3271 3203 1551 105 27 27 chr1 35859191 35859448 -246334216 + AluSg1 SINE Alu 53 309 0 2193 71 10 7 chr1 35859457 35859752 -246333912 + AluSc SINE Alu 1 296 -13 1803 86 71 0 chr1 35859812 35860081 -246333583 + AluY SINE Alu 1 288 -23 274 138 169 15 chr1 35860144 35860209 -246333455 - HsTC2 DNA Tc2 -1821 77 3 465 305 90 11 chr1 35860338 35860515 -246333149 - MIR SINE MIR -50 212 22 1924 96 56 0 chr1 35860559 35860879 -246332785 + AluSx SINE Alu 2 336 0 224 319 69 0 chr1 35860894 35860966 -246332698 - L2 LINE L2 -299 2973 2897 2143 95 14 3 chr1 35861023 35861319 -246332345 - AluSc SINE Alu -10 299 1 2301 87 0 3 chr1 35861337 35861637 -246332027 - AluSq SINE Alu -14 299 1 451 240 156 7 chr1 35861853 35862007 -246331657 + MIR SINE MIR 22 198 -64 1097 165 142 0 chr1 35862441 35862695 -246330969 - MER33 DNA MER1_type -25 299 10 898 123 14 0 chr1 35863565 35863703 -246329961 + FLAM_C SINE Alu 1 140 -3 1896 138 10 10 chr1 35864782 35865094 -246328570 + AluSx SINE Alu 1 312 0 1959 92 60 3 chr1 35865429 35865711 -246327953 - AluSc SINE Alu -11 298 1 2178 105 0 0 chr1 35865930 35866224 -246327440 - AluSg SINE Alu -16 294 1 808 164 16 55 chr1 35866262 35866445 -246327219 - AluSg/x SINE Alu 0 310 135 210 105 0 0 chr1 35868343 35868381 -246325283 + (A)n Simple_repeat Simple_repeat 1 38 0 378 191 66 103 chr1 35869161 35869297 -246324367 - MER58B DNA MER1_type -29 312 182 2180 111 0 0 chr1 35869408 35869705 -246323959 - AluSx SINE Alu -15 297 1 1121 159 264 65 chr1 35869713 35869831 -246323833 + L1MB7 LINE L1 5708 5801 -383 1895 161 3 0 chr1 35869831 35870142 -246323522 + AluSx SINE Alu 1 312 0 1121 159 264 65 chr1 35870142 35870183 -246323481 + L1MB7 LINE L1 5801 5833 -351 2085 95 21 0 chr1 35870183 35870467 -246323197 + AluSq SINE Alu 1 290 -23 1121 159 264 65 chr1 35870467 35870658 -246323006 + L1MB7 LINE L1 5833 6129 -55 1076 270 117 61 chr1 35870977 35871678 -246321986 - MER21B LTR ERV1 -123 740 1 1011 139 0 23 chr1 35871763 35871936 -246321728 - AluJo SINE Alu -20 292 124 2212 96 0 22 chr1 35872076 35872389 -246321275 - AluSq SINE Alu -7 306 1 880 188 0 0 chr1 35872517 35872666 -246320998 - AluJo/FRAM SINE Alu -10 302 154 1258 183 17 0 chr1 35872668 35872903 -246320761 - AluJb SINE Alu -73 239 1 2447 60 0 0 chr1 35872922 35873223 -246320441 - AluY SINE Alu -9 302 2 1076 168 5 5 chr1 35874974 35875159 -246318505 - AluSg/x SINE Alu -22 290 106 512 207 63 18 chr1 35875181 35875292 -246318372 - FLAM_A SINE Alu -17 116 1 1643 132 0 0 chr1 35875332 35875574 -246318090 - AluSg SINE Alu -68 242 1 1086 147 0 0 chr1 35876140 35876317 -246317347 + AluSp SINE Alu 137 313 0 717 30 160 0 chr1 35876406 35876506 -246317158 + MER85 DNA T2_type 24 139 0 657 175 0 0 chr1 35876704 35876801 -246316863 - AluS SINE Alu -215 98 2 2369 69 0 3 chr1 35876964 35877267 -246316397 - AluY SINE Alu -8 303 2 1746 193 52 0 chr1 35878851 35879178 -246314486 - MER2 DNA MER2_type 0 344 1 3986 167 53 65 chr1 35879223 35880189 -246313475 - LTR13 LTR ERVK 0 954 1 2233 77 10 3 chr1 35880220 35880517 -246313147 + AluSx SINE Alu 1 299 -13 258 312 47 44 chr1 35880979 35881123 -246312541 + MIR SINE MIR 8 152 -56 21 0 0 0 chr1 35881133 35881154 -246312510 + AT_rich Low_complexity Low_complexity 1 21 0 2077 115 0 16 chr1 35881180 35881348 -246312316 - AluSx SINE Alu -11 301 139 2436 57 0 0 chr1 35881348 35881646 -246312018 - AluY SINE Alu -13 298 1 2077 115 0 16 chr1 35881646 35881782 -246311882 - AluSx SINE Alu -173 139 2 1432 162 42 32 chr1 35881811 35881954 -246311710 - AluJo SINE Alu -25 287 147 2186 88 0 7 chr1 35881954 35882251 -246311413 - AluSq SINE Alu -18 295 1 1432 162 42 32 chr1 35882251 35882391 -246311273 - AluJo SINE Alu -165 147 1 262 204 21 86 chr1 35883213 35883306 -246310358 - MIR SINE MIR -75 133 47 2449 47 0 0 chr1 35883383 35883679 -246309985 + AluY SINE Alu 1 296 -15 1633 161 31 3 chr1 35883691 35883983 -246309681 + AluSg SINE Alu 1 300 -10 1833 164 0 16 chr1 35884157 35884474 -246309190 + AluJo SINE Alu 1 312 0 2242 102 0 0 chr1 35884771 35885076 -246308588 - AluSc SINE Alu -3 306 2 195 69 0 0 chr1 35885099 35885128 -246308536 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 886 94 11 171 chr1 35885199 35885271 -246308393 + AluJo SINE Alu 72 154 -158 1524 139 19 104 chr1 35885271 35885580 -246308084 + AluJo SINE Alu 1 283 -29 198 0 0 0 chr1 35885580 35885602 -246308062 + (CAAT)n Simple_repeat Simple_repeat 2 23 0 886 94 11 171 chr1 35885602 35885709 -246307955 + AluJo SINE Alu 152 223 -89 2102 123 19 7 chr1 35885755 35886063 -246307601 + AluSx SINE Alu 1 312 0 1971 167 3 0 chr1 35886100 35886411 -246307253 + AluJo SINE Alu 1 312 0 22 0 0 0 chr1 35886919 35886941 -246306723 + AT_rich Low_complexity Low_complexity 1 22 0 2274 94 0 13 chr1 35887235 35887533 -246306131 + AluSq SINE Alu 1 294 -19 2128 125 0 34 chr1 35887534 35887854 -246305810 + AluSg SINE Alu 2 310 0 1437 171 33 22 chr1 35888042 35888316 -246305348 + AluJo SINE Alu 5 281 -31 575 144 42 17 chr1 35888326 35888444 -246305220 - L1MB3 LINE L1 -7 6176 6056 2357 72 0 10 chr1 35888460 35888752 -246304912 - AluY SINE Alu -22 289 1 2138 126 7 7 chr1 35888833 35889134 -246304530 + AluSg SINE Alu 1 301 -9 22 56 0 0 chr1 35890182 35890218 -246303446 + AT_rich Low_complexity Low_complexity 1 36 0 2122 92 61 3 chr1 35890284 35890579 -246303085 + AluSx SINE Alu 1 312 0 1298 130 5 5 chr1 35890667 35890852 -246302812 - AluSg/x SINE Alu -22 290 106 502 198 63 18 chr1 35890874 35890985 -246302679 - FLAM_A SINE Alu -17 116 1 1873 116 0 0 chr1 35891025 35891267 -246302397 - AluSg SINE Alu -68 242 1 1160 140 0 11 chr1 35891833 35892011 -246301653 + AluSp SINE Alu 137 312 -1 672 30 160 0 chr1 35892100 35892200 -246301464 + MER85 DNA T2_type 24 139 0 631 175 0 0 chr1 35892398 35892495 -246301169 - AluS SINE Alu -215 98 2 2253 120 0 3 chr1 35892658 35892959 -246300705 - AluSg SINE Alu -9 301 2 1652 193 52 0 chr1 35894543 35894870 -246298794 - MER2 DNA MER2_type 0 344 1 3765 178 42 55 chr1 35894915 35895881 -246297783 - LTR13 LTR ERVK 0 954 1 2374 81 10 3 chr1 35895912 35896209 -246297455 + AluSx SINE Alu 1 299 -13 241 322 70 35 chr1 35896700 35896815 -246296849 + MIR SINE MIR 34 152 -56 21 0 0 0 chr1 35896825 35896846 -246296818 + AT_rich Low_complexity Low_complexity 1 21 0 2212 133 0 0 chr1 35896872 35897173 -246296491 - AluSx SINE Alu -11 301 1 435 224 78 0 chr1 35897456 35897572 -246296092 + Tigger1 DNA MER2_type 26 150 -2268 672 81 0 0 chr1 35897590 35897689 -246295975 + Tigger1 DNA MER2_type 2209 2307 -111 2315 126 0 0 chr1 35897818 35898127 -246295537 + AluSg SINE Alu 1 309 -1 417 211 22 0 chr1 35898319 35898409 -246295255 + HY4 scRNA scRNA 1 92 -1 1926 55 0 47 chr1 35898409 35898663 -246295001 + AluY SINE Alu 69 310 -1 2434 78 0 0 chr1 35898692 35898986 -246294678 + AluY SINE Alu 1 294 -17 580 129 0 0 chr1 35899032 35899117 -246294547 + AluJb SINE Alu 204 288 -24 517 214 129 28 chr1 35899269 35899447 -246294217 - L1ME3 LINE L1 -9 6153 5958 29 0 0 0 chr1 35899500 35899529 -246294135 + AT_rich Low_complexity Low_complexity 1 29 0 1233 102 11 27 chr1 35899552 35899738 -246293926 - AluSg/x SINE Alu 0 312 130 1953 151 0 0 chr1 35899839 35900117 -246293547 + AluSx SINE Alu 24 301 -11 2232 116 0 0 chr1 35900137 35900438 -246293226 - AluSx SINE Alu -11 301 1 1085 269 134 31 chr1 35900460 35900847 -246292817 - L1MCa LINE L1 -4574 2033 1687 1710 178 24 10 chr1 35900847 35901145 -246292519 - AluJb SINE Alu -10 302 1 1085 269 134 31 chr1 35901145 35901576 -246292088 - L1MCa LINE L1 -4920 1687 1302 2298 78 35 0 chr1 35901576 35901897 -246291767 - AluY SINE Alu 0 311 1 1085 269 134 31 chr1 35901897 35901978 -246291686 - L1MCa LINE L1 -5305 1302 875 2225 99 7 0 chr1 35902653 35902979 -246290685 - AluSp SINE Alu 0 328 1 2220 118 0 0 chr1 35902986 35903273 -246290391 - AluSg SINE Alu -23 287 1 2361 80 3 0 chr1 35903335 35903624 -246290040 - AluSg SINE Alu -20 290 1 2087 129 3 7 chr1 35903701 35903995 -246289669 + AluSg1 SINE Alu 1 293 -16 2506 77 0 6 chr1 35903996 35904308 -246289356 + AluY SINE Alu 1 310 -1 1095 86 0 0 chr1 35904337 35904476 -246289188 - AluSc SINE Alu -9 300 162 430 272 11 0 chr1 35905758 35905850 -246287814 + MER45 DNA AcHobo 1 93 -1488 2194 98 0 20 chr1 35905852 35906011 -246287653 - AluSg1 SINE Alu -19 290 138 2434 92 3 0 chr1 35906011 35906316 -246287348 - AluSp SINE Alu -7 306 1 2194 98 0 20 chr1 35906316 35906452 -246287212 - AluSg1 SINE Alu -171 138 1 1245 165 3 123 chr1 35906452 35906786 -246286878 - AluSx SINE Alu -7 295 2 2259 113 0 0 chr1 35906789 35907090 -246286574 - AluSx SINE Alu -10 302 2 282 209 23 39 chr1 35908602 35908731 -246284933 + (CCCCG)n Simple_repeat Simple_repeat 2 128 0 37 109 0 0 chr1 35908741 35908897 -246284767 + GC_rich Low_complexity Low_complexity 1 156 0 22 70 0 0 chr1 35908974 35909017 -246284647 + GC_rich Low_complexity Low_complexity 1 43 0 189 192 0 77 chr1 35911284 35911336 -246282328 - MIR SINE MIR -69 139 92 269 153 153 0 chr1 35911407 35911479 -246282185 - MIR3 SINE MIR -25 183 101 2204 114 16 3 chr1 35911717 35912023 -246281641 + AluSx SINE Alu 1 310 -2 2009 130 23 13 chr1 35912151 35912458 -246281206 + AluSg SINE Alu 1 310 0 2273 112 7 0 chr1 35912461 35912766 -246280898 + AluSc SINE Alu 3 309 0 2478 128 26 20 chr1 35912766 35913048 -246280616 + L1P4 LINE L1 5319 5607 -559 2090 119 26 3 chr1 35913048 35913351 -246280313 + AluSp SINE Alu 1 310 -3 2478 128 26 20 chr1 35913351 35913522 -246280142 + L1P4 LINE L1 5607 5775 -391 1698 192 0 13 chr1 35913529 35913831 -246279833 + AluJb SINE Alu 1 298 -14 1384 137 28 39 chr1 35913965 35914252 -246279412 + AluSx SINE Alu 40 312 0 715 212 34 0 chr1 35914253 35914399 -246279265 + AluJo/FRAM SINE Alu 138 288 -14 371 290 85 14 chr1 35914617 35914772 -246278892 + L1MC/D LINE L1 5490 5653 -484 255 270 212 0 chr1 35914792 35914929 -246278735 + L1MC/D LINE L1 5721 5886 -1922 2156 120 3 16 chr1 35915074 35915382 -246278282 - AluSq SINE Alu -9 304 1 210 288 25 0 chr1 35915438 35915518 -246278146 + (TA)n Simple_repeat Simple_repeat 1 82 0 300 280 54 32 chr1 35915518 35915611 -246278053 - L1MC4 LINE L1 -1333 6709 6615 390 280 32 0 chr1 35915639 35915796 -246277868 + (TA)n Simple_repeat Simple_repeat 1 162 0 1985 102 0 4 chr1 35915854 35916108 -246277556 + AluSx SINE Alu 50 302 -10 466 200 96 78 chr1 35916264 35916494 -246277170 - MER106A DNA MER1_type -1 235 2 2140 118 10 0 chr1 35916506 35916795 -246276869 + AluSx SINE Alu 5 296 -16 2081 152 0 0 chr1 35917358 35917661 -246276003 - AluSx SINE Alu -9 303 1 208 280 0 27 chr1 35917816 35917891 -246275773 + A-rich Low_complexity Low_complexity 2 74 0 2282 115 3 0 chr1 35918003 35918308 -246275356 + AluSx SINE Alu 1 306 -6 1024 121 0 42 chr1 35918311 35918477 -246275187 + AluSg/x SINE Alu 152 310 0 219 283 0 50 chr1 35918479 35918539 -246275125 - MIR SINE MIR -155 107 51 701 239 25 6 chr1 35918636 35918799 -246274865 + MER5A DNA MER1_type 24 189 0 1653 163 58 11 chr1 35919378 35919655 -246274009 + AluJo SINE Alu 1 290 -22 2292 101 0 25 chr1 35919660 35919977 -246273687 + AluSq SINE Alu 1 309 -4 1810 151 0 17 chr1 35920265 35920564 -246273100 - AluJb SINE Alu -18 294 1 2505 74 3 0 chr1 35920697 35921007 -246272657 + AluY SINE Alu 1 311 0 2337 77 7 16 chr1 35921808 35922118 -246271546 + AluSq SINE Alu 1 307 -6 2364 82 10 0 chr1 35922118 35922411 -246271253 + AluSq SINE Alu 1 296 -17 2254 125 3 0 chr1 35922421 35922716 -246270948 + AluSp SINE Alu 2 297 -16 2231 107 0 3 chr1 35922772 35923063 -246270601 - AluY SINE Alu -20 291 2 356 275 124 43 chr1 35923064 35923297 -246270367 - L1ME LINE L1 -349 5772 5521 2317 82 3 17 chr1 35923302 35923596 -246270068 + AluSp SINE Alu 1 290 -23 21 57 0 0 chr1 35924887 35924922 -246268742 + AT_rich Low_complexity Low_complexity 1 35 0 319 194 45 0 chr1 35930174 35930241 -246263423 + MER103 DNA DNA 3 72 -94 319 255 112 58 chr1 35930275 35930477 -246263187 - MIR SINE MIR 0 262 37 2511 63 0 13 chr1 35930477 35930780 -246262884 - AluY SINE Alu -12 299 1 1923 135 35 3 chr1 35931155 35931437 -246262227 - AluSq SINE Alu -22 291 1 234 267 103 35 chr1 35931495 35931611 -246262053 - MIR3 SINE MIR -27 181 58 186 103 0 0 chr1 35931755 35931784 -246261880 + (GGGGA)n Simple_repeat Simple_repeat 2 30 0 309 242 39 112 chr1 35933188 35933366 -246260298 - MIR3 SINE MIR -20 188 24 2217 115 0 16 chr1 35934987 35935291 -246258373 + AluSx SINE Alu 9 307 -5 325 221 48 58 chr1 35935357 35935461 -246258203 + L2 LINE L2 3211 3313 0 1526 192 4 4 chr1 35935591 35935857 -246257807 + AluJb SINE Alu 1 266 -46 2416 90 7 7 chr1 35935878 35936188 -246257476 + AluSx SINE Alu 1 310 -2 618 234 78 6 chr1 35936193 35936440 -246257224 - L2 LINE L2 -277 3036 2774 2265 115 0 10 chr1 35936468 35936773 -246256891 + AluSx SINE Alu 1 302 -10 607 113 0 0 chr1 35936783 35936863 -246256801 + AluS SINE Alu 7 86 -226 2310 92 0 13 chr1 35936864 35937168 -246256496 + AluSg SINE Alu 1 300 -10 684 159 0 0 chr1 35937186 35937299 -246256365 + FRAM SINE Alu 62 174 -2 346 272 43 68 chr1 35937640 35937802 -246255862 - MIR SINE MIR -84 178 21 210 307 148 11 chr1 35937985 35938073 -246255591 - L2 LINE L2 -17 3255 3156 180 255 0 0 chr1 35938511 35938558 -246255106 - MIR SINE MIR -78 130 84 2309 97 0 0 chr1 35938863 35939163 -246254501 + AluSg SINE Alu 1 300 -10 270 300 0 11 chr1 35939869 35939959 -246253705 - MIR SINE MIR -116 146 58 270 273 223 7 chr1 35940427 35940568 -246253096 + MIR SINE MIR 15 188 -63 330 233 21 11 chr1 35940603 35940705 -246252959 - MIR SINE MIR -103 105 10 359 269 43 28 chr1 35940900 35941041 -246252623 + MIR3 SINE MIR 36 178 -30 563 268 31 36 chr1 35941925 35942119 -246251545 + MIR SINE MIR 15 207 -55 2263 120 0 0 chr1 35942766 35943065 -246250599 - AluSq SINE Alu -14 299 1 1770 152 9 47 chr1 35943067 35943389 -246250275 - AluJb SINE Alu -2 310 1 254 204 56 0 chr1 35944078 35944132 -246249532 + MIR SINE MIR 87 143 -65 184 283 59 86 chr1 35944136 35944323 -246249341 - MIR3 SINE MIR -20 188 7 214 242 15 15 chr1 35944807 35944873 -246248791 + G-rich Low_complexity Low_complexity 6 71 0 21 36 0 0 chr1 35945707 35945735 -246247929 + GC_rich Low_complexity Low_complexity 1 28 0 363 186 70 0 chr1 35946155 35946241 -246247423 - MIR SINE MIR -14 248 157 1603 96 9 0 chr1 35946243 35946461 -246247203 - AluSg/x SINE Alu -3 307 88 2260 95 11 0 chr1 35946584 35946894 -246246770 + AluSq SINE Alu 1 313 0 1072 112 39 22 chr1 35946894 35947073 -246246591 + AluSg/x SINE Alu 131 312 0 2241 112 7 0 chr1 35947076 35947381 -246246283 + AluSc SINE Alu 3 309 0 2704 117 26 20 chr1 35947381 35947664 -246246000 + L1P4 LINE L1 5318 5607 -559 2129 116 26 0 chr1 35947664 35947967 -246245697 + AluSp SINE Alu 1 311 -2 2704 117 26 20 chr1 35947967 35948138 -246245526 + L1P4 LINE L1 5607 5775 -391 1647 192 0 13 chr1 35948145 35948447 -246245217 + AluJb SINE Alu 1 298 -14 1359 138 28 36 chr1 35948581 35948866 -246244798 + AluSx SINE Alu 40 312 0 740 212 34 0 chr1 35948867 35949013 -246244651 + AluJo/FRAM SINE Alu 138 288 -14 382 283 87 14 chr1 35949231 35949369 -246244295 + L1ME4a LINE L1 5490 5637 -484 273 268 197 22 chr1 35949406 35949589 -246244075 + L1ME4a LINE L1 5721 5937 -184 2108 119 3 16 chr1 35949688 35949991 -246243673 - AluSq SINE Alu -14 299 1 408 226 41 0 chr1 35950110 35950411 -246243253 + (TA)n Simple_repeat Simple_repeat 1 313 0 1952 102 0 4 chr1 35950469 35950723 -246242941 + AluSx SINE Alu 50 302 -10 520 200 96 78 chr1 35950879 35951109 -246242555 - MER106A DNA MER1_type -1 235 2 2167 107 10 0 chr1 35951121 35951410 -246242254 + AluSx SINE Alu 5 296 -16 2114 111 3 41 chr1 35951973 35952288 -246241376 - AluSx SINE Alu -9 303 1 1687 159 10 34 chr1 35952300 35952596 -246241068 - AluJo SINE Alu -23 289 1 244 329 79 0 chr1 35953023 35953163 -246240501 + MIR3 SINE MIR 30 180 -28 1210 194 49 74 chr1 35953237 35953502 -246240162 - MER58B DNA MER1_type -2079 341 86 2240 119 3 0 chr1 35953502 35953813 -246239851 + AluSx SINE Alu 1 312 0 1210 194 49 74 chr1 35953813 35953897 -246239767 - MER58B DNA MER1_type -2334 86 1 1695 112 50 8 chr1 35953919 35954178 -246239486 - Tigger3(Golem) DNA MER2_type 0 3029 2760 1131 104 0 0 chr1 35954178 35954322 -246239342 + AluSq/x SINE Alu 1 144 -168 1611 129 0 4 chr1 35954422 35954654 -246239010 + AluSg/x SINE Alu 78 308 -2 1122 164 29 24 chr1 35954674 35954714 -246238950 + AluJb SINE Alu 98 136 -176 2283 117 0 3 chr1 35954714 35955021 -246238643 + AluSx SINE Alu 1 306 -6 1122 164 29 24 chr1 35955021 35955188 -246238476 + AluJb SINE Alu 136 306 -6 1360 201 75 11 chr1 35955192 35955471 -246238193 + AluJo SINE Alu 3 299 -13 2826 139 26 83 chr1 35955471 35955910 -246237754 + L1MB3 LINE L1 5606 6069 -114 633 231 8 8 chr1 35955910 35956040 -246237624 + FLAM_A SINE Alu 4 133 0 2826 139 26 83 chr1 35956040 35956141 -246237523 + L1MB3 LINE L1 6069 6110 -73 2450 87 0 0 chr1 35956141 35956439 -246237225 - AluSq SINE Alu -15 298 1 2826 139 26 83 chr1 35956439 35956508 -246237156 + L1MB3 LINE L1 6110 6181 -2 2155 199 42 58 chr1 35956522 35956636 -246237028 + L1ME1 LINE L1 5471 5585 -581 2491 59 23 0 chr1 35956636 35956940 -246236724 - AluY SINE Alu 0 311 1 2155 199 42 58 chr1 35956940 35957398 -246236266 + L1ME1 LINE L1 5585 6034 -132 1316 34 0 0 chr1 35957416 35957562 -246236102 - AluSp/q SINE Alu -12 301 156 428 143 0 0 chr1 35957688 35957751 -246235913 - AluJ/FLAM SINE Alu -238 74 12 840 155 8 0 chr1 35957793 35957922 -246235742 + AluSq/x SINE Alu 4 133 -180 2298 100 0 7 chr1 35957925 35958226 -246235438 + AluSx SINE Alu 1 299 -13 1831 83 120 26 chr1 35958253 35958388 -246235276 + AluY SINE Alu 1 122 -189 2085 124 17 0 chr1 35958388 35958679 -246234985 + AluSp SINE Alu 1 296 -17 1831 83 120 26 chr1 35958679 35958835 -246234829 + AluY SINE Alu 122 311 0 2629 186 116 104 chr1 35958852 35959245 -246234419 + L1MC/D LINE L1 4122 4509 -1686 1973 153 0 3 chr1 35959245 35959545 -246234119 + AluSx SINE Alu 1 299 -13 2629 186 116 104 chr1 35959545 35959870 -246233794 + L1MC/D LINE L1 4509 4829 -1366 306 0 0 0 chr1 35959870 35959904 -246233760 + (TG)n Simple_repeat Simple_repeat 2 35 0 276 30 0 0 chr1 35959903 35959936 -246233728 + (TA)n Simple_repeat Simple_repeat 1 33 0 * 2629 186 116 104 chr1 35959904 35959937 -246233727 + L1MC/D LINE L1 4829 4860 -1335 1682 153 35 21 chr1 35959937 35960219 -246233445 - AluJb SINE Alu -6 306 21 2629 186 116 104 chr1 35960219 35960389 -246233275 + L1MC/D LINE L1 4860 5027 -1168 2372 91 3 0 chr1 35960389 35960686 -246232978 - AluSp SINE Alu -7 306 9 2629 186 116 104 chr1 35960686 35960958 -246232706 + L1MC/D LINE L1 5027 5313 -882 2527 69 0 3 chr1 35960958 35961263 -246232401 - AluY SINE Alu -7 304 1 2629 186 116 104 chr1 35961263 35961405 -246232259 + L1MC/D LINE L1 5313 5452 -743 919 214 229 23 chr1 35961621 35961887 -246231777 - L2 LINE L2 -449 2865 2655 2273 140 9 6 chr1 35961887 35962230 -246231434 - MER2 DNA MER2_type 0 344 1 919 214 229 23 chr1 35962230 35962313 -246231351 - L2 LINE L2 -659 2655 2444 252 217 0 0 chr1 35962451 35962497 -246231167 - MIR SINE MIR -133 75 30 1857 139 33 13 chr1 35962499 35962800 -246230864 - AluJo SINE Alu -5 307 1 1868 131 53 0 chr1 35962929 35963211 -246230453 - AluSg SINE Alu -13 297 1 273 355 154 31 chr1 35963546 35963904 -246229760 - L2 LINE L2 0 3272 2871 301 259 154 35 chr1 35963963 35964091 -246229573 - MIR SINE MIR -36 226 115 1975 135 46 0 chr1 35964091 35964373 -246229291 - AluSx SINE Alu -17 295 1 301 259 154 35 chr1 35964373 35964445 -246229219 - MIR SINE MIR -147 115 2 804 159 19 125 chr1 35964532 35964717 -246228947 - MER5A DNA MER1_type 0 189 27 2237 101 0 44 chr1 35964717 35965033 -246228631 - AluSx SINE Alu -10 302 1 804 159 19 125 chr1 35965033 35965055 -246228609 - MER5A DNA MER1_type -162 27 4 386 285 79 47 chr1 35965237 35965472 -246228192 + MIR SINE MIR 17 261 -1 251 220 66 33 chr1 35965764 35965855 -246227809 + L1P LINE L1 5315 5408 -743 602 172 78 117 chr1 35966438 35966618 -246227046 - MIR SINE MIR -38 224 52 433 272 66 42 chr1 35966850 35967008 -246226656 - MIR SINE MIR -1 261 95 1830 130 33 4 chr1 35967008 35967284 -246226380 + AluJb SINE Alu 29 312 0 433 272 66 42 chr1 35967284 35967338 -246226326 - MIR SINE MIR -167 95 44 2277 94 10 0 chr1 35968086 35968385 -246225279 - AluSq SINE Alu -6 307 6 23 68 0 0 chr1 35968622 35968666 -246224998 + AT_rich Low_complexity Low_complexity 1 44 0 330 264 174 7 chr1 35968918 35969062 -246224602 + L1MEc LINE L1 37 204 -6192 720 228 70 21 chr1 35969094 35969335 -246224329 + L1MEc LINE L1 1615 1867 -4529 2454 74 7 0 chr1 35969337 35969636 -246224028 + AluSp SINE Alu 1 301 -12 756 215 7 0 chr1 35969667 35969811 -246223853 + FRAM SINE Alu 20 164 -12 744 167 70 87 chr1 35969816 35970115 -246223549 + L1MEc LINE L1 2072 2365 -4031 2200 119 3 7 chr1 35970128 35970430 -246223234 + AluSg SINE Alu 1 301 -9 2033 144 10 3 chr1 35970438 35970744 -246222920 + AluJb SINE Alu 1 308 -4 551 192 48 8 chr1 35970744 35970869 -246222795 + L1MEc LINE L1 3026 3155 -3060 428 174 283 0 chr1 35970872 35970964 -246222700 + FLAM_C SINE Alu 1 118 -15 858 161 45 19 chr1 35970970 35971125 -246222539 - FRAM SINE Alu -19 157 1 293 233 67 11 chr1 35971236 35971326 -246222338 + HAL1 LINE L1 2073 2167 -340 * 2466 208 19 95 chr1 35971301 35971376 -246222288 + L1MA8 LINE L1 5427 5506 -785 2103 136 3 3 chr1 35971376 35971684 -246221980 + AluSx SINE Alu 1 308 -4 2466 208 19 95 chr1 35971684 35972384 -246221280 + L1MA8 LINE L1 5506 6143 -148 1101 228 90 112 chr1 35972415 35972657 -246221007 + L1MC4 LINE L1 6914 7160 -882 2251 106 10 0 chr1 35972657 35972949 -246220715 - AluSq SINE Alu -18 295 1 1101 228 90 112 chr1 35972949 35973562 -246220102 + L1MC4 LINE L1 7160 7750 -292 24 32 0 0 chr1 35973562 35973593 -246220071 + AT_rich Low_complexity Low_complexity 1 31 0 728 252 148 13 chr1 35973661 35973979 -246219685 + L1ME4a LINE L1 5536 5896 -225 252 159 57 68 chr1 35974016 35974104 -246219560 + L1ME4a LINE L1 5973 6059 -62 679 361 30 12 chr1 35974104 35974148 -246219516 + L3 LINE CR1 1233 1275 -302 2225 99 26 0 chr1 35974148 35974452 -246219212 + AluSx SINE Alu 1 312 0 679 361 30 12 chr1 35974452 35974745 -246218919 + L3 LINE CR1 1275 1576 -1 265 289 258 21 chr1 35975587 35975777 -246217887 - MIR SINE MIR -26 236 2 1334 182 21 106 chr1 35976714 35977044 -246216620 - AluYb8 SINE Alu -16 302 1 1654 171 30 26 chr1 35978049 35978353 -246215311 + AluJo SINE Alu 1 305 -7 265 262 60 12 chr1 35978481 35978565 -246215099 - L2 LINE L2 -1352 1962 1875 22 80 0 13 chr1 35978784 35978796 -246214868 + AT_rich Low_complexity Low_complexity 1 12 -62 1517 194 20 3 chr1 35978796 35979089 -246214575 - AluJo SINE Alu -14 298 1 22 80 0 13 chr1 35979089 35979151 -246214513 + AT_rich Low_complexity Low_complexity 12 74 0 314 275 133 13 chr1 35979477 35979623 -246214041 - MIR SINE MIR -62 146 33 216 0 0 0 chr1 35980000 35980024 -246213640 + (A)n Simple_repeat Simple_repeat 1 24 0 2163 122 10 0 chr1 35980027 35980323 -246213341 + AluSx SINE Alu 1 299 -13 287 278 49 0 chr1 35980323 35980435 -246213229 - MIR SINE MIR -63 145 56 331 231 214 12 chr1 35980550 35980723 -246212941 - MIR SINE MIR -27 235 28 488 221 0 11 chr1 35980728 35980823 -246212841 + L1MC1 LINE L1 6180 6273 -60 701 288 213 17 chr1 35981842 35982245 -246211419 + L1MC4a LINE L1 5385 5866 -1942 418 284 18 71 chr1 35982747 35982916 -246210748 + MIR3 SINE MIR 16 175 -33 195 42 0 0 chr1 35982961 35982985 -246210679 + (TA)n Simple_repeat Simple_repeat 1 24 0 1172 188 4 4 chr1 35983028 35983257 -246210407 + AluJb SINE Alu 84 312 0 2498 56 0 26 chr1 35983586 35983891 -246209773 - AluY SINE Alu -14 297 1 284 330 45 0 chr1 35984681 35984793 -246208871 - MIR SINE MIR -134 128 12 213 328 62 0 chr1 35984805 35984869 -246208795 - MIR SINE MIR -162 100 33 1501 41 5 41 chr1 35985168 35985362 -246208302 - AluY SINE Alu -11 300 114 252 267 13 34 chr1 35985522 35985754 -246207910 + A-rich Low_complexity Low_complexity 1 226 0 672 165 0 0 chr1 35985765 35985880 -246207784 + AluSg/x SINE Alu 188 302 -10 453 36 0 0 chr1 35985886 35985941 -246207723 + (TG)n Simple_repeat Simple_repeat 2 56 0 2055 121 0 4 chr1 35985960 35986233 -246207431 + AluSx SINE Alu 2 273 -39 255 210 0 16 chr1 35986393 35986455 -246207209 + MIR3 SINE MIR 3 63 -145 181 261 43 0 chr1 35986653 35986699 -246206965 - L2 LINE L2 0 3313 3266 361 207 12 24 chr1 35986732 35986814 -246206850 - MIR3 SINE MIR -17 191 111 2261 106 10 0 chr1 35987727 35988030 -246205634 + AluSx SINE Alu 1 306 -6 2408 84 7 0 chr1 35988032 35988331 -246205333 + AluSq SINE Alu 1 301 -12 356 250 11 0 chr1 35989251 35989339 -246204325 + MIR SINE MIR 50 138 -70 432 313 157 30 chr1 35989626 35989888 -246203776 + L2 LINE L2 2978 3272 0 245 328 15 23 chr1 35990247 35990378 -246203286 - L2 LINE L2 -239 3033 2904 2082 100 0 75 chr1 35990532 35990708 -246202956 - AluSq SINE Alu -16 297 154 2228 105 0 16 chr1 35990708 35991013 -246202651 - AluSq SINE Alu -13 300 1 2082 100 0 75 chr1 35991013 35991157 -246202507 - AluSq SINE Alu -159 154 1 261 297 79 73 chr1 35991305 35991365 -246202299 - MIR3 SINE MIR -7 201 143 2284 91 37 0 chr1 35991365 35991661 -246202003 + AluSg SINE Alu 1 307 -3 261 297 79 73 chr1 35991661 35991765 -246201899 - MIR3 SINE MIR -65 143 36 233 330 57 28 chr1 35992118 35992224 -246201440 + L2 LINE L2 3204 3312 -1 * 254 214 180 0 chr1 35992223 35992312 -246201352 + MIR SINE MIR 79 183 -79 2623 64 0 3 chr1 35992580 35992892 -246200772 - AluY SINE Alu 0 311 1 504 247 31 25 chr1 35993086 35993248 -246200416 - MIR SINE MIR -41 221 59 2377 100 0 0 chr1 35993262 35993563 -246200101 - AluSg SINE Alu -9 301 1 2195 115 16 3 chr1 35993691 35993996 -246199668 - AluSx SINE Alu -3 309 1 269 153 153 0 chr1 35994234 35994306 -246199358 + MIR3 SINE MIR 101 183 -25 189 192 0 77 chr1 35994377 35994429 -246199235 + MIR SINE MIR 92 139 -69 22 70 0 0 chr1 35996696 35996739 -246196925 + GC_rich Low_complexity Low_complexity 1 43 0 38 108 0 0 chr1 35996816 35996973 -246196691 + GC_rich Low_complexity Low_complexity 1 157 0 282 209 23 39 chr1 35996983 35997112 -246196552 + (CGGGG)n Simple_repeat Simple_repeat 2 128 0 2267 113 7 3 chr1 35998620 35998922 -246194742 + AluSx SINE Alu 2 304 -8 1674 154 10 48 chr1 35998939 35999231 -246194433 + AluJb SINE Alu 1 281 -31 1585 183 30 8 chr1 35999410 35999678 -246193986 + AluJb SINE Alu 26 299 -13 916 143 148 123 chr1 35999678 35999793 -246193871 + Charlie1 DNA MER1_type 2165 2276 -485 2333 71 10 17 chr1 35999793 36000087 -246193577 + AluSx SINE Alu 1 292 -20 916 143 148 123 chr1 36000087 36000142 -246193522 + Charlie1 DNA MER1_type 2276 2328 -433 719 89 0 0 chr1 36000142 36000243 -246193421 - HY3 scRNA scRNA 0 101 1 916 143 148 123 chr1 36000243 36000419 -246193245 + Charlie1 DNA MER1_type 2328 2526 -235 1327 231 10 10 chr1 36000419 36000714 -246192950 - AluJo SINE Alu -15 297 3 916 143 148 123 chr1 36000714 36000756 -246192908 + Charlie1 DNA MER1_type 2526 2565 -196 546 176 0 88 chr1 36000777 36000872 -246192792 + FAM SINE Alu 1 6 -179 2201 137 0 10 chr1 36000872 36001178 -246192486 - AluSx SINE Alu -9 303 1 546 176 0 88 chr1 36001178 36001218 -246192446 + FAM SINE Alu 6 48 -1 637 185 23 17 chr1 36001219 36001257 -246192407 + Charlie1 DNA MER1_type 2555 2591 -170 1897 173 0 3 chr1 36001257 36001563 -246192101 - AluSx SINE Alu -7 305 1 637 185 23 17 chr1 36001563 36001697 -246191967 + Charlie1 DNA MER1_type 2591 2728 -33 1833 97 4 0 chr1 36001704 36001930 -246191734 + AluSc SINE Alu 1 227 -82 213 39 0 0 chr1 36001940 36001966 -246191698 + (A)n Simple_repeat Simple_repeat 1 26 0 23 54 0 0 chr1 36002020 36002057 -246191607 + AT_rich Low_complexity Low_complexity 1 37 0 1923 143 0 17 chr1 36002059 36002353 -246191311 + AluSx SINE Alu 3 291 -21 977 206 18 56 chr1 36002356 36002612 -246191052 - L1ME2 LINE L1 -16 6148 5903 2134 110 7 17 chr1 36002612 36002911 -246190753 - AluSg SINE Alu -14 296 1 977 206 18 56 chr1 36002911 36002940 -246190724 - L1ME2 LINE L1 -261 5903 5874 2426 177 103 21 chr1 36002943 36003469 -246190195 - MER67B LTR ERV1 0 661 93 256 160 20 0 chr1 36003610 36003660 -246190004 - Alu SINE Alu -248 51 1 2511 51 10 0 chr1 36006067 36006362 -246187302 + AluSp SINE Alu 1 298 -15 315 0 0 0 chr1 36006362 36006397 -246187267 + (TG)n Simple_repeat Simple_repeat 2 36 0 439 100 0 29 chr1 36006397 36006467 -246187197 - AluJ/FRAM SINE Alu -25 287 220 202 311 0 0 chr1 36006474 36006535 -246187129 + MIR SINE MIR 62 122 -86 2392 89 7 3 chr1 36006763 36007067 -246186597 + AluSx SINE Alu 1 305 -7 2173 98 10 17 chr1 36007067 36007362 -246186302 + AluSx SINE Alu 1 293 -19 906 269 78 58 chr1 36007509 36007996 -246185668 - L1ME2 LINE L1 -2021 5787 5291 3029 122 64 12 chr1 36008054 36008553 -246185111 - MER1A DNA MER1_type 0 527 3 1275 157 0 0 chr1 36008565 36008756 -246184908 - AluSg/x SINE Alu -1 311 121 1241 86 11 75 chr1 36008770 36008956 -246184708 - AluSp SINE Alu -138 175 2 2314 112 0 10 chr1 36008959 36009272 -246184392 - AluSg SINE Alu 0 310 1 617 192 120 0 chr1 36009337 36009462 -246184202 + MER58C DNA MER1_type 33 172 -43 2359 83 0 17 chr1 36009463 36009764 -246183900 - AluSg SINE Alu -14 296 1 1923 135 35 3 chr1 36010139 36010421 -246183243 - AluSq SINE Alu -22 291 1 234 267 103 35 chr1 36010479 36010595 -246183069 - MIR3 SINE MIR -27 181 58 186 103 0 0 chr1 36010739 36010768 -246182896 + (GGGGA)n Simple_repeat Simple_repeat 2 30 0 309 242 39 112 chr1 36012171 36012349 -246181315 - MIR3 SINE MIR -20 188 24 2217 115 0 16 chr1 36013967 36014271 -246179393 + AluSx SINE Alu 9 307 -5 313 234 0 53 chr1 36014347 36014441 -246179223 + L2 LINE L2 3184 3272 0 1526 192 4 4 chr1 36014571 36014837 -246178827 + AluJb SINE Alu 1 266 -46 2371 93 7 7 chr1 36014858 36015168 -246178496 + AluSx SINE Alu 1 310 -2 569 244 78 6 chr1 36015173 36015420 -246178244 - L2 LINE L2 -277 3036 2774 1056 133 0 7 chr1 36015448 36015598 -246178066 + AluSx SINE Alu 1 149 -163 639 185 0 0 chr1 36015889 36016008 -246177656 - AluSq/x SINE Alu -192 120 2 208 280 0 27 chr1 36016164 36016239 -246177425 + A-rich Low_complexity Low_complexity 2 74 0 2290 114 3 0 chr1 36016350 36016656 -246177008 + AluSx SINE Alu 1 307 -5 1024 121 0 42 chr1 36016659 36016825 -246176839 + AluSx SINE Alu 154 312 0 219 283 0 50 chr1 36016827 36016887 -246176777 - MIR SINE MIR -155 107 51 701 239 25 6 chr1 36016984 36017147 -246176517 + MER5A DNA MER1_type 24 189 0 1653 163 58 11 chr1 36017726 36018003 -246175661 + AluJo SINE Alu 1 290 -22 2292 101 0 25 chr1 36018008 36018325 -246175339 + AluSq SINE Alu 1 309 -4 1810 151 0 17 chr1 36018613 36018912 -246174752 - AluJb SINE Alu -18 294 1 2564 65 3 0 chr1 36019045 36019355 -246174309 + AluY SINE Alu 1 311 0 186 354 31 0 chr1 36020054 36020119 -246173545 + L2 LINE L2 3117 3183 -89 2234 95 0 16 chr1 36020153 36020458 -246173206 + AluSx SINE Alu 1 300 -12 548 180 63 0 chr1 36020517 36020628 -246173036 - AluJb SINE Alu -193 119 2 2501 51 10 0 chr1 36023035 36023329 -246170335 + AluSp SINE Alu 1 297 -16 306 0 0 0 chr1 36023329 36023363 -246170301 + (TG)n Simple_repeat Simple_repeat 2 35 0 420 103 0 29 chr1 36023363 36023431 -246170233 - AluJ/FRAM SINE Alu -27 285 220 202 311 0 0 chr1 36023438 36023499 -246170165 + MIR SINE MIR 62 122 -86 2383 89 7 3 chr1 36023727 36024030 -246169634 + AluSx SINE Alu 1 304 -8 2365 81 0 17 chr1 36024030 36024326 -246169338 + AluSx SINE Alu 1 291 -21 911 274 79 57 chr1 36024436 36024979 -246168685 - L1ME LINE L1 -331 5831 5271 3035 123 64 10 chr1 36025018 36025516 -246168148 - MER1A DNA MER1_type 0 527 3 903 223 0 0 chr1 36025536 36025702 -246167962 - FRAM SINE Alu 0 166 1 1256 81 11 75 chr1 36025724 36025910 -246167754 - AluSp SINE Alu -138 175 2 2338 104 0 16 chr1 36025917 36026234 -246167430 - AluSx SINE Alu 0 312 1 2146 58 0 4 chr1 36026350 36026608 -246167056 + AluY SINE Alu 51 307 -4 1997 148 10 10 chr1 36026652 36026949 -246166715 - AluSx SINE Alu -15 297 1 318 235 141 0 chr1 36026959 36027044 -246166620 - L1ME3A LINE L1 -9 6161 6065 813 186 32 0 chr1 36027049 36027205 -246166459 + Charlie1a DNA MER1_type 6 166 -1289 633 147 0 78 chr1 36027211 36027340 -246166324 + FRAM SINE Alu 20 138 -38 347 150 0 50 chr1 36027356 36027436 -246166228 + AluJ/FRAM SINE Alu 227 302 0 1632 189 0 14 chr1 36027486 36027771 -246165893 - AluJo SINE Alu -31 281 1 2414 83 0 0 chr1 36027798 36028088 -246165576 - AluSc SINE Alu -19 290 1 30 0 0 0 chr1 36028091 36028121 -246165543 + AT_rich Low_complexity Low_complexity 1 30 0 1525 187 16 44 chr1 36028144 36028459 -246165205 + AluJo SINE Alu 3 308 -4 1135 150 85 98 chr1 36028483 36028522 -246165142 + AluJb SINE Alu 9 47 -265 4212 50 7 4 chr1 36028522 36029078 -246164586 + LTR6B LTR ERV1 1 558 0 1135 150 85 98 chr1 36029078 36029193 -246164471 + AluJb SINE Alu 47 162 -150 2098 91 0 4 chr1 36029193 36029458 -246164206 + AluSg SINE Alu 1 264 -46 1135 150 85 98 chr1 36029458 36029609 -246164055 + AluJb SINE Alu 162 311 -1 2300 106 0 7 chr1 36029614 36029917 -246163747 + AluSp SINE Alu 1 301 -12 2153 116 3 3 chr1 36029917 36030210 -246163454 + AluSx SINE Alu 1 293 -19 2405 65 0 7 chr1 36030219 36030511 -246163153 + AluSc SINE Alu 1 290 -19 2502 64 0 3 chr1 36030779 36031074 -246162590 - AluSx SINE Alu -18 294 1 431 324 85 21 chr1 36031074 36031355 -246162309 + L3 LINE CR1 613 911 -666 295 282 179 8 chr1 36031339 36031456 -246162208 - L2 LINE L2 -9 3263 3127 * 325 222 60 43 chr1 36031496 36031613 -246162051 + L1MCa LINE L1 2000 2118 -4308 2004 131 3 36 chr1 36031938 36032244 -246161420 + AluJo SINE Alu 2 297 -15 745 188 171 6 chr1 36032301 36032477 -246161187 + MER3 DNA MER1_type 5 209 0 2265 94 3 3 chr1 36032644 36032932 -246160732 + AluSg SINE Alu 1 288 -22 910 161 0 0 chr1 36033097 36033234 -246160430 + FLAM_C SINE Alu 1 137 -6 197 323 120 30 chr1 36033239 36033348 -246160316 - MIR SINE MIR -82 126 10 1700 145 59 38 chr1 36034148 36034437 -246159227 + AluJb SINE Alu 1 295 -17 842 130 0 36 chr1 36034678 36034816 -246158848 - FLAM_C SINE Alu 0 133 1 213 269 97 43 chr1 36036397 36036490 -246157174 - MIR SINE MIR -162 100 3 2581 73 0 3 chr1 36037213 36037526 -246156138 + AluSq SINE Alu 1 312 -1 2301 108 7 3 chr1 36037546 36037853 -246155811 + AluY SINE Alu 1 308 -3 365 261 42 34 chr1 36037979 36038098 -246155566 - L2 LINE L2 0 3313 3194 266 185 222 37 chr1 36038260 36038395 -246155269 - L1ME4a LINE L1 -1 6120 5961 638 233 0 63 chr1 36038448 36038607 -246155057 - FRAM SINE Alu -17 149 1 2371 119 0 0 chr1 36038612 36038924 -246154740 - AluSx SINE Alu 0 312 1 289 300 15 62 chr1 36039749 36039879 -246153785 - MER5A DNA MER1_type -4 185 62 1556 55 0 25 chr1 36039905 36040104 -246153560 - AluY SINE Alu -5 306 113 1856 121 35 14 chr1 36040205 36040512 -246153152 + AluSq SINE Alu 1 313 0 1094 112 39 22 chr1 36040512 36040691 -246152973 + AluSg/x SINE Alu 131 312 0 2238 118 7 0 chr1 36040694 36040999 -246152665 + AluSc SINE Alu 3 309 0 2531 121 26 18 chr1 36041000 36041283 -246152381 + L1P4 LINE L1 5317 5607 -559 2102 123 27 0 chr1 36041283 36041584 -246152080 + AluSp SINE Alu 1 309 -4 2531 121 26 18 chr1 36041584 36041755 -246151909 + L1P4 LINE L1 5607 5775 -391 1698 192 0 13 chr1 36041762 36042064 -246151600 + AluJb SINE Alu 1 298 -14 1513 137 26 26 chr1 36042198 36042468 -246151196 + AluSx SINE Alu 40 309 -3 715 212 34 0 chr1 36042469 36042615 -246151049 + AluJo/FRAM SINE Alu 138 288 -14 371 290 85 14 chr1 36042833 36042988 -246150676 + L1MC/D LINE L1 5490 5653 -484 255 270 212 0 chr1 36043008 36043145 -246150519 + L1MC/D LINE L1 5721 5886 -1922 2198 114 3 13 chr1 36043290 36043597 -246150067 - AluSq SINE Alu -9 304 1 289 300 15 62 chr1 36044422 36044552 -246149112 - MER5A DNA MER1_type -4 185 62 2514 67 0 19 chr1 36044578 36044890 -246148774 - AluY SINE Alu -5 306 1 189 0 0 0 chr1 36044914 36044935 -246148729 + (A)n Simple_repeat Simple_repeat 1 21 0 2295 91 3 0 chr1 36044940 36045226 -246148438 + AluSq SINE Alu 7 293 -20 2378 100 0 3 chr1 36045227 36045528 -246148136 + AluSx SINE Alu 1 300 -12 231 216 20 0 chr1 36045528 36045579 -246148085 - MER5A DNA MER1_type -61 128 77 373 246 181 47 chr1 36045771 36045986 -246147678 + L1ME LINE L1 5580 5823 -298 1600 195 0 4 chr1 36046002 36046264 -246147400 + AluJb SINE Alu 12 272 -40 1367 207 7 29 chr1 36046276 36046387 -246147277 + AluJo SINE Alu 27 139 -173 2285 78 11 3 chr1 36046387 36046697 -246146967 + AluSp SINE Alu 2 313 0 1367 207 7 29 chr1 36046697 36046859 -246146805 + AluJo SINE Alu 139 295 -17 1669 165 34 0 chr1 36047016 36047282 -246146382 - AluJb SINE Alu -37 275 1 2396 70 0 17 chr1 36047305 36047603 -246146061 + AluY SINE Alu 3 295 -16 1776 149 11 8 chr1 36047692 36047954 -246145710 + AluJb SINE Alu 6 268 -44 622 97 53 26 chr1 36049096 36049210 -246144454 + MER47A DNA MER2_type 45 161 -205 1069 168 40 15 chr1 36049231 36049433 -246144231 + AluSp SINE Alu 1 207 -106 22 70 0 0 chr1 36049917 36049960 -246143704 + GC_rich Low_complexity Low_complexity 1 43 0 37 109 0 0 chr1 36050037 36050193 -246143471 + GC_rich Low_complexity Low_complexity 1 156 0 282 209 23 39 chr1 36050203 36050332 -246143332 + (CGGGG)n Simple_repeat Simple_repeat 2 128 0 1881 89 20 0 chr1 36050858 36051104 -246142560 + AluSq SINE Alu 53 303 -10 2412 73 39 25 chr1 36051104 36051439 -246142225 + MER4D LTR ERV1 511 853 -19 2085 145 0 3 chr1 36051439 36051735 -246141929 - AluSx SINE Alu -17 295 1 2412 73 39 25 chr1 36051735 36051756 -246141908 + MER4D LTR ERV1 853 872 0 348 309 233 37 chr1 36051769 36052507 -246141157 + L2 LINE L2 1753 2676 -638 2116 141 3 0 chr1 36052507 36052805 -246140859 - AluSx SINE Alu -13 299 1 348 309 233 37 chr1 36052805 36052904 -246140760 + L2 LINE L2 2676 2754 -560 2195 114 3 16 chr1 36053183 36053491 -246140173 + AluSq SINE Alu 1 304 -9 2005 170 45 2 chr1 36053623 36053943 -246139721 + L1MB7 LINE L1 5728 6072 -112 2562 53 0 0 chr1 36053943 36054245 -246139419 + AluY SINE Alu 1 302 -9 2005 170 45 2 chr1 36054245 36054348 -246139316 + L1MB7 LINE L1 6072 6169 -15 262 303 96 32 chr1 36054472 36054660 -246139004 - L2 LINE L2 -140 3173 2974 248 208 0 0 chr1 36054833 36054881 -246138783 + L2 LINE L2 3004 3051 -221 187 195 0 24 chr1 36054994 36055035 -246138629 + L2 LINE L2 3243 3282 -31 2052 141 13 0 chr1 36057401 36057707 -246135957 + AluSx SINE Alu 1 310 -2 2350 93 3 7 chr1 36058260 36058560 -246135104 - AluSc SINE Alu -10 299 1 241 160 20 0 chr1 36058560 36058610 -246135054 + MER58 DNA MER1_type 2370 2420 0 2447 91 0 0 chr1 36058738 36059046 -246134618 - AluY SINE Alu -2 309 2 2423 85 10 0 chr1 36059056 36059361 -246134303 - AluSx SINE Alu -4 308 1 928 291 100 46 chr1 36059383 36059770 -246133894 - L1MEc LINE L1 -4574 1822 1457 1710 178 24 10 chr1 36059770 36060068 -246133596 - AluJb SINE Alu -10 302 1 928 291 100 46 chr1 36060068 36060499 -246133165 - L1MEc LINE L1 -4939 1457 942 2312 74 35 0 chr1 36060499 36060820 -246132844 - AluY SINE Alu 0 311 1 928 291 100 46 chr1 36060820 36060961 -246132703 - L1MEc LINE L1 -5454 942 810 2477 99 0 0 chr1 36061596 36061909 -246131755 - AluSq SINE Alu 0 313 1 274 308 15 62 chr1 36062734 36062864 -246130800 - MER5A DNA MER1_type -4 185 62 2514 67 0 19 chr1 36062890 36063202 -246130462 - AluY SINE Alu -5 306 1 443 145 26 0 chr1 36063303 36063379 -246130285 - AluS SINE Alu -233 79 2 2417 86 7 0 chr1 36063416 36063717 -246129947 + AluSc SINE Alu 1 303 -6 2443 91 0 0 chr1 36063727 36064035 -246129629 + AluY SINE Alu 2 309 -2 743 181 90 57 chr1 36064163 36064213 -246129451 - MER58C DNA MER1_type -2205 215 168 2340 94 0 7 chr1 36064213 36064510 -246129154 + AluSc SINE Alu 1 295 -14 743 181 90 57 chr1 36064510 36064636 -246129028 - MER58C DNA MER1_type -2252 168 33 2229 129 0 10 chr1 36064701 36065012 -246128652 + AluSg SINE Alu 1 308 -2 1882 147 29 19 chr1 36065045 36065352 -246128312 - AluJo SINE Alu -2 310 1 2455 99 0 3 chr1 36065371 36065685 -246127979 + AluSq SINE Alu 1 313 0 243 0 0 0 chr1 36065685 36065712 -246127952 + (TA)n Simple_repeat Simple_repeat 1 27 0 1834 195 0 0 chr1 36065751 36066058 -246127606 + AluJo SINE Alu 1 307 -5 387 228 65 32 chr1 36066196 36066319 -246127345 + MIR SINE MIR 25 151 -111 2081 129 0 3 chr1 36066539 36066833 -246126831 - AluSx SINE Alu -19 293 1 1487 150 67 33 chr1 36067218 36067518 -246126146 + AluJb SINE Alu 3 312 0 258 319 108 88 chr1 36067518 36067951 -246125713 - L2 LINE L2 -17 3255 2814 515 226 215 34 chr1 36068274 36068451 -246125213 + MER3 DNA MER1_type 1 209 0 619 159 93 0 chr1 36068513 36068620 -246125044 - FLAM_C SINE Alu -16 117 1 2103 142 0 3 chr1 36068648 36068943 -246124721 - AluSx SINE Alu -18 294 1 546 136 0 0 chr1 36069099 36069180 -246124484 - AluSg1 SINE Alu -219 90 10 2222 103 3 0 chr1 36069206 36069488 -246124176 + AluSp SINE Alu 16 298 -15 2231 107 0 3 chr1 36069544 36069835 -246123829 - AluY SINE Alu -20 291 2 329 265 128 51 chr1 36069836 36070070 -246123594 - L1ME LINE L1 -349 5772 5521 2317 82 3 17 chr1 36070075 36070369 -246123295 + AluSp SINE Alu 1 290 -23 21 57 0 0 chr1 36071660 36071695 -246121969 + AT_rich Low_complexity Low_complexity 1 35 0 319 194 45 0 chr1 36076946 36077013 -246116651 + MER103 DNA DNA 3 72 -94 319 233 115 51 chr1 36077047 36077217 -246116447 - MIR SINE MIR 0 262 69 2800 13 0 0 chr1 36077249 36077548 -246116116 - AluYa5 SINE Alu -12 299 1 9859 115 46 50 chr1 36077548 36078123 -246115541 - Tigger1 DNA MER2_type -688 1730 1154 2063 109 0 67 chr1 36078123 36078280 -246115384 - AluSx SINE Alu -21 291 164 2256 108 10 0 chr1 36078280 36078577 -246115087 - AluSg SINE Alu -10 300 1 2063 109 0 67 chr1 36078577 36078731 -246114933 - AluSx SINE Alu -148 164 1 9859 115 46 50 chr1 36078731 36079038 -246114626 - Tigger1 DNA MER2_type -1264 1154 847 10273 53 5 106 chr1 36079038 36080575 -246113089 - SVA Other Other -4 1382 1 9859 115 46 50 chr1 36080575 36080979 -246112685 - Tigger1 DNA MER2_type -1571 847 443 2376 86 0 10 chr1 36080979 36081282 -246112382 + AluSg1 SINE Alu 1 300 -9 9859 115 46 50 chr1 36081282 36081728 -246111936 - Tigger1 DNA MER2_type -1975 443 1 1268 241 60 62 chr1 36082020 36082122 -246111542 + LTR38 LTR ERV1 61 162 -394 881 121 87 7 chr1 36082122 36082271 -246111393 + L1PA15 LINE L1 6005 6165 0 1268 241 60 62 chr1 36082271 36082665 -246110999 + LTR38 LTR ERV1 162 556 0 1779 184 0 3 chr1 36082746 36083039 -246110625 - AluJb SINE Alu 0 312 21 260 289 8 47 chr1 36083088 36083216 -246110448 - L1MEd LINE L1 -4908 1211 1089 1799 167 24 3 chr1 36083216 36083504 -246110160 - AluJo SINE Alu -17 295 2 2215 79 68 0 chr1 36083523 36083802 -246109862 - AluSx SINE Alu -14 298 1 371 317 0 0 chr1 36083892 36083993 -246109671 + L2 LINE L2 3199 3299 -14 * 857 311 47 3 chr1 36083986 36084304 -246109360 + L2 LINE L2 2979 3310 -3 2134 147 0 6 chr1 36084377 36084690 -246108974 - AluSx SINE Alu -1 311 1 743 196 0 0 chr1 36084705 36084838 -246108826 - FLAM_C SINE Alu 0 133 1 288 270 173 30 chr1 36084906 36085082 -246108582 + MIR SINE MIR 16 211 -51 2292 114 0 0 chr1 36085126 36085424 -246108240 + AluSq SINE Alu 1 298 -15 297 311 76 8 chr1 36085613 36085732 -246107932 + L2 LINE L2 3142 3268 -4 3898 105 4 4 chr1 36086505 36087068 -246106596 + LTR6A LTR ERV1 1 563 -1 3131 88 8 42 chr1 36087169 36087324 -246106340 + MER4D LTR ERV1 2 161 -711 1554 183 35 3 chr1 36087324 36087613 -246106051 - AluJb SINE Alu -12 300 3 3131 88 8 42 chr1 36087613 36087957 -246105707 + MER4D LTR ERV1 161 484 -388 261 105 0 0 chr1 36288009 36288047 -245905617 - L1MA3 LINE L1 -5 6300 6263 1011 158 15 71 chr1 36288212 36288287 -245905377 + MER5A DNA MER1_type 2 80 -109 2300 100 0 3 chr1 36288287 36288597 -245905067 + AluSq SINE Alu 1 309 -4 1011 158 15 71 chr1 36288597 36288717 -245904947 + MER5A DNA MER1_type 80 186 -3 698 216 30 0 chr1 36289261 36289395 -245904269 + MIR SINE MIR 47 184 -78 458 221 66 33 chr1 36289420 36289542 -245904122 + MIR SINE MIR 68 193 -69 2140 107 13 10 chr1 36289543 36289853 -245903811 - AluSx SINE Alu -1 311 1 516 271 29 29 chr1 36290027 36290197 -245903467 + MIR SINE MIR 2 171 -91 3788 253 125 39 chr1 36290328 36292129 -245901535 + L2 LINE L2 1275 3270 -43 316 291 7 78 chr1 36292181 36292233 -245901431 + MIR SINE MIR 117 171 -91 2307 101 0 0 chr1 36292233 36292539 -245901125 - AluSg SINE Alu -4 306 1 316 291 7 78 chr1 36292539 36292627 -245901037 + MIR SINE MIR 171 247 -15 421 298 14 35 chr1 36293011 36293152 -245900512 + MIR SINE MIR 108 245 -17 392 270 60 76 chr1 36293222 36293314 -245900350 + MIR SINE MIR 32 121 -141 2353 83 3 13 chr1 36293314 36293627 -245900037 - AluSq SINE Alu -2 311 2 392 270 60 76 chr1 36293627 36293719 -245899945 + MIR SINE MIR 121 213 -49 27 29 0 0 chr1 36293747 36293781 -245899883 + AT_rich Low_complexity Low_complexity 1 34 0 202 139 0 93 chr1 36294027 36294070 -245899594 + L2 LINE L2 3233 3271 -1 260 365 91 15 chr1 36294614 36294811 -245898853 - L2 LINE L2 -683 2631 2420 4007 126 44 16 chr1 36294864 36294875 -245898789 - L1MC1 LINE L1 -429 5904 5895 2028 129 0 7 chr1 36294875 36295185 -245898479 - AluSq SINE Alu -1 312 5 4007 126 44 16 chr1 36295185 36295863 -245897801 - L1MC1 LINE L1 -438 5895 5186 2123 116 0 13 chr1 36295863 36296173 -245897491 - AluSx SINE Alu -4 308 3 4007 126 44 16 chr1 36296173 36296262 -245897402 - L1MC1 LINE L1 -1147 5186 5101 592 260 68 7 chr1 36296275 36296421 -245897243 + L2 LINE L2 3112 3266 -47 1362 252 144 54 chr1 36296533 36297323 -245896341 + L1MEd LINE L1 285 1145 -4974 262 167 10 128 chr1 36297327 36297429 -245896235 - LTR50 LTR ERVL -17 771 667 434 305 17 0 chr1 36297700 36297818 -245895846 + MIR3 SINE MIR 68 187 -21 1298 278 88 10 chr1 36298153 36298639 -245895025 + L1ME2 LINE L1 5369 5892 -272 22 35 0 0 chr1 36298672 36298701 -245894963 + AT_rich Low_complexity Low_complexity 1 29 0 395 195 54 163 chr1 36298902 36299103 -245894561 + L1MC5 LINE L1 7324 7545 -416 666 233 0 0 chr1 36299103 36299236 -245894428 + FLAM_C SINE Alu 1 133 0 395 195 54 163 chr1 36299236 36299281 -245894383 + L1MC5 LINE L1 7545 7593 -368 2047 120 0 3 chr1 36299281 36299573 -245894091 + AluSx SINE Alu 2 292 -20 395 195 54 163 chr1 36299573 36299786 -245893878 + L1MC5 LINE L1 7593 7734 -227 225 0 0 0 chr1 36299853 36299878 -245893786 + (CA)n Simple_repeat Simple_repeat 1 25 0 2091 132 3 0 chr1 36300092 36300403 -245893261 - AluSx SINE Alu 0 312 1 1997 129 0 3 chr1 36301378 36301672 -245891992 + AluSx SINE Alu 1 293 -19 285 216 167 10 chr1 36301966 36302068 -245891596 + L1ME4a LINE L1 5816 5933 -188 308 330 0 11 chr1 36302662 36302753 -245890911 - MIR SINE MIR -81 127 38 428 262 19 9 chr1 36303029 36303136 -245890528 + MIR SINE MIR 36 143 -119 437 244 92 43 chr1 36303188 36303352 -245890312 + MIR SINE MIR 8 179 -83 226 214 43 51 chr1 36304056 36304067 -245889597 - HAL1b LINE L1 -1 1347 592 2877 121 2 46 chr1 36304067 36304305 -245889359 + Tigger2a DNA MER2_type 1 211 -2497 2086 123 0 0 chr1 36304305 36304597 -245889067 + AluSx SINE Alu 1 292 -20 2877 121 2 46 chr1 36304597 36304812 -245888852 + Tigger2a DNA MER2_type 211 434 0 382 226 165 26 chr1 36304812 36305042 -245888622 - L1ME4a LINE L1 -21 6100 1232 224 246 0 72 chr1 36305519 36305588 -245888076 + MIR SINE MIR 89 152 -110 243 342 18 9 chr1 36305997 36306108 -245887556 - MIR SINE MIR -65 143 32 362 278 150 9 chr1 36306133 36306327 -245887337 + MIR SINE MIR 34 250 -12 1901 156 6 13 chr1 36306408 36306722 -245886942 + AluJo SINE Alu 1 312 0 283 316 160 11 chr1 36307692 36307879 -245885785 + L2 LINE L2 2840 3054 -218 211 191 0 56 chr1 36308059 36308194 -245885470 + (CAGCC)n Simple_repeat Simple_repeat 1 127 0 418 237 4 185 chr1 36308575 36308807 -245884857 + MER91B DNA MER1_type 1 190 0 4423 99 25 34 chr1 36308864 36308910 -245884754 + L1MA8 LINE L1 5570 5615 -676 1827 151 0 0 chr1 36308910 36309194 -245884470 + AluSx SINE Alu 5 288 -24 4423 99 25 34 chr1 36309194 36309873 -245883791 + L1MA8 LINE L1 5615 6288 -3 419 267 149 56 chr1 36310118 36310166 -245883498 - MIR SINE MIR -14 248 206 1054 219 37 0 chr1 36310166 36310381 -245883283 - MER58A DNA MER1_type 0 224 2 419 267 149 56 chr1 36310381 36310527 -245883137 - MIR SINE MIR -56 206 36 397 311 122 0 chr1 36310655 36310819 -245882845 - MIR SINE MIR -56 206 23 23 0 0 0 chr1 36310976 36310999 -245882665 + AT_rich Low_complexity Low_complexity 1 23 0 819 145 0 15 chr1 36310999 36311130 -245882534 - FLAM_C SINE Alu -14 129 1 21 0 0 0 chr1 36311130 36311151 -245882513 + AT_rich Low_complexity Low_complexity 1 21 0 612 276 191 5 chr1 36311158 36311368 -245882296 - MIR SINE MIR -12 250 2 521 301 198 47 chr1 36311399 36312440 -245881224 - L2 LINE L2 -18 3295 2090 2111 107 0 3 chr1 36312710 36313000 -245880664 + AluSg SINE Alu 1 289 -21 2242 86 7 0 chr1 36313013 36313315 -245880349 + AluSp SINE Alu 1 304 -9 259 263 22 80 chr1 36313595 36313732 -245879932 - L1ME3A LINE L1 -77 6093 5965 783 281 95 28 chr1 36313863 36314330 -245879334 - L1ME3A LINE L1 -353 5809 5300 403 221 14 107 chr1 36314634 36314672 -245878992 - MIR SINE MIR -33 229 189 2087 121 0 13 chr1 36314672 36314850 -245878814 - AluSg SINE Alu -1 309 135 1974 130 7 3 chr1 36314850 36315150 -245878514 - AluSg SINE Alu -9 301 1 2087 121 0 13 chr1 36315150 36315284 -245878380 - AluSg SINE Alu -175 135 1 403 221 14 107 chr1 36315284 36315385 -245878279 - MIR SINE MIR -73 189 103 1060 246 188 34 chr1 36315418 36315930 -245877734 - L2 LINE L2 0 3313 2741 826 171 201 0 chr1 36317104 36317268 -245876396 + L1MB7 LINE L1 5929 6125 -59 2332 65 0 0 chr1 36317279 36317570 -245876094 - AluY SINE Alu -20 291 1 2001 107 48 0 chr1 36317570 36317860 -245875804 - AluSq SINE Alu -9 304 1 350 164 74 59 chr1 36318032 36318133 -245875531 + MIR SINE MIR 73 172 -63 2043 121 3 0 chr1 36318340 36318629 -245875035 + AluSx SINE Alu 1 290 -22 667 193 0 36 chr1 36318998 36319138 -245874526 + L2 LINE L2 3179 3313 0 536 308 139 51 chr1 36319449 36319858 -245873806 - L2 LINE L2 0 3272 2828 265 245 118 10 chr1 36320015 36320117 -245873547 + MIR SINE MIR 68 180 -82 1084 222 10 5 chr1 36320442 36320649 -245873015 - MIR SINE MIR -25 237 30 366 283 143 26 chr1 36321412 36321642 -245872022 - L2 LINE L2 -457 2857 2601 218 333 0 67 chr1 36321622 36321757 -245871907 + MIR SINE MIR 80 205 -57 * 204 250 104 0 chr1 36321856 36321904 -245871760 - MIR SINE MIR -145 117 65 215 276 40 0 chr1 36322236 36322312 -245871352 - L2 LINE L2 -601 2713 2635 658 291 62 26 chr1 36322538 36322765 -245870899 + MIR SINE MIR 22 256 -6 720 179 160 66 chr1 36324150 36324203 -245869461 - L1MB7 LINE L1 -20 6233 6186 1942 114 6 50 chr1 36324203 36324520 -245869144 + AluSx SINE Alu 3 305 -7 720 179 160 66 chr1 36324520 36324678 -245868986 - L1MB7 LINE L1 -67 6186 6002 8492 61 6 1 chr1 36324979 36326869 -245866795 + L1PA6 LINE L1 4223 6141 -13 3384 198 102 105 chr1 36326880 36327207 -245866457 - L1MB7 LINE L1 -743 5472 5145 996 225 0 0 chr1 36327207 36327380 -245866284 - FAM SINE Alu -2 173 1 3384 198 102 105 chr1 36327380 36327894 -245865770 - L1MB7 LINE L1 -1070 5145 4631 2025 134 0 7 chr1 36327894 36328201 -245865463 - AluSx SINE Alu -7 305 1 3384 198 102 105 chr1 36328201 36328334 -245865330 - L1MB7 LINE L1 -1584 4631 4499 1685 182 0 3 chr1 36328334 36328631 -245865033 - AluJo SINE Alu -16 296 1 3384 198 102 105 chr1 36328631 36329202 -245864462 - L1MB7 LINE L1 -1716 4499 4053 * 5220 168 23 25 chr1 36329189 36330975 -245862689 + L1MA9 LINE L1 4480 6274 -38 5169 232 57 19 chr1 36330995 36331223 -245862441 - L1MB7 LINE L1 -2140 4075 3857 2268 64 10 7 chr1 36331223 36331519 -245862145 - AluY SINE Alu -14 297 1 5169 232 57 19 chr1 36331519 36332701 -245860963 - L1MB7 LINE L1 -2358 3857 2535 2129 135 68 14 chr1 36332701 36333071 -245860593 - MLT1B LTR MaLR 0 390 1 5169 232 57 19 chr1 36333071 36333469 -245860195 - L1MB7 LINE L1 -3680 2535 2154 722 164 0 52 chr1 36333479 36333613 -245860051 - FRAM SINE Alu -8 168 42 3715 233 34 33 chr1 36333656 36333777 -245859887 - L1MEc LINE L1 -4366 2030 1911 1987 104 18 0 chr1 36333777 36334098 -245859566 - AluSq SINE Alu 0 326 1 3715 233 34 33 chr1 36334098 36335140 -245858524 - L1MEc LINE L1 -4485 1911 865 1810 168 0 13 chr1 36335147 36335450 -245858214 - AluJb SINE Alu -13 299 1 598 158 62 89 chr1 36335462 36335608 -245858056 - FLAM_C SINE Alu 0 143 2 2727 232 87 6 chr1 36335609 36336307 -245857357 - L1MEc LINE L1 -5528 868 114 757 140 18 0 chr1 36336307 36336421 -245857243 + Tigger3b DNA MER2_type 2 117 -1114 2389 185 35 78 chr1 36336421 36336998 -245856666 - MLT2B3 LTR ERVL 0 554 3 * 6591 111 24 12 chr1 36336998 36337404 -245856260 + Tigger3b DNA MER2_type 119 519 -2509 2091 116 0 0 chr1 36337404 36337736 -245855928 - AluSx SINE Alu 0 332 1 6591 111 24 12 chr1 36337736 36338356 -245855308 + Tigger3b DNA MER2_type 519 1158 -73 2062 88 0 0 chr1 36338421 36338670 -245854994 - AluSg SINE Alu -61 249 1 393 121 0 0 chr1 36338956 36339023 -245854641 - Alu SINE Alu -247 53 1 547 296 165 19 chr1 36339061 36339328 -245854336 + L2 LINE L2 2918 3223 -49 212 286 18 0 chr1 36339386 36339442 -245854222 + L2 LINE L2 3256 3312 -1 * 287 265 57 11 chr1 36339440 36339528 -245854136 + MIR SINE MIR 76 166 -55 1120 181 9 18 chr1 36339578 36339799 -245853865 - MER20 DNA MER1_type 0 219 1 472 284 91 25 chr1 36340366 36340563 -245853101 + MIR SINE MIR 53 262 0 2485 88 0 3 chr1 36340597 36340905 -245852759 - AluSp SINE Alu -6 307 1 265 229 56 108 chr1 36340948 36341141 -245852523 + MIR SINE MIR 20 212 -50 243 306 20 61 chr1 36343265 36343412 -245850252 - L2 LINE L2 -33 3239 3099 1887 174 0 0 chr1 36343434 36343715 -245849949 + AluJo SINE Alu 1 281 -31 2067 147 0 3 chr1 36343741 36344041 -245849623 + AluSx SINE Alu 7 305 -7 480 288 33 0 chr1 36344220 36344373 -245849291 + MIR3 SINE MIR 2 159 -49 1780 213 121 65 chr1 36344378 36345098 -245848566 - MER20B DNA MER1_type -3 780 21 185 245 0 0 chr1 36345099 36345148 -245848516 + MIR3 SINE MIR 154 202 -6 243 267 163 0 chr1 36345161 36345247 -245848417 - L2 LINE L2 -5 3267 3168 327 190 140 20 chr1 36345260 36345360 -245848304 - MIR3 SINE MIR -27 181 70 277 331 140 0 chr1 36346058 36346215 -245847449 + MIR3 SINE MIR 23 201 -7 389 359 145 15 chr1 36346923 36347316 -245846348 - LTR67 LTR ERVL 0 557 114 361 294 31 55 chr1 36347826 36347989 -245845675 - MIR SINE MIR -36 226 68 419 311 62 6 chr1 36348096 36348257 -245845407 + MIR SINE MIR 13 182 -80 2693 177 39 7 chr1 36348528 36348753 -245844911 - LTR64 LTR ERVK 0 558 342 2328 72 10 7 chr1 36348753 36349046 -245844618 + AluSp SINE Alu 3 296 -17 2693 177 39 7 chr1 36349046 36349361 -245844303 - LTR64 LTR ERVK -216 342 1 229 301 63 28 chr1 36350234 36350401 -245843263 - MIR SINE MIR -70 192 5 291 281 22 82 chr1 36350587 36350722 -245842942 + MIR3 SINE MIR 82 208 0 742 77 10 0 chr1 36351326 36351430 -245842234 - L1PA10 LINE L1 -3 6165 6061 357 250 213 0 chr1 36351671 36351807 -245841857 - MIR3 SINE MIR -13 195 31 221 236 181 24 chr1 36352093 36352220 -245841444 - MIR3 SINE MIR -41 167 21 258 280 51 34 chr1 36352882 36353000 -245840664 + MIR SINE MIR 30 149 -59 293 365 19 0 chr1 36354240 36354396 -245839268 + L2 LINE L2 2226 2384 -930 411 353 68 23 chr1 36354396 36354865 -245838799 + L2 LINE L2 2685 3270 -2 475 263 36 7 chr1 36355135 36355272 -245838392 + MIR SINE MIR 24 164 -98 2506 96 0 0 chr1 36355304 36355616 -245838048 - AluSq SINE Alu -1 312 1 184 298 21 0 chr1 36355643 36355690 -245837974 - L2 LINE L2 -20 3252 3205 180 293 17 17 chr1 36356499 36356557 -245837107 - MIR SINE MIR -108 100 43 328 263 74 11 chr1 36356746 36356841 -245836823 - MIR SINE MIR -62 146 46 231 36 0 0 chr1 36356861 36356889 -245836775 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 243 0 0 0 chr1 36357045 36357072 -245836592 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 1674 169 0 41 chr1 36357072 36357367 -245836297 - AluJo SINE Alu -27 285 3 208 261 22 43 chr1 36357971 36358063 -245835601 + L2 LINE L2 2490 2579 -735 3215 121 33 23 chr1 36358166 36358688 -245834976 + MER1A DNA MER1_type 1 527 0 797 264 25 17 chr1 36358734 36358969 -245834695 - MIR SINE MIR -8 254 18 1059 171 26 18 chr1 36359019 36359247 -245834417 + MER96B DNA MER1_type? 133 362 -55 761 294 84 15 chr1 36359253 36359644 -245834020 + L2 LINE L2 2835 3252 -61 185 246 88 0 chr1 36360009 36360066 -245833598 - MIR3 SINE MIR -19 189 128 741 259 116 12 chr1 36360144 36360403 -245833261 - L2 LINE L2 -2 3311 3026 457 216 22 86 chr1 36360479 36360618 -245833046 + MLT1J LTR MaLR 262 391 -120 581 234 7 22 chr1 36360689 36360826 -245832838 + MER63A DNA MER1_type 72 206 -4 316 304 136 59 chr1 36361495 36361936 -245831728 + L2 LINE L2 2373 2847 -467 871 191 106 0 chr1 36361946 36362134 -245831530 - MER3 DNA MER1_type -1 208 1 192 250 0 0 chr1 36362175 36362219 -245831445 + L2 LINE L2 2998 3041 -231 1936 123 31 24 chr1 36362319 36362612 -245831052 + AluSx SINE Alu 1 295 -17 311 172 0 0 chr1 36362629 36362687 -245830977 + Alu SINE Alu 245 302 0 235 191 24 0 chr1 36362687 36362729 -245830935 + L2 LINE L2 3141 3183 -89 586 228 66 56 chr1 36363015 36363212 -245830452 + MIR SINE MIR 44 242 -20 328 307 22 0 chr1 36363311 36363448 -245830216 - MIR3 SINE MIR -15 193 54 635 257 59 21 chr1 36363592 36363779 -245829885 - MIR SINE MIR -56 206 13 188 310 17 0 chr1 36363802 36363860 -245829804 - L2 LINE L2 -4 3309 3251 300 235 80 123 chr1 36364013 36364053 -245829611 + MIR SINE MIR 108 148 -114 2235 128 0 0 chr1 36364053 36364358 -245829306 - AluSx SINE Alu -7 305 1 300 235 80 123 chr1 36364358 36364479 -245829185 + MIR SINE MIR 148 262 0 200 333 25 25 chr1 36365191 36365272 -245828392 + MIR SINE MIR 164 244 -18 315 213 0 0 chr1 36365664 36365739 -245827925 + (TG)n Simple_repeat Simple_repeat 1 75 0 186 311 0 49 chr1 36365884 36365945 -245827719 + MIR SINE MIR 40 97 -165 1701 151 12 72 chr1 36365949 36366281 -245827383 - AluJo SINE Alu 0 312 1 372 178 33 0 chr1 36366296 36366386 -245827278 - L1MB4 LINE L1 -2 6178 6086 1948 172 0 19 chr1 36366446 36366760 -245826904 - AluJb SINE Alu -4 308 1 392 215 51 0 chr1 36366768 36366847 -245826817 + MIR SINE MIR 110 192 -70 241 305 0 0 chr1 36367162 36367257 -245826407 - L1MC4 LINE L1 -1334 6708 6614 236 234 0 43 chr1 36367225 36367319 -245826345 - L1MC4 LINE L1 -1339 6703 6614 * 1965 106 31 38 chr1 36367324 36367616 -245826048 - AluSx SINE Alu -22 290 1 270 200 0 33 chr1 36367784 36367844 -245825820 + MIR3 SINE MIR 122 179 -29 546 286 71 34 chr1 36367862 36368100 -245825564 + MIR SINE MIR 1 247 -15 782 257 52 5 chr1 36368997 36369207 -245824457 + MIR SINE MIR 37 256 -6 543 221 0 0 chr1 36369300 36369427 -245824237 + (CA)n Simple_repeat Simple_repeat 2 128 0 370 287 66 30 chr1 36369565 36369732 -245823932 - MIR SINE MIR -10 252 80 284 291 0 0 chr1 36369781 36369860 -245823804 - L2 LINE L2 -209 3063 2985 1017 185 25 30 chr1 36369866 36370066 -245823598 + MER20 DNA MER1_type 7 205 -14 520 302 167 0 chr1 36370082 36370297 -245823367 - MIR SINE MIR -4 258 8 220 248 137 46 chr1 36370352 36370505 -245823159 + MIR3 SINE MIR 35 201 -7 481 256 43 37 chr1 36371256 36371420 -245822244 + MIR3 SINE MIR 21 185 -23 399 260 40 0 chr1 36371707 36371807 -245821857 - L3 LINE CR1 -71 1506 1403 245 309 36 18 chr1 36371887 36371997 -245821667 - L2 LINE L2 -1 3271 3160 477 276 0 32 chr1 36372070 36372226 -245821438 + MER103 DNA DNA 3 153 -13 216 0 0 0 chr1 36372262 36372286 -245821378 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 220 267 67 0 chr1 36372292 36372367 -245821297 - L2 LINE L2 -214 3058 2979 283 206 22 98 chr1 36373091 36373275 -245820389 + (CCCCG)n Simple_repeat Simple_repeat 5 174 0 279 0 0 0 chr1 36374877 36374908 -245818756 + (TG)n Simple_repeat Simple_repeat 2 32 0 225 313 0 23 chr1 36374974 36375105 -245818559 - L2 LINE L2 -290 2982 2855 378 288 38 44 chr1 36375680 36375840 -245817824 + MLT1L LTR MaLR 15 173 -442 334 230 14 0 chr1 36375833 36375907 -245817757 + MLT1L LTR MaLR 124 198 -417 * 226 237 197 26 chr1 36376024 36376100 -245817564 + MLT1K LTR MaLR 328 416 -172 255 260 60 30 chr1 36376136 36376236 -245817428 + MLT1L LTR MaLR 513 615 0 186 273 182 16 chr1 36376354 36376475 -245817189 - L2 LINE L2 -1 3312 3172 290 297 30 10 chr1 36376500 36376601 -245817063 - MIR SINE MIR -48 214 112 473 322 161 24 chr1 36376610 36377032 -245816632 + MLT1J2 LTR MaLR 1 495 -16 2244 126 0 0 chr1 36377054 36377356 -245816308 - AluSx SINE Alu -10 302 1 2335 108 0 0 chr1 36377500 36377797 -245815867 - AluSx SINE Alu -15 297 1 2771 199 12 34 chr1 36378294 36378800 -245814864 - MER82 DNA MER2_type -1 652 158 2058 117 7 3 chr1 36378800 36379102 -245814562 + AluSq SINE Alu 1 303 0 2771 199 12 34 chr1 36379102 36379181 -245814483 - MER82 DNA MER2_type -495 158 79 453 249 50 50 chr1 36379325 36379506 -245814158 - MIR SINE MIR -17 245 65 205 337 46 29 chr1 36379656 36379831 -245813833 + L2 LINE L2 1314 1491 -1823 186 354 88 19 chr1 36379973 36380188 -245813476 + L2 LINE L2 1569 1798 -1516 1180 240 103 51 chr1 36380816 36381283 -245812381 - LTR16C LTR ERVL 0 491 1 213 276 17 0 chr1 36381380 36381438 -245812226 + GA-rich Low_complexity Low_complexity 3 61 0 873 325 45 37 chr1 36381540 36381887 -245811777 - ERVL LTR ERVL -711 5053 4698 2212 93 11 0 chr1 36381887 36382190 -245811474 + AluSg SINE Alu 1 306 0 873 325 45 37 chr1 36382190 36382333 -245811331 - ERVL LTR ERVL -1066 4698 4558 2223 323 42 16 chr1 36382479 36383440 -245810224 - ERVL LTR ERVL -1322 4332 3347 327 247 12 12 chr1 36383472 36383553 -245810111 + LTR50 LTR ERVL 3 83 -712 409 306 15 7 chr1 36383564 36383698 -245809966 - L1MC4 LINE L1 -1332 6990 1976 1133 352 13 4 chr1 36383716 36384460 -245809204 - ERVL LTR ERVL -3420 1576 1251 1134 227 176 5 chr1 36384594 36385192 -245808472 + LTR50 LTR ERVL 3 787 -8 567 318 35 83 chr1 36385214 36385415 -245808249 - ERVL LTR ERVL -3957 1039 869 2175 122 14 0 chr1 36385415 36385710 -245807954 - AluSx SINE Alu 0 312 14 567 318 35 83 chr1 36385710 36385939 -245807725 - ERVL LTR ERVL -4127 869 630 386 296 85 40 chr1 36386425 36386624 -245807040 - LTR16C LTR ERVL -96 395 188 260 256 146 0 chr1 36386749 36386831 -245806833 + L1MD2 LINE L1 6256 6349 -10 261 203 0 16 chr1 36386860 36386898 -245806766 + (TA)n Simple_repeat Simple_repeat 2 40 -24 252 0 0 0 chr1 36386898 36386926 -245806738 + (CA)n Simple_repeat Simple_repeat 1 28 0 261 203 0 16 chr1 36386926 36386951 -245806713 + (TA)n Simple_repeat Simple_repeat 40 64 0 361 363 74 28 chr1 36387226 36387441 -245806223 + L1MEd LINE L1 535 759 -5360 423 324 101 52 chr1 36387466 36387871 -245805793 - LTR16A LTR ERVL -8 442 18 361 239 121 38 chr1 36387911 36388150 -245805514 + L1MEd LINE L1 817 1075 -5044 401 231 92 136 chr1 36388150 36388170 -245805494 + MIR SINE MIR 5 24 -238 2005 139 17 7 chr1 36388170 36388471 -245805193 + AluJb SINE Alu 1 304 -8 401 231 92 136 chr1 36388471 36388703 -245804961 + MIR SINE MIR 24 246 -16 * 418 299 39 20 chr1 36388684 36388907 -245804757 + L1MEd LINE L1 1031 1257 -4862 216 257 135 47 chr1 36389339 36389487 -245804177 - L2 LINE L2 -214 3058 2898 239 0 0 31 chr1 36389754 36389786 -245803878 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2013 93 14 18 chr1 36389788 36390067 -245803597 - AluSx SINE Alu -32 280 3 521 240 33 13 chr1 36390691 36390841 -245802823 + MIR SINE MIR 41 193 -69 181 308 0 0 chr1 36391005 36391057 -245802607 + MIR SINE MIR 48 99 -163 386 287 125 54 chr1 36392297 36392612 -245801052 - L2 LINE L2 -1 3271 2927 876 205 102 19 chr1 36392612 36392817 -245800847 + MER58A DNA MER1_type 2 223 -1 386 287 125 54 chr1 36392817 36392853 -245800811 - L2 LINE L2 -345 2927 2895 285 194 0 69 chr1 36393262 36393334 -245800330 - MER33 DNA MER1_type 0 324 258 843 177 23 87 chr1 36393400 36393666 -245799998 - MER33 DNA MER1_type -75 249 1 304 250 181 43 chr1 36393721 36393837 -245799827 + L2 LINE L2 3138 3269 -3 1886 218 58 73 chr1 36394321 36394871 -245798793 - MLT1F1 LTR MaLR 0 567 1 2214 114 3 0 chr1 36394916 36395214 -245798450 + AluSq SINE Alu 1 299 -14 3081 150 24 19 chr1 36395314 36395886 -245797778 - LTR51 LTR ERV1 0 671 2 235 229 14 43 chr1 36396191 36396261 -245797403 + L2 LINE L2 2304 2371 -943 184 292 100 39 chr1 36396481 36396611 -245797053 + MIR3 SINE MIR 3 140 -68 653 221 66 74 chr1 36396615 36396683 -245796981 - MIR SINE MIR -3 259 192 1698 161 0 42 chr1 36396683 36396993 -245796671 - AluJb SINE Alu -15 297 1 653 221 66 74 chr1 36396993 36397168 -245796496 - MIR SINE MIR -70 192 18 1022 161 21 5 chr1 36398125 36398311 -245795353 + MER53 DNA DNA 1 189 0 231 326 82 10 chr1 36398566 36398664 -245795000 - L2 LINE L2 -5 3267 3163 602 225 163 52 chr1 36398848 36399060 -245794604 - L2 LINE L2 0 3313 3055 835 156 0 15 chr1 36399060 36399195 -245794469 - FLAM_C SINE Alu 0 133 1 602 225 163 52 chr1 36399195 36399289 -245794375 - L2 LINE L2 -258 3055 2973 252 0 0 0 chr1 36399313 36399341 -245794323 + (GGAAA)n Simple_repeat Simple_repeat 5 32 0 230 361 106 14 chr1 36399477 36399685 -245793979 - L2 LINE L2 -240 3073 2847 4089 70 0 2 chr1 36400028 36400553 -245793111 + L1PA5 LINE L1 5629 6152 -2 8789 152 53 28 chr1 36400643 36401375 -245792289 - L1 LINE L1 -1137 5009 4296 2146 129 7 0 chr1 36401375 36401685 -245791979 - AluSx SINE Alu 0 312 1 8789 152 53 28 chr1 36401685 36401699 -245791965 - L1 LINE L1 -1850 4296 4284 1961 143 11 0 chr1 36401699 36401979 -245791685 - AluSx SINE Alu -29 283 1 8789 152 53 28 chr1 36401979 36402957 -245790707 - L1 LINE L1 -1862 4284 3242 2016 131 64 22 chr1 36403240 36403600 -245790064 + THE1C LTR MaLR 1 375 0 1389 181 68 19 chr1 36403997 36404263 -245789401 + AluJb SINE Alu 1 279 -33 204 40 0 0 chr1 36404266 36404291 -245789373 + (TAAAA)n Simple_repeat Simple_repeat 3 27 0 2279 111 0 0 chr1 36404801 36405098 -245788566 + AluSx SINE Alu 1 297 -15 184 276 181 29 chr1 36405099 36405204 -245788460 - L2 LINE L2 -4 3268 3148 1696 263 73 28 chr1 36405227 36406309 -245787355 - L2 LINE L2 -4 3309 2181 2131 111 7 3 chr1 36406673 36406961 -245786703 + AluSg SINE Alu 1 289 -21 2429 99 3 0 chr1 36406974 36407286 -245786378 + AluSp SINE Alu 1 313 0 1518 123 14 9 chr1 36407291 36407511 -245786153 + AluSg/x SINE Alu 83 303 -7 485 238 19 81 chr1 36407881 36408041 -245785623 - MIR3 SINE MIR -52 156 7 1355 164 51 19 chr1 36408361 36408617 -245785047 + AluSq SINE Alu 1 264 -49 253 163 0 23 chr1 36458618 36458661 -245735003 - AluJ/FLAM SINE Alu -245 57 16 250 210 230 0 chr1 36458680 36458780 -245734884 + Charlie1 DNA MER1_type 2638 2760 -1 2360 93 0 7 chr1 36458806 36459108 -245734556 - AluSx SINE Alu -12 300 1 740 244 12 0 chr1 36459417 36459581 -245734083 + MIR3 SINE MIR 28 193 -15 186 133 0 0 chr1 36462120 36462150 -245731514 + (TTTTC)n Simple_repeat Simple_repeat 1 30 0 1896 128 0 0 chr1 36462185 36462442 -245731222 - AluSx SINE Alu -55 257 1 1999 155 0 7 chr1 36462444 36462740 -245730924 - AluJo SINE Alu -18 294 1 2224 118 0 0 chr1 36462838 36463135 -245730529 + AluSx SINE Alu 1 297 -15 253 336 36 0 chr1 36463349 36463459 -245730205 - HERVL LTR ERVL -4756 898 785 321 290 70 30 chr1 36464056 36464256 -245729408 - LTR67 LTR ERVL 0 557 350 795 290 121 22 chr1 36464795 36465199 -245728465 + L2 LINE L2 2804 3247 -66 2491 57 0 3 chr1 36465291 36465587 -245728077 - AluY SINE Alu -16 295 1 193 188 208 40 chr1 36465829 36465930 -245727734 - MIR SINE MIR -75 187 70 2243 115 3 3 chr1 36466431 36466743 -245726921 + AluSx SINE Alu 1 312 0 654 231 0 64 chr1 36466748 36466904 -245726760 + FRAM SINE Alu 1 146 -30 338 261 42 34 chr1 36467257 36467376 -245726288 + L2 LINE L2 3194 3313 0 2569 55 0 0 chr1 36467502 36467810 -245725854 - AluY SINE Alu -3 308 1 1579 185 23 0 chr1 36467828 36468130 -245725534 - L1MB7 LINE L1 -148 6036 5728 1472 197 3 20 chr1 36468262 36468557 -245725107 - AluSq SINE Alu -9 304 15 288 301 247 33 chr1 36468968 36469015 -245724649 - L2 LINE L2 -608 2706 2670 2078 141 3 0 chr1 36469015 36469313 -245724351 + AluSx SINE Alu 1 299 -13 288 301 247 33 chr1 36469313 36470051 -245723613 - L2 LINE L2 -644 2670 1753 2553 73 39 25 chr1 36470064 36470085 -245723579 - MER4D LTR ERV1 0 872 853 2053 145 0 3 chr1 36470085 36470381 -245723283 + AluSx SINE Alu 1 295 -17 2553 73 39 25 chr1 36470381 36470716 -245722948 - MER4D LTR ERV1 -19 853 511 1815 72 9 0 chr1 36470716 36470939 -245722725 - AluSq SINE Alu -10 303 79 2498 56 0 26 chr1 36471871 36472176 -245721488 + AluY SINE Alu 1 297 -14 1172 188 4 4 chr1 36472505 36472734 -245720930 - AluJb SINE Alu 0 312 84 195 42 0 0 chr1 36472777 36472801 -245720863 + (TA)n Simple_repeat Simple_repeat 1 24 0 418 284 18 71 chr1 36472846 36473015 -245720649 - MIR3 SINE MIR -33 175 16 701 288 213 17 chr1 36473517 36473920 -245719744 - L1MC4a LINE L1 -1942 5866 5385 488 221 0 11 chr1 36474939 36475034 -245718630 - L1MC1 LINE L1 -60 6273 6180 331 231 214 12 chr1 36475039 36475212 -245718452 + MIR SINE MIR 28 235 -27 287 278 49 0 chr1 36475327 36475439 -245718225 + MIR SINE MIR 56 171 -63 2196 118 10 0 chr1 36475439 36475735 -245717929 - AluSx SINE Alu -13 299 1 216 0 0 0 chr1 36475738 36475762 -245717902 + (T)n Simple_repeat Simple_repeat 1 24 0 314 275 133 13 chr1 36476141 36476287 -245717377 + MIR SINE MIR 33 189 -62 22 80 0 13 chr1 36476613 36476675 -245716989 + AT_rich Low_complexity Low_complexity 1 63 -11 1517 194 20 3 chr1 36476675 36476968 -245716696 + AluJo SINE Alu 1 298 -14 22 80 0 13 chr1 36476968 36476980 -245716684 + AT_rich Low_complexity Low_complexity 63 74 0 265 262 60 12 chr1 36477199 36477283 -245716381 + L2 LINE L2 1875 1962 -1352 291 64 0 0 chr1 36477447 36477494 -245716170 + AluSp/q SINE Alu 257 303 0 2155 199 42 58 chr1 36477510 36477968 -245715696 - L1ME1 LINE L1 -132 6034 5585 2491 59 23 0 chr1 36477968 36478272 -245715392 + AluY SINE Alu 1 311 0 2155 199 42 58 chr1 36478272 36478386 -245715278 - L1ME1 LINE L1 -581 5585 5471 2826 139 26 83 chr1 36478400 36478469 -245715195 - L1MB3 LINE L1 -2 6181 6110 2450 87 0 0 chr1 36478469 36478767 -245714897 + AluSq SINE Alu 1 298 -15 2826 139 26 83 chr1 36478767 36478868 -245714796 - L1MB3 LINE L1 -73 6110 6005 633 231 8 8 chr1 36478868 36478998 -245714666 - FLAM_A SINE Alu 0 133 4 2826 139 26 83 chr1 36478998 36479437 -245714227 - L1MB3 LINE L1 -178 6005 5606 1360 201 75 11 chr1 36479437 36479716 -245713948 - AluJo SINE Alu -13 299 3 1122 164 29 24 chr1 36479720 36479887 -245713777 - AluJb SINE Alu -6 306 136 2283 117 0 3 chr1 36479887 36480194 -245713470 - AluSx SINE Alu -6 306 1 1122 164 29 24 chr1 36480194 36480234 -245713430 - AluJb SINE Alu -176 136 98 2358 106 0 3 chr1 36480254 36480565 -245713099 - AluSx SINE Alu -2 310 1 264 149 21 0 chr1 36480565 36480612 -245713052 - L1MB3 LINE L1 -683 5491 5444 * 2667 185 113 101 chr1 36480607 36480787 -245712877 - L1ME1 LINE L1 -743 5403 5227 2552 66 0 3 chr1 36480787 36481092 -245712572 + AluY SINE Alu 1 304 -7 2667 185 113 101 chr1 36481092 36481364 -245712300 - L1ME1 LINE L1 -919 5227 4960 2380 91 3 0 chr1 36481364 36481662 -245712002 + AluSp SINE Alu 9 307 -6 2667 185 113 101 chr1 36481662 36481831 -245711833 - L1ME1 LINE L1 -1186 4960 4795 1685 148 36 22 chr1 36481831 36482109 -245711555 + AluJb SINE Alu 21 302 -10 258 32 0 0 chr1 36482110 36482141 -245711523 + (TA)n Simple_repeat Simple_repeat 2 32 0 216 0 0 0 chr1 36482140 36482164 -245711500 + (CA)n Simple_repeat Simple_repeat 2 25 0 * 2667 185 113 101 chr1 36482141 36482489 -245711175 - L1ME1 LINE L1 -1351 4795 4509 1973 153 0 3 chr1 36482489 36482789 -245710875 - AluSx SINE Alu -13 299 1 2667 185 113 101 chr1 36482789 36483182 -245710482 - L1ME1 LINE L1 -1637 4509 4122 1831 83 120 26 chr1 36483199 36483358 -245710306 - AluY SINE Alu 0 311 168 2085 124 17 0 chr1 36483358 36483649 -245710015 - AluSp SINE Alu -17 296 1 1831 83 120 26 chr1 36483649 36483784 -245709880 - AluY SINE Alu -143 168 1 2298 100 0 7 chr1 36483811 36484112 -245709552 - AluSx SINE Alu -13 299 1 840 155 8 0 chr1 36484115 36484244 -245709420 - AluSq/x SINE Alu -179 133 4 484 139 0 0 chr1 36484277 36484349 -245709315 + AluJ/FLAM SINE Alu 3 74 -238 990 183 26 7 chr1 36484384 36484614 -245709050 - AluJb SINE Alu -23 289 5 276 182 0 0 chr1 36484647 36484735 -245708929 + (TA)n Simple_repeat Simple_repeat 2 89 0 1338 72 22 22 chr1 36484736 36484892 -245708772 - AluY SINE Alu -23 288 130 1725 67 8 38 chr1 36484892 36485164 -245708500 - AluY SINE Alu 0 311 66 1338 72 22 22 chr1 36485164 36485188 -245708476 - AluY SINE Alu -180 131 108 838 168 49 0 chr1 36485200 36485343 -245708321 + FRAM SINE Alu 8 157 -19 428 174 283 0 chr1 36485349 36485441 -245708223 - FLAM_C SINE Alu -15 118 1 551 192 48 8 chr1 36485444 36485569 -245708095 - L1MEc LINE L1 -3060 3155 3026 2012 147 10 3 chr1 36485569 36485875 -245707789 - AluJb SINE Alu -4 308 1 2200 119 3 7 chr1 36485883 36486185 -245707479 - AluSg SINE Alu -9 301 1 744 167 70 87 chr1 36486198 36486497 -245707167 - L1MEc LINE L1 -4031 2365 2072 756 215 7 0 chr1 36486502 36486646 -245707018 - FRAM SINE Alu -12 164 20 2454 74 7 0 chr1 36486677 36486976 -245706688 - AluSp SINE Alu -12 301 1 720 228 70 21 chr1 36486978 36487219 -245706445 - L1MEc LINE L1 -4529 1867 1615 330 264 174 7 chr1 36487251 36487395 -245706269 - L1MEc LINE L1 -6192 204 37 23 68 0 0 chr1 36487647 36487691 -245705973 + AT_rich Low_complexity Low_complexity 1 44 0 2277 94 10 0 chr1 36487928 36488227 -245705437 + AluSq SINE Alu 6 307 -6 515 272 66 42 chr1 36488975 36489029 -245704635 + MIR SINE MIR 44 95 -167 1830 130 33 4 chr1 36489029 36489305 -245704359 - AluJb SINE Alu 0 312 29 515 272 66 42 chr1 36489305 36489463 -245704201 + MIR SINE MIR 95 261 -1 673 156 78 117 chr1 36489695 36489875 -245703789 + MIR SINE MIR 52 224 -38 244 220 66 33 chr1 36490458 36490549 -245703115 - L1P LINE L1 -743 5408 5315 472 289 75 43 chr1 36490841 36491076 -245702588 - MIR SINE MIR -1 261 17 801 159 19 125 chr1 36491258 36491280 -245702384 + MER5A DNA MER1_type 4 27 -162 2109 101 0 44 chr1 36491280 36491596 -245702068 + AluSx SINE Alu 1 302 -10 801 159 19 125 chr1 36491596 36491781 -245701883 + MER5A DNA MER1_type 27 189 0 374 276 154 32 chr1 36491868 36491940 -245701724 + MIR SINE MIR 2 64 -198 1874 131 46 0 chr1 36491940 36492222 -245701442 + AluSx SINE Alu 1 295 -17 374 276 154 32 chr1 36492222 36492370 -245701294 + MIR SINE MIR 64 249 -13 367 346 154 31 chr1 36492409 36492767 -245700897 + L2 LINE L2 2871 3272 0 1898 132 14 0 chr1 36493102 36493397 -245700267 + AluSx SINE Alu 1 299 -13 1745 149 27 7 chr1 36493524 36493825 -245699839 + AluJo SINE Alu 1 307 -5 268 217 0 0 chr1 36493827 36493873 -245699791 + MIR SINE MIR 30 75 -133 1017 217 229 23 chr1 36494011 36494094 -245699570 + L2 LINE L2 2444 2509 -805 2255 140 9 6 chr1 36494094 36494437 -245699227 + MER2 DNA MER2_type 1 344 0 1017 217 229 23 chr1 36494437 36494703 -245698961 + L2 LINE L2 2509 2865 -449 373 258 117 29 chr1 36494769 36495009 -245698655 + MIR SINE MIR 2 262 0 327 295 25 40 chr1 36495010 36495146 -245698518 - MER5B DNA MER1_type 0 178 60 2110 104 7 3 chr1 36497219 36497518 -245696146 - AluSp SINE Alu -13 300 1 2017 125 0 3 chr1 36500186 36500475 -245693189 - AluSx SINE Alu -22 290 3 188 231 231 58 chr1 36500953 36501057 -245692607 - MIR SINE MIR -67 141 20 218 218 18 36 chr1 36502516 36502571 -245691093 - L2 LINE L2 -2 3270 3217 263 263 45 11 chr1 36504199 36504299 -245689365 - MIR SINE MIR -67 141 51 2014 92 6 57 chr1 36504962 36505005 -245688659 + AluSg SINE Alu 1 45 -265 2394 66 3 0 chr1 36505005 36505306 -245688358 - AluSp SINE Alu -10 303 2 2014 92 6 57 chr1 36505306 36505579 -245688085 + AluSg SINE Alu 45 301 -9 738 209 95 38 chr1 36505617 36505828 -245687836 - MIR SINE MIR 0 262 40 522 243 246 22 chr1 36505896 36506213 -245687451 - HAL1 LINE L1 -117 2390 2003 297 313 28 68 chr1 36506419 36506595 -245687069 + L2 LINE L2 2955 3123 -149 222 245 0 0 chr1 36506601 36506650 -245687014 + A-rich Low_complexity Low_complexity 1 49 0 1349 128 9 18 chr1 36506794 36507020 -245686644 + AluJo SINE Alu 84 307 -5 481 310 55 0 chr1 36508407 36508552 -245685112 - MIR SINE MIR -107 155 3 208 219 37 37 chr1 36509825 36509907 -245683757 + (CAGAGA)n Simple_repeat Simple_repeat 3 84 0 32 0 0 0 chr1 36510519 36510551 -245683113 + GC_rich Low_complexity Low_complexity 1 32 0 22 42 0 0 chr1 36510600 36510624 -245683040 + GC_rich Low_complexity Low_complexity 1 24 0 1895 141 13 0 chr1 36511348 36511654 -245682010 - AluSx SINE Alu -2 310 1 246 289 0 0 chr1 36514174 36514226 -245679438 - L2 LINE L2 -261 3052 3001 311 303 96 32 chr1 36514395 36514583 -245679081 + L2 LINE L2 2974 3173 -140 707 97 10 0 chr1 36514707 36514810 -245678854 - L1MB7 LINE L1 -15 6169 6066 2054 122 0 3 chr1 36514810 36515114 -245678550 - AluSx SINE Alu -9 303 1 3256 86 10 57 chr1 36515546 36515893 -245677771 - MER4D LTR ERV1 -384 488 171 1405 178 36 4 chr1 36515893 36516174 -245677490 + AluJb SINE Alu 3 292 -20 3256 86 10 57 chr1 36516174 36516337 -245677327 - MER4D LTR ERV1 -701 171 2 4098 105 4 4 chr1 36516438 36517001 -245676663 - LTR6A LTR ERV1 -1 563 1 328 311 76 8 chr1 36517774 36517893 -245675771 - L2 LINE L2 -4 3268 3142 2131 111 0 0 chr1 36518082 36518380 -245675284 - AluSq SINE Alu -15 298 1 332 268 173 30 chr1 36518424 36518600 -245675064 - MIR SINE MIR -51 211 16 777 196 0 0 chr1 36518668 36518801 -245674863 + FLAM_C SINE Alu 1 133 0 2007 147 0 3 chr1 36518816 36519128 -245674536 + AluSx SINE Alu 1 311 -1 910 274 63 19 chr1 36519201 36519519 -245674145 - L2 LINE L2 -3 3310 2979 397 317 0 0 chr1 36519512 36519613 -245674051 - L2 LINE L2 -14 3299 3199 * 2067 79 68 0 chr1 36519703 36519982 -245673682 + AluSx SINE Alu 1 298 -14 1651 167 24 3 chr1 36520001 36520289 -245673375 + AluJo SINE Alu 2 295 -17 264 289 8 47 chr1 36520289 36520417 -245673247 + L1MEd LINE L1 1089 1211 -4908 1531 184 4 4 chr1 36520466 36520744 -245672920 + AluJb SINE Alu 21 298 -14 388 294 63 60 chr1 36520838 36521107 -245672557 - LTR38 LTR ERV1 0 556 287 9435 52 7 106 chr1 36521219 36522735 -245670929 + SVA Other Other 18 1382 -4 10441 103 18 31 chr1 36522735 36523042 -245670622 + Tigger1 DNA MER2_type 872 1182 -1236 1908 109 0 67 chr1 36523042 36523196 -245670468 + AluSx SINE Alu 1 125 -187 2054 104 13 3 chr1 36523196 36523495 -245670169 + AluSg SINE Alu 1 302 -8 1908 109 0 67 chr1 36523495 36523652 -245670012 + AluSx SINE Alu 125 291 -21 10441 103 18 31 chr1 36523652 36524227 -245669437 + Tigger1 DNA MER2_type 1182 1763 -655 2714 13 0 0 chr1 36524227 36524535 -245669129 + AluYa5 SINE Alu 1 308 -3 10441 103 18 31 chr1 36524535 36525219 -245668445 + Tigger1 DNA MER2_type 1763 2418 0 1918 152 0 0 chr1 36525604 36525901 -245667763 + AluY SINE Alu 4 300 -11 2076 116 0 0 chr1 36525921 36526222 -245667442 - AluSx SINE Alu -11 301 1 1170 259 141 43 chr1 36526244 36526631 -245667033 - L1M4c LINE L1 -4568 1816 1468 1554 178 24 10 chr1 36526631 36526929 -245666735 - AluJb SINE Alu -10 302 1 1170 259 141 43 chr1 36526929 36527363 -245666301 - L1M4c LINE L1 -4916 1468 944 2162 71 36 0 chr1 36527363 36527681 -245665983 - AluY SINE Alu 0 311 1 1170 259 141 43 chr1 36527681 36527778 -245665886 - L1M4c LINE L1 -5440 944 858 2225 95 0 0 chr1 36528464 36528760 -245664904 - AluSq SINE Alu -7 306 11 312 300 15 62 chr1 36529595 36529725 -245663939 - MER5A DNA MER1_type -4 185 62 1193 112 0 43 chr1 36529856 36529875 -245663789 + AluSg/x SINE Alu 118 136 -176 2238 77 17 0 chr1 36529875 36530173 -245663491 + AluSp SINE Alu 1 303 -10 1193 112 0 43 chr1 36530173 36530341 -245663323 + AluSg/x SINE Alu 136 297 -15 2023 101 7 17 chr1 36530345 36530641 -245663023 + AluSq SINE Alu 1 293 -20 2221 100 0 3 chr1 36530642 36530943 -245662721 + AluSx SINE Alu 1 300 -12 246 216 20 0 chr1 36530943 36530994 -245662670 - MER5A DNA MER1_type -61 128 77 376 237 181 47 chr1 36531186 36531401 -245662263 + L1ME LINE L1 5580 5823 -298 1463 195 0 4 chr1 36531417 36531679 -245661985 + AluJb SINE Alu 12 272 -40 1249 204 7 29 chr1 36531691 36531802 -245661862 + AluJo SINE Alu 27 139 -173 2136 78 11 3 chr1 36531802 36532112 -245661552 + AluSp SINE Alu 2 313 0 1249 204 7 29 chr1 36532112 36532274 -245661390 + AluJo SINE Alu 139 295 -17 1531 156 35 0 chr1 36532440 36532697 -245660967 - AluJb SINE Alu -46 266 1 2232 74 0 17 chr1 36532720 36533019 -245660645 + AluY SINE Alu 3 296 -15 1623 153 11 8 chr1 36533108 36533370 -245660294 + AluJb SINE Alu 6 268 -44 664 88 53 26 chr1 36534512 36534626 -245659038 + MER47A DNA MER2_type 45 161 -205 2242 95 3 0 chr1 36534648 36534954 -245658710 + AluSq SINE Alu 1 307 -6 515 272 66 42 chr1 36535702 36535756 -245657908 + MIR SINE MIR 44 95 -167 1620 174 33 4 chr1 36535756 36536032 -245657632 - AluJb SINE Alu 0 312 29 515 272 66 42 chr1 36536032 36536190 -245657474 + MIR SINE MIR 95 261 -1 669 172 78 117 chr1 36536422 36536602 -245657062 + MIR SINE MIR 52 224 -38 244 220 66 33 chr1 36537185 36537276 -245656388 - L1P LINE L1 -743 5408 5315 472 289 75 43 chr1 36537568 36537803 -245655861 - MIR SINE MIR -1 261 17 801 159 19 125 chr1 36537985 36538007 -245655657 + MER5A DNA MER1_type 4 27 -162 2109 101 0 44 chr1 36538007 36538323 -245655341 + AluSx SINE Alu 1 302 -10 801 159 19 125 chr1 36538323 36538508 -245655156 + MER5A DNA MER1_type 27 189 0 372 285 140 18 chr1 36538596 36538668 -245654996 + MIR SINE MIR 2 64 -198 1880 135 46 0 chr1 36538668 36538950 -245654714 + AluSx SINE Alu 1 295 -17 372 285 140 18 chr1 36538950 36539098 -245654566 + MIR SINE MIR 64 249 -13 367 346 154 31 chr1 36539137 36539495 -245654169 + L2 LINE L2 2871 3272 0 1778 131 53 0 chr1 36539830 36540112 -245653552 + AluSg SINE Alu 1 297 -13 1783 149 27 7 chr1 36540241 36540542 -245653122 + AluJo SINE Alu 1 307 -5 245 217 0 0 chr1 36540544 36540590 -245653074 + MIR SINE MIR 30 75 -133 946 214 229 23 chr1 36540728 36540811 -245652853 + L2 LINE L2 2444 2509 -805 2294 140 9 6 chr1 36540811 36541154 -245652510 + MER2 DNA MER2_type 1 344 0 946 214 229 23 chr1 36541154 36541420 -245652244 + L2 LINE L2 2509 2865 -449 442 275 108 21 chr1 36541486 36541726 -245651938 + MIR SINE MIR 2 262 0 302 297 23 39 chr1 36541727 36541863 -245651801 - MER5B DNA MER1_type 0 178 60 235 175 0 0 chr1 36542558 36542598 -245651066 + A-rich Low_complexity Low_complexity 3 42 0 416 301 65 80 chr1 36542642 36542685 -245650979 + L3 LINE CR1 592 634 -943 2360 64 0 3 chr1 36542685 36542980 -245650684 - AluSx SINE Alu -18 294 1 416 301 65 80 chr1 36542980 36543261 -245650403 + L3 LINE CR1 634 911 -666 302 282 179 8 chr1 36543245 36543362 -245650302 - L2 LINE L2 -9 3263 3127 * 331 222 60 43 chr1 36543402 36543519 -245650145 + L1MCa LINE L1 2000 2118 -4308 1886 131 3 33 chr1 36543844 36544149 -245649515 + AluJo SINE Alu 2 297 -15 836 188 171 6 chr1 36544206 36544382 -245649282 + MER3 DNA MER1_type 5 209 0 2119 97 3 3 chr1 36544549 36544837 -245648827 + AluSg SINE Alu 1 288 -22 342 286 64 108 chr1 36544869 36545002 -245648662 - MIR SINE MIR -15 247 132 868 165 0 0 chr1 36545002 36545135 -245648529 + FLAM_C SINE Alu 1 133 0 342 286 64 108 chr1 36545135 36545253 -245648411 - MIR SINE MIR -130 132 10 1577 145 59 38 chr1 36546053 36546342 -245647322 + AluJb SINE Alu 1 295 -17 897 130 0 36 chr1 36546583 36546721 -245646943 - FLAM_C SINE Alu 0 133 1 186 287 81 0 chr1 36547173 36547260 -245646404 - MIR SINE MIR -132 130 37 211 269 97 43 chr1 36548302 36548395 -245645269 - MIR SINE MIR -162 100 3 2513 70 0 0 chr1 36549118 36549431 -245644233 + AluSq SINE Alu 1 313 0 456 104 26 0 chr1 36549431 36549508 -245644156 + Tigger1 DNA MER2_type 1613 1691 -727 2157 109 3 0 chr1 36549510 36549804 -245643860 + AluSg SINE Alu 1 295 -15 656 133 10 0 chr1 36549804 36549902 -245643762 + AluSg/x SINE Alu 194 292 -18 2422 59 0 3 chr1 36549902 36550209 -245643455 + AluY SINE Alu 1 306 -5 414 245 53 0 chr1 36550210 36550304 -245643360 - Charlie1 DNA MER1_type -2662 99 1 436 322 28 38 chr1 36550357 36550568 -245643096 - L2 LINE L2 -1 3312 3104 1022 144 80 0 chr1 36550607 36550794 -245642870 - MER3 DNA MER1_type -7 202 1 1497 291 265 22 chr1 36550805 36551535 -245642129 - L2 LINE L2 -310 3003 2452 378 0 0 0 chr1 36551535 36551577 -245642087 + (TCTA)n Simple_repeat Simple_repeat 4 45 0 1497 291 265 22 chr1 36551577 36551604 -245642060 - L2 LINE L2 -861 2452 2433 2229 91 0 0 chr1 36551604 36551902 -245641762 + AluY SINE Alu 1 298 -13 1497 291 265 22 chr1 36551902 36552370 -245641294 - L2 LINE L2 -880 2433 1479 706 144 17 0 chr1 36552394 36552512 -245641152 - L1M4 LINE L1 -454 5720 5601 1113 192 9 9 chr1 36552520 36552744 -245640920 - AluJb SINE Alu -2 310 87 1714 198 15 1 chr1 36552744 36553312 -245640352 - L1M4 LINE L1 -577 5607 5028 510 248 82 114 chr1 36553495 36554072 -245639592 + L1MC4 LINE L1 7193 7750 -292 24 32 0 0 chr1 36554072 36554103 -245639561 + AT_rich Low_complexity Low_complexity 1 31 0 627 258 148 13 chr1 36554171 36554489 -245639175 + L1ME4a LINE L1 5536 5896 -225 313 229 12 60 chr1 36554526 36554609 -245639055 + L1ME4a LINE L1 5973 6051 -70 719 370 26 9 chr1 36554609 36554658 -245639006 + L3 LINE CR1 1228 1275 -302 2091 105 26 0 chr1 36554658 36554962 -245638702 + AluSx SINE Alu 1 312 0 719 370 26 9 chr1 36554962 36555255 -245638409 + L3 LINE CR1 1275 1576 -1 290 309 226 32 chr1 36556070 36556287 -245637377 - MIR SINE MIR -2 260 2 1227 189 21 105 chr1 36557221 36557554 -245636110 - AluYb8 SINE Alu -13 305 1 1720 127 0 4 chr1 36558457 36558709 -245634955 - AluY SINE Alu -59 252 2 357 275 124 43 chr1 36558710 36558943 -245634721 - L1ME LINE L1 -349 5772 5521 2179 82 3 17 chr1 36558948 36559242 -245634422 + AluSp SINE Alu 1 290 -23 21 57 0 0 chr1 36560533 36560568 -245633096 + AT_rich Low_complexity Low_complexity 1 35 0 316 249 42 106 chr1 36565100 36565289 -245628375 - MIR3 SINE MIR -8 200 24 553 306 105 5 chr1 36567297 36567506 -245626158 - MIR SINE MIR -16 246 17 253 379 41 0 chr1 36567874 36568019 -245625645 - MIR3 SINE MIR -38 170 20 203 149 30 30 chr1 36568254 36568321 -245625343 + CT-rich Low_complexity Low_complexity 1 67 0 2070 91 14 0 chr1 36568901 36569186 -245624478 + AluSx SINE Alu 1 289 -23 233 282 0 39 chr1 36569191 36569269 -245624395 + L2 LINE L2 3197 3271 -1 353 268 0 0 chr1 36569276 36569358 -245624306 - L2 LINE L2 -2 3311 3230 2212 100 3 0 chr1 36569745 36570045 -245623619 - AluSq SINE Alu -10 303 3 327 308 37 0 chr1 36570076 36570183 -245623481 - MIR SINE MIR -99 163 53 362 216 0 0 chr1 36570461 36570535 -245623129 - MIR SINE MIR -112 150 77 263 296 96 96 chr1 36570615 36570959 -245622705 - L2 LINE L2 -51 3221 2878 879 279 120 36 chr1 36571072 36571790 -245621874 - L2 LINE L2 -1 3312 2530 199 267 0 19 chr1 36571977 36572082 -245621582 + G-rich Low_complexity Low_complexity 3 105 0 274 269 13 0 chr1 36572180 36572258 -245621406 - MIR SINE MIR -147 115 37 484 207 41 8 chr1 36572776 36572897 -245620767 + MIR SINE MIR 67 191 -71 286 304 234 25 chr1 36573663 36573864 -245619800 + MIR SINE MIR 20 262 0 805 126 160 46 chr1 36574932 36575107 -245618557 - AluJb SINE Alu -82 230 36 2249 71 17 0 chr1 36575154 36575448 -245618216 - AluY SINE Alu -12 299 1 1972 118 0 30 chr1 36575479 36575614 -245618050 + AluSg SINE Alu 1 138 -172 2259 77 17 0 chr1 36575614 36575912 -245617752 + AluSp SINE Alu 1 303 -10 1972 118 0 30 chr1 36575912 36576080 -245617584 + AluSg SINE Alu 138 295 -15 2230 73 0 27 chr1 36576084 36576385 -245617279 + AluY SINE Alu 1 293 -18 202 200 0 0 chr1 36576690 36576730 -245616934 + MIR SINE MIR 78 117 -91 410 311 30 24 chr1 36577828 36577995 -245615669 - MIR SINE MIR -2 260 93 518 298 15 0 chr1 36578651 36578664 -245615000 + MIR SINE MIR 30 41 -221 1689 153 13 23 chr1 36578664 36578827 -245614837 - AluJo SINE Alu -15 297 137 2306 77 0 3 chr1 36578827 36579125 -245614539 - AluY SINE Alu -14 297 1 1689 153 13 23 chr1 36579125 36579261 -245614403 - AluJo SINE Alu -175 137 1 518 298 15 0 chr1 36579261 36579425 -245614239 + MIR SINE MIR 41 211 -51 437 291 209 14 chr1 36580884 36581162 -245612502 + L2 LINE L2 2506 2837 -477 210 330 21 43 chr1 36581225 36581319 -245612345 + L2 LINE L2 3222 3313 0 1046 193 60 5 chr1 36583853 36584071 -245609593 - MIR SINE MIR -5 257 28 381 273 136 7 chr1 36584269 36584423 -245609241 + MIR SINE MIR 78 251 -11 1765 208 69 19 chr1 36585196 36585672 -245607992 - L1MC4 LINE L1 -3 8039 7540 316 257 40 20 chr1 36585673 36585774 -245607890 - MIR3 SINE MIR -49 159 57 290 244 67 3 chr1 36585809 36585944 -245607720 - MIR SINE MIR -5 257 71 312 333 29 22 chr1 36586243 36586381 -245607283 + MIR SINE MIR 124 262 0 228 308 120 8 chr1 36587159 36587276 -245606388 - L2 LINE L2 -42 3230 3101 307 304 54 9 chr1 36587413 36587525 -245606139 - MIR SINE MIR -114 148 32 385 269 135 14 chr1 36587726 36587867 -245605797 + MIR SINE MIR 104 261 -1 182 365 54 0 chr1 36588214 36588288 -245605376 - L2 LINE L2 -200 3072 2995 192 40 0 0 chr1 36589458 36589483 -245604181 + (TCCC)n Simple_repeat Simple_repeat 4 28 0 258 333 99 25 chr1 36592659 36592821 -245600843 + MIR SINE MIR 20 193 -69 427 245 170 31 chr1 36593631 36593790 -245599874 - MIR SINE MIR -16 246 66 265 281 0 0 chr1 36594213 36594277 -245599387 + MIR SINE MIR 81 144 -118 225 281 132 18 chr1 36594442 36594556 -245599108 - L2 LINE L2 0 3272 3146 250 293 61 0 chr1 36594646 36594745 -245598919 + MIR SINE MIR 79 183 -79 204 40 0 0 chr1 36595177 36595202 -245598462 + (A)n Simple_repeat Simple_repeat 1 25 0 1758 166 3 30 chr1 36595204 36595506 -245598158 + AluJo SINE Alu 1 294 -18 358 266 28 18 chr1 36595588 36595697 -245597967 + MIR3 SINE MIR 67 176 -32 1140 128 137 53 chr1 36596041 36596267 -245597397 - AluJb SINE Alu -28 284 40 384 274 35 0 chr1 36596326 36596439 -245597225 - MIR SINE MIR -39 223 107 359 248 10 8 chr1 36596806 36596935 -245596729 - MIR SINE MIR -59 149 22 201 273 25 25 chr1 36597176 36597337 -245596327 + (CCCCG)n Simple_repeat Simple_repeat 2 162 0 23 0 0 0 chr1 36597383 36597406 -245596258 + GC_rich Low_complexity Low_complexity 1 23 0 205 204 19 0 chr1 36597536 36597590 -245596074 + MIR SINE MIR 67 121 -87 1848 78 0 82 chr1 36597760 36598030 -245595634 + AluSx SINE Alu 1 248 -64 2487 52 3 39 chr1 36598904 36599211 -245594453 + AluY SINE Alu 1 296 -15 2407 105 0 3 chr1 36599478 36599791 -245593873 + AluSx SINE Alu 1 312 0 479 258 24 23 chr1 36600078 36600247 -245593417 - MIR SINE MIR -57 151 13 351 297 10 0 chr1 36600512 36600613 -245593051 + MIR SINE MIR 45 146 -62 2097 113 4 0 chr1 36601208 36601482 -245592182 + AluSx SINE Alu 1 275 -37 282 194 0 0 chr1 36601520 36601582 -245592082 + CT-rich Low_complexity Low_complexity 3 64 0 2093 130 7 3 chr1 36601584 36601883 -245591781 - AluSx SINE Alu -1 311 12 1887 145 0 14 chr1 36601906 36602188 -245591476 - AluJb SINE Alu -21 291 14 189 0 0 0 chr1 36602196 36602217 -245591447 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2384 98 0 3 chr1 36602783 36603089 -245590575 - AluSx SINE Alu -7 305 1 21 0 0 0 chr1 36603090 36603111 -245590553 + AT_rich Low_complexity Low_complexity 1 21 0 867 320 176 9 chr1 36603192 36603967 -245589697 + L2 LINE L2 1613 2516 -798 2275 87 0 52 chr1 36604072 36604382 -245589282 - AluSg SINE Alu -16 294 1 234 231 19 0 chr1 36604388 36604440 -245589224 + L2 LINE L2 2689 2741 -573 1179 176 59 14 chr1 36604461 36604683 -245588981 + AluJo SINE Alu 1 232 -80 737 139 8 0 chr1 36604716 36604845 -245588819 + L1M4 LINE L1 4477 4606 -1540 675 222 30 7 chr1 36604855 36605028 -245588636 + L1PB4 LINE L1 5994 6165 -1 3377 181 15 39 chr1 36605033 36605298 -245588366 + L1M4 LINE L1 4614 4884 -1300 1570 189 10 45 chr1 36605298 36605611 -245588053 - AluJo SINE Alu -10 302 1 3377 181 15 39 chr1 36605611 36606364 -245587300 + L1M4 LINE L1 4884 5607 -577 1382 159 9 9 chr1 36606364 36606590 -245587074 + AluJb SINE Alu 87 312 0 714 144 17 0 chr1 36606596 36606714 -245586950 + L1M4 LINE L1 5601 5720 -454 1502 293 268 19 chr1 36606738 36607206 -245586458 + L2 LINE L2 1479 1829 -1484 2364 91 0 0 chr1 36607206 36607504 -245586160 - AluY SINE Alu -13 298 1 1502 293 268 19 chr1 36607504 36607531 -245586133 + L2 LINE L2 1829 1848 -1465 414 0 0 0 chr1 36607531 36607577 -245586087 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 1502 293 268 19 chr1 36607577 36608301 -245585363 + L2 LINE L2 1848 3003 -310 1030 144 80 0 chr1 36608312 36608499 -245585165 + MER3 DNA MER1_type 1 202 -7 436 318 28 38 chr1 36608538 36608749 -245584915 + L2 LINE L2 3104 3312 -1 415 245 53 0 chr1 36608802 36608896 -245584768 + Charlie1 DNA MER1_type 1 99 -2662 2576 58 0 3 chr1 36608897 36609205 -245584459 - AluY SINE Alu -4 307 1 613 133 10 0 chr1 36609205 36609303 -245584361 - AluSg/x SINE Alu -18 292 194 2310 105 3 0 chr1 36609303 36609597 -245584067 - AluSg SINE Alu -15 295 1 9437 104 12 29 chr1 36609599 36609677 -245583987 - Tigger1 DNA MER2_type -727 1691 1613 2587 74 3 0 chr1 36609677 36609989 -245583675 - AluSp SINE Alu 0 313 1 9437 104 12 29 chr1 36609989 36611129 -245582535 - Tigger1 DNA MER2_type -805 1613 499 2561 69 0 0 chr1 36611129 36611435 -245582229 - AluY SINE Alu -5 306 1 9437 104 12 29 chr1 36611435 36611686 -245581978 - Tigger1 DNA MER2_type -1919 499 245 1814 172 71 0 chr1 36611686 36612011 -245581653 + MER7A DNA MER2_type 1 346 0 1377 163 8 16 chr1 36612011 36612256 -245581408 - Tigger1 DNA MER2_type -2174 244 2 1554 167 42 58 chr1 36612256 36612552 -245581112 + Charlie1 DNA MER1_type 2339 2638 -123 2137 146 0 0 chr1 36612552 36612846 -245580818 - AluJb SINE Alu -18 294 1 1554 167 42 58 chr1 36612846 36612920 -245580744 + Charlie1 DNA MER1_type 2638 2704 -57 2315 96 0 3 chr1 36612920 36613213 -245580451 - AluSq SINE Alu -21 292 1 1554 167 42 58 chr1 36613213 36613271 -245580393 + Charlie1 DNA MER1_type 2704 2761 0 1832 156 19 29 chr1 36613649 36613964 -245579700 + AluJb SINE Alu 1 312 0 2410 104 0 0 chr1 36614351 36614658 -245579006 - AluSg SINE Alu -3 307 1 798 239 49 49 chr1 36614742 36614915 -245578749 + MIR SINE MIR 8 183 -79 880 92 0 63 chr1 36614915 36615057 -245578607 + FLAM_C SINE Alu 1 133 0 798 239 49 49 chr1 36615057 36615130 -245578534 + MIR SINE MIR 182 254 -8 2277 82 3 14 chr1 36615131 36615423 -245578241 - AluSc SINE Alu -20 289 1 754 207 110 90 chr1 36615713 36616003 -245577661 - MLT1K LTR MaLR 0 588 293 1981 115 45 10 chr1 36616223 36616511 -245577153 - AluSx SINE Alu -9 303 6 345 265 10 0 chr1 36617021 36617119 -245576545 + MIR3 SINE MIR 109 207 -1 248 186 86 29 chr1 36617202 36617272 -245576392 - LTR33A LTR ERVL -2 521 448 2376 98 3 3 chr1 36617292 36617598 -245576066 + AluSx SINE Alu 1 306 -6 2107 103 53 0 chr1 36617629 36617910 -245575754 + AluSq SINE Alu 1 296 -17 3325 143 53 114 chr1 36618076 36618209 -245575455 + L1MB7 LINE L1 5195 5334 -850 2513 90 0 0 chr1 36618209 36618520 -245575144 + AluY SINE Alu 1 311 0 3325 143 53 114 chr1 36618520 36618700 -245574964 + L1MB7 LINE L1 5334 5523 -661 269 143 0 0 chr1 36618700 36618742 -245574922 - MLT1K LTR MaLR -254 334 293 3325 143 53 114 chr1 36618742 36619054 -245574610 + L1MB7 LINE L1 5523 5798 -386 2197 130 0 0 chr1 36619054 36619362 -245574302 + AluSx SINE Alu 1 308 -4 3325 143 53 114 chr1 36619362 36619622 -245574042 + L1MB7 LINE L1 5798 6072 -112 9572 189 56 61 chr1 36619622 36622104 -245571560 - HERVS71 LTR ERV1 -6507 2471 4 4090 67 10 38 chr1 36622106 36622686 -245570978 - LTR6A LTR ERV1 0 564 1 1855 140 59 38 chr1 36622686 36622746 -245570918 - L1MA7 LINE L1 -143 6148 6091 2029 144 105 5 chr1 36622746 36623135 -245570529 - MSTA LTR MaLR 0 428 1 1855 140 59 38 chr1 36623135 36623177 -245570487 - L1MA7 LINE L1 -200 6091 6051 288 0 0 0 chr1 36623177 36623209 -245570455 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1855 140 59 38 chr1 36623209 36623497 -245570167 - L1MA7 LINE L1 -240 6051 5749 344 302 22 28 chr1 36623865 36624044 -245569620 - ERVL LTR ERVL -350 5414 5237 * 911 310 75 28 chr1 36624042 36624761 -245568903 - ERVL LTR ERVL -2866 2898 2018 2643 134 40 15 chr1 36624761 36625217 -245568447 - MLT1C LTR MaLR 0 467 1 911 310 75 28 chr1 36625217 36625596 -245568068 - ERVL LTR ERVL -3746 2018 1658 2181 124 0 10 chr1 36625882 36626181 -245567483 - AluSx SINE Alu -16 296 1 2047 152 0 7 chr1 36626183 36626479 -245567185 - AluJo SINE Alu -18 294 1 2251 118 0 0 chr1 36626577 36626873 -245566791 + AluSx SINE Alu 1 296 -16 292 338 56 24 chr1 36626957 36627170 -245566494 - ERVL LTR ERVL -4529 956 737 327 290 70 30 chr1 36627794 36627994 -245565670 - LTR67 LTR ERVL 0 557 350 846 290 121 22 chr1 36628533 36628937 -245564727 + L2 LINE L2 2804 3247 -66 2543 65 0 3 chr1 36629020 36629326 -245564338 - AluY SINE Alu -6 305 1 204 238 205 33 chr1 36629547 36629669 -245563995 - MIR SINE MIR -50 212 70 2098 112 3 3 chr1 36630170 36630456 -245563208 + AluSx SINE Alu 1 286 -26 2346 82 3 3 chr1 36630608 36630901 -245562763 - AluSc SINE Alu -16 293 1 2310 101 3 3 chr1 36630903 36631210 -245562454 - AluSx SINE Alu -5 307 1 1859 126 31 11 chr1 36631534 36631820 -245561844 - AluSx SINE Alu -20 292 1 2052 152 10 0 chr1 36633201 36633504 -245560160 + AluJo SINE Alu 1 306 -6 258 194 0 0 chr1 36633903 36633965 -245559699 + A-rich Low_complexity Low_complexity 1 62 0 1965 131 21 0 chr1 36634956 36635239 -245558425 - AluSx SINE Alu -9 303 15 222 231 77 0 chr1 36635902 36635967 -245557697 + MIR SINE MIR 39 108 -100 305 346 27 32 chr1 36635985 36636170 -245557494 + MER5A DNA MER1_type 3 186 -3 407 248 48 48 chr1 36636000 36636145 -245557519 - MER5B DNA MER1_type -3 175 31 642 311 87 31 chr1 36636165 36636454 -245557210 - L3 LINE CR1 -44 1533 1229 1680 176 38 3 chr1 36636713 36637002 -245556662 + AluJo SINE Alu 1 299 -13 2223 123 10 0 chr1 36637034 36637335 -245556329 + AluSg SINE Alu 1 304 -6 2275 109 0 0 chr1 36637587 36637881 -245555783 + AluY SINE Alu 1 294 -17 180 0 0 0 chr1 36637884 36637904 -245555760 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 281 299 150 17 chr1 36638328 36638529 -245555135 - MIR SINE MIR -13 249 16 2555 62 0 3 chr1 36638630 36638937 -245554727 + AluY SINE Alu 1 306 -5 187 309 36 18 chr1 36638996 36639051 -245554613 + MIR3 SINE MIR 15 70 -138 2054 107 17 27 chr1 36639101 36639400 -245554264 + AluSc SINE Alu 1 296 -13 198 306 37 74 chr1 36639400 36639508 -245554156 + MIR SINE MIR 126 229 -33 250 254 52 10 chr1 36640072 36640153 -245553511 + MIR SINE MIR 16 97 -111 545 269 183 18 chr1 36640371 36640462 -245553202 + MIR SINE MIR 3 78 -184 2582 61 0 0 chr1 36640462 36640759 -245552905 - AluY SINE Alu -14 297 1 545 269 183 18 chr1 36640759 36640886 -245552778 + MIR SINE MIR 78 257 -5 1660 165 42 32 chr1 36641634 36641943 -245551721 - AluJb SINE Alu 0 312 1 253 260 173 55 chr1 36642890 36643017 -245550647 + L2 LINE L2 3171 3312 -1 2325 100 3 0 chr1 36643149 36643450 -245550214 + AluSx SINE Alu 1 302 -10 200 182 0 0 chr1 36645669 36645702 -245547962 + (CA)n Simple_repeat Simple_repeat 2 34 0 2290 76 7 33 chr1 36645743 36646044 -245547620 - AluSx SINE Alu -19 293 1 1744 167 44 7 chr1 36646308 36646602 -245547062 - AluJb SINE Alu -1 311 7 2452 76 7 0 chr1 36646606 36646908 -245546756 - AluSc SINE Alu -5 304 1 2029 130 10 13 chr1 36647571 36647870 -245545794 - AluSx SINE Alu -14 298 1 1666 178 0 53 chr1 36648083 36648232 -245545432 + AluJo SINE Alu 1 125 -187 2261 82 0 26 chr1 36648232 36648535 -245545129 + AluSg SINE Alu 1 295 -15 1666 178 0 53 chr1 36648535 36648706 -245544958 + AluJo SINE Alu 125 304 -8 1484 161 51 71 chr1 36648734 36649045 -245544619 - AluJo SINE Alu -7 305 1 2506 73 0 10 chr1 36649670 36649983 -245543681 - AluSq SINE Alu -3 310 1 2332 97 3 0 chr1 36650228 36650528 -245543136 + AluSq SINE Alu 1 301 -12 296 355 47 55 chr1 36650648 36650904 -245542760 + L2 LINE L2 2903 3156 -116 2091 108 0 58 chr1 36651221 36651546 -245542118 + AluJb SINE Alu 3 308 -4 1730 148 0 93 chr1 36651719 36651855 -245541809 + AluJb SINE Alu 1 148 -164 2171 108 3 38 chr1 36651855 36652170 -245541494 + AluSx SINE Alu 1 304 -8 1730 148 0 93 chr1 36652170 36652377 -245541287 + AluJb SINE Alu 148 312 0 193 292 56 11 chr1 36652704 36652793 -245540871 + L2 LINE L2 2556 2648 -666 719 157 19 0 chr1 36652965 36653073 -245540591 - FLAM_A SINE Alu -30 112 3 2198 121 0 0 chr1 36653323 36653613 -245540051 + AluSx SINE Alu 1 290 -22 319 200 150 57 chr1 36653965 36654105 -245539559 - MER103 DNA DNA -1 165 13 2456 70 0 13 chr1 36654206 36654504 -245539160 + AluY SINE Alu 1 294 -17 2413 55 0 45 chr1 36655527 36655835 -245537829 + AluY SINE Alu 1 294 -17 963 199 6 6 chr1 36656243 36656424 -245537240 + AluJo SINE Alu 120 300 -12 1699 121 51 12 chr1 36656511 36656606 -245537058 + AluJo SINE Alu 26 116 -196 237 33 0 0 chr1 36656606 36656636 -245537028 + (TAA)n Simple_repeat Simple_repeat 2 31 0 1699 121 51 12 chr1 36656636 36656796 -245536868 + AluJo SINE Alu 116 291 -21 469 280 52 28 chr1 36657138 36657321 -245536343 + MIR3 SINE MIR 8 189 -67 21 104 0 0 chr1 36657400 36657477 -245536187 + AT_rich Low_complexity Low_complexity 1 77 0 2102 134 13 0 chr1 36657742 36658040 -245535624 - AluSx SINE Alu -10 302 1 2653 45 0 7 chr1 36659205 36659515 -245534149 + AluSx SINE Alu 1 308 -4 204 229 12 24 chr1 36660124 36660207 -245533457 + (CCG)n Simple_repeat Simple_repeat 1 82 0 207 248 0 30 chr1 36660240 36660341 -245533323 + G-rich Low_complexity Low_complexity 4 101 0 21 0 0 0 chr1 36660360 36660381 -245533283 + GC_rich Low_complexity Low_complexity 1 21 0 248 228 13 13 chr1 36660491 36660570 -245533094 + (CCG)n Simple_repeat Simple_repeat 2 80 0 225 234 0 0 chr1 36660696 36660743 -245532921 + (CGGGG)n Simple_repeat Simple_repeat 5 51 0 578 243 93 55 chr1 36661384 36661443 -245532221 - MLT1J LTR MaLR 0 511 456 1813 171 13 7 chr1 36661443 36661742 -245531922 - AluJo SINE Alu -11 301 1 578 243 93 55 chr1 36661742 36661921 -245531743 - MLT1J LTR MaLR -55 456 285 2594 58 0 0 chr1 36661921 36662230 -245531434 + AluY SINE Alu 1 309 -2 578 243 93 55 chr1 36662230 36662393 -245531271 - MLT1J LTR MaLR -226 285 41 1871 171 0 0 chr1 36662400 36662686 -245530978 + AluJb SINE Alu 1 286 -26 713 262 33 0 chr1 36662751 36662934 -245530730 - L2 LINE L2 -1216 2098 1910 329 211 36 79 chr1 36663026 36663222 -245530442 - MLT1J2 LTR MaLR -2 428 266 2162 90 18 0 chr1 36663264 36663567 -245530097 + AluSx SINE Alu 1 308 0 500 370 73 21 chr1 36664170 36664592 -245529072 - L2 LINE L2 -3 3269 2826 2159 131 3 6 chr1 36664595 36664908 -245528756 + AluSx SINE Alu 1 312 0 1135 148 0 0 chr1 36665121 36665310 -245528354 - L1MB3 LINE L1 0 6183 5995 2248 108 3 19 chr1 36665849 36666165 -245527499 - AluSx SINE Alu -1 311 1 2235 129 0 0 chr1 36666167 36666469 -245527195 - AluSx SINE Alu -10 302 1 239 341 88 22 chr1 36666694 36666876 -245526788 + L2 LINE L2 2449 2642 -672 245 307 60 46 chr1 36666917 36667135 -245526529 + L2 LINE L2 2817 3037 -235 496 233 31 8 chr1 36667216 36667345 -245526319 + MER94 DNA DNA 1 132 -2 371 229 158 0 chr1 36667382 36667532 -245526132 - MIR SINE MIR -54 208 36 1008 177 0 0 chr1 36667698 36667856 -245525808 - FAM SINE Alu -8 41 1 690 189 48 92 chr1 36667957 36668184 -245525480 - L2 LINE L2 0 3313 3097 203 222 156 11 chr1 36668177 36668267 -245525397 - L2 LINE L2 -775 2539 2437 * 186 43 0 0 chr1 36669207 36669230 -245524434 + (T)n Simple_repeat Simple_repeat 1 23 0 6567 78 13 33 chr1 36669242 36670390 -245523274 - SVA Other Other -551 1386 433 1264 91 23 91 chr1 36670407 36670792 -245522872 - SVA Other Other -520 866 508 5760 80 28 6 chr1 36670808 36671608 -245522056 - SVA Other Other -520 866 50 342 0 0 0 chr1 36671613 36671651 -245522013 + (GGGAGA)n Simple_repeat Simple_repeat 2 39 0 2398 54 34 0 chr1 36672138 36672257 -245521407 + AluY SINE Alu 2 115 -196 423 0 0 0 chr1 36672257 36672304 -245521360 + (CA)n Simple_repeat Simple_repeat 2 48 0 2398 54 34 0 chr1 36672304 36672478 -245521186 + AluY SINE Alu 115 305 -6 506 220 65 30 chr1 36672530 36672698 -245520966 - Charlie8 DNA MER1_type -2185 232 59 2310 89 0 0 chr1 36672850 36673159 -245520505 + AluSg SINE Alu 1 309 0 1025 127 18 0 chr1 36673935 36674100 -245519564 + Tigger5 DNA MER2_type 2130 2297 -26 916 103 0 0 chr1 36674110 36674227 -245519437 + AluSq/x SINE Alu 1 117 -195 370 80 0 0 chr1 36674227 36674277 -245519387 + Alu SINE Alu 246 295 -7 536 273 28 40 chr1 36674285 36674344 -245519320 - MIR SINE MIR -23 239 181 2145 119 7 0 chr1 36674344 36674639 -245519025 - AluSx SINE Alu -15 297 1 536 273 28 40 chr1 36674639 36674755 -245518909 - MIR SINE MIR -81 181 66 1756 166 3 11 chr1 36674784 36675068 -245518596 + AluJo SINE Alu 18 299 -13 402 21 0 0 chr1 36675137 36675184 -245518480 + (CA)n Simple_repeat Simple_repeat 1 47 0 285 246 56 8 chr1 36675342 36675468 -245518196 + L1ME4a LINE L1 5988 6119 -2 874 111 103 0 chr1 36675550 36675676 -245517988 + AluSx SINE Alu 1 139 -173 1352 106 17 0 chr1 36676301 36676480 -245517184 + AluSx SINE Alu 119 300 -10 624 242 71 79 chr1 36676552 36676804 -245516860 - MIR SINE MIR 0 262 13 349 201 175 25 chr1 36676897 36677019 -245516645 - MIR3 SINE MIR -40 168 42 281 291 17 68 chr1 36677398 36677515 -245516149 - MIR SINE MIR 0 262 152 271 299 0 13 chr1 36677517 36677594 -245516070 + MIR SINE MIR 31 106 -156 1014 200 98 117 chr1 36677594 36678013 -245515651 - L2 LINE L2 -3 3310 2898 2227 90 4 0 chr1 36678013 36678346 -245515318 + AluSc SINE Alu 1 334 0 1014 200 98 117 chr1 36678346 36678395 -245515269 - L2 LINE L2 -415 2898 2850 344 246 108 91 chr1 36678395 36678627 -245515037 + L2 LINE L2 3078 3313 0 369 0 0 0 chr1 36678630 36678671 -245514993 + (TCCA)n Simple_repeat Simple_repeat 3 43 0 583 253 7 33 chr1 36678776 36678926 -245514738 + MIR SINE MIR 36 181 -81 2196 120 3 0 chr1 36679294 36679593 -245514071 - AluSx SINE Alu -12 300 1 1727 48 68 0 chr1 36679653 36679859 -245513805 - AluY SINE Alu -91 220 1 634 250 95 0 chr1 36679859 36680027 -245513637 - MIR SINE MIR -58 204 21 331 252 130 23 chr1 36680420 36680551 -245513113 + MIR3 SINE MIR 12 156 -52 644 284 101 0 chr1 36681049 36681257 -245512407 - MIR SINE MIR -32 230 2 463 259 130 0 chr1 36681283 36681414 -245512250 - MIR3 SINE MIR -21 187 40 292 331 99 8 chr1 36681688 36681809 -245511855 + L2 LINE L2 2969 3100 -172 349 184 66 0 chr1 36682170 36682246 -245511418 + MLT1D LTR MaLR 259 339 -166 2474 93 0 0 chr1 36682310 36682612 -245511052 - AluSx SINE Alu -10 302 1 2433 74 13 3 chr1 36683483 36683782 -245509882 + AluSg SINE Alu 1 302 -8 1863 119 43 40 chr1 36684015 36684318 -245509346 - AluJb SINE Alu -8 304 1 337 274 29 103 chr1 36684376 36684551 -245509113 + MIR SINE MIR 48 209 -53 * 848 153 147 0 chr1 36684543 36684700 -245508964 + MER5A DNA MER1_type 10 189 0 197 340 110 0 chr1 36684836 36684936 -245508728 - L3 LINE CR1 -41 1536 1426 452 282 90 41 chr1 36685094 36685339 -245508325 - L3 LINE CR1 -507 1070 814 664 277 78 19 chr1 36685722 36685890 -245507774 + MIR SINE MIR 23 180 -82 2408 96 0 0 chr1 36685890 36686192 -245507472 + AluSx SINE Alu 1 302 -10 2503 85 0 3 chr1 36686192 36686498 -245507166 + AluY SINE Alu 1 305 -6 664 277 78 19 chr1 36686498 36686534 -245507130 + MIR SINE MIR 179 240 -22 266 308 13 0 chr1 36686739 36686817 -245506847 + L2 LINE L2 3197 3275 -38 2219 113 0 44 chr1 36686863 36687182 -245506482 + AluSx SINE Alu 1 305 -7 221 250 0 0 chr1 36687192 36687248 -245506416 + (TGAA)n Simple_repeat Simple_repeat 2 57 0 444 202 78 39 chr1 36688129 36688258 -245505406 + MIR SINE MIR 79 212 -50 228 309 62 0 chr1 36689035 36689116 -245504548 + MIR SINE MIR 63 148 -114 2028 153 10 0 chr1 36689116 36689423 -245504241 - AluJo SINE Alu -2 310 1 321 223 51 88 chr1 36689466 36689656 -245504008 + MIR SINE MIR 36 219 -43 213 220 0 20 chr1 36689939 36689989 -245503675 + MIR SINE MIR 38 86 -122 414 119 48 71 chr1 36690064 36690148 -245503516 + MLT2B1 LTR ERVL 341 422 -98 230 239 43 54 chr1 36690172 36690264 -245503400 + MIR SINE MIR 63 153 -109 2215 100 0 10 chr1 36690308 36690619 -245503045 + AluSg SINE Alu 1 308 -2 2384 66 10 0 chr1 36690664 36690969 -245502695 - AluY SINE Alu -3 308 1 384 278 47 24 chr1 36691061 36691230 -245502434 + L2 LINE L2 2907 3079 -193 255 217 22 11 chr1 36691746 36691838 -245501826 + CT-rich Low_complexity Low_complexity 4 96 0 2136 116 0 0 chr1 36691848 36692140 -245501524 - AluSx SINE Alu -20 292 1 1916 152 3 3 chr1 36692140 36692443 -245501221 - AluJo SINE Alu -9 303 1 198 354 89 0 chr1 36693221 36693300 -245500364 + MIR SINE MIR 36 121 -87 209 329 29 14 chr1 36693439 36693509 -245500155 + MIR SINE MIR 37 107 -101 247 265 204 0 chr1 36693637 36693735 -245499929 + L2 LINE L2 3129 3246 -26 192 301 96 0 chr1 36694515 36694588 -245499076 + L2 LINE L2 3154 3233 -39 354 304 16 8 chr1 36694728 36694853 -245498811 - MIR3 SINE MIR -78 130 5 182 312 13 26 chr1 36695139 36695216 -245498448 + MIR SINE MIR 182 257 -5 569 276 93 57 chr1 36695255 36695439 -245498225 + MIR SINE MIR 8 205 -57 1830 117 55 14 chr1 36695439 36695561 -245498103 + AluSx SINE Alu 1 117 -195 2797 0 0 0 chr1 36695561 36695868 -245497796 + AluYa5 SINE Alu 1 307 -4 1830 117 55 14 chr1 36695868 36696036 -245497628 + AluSx SINE Alu 117 303 -9 569 276 93 57 chr1 36696036 36696097 -245497567 + MIR SINE MIR 205 262 0 477 306 142 38 chr1 36697253 36697514 -245496150 + L2 LINE L2 2985 3272 0 356 316 103 0 chr1 36697518 36697635 -245496029 - MIR SINE MIR -108 154 26 533 285 130 53 chr1 36697855 36698030 -245495634 + MIR SINE MIR 8 203 -59 2010 128 3 0 chr1 36698030 36698326 -245495338 - AluSx SINE Alu -14 298 2 533 285 130 53 chr1 36698326 36698357 -245495307 + MIR SINE MIR 203 230 -32 666 269 152 75 chr1 36698623 36699077 -245494587 + MLT1K LTR MaLR 100 588 0 245 325 65 0 chr1 36699115 36699192 -245494472 - L2 LINE L2 0 3272 3191 524 236 203 0 chr1 36699388 36699536 -245494128 + MLT1K LTR MaLR 156 333 -255 225 268 72 21 chr1 36699614 36699711 -245493953 - L2 LINE L2 -3 3269 3168 312 267 82 0 chr1 36699825 36699971 -245493693 - L1ME4a LINE L1 -25 6096 5939 1293 146 51 8 chr1 36699981 36700234 -245493430 + L1MD3 LINE L1 7732 7995 0 321 83 0 83 chr1 36700267 36700327 -245493337 + FLAM_A SINE Alu 79 133 0 272 260 256 25 chr1 36700339 36700581 -245493083 - L1ME4a LINE L1 -208 5913 5616 314 254 100 9 chr1 36700594 36700704 -245492960 - MIR SINE MIR -10 252 133 419 314 54 27 chr1 36701277 36701462 -245492202 - MIR SINE MIR -61 201 12 1760 107 176 14 chr1 36701782 36702072 -245491592 - MER1B DNA MER1_type 0 337 1 2155 111 0 7 chr1 36702451 36702758 -245490906 - AluSg SINE Alu -5 305 1 438 286 233 14 chr1 36703582 36703792 -245489872 + MIR SINE MIR 7 262 0 207 227 253 0 chr1 36704036 36704111 -245489553 - MIR SINE MIR -96 112 19 482 253 104 40 chr1 36704352 36704554 -245489110 + MIR SINE MIR 16 230 -32 311 338 58 7 chr1 36705273 36705427 -245488237 - MIR SINE MIR -6 256 95 208 286 24 24 chr1 36705406 36705490 -245488174 - MIR3 SINE MIR -122 86 3 * 21 0 0 0 chr1 36706366 36706387 -245487277 + AT_rich Low_complexity Low_complexity 1 21 0 1729 181 0 3 chr1 36708384 36708687 -245484977 + AluJb SINE Alu 1 302 -10 236 30 30 0 chr1 36708754 36708787 -245484877 + (CA)n Simple_repeat Simple_repeat 1 34 0 266 230 0 40 chr1 36710194 36710268 -245483396 + A-rich Low_complexity Low_complexity 5 75 0 1932 117 27 7 chr1 36711378 36711676 -245481988 + AluSx SINE Alu 1 304 -8 904 126 0 30 chr1 36711843 36711978 -245481686 + MER2 DNA MER2_type 2 132 -213 2284 89 0 0 chr1 36711978 36712280 -245481384 - AluY SINE Alu -9 302 1 1214 145 9 41 chr1 36712282 36712448 -245481216 - AluJo SINE Alu -15 297 127 217 47 47 23 chr1 36712448 36712491 -245481173 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 2209 78 0 3 chr1 36712491 36712774 -245480890 - AluSg SINE Alu -28 282 1 1214 145 9 41 chr1 36712774 36712827 -245480837 - AluJo SINE Alu -183 129 84 516 233 93 56 chr1 36712829 36713044 -245480620 + MER2 DNA MER2_type 123 345 0 1471 180 3 39 chr1 36713525 36713831 -245479833 - AluJb SINE Alu -13 299 5 278 152 0 0 chr1 36714154 36714200 -245479464 + Alu SINE Alu 249 294 -6 204 346 13 0 chr1 36714288 36714366 -245479298 + MIR SINE MIR 30 108 -100 338 257 69 22 chr1 36715499 36715668 -245477996 + L1ME LINE L1 5653 5824 -297 369 0 0 0 chr1 36715958 36715999 -245477665 + (CA)n Simple_repeat Simple_repeat 2 42 0 462 308 93 0 chr1 36716157 36716329 -245477335 - MIR SINE MIR -7 255 68 2104 119 0 0 chr1 36716332 36716626 -245477038 + AluSx SINE Alu 1 294 -18 1909 120 10 10 chr1 36716634 36716926 -245476738 + AluSx SINE Alu 1 292 -20 1987 134 7 3 chr1 36718121 36718426 -245475238 - AluSx SINE Alu -6 306 1 1268 209 93 14 chr1 36719050 36719171 -245474493 + AluJo SINE Alu 1 111 -191 306 0 0 0 chr1 36719171 36719205 -245474459 + (CAA)n Simple_repeat Simple_repeat 3 36 0 1268 209 93 14 chr1 36719205 36719361 -245474303 + AluJo SINE Alu 111 300 -2 2259 90 7 0 chr1 36719658 36719957 -245473707 + AluSx SINE Alu 1 301 -11 695 161 265 0 chr1 36720001 36720163 -245473501 + MER3 DNA MER1_type 5 209 0 815 186 93 89 chr1 36720376 36720612 -245473052 + MIR SINE MIR 26 262 0 555 218 14 56 chr1 36720642 36720675 -245472989 + MIR SINE MIR 117 150 -112 2064 116 7 19 chr1 36720675 36720985 -245472679 + AluSg SINE Alu 2 307 -3 555 218 14 56 chr1 36720985 36721093 -245472571 + MIR SINE MIR 150 252 -10 456 272 172 11 chr1 36721178 36721358 -245472306 + MIR SINE MIR 48 256 -6 505 279 85 36 chr1 36721366 36721613 -245472051 + MIR SINE MIR 2 260 -2 231 292 92 33 chr1 36721637 36721757 -245471907 - L2 LINE L2 0 3313 3187 1008 128 12 6 chr1 36721955 36722141 -245471523 - AluJb SINE Alu 0 312 127 2245 92 0 3 chr1 36722296 36722601 -245471063 + AluSc SINE Alu 1 304 -5 1934 111 47 10 chr1 36722613 36722911 -245470753 + AluSx SINE Alu 1 309 -3 2242 85 0 28 chr1 36723229 36723547 -245470117 + AluSg1 SINE Alu 1 309 0 766 247 87 23 chr1 36723602 36723821 -245469843 + MIR SINE MIR 17 249 -13 359 268 148 21 chr1 36723952 36723991 -245469673 - MER5A DNA MER1_type -26 163 130 2034 91 30 20 chr1 36723991 36724289 -245469375 + AluSp SINE Alu 1 301 -12 359 268 148 21 chr1 36724289 36724391 -245469273 - MER5A DNA MER1_type -59 130 4 293 269 173 10 chr1 36724555 36724659 -245469005 - MER5A DNA MER1_type -1 188 68 517 335 50 32 chr1 36724686 36724907 -245468757 + MIR SINE MIR 12 236 -26 1649 186 6 37 chr1 36724983 36725179 -245468485 - 7SLRNA srpRNA srpRNA -3 317 133 1941 155 3 0 chr1 36725179 36725482 -245468182 - AluJo SINE Alu -8 304 1 1649 186 6 37 chr1 36725482 36725612 -245468052 - 7SLRNA srpRNA srpRNA -187 133 1 1436 193 50 0 chr1 36726055 36726335 -245467329 + AluJo SINE Alu 1 294 -18 549 236 156 24 chr1 36726390 36726602 -245467062 - MIR SINE MIR -18 244 5 483 212 26 9 chr1 36726646 36726759 -245466905 + L1ME3A LINE L1 6003 6117 -53 596 251 107 23 chr1 36727058 36727273 -245466391 + MIR SINE MIR 30 262 0 372 241 177 34 chr1 36727317 36727481 -245466183 + MIR SINE MIR 3 186 -67 403 289 38 102 chr1 36727926 36728161 -245465503 - MER102b DNA MER1_type -4 337 118 1440 203 36 70 chr1 36728186 36728651 -245465013 + L1MC5 LINE L1 7002 7448 -513 2296 89 10 0 chr1 36728651 36728954 -245464710 + AluY SINE Alu 1 306 -5 1440 203 36 70 chr1 36728954 36729019 -245464645 + L1MC5 LINE L1 7448 7514 -447 1292 170 115 11 chr1 36729023 36729293 -245464371 + AluJo SINE Alu 5 302 0 322 213 103 22 chr1 36729338 36729474 -245464190 + L1MC5 LINE L1 7646 7792 -169 1324 150 0 5 chr1 36729651 36729858 -245463806 - AluJb SINE Alu -20 292 87 206 176 59 39 chr1 36730160 36730211 -245463453 - L2 LINE L2 -14 3299 3248 351 0 0 0 chr1 36730219 36730258 -245463406 + (CA)n Simple_repeat Simple_repeat 2 40 0 243 270 0 32 chr1 36730285 36730348 -245463316 + L2 LINE L2 3194 3254 -59 269 247 55 0 chr1 36730370 36730443 -245463221 - MIR SINE MIR -95 167 91 1538 157 107 11 chr1 36730540 36730820 -245462844 + AluJo SINE Alu 5 311 -1 228 267 133 0 chr1 36731582 36731657 -245462007 + MIR3 SINE MIR 92 176 -32 336 250 0 0 chr1 36731659 36731755 -245461909 + A-rich Low_complexity Low_complexity 1 96 0 566 244 86 69 chr1 36732950 36733239 -245460425 + L1ME LINE L1 5514 5777 -344 2044 109 3 0 chr1 36733325 36733608 -245460056 + AluSq SINE Alu 1 284 -29 2291 73 0 7 chr1 36734019 36734322 -245459342 - AluY SINE Alu -10 301 1 247 296 99 46 chr1 36734385 36734537 -245459127 - MIR SINE MIR -56 206 47 1968 106 13 13 chr1 36734540 36734841 -245458823 + AluSx SINE Alu 1 301 -11 2131 94 3 3 chr1 36735155 36735454 -245458210 - AluSx SINE Alu -13 299 1 1282 215 118 73 chr1 36735468 36736002 -245457662 + LTR36 LTR ERV1 54 611 0 1110 202 9 5 chr1 36736003 36736216 -245457448 + MLT1D LTR MaLR 292 505 0 1978 92 21 21 chr1 36736364 36736675 -245456989 + AluSx SINE Alu 1 311 0 1211 173 71 0 chr1 36736692 36736917 -245456747 + AluJo SINE Alu 6 246 -66 717 183 15 0 chr1 36736918 36737049 -245456615 + FRAM SINE Alu 1 40 0 462 162 27 0 chr1 36737049 36737123 -245456541 + Tigger4(Zombi) DNA MER2_type 95 170 -2561 2770 111 57 5 chr1 36737126 36737567 -245456097 + Tigger4(Zombi) DNA MER2_type 2268 2731 0 2114 109 0 3 chr1 36737735 36738028 -245455636 + AluSx SINE Alu 1 292 -20 2304 99 0 3 chr1 36738030 36738344 -245455320 + AluSq SINE Alu 1 313 0 314 275 119 9 chr1 36738710 36738819 -245454845 - MLT1K LTR MaLR -464 124 4 410 253 0 0 chr1 36738997 36739076 -245454588 - L2 LINE L2 -4 3268 3190 681 143 0 0 chr1 36739092 36739193 -245454471 + FLAM_C SINE Alu 6 103 -40 830 222 30 56 chr1 36739407 36739472 -245454192 + AluJo SINE Alu 120 185 -127 2179 114 112 83 chr1 36739472 36739944 -245453720 + LTR19A LTR ERV1 1 486 0 830 222 30 56 chr1 36739944 36740077 -245453587 + AluJo SINE Alu 185 298 -14 2383 119 0 0 chr1 36740112 36740422 -245453242 + AluSx SINE Alu 1 310 -2 373 255 19 9 chr1 36740580 36740686 -245452978 - L2 LINE L2 -250 3022 2916 2315 117 0 0 chr1 36740697 36740996 -245452668 + AluSx SINE Alu 1 299 -13 232 313 25 0 chr1 36741125 36741205 -245452459 + LTR67 LTR ERVL 115 196 -361 416 274 65 43 chr1 36741664 36741850 -245451814 + MLT1L LTR MaLR 424 613 -2 629 274 30 0 chr1 36741851 36742015 -245451649 + MIR SINE MIR 94 262 0 2325 110 3 0 chr1 36742181 36742480 -245451184 - AluSx SINE Alu -12 300 1 2310 102 10 13 chr1 36742486 36742800 -245450864 - AluSq SINE Alu 0 313 1 208 217 0 0 chr1 36743075 36743121 -245450543 - MIR SINE MIR -216 46 1 283 224 0 0 chr1 36743212 36743270 -245450394 - MLT1I LTR MaLR 0 409 352 766 198 121 6 chr1 36743376 36743533 -245450131 - MER63A DNA MER1_type -35 175 1 322 226 18 122 chr1 36743533 36743697 -245449967 - MLT1I LTR MaLR -204 205 59 206 203 76 51 chr1 36743770 36743849 -245449815 - L2 LINE L2 -1366 1948 1868 196 329 35 0 chr1 36743908 36743993 -245449671 - MIR SINE MIR -2 260 173 1250 131 0 0 chr1 36744013 36744181 -245449483 - AluSc SINE Alu -13 296 129 290 244 11 67 chr1 36744187 36744277 -245449387 - MIR SINE MIR -106 156 72 781 249 64 67 chr1 36744301 36744615 -245449049 + MLT1I LTR MaLR 1 315 -94 2476 100 0 0 chr1 36744615 36744926 -245448738 - AluSx SINE Alu -1 311 1 781 249 64 67 chr1 36744926 36745016 -245448648 + MLT1I LTR MaLR 315 404 -5 329 74 6 6 chr1 36745510 36745567 -245448097 - Alu SINE Alu -258 41 1 2056 155 0 0 chr1 36745573 36745870 -245447794 + AluJb SINE Alu 1 297 -15 1408 209 80 25 chr1 36745870 36746268 -245447396 - MER44D DNA MER2_type -130 475 1 1614 269 35 21 chr1 36746270 36746756 -245446908 - MLT1J LTR MaLR -7 504 12 21 36 0 0 chr1 36747034 36747062 -245446602 + GC_rich Low_complexity Low_complexity 1 28 0 2894 91 23 80 chr1 36747113 36748153 -245445511 + SVA Other Other 393 868 -520 21 57 0 0 chr1 36748207 36748242 -245445422 + GC_rich Low_complexity Low_complexity 1 35 0 7151 65 3 41 chr1 36748268 36749260 -245444404 + SVA Other Other 433 1386 0 2179 119 3 0 chr1 36749551 36749846 -245443818 + AluSc SINE Alu 14 309 0 1982 148 0 17 chr1 36749849 36750147 -245443517 + AluSg SINE Alu 1 293 -17 464 274 37 44 chr1 36750147 36750282 -245443382 + L2 LINE L2 3137 3270 -2 592 156 230 37 chr1 36750383 36750518 -245443146 - AluJb SINE Alu -18 294 134 2405 100 7 0 chr1 36750518 36750827 -245442837 - AluSx SINE Alu -1 311 1 556 218 30 8 chr1 36751639 36751772 -245441892 - MLT1G LTR MaLR 0 590 455 795 241 6 0 chr1 36751775 36751937 -245441727 + MLT1F LTR MaLR 4 166 -376 815 127 0 108 chr1 36751938 36752096 -245441568 + AluJo SINE Alu 1 141 -171 1145 168 15 10 chr1 36752098 36752301 -245441363 + AluJo SINE Alu 98 301 -11 1638 185 92 14 chr1 36752301 36752658 -245441006 + MLT1F LTR MaLR 158 542 0 980 224 151 51 chr1 36752658 36753019 -245440645 - MLT1G LTR MaLR -131 459 9 2711 41 0 13 chr1 36753232 36753547 -245440117 - AluY SINE Alu 0 311 1 2258 111 0 10 chr1 36753547 36753845 -245439819 - AluSx SINE Alu -17 295 1 287 283 54 11 chr1 36754013 36754105 -245439559 - MIR SINE MIR -146 116 21 307 344 10 0 chr1 36754614 36754710 -245438954 - L2 LINE L2 -30 3242 3146 1242 211 11 58 chr1 36754811 36755102 -245438562 + L1ME2 LINE L1 5804 6076 -88 2212 106 3 14 chr1 36755102 36755395 -245438269 + AluSg SINE Alu 1 290 -20 1242 211 11 58 chr1 36755395 36755464 -245438200 + L1ME2 LINE L1 6076 6147 -17 2155 119 20 7 chr1 36755499 36755793 -245437871 + AluSx SINE Alu 4 301 -11 1743 205 128 51 chr1 36755793 36755930 -245437734 + MLT1F LTR MaLR 13 138 -404 2262 114 0 7 chr1 36755930 36756227 -245437437 + AluSq SINE Alu 1 295 -18 1743 205 128 51 chr1 36756227 36756581 -245437083 + MLT1F LTR MaLR 138 542 0 2947 108 5 0 chr1 36756905 36757331 -245436333 + MSTC LTR MaLR 1 428 0 590 300 27 8 chr1 36757337 36757570 -245436094 - MIR SINE MIR 0 262 30 1469 96 0 25 chr1 36757958 36758157 -245435507 + AluSg SINE Alu 1 194 -116 535 261 51 13 chr1 36758175 36758332 -245435332 + MLT1K LTR MaLR 16 178 -410 382 167 0 0 chr1 36758418 36758478 -245435186 + AluSg/q SINE Alu 191 250 -53 1300 147 0 45 chr1 36758478 36758702 -245434962 + AluSg/x SINE Alu 85 298 -14 907 235 50 87 chr1 36758926 36759283 -245434381 - L2 LINE L2 0 3313 2970 6363 127 21 21 chr1 36759286 36760255 -245433409 + LTR5 LTR ERVK 1 969 0 4213 102 29 2 chr1 36760255 36760881 -245432783 + HERVK LTR ERVK 1 643 -6600 3001 77 36 18 chr1 36760896 36762042 -245431622 + HERVK11 LTR ERVK 206 2710 -5243 * 7748 49 2 0 chr1 36762024 36762995 -245430669 + HERVK11 LTR ERVK 2912 3884 -4069 900 108 7 0 chr1 36762969 36763108 -245430556 + HERVK11 LTR ERVK 4462 4601 -3352 * 7731 64 6 1 chr1 36763106 36764144 -245429520 + HERVK11 LTR ERVK 5525 6620 -1333 1506 145 23 87 chr1 36764153 36764463 -245429201 + LTR5 LTR ERVK 680 969 0 488 120 98 198 chr1 36764480 36764737 -245428927 + L1MC4 LINE L1 7827 7995 0 1988 148 30 3 chr1 36764748 36765046 -245428618 + AluSx SINE Alu 1 306 -6 22 0 0 0 chr1 36765048 36765070 -245428594 + AT_rich Low_complexity Low_complexity 1 22 0 271 259 0 0 chr1 36765070 36765128 -245428536 - L2 LINE L2 -342 2971 2914 1584 174 0 8 chr1 36765145 36765404 -245428260 + AluJb SINE Alu 51 307 -5 604 258 267 19 chr1 36765522 36765952 -245427712 + MLT1K LTR MaLR 16 552 -36 300 321 38 34 chr1 36765994 36766153 -245427511 - L2 LINE L2 -218 3054 2892 1583 180 33 23 chr1 36766153 36766459 -245427205 + AluJo SINE Alu 2 310 -2 300 321 38 34 chr1 36766459 36766536 -245427128 - L2 LINE L2 -380 2892 2817 799 105 6 39 chr1 36766536 36766717 -245426947 + (GAA)n Simple_repeat Simple_repeat 3 177 0 604 270 58 58 chr1 36766769 36767062 -245426602 - L2 LINE L2 -457 2857 2565 479 276 46 50 chr1 36767084 36767453 -245426211 + MLT1H LTR MaLR 1 410 -132 1310 195 152 40 chr1 36767453 36767573 -245426091 - MLT1A1 LTR MaLR 0 365 260 1927 136 25 0 chr1 36767573 36767729 -245425935 - AluJb SINE Alu -19 293 125 207 0 0 0 chr1 36767729 36767752 -245425912 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1927 136 25 0 chr1 36767752 36767881 -245425783 - AluJb SINE Alu -187 125 1 1310 195 152 40 chr1 36767881 36768088 -245425576 - MLT1A1 LTR MaLR -105 260 1 673 274 10 10 chr1 36768088 36768289 -245425375 - MIR SINE MIR -60 202 2 1667 129 7 44 chr1 36768910 36769181 -245424483 + AluSx SINE Alu 34 294 -18 574 324 34 5 chr1 36769196 36769403 -245424261 - MIR SINE MIR -31 231 19 249 105 0 0 chr1 36769427 36769465 -245424199 - L1MA1 LINE L1 -4 6298 6261 986 154 10 62 chr1 36769630 36769705 -245423959 + MER5A DNA MER1_type 2 79 -110 2497 93 0 3 chr1 36769705 36770016 -245423648 + AluSq SINE Alu 1 310 -3 986 154 10 62 chr1 36770016 36770135 -245423529 + MER5A DNA MER1_type 79 186 -3 690 201 30 0 chr1 36770679 36770813 -245422851 + MIR SINE MIR 47 184 -78 438 213 66 33 chr1 36770838 36770960 -245422704 + MIR SINE MIR 68 193 -69 2295 116 10 10 chr1 36770961 36771272 -245422392 - AluSx SINE Alu -1 311 1 2204 90 52 0 chr1 36771286 36771576 -245422088 - AluSx SINE Alu -7 305 1 624 304 72 10 chr1 36771970 36772177 -245421487 + MIR SINE MIR 37 256 -6 1542 182 128 3 chr1 36772232 36772584 -245421080 - MSTD LTR MaLR 0 396 1 2178 130 0 3 chr1 36772599 36772899 -245420765 - AluSx SINE Alu -11 301 3 356 273 58 58 chr1 36772936 36773108 -245420556 + MLT1J LTR MaLR 12 183 -328 1981 172 36 45 chr1 36773114 36773584 -245420080 + MLT1C LTR MaLR 1 466 -1 537 294 73 0 chr1 36773939 36774116 -245419548 + MIR SINE MIR 2 191 -71 200 273 146 27 chr1 36774259 36774369 -245419295 - L2 LINE L2 0 3272 3150 2292 66 42 10 chr1 36774430 36774718 -245418946 - AluY SINE Alu -14 297 1 212 241 56 128 chr1 36774883 36775078 -245418586 - MIR3 SINE MIR -4 204 24 2128 152 0 0 chr1 36775186 36775489 -245418175 + AluJb SINE Alu 3 305 -7 2144 96 4 0 chr1 36775675 36775945 -245417719 + AluSq SINE Alu 1 271 -42 247 225 79 34 chr1 36776313 36776402 -245417262 - L2 LINE L2 -214 3058 2966 267 221 180 0 chr1 36777427 36777549 -245416115 - MIR3 SINE MIR -36 172 29 236 286 165 0 chr1 36777668 36777759 -245415905 - MIR3 SINE MIR -3 205 100 187 331 153 6 chr1 36778274 36778431 -245415233 + L2 LINE L2 2356 2535 -779 209 339 165 15 chr1 36778716 36779043 -245414621 + L2 LINE L2 2933 3308 -5 2154 114 0 10 chr1 36780366 36780664 -245413000 - AluSx SINE Alu -11 301 7 226 225 70 42 chr1 36780698 36780769 -245412895 - L2 LINE L2 -6 3307 3235 1201 262 65 16 chr1 36780880 36781266 -245412398 - L2 LINE L2 0 3313 2909 340 307 0 0 chr1 36781895 36781996 -245411668 - MIR SINE MIR -14 248 148 267 314 88 46 chr1 36782533 36782772 -245410892 + L2 LINE L2 1685 1933 -1381 2540 70 3 0 chr1 36782905 36783203 -245410461 - AluSp SINE Alu -14 299 1 2264 107 0 3 chr1 36783216 36783506 -245410158 - AluSg SINE Alu -21 289 1 438 302 197 47 chr1 36783776 36784822 -245408842 + L2 LINE L2 2090 3300 -13 565 276 191 5 chr1 36784848 36785058 -245408606 + MIR SINE MIR 2 250 -12 21 0 0 0 chr1 36785065 36785086 -245408578 + AT_rich Low_complexity Low_complexity 1 21 0 895 153 0 15 chr1 36785086 36785223 -245408441 + AluJo SINE Alu 1 135 -177 365 319 121 0 chr1 36785404 36785561 -245408103 + MIR SINE MIR 31 206 -56 373 272 149 56 chr1 36785689 36785835 -245407829 + MIR SINE MIR 36 206 -56 1020 214 37 0 chr1 36785835 36786050 -245407614 + MER58A DNA MER1_type 2 224 0 373 272 149 56 chr1 36786050 36786098 -245407566 + MIR SINE MIR 206 248 -14 4218 103 27 31 chr1 36786340 36787017 -245406647 - L1MA8 LINE L1 0 6291 5616 2089 138 0 0 chr1 36787017 36787306 -245406358 - AluSx SINE Alu -19 293 5 4218 103 27 31 chr1 36787306 36787377 -245406287 - L1MA8 LINE L1 -675 5616 5546 496 209 17 191 chr1 36787407 36787637 -245406027 - MER91B DNA MER1_type 0 190 1 211 191 0 56 chr1 36788018 36788107 -245405557 + (GGCTG)n Simple_repeat Simple_repeat 2 85 0 255 316 160 11 chr1 36788333 36788520 -245405144 - L2 LINE L2 -218 3054 2840 2060 156 6 13 chr1 36789489 36789803 -245403861 - AluJo SINE Alu 0 312 1 374 278 150 9 chr1 36789884 36790078 -245403586 - MIR SINE MIR -12 250 34 277 377 0 0 chr1 36790103 36790217 -245403447 + MIR SINE MIR 32 145 -63 228 246 0 72 chr1 36790625 36790694 -245402970 - MIR SINE MIR -110 152 89 321 226 157 25 chr1 36791197 36791401 -245402263 + L1ME4a LINE L1 5870 6100 -21 2885 121 2 46 chr1 36791401 36791616 -245402048 - Tigger2a DNA MER2_type -2274 434 248 2264 116 0 0 chr1 36791616 36791908 -245401756 - AluSx SINE Alu -20 292 1 2885 121 2 46 chr1 36791908 36792146 -245401518 - Tigger2a DNA MER2_type -2460 248 1 436 244 92 43 chr1 36792861 36793025 -245400639 - MIR SINE MIR -83 179 8 435 262 19 9 chr1 36793077 36793184 -245400480 - MIR SINE MIR -119 143 36 310 330 0 11 chr1 36793460 36793551 -245400113 + MIR SINE MIR 38 127 -81 270 216 167 10 chr1 36794145 36794247 -245399417 - L1ME4a LINE L1 -188 5933 5816 2156 126 0 3 chr1 36794541 36794835 -245398829 - AluSx SINE Alu -19 293 1 2259 129 3 0 chr1 36795810 36796121 -245397543 + AluSx SINE Alu 1 312 0 225 0 0 0 chr1 36796335 36796360 -245397304 + (TG)n Simple_repeat Simple_repeat 1 25 0 361 210 46 154 chr1 36796427 36796640 -245397024 - L1MC5 LINE L1 -227 7734 7500 2251 113 0 0 chr1 36796640 36796931 -245396733 - AluSx SINE Alu -20 292 2 361 210 46 154 chr1 36796931 36796976 -245396688 - L1MC5 LINE L1 -461 7500 7452 747 211 0 0 chr1 36796976 36797109 -245396555 - FLAM_C SINE Alu 0 133 1 361 210 46 154 chr1 36797109 36797310 -245396354 - L1MC5 LINE L1 -509 7452 7324 1255 281 90 7 chr1 36797519 36798059 -245395605 - L1ME2 LINE L1 -210 5952 5369 2380 275 105 19 chr1 36798101 36799527 -245394137 + L2 LINE L2 1756 3309 -4 217 291 173 27 chr1 36799545 36799655 -245394009 + L2 LINE L2 3143 3268 -4 2314 108 0 0 chr1 36799656 36799953 -245393711 - AluSx SINE Alu -15 297 1 378 247 80 67 chr1 36800301 36800451 -245393213 - L1ME4a LINE L1 -3 6118 5967 204 40 0 0 chr1 36800463 36800488 -245393176 + (TTTTA)n Simple_repeat Simple_repeat 3 27 0 1416 181 68 19 chr1 36800491 36800757 -245392907 - AluJb SINE Alu -33 279 1 2041 131 64 22 chr1 36801154 36801514 -245392150 - THE1C LTR MaLR 0 375 1 8520 149 54 24 chr1 36801797 36802775 -245390889 + L1 LINE L1 3242 4190 -1956 1979 143 11 0 chr1 36802775 36803055 -245390609 + AluSx SINE Alu 1 283 -29 8520 149 54 24 chr1 36803055 36803069 -245390595 + L1 LINE L1 4190 4202 -1944 2182 129 7 0 chr1 36803069 36803379 -245390285 + AluSx SINE Alu 1 312 0 8520 149 54 24 chr1 36803379 36804103 -245389561 + L1 LINE L1 4202 5009 -1137 2279 115 0 0 chr1 36804113 36804409 -245389255 - AluSx SINE Alu -12 300 5 3804 124 44 15 chr1 36804409 36805087 -245388577 - L1MC1 LINE L1 -440 5893 5186 2274 116 0 13 chr1 36805087 36805397 -245388267 - AluSx SINE Alu -4 308 3 3804 124 44 15 chr1 36805397 36805486 -245388178 - L1MC1 LINE L1 -1147 5186 5101 586 260 68 7 chr1 36805499 36805645 -245388019 + L2 LINE L2 3112 3266 -47 1260 253 142 52 chr1 36805757 36806547 -245387117 + L1MEd LINE L1 285 1145 -4974 253 167 10 128 chr1 36806551 36806653 -245387011 - LTR50 LTR ERVL -17 771 667 432 305 17 0 chr1 36806924 36807042 -245386622 + MIR3 SINE MIR 68 187 -21 2234 92 20 10 chr1 36807378 36807673 -245385991 - AluSg SINE Alu -12 298 1 759 289 89 22 chr1 36807720 36808193 -245385471 + L1ME3A LINE L1 5290 5809 -353 435 312 50 55 chr1 36808321 36808523 -245385141 + L1ME3A LINE L1 5962 6162 -8 1890 131 34 17 chr1 36808741 36809038 -245384626 - AluY SINE Alu -9 302 1 338 306 49 21 chr1 36809222 36809366 -245384298 - L1M4 LINE L1 -1900 4246 4099 567 227 0 93 chr1 36809367 36809517 -245384147 + MIR3 SINE MIR 21 156 -52 1558 118 14 9 chr1 36809887 36810107 -245383557 - AluSg/x SINE Alu -7 303 83 2712 55 0 0 chr1 36810112 36810423 -245383241 - AluY SINE Alu 0 311 1 2215 93 48 0 chr1 36810423 36810713 -245382951 - AluSq SINE Alu -9 304 1 352 166 74 58 chr1 36810883 36810986 -245382678 + MIR SINE MIR 71 172 -63 2139 122 7 0 chr1 36811193 36811481 -245382183 + AluSx SINE Alu 1 290 -22 668 193 0 36 chr1 36811850 36811990 -245381674 + L2 LINE L2 3179 3313 0 541 308 139 51 chr1 36812301 36812710 -245380954 - L2 LINE L2 0 3272 2828 266 245 118 10 chr1 36812867 36812969 -245380695 + MIR SINE MIR 68 180 -82 1094 217 10 5 chr1 36813294 36813501 -245380163 - MIR SINE MIR -25 237 30 384 283 143 26 chr1 36814264 36814494 -245379170 - L2 LINE L2 -457 2857 2601 227 333 0 67 chr1 36814474 36814609 -245379055 + MIR SINE MIR 80 205 -57 * 206 250 104 0 chr1 36814708 36814756 -245378908 - MIR SINE MIR -145 117 65 188 268 167 25 chr1 36814848 36815046 -245378618 - L2 LINE L2 -243 3029 2804 219 276 40 0 chr1 36815088 36815164 -245378500 - L2 LINE L2 -601 2713 2635 659 291 62 26 chr1 36815390 36815617 -245378047 + MIR SINE MIR 22 256 -6 912 148 153 60 chr1 36817001 36817054 -245376610 - L1MB7 LINE L1 -20 6164 6117 2186 98 6 50 chr1 36817054 36817371 -245376293 + AluSx SINE Alu 3 305 -7 912 148 153 60 chr1 36817371 36817533 -245376131 - L1MB7 LINE L1 -67 6117 5929 1069 245 249 31 chr1 36818644 36819219 -245374445 + L2 LINE L2 2631 3313 0 398 221 14 107 chr1 36819252 36819353 -245374311 + MIR SINE MIR 103 189 -73 2263 118 0 13 chr1 36819353 36819487 -245374177 + AluSg SINE Alu 1 135 -175 2140 127 7 3 chr1 36819487 36819787 -245373877 + AluSg SINE Alu 1 301 -9 2263 118 0 13 chr1 36819787 36819965 -245373699 + AluSg SINE Alu 135 309 -1 398 221 14 107 chr1 36819965 36820003 -245373661 + MIR SINE MIR 189 229 -33 4425 44 0 0 chr1 36820294 36820817 -245372847 - L1PA5 LINE L1 -3 6151 5629 302 258 296 25 chr1 36821090 36821368 -245372296 + L2 LINE L2 2720 3073 -240 252 0 0 0 chr1 36821504 36821532 -245372132 + (TTTCC)n Simple_repeat Simple_repeat 5 32 0 763 215 163 52 chr1 36821556 36821650 -245372014 + L2 LINE L2 2973 3055 -258 878 148 0 15 chr1 36821650 36821785 -245371879 + FLAM_C SINE Alu 1 133 0 763 215 163 52 chr1 36821785 36821997 -245371667 + L2 LINE L2 3055 3313 0 233 337 82 10 chr1 36822181 36822279 -245371385 + L2 LINE L2 3204 3308 -5 1006 161 21 5 chr1 36822534 36822720 -245370944 - MER53 DNA DNA 0 189 1 184 233 164 14 chr1 36823587 36823660 -245370004 - MIR SINE MIR -3 259 176 746 234 62 70 chr1 36823677 36823852 -245369812 + MIR SINE MIR 18 192 -70 1820 145 0 42 chr1 36823852 36824162 -245369502 + AluJb SINE Alu 1 297 -15 746 234 62 70 chr1 36824162 36824230 -245369434 + MIR SINE MIR 192 259 -3 227 292 100 39 chr1 36824234 36824364 -245369300 - MIR3 SINE MIR -68 140 3 260 229 14 43 chr1 36824584 36824654 -245369010 - L2 LINE L2 -943 2371 2304 205 297 0 99 chr1 36824774 36824865 -245368799 - L2 LINE L2 -258 3014 2933 2951 147 24 19 chr1 36824959 36825531 -245368133 + LTR51 LTR ERV1 2 671 0 2239 116 3 0 chr1 36825628 36825929 -245367735 - AluSq SINE Alu -11 302 1 1757 216 58 73 chr1 36825974 36826524 -245367140 + MLT1F1 LTR MaLR 1 567 0 197 369 64 21 chr1 36826533 36826769 -245366895 - L2 LINE L2 -655 2659 2414 349 252 151 17 chr1 36827008 36827127 -245366537 - L2 LINE L2 -3 3310 3176 774 192 19 83 chr1 36827179 36827445 -245366219 + MER33 DNA MER1_type 1 249 -75 263 194 0 69 chr1 36827511 36827583 -245366081 + MER33 DNA MER1_type 258 324 0 513 287 122 51 chr1 36827992 36828028 -245365636 + L2 LINE L2 2895 2927 -345 892 205 102 19 chr1 36828028 36828233 -245365431 - MER58A DNA MER1_type -1 223 2 513 287 122 51 chr1 36828233 36828548 -245365116 + L2 LINE L2 2927 3271 -1 226 359 152 0 chr1 36829695 36829840 -245363824 - MIR SINE MIR -48 214 48 200 250 0 18 chr1 36829924 36829980 -245363684 + L2 LINE L2 3207 3261 -11 * 595 232 40 28 chr1 36829977 36830154 -245363510 - MIR SINE MIR -43 219 41 277 289 289 18 chr1 36830268 36830434 -245363230 + L3 LINE CR1 1259 1469 -108 2022 89 21 18 chr1 36830777 36831090 -245362574 + AluSx SINE Alu 3 316 0 262 264 189 40 chr1 36831357 36831558 -245362106 + L2 LINE L2 2898 3128 -144 827 177 21 0 chr1 36831884 36832121 -245361543 + CT-rich Low_complexity Low_complexity 1 242 0 2038 141 13 3 chr1 36832135 36832440 -245361224 - AluSx SINE Alu -4 308 1 2421 92 3 0 chr1 36832488 36832791 -245360873 + AluSg SINE Alu 1 304 -6 425 243 96 8 chr1 36832828 36832991 -245360673 + MIR3 SINE MIR 31 198 -40 599 209 108 13 chr1 36832991 36833149 -245360515 + MIR SINE MIR 20 192 -70 334 304 18 27 chr1 36833287 36833399 -245360265 - MIR3 SINE MIR -14 194 84 471 133 67 153 chr1 36834133 36834152 -245359512 + L1ME4a LINE L1 5960 5979 -142 1122 164 198 57 chr1 36834152 36834415 -245359249 + AluJo SINE Alu 3 302 0 471 133 67 153 chr1 36834415 36834545 -245359119 + L1ME4a LINE L1 5979 6096 -25 204 212 98 98 chr1 36835225 36835357 -245358307 - L2 LINE L2 -209 3063 2932 282 293 47 47 chr1 36835915 36836065 -245357599 - MIR3 SINE MIR -29 179 30 253 236 181 24 chr1 36836729 36836856 -245356808 + MIR3 SINE MIR 21 167 -41 398 250 213 0 chr1 36837142 36837278 -245356386 + MIR3 SINE MIR 31 195 -13 783 77 10 0 chr1 36837519 36837623 -245356041 + L1PA10 LINE L1 6061 6165 -3 312 281 22 82 chr1 36838227 36838362 -245355302 - MIR3 SINE MIR 0 208 82 251 301 63 28 chr1 36838548 36838715 -245354949 + MIR SINE MIR 5 192 -70 3010 176 39 7 chr1 36839588 36839903 -245353761 + LTR64 LTR ERVK 1 342 -216 2354 65 10 7 chr1 36839903 36840196 -245353468 - AluSp SINE Alu -17 296 3 3010 176 39 7 chr1 36840196 36840421 -245353243 + LTR64 LTR ERVK 342 558 0 440 304 62 6 chr1 36840692 36840853 -245352811 - MIR SINE MIR -80 182 13 378 294 31 55 chr1 36840960 36841123 -245352541 + MIR SINE MIR 68 226 -36 438 359 145 15 chr1 36841633 36842026 -245351638 + LTR67 LTR ERVL 114 557 0 342 319 140 0 chr1 36842733 36842890 -245350774 - MIR3 SINE MIR -7 201 23 365 170 140 20 chr1 36843589 36843689 -245349975 + MIR3 SINE MIR 70 181 -27 250 256 163 0 chr1 36843702 36843788 -245349876 + L2 LINE L2 3168 3267 -5 217 224 0 0 chr1 36843801 36843850 -245349814 - MIR3 SINE MIR -6 202 154 1775 214 121 65 chr1 36843853 36844571 -245349093 + MER20B DNA MER1_type 23 780 -3 495 288 33 0 chr1 36844576 36844729 -245348935 - MIR3 SINE MIR -49 159 2 2043 133 0 3 chr1 36844906 36845208 -245348456 - AluSx SINE Alu -5 307 7 1797 167 0 0 chr1 36845234 36845515 -245348149 - AluJo SINE Alu -31 281 1 284 306 20 61 chr1 36845537 36845684 -245347980 + L2 LINE L2 3099 3239 -33 272 229 56 108 chr1 36847808 36848001 -245345663 - MIR SINE MIR -50 212 20 2378 84 0 3 chr1 36848044 36848354 -245345310 + AluSp SINE Alu 1 309 -4 481 284 91 25 chr1 36848386 36848583 -245345081 - MIR SINE MIR 0 262 53 1225 181 9 18 chr1 36849150 36849371 -245344293 + MER20 DNA MER1_type 1 219 0 287 265 57 11 chr1 36849421 36849509 -245344155 - MIR SINE MIR -55 153 76 211 286 18 0 chr1 36849507 36849563 -245344101 - L2 LINE L2 -1 3312 3256 * 558 303 152 24 chr1 36849621 36849918 -245343746 - L2 LINE L2 -49 3223 2889 382 131 0 0 chr1 36849921 36849992 -245343672 + Alu SINE Alu 1 53 -248 2262 86 0 0 chr1 36850278 36850570 -245343094 + AluSg SINE Alu 1 292 -18 2215 62 0 0 chr1 36850572 36850848 -245342816 + AluY SINE Alu 1 276 -35 1894 149 10 0 chr1 36850950 36851246 -245342418 + AluJo SINE Alu 8 306 -6 302 299 43 78 chr1 36851515 36851746 -245341918 + L1M4 LINE L1 3125 3347 -2799 1845 131 21 0 chr1 36852699 36852982 -245340682 - AluSx SINE Alu -9 303 15 226 231 77 0 chr1 36853645 36853710 -245339954 + MIR SINE MIR 39 108 -100 321 346 27 32 chr1 36853728 36853913 -245339751 + MER5A DNA MER1_type 3 186 -3 414 255 48 48 chr1 36853743 36853888 -245339776 - MER5B DNA MER1_type -3 175 31 620 317 54 73 chr1 36853908 36854280 -245339384 - L3 LINE CR1 -44 1533 1169 1591 173 38 3 chr1 36854456 36854745 -245338919 + AluJo SINE Alu 1 299 -13 2092 123 10 0 chr1 36854777 36855078 -245338586 + AluSg SINE Alu 1 304 -6 2142 109 0 0 chr1 36855330 36855624 -245338040 + AluY SINE Alu 1 294 -17 180 0 0 0 chr1 36855627 36855647 -245338017 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 274 299 150 17 chr1 36856071 36856272 -245337392 - MIR SINE MIR -13 249 16 2423 65 0 3 chr1 36856373 36856683 -245336981 + AluY SINE Alu 1 309 -2 1786 86 0 0 chr1 36856691 36856925 -245336739 + AluY SINE Alu 2 235 -76 1093 117 6 0 chr1 36856927 36857089 -245336575 + AluSg/x SINE Alu 146 308 -4 1371 142 73 4 chr1 36857089 36857349 -245336315 + L1MB7 LINE L1 5795 6072 -112 5718 175 41 10 chr1 36857349 36858387 -245335277 - HERVS71 LTR ERV1 -6507 2471 1401 737 219 107 0 chr1 36858768 36858937 -245334727 - HERVS71 LTR ERV1 -7929 1049 863 1880 93 4 0 chr1 36859047 36859294 -245334370 - AluSx SINE Alu -64 248 1 511 254 35 30 chr1 36859468 36859637 -245334027 + MIR SINE MIR 2 171 -91 3942 249 125 37 chr1 36859768 36861567 -245332097 + L2 LINE L2 1275 3270 -43 355 291 0 71 chr1 36861619 36861671 -245331993 + MIR SINE MIR 117 171 -91 2350 98 0 0 chr1 36861671 36861977 -245331687 - AluSg SINE Alu -4 306 1 355 291 0 71 chr1 36861977 36862065 -245331599 + MIR SINE MIR 171 247 -15 413 314 43 0 chr1 36862455 36862595 -245331069 + MIR SINE MIR 105 250 -12 381 276 60 76 chr1 36862660 36862752 -245330912 + MIR SINE MIR 32 121 -141 2428 80 0 13 chr1 36862752 36863066 -245330598 - AluSq SINE Alu -2 311 2 381 276 60 76 chr1 36863066 36863158 -245330506 + MIR SINE MIR 121 213 -49 27 29 0 0 chr1 36863186 36863220 -245330444 + AT_rich Low_complexity Low_complexity 1 34 0 186 139 0 93 chr1 36863465 36863508 -245330156 + L2 LINE L2 3233 3271 -1 262 365 91 15 chr1 36864052 36864249 -245329415 - L2 LINE L2 -683 2631 2420 2163 115 0 6 chr1 36864313 36864627 -245329037 - AluSq SINE Alu -1 312 1 425 309 71 0 chr1 36864888 36865056 -245328608 + MIR SINE MIR 13 192 -70 206 291 111 0 chr1 36865134 36865251 -245328413 - L2 LINE L2 -223 3049 2920 314 365 19 0 chr1 36865885 36866041 -245327623 + L2 LINE L2 2226 2384 -930 453 361 64 19 chr1 36866041 36866510 -245327154 + L2 LINE L2 2685 3270 -2 485 263 36 7 chr1 36866780 36866917 -245326747 + MIR SINE MIR 24 164 -98 2377 93 0 0 chr1 36866949 36867261 -245326403 - AluSq SINE Alu -1 312 1 192 277 21 0 chr1 36867288 36867335 -245326329 - L2 LINE L2 -20 3252 3205 199 295 16 16 chr1 36868140 36868201 -245325463 - MIR SINE MIR -105 103 43 356 253 74 11 chr1 36868390 36868485 -245325179 - MIR SINE MIR -62 146 46 231 36 0 0 chr1 36868505 36868533 -245325131 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 243 0 0 0 chr1 36868689 36868716 -245324948 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 1558 161 0 42 chr1 36868716 36869002 -245324662 - AluJo SINE Alu -27 285 12 215 261 22 43 chr1 36869615 36869707 -245323957 + L2 LINE L2 2490 2579 -735 3501 117 33 23 chr1 36869810 36870332 -245323332 + MER1A DNA MER1_type 1 527 0 808 264 25 17 chr1 36870378 36870613 -245323051 - MIR SINE MIR -8 254 18 1106 158 26 18 chr1 36870663 36870891 -245322773 + MER96B DNA MER1_type? 133 362 -55 813 301 81 13 chr1 36870897 36871293 -245322371 + L2 LINE L2 2835 3257 -56 192 262 82 0 chr1 36871653 36871714 -245321950 - MIR3 SINE MIR -19 189 124 801 222 169 30 chr1 36871788 36872090 -245321574 - L2 LINE L2 -2 3311 2968 470 216 22 86 chr1 36872123 36872262 -245321402 + MLT1J LTR MaLR 262 391 -120 581 241 7 22 chr1 36872333 36872470 -245321194 + MER63A DNA MER1_type 72 206 -4 229 279 36 36 chr1 36872472 36872583 -245321081 + MLT1J LTR MaLR 394 504 -7 363 306 136 59 chr1 36873139 36873580 -245320084 + L2 LINE L2 2373 2847 -467 974 191 106 0 chr1 36873590 36873778 -245319886 - MER3 DNA MER1_type -1 208 1 193 250 0 0 chr1 36873819 36873863 -245319801 + L2 LINE L2 2998 3041 -231 1810 123 31 24 chr1 36873963 36874256 -245319408 + AluSx SINE Alu 1 295 -17 309 172 0 0 chr1 36874273 36874331 -245319333 + Alu SINE Alu 245 302 0 246 167 24 0 chr1 36874331 36874373 -245319291 + L2 LINE L2 3141 3183 -89 602 228 66 56 chr1 36874659 36874856 -245318808 + MIR SINE MIR 44 242 -20 353 307 22 0 chr1 36874955 36875092 -245318572 - MIR3 SINE MIR -15 193 54 646 257 59 21 chr1 36875236 36875423 -245318241 - MIR SINE MIR -56 206 13 191 310 17 0 chr1 36875446 36875504 -245318160 - L2 LINE L2 -4 3309 3251 316 238 81 113 chr1 36875657 36875695 -245317969 + MIR SINE MIR 108 146 -116 2119 127 0 0 chr1 36875695 36876002 -245317662 - AluSx SINE Alu -5 307 1 316 238 81 113 chr1 36876002 36876123 -245317541 + MIR SINE MIR 146 262 0 205 333 25 25 chr1 36876834 36876915 -245316749 + MIR SINE MIR 164 244 -18 315 213 0 0 chr1 36877307 36877382 -245316282 + (TG)n Simple_repeat Simple_repeat 1 75 0 185 311 0 49 chr1 36877527 36877588 -245316076 + MIR SINE MIR 40 97 -165 1577 151 12 72 chr1 36877592 36877924 -245315740 - AluJo SINE Alu 0 312 1 415 178 33 0 chr1 36877939 36878029 -245315635 - L1MB4 LINE L1 -2 6178 6086 1889 162 0 19 chr1 36878089 36878403 -245315261 - AluJb SINE Alu -4 308 1 387 215 51 0 chr1 36878411 36878490 -245315174 + MIR SINE MIR 110 192 -70 228 246 0 0 chr1 36878805 36878862 -245314802 - L1MC4 LINE L1 -1334 6708 6652 225 234 0 43 chr1 36878868 36878962 -245314702 - L1MC4 LINE L1 -1339 6703 6614 207 0 0 0 chr1 36878962 36878985 -245314679 + (TATATG)n Simple_repeat Simple_repeat 5 27 0 1831 106 31 38 chr1 36878985 36879277 -245314387 - AluSx SINE Alu -22 290 1 275 217 0 33 chr1 36879445 36879505 -245314159 + MIR3 SINE MIR 122 179 -29 583 277 71 34 chr1 36879523 36879761 -245313903 + MIR SINE MIR 1 247 -15 810 252 52 5 chr1 36880657 36880867 -245312797 + MIR SINE MIR 37 256 -6 543 221 0 0 chr1 36880960 36881087 -245312577 + (CA)n Simple_repeat Simple_repeat 2 128 0 387 287 66 30 chr1 36881225 36881392 -245312272 - MIR SINE MIR -10 252 80 279 306 0 0 chr1 36881435 36881520 -245312144 - L2 LINE L2 -203 3069 2985 1022 185 25 30 chr1 36881526 36881726 -245311938 + MER20 DNA MER1_type 7 205 -14 523 302 167 0 chr1 36881742 36881957 -245311707 - MIR SINE MIR -4 258 8 241 248 137 46 chr1 36882012 36882165 -245311499 + MIR3 SINE MIR 35 201 -7 491 266 38 43 chr1 36882916 36883100 -245310564 + MIR3 SINE MIR 21 203 -5 394 221 13 0 chr1 36883390 36883467 -245310197 - L3 LINE CR1 -97 1480 1403 247 364 18 0 chr1 36883547 36883657 -245310007 - L2 LINE L2 -1 3271 3160 479 276 0 32 chr1 36883730 36883886 -245309778 + MER103 DNA DNA 3 153 -13 216 0 0 0 chr1 36883922 36883946 -245309718 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 247 240 67 0 chr1 36883952 36884027 -245309637 - L2 LINE L2 -214 3058 2979 294 206 22 98 chr1 36884751 36884935 -245308729 + (CCCCG)n Simple_repeat Simple_repeat 5 174 0 279 0 0 0 chr1 36886529 36886560 -245307104 + (TG)n Simple_repeat Simple_repeat 2 32 0 234 313 0 23 chr1 36886626 36886757 -245306907 - L2 LINE L2 -290 2982 2855 426 305 35 40 chr1 36887317 36887491 -245306173 + MLT1L LTR MaLR 1 173 -442 335 243 14 0 chr1 36887484 36887558 -245306106 + MLT1L LTR MaLR 124 198 -417 * 264 223 286 55 chr1 36887649 36887887 -245305777 + MLT1L LTR MaLR 296 615 0 191 273 182 16 chr1 36888005 36888126 -245305538 - L2 LINE L2 -1 3312 3172 289 297 30 10 chr1 36888151 36888252 -245305412 - MIR SINE MIR -48 214 112 487 317 164 26 chr1 36888261 36888683 -245304981 + MLT1J2 LTR MaLR 1 495 -16 2111 126 0 0 chr1 36888705 36889007 -245304657 - AluSx SINE Alu -10 302 1 2213 107 0 0 chr1 36889149 36889448 -245304216 - AluSx SINE Alu -13 299 1 2944 194 14 36 chr1 36889945 36890451 -245303213 - MER82 DNA MER2_type -1 652 158 2014 117 7 3 chr1 36890451 36890753 -245302911 + AluSq SINE Alu 1 303 0 2944 194 14 36 chr1 36890753 36890832 -245302832 - MER82 DNA MER2_type -495 158 79 463 243 44 44 chr1 36890976 36891157 -245302507 - MIR SINE MIR -17 245 65 329 312 127 41 chr1 36891845 36892137 -245301527 + L1M2 LINE L1 793 1109 -5740 1404 238 103 51 chr1 36892466 36892933 -245300731 - LTR16C LTR ERVL 0 491 1 213 276 17 0 chr1 36893030 36893088 -245300576 + GA-rich Low_complexity Low_complexity 3 61 0 842 307 30 23 chr1 36893190 36893493 -245300171 - ERVL LTR ERVL -711 5053 4749 2173 93 11 0 chr1 36893537 36893840 -245299824 + AluSg SINE Alu 1 306 0 188 151 0 151 chr1 36893947 36894000 -245299664 - L2 LINE L2 -2099 1215 1171 2274 308 44 18 chr1 36894142 36895089 -245298575 - ERVL LTR ERVL -1336 4318 3347 319 228 13 13 chr1 36895121 36895200 -245298464 + LTR50 LTR ERVL 3 81 -714 432 55 0 0 chr1 36895218 36895273 -245298391 + (TA)n Simple_repeat Simple_repeat 1 55 0 226 200 71 0 chr1 36895273 36895343 -245298321 - L1MCa LINE L1 -4362 2064 1990 1171 347 14 6 chr1 36895361 36896118 -245297546 - ERVL LTR ERVL -3420 1576 1251 1157 224 174 3 chr1 36896252 36896850 -245296814 + LTR50 LTR ERVL 3 787 -8 2121 122 14 0 chr1 36897079 36897374 -245296290 - AluSx SINE Alu 0 312 14 377 298 28 79 chr1 36897388 36897603 -245296061 - ERVL LTR ERVL -4163 833 630 421 291 85 40 chr1 36898089 36898288 -245295376 - LTR16C LTR ERVL -96 395 188 301 244 146 0 chr1 36898413 36898495 -245295169 + L1MD2 LINE L1 6256 6349 -10 234 0 0 0 chr1 36898562 36898588 -245295076 + (CA)n Simple_repeat Simple_repeat 1 26 0 207 100 0 0 chr1 36898587 36898617 -245295047 + (TA)n Simple_repeat Simple_repeat 2 31 0 * 342 366 69 28 chr1 36898891 36899107 -245294557 + L1MEd LINE L1 535 759 -5360 442 321 101 52 chr1 36899132 36899537 -245294127 - LTR16A LTR ERVL -8 442 18 442 222 135 52 chr1 36899577 36899807 -245293857 + L1MEd LINE L1 817 1065 -5054 493 234 89 132 chr1 36899812 36899836 -245293828 + MIR SINE MIR 1 24 -238 1976 137 17 7 chr1 36899836 36900136 -245293528 + AluJb SINE Alu 1 303 -9 493 234 89 132 chr1 36900136 36900368 -245293296 + MIR SINE MIR 24 246 -16 471 304 82 16 chr1 36900370 36900886 -245292778 + L1MEd LINE L1 1052 1655 -857 292 227 13 40 chr1 36900906 36900981 -245292683 + L1ME1 LINE L1 44 116 -6280 7061 117 22 13 chr1 36900999 36901680 -245291984 - Tigger3b DNA MER2_type -1811 1217 520 2225 109 0 0 chr1 36901680 36902012 -245291652 + AluSx SINE Alu 1 332 0 7061 117 22 13 chr1 36902012 36902418 -245291246 - Tigger3b DNA MER2_type -2508 520 119 2362 184 35 78 chr1 36902418 36902995 -245290669 + MLT2B3 LTR ERVL 3 554 0 760 140 18 0 chr1 36902995 36903109 -245290555 - Tigger3b DNA MER2_type -1114 117 2 2728 226 90 9 chr1 36903109 36903807 -245289857 + L1ME1 LINE L1 114 868 -5528 647 158 62 89 chr1 36903808 36903954 -245289710 + FLAM_C SINE Alu 2 143 0 1917 168 0 13 chr1 36903966 36904269 -245289395 + AluJb SINE Alu 1 299 -13 5471 220 77 64 chr1 36904277 36905318 -245288346 + L1ME1 LINE L1 867 1893 -4322 2076 108 18 0 chr1 36905318 36905639 -245288025 + AluSq SINE Alu 1 326 0 5471 220 77 64 chr1 36905639 36905800 -245287864 + L1ME1 LINE L1 1893 2050 -4165 782 168 0 51 chr1 36905800 36905937 -245287727 + FRAM SINE Alu 39 168 -8 5471 220 77 64 chr1 36905937 36906345 -245287319 + L1ME1 LINE L1 2050 2451 -3764 2275 135 68 14 chr1 36906345 36906715 -245286949 + MLT1B LTR MaLR 1 390 0 5471 220 77 64 chr1 36906715 36907897 -245285767 + L1ME1 LINE L1 2451 3851 -2364 2361 64 10 7 chr1 36907897 36908192 -245285472 + AluY SINE Alu 1 296 -15 5471 220 77 64 chr1 36908192 36908420 -245285244 + L1ME1 LINE L1 3851 4075 -2140 5359 168 23 25 chr1 36908440 36910226 -245283438 - L1MA9 LINE L1 -38 6274 4480 3642 194 103 106 chr1 36910213 36910784 -245282880 + L1ME1 LINE L1 4053 4624 -1717 * 1843 172 0 3 chr1 36910784 36911081 -245282583 + AluJo SINE Alu 1 296 -16 3642 194 103 106 chr1 36911081 36911214 -245282450 + L1ME1 LINE L1 4624 4756 -1585 2140 134 0 7 chr1 36911214 36911521 -245282143 + AluSx SINE Alu 1 305 -7 3642 194 103 106 chr1 36911521 36912035 -245281629 + L1ME1 LINE L1 4756 5271 -1070 1075 220 0 0 chr1 36912035 36912208 -245281456 + FAM SINE Alu 1 173 -2 3642 194 103 106 chr1 36912208 36912535 -245281129 + L1ME1 LINE L1 5271 5598 -743 29422 64 9 5 chr1 36912546 36916519 -245277145 - L1PA6 LINE L1 -13 6141 2149 2322 101 0 0 chr1 36916519 36916815 -245276849 - AluY SINE Alu -15 296 1 29422 64 9 5 chr1 36916815 36917477 -245276187 - L1PA6 LINE L1 -4005 2149 1491 1587 203 36 43 chr1 36917480 36917518 -245276146 + L1ME1 LINE L1 5589 5626 -609 2463 147 52 7 chr1 36917518 36917926 -245275738 + MSTA LTR MaLR 1 426 -2 1587 203 36 43 chr1 36917926 36918017 -245275647 + L1ME1 LINE L1 5626 5716 -519 2660 135 45 43 chr1 36918017 36918440 -245275224 - MSTB LTR MaLR 0 426 3 1587 203 36 43 chr1 36918440 36918728 -245274936 + L1ME1 LINE L1 5716 6004 -231 764 184 116 0 chr1 36918728 36918875 -245274789 - AluSg/x SINE Alu -12 298 135 456 254 0 37 chr1 36918880 36919014 -245274650 + L1MA10 LINE L1 6206 6334 0 2271 86 0 0 chr1 36919147 36919490 -245274174 + AluSc SINE Alu 1 343 0 213 219 0 41 chr1 36919606 36919679 -245273985 + A-rich Low_complexity Low_complexity 3 72 0 6454 147 7 14 chr1 36919775 36921219 -245272445 + L1MA3 LINE L1 4838 6272 -33 27 29 0 0 chr1 36921240 36921274 -245272390 + AT_rich Low_complexity Low_complexity 1 34 0 235 372 0 0 chr1 36921796 36921874 -245271790 - L2 LINE L2 -5 3267 3190 2421 89 0 13 chr1 36921901 36922215 -245271449 + AluSg SINE Alu 1 310 0 181 289 66 90 chr1 36922224 36922435 -245271229 - L2 LINE L2 -211 3061 2856 355 241 45 18 chr1 36922838 36922950 -245270714 + MIR3 SINE MIR 6 120 -88 340 274 20 20 chr1 36923213 36923359 -245270305 - HAL1b LINE L1 -2 1346 1201 186 71 0 0 chr1 36923361 36923389 -245270275 + (CA)n Simple_repeat Simple_repeat 1 28 0 807 276 132 29 chr1 36923644 36923740 -245269924 - L1ME LINE L1 -404 5717 5632 1641 167 50 14 chr1 36923740 36924021 -245269643 + AluJb SINE Alu 1 291 -21 807 276 132 29 chr1 36924021 36924340 -245269324 - L1ME LINE L1 -489 5632 5259 480 35 0 0 chr1 36924509 36924567 -245269097 + (CA)n Simple_repeat Simple_repeat 2 59 0 408 287 67 24 chr1 36924691 36924855 -245268809 + MIR SINE MIR 20 190 -72 409 280 91 38 chr1 36925880 36926066 -245267598 - MIR SINE MIR -3 259 64 274 206 64 53 chr1 36926184 36926313 -245267351 + MIR SINE MIR 19 137 -71 480 294 49 6 chr1 36927092 36927255 -245266409 - MIR SINE MIR -33 229 60 207 254 18 0 chr1 36927520 36927575 -245266089 + GA-rich Low_complexity Low_complexity 3 58 0 277 113 245 0 chr1 36927676 36927729 -245265935 + MLT1K LTR MaLR 507 572 -16 1041 283 148 30 chr1 36927769 36928376 -245265288 + L2 LINE L2 2348 3064 -249 2273 109 70 56 chr1 36928376 36928546 -245265118 + THE1B LTR MaLR 1 167 -197 2378 104 0 0 chr1 36928546 36928854 -245264810 + AluSc SINE Alu 1 308 -1 2273 109 70 56 chr1 36928854 36929042 -245264622 + THE1B LTR MaLR 167 364 0 1041 283 148 30 chr1 36929042 36929128 -245264536 + L2 LINE L2 3064 3138 -175 2303 117 0 0 chr1 36929186 36929493 -245264171 + AluSq SINE Alu 1 307 -6 576 260 141 38 chr1 36929583 36929999 -245263665 + L1ME LINE L1 609 1073 -5046 817 239 118 44 chr1 36930172 36930608 -245263056 + L1ME LINE L1 1018 1494 -4635 839 312 27 37 chr1 36930608 36930983 -245262681 + L2 LINE L2 2834 3204 -109 27 29 0 0 chr1 36930997 36931031 -245262633 + AT_rich Low_complexity Low_complexity 1 34 0 502 244 32 0 chr1 36931217 36931340 -245262324 - MLT1L LTR MaLR 0 615 489 667 267 89 25 chr1 36931438 36931719 -245261945 - MLT1L LTR MaLR -299 316 18 209 277 188 9 chr1 36931778 36931890 -245261774 - MIR SINE MIR -68 194 63 2901 138 9 64 chr1 36931951 36932158 -245261506 + L1MB7 LINE L1 5670 5887 -297 2240 115 0 0 chr1 36932158 36932462 -245261202 + AluSx SINE Alu 1 304 -8 2901 138 9 64 chr1 36932462 36932789 -245260875 + L1MB7 LINE L1 5887 6175 -9 1933 209 136 6 chr1 36932794 36933296 -245260368 + MLT1G LTR MaLR 14 580 -10 310 296 21 37 chr1 36933651 36933840 -245259824 + L2 LINE L2 2251 2436 -878 2251 271 116 20 chr1 36933840 36934921 -245258743 + L2 LINE L2 2128 3313 0 2202 110 3 3 chr1 36934981 36935280 -245258384 - AluSg SINE Alu -11 299 1 22 0 0 0 chr1 36935443 36935465 -245258199 + AT_rich Low_complexity Low_complexity 1 22 0 346 244 79 24 chr1 36935469 36935596 -245258068 - L1ME4a LINE L1 -13 6108 5975 491 241 9 0 chr1 36935715 36935823 -245257841 + MIR SINE MIR 81 189 -73 289 303 22 0 chr1 36935873 36935962 -245257702 - MIR SINE MIR -15 247 157 623 276 81 24 chr1 36936625 36936871 -245256793 - MIR SINE MIR 0 262 3 305 326 34 39 chr1 36936928 36937106 -245256558 - MIR SINE MIR -65 197 21 334 252 168 17 chr1 36937208 36937327 -245256337 + L2 LINE L2 3175 3311 -2 797 278 72 32 chr1 36937547 36937846 -245255818 + MLT1L LTR MaLR 2 288 -327 2062 93 31 17 chr1 36937846 36938136 -245255528 - AluSx SINE Alu -18 294 1 797 278 72 32 chr1 36938136 36938393 -245255271 + MLT1L LTR MaLR 288 615 0 323 286 40 39 chr1 36938506 36938702 -245254962 - MIR SINE MIR -61 201 4 218 386 38 19 chr1 36938797 36938955 -245254709 + L2 LINE L2 2946 3106 -166 2335 101 0 0 chr1 36938982 36939279 -245254385 - AluSx SINE Alu -15 297 1 716 295 43 20 chr1 36939359 36939613 -245254051 + MIR SINE MIR 3 262 0 197 200 0 0 chr1 36939649 36939684 -245253980 + L2 LINE L2 3238 3272 0 412 240 188 6 chr1 36939760 36939924 -245253740 + MIR SINE MIR 38 244 -18 407 294 33 38 chr1 36940213 36940397 -245253267 + MIR3 SINE MIR 16 198 -10 248 348 25 9 chr1 36940928 36941084 -245252580 - MIR SINE MIR -62 146 26 1897 138 13 10 chr1 36941086 36941437 -245252227 - MER31A LTR ERV1 0 485 1 302 259 12 0 chr1 36941466 36941547 -245252117 - MLT1K LTR MaLR -2 586 505 433 297 23 40 chr1 36941579 36941754 -245251910 + MIR SINE MIR 29 200 -62 330 210 145 91 chr1 36941755 36941836 -245251828 + MER112 DNA MER1_type 21 96 -164 1387 145 86 48 chr1 36941836 36942126 -245251538 + AluJo SINE Alu 1 301 -11 222 37 0 0 chr1 36942126 36942153 -245251511 + (TA)n Simple_repeat Simple_repeat 2 28 0 330 210 145 91 chr1 36942153 36942211 -245251453 + MER112 DNA MER1_type 96 149 -111 189 74 0 0 chr1 36942211 36942238 -245251426 + (CTAGT)n Simple_repeat Simple_repeat 2 28 0 330 210 145 91 chr1 36942238 36942282 -245251382 + MER112 DNA MER1_type 149 216 -44 559 156 12 192 chr1 36942282 36942374 -245251290 + L1MA7 LINE L1 6155 6214 -86 1973 115 39 0 chr1 36942374 36942653 -245251011 + AluSx SINE Alu 1 290 -22 559 156 12 192 chr1 36942653 36942727 -245250937 + L1MA7 LINE L1 6214 6300 0 227 337 22 0 chr1 36942795 36942887 -245250777 + MIR SINE MIR 169 262 0 309 300 33 0 chr1 36943133 36943223 -245250441 - MIR SINE MIR 0 262 170 687 187 45 0 chr1 36943237 36943371 -245250293 + MLT1J2 LTR MaLR 3 142 -308 362 153 8 169 chr1 36943492 36943610 -245250054 + MER58B DNA MER1_type 231 329 -12 1973 99 3 11 chr1 36943612 36943985 -245249679 + AluSg SINE Alu 1 371 0 397 215 8 115 chr1 36944029 36944159 -245249505 - MLT1K LTR MaLR -350 238 123 1917 141 40 85 chr1 36944180 36944578 -245249086 + MLT1B LTR MaLR 1 380 -10 1995 133 23 17 chr1 36945016 36945361 -245248303 - THE1C LTR MaLR 0 375 29 930 67 42 0 chr1 36945472 36945749 -245247915 + L1PA11 LINE L1 6042 6323 0 226 330 64 0 chr1 36945876 36945985 -245247679 - L2 LINE L2 -335 2978 2863 744 292 116 26 chr1 36946110 36946643 -245247021 + L2 LINE L2 2446 3059 -213 760 239 46 87 chr1 36946757 36946911 -245246753 + MLT1I LTR MaLR 63 222 -187 2099 82 10 10 chr1 36946911 36947235 -245246429 + AluSp SINE Alu 1 313 0 760 239 46 87 chr1 36947235 36947446 -245246218 + MLT1I LTR MaLR 222 391 -18 290 271 65 28 chr1 36947456 36947563 -245246101 + L2 LINE L2 3202 3312 -1 429 269 44 94 chr1 36947824 36948121 -245245543 - L2 LINE L2 -159 3113 2832 495 219 33 66 chr1 36948186 36948337 -245245327 - L2 LINE L2 -210 3062 2917 186 103 0 0 chr1 36948559 36948588 -245245076 + (ATG)n Simple_repeat Simple_repeat 2 30 0 2765 172 93 38 chr1 36948727 36948970 -245244694 - L1MC3 LINE L1 -8 7777 7549 1998 107 21 0 chr1 36948970 36949259 -245244405 - AluSq SINE Alu -18 295 1 2765 172 93 38 chr1 36949259 36949679 -245243985 - L1MC3 LINE L1 -236 7549 7077 289 190 63 0 chr1 36950301 36950380 -245243284 - L1MA7 LINE L1 -1 6290 6207 192 343 221 15 chr1 36950402 36950863 -245242801 + L2 LINE L2 1939 2494 -820 665 160 0 0 chr1 36950945 36951051 -245242613 + FLAM_C SINE Alu 2 107 -36 255 61 0 0 chr1 36951235 36951268 -245242396 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 2023 112 3 3 chr1 36951309 36951603 -245242061 - AluSq SINE Alu -15 298 5 1337 241 82 66 chr1 36951986 36952563 -245241101 - MER97b DNA MER1_type? -466 587 2 826 227 106 5 chr1 36952566 36952773 -245240891 - L1MC4a LINE L1 -454 7354 7127 * 1132 160 55 5 chr1 36952763 36952982 -245240682 - L1MC4 LINE L1 -871 7171 6942 213 39 0 0 chr1 36953110 36953136 -245240528 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 248 257 229 12 chr1 36953202 36953352 -245240312 + MIR SINE MIR 11 192 -70 311 291 150 56 chr1 36953802 36954189 -245239475 + L2 LINE L2 2787 3208 -105 314 158 18 35 chr1 36954684 36954741 -245238923 + MER117 DNA MER1_type 95 150 -47 303 236 9 0 chr1 36954959 36955031 -245238633 + MIR SINE MIR 85 145 -63 196 286 0 18 chr1 36955188 36955244 -245238420 - L2 LINE L2 -13 3259 3205 186 319 0 0 chr1 36955268 36955315 -245238349 + L2 LINE L2 3210 3256 -16 291 287 37 61 chr1 36955806 36955973 -245237691 + MIR SINE MIR 45 205 -57 228 293 0 0 chr1 36956306 36956364 -245237300 - MLT1K LTR MaLR -340 248 191 768 227 137 82 chr1 36957152 36957396 -245236268 - MLT1D LTR MaLR 0 505 276 1794 164 0 7 chr1 36957396 36957683 -245235981 - AluJo SINE Alu -27 285 1 768 227 137 82 chr1 36957683 36957902 -245235762 - MLT1D LTR MaLR -229 276 6 211 163 113 88 chr1 36958059 36958139 -245235525 + MIR SINE MIR 110 191 -71 501 233 58 8 chr1 36958563 36958683 -245234981 - MIR SINE MIR -74 188 63 506 188 42 0 chr1 36958848 36958944 -245234720 + L2 LINE L2 3214 3313 0 268 256 88 36 chr1 36959372 36959426 -245234238 - L1ME4a LINE L1 -1 6120 6070 2200 66 3 53 chr1 36959426 36959744 -245233920 + AluY SINE Alu 1 302 -9 268 256 88 36 chr1 36959744 36959826 -245233838 - L1ME4a LINE L1 -51 6070 5977 1726 105 0 95 chr1 36959852 36960167 -245233497 + AluSx SINE Alu 1 285 -27 503 0 32 0 chr1 36960167 36960229 -245233435 + (CATAA)n Simple_repeat Simple_repeat 2 65 0 1308 118 11 0 chr1 36960460 36960646 -245233018 - AluSp SINE Alu -125 188 1 2269 97 0 0 chr1 36960656 36960956 -245232708 - AluY SINE Alu -11 300 1 847 307 30 23 chr1 36961000 36961303 -245232361 + ERVL LTR ERVL 4749 5053 -711 213 276 17 0 chr1 36961405 36961463 -245232201 + CT-rich Low_complexity Low_complexity 3 61 0 1259 236 103 51 chr1 36961560 36962027 -245231637 + LTR16C LTR ERVL 1 491 0 2222 95 3 3 chr1 36962080 36962386 -245231278 - AluSx SINE Alu -6 306 1 2742 172 14 22 chr1 36962386 36962892 -245230772 + MER82 DNA MER2_type 151 652 -1 2192 104 0 0 chr1 36963388 36963685 -245229979 + AluSx SINE Alu 1 297 -15 2087 126 0 0 chr1 36963829 36964131 -245229533 + AluSx SINE Alu 1 302 -10 421 213 170 7 chr1 36964160 36964301 -245229363 - MLT1J2 LTR MaLR -22 428 265 1027 261 38 10 chr1 36964453 36964744 -245228920 - L1ME LINE L1 -497 5667 5369 2333 275 105 19 chr1 36964786 36966212 -245227452 + L2 LINE L2 1756 3309 -4 218 291 173 27 chr1 36966230 36966340 -245227324 + L2 LINE L2 3143 3268 -4 2167 108 0 0 chr1 36966341 36966638 -245227026 - AluSx SINE Alu -15 297 1 365 225 93 70 chr1 36967009 36967138 -245226526 - L1ME4a LINE L1 -23 6098 5967 204 40 0 0 chr1 36967150 36967175 -245226489 + (TTTTA)n Simple_repeat Simple_repeat 3 27 0 1287 181 68 19 chr1 36967178 36967444 -245226220 - AluJb SINE Alu -33 279 1 2017 131 64 22 chr1 36967841 36968201 -245225463 - THE1C LTR MaLR 0 375 1 1113 163 45 24 chr1 36968484 36968730 -245224934 + L1 LINE L1 3242 3492 -2654 342 293 9 9 chr1 36968730 36968836 -245224828 - MIR SINE MIR -127 135 30 366 283 143 26 chr1 36969593 36969823 -245223841 - L2 LINE L2 -457 2857 2601 218 333 0 67 chr1 36969803 36969938 -245223726 + MIR SINE MIR 80 205 -57 * 204 250 104 0 chr1 36970037 36970085 -245223579 - MIR SINE MIR -145 117 65 215 276 40 0 chr1 36970417 36970493 -245223171 - L2 LINE L2 -601 2713 2635 658 291 62 26 chr1 36970719 36970946 -245222718 + MIR SINE MIR 22 256 -6 976 148 153 60 chr1 36972329 36972382 -245221282 - L1MB7 LINE L1 -20 6164 6117 2050 95 6 50 chr1 36972382 36972699 -245220965 + AluSx SINE Alu 3 305 -7 976 148 153 60 chr1 36972699 36972861 -245220803 - L1MB7 LINE L1 -67 6117 5929 1075 242 249 31 chr1 36973973 36974548 -245219116 + L2 LINE L2 2631 3313 0 403 221 14 107 chr1 36974581 36974682 -245218982 + MIR SINE MIR 103 189 -73 2107 118 0 13 chr1 36974682 36974816 -245218848 + AluSg SINE Alu 1 135 -175 1903 131 13 3 chr1 36974816 36975114 -245218550 + AluSg SINE Alu 1 301 -9 2107 118 0 13 chr1 36975114 36975292 -245218372 + AluSg SINE Alu 135 309 -1 403 221 14 107 chr1 36975292 36975330 -245218334 + MIR SINE MIR 189 229 -33 525 31 0 0 chr1 36975621 36975686 -245217978 - L1PA5 LINE L1 -3 6151 6087 234 91 0 0 chr1 37075910 37075943 -245117721 + (A)n Simple_repeat Simple_repeat 1 33 0 643 259 6 17 chr1 37076841 37077015 -245116649 + L3 LINE CR1 1315 1486 -91 561 275 53 6 chr1 37077549 37077720 -245115944 - MER58C DNA MER1_type -15 200 22 181 265 0 0 chr1 37077920 37077954 -245115710 + MER5A DNA MER1_type 49 82 -107 500 122 33 44 chr1 37077955 37078045 -245115619 - MER5A DNA MER1_type 0 189 101 228 100 0 0 chr1 37078052 37078082 -245115582 - Charlie1 DNA MER1_type -2731 30 1 279 173 0 0 chr1 37079006 37079058 -245114606 + (CA)n Simple_repeat Simple_repeat 1 52 0 358 268 134 0 chr1 37080994 37081091 -245112573 - MIR SINE MIR -62 146 37 280 252 13 113 chr1 37081280 37081409 -245112255 + MER5B DNA MER1_type 1 113 -65 1651 151 35 51 chr1 37081409 37081720 -245111944 - AluJo SINE Alu -6 306 1 280 252 13 113 chr1 37081720 37081749 -245111915 + MER5B DNA MER1_type 113 143 -35 2403 191 124 22 chr1 37081749 37082295 -245111369 + L1ME2 LINE L1 5553 6154 -10 261 0 0 0 chr1 37082300 37082329 -245111335 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 449 229 26 88 chr1 37082348 37082575 -245111089 + L1MC4 LINE L1 7829 8041 -1 756 255 48 5 chr1 37083817 37084025 -245109639 + MIR SINE MIR 12 228 -34 411 211 202 9 chr1 37084183 37084297 -245109367 + MER5A DNA MER1_type 47 182 -7 243 247 151 0 chr1 37084334 37084439 -245109225 - MIR SINE MIR -77 131 29 24 53 0 0 chr1 37084827 37084865 -245108799 + AT_rich Low_complexity Low_complexity 1 38 0 388 210 50 0 chr1 37085300 37085400 -245108264 + L1ME4a LINE L1 5974 6078 -43 290 358 72 24 chr1 37085965 37086172 -245107492 + MIR SINE MIR 46 262 0 995 278 109 33 chr1 37086796 37087246 -245106418 + L1MC4a LINE L1 5273 5756 -2052 984 255 29 0 chr1 37087293 37087536 -245106128 - MIR SINE MIR -2 260 11 278 298 15 38 chr1 37087614 37087745 -245105919 + L1MC4a LINE L1 5810 5937 -1871 198 0 0 0 chr1 37087790 37087812 -245105852 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 2417 76 0 0 chr1 37087895 37088186 -245105478 + AluY SINE Alu 1 291 -20 327 231 185 0 chr1 37088191 37088321 -245105343 + L1ME3A LINE L1 4628 4781 -1365 733 189 0 63 chr1 37088362 37088521 -245105143 - MER63 DNA MER1_type -276 786 12 1914 265 98 23 chr1 37088522 37089600 -245104064 + L1ME3A LINE L1 4800 5951 -219 1978 70 60 46 chr1 37089686 37089971 -245103693 - AluY SINE Alu -22 289 1 2479 77 0 0 chr1 37089974 37090274 -245103390 - AluSc SINE Alu -8 301 2 1168 309 109 8 chr1 37090535 37091065 -245102599 + L2 LINE L2 1848 2431 -883 345 240 322 13 chr1 37091502 37091735 -245101929 - L2 LINE L2 -5 3308 3004 1414 252 81 28 chr1 37091922 37092035 -245101629 - L1MEd LINE L1 -2807 3322 3216 2206 128 0 7 chr1 37092035 37092340 -245101324 - AluSx SINE Alu -8 304 2 1414 252 81 28 chr1 37092340 37093221 -245100443 - L1MEd LINE L1 -2913 3216 2233 437 214 0 22 chr1 37093314 37093403 -245100261 - MER20 DNA MER1_type -132 87 1 523 205 18 0 chr1 37093405 37093517 -245100147 - L1MEd LINE L1 -3893 2236 2123 1030 279 69 73 chr1 37093626 37094368 -245099296 - L1MEd LINE L1 -4875 1244 506 2303 98 0 19 chr1 37095299 37095615 -245098049 - AluSg SINE Alu 0 310 1 281 290 180 25 chr1 37095933 37096178 -245097486 + L1ME4a LINE L1 5523 5805 -316 341 286 87 0 chr1 37096262 37096423 -245097241 + L1ME4a LINE L1 5944 6118 -3 207 0 0 0 chr1 37098301 37098324 -245095340 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1650 198 74 37 chr1 37098337 37098410 -245095254 + L1M4 LINE L1 3828 3897 -2249 2143 103 3 7 chr1 37098410 37098710 -245094954 - AluSc SINE Alu -10 299 1 1650 198 74 37 chr1 37098710 37099095 -245094569 + L1M4 LINE L1 3897 4303 -1843 405 236 64 36 chr1 37099099 37099209 -245094455 - MIR SINE MIR -145 117 5 2226 99 0 3 chr1 37099794 37100117 -245093547 - AluSx SINE Alu 0 322 1 378 0 0 0 chr1 37101028 37101070 -245092594 + (CA)n Simple_repeat Simple_repeat 1 42 0 6589 247 68 20 chr1 37101714 37103136 -245090528 + L1MEc LINE L1 12 1365 -4850 2492 69 0 28 chr1 37103136 37103454 -245090210 + AluY SINE Alu 1 309 -2 6589 247 68 20 chr1 37103454 37105657 -245088007 + L1MEc LINE L1 1365 3771 -2444 898 222 75 48 chr1 37105790 37106042 -245087622 + MIR SINE MIR 4 262 0 1621 206 59 73 chr1 37106137 37106463 -245087201 - MLT1D LTR MaLR -4 501 183 2664 30 0 0 chr1 37106463 37106759 -245086905 - AluY SINE Alu -15 296 1 1621 206 59 73 chr1 37106759 37106938 -245086726 - MLT1D LTR MaLR -322 183 3 499 293 59 70 chr1 37107373 37107468 -245086196 + MIR SINE MIR 10 105 -157 1688 182 52 3 chr1 37107468 37107759 -245085905 - AluJo SINE Alu -5 307 3 499 293 59 70 chr1 37107759 37107919 -245085745 + MIR SINE MIR 105 262 0 200 372 92 19 chr1 37108691 37108898 -245084766 + L2 LINE L2 2638 2859 -455 254 315 183 19 chr1 37109020 37109233 -245084431 + L2 LINE L2 3025 3272 0 453 312 40 25 chr1 37109796 37109995 -245083669 - MIR SINE MIR -49 213 12 2148 107 7 7 chr1 37110668 37110978 -245082686 + AluSg SINE Alu 1 310 0 21 36 0 0 chr1 37111508 37111536 -245082128 + AT_rich Low_complexity Low_complexity 1 28 0 295 287 139 0 chr1 37111825 37111926 -245081738 - L2 LINE L2 0 3313 3199 251 315 45 0 chr1 37112269 37112358 -245081306 - L2 LINE L2 -6 3266 3174 389 132 66 66 chr1 37112493 37112569 -245081095 + MLT1F1 LTR MaLR 430 567 0 1122 185 6 6 chr1 37113702 37113880 -245079784 - MER45A DNA AcHobo 0 178 1 619 215 153 57 chr1 37113889 37114117 -245079547 + MIR SINE MIR 1 250 -12 456 308 73 65 chr1 37114267 37114621 -245079043 + L2 LINE L2 1708 2064 -1250 239 314 58 16 chr1 37114734 37114855 -245078809 + L2 LINE L2 2092 2217 -1097 346 240 306 0 chr1 37114922 37115043 -245078621 - MIR SINE MIR -54 208 51 520 298 60 82 chr1 37116257 37116573 -245077091 + L2 LINE L2 2937 3245 -27 336 279 75 91 chr1 37117491 37117931 -245075733 + L1M2 LINE L1 836 1268 -5581 339 265 238 22 chr1 37118219 37118404 -245075260 - MIR SINE MIR -6 256 32 326 297 8 39 chr1 37118525 37118653 -245075011 - MIR SINE MIR -79 183 60 * 534 271 70 51 chr1 37118627 37118841 -245074823 - MIR SINE MIR -10 252 35 2275 102 3 0 chr1 37119094 37119398 -245074266 - AluSq SINE Alu -8 305 1 1463 181 99 14 chr1 37119510 37119792 -245073872 - AluJo SINE Alu -6 306 1 775 198 128 12 chr1 37119964 37120136 -245073528 + MIR SINE MIR 12 203 -59 21 0 0 0 chr1 37120182 37120203 -245073461 + AT_rich Low_complexity Low_complexity 1 21 0 261 57 0 0 chr1 37120827 37120862 -245072802 + (TG)n Simple_repeat Simple_repeat 1 35 0 881 264 43 4 chr1 37120937 37121168 -245072496 + MIR SINE MIR 2 241 -21 496 240 72 8 chr1 37121330 37121497 -245072167 + MIR SINE MIR 15 197 -63 407 258 81 28 chr1 37121610 37121808 -245071856 - MIR SINE MIR -3 259 5 231 182 23 0 chr1 37121918 37121962 -245071702 + L2 LINE L2 3268 3312 -1 238 325 26 0 chr1 37121978 37122055 -245071609 - L3b LINE CR1 -227 1356 1278 2309 183 36 9 chr1 37122279 37122726 -245070938 - MLT1C LTR MaLR -8 459 1 314 228 25 13 chr1 37123019 37123098 -245070566 - MIR SINE MIR -76 132 53 245 221 106 62 chr1 37123421 37123534 -245070130 + L2 LINE L2 3195 3312 -1 451 261 0 0 chr1 37124214 37124302 -245069362 - MER5A DNA MER1_type -21 168 81 620 251 139 9 chr1 37124328 37124551 -245069113 + MIR SINE MIR 11 262 0 1879 164 3 3 chr1 37124701 37125006 -245068658 - AluJb SINE Alu -7 305 1 196 0 56 56 chr1 37126695 37126731 -245066933 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 313 231 13 26 chr1 37126733 37126811 -245066853 - L2 LINE L2 -17 3255 3179 232 341 0 22 chr1 37127031 37127122 -245066542 - MIR SINE MIR -154 108 20 2162 121 7 0 chr1 37127240 37127546 -245066118 + AluSx SINE Alu 1 308 -4 628 270 45 60 chr1 37128063 37128263 -245065401 + MER63A DNA MER1_type 8 204 -6 607 168 5 43 chr1 37128280 37128465 -245065199 + CT-rich Low_complexity Low_complexity 3 180 0 592 261 82 49 chr1 37128520 37128866 -245064798 + MLT1J LTR MaLR 46 408 -42 573 128 0 0 chr1 37128866 37128944 -245064720 - MADE1 DNA Mariner -2 78 1 592 261 82 49 chr1 37128944 37128981 -245064683 + MLT1J LTR MaLR 408 442 -8 549 313 73 13 chr1 37129107 37129340 -245064324 - MLT1I LTR MaLR -2 407 161 381 210 49 0 chr1 37129492 37129573 -245064091 - MIR SINE MIR -99 163 79 324 364 45 23 chr1 37129764 37129940 -245063724 + MIR3 SINE MIR 15 194 -14 336 344 33 0 chr1 37130074 37130196 -245063468 - L2 LINE L2 -38 3234 3109 186 302 121 16 chr1 37130311 37130493 -245063171 - L2 LINE L2 -913 2401 2201 592 296 39 10 chr1 37131058 37131261 -245062403 - MIR SINE MIR -31 231 23 568 298 56 20 chr1 37131302 37131500 -245062164 + MIR SINE MIR 32 236 -26 2566 121 25 0 chr1 37131715 37132070 -245061594 + THE1B LTR MaLR 1 364 0 341 176 0 99 chr1 37132413 37132504 -245061160 - MLT1L LTR MaLR -533 82 1 344 244 111 56 chr1 37132681 37132861 -245060803 - MLT1J LTR MaLR -23 488 299 246 224 60 0 chr1 37132874 37132941 -245060723 - MLT1J LTR MaLR -336 175 105 264 336 107 38 chr1 37133120 37133623 -245060041 - L2 LINE L2 -1392 1922 1385 2184 93 21 0 chr1 37133777 37134067 -245059597 - AluSp SINE Alu -17 296 1 1460 261 90 19 chr1 37134380 37134856 -245058808 - LTR33 LTR ERVL 0 521 12 1182 202 5 0 chr1 37135189 37135402 -245058262 + MLT1D LTR MaLR 1 214 -291 383 39 0 0 chr1 37135380 37135431 -245058233 + AluY SINE Alu 252 302 0 * 11099 182 19 8 chr1 37135487 37136941 -245056723 + L1P5 LINE L1 2932 4440 -1711 297 0 0 0 chr1 37136941 37136974 -245056690 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 11099 182 19 8 chr1 37136974 37138261 -245055403 + L1P5 LINE L1 4440 5710 -441 1630 88 18 9 chr1 37138257 37138485 -245055179 - L1PB1 LINE L1 -108 6043 5814 * 949 145 7 0 chr1 37138476 37138628 -245055036 - L1PB1 LINE L1 -627 5524 5372 * 723 84 11 0 chr1 37138628 37138714 -245054950 + L1PB1 LINE L1 6053 6148 -3 7278 106 10 16 chr1 37138774 37139799 -245053865 + L1MA2 LINE L1 5121 6151 -153 2177 116 0 0 chr1 37139799 37140083 -245053581 + AluSx SINE Alu 1 284 -28 1295 128 0 20 chr1 37139912 37140083 -245053581 + AluSg/x SINE Alu 114 287 -25 7278 106 10 16 chr1 37140083 37140269 -245053395 + L1MA2 LINE L1 6151 6304 0 234 0 0 0 chr1 37140083 37140109 -245053555 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1295 128 0 20 chr1 37140269 37140298 -245053366 + AluSg/x SINE Alu 286 312 0 628 188 48 4 chr1 37140308 37140505 -245053159 + MLT1D LTR MaLR 251 505 0 204 175 0 0 chr1 37140529 37140569 -245053095 + L2 LINE L2 3273 3312 -1 1799 174 19 80 chr1 37141158 37141573 -245052091 + MLT1B LTR MaLR 1 390 0 1946 104 0 73 chr1 37141939 37142256 -245051408 + AluSx SINE Alu 11 304 -8 288 0 0 0 chr1 37142748 37142780 -245050884 + (GA)n Simple_repeat Simple_repeat 2 33 0 1107 269 133 11 chr1 37142999 37143467 -245050197 - MLT1G1 LTR MaLR 0 595 3 205 274 48 0 chr1 37143502 37143564 -245050100 - MIR SINE MIR -147 115 51 248 275 29 0 chr1 37143567 37143636 -245050028 + (CATA)n Simple_repeat Simple_repeat 4 74 0 1784 165 0 3 chr1 37143704 37144019 -245049645 - AluJb SINE Alu 0 314 1 1671 233 93 50 chr1 37144080 37144734 -245048930 + L2 LINE L2 2443 3121 -192 2514 58 0 0 chr1 37144734 37145043 -245048621 - AluY SINE Alu -2 309 1 1671 233 93 50 chr1 37145043 37145226 -245048438 + L2 LINE L2 3121 3295 -18 255 133 0 0 chr1 37145604 37145649 -245048015 + (CA)n Simple_repeat Simple_repeat 2 46 0 2072 270 55 50 chr1 37145700 37145956 -245047708 - L2 LINE L2 -339 2975 2722 1885 127 0 31 chr1 37145956 37146297 -245047367 - AluSx SINE Alu 0 332 1 2072 270 55 50 chr1 37146297 37146933 -245046731 - L2 LINE L2 -592 2722 2078 186 271 118 23 chr1 37148380 37148534 -245045130 + MIR SINE MIR 87 262 0 1943 123 3 32 chr1 37148619 37148935 -245044729 + AluSx SINE Alu 1 307 -5 1970 74 11 11 chr1 37148940 37149210 -245044454 + AluY SINE Alu 40 309 -2 197 232 36 0 chr1 37149217 37149273 -245044391 + MIR SINE MIR 204 261 -1 590 274 7 0 chr1 37150024 37150177 -245043487 + MIR3 SINE MIR 48 201 -7 1789 138 33 0 chr1 37150410 37150686 -245042978 + AluJo SINE Alu 1 285 -27 201 74 0 0 chr1 37150686 37150713 -245042951 + (AATAG)n Simple_repeat Simple_repeat 4 30 0 475 188 18 45 chr1 37150973 37151085 -245042579 + LTR67 LTR ERVL 446 554 -3 1664 189 43 37 chr1 37151494 37151613 -245042051 + MSTB LTR MaLR 76 193 -233 1307 88 0 88 chr1 37151613 37151839 -245041825 + L1PA13 LINE L1 5958 6163 0 1664 189 43 37 chr1 37151839 37152068 -245041596 + MSTB LTR MaLR 193 426 0 432 265 88 14 chr1 37152328 37152475 -245041189 - MIR SINE MIR -82 180 23 2288 77 3 0 chr1 37152482 37152781 -245040883 - AluSq SINE Alu -13 300 1 360 138 0 0 chr1 37156096 37156154 -245037510 - AluSp/q SINE Alu -8 295 238 524 289 88 36 chr1 37156478 37156727 -245036937 + L2 LINE L2 2851 3112 -160 237 153 306 24 chr1 37156763 37156848 -245036816 + Charlie7 DNA MER1_type 2 110 -2502 681 245 118 15 chr1 37156857 37157061 -245036603 + MIR SINE MIR 30 254 -8 268 225 0 150 chr1 37157062 37157182 -245036482 + Charlie7 DNA MER1_type 2508 2609 -3 539 277 36 24 chr1 37157730 37157896 -245035768 + MIR SINE MIR 21 188 -74 233 255 0 0 chr1 37158032 37158079 -245035585 - MIR SINE MIR 0 262 216 833 143 0 23 chr1 37158147 37158280 -245035384 - FLAM_C SINE Alu -11 132 3 725 292 15 15 chr1 37158282 37158484 -245035180 - MIR SINE MIR -5 257 56 624 284 39 29 chr1 37158535 37158739 -245034925 - MIR SINE MIR -56 206 1 218 302 0 0 chr1 37158800 37158863 -245034801 - MIR SINE MIR 0 262 200 612 270 100 50 chr1 37158863 37159115 -245034549 - MIR SINE MIR 0 262 6 201 74 0 0 chr1 37160073 37160100 -245033564 + (CCTA)n Simple_repeat Simple_repeat 4 30 0 212 274 98 20 chr1 37160225 37160327 -245033337 + L2 LINE L2 2677 2786 -528 494 349 71 40 chr1 37160430 37160754 -245032910 + L2 LINE L2 2936 3269 -3 644 241 80 27 chr1 37160909 37161096 -245032568 - MER117 DNA MER1_type 0 197 1 394 293 141 37 chr1 37161463 37161654 -245032010 + Charlie8 DNA MER1_type 4 214 -2203 419 293 8 32 chr1 37161829 37161952 -245031712 - MIR3 SINE MIR -87 121 2 303 315 79 45 chr1 37161990 37162168 -245031496 + MIR SINE MIR 5 188 -74 2282 76 0 32 chr1 37162487 37162802 -245030862 - AluSg SINE Alu -5 305 1 233 266 25 38 chr1 37162878 37162957 -245030707 + MIR SINE MIR 171 248 -14 330 341 72 0 chr1 37163350 37163488 -245030176 + L2 LINE L2 3158 3305 -8 306 294 40 135 chr1 37163765 37164061 -245029603 - L2 LINE L2 -20 3252 2985 227 189 0 57 chr1 37164574 37164627 -245029037 - L2 LINE L2 -18 3295 3246 880 281 161 18 chr1 37164937 37165484 -245028180 - L2 LINE L2 -526 2788 2164 394 282 18 9 chr1 37165741 37165851 -245027813 - MIR SINE MIR -1 261 151 1178 250 16 4 chr1 37166649 37166901 -245026763 - MIR SINE MIR -6 256 2 1008 92 0 0 chr1 37167061 37167192 -245026472 + AluJb SINE Alu 1 131 -181 727 265 51 10 chr1 37167361 37167557 -245026107 - MIR SINE MIR -1 261 58 254 88 0 0 chr1 37168168 37168202 -245025462 + MIR3 SINE MIR 126 159 -49 8543 181 30 40 chr1 37168700 37170389 -245023275 - L1MC1 LINE L1 0 6613 4909 783 176 0 22 chr1 37170389 37170525 -245023139 + FLAM_C SINE Alu 1 133 0 8543 181 30 40 chr1 37170525 37171453 -245022211 - L1MC1 LINE L1 -1704 4909 3974 1995 123 0 13 chr1 37171453 37171753 -245021911 - AluSg SINE Alu -14 296 1 8543 181 30 40 chr1 37171753 37172241 -245021423 - L1MC1 LINE L1 -2639 3974 3541 1552 175 10 20 chr1 37172241 37172544 -245021120 - AluJb SINE Alu -10 302 3 8543 181 30 40 chr1 37172544 37172733 -245020931 - L1MC1 LINE L1 -3072 3541 3352 3312 161 54 52 chr1 37172724 37173422 -245020242 - L1MC1 LINE L1 -5722 704 5 * 410 321 31 21 chr1 37173659 37173852 -245019812 - MARNA DNA Mariner -148 438 244 423 258 123 26 chr1 37173852 37174120 -245019544 + L1MC4a LINE L1 5882 6175 -1633 1581 176 3 33 chr1 37174483 37174785 -245018879 - AluJo SINE Alu -19 293 1 3985 154 62 23 chr1 37175250 37176245 -245017419 - L1MB3 LINE L1 -173 6010 4969 26 50 0 0 chr1 37176428 37176468 -245017196 + AT_rich Low_complexity Low_complexity 1 40 0 474 270 185 10 chr1 37177895 37178095 -245015569 + MIR SINE MIR 28 262 0 706 218 48 12 chr1 37178453 37178618 -245015046 - MIR SINE MIR 0 262 92 230 200 120 0 chr1 37179336 37179386 -245014278 - MIR SINE MIR -88 174 119 197 279 50 90 chr1 37179613 37179835 -245013829 - L3 LINE CR1 -122 1455 1243 386 233 33 22 chr1 37181715 37181805 -245011859 - L2 LINE L2 -1 3271 3181 990 162 137 42 chr1 37181805 37182056 -245011608 + MLT1A1 LTR MaLR 1 305 -85 794 289 86 6 chr1 37182317 37182642 -245011022 - L2 LINE L2 -1919 1395 1045 246 62 0 0 chr1 37182642 37182674 -245010990 + (TA)n Simple_repeat Simple_repeat 1 32 0 784 178 22 4 chr1 37182674 37182896 -245010768 - L1MA4A LINE L1 -72 6231 5945 2007 196 57 77 chr1 37182942 37183089 -245010575 + L1MC5 LINE L1 6644 6792 -1169 2355 56 0 38 chr1 37183089 37183409 -245010255 + AluY SINE Alu 1 308 -3 2007 196 57 77 chr1 37183409 37183908 -245009756 + L1MC5 LINE L1 6792 7277 -684 992 223 50 22 chr1 37184058 37184377 -245009287 + L1MC5 LINE L1 7354 7681 -280 511 219 43 74 chr1 37184920 37185082 -245008582 - MIR SINE MIR -3 259 104 1074 138 0 0 chr1 37185874 37186034 -245007630 + FRAM SINE Alu 1 159 -17 545 282 68 63 chr1 37187813 37188241 -245005423 - L1ME4a LINE L1 -27 6094 5665 2192 82 3 0 chr1 37188241 37188532 -245005132 + AluY SINE Alu 1 292 -19 545 282 68 63 chr1 37188532 37188847 -245004817 - L1ME4a LINE L1 -456 5665 5353 312 120 0 0 chr1 37188996 37189046 -245004618 + (CA)n Simple_repeat Simple_repeat 1 50 0 407 297 92 36 chr1 37189149 37189509 -245004155 + L1ME4a LINE L1 5512 5891 -230 183 234 43 0 chr1 37190142 37190189 -245003475 + MIR SINE MIR 100 148 -114 2421 69 0 0 chr1 37190984 37191290 -245002374 + AluY SINE Alu 1 306 -5 471 325 137 22 chr1 37191400 37191809 -245001855 - L2 LINE L2 0 3313 2858 408 293 17 11 chr1 37191813 37192071 -245001593 + L1ME3A LINE L1 5540 5885 -277 752 285 141 47 chr1 37192379 37192912 -245000752 - L2 LINE L2 -479 2835 2253 205 338 91 39 chr1 37193198 37193352 -245000312 - MIR SINE MIR -72 190 29 200 443 18 0 chr1 37193385 37193498 -245000166 - L2 LINE L2 -203 3069 2955 275 290 228 28 chr1 37193773 37193918 -244999746 - L3 LINE CR1 -169 1408 1235 338 281 123 92 chr1 37194835 37195095 -244998569 - L2 LINE L2 -1 3271 3004 744 264 123 9 chr1 37195160 37195372 -244998292 - MIR SINE MIR -25 237 2 284 229 250 7 chr1 37195378 37195518 -244998146 - MER113 DNA MER1_type? -225 296 123 3442 186 68 3 chr1 37195520 37196226 -244997438 - L1MB4 LINE L1 -1 6179 5428 6555 115 11 21 chr1 37196255 37197445 -244996219 - L1MA8 LINE L1 -1 6290 5112 2800 203 47 0 chr1 37197460 37198130 -244995534 - L1MB4 LINE L1 -756 5428 4730 1102 187 0 32 chr1 37198141 37198360 -244995304 + AluJo SINE Alu 85 296 -16 1286 181 43 17 chr1 37198406 37198705 -244994959 - L1MB4 LINE L1 -1433 4713 4407 21 0 0 0 chr1 37198724 37198745 -244994919 + AT_rich Low_complexity Low_complexity 1 21 0 354 283 119 44 chr1 37198767 37198926 -244994738 + MIR SINE MIR 72 242 -20 468 278 29 28 chr1 37199209 37199389 -244994275 - MIR SINE MIR -69 139 11 1000 71 0 0 chr1 37199543 37199670 -244993994 - AluY SINE Alu -9 302 176 1514 232 78 11 chr1 37199690 37200125 -244993539 + Charlie4a DNA MER1_type 33 496 -12 293 341 31 8 chr1 37200681 37200810 -244992854 - L3 LINE CR1 -472 1105 974 314 315 138 9 chr1 37200811 37200969 -244992695 + MIR SINE MIR 17 191 -71 471 335 23 38 chr1 37200975 37201238 -244992426 - MIR SINE MIR -2 260 2 3544 121 21 31 chr1 37201358 37201521 -244992143 - L1MA7 LINE L1 0 6291 6128 2228 92 3 0 chr1 37201521 37201813 -244991851 + AluSq SINE Alu 1 293 -20 3544 121 21 31 chr1 37201813 37202268 -244991396 - L1MA7 LINE L1 -163 6128 5679 326 290 108 54 chr1 37202773 37203037 -244990627 + L1ME LINE L1 5194 5480 -698 423 271 72 32 chr1 37203077 37203328 -244990336 + L1ME LINE L1 5547 5807 -314 189 355 13 26 chr1 37204077 37204153 -244989511 + MER5A DNA MER1_type 43 117 -72 706 218 48 12 chr1 37205562 37205727 -244987937 - MIR SINE MIR 0 262 92 202 200 140 20 chr1 37206444 37206494 -244987170 - MIR SINE MIR -88 174 119 2247 80 0 26 chr1 37206891 37207202 -244986462 + AluSx SINE Alu 1 303 -9 536 132 66 0 chr1 37207639 37207745 -244985919 - L1MB2 LINE L1 -8 6163 6051 561 254 24 18 chr1 37208654 37208823 -244984841 - L1MB2 LINE L1 -108 6063 5894 243 0 0 0 chr1 37208823 37208850 -244984814 + (T)n Simple_repeat Simple_repeat 1 27 0 192 258 94 74 chr1 37209350 37209606 -244984058 - L2 LINE L2 -810 2504 2244 199 140 40 20 chr1 37211929 37211979 -244981685 + T-rich Low_complexity Low_complexity 5 55 0 559 75 32 65 chr1 37212366 37212459 -244981205 - FLAM_C SINE Alu -17 126 37 2828 93 3 3 chr1 37215011 37215386 -244978278 + THE1C LTR MaLR 1 375 0 826 163 0 15 chr1 37215961 37216096 -244977568 + AluSq/x SINE Alu 2 134 -179 399 286 27 27 chr1 37216096 37216243 -244977421 + L2 LINE L2 372 518 -2796 349 289 90 26 chr1 37216260 37216416 -244977248 - MIR SINE MIR -2 260 95 1847 195 51 34 chr1 37216571 37217038 -244976626 - L1MC5 LINE L1 -524 7831 7357 5314 136 8 14 chr1 37217064 37217777 -244975887 - L1PB3 LINE L1 -5 6149 5440 2209 97 3 3 chr1 37217777 37218086 -244975578 - AluSx SINE Alu -3 309 1 5314 136 8 14 chr1 37218086 37218228 -244975436 - L1PB3 LINE L1 -714 5440 5299 594 171 9 0 chr1 37218301 37218412 -244975252 - L1PB4 LINE L1 -3 6153 6042 504 259 228 4 chr1 37218434 37218666 -244974998 - L1MC5 LINE L1 -2269 5933 5650 232 319 72 32 chr1 37218795 37219074 -244974590 - L1MC5 LINE L1 -3558 2982 2693 344 308 103 34 chr1 37219141 37219404 -244974260 - L1MC5 LINE L1 -3895 2645 2365 1125 152 47 21 chr1 37219530 37219721 -244973943 + MER20 DNA MER1_type 23 218 -1 333 298 95 38 chr1 37219771 37219929 -244973735 - HAL1b LINE L1 -499 849 683 7166 48 6 44 chr1 37220180 37221322 -244972342 + SVA Other Other 405 1386 0 195 100 0 0 chr1 37221387 37221417 -244972247 + (GAAAA)n Simple_repeat Simple_repeat 1 30 0 557 355 99 53 chr1 37221491 37221769 -244971895 + HAL1 LINE L1 824 1088 -1419 1703 127 3 21 chr1 37221769 37222052 -244971612 + AluSx SINE Alu 34 311 -1 557 355 99 53 chr1 37222052 37222450 -244971214 + HAL1 LINE L1 1088 1531 -976 344 301 53 0 chr1 37222450 37222583 -244971081 + HAL1b LINE L1 475 614 -734 1732 160 80 1 chr1 37222704 37223273 -244970391 - L1M3 LINE L1 -593 5590 4969 26 50 0 0 chr1 37223456 37223496 -244970168 + AT_rich Low_complexity Low_complexity 1 40 0 487 270 185 10 chr1 37224922 37225122 -244968542 + MIR SINE MIR 28 262 0 678 234 22 56 chr1 37226271 37226502 -244967162 - ORSL DNA AcHobo 0 275 53 201 147 0 0 chr1 37227842 37227876 -244965788 + (TG)n Simple_repeat Simple_repeat 1 34 0 1694 176 110 6 chr1 37227954 37228308 -244965356 + MLT2D LTR ERVL 6 442 -22 322 170 11 117 chr1 37228348 37228442 -244965222 + L1MC4 LINE L1 6619 6702 -1340 252 160 0 20 chr1 37228515 37228565 -244965099 + MLT2D LTR ERVL 472 520 0 709 274 58 4 chr1 37228581 37228807 -244964857 + MIR SINE MIR 8 245 -17 24 32 0 0 chr1 37230791 37230822 -244962842 + AT_rich Low_complexity Low_complexity 1 31 0 425 113 0 0 chr1 37230828 37230899 -244962765 - L1MA7 LINE L1 0 6291 6221 517 138 0 0 chr1 37230899 37230979 -244962685 + L1MA6 LINE L1 6115 6194 -106 2010 113 177 8 chr1 37231808 37232170 -244961494 + MSTA LTR MaLR 6 428 0 286 204 0 0 chr1 37234927 37234976 -244958688 - L2 LINE L2 -2 3270 3222 856 273 151 3 chr1 37234995 37235387 -244958277 - L2 LINE L2 -280 3033 2584 834 239 200 49 chr1 37235604 37236073 -244957591 + MLT1H1 LTR MaLR 1 540 -15 4231 147 25 44 chr1 37236074 37236877 -244956787 + L1MB7 LINE L1 5380 6167 -17 319 188 68 21 chr1 37236891 37236994 -244956670 + L1M4c LINE L1 2148 2256 -3890 4413 150 9 4 chr1 37237045 37237731 -244955933 + Tigger1 DNA MER2_type 1 689 -1729 472 153 0 0 chr1 37237724 37237796 -244955868 - MER20 DNA MER1_type -42 177 106 * 11475 101 30 25 chr1 37237809 37238118 -244955546 + Tigger1 DNA MER2_type 685 991 -1427 2164 91 0 13 chr1 37238118 37238416 -244955248 - AluSc SINE Alu -6 303 10 11475 101 30 25 chr1 37238416 37239831 -244953833 + Tigger1 DNA MER2_type 991 2417 -1 767 112 0 124 chr1 37239863 37240041 -244953623 + Tigger1 DNA MER2_type 1609 1764 -654 2781 96 5 5 chr1 37240573 37240948 -244952716 + THE1C LTR MaLR 1 375 0 797 262 31 35 chr1 37241033 37241262 -244952402 - MIR SINE MIR -14 248 21 399 41 0 0 chr1 37241550 37241599 -244952065 + (CA)n Simple_repeat Simple_repeat 2 50 0 236 171 0 0 chr1 37242805 37242840 -244950824 + MLT1L LTR MaLR 360 394 -221 1305 309 44 2 chr1 37244377 37244807 -244948857 + L2 LINE L2 2862 3309 -4 340 335 96 11 chr1 37245224 37245412 -244948252 + MIR SINE MIR 2 205 -57 382 307 60 92 chr1 37245412 37245793 -244947871 - L2 LINE L2 -2 3270 2902 339 264 147 58 chr1 37245878 37246136 -244947528 - L2 LINE L2 -1150 2164 1884 2335 133 16 67 chr1 37246516 37246952 -244946712 + MLT2D LTR ERVL 1 414 0 413 274 26 34 chr1 37247050 37247167 -244946497 + L2 LINE L2 3149 3264 -8 325 344 58 19 chr1 37247188 37247447 -244946217 - L2 LINE L2 -1665 1649 1381 433 284 117 0 chr1 37247480 37247642 -244946022 - MIR SINE MIR -65 197 17 242 404 12 0 chr1 37247653 37247819 -244945845 - L2 LINE L2 -1929 1385 1218 * 257 269 30 15 chr1 37247811 37247878 -244945786 + L2 LINE L2 3234 3301 -12 201 39 0 0 chr1 37248003 37248029 -244945635 + (CAT)n Simple_repeat Simple_repeat 1 26 0 186 43 0 0 chr1 37248031 37248054 -244945610 + (CAG)n Simple_repeat Simple_repeat 1 23 0 629 304 68 41 chr1 37248060 37248280 -244945384 - MIR SINE MIR -24 238 13 692 202 0 0 chr1 37248500 37248624 -244945040 - FLAM_A SINE Alu -8 134 11 23 0 0 0 chr1 37249385 37249408 -244944256 + AT_rich Low_complexity Low_complexity 1 23 0 298 297 42 63 chr1 37249907 37250287 -244943377 + HAL1b LINE L1 39 410 -938 372 174 0 0 chr1 37250301 37250370 -244943294 + L1MA9 LINE L1 5938 6006 -306 883 299 98 24 chr1 37250372 37251379 -244942285 + L1M4 LINE L1 2110 3191 -2955 24 0 0 0 chr1 37251411 37251435 -244942229 + AT_rich Low_complexity Low_complexity 1 24 0 2026 131 3 0 chr1 37252122 37252419 -244941245 - AluSx SINE Alu -14 298 1 247 311 89 22 chr1 37253661 37253796 -244939868 + MER5B DNA MER1_type 29 172 -6 351 272 118 15 chr1 37253818 37253954 -244939710 - MER117 DNA MER1_type -41 156 7 1800 115 7 25 chr1 37254099 37254378 -244939286 - AluSx SINE Alu -11 301 28 1469 230 115 20 chr1 37254556 37254948 -244938716 + LTR16A LTR ERVL 16 444 -6 308 345 147 34 chr1 37255038 37255215 -244938449 + L2 LINE L2 3076 3272 0 600 243 52 78 chr1 37255786 37256054 -244937610 - MER102a DNA MER1_type -32 298 38 1672 265 82 63 chr1 37257208 37258189 -244935475 + HAL1 LINE L1 800 1798 -709 374 325 70 61 chr1 37259184 37259596 -244934068 - L2 LINE L2 -2786 528 113 330 247 174 93 chr1 37259939 37260243 -244933421 + L1ME4a LINE L1 5500 5778 -343 2122 98 0 0 chr1 37260243 37260529 -244933135 + AluSx SINE Alu 3 288 -24 330 247 174 93 chr1 37260529 37260783 -244932881 + L1ME4a LINE L1 5778 6103 -18 223 71 48 0 chr1 37261602 37261644 -244932020 + A-rich Low_complexity Low_complexity 83 126 0 399 283 107 16 chr1 37261771 37261983 -244931681 + MIR SINE MIR 5 230 -32 482 260 0 0 chr1 37262136 37262240 -244931424 - L2 LINE L2 0 3313 3210 1925 132 0 16 chr1 37262241 37262545 -244931119 + AluSx SINE Alu 14 312 0 351 232 0 24 chr1 37263214 37263296 -244930368 - MIR SINE MIR -122 140 61 2369 97 0 0 chr1 37263600 37263911 -244929753 - AluSq SINE Alu -2 311 1 186 250 21 0 chr1 37265090 37265138 -244928526 - MIR SINE MIR -162 100 52 1582 131 46 72 chr1 37265186 37265492 -244928172 + AluSx SINE Alu 15 312 0 1360 308 68 43 chr1 37265723 37266709 -244926955 + HERV16 LTR ERVL 994 2067 -2929 2257 314 36 18 chr1 37266714 37267552 -244926112 + HERV16 LTR ERVL 2469 3321 -2443 646 315 50 17 chr1 37268130 37268323 -244925341 + MIR SINE MIR 1 186 -76 2050 106 11 0 chr1 37268323 37268605 -244925059 + AluSc SINE Alu 2 286 -23 231 88 0 0 chr1 37268605 37268639 -244925025 + (TA)n Simple_repeat Simple_repeat 2 35 0 646 315 50 17 chr1 37268639 37268685 -244924979 + MIR SINE MIR 185 249 -13 621 271 77 11 chr1 37269754 37269935 -244923729 - MIR SINE MIR 0 262 70 220 283 11 65 chr1 37270286 37270378 -244923286 - L2 LINE L2 0 3272 3186 520 279 77 40 chr1 37271359 37271581 -244922083 - MIR SINE MIR -20 242 13 451 280 99 25 chr1 37271897 37272333 -244921331 - L1ME4a LINE L1 -1 6120 5653 447 373 0 0 chr1 37273240 37273374 -244920290 - L2 LINE L2 -5 3267 3134 325 244 99 8 chr1 37273377 37273508 -244920156 - L1ME4a LINE L1 -641 5480 5338 1789 131 13 52 chr1 37274064 37274370 -244919294 - AluJb SINE Alu -18 294 1 271 240 13 0 chr1 37274411 37274486 -244919178 - L1ME4a LINE L1 -61 6060 5985 363 44 0 0 chr1 37274528 37274573 -244919091 + (CA)n Simple_repeat Simple_repeat 1 45 0 2298 93 3 0 chr1 37274908 37275220 -244918444 - AluSp SINE Alu 0 313 1 1190 173 0 18 chr1 37275553 37275773 -244917891 - AluJo SINE Alu -10 302 87 237 140 40 0 chr1 37275931 37275981 -244917683 - L1M2 LINE L1 -657 5655 5604 1060 173 11 140 chr1 37276558 37276600 -244917064 + L1MB3 LINE L1 5624 5670 -513 2285 81 0 0 chr1 37276600 37276897 -244916767 + AluY SINE Alu 1 297 -14 1060 173 11 140 chr1 37276897 37277120 -244916544 + L1MB3 LINE L1 5670 5871 -312 375 332 68 61 chr1 37277169 37277272 -244916392 - L1MEc LINE L1 -3991 2405 2304 2113 133 75 23 chr1 37277272 37277618 -244916046 - THE1B LTR MaLR 0 364 1 375 332 68 61 chr1 37277618 37277939 -244915725 - L1MEc LINE L1 -4092 2304 1978 445 323 114 68 chr1 37277947 37278771 -244914893 - HAL1b LINE L1 -515 1271 16 2044 238 174 57 chr1 37278848 37280076 -244913588 - L1MC4 LINE L1 -95 7713 6443 2767 82 8 19 chr1 37280384 37280763 -244912901 - THE1C LTR MaLR 0 375 1 1044 290 110 16 chr1 37281396 37281958 -244911706 + L1ME3A LINE L1 5337 5951 -219 188 203 186 0 chr1 37282208 37282267 -244911397 + L2 LINE L2 3200 3269 -44 1171 226 39 40 chr1 37282384 37282598 -244911066 - MLT1A1 LTR MaLR 0 365 212 2014 76 4 0 chr1 37282598 37282861 -244910803 - AluSp SINE Alu -7 306 43 1171 226 39 40 chr1 37282861 37283073 -244910591 - MLT1A1 LTR MaLR -153 212 1 581 270 115 35 chr1 37283329 37283555 -244910109 - MIR SINE MIR -6 256 13 326 233 25 75 chr1 37283898 37284018 -244909646 + MIR SINE MIR 63 176 -86 * 503 305 0 14 chr1 37284015 37284156 -244909508 - MIR3 SINE MIR -38 170 32 372 325 42 0 chr1 37284662 37284782 -244908882 - MIR SINE MIR -131 131 7 904 160 128 16 chr1 37285694 37285882 -244907782 - MER3 DNA MER1_type 0 209 1 569 326 21 16 chr1 37286942 37287135 -244906529 + MIR SINE MIR 33 226 -36 459 310 85 61 chr1 37287508 37287918 -244905746 - L2 LINE L2 -24 3248 2829 213 319 32 0 chr1 37287953 37288047 -244905617 - L2 LINE L2 -1232 2082 1986 217 286 0 0 chr1 37288409 37288458 -244905206 - MIR SINE MIR -63 145 97 469 308 226 0 chr1 37289466 37289674 -244903990 + MIR SINE MIR 8 262 0 240 265 24 24 chr1 37289721 37289804 -244903860 - MIR SINE MIR -6 256 174 2036 181 57 14 chr1 37292401 37292843 -244900821 + MLT1C LTR MaLR 7 467 0 327 273 96 82 chr1 37293558 37293778 -244899886 + L1ME4a LINE L1 5825 6047 -74 1870 171 60 0 chr1 37293786 37294120 -244899544 + MLT1A1 LTR MaLR 1 354 -11 23 33 0 0 chr1 37294197 37294227 -244899437 + AT_rich Low_complexity Low_complexity 1 30 0 352 245 50 72 chr1 37295832 37295971 -244897693 + L1ME4a LINE L1 5798 5933 -188 351 321 54 9 chr1 37296000 37296112 -244897552 - L2 LINE L2 -16 3297 3181 256 340 83 23 chr1 37296393 37296615 -244897049 - L1ME3A LINE L1 -224 5946 5704 1728 63 5 0 chr1 37296615 37296821 -244896843 - AluY SINE Alu -13 298 92 256 340 83 23 chr1 37296821 37296863 -244896801 - L1ME3A LINE L1 -466 5704 5666 30 0 0 0 chr1 37298100 37298130 -244895534 + AT_rich Low_complexity Low_complexity 1 30 0 496 259 86 35 chr1 37299420 37299617 -244894047 + MIR SINE MIR 42 248 -14 274 282 288 12 chr1 37299839 37300009 -244893655 + MIR SINE MIR 35 251 -11 2376 117 0 0 chr1 37300161 37300470 -244893194 - AluSx SINE Alu -3 309 1 236 266 0 16 chr1 37301948 37302012 -244891652 + GA-rich Low_complexity Low_complexity 2 64 0 253 232 152 20 chr1 37302695 37302794 -244890870 - MIR SINE MIR -118 144 33 362 289 33 9 chr1 37303508 37303653 -244890011 - L1ME2 LINE L1 -29 6137 5989 216 0 0 0 chr1 37304739 37304763 -244888901 + (T)n Simple_repeat Simple_repeat 1 24 0 392 324 90 54 chr1 37304963 37305241 -244888423 + L2 LINE L2 2973 3260 -12 324 237 0 0 chr1 37305414 37305473 -244888191 + L2 LINE L2 3250 3308 -5 2556 161 139 5 chr1 37306662 37307222 -244886442 + L1MB7 LINE L1 5533 6167 -17 323 313 69 44 chr1 37307492 37307652 -244886012 - L2 LINE L2 -19 3253 3090 217 352 78 7 chr1 37309903 37310045 -244883619 - MIR SINE MIR -90 172 21 248 284 0 19 chr1 37310736 37310816 -244882848 - MIR3 SINE MIR -52 156 96 347 252 184 0 chr1 37311031 37311134 -244882530 + MER94 DNA DNA 2 123 -11 305 335 73 29 chr1 37312127 37312319 -244881345 + HAL1b LINE L1 65 247 -1101 2273 123 0 0 chr1 37312319 37312621 -244881043 + AluSx SINE Alu 1 302 -10 305 335 73 29 chr1 37312621 37313005 -244880659 + HAL1b LINE L1 247 609 -739 1571 91 0 0 chr1 37313676 37313874 -244879790 - AluSg/x SINE Alu -13 297 100 455 89 0 0 chr1 37313874 37313930 -244879734 + AluS SINE Alu 24 79 -234 210 171 0 24 chr1 37313952 37313993 -244879671 + CT-rich Low_complexity Low_complexity 1 40 0 384 40 0 0 chr1 37313998 37314048 -244879616 + (TTCC)n Simple_repeat Simple_repeat 4 53 0 590 288 61 0 chr1 37314347 37314510 -244879154 - MIR SINE MIR -68 194 22 349 323 67 21 chr1 37314523 37315034 -244878630 + L1ME4a LINE L1 2659 3192 -2954 293 303 37 33 chr1 37315440 37315684 -244877980 + L1ME4a LINE L1 4300 4544 -1602 776 325 136 23 chr1 37315697 37316306 -244877358 + L1ME4a LINE L1 4563 5240 -906 753 283 103 22 chr1 37316343 37316877 -244876787 + L1ME4a LINE L1 5286 5862 -259 295 216 165 34 chr1 37316908 37317084 -244876580 + L1ME4a LINE L1 5922 6120 -1 410 315 134 0 chr1 37317928 37318055 -244875609 + L3 LINE CR1 1431 1574 -3 350 330 37 0 chr1 37318165 37318274 -244875390 + L2 LINE L2 3153 3265 -7 250 254 0 45 chr1 37322290 37322357 -244871307 - MIR SINE MIR -138 124 61 706 247 96 15 chr1 37322461 37322939 -244870725 + L2 LINE L2 2695 3298 -15 516 274 73 57 chr1 37323011 37323259 -244870405 + MLT1J LTR MaLR 220 471 -40 214 329 62 20 chr1 37323442 37323596 -244870068 + L2 LINE L2 3129 3264 -8 354 320 17 46 chr1 37323789 37323964 -244869700 - MIR SINE MIR -46 216 47 270 312 19 58 chr1 37324123 37324328 -244869336 + L1MC4a LINE L1 5712 5908 -1900 1077 158 108 5 chr1 37324348 37324551 -244869113 + MER58A DNA MER1_type 1 224 0 556 276 201 28 chr1 37324947 37325266 -244868398 + L2 LINE L2 2940 3313 0 507 281 33 0 chr1 37325725 37325846 -244867818 + L2 LINE L2 3189 3313 0 2251 118 13 3 chr1 37326002 37326308 -244867356 + AluSx SINE Alu 3 311 -1 201 39 0 0 chr1 37326315 37326341 -244867323 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 450 351 76 0 chr1 37327429 37327600 -244866064 - MIR SINE MIR -16 246 63 435 19 0 0 chr1 37327817 37327869 -244865795 + (GGAA)n Simple_repeat Simple_repeat 1 52 0 198 245 19 19 chr1 37328929 37328982 -244864682 + MIR SINE MIR 176 228 -34 182 341 112 17 chr1 37329240 37329277 -244864387 - MIR SINE MIR -10 252 220 441 0 0 0 chr1 37329277 37329326 -244864338 + (CA)n Simple_repeat Simple_repeat 2 50 0 182 341 112 17 chr1 37329326 37329467 -244864197 - MIR SINE MIR -42 220 57 640 332 51 4 chr1 37329575 37329810 -244863854 - MIR SINE MIR 0 262 17 582 221 139 0 chr1 37329822 37329980 -244863684 + MER58A DNA MER1_type 45 224 0 195 368 138 24 chr1 37330115 37330455 -244863209 - L2 LINE L2 -2571 743 365 7977 111 16 19 chr1 37331439 37332013 -244861651 + HSMAR2 DNA Mariner 22 596 -706 2500 84 0 0 chr1 37332013 37332312 -244861352 + AluY SINE Alu 1 299 -12 7977 111 16 19 chr1 37332312 37333021 -244860643 + HSMAR2 DNA Mariner 596 1301 -1 229 250 0 0 chr1 37333023 37333071 -244860593 + L1ME LINE L1 5606 5653 -509 941 172 69 39 chr1 37333196 37333294 -244860370 - MER6B DNA MER2_type -655 210 116 2189 150 0 0 chr1 37333294 37333600 -244860064 + AluSx SINE Alu 1 306 -6 941 172 69 39 chr1 37333600 37333705 -244859959 - MER6B DNA MER2_type -749 116 1 460 330 70 65 chr1 37334079 37334537 -244859127 - L2 LINE L2 -5 3267 2808 1369 206 72 9 chr1 37334631 37334986 -244858678 - L1ME2 LINE L1 -2 6162 5783 521 347 181 17 chr1 37335031 37335867 -244857797 - L2 LINE L2 -618 2696 1724 442 294 56 14 chr1 37335973 37336116 -244857548 + MIR SINE MIR 108 256 -6 593 202 40 0 chr1 37336554 37336678 -244856986 + L1MB5 LINE L1 6038 6166 -8 2188 97 0 29 chr1 37336681 37336989 -244856675 - AluY SINE Alu -12 299 1 384 347 24 0 chr1 37337012 37337136 -244856528 + MIR SINE MIR 60 186 -76 474 293 125 34 chr1 37338113 37338321 -244855343 - MIR SINE MIR -10 252 26 472 307 7 21 chr1 37339136 37339276 -244854388 + MIR SINE MIR 20 157 -105 814 254 15 50 chr1 37339283 37339503 -244854161 - MIR SINE MIR -8 254 43 281 156 0 16 chr1 37340050 37340114 -244853550 + GA-rich Low_complexity Low_complexity 2 64 0 482 274 61 24 chr1 37340146 37340310 -244853354 - MIR SINE MIR -79 183 14 590 318 45 9 chr1 37340617 37340837 -244852827 + MIR SINE MIR 29 256 -6 1837 135 0 29 chr1 37341136 37341410 -244852254 + AluJb SINE Alu 22 287 -25 222 272 11 84 chr1 37342136 37342327 -244851337 + (CACCAT)n Simple_repeat Simple_repeat 4 180 0 1650 204 0 7 chr1 37342512 37342816 -244850848 + AluJo SINE Alu 2 303 -9 230 295 13 0 chr1 37343124 37343202 -244850462 + (TGAA)n Simple_repeat Simple_repeat 4 82 0 577 170 11 0 chr1 37343750 37343844 -244849820 + MER58A DNA MER1_type 8 102 -5 243 323 21 0 chr1 37344114 37344210 -244849454 + MIR SINE MIR 117 214 -48 220 217 0 0 chr1 37344932 37344978 -244848686 - L2 LINE L2 -235 3037 2992 290 384 74 16 chr1 37346477 37346667 -244846997 + L2 LINE L2 2974 3174 -98 1222 167 16 25 chr1 37347749 37347994 -244845670 - L1MD3 LINE L1 -3 7992 7750 27 29 0 0 chr1 37348008 37348042 -244845622 + AT_rich Low_complexity Low_complexity 1 34 0 2170 74 14 21 chr1 37348451 37348770 -244844894 + AluY SINE Alu 1 317 0 229 295 18 54 chr1 37348788 37348900 -244844764 - L1ME LINE L1 -531 5590 5483 300 211 131 106 chr1 37348991 37349266 -244844398 - L1ME LINE L1 -743 5403 5122 1042 211 173 11 chr1 37349399 37349659 -244844005 - AluSp SINE Alu 0 303 2 364 284 71 46 chr1 37350148 37350472 -244843192 - L1ME LINE L1 -1481 4665 4334 225 0 0 0 chr1 37350474 37350499 -244843165 + (TG)n Simple_repeat Simple_repeat 2 26 0 264 100 0 0 chr1 37351130 37351170 -244842494 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 328 259 54 36 chr1 37351247 37351413 -244842251 - MIR SINE MIR -37 225 57 269 246 58 0 chr1 37351937 37352006 -244841658 - L2 LINE L2 -222 3091 3019 378 279 50 19 chr1 37352176 37352337 -244841327 - L2 LINE L2 -534 2780 2615 313 295 120 6 chr1 37352947 37353130 -244840534 - MIR SINE MIR -44 218 15 1628 211 56 44 chr1 37353561 37354011 -244839653 + MLT1C LTR MaLR 7 461 -6 237 341 0 22 chr1 37354187 37354278 -244839386 + L2 LINE L2 3180 3268 -4 213 303 0 13 chr1 37354776 37354852 -244838812 - L2 LINE L2 -190 3082 3008 189 0 0 0 chr1 37355831 37355852 -244837812 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 45118 37 5 0 chr1 37355928 37362049 -244831615 + L1PA4 LINE L1 1 6152 -3 1118 132 53 5 chr1 37362056 37362245 -244831419 + MSTB1 LTR MaLR 188 385 -47 220 224 0 0 chr1 37362245 37362294 -244831370 + A-rich Low_complexity Low_complexity 1 49 0 303 323 91 5 chr1 37363082 37363128 -244830536 + MIR SINE MIR 21 62 -200 2371 104 0 0 chr1 37363128 37363427 -244830237 - AluSc SINE Alu -10 299 1 303 323 91 5 chr1 37363427 37363578 -244830086 + MIR SINE MIR 62 235 -27 272 277 102 6 chr1 37363651 37363828 -244829836 - L1M4 LINE L1 -3582 2564 2371 1844 73 0 17 chr1 37363841 37364074 -244829590 - AluY SINE Alu -5 306 78 225 0 0 0 chr1 37364076 37364101 -244829563 + (T)n Simple_repeat Simple_repeat 1 25 0 410 214 0 29 chr1 37364706 37364809 -244828855 + MLT1J2 LTR MaLR 349 448 -2 1916 159 7 0 chr1 37364847 37365142 -244828522 - AluSx SINE Alu -15 297 1 1667 218 77 51 chr1 37365534 37365602 -244828062 - MLT1D LTR MaLR 0 505 440 2176 130 0 0 chr1 37365602 37365910 -244827754 + AluSx SINE Alu 1 308 -4 1667 218 77 51 chr1 37365910 37366333 -244827331 - MLT1D LTR MaLR -65 440 1 524 259 171 16 chr1 37369030 37369281 -244824383 + MLT1J LTR MaLR 222 511 0 219 324 65 28 chr1 37369298 37369406 -244824258 + L2 LINE L2 3158 3269 -3 290 242 84 73 chr1 37369698 37369876 -244823788 + L2 LINE L2 3129 3308 -5 284 309 59 29 chr1 37369891 37370027 -244823637 + MIR3 SINE MIR 7 146 -62 180 0 0 0 chr1 37370160 37370180 -244823484 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 494 269 151 5 chr1 37370884 37371070 -244822594 - MIR SINE MIR -35 227 15 349 261 87 40 chr1 37371875 37372230 -244821434 + L1MC4a LINE L1 5475 5824 -297 23 54 0 0 chr1 37372417 37372454 -244821210 + AT_rich Low_complexity Low_complexity 1 37 0 1912 135 31 24 chr1 37372462 37372751 -244820913 + AluSx SINE Alu 1 291 -21 368 273 8 0 chr1 37372932 37373064 -244820600 + GA-rich Low_complexity Low_complexity 1 133 0 229 341 14 73 chr1 37373626 37373846 -244819818 + L1MC4 LINE L1 7800 8006 -36 182 244 19 115 chr1 37374159 37374315 -244819349 + L2 LINE L2 2918 3058 -214 318 309 67 66 chr1 37374677 37375275 -244818389 - L2 LINE L2 0 3272 2678 326 307 52 18 chr1 37375911 37376037 -244817627 + MIR SINE MIR 37 164 -63 262 282 54 0 chr1 37376247 37376352 -244817312 - MIR SINE MIR -62 146 78 491 272 115 37 chr1 37376382 37376625 -244817039 - MIR SINE MIR 0 262 1 4814 145 35 27 chr1 37377131 37377695 -244815969 + L1MB7 LINE L1 5254 5812 -372 2153 119 0 3 chr1 37377695 37378010 -244815654 + AluSp SINE Alu 1 314 0 4814 145 35 27 chr1 37378010 37378282 -244815382 + L1MB7 LINE L1 5812 6101 -83 2043 141 37 45 chr1 37378282 37378658 -244815006 + THE1C LTR MaLR 3 375 0 4814 145 35 27 chr1 37378658 37378683 -244814981 + L1MB7 LINE L1 6101 6124 -60 393 305 94 0 chr1 37379900 37380028 -244813636 + L2 LINE L2 3133 3272 0 228 200 0 0 chr1 37381208 37381253 -244812411 + L2 LINE L2 3191 3235 -37 257 343 118 43 chr1 37381480 37381760 -244811904 + L2 LINE L2 2908 3208 -64 183 237 0 0 chr1 37382243 37382281 -244811383 - MIR SINE MIR -62 146 109 316 323 39 19 chr1 37383320 37383475 -244810189 - MIR SINE MIR -52 210 53 1888 165 47 33 chr1 37383601 37383930 -244809734 - L1MB8 LINE L1 -11 6167 5829 2391 84 7 0 chr1 37383930 37384226 -244809438 - AluSg SINE Alu -12 298 1 1888 165 47 33 chr1 37384226 37384320 -244809344 - L1MB8 LINE L1 -349 5829 5738 1434 185 50 57 chr1 37385815 37386274 -244807390 + L1MC5 LINE L1 7207 7662 -299 338 240 51 61 chr1 37386428 37386624 -244807040 - L1ME4a LINE L1 -123 5998 5805 198 182 30 61 chr1 37386676 37386742 -244806922 + L2 LINE L2 3209 3272 0 498 305 44 49 chr1 37386913 37387303 -244806361 - L1ME4a LINE L1 -1296 4850 4463 840 285 50 32 chr1 37387527 37387921 -244805743 - L1MB8 LINE L1 -450 5720 5327 546 272 32 43 chr1 37388178 37388524 -244805140 - L1MB8 LINE L1 -1941 4205 3864 461 100 29 0 chr1 37388529 37388599 -244805065 + MER116 DNA Mariner 1 72 -8 1573 105 4 42 chr1 37388677 37388916 -244804748 - AluY SINE Alu -8 303 74 1308 197 55 36 chr1 37389013 37389393 -244804271 - L1MA7 LINE L1 0 6334 5920 255 255 129 61 chr1 37389361 37389655 -244804009 - L1MB8 LINE L1 -2482 3664 3351 * 432 141 0 0 chr1 37389658 37389722 -244803942 - Alu SINE Alu -15 297 234 326 287 52 12 chr1 37389726 37389977 -244803687 - L1MB8 LINE L1 -2794 3352 3092 21 0 0 0 chr1 37390169 37390190 -244803474 + AT_rich Low_complexity Low_complexity 1 21 0 740 173 7 0 chr1 37390684 37390834 -244802830 + (TG)n Simple_repeat Simple_repeat 1 151 0 371 145 14 0 chr1 37391585 37391654 -244802010 + (CA)n Simple_repeat Simple_repeat 2 71 0 1307 147 0 0 chr1 37392494 37392736 -244800928 - AluJb SINE Alu 0 328 87 253 291 37 75 chr1 37393633 37393767 -244799897 - MIR SINE MIR -19 243 115 243 298 164 0 chr1 37394000 37394104 -244799560 + L2 LINE L2 3122 3242 -30 276 30 0 0 chr1 37394320 37394353 -244799311 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 237 305 61 79 chr1 37395271 37395435 -244798229 + MIR SINE MIR 91 251 -11 301 372 34 7 chr1 37397000 37397148 -244796516 - MIR SINE MIR -89 173 22 878 250 216 18 chr1 37397579 37397967 -244795697 + L2 LINE L2 2830 3294 -19 371 293 28 0 chr1 37398274 37398380 -244795284 - MIR SINE MIR -83 179 71 220 235 0 143 chr1 37400728 37400826 -244792838 - L2 LINE L2 0 3313 3230 266 319 43 43 chr1 37400874 37401037 -244792627 - L2 LINE L2 -177 3095 2933 900 245 0 11 chr1 37401919 37402103 -244791561 - MIR SINE MIR -68 194 13 499 213 142 11 chr1 37402482 37402641 -244791023 + MER5A DNA MER1_type 6 188 -1 302 208 30 89 chr1 37402876 37402977 -244790687 - L2 LINE L2 -24 3248 3154 425 302 60 55 chr1 37403552 37403787 -244789877 + MIR SINE MIR 13 248 -14 351 247 83 156 chr1 37404087 37404581 -244789083 - L2 LINE L2 -1 3271 2814 180 0 0 0 chr1 37404596 37404616 -244789048 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 2073 100 3 10 chr1 37404620 37404911 -244788753 - AluSp SINE Alu -24 289 1 310 324 69 61 chr1 37405029 37405276 -244788388 + L2 LINE L2 2978 3226 -46 699 293 89 17 chr1 37405798 37406156 -244787508 - L1ME4a LINE L1 -123 5998 5615 483 205 0 0 chr1 37406162 37406245 -244787419 + MER2 DNA MER2_type 1 83 -262 471 318 96 60 chr1 37406260 37407122 -244786542 - L1ME4a LINE L1 -770 5376 4699 274 349 23 23 chr1 37407152 37407281 -244786383 + MER5B DNA MER1_type 1 129 -49 289 260 94 0 chr1 37407321 37407417 -244786247 + L2 LINE L2 3199 3303 -10 24 32 0 0 chr1 37407425 37407456 -244786208 + AT_rich Low_complexity Low_complexity 1 31 0 366 277 111 92 chr1 37407583 37407908 -244785756 + L3 LINE CR1 1241 1571 -6 822 152 116 61 chr1 37409749 37409947 -244783717 + MER58C DNA MER1_type 2 210 -5 467 290 0 23 chr1 37411026 37411157 -244782507 + L2 LINE L2 3145 3272 0 900 272 76 46 chr1 37411366 37411760 -244781904 + MLT1I LTR MaLR 4 409 0 495 233 159 37 chr1 37411860 37412023 -244781641 - MIR SINE MIR -35 227 45 516 278 156 10 chr1 37412354 37412559 -244781105 - MIR SINE MIR 0 262 28 279 231 118 142 chr1 37412595 37412764 -244780900 - MIR SINE MIR 0 262 98 29 0 0 0 chr1 37413363 37413392 -244780272 + AT_rich Low_complexity Low_complexity 1 29 0 1617 32 0 0 chr1 37413392 37413577 -244780087 - L1PA3 LINE L1 -3 6152 5968 2815 239 118 48 chr1 37413599 37415972 -244777692 + L1MC5 LINE L1 5364 7913 -48 230 279 66 0 chr1 37416125 37416186 -244777478 + L2 LINE L2 3248 3312 -1 1863 203 29 13 chr1 37416214 37416598 -244777066 + MLT1B LTR MaLR 1 390 0 783 236 39 81 chr1 37416718 37416976 -244776688 - MIR SINE MIR -6 256 10 789 261 77 31 chr1 37417263 37417435 -244776229 + MIR SINE MIR 16 202 -60 1917 136 55 33 chr1 37417435 37417802 -244775862 + THE1C LTR MaLR 1 375 0 789 261 77 31 chr1 37417802 37417851 -244775813 + MIR SINE MIR 202 247 -15 245 375 62 0 chr1 37417851 37417963 -244775701 + MIR SINE MIR 74 192 -70 654 164 18 0 chr1 37418265 37418375 -244775289 - FRAM SINE Alu -11 165 54 2209 119 0 0 chr1 37418412 37418722 -244774942 + AluSg SINE Alu 1 310 0 307 259 181 24 chr1 37418763 37418929 -244774735 - L1MDa LINE L1 -3900 2640 2449 512 277 126 13 chr1 37419090 37419249 -244774415 + MIR SINE MIR 37 213 -49 582 162 197 0 chr1 37419439 37419556 -244774108 + MER58B DNA MER1_type 202 341 0 2051 63 8 0 chr1 37420146 37420401 -244773263 + AluY SINE Alu 41 297 -14 223 340 60 38 chr1 37420950 37421135 -244772529 - MIR SINE MIR -54 208 20 673 246 126 9 chr1 37421346 37421561 -244772103 - MIR SINE MIR -2 260 21 306 322 87 0 chr1 37421642 37421757 -244771907 - L2 LINE L2 -4 3309 3185 268 173 0 39 chr1 37422228 37422280 -244771384 - L2 LINE L2 0 3313 3264 472 244 57 8 chr1 37423474 37423597 -244770067 - MIR SINE MIR -30 232 104 357 323 45 81 chr1 37423825 37424075 -244769589 + MIR SINE MIR 12 256 -6 322 333 0 0 chr1 37424656 37424752 -244768912 + (CA)n Simple_repeat Simple_repeat 1 96 0 258 356 82 20 chr1 37424823 37424969 -244768695 + MIR SINE MIR 107 261 -1 531 270 72 22 chr1 37424989 37425211 -244768453 + L3 LINE CR1 1272 1504 -73 319 280 11 32 chr1 37425276 37425369 -244768295 - MER5A DNA MER1_type -22 167 77 481 184 72 59 chr1 37425371 37425523 -244768141 + HAL1b LINE L1 1140 1293 -55 264 366 24 8 chr1 37425828 37425951 -244767713 - L2 LINE L2 0 3272 3148 496 178 72 59 chr1 37427780 37427932 -244765732 + HAL1b LINE L1 1140 1293 -55 496 337 99 39 chr1 37428467 37429003 -244764661 + L1ME LINE L1 5263 5817 -304 786 240 82 10 chr1 37429712 37429944 -244763720 - MIR SINE MIR -15 247 3 544 250 43 75 chr1 37430472 37430660 -244763004 + L2 LINE L2 3132 3313 0 446 310 99 81 chr1 37430903 37431187 -244762477 + HAL1b LINE L1 513 801 -547 472 204 19 19 chr1 37431690 37431793 -244761871 - MER5B DNA MER1_type -75 103 1 784 300 101 36 chr1 37432626 37432973 -244760691 + L1MC/D LINE L1 2570 2968 -3178 2387 55 6 6 chr1 37432973 37433284 -244760380 - AluY SINE Alu 0 311 1 784 300 101 36 chr1 37433284 37433489 -244760175 + L1MC/D LINE L1 2968 3158 -2988 262 275 93 39 chr1 37433938 37434120 -244759544 + L1MC/D LINE L1 4440 4631 -1515 736 292 30 17 chr1 37434195 37434428 -244759236 - MIR SINE MIR -24 238 3 674 320 100 18 chr1 37434473 37435083 -244758581 + L1MC/D LINE L1 4735 5444 -743 784 288 43 60 chr1 37435123 37435524 -244758140 - L2 LINE L2 -1211 2103 1697 1907 116 11 25 chr1 37435524 37435809 -244757855 - AluSc SINE Alu -28 281 1 784 288 43 60 chr1 37435809 37435821 -244757843 - L2 LINE L2 -1617 1697 1686 180 0 0 0 chr1 37435821 37435841 -244757823 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 784 288 43 60 chr1 37435841 37435978 -244757686 - L2 LINE L2 -1628 1686 1561 431 258 72 45 chr1 37435978 37436069 -244757595 - MER112 DNA MER1_type -1 259 172 2391 151 57 5 chr1 37436069 37436472 -244757192 + MSTB LTR MaLR 3 426 0 8323 179 74 3 chr1 37436472 37438014 -244755650 + MSTB-int LTR MaLR 1 1651 0 2538 163 9 21 chr1 37438014 37438443 -244755221 + MSTB LTR MaLR 1 424 -2 431 258 72 45 chr1 37438443 37438570 -244755094 - MER112 DNA MER1_type -87 173 33 383 333 105 14 chr1 37438642 37438993 -244754671 - L2 LINE L2 -1763 1551 1169 887 156 12 117 chr1 37439519 37439775 -244753889 - AluJo SINE Alu -13 299 71 362 341 176 13 chr1 37439873 37440175 -244753489 + L2 LINE L2 1965 2315 -999 532 338 49 21 chr1 37440295 37440579 -244753085 - L2 LINE L2 -203 3110 2819 4873 30 0 0 chr1 37440634 37441197 -244752467 + L1PA3 LINE L1 5592 6154 -1 238 214 0 36 chr1 37441228 37441284 -244752380 + L2 LINE L2 2335 2388 -926 804 359 101 24 chr1 37441434 37442157 -244751507 + L2 LINE L2 2217 2995 -277 340 262 33 49 chr1 37442411 37442533 -244751131 - L2 LINE L2 -66 3247 3128 351 269 49 91 chr1 37442590 37442939 -244750725 + MLT1I LTR MaLR 73 450 0 343 297 135 26 chr1 37442944 37443136 -244750528 - L2 LINE L2 -211 3102 2890 2576 74 0 0 chr1 37443195 37443506 -244750158 - AluY SINE Alu 0 311 1 607 219 47 0 chr1 37443660 37443788 -244749876 + MER94 DNA DNA 1 134 0 265 306 41 96 chr1 37444425 37444644 -244749020 + MIR SINE MIR 50 256 -6 387 327 26 18 chr1 37446653 37446766 -244746898 + L2 LINE L2 3133 3246 -26 235 346 50 28 chr1 37447189 37447371 -244746293 - MER5A DNA MER1_type -1 188 3 793 327 75 69 chr1 37448862 37449703 -244743961 + L1M4 LINE L1 4411 5284 -862 207 200 0 0 chr1 37450058 37450098 -244743566 + (TG)n Simple_repeat Simple_repeat 2 41 0 328 257 148 10 chr1 37450246 37450347 -244743317 + L2 LINE L2 3199 3313 0 225 350 114 0 chr1 37450431 37450554 -244743110 + L2 LINE L2 3136 3272 0 302 244 62 85 chr1 37450567 37450743 -244742921 + L1ME LINE L1 4366 4537 -1609 363 350 25 20 chr1 37450780 37450980 -244742684 + L1ME LINE L1 5533 5733 -388 182 247 52 52 chr1 37451727 37451804 -244741860 + L3 LINE CR1 676 752 -825 191 315 117 25 chr1 37451848 37452010 -244741654 + MIR SINE MIR 52 228 -34 1004 181 73 15 chr1 37452135 37452340 -244741324 + MER20 DNA MER1_type 2 218 -1 360 64 0 0 chr1 37452408 37452455 -244741209 + (TG)n Simple_repeat Simple_repeat 2 48 0 187 188 0 0 chr1 37454248 37454280 -244739384 + L2 LINE L2 3143 3174 -98 196 137 39 0 chr1 37457514 37457565 -244736099 + GA-rich Low_complexity Low_complexity 1 53 0 252 0 0 0 chr1 37457983 37458011 -244735653 + (TG)n Simple_repeat Simple_repeat 1 28 0 267 335 210 17 chr1 37458744 37458920 -244734744 - L2 LINE L2 -13 3259 3050 1129 213 38 64 chr1 37458921 37459344 -244734320 + MER96B DNA MER1_type? 6 417 0 351 282 217 53 chr1 37459418 37460916 -244732748 - L2 LINE L2 -853 2461 718 244 308 47 28 chr1 37461894 37462001 -244731663 + L2 LINE L2 2946 3054 -218 850 115 0 0 chr1 37462055 37462168 -244731496 - FRAM SINE Alu -10 166 54 279 277 213 11 chr1 37462223 37462317 -244731347 - L2 LINE L2 0 3313 3201 427 197 38 76 chr1 37462365 37462497 -244731167 + L2 LINE L2 3182 3308 -5 199 351 43 32 chr1 37462501 37462595 -244731069 - L2 LINE L2 -39 3233 3139 299 320 134 23 chr1 37462704 37463048 -244730616 + L2 LINE L2 2425 2806 -508 648 228 129 6 chr1 37463136 37463307 -244730357 + MIR SINE MIR 3 194 -68 297 305 72 87 chr1 37463434 37463768 -244729896 + L2 LINE L2 2938 3266 -6 297 282 55 18 chr1 37463971 37464081 -244729583 + L2 LINE L2 3151 3264 -8 538 307 118 49 chr1 37465082 37465369 -244728295 + L2 LINE L2 2964 3270 -2 333 292 96 28 chr1 37466221 37466419 -244727245 - MIR SINE MIR -17 245 30 217 274 14 27 chr1 37466550 37466623 -244727041 - L2 LINE L2 -5 3267 3196 265 365 125 24 chr1 37466670 37467095 -244726569 - L2 LINE L2 -501 2813 2346 1001 224 45 72 chr1 37467098 37467284 -244726380 + MLT1B LTR MaLR 1 176 -214 360 43 0 0 chr1 37467284 37467330 -244726334 + (TC)n Simple_repeat Simple_repeat 1 46 0 1001 224 45 72 chr1 37467330 37467474 -244726190 + MLT1B LTR MaLR 176 322 -68 461 216 29 0 chr1 37467596 37467698 -244725966 + MLT1C LTR MaLR 1 105 -362 523 267 128 31 chr1 37468643 37468838 -244724826 - MIR SINE MIR -29 233 20 233 377 0 0 chr1 37469012 37469089 -244724575 + L2 LINE L2 3191 3267 -5 557 192 8 56 chr1 37469256 37469381 -244724283 + MIR SINE MIR 25 143 -119 398 277 32 19 chr1 37469682 37469837 -244723827 - L3 LINE CR1 -273 1304 1148 180 376 45 25 chr1 37469929 37470086 -244723578 - L3 LINE CR1 -722 855 696 213 217 43 43 chr1 37470253 37470322 -244723342 - MIR3 SINE MIR -129 79 11 511 255 76 13 chr1 37470436 37470593 -244723071 - MIR SINE MIR -56 206 40 1588 206 73 5 chr1 37470737 37471136 -244722528 + MLT1C LTR MaLR 1 426 -41 197 229 86 105 chr1 37471763 37471868 -244721796 - MIR SINE MIR -43 219 117 259 300 129 9 chr1 37471940 37472080 -244721584 - MIR SINE MIR -51 211 43 2440 96 0 0 chr1 37472080 37472382 -244721282 + AluSx SINE Alu 1 302 -10 259 300 129 9 chr1 37472382 37472412 -244721252 - MIR SINE MIR -219 43 18 331 264 114 70 chr1 37473187 37473388 -244720276 - MIR SINE MIR -21 241 32 435 259 30 30 chr1 37473765 37473900 -244719764 + MIR3 SINE MIR 67 201 -7 1565 207 57 94 chr1 37474048 37474524 -244719140 + MLT2B1 LTR ERVL 1 456 -64 860 52 52 17 chr1 37474524 37474698 -244718966 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 1565 207 57 94 chr1 37474698 37474761 -244718903 + MLT2B1 LTR ERVL 456 520 0 311 248 227 17 chr1 37475071 37475247 -244718417 + MIR SINE MIR 36 255 -7 1984 153 0 7 chr1 37475342 37475642 -244718022 - AluJb SINE Alu -14 298 1 410 283 115 53 chr1 37476897 37477141 -244716523 - L2 LINE L2 -9 3263 3005 236 302 44 57 chr1 37478176 37478335 -244715329 - L2 LINE L2 -213 3100 2944 236 341 67 24 chr1 37478389 37478553 -244715111 - L2 LINE L2 -447 2867 2697 233 314 91 51 chr1 37479712 37479887 -244713777 + L2 LINE L2 3074 3255 -17 1153 238 5 0 chr1 37479980 37480203 -244713461 - MER58A DNA MER1_type 0 224 1 229 273 18 0 chr1 37480275 37480330 -244713334 - MIR SINE MIR -19 243 188 4980 60 8 3 chr1 37480344 37481464 -244712200 + MER11A LTR ERVK 1 1266 0 551 245 66 7 chr1 37481472 37481623 -244712041 - MIR SINE MIR -101 161 2 253 263 0 0 chr1 37482351 37482408 -244711256 - L2 LINE L2 -6 3266 3210 708 210 47 70 chr1 37483144 37483358 -244710306 + MER58C DNA MER1_type 1 209 -6 526 282 59 23 chr1 37483701 37483921 -244709743 + MLT1J LTR MaLR 233 460 -51 185 302 186 0 chr1 37484532 37484618 -244709046 - L2 LINE L2 0 3272 3171 338 221 13 13 chr1 37484946 37485023 -244708641 + L2 LINE L2 3196 3272 0 262 231 39 0 chr1 37485201 37485279 -244708385 + CT-rich Low_complexity Low_complexity 2 82 0 575 291 192 8 chr1 37485581 37485945 -244707719 - L2 LINE L2 -14 3258 2828 387 277 80 15 chr1 37486001 37486138 -244707526 + MER5A DNA MER1_type 38 183 -6 343 299 68 8 chr1 37487566 37487683 -244705981 - L2 LINE L2 0 3272 3149 656 324 23 27 chr1 37487989 37488251 -244705413 + MIR SINE MIR 2 262 0 330 311 201 5 chr1 37488352 37488561 -244705103 + L2 LINE L2 2844 3093 -179 198 0 0 0 chr1 37489546 37489568 -244704096 + (TAAAAA)n Simple_repeat Simple_repeat 3 24 0 1314 220 52 57 chr1 37489589 37489976 -244703688 + MLT1B LTR MaLR 1 385 -5 1324 252 126 53 chr1 37490284 37491318 -244702346 + L1MEd LINE L1 419 1542 -4587 826 102 40 0 chr1 37491318 37491457 -244702207 + L1PA16 LINE L1 6011 6157 -9 1324 252 126 53 chr1 37491457 37491612 -244702052 + L1MEd LINE L1 1542 1684 -4445 3651 305 81 29 chr1 37491845 37494252 -244699412 + L1MEd LINE L1 2119 4650 -1479 329 204 107 10 chr1 37494302 37494405 -244699259 + L1ME3A LINE L1 5824 5936 -234 321 235 165 9 chr1 37496191 37496306 -244697358 - L2 LINE L2 -2 3270 3138 415 301 60 44 chr1 37496672 37496855 -244696809 + MIR SINE MIR 59 244 -18 970 360 41 17 chr1 37498117 37498701 -244694963 + L2 LINE L2 926 1523 -1791 428 277 66 24 chr1 37499267 37499433 -244694231 + L2 LINE L2 1911 2083 -1231 360 185 25 12 chr1 37499466 37499547 -244694117 + L1MC4 LINE L1 7961 8042 0 237 338 129 0 chr1 37499655 37499794 -244693870 + MIR SINE MIR 27 183 -79 195 129 0 0 chr1 37499952 37499983 -244693681 + (GGAGA)n Simple_repeat Simple_repeat 1 31 0 337 303 62 16 chr1 37500120 37500254 -244693410 - MIR SINE MIR -67 141 14 202 217 0 67 chr1 37500875 37500935 -244692729 - L2 LINE L2 0 3272 3217 274 301 26 26 chr1 37501483 37501596 -244692068 - MIR SINE MIR -68 140 28 432 297 40 7 chr1 37501760 37501908 -244691756 - MIR SINE MIR -59 203 51 421 209 181 0 chr1 37502358 37502463 -244691201 - L2 LINE L2 -2 3311 3188 217 246 51 94 chr1 37502487 37502625 -244691039 - MIR SINE MIR -40 222 91 376 316 7 43 chr1 37503513 37503652 -244690012 + L2 LINE L2 3139 3272 0 207 0 0 0 chr1 37504633 37504656 -244689008 + (A)n Simple_repeat Simple_repeat 1 23 0 335 325 50 17 chr1 37505707 37505827 -244687837 - L2 LINE L2 -11 3302 3179 235 247 0 82 chr1 37508092 37508177 -244685487 - MIR SINE MIR -69 193 116 348 321 0 43 chr1 37508750 37508937 -244684727 + GA-rich Low_complexity Low_complexity 2 180 0 244 262 16 0 chr1 37509542 37509603 -244684061 + GA-rich Low_complexity Low_complexity 1 62 0 727 245 91 25 chr1 37510290 37510576 -244683088 + MLT1H LTR MaLR 1 305 -244 1420 265 137 6 chr1 37511071 37511776 -244681888 + L2 LINE L2 2459 3261 -52 332 269 62 69 chr1 37511775 37511905 -244681759 - MIR SINE MIR -65 197 69 * 970 360 41 17 chr1 37562416 37563000 -244630664 + L2 LINE L2 926 1523 -1791 428 277 66 24 chr1 37563566 37563732 -244629932 + L2 LINE L2 1911 2083 -1231 360 185 25 12 chr1 37563765 37563846 -244629818 + L1MC4 LINE L1 7961 8042 0 237 338 129 0 chr1 37563954 37564093 -244629571 + MIR SINE MIR 27 183 -79 195 129 0 0 chr1 37564251 37564282 -244629382 + (GGAGA)n Simple_repeat Simple_repeat 1 31 0 337 303 62 16 chr1 37564419 37564553 -244629111 - MIR SINE MIR -67 141 14 202 217 0 67 chr1 37565174 37565234 -244628430 - L2 LINE L2 0 3272 3217 274 301 26 26 chr1 37565782 37565895 -244627769 - MIR SINE MIR -68 140 28 432 297 40 7 chr1 37566059 37566207 -244627457 - MIR SINE MIR -59 203 51 421 209 181 0 chr1 37566656 37566761 -244626903 - L2 LINE L2 -2 3311 3188 217 246 51 94 chr1 37566785 37566923 -244626741 - MIR SINE MIR -40 222 91 376 316 7 43 chr1 37567811 37567950 -244625714 + L2 LINE L2 3139 3272 0 207 0 0 0 chr1 37568931 37568954 -244624710 + (A)n Simple_repeat Simple_repeat 1 23 0 335 325 50 17 chr1 37570005 37570125 -244623539 - L2 LINE L2 -11 3302 3179 235 247 0 82 chr1 37572370 37572455 -244621209 - MIR SINE MIR -69 193 116 348 321 0 43 chr1 37573028 37573215 -244620449 + GA-rich Low_complexity Low_complexity 2 180 0 244 262 16 0 chr1 37573820 37573881 -244619783 + GA-rich Low_complexity Low_complexity 1 62 0 727 245 91 25 chr1 37574568 37574854 -244618810 + MLT1H LTR MaLR 1 305 -244 1447 265 138 5 chr1 37575349 37576053 -244617611 + L2 LINE L2 2459 3261 -52 332 269 62 69 chr1 37576052 37576182 -244617482 - MIR SINE MIR -65 197 69 * 987 48 8 0 chr1 37577760 37577886 -244615778 - L1PA4 LINE L1 -3 6152 6026 44934 38 2 1 chr1 37577886 37584071 -244609593 + L1PA3 LINE L1 4 6195 0 9875 92 1 0 chr1 37584089 37585377 -244608287 - L1P LINE L1 -4857 1289 1 377 286 41 58 chr1 37588646 37588817 -244604847 + L2 LINE L2 2924 3091 -181 185 316 63 0 chr1 37588887 37588966 -244604698 + L2 LINE L2 3189 3272 0 340 268 184 84 chr1 37590321 37590809 -244602855 + L2 LINE L2 2243 2779 -535 1640 174 26 13 chr1 37590910 37591221 -244602443 - MER58B DNA MER1_type -4 337 23 190 283 19 0 chr1 37591614 37591667 -244601997 - MIR SINE MIR -123 85 32 408 219 0 0 chr1 37591920 37591993 -244601671 + LTR33 LTR ERVL 21 93 -428 667 267 83 64 chr1 37592067 37592475 -244601189 + LTR33 LTR ERVL 102 517 -4 410 168 19 75 chr1 37592566 37592673 -244600991 + MER20 DNA MER1_type 2 102 -117 772 164 0 0 chr1 37592709 37592831 -244600833 + MER20 DNA MER1_type 98 219 0 682 275 43 19 chr1 37592944 37593155 -244600509 + MIR SINE MIR 1 216 -46 428 305 133 26 chr1 37593270 37593503 -244600161 - MER112 DNA MER1_type 0 260 3 485 270 46 63 chr1 37593572 37593746 -244599918 + MIR SINE MIR 56 226 -36 366 264 183 30 chr1 37594516 37594713 -244598951 - L3 LINE CR1 -125 1452 1226 565 338 140 0 chr1 37594777 37595005 -244598659 + MIR SINE MIR 2 261 -1 354 251 274 28 chr1 37595796 37595975 -244597689 + MIR SINE MIR 29 251 -11 547 294 43 15 chr1 37596067 37596286 -244597378 + MIR SINE MIR 18 247 -15 893 288 92 28 chr1 37596512 37596935 -244596729 - LTR33 LTR ERVL -71 450 1 938 238 45 42 chr1 37597678 37598010 -244595654 + L1ME1 LINE L1 5801 6133 -33 664 183 0 0 chr1 37598012 37598127 -244595537 + FLAM_C SINE Alu 1 115 -28 683 267 87 28 chr1 37598254 37598554 -244595110 + L2 LINE L2 2735 3051 -262 552 246 18 0 chr1 37598725 37598839 -244594825 - MIR SINE MIR -144 118 3 530 363 60 33 chr1 37600764 37601128 -244592536 + L2 LINE L2 2864 3237 -35 815 216 106 34 chr1 37601148 37601356 -244592308 + MER58A DNA MER1_type 1 223 -1 303 180 0 0 chr1 37601614 37601664 -244592000 - L2 LINE L2 -2 3311 3262 304 399 7 13 chr1 37602267 37602420 -244591244 - L3 LINE CR1 -5 1572 1421 376 294 173 40 chr1 37602421 37602693 -244590971 + L2 LINE L2 2948 3255 -17 269 132 19 19 chr1 37603651 37603704 -244589960 + MLT1K LTR MaLR 193 245 -343 610 309 132 5 chr1 37604297 37604517 -244589147 + MIR SINE MIR 12 259 -3 295 325 6 66 chr1 37605162 37605328 -244588336 + MIR3 SINE MIR 46 201 -7 838 228 70 23 chr1 37605418 37605633 -244588031 + MIR SINE MIR 23 247 -15 355 272 95 78 chr1 37605795 37606148 -244587516 - MLT1K LTR MaLR -91 497 67 409 263 50 10 chr1 37606791 37606890 -244586774 + MIR SINE MIR 12 114 -148 306 284 0 18 chr1 37607196 37607305 -244586359 + (TGAG)n Simple_repeat Simple_repeat 1 107 0 2390 189 18 39 chr1 37607470 37607979 -244585685 - MLT1D LTR MaLR 0 505 8 232 286 43 14 chr1 37608117 37608187 -244585477 - MER5B DNA MER1_type -105 73 2 190 216 0 0 chr1 37608279 37608316 -244585348 - MER5B DNA MER1_type -7 171 135 2600 209 21 12 chr1 37608317 37608890 -244584774 - L1MD3 LINE L1 -14 7981 7404 344 140 53 0 chr1 37608890 37608947 -244584717 - MLT1F1 LTR MaLR -442 125 66 426 240 10 31 chr1 37609045 37609141 -244584523 - MIR SINE MIR -162 100 7 313 191 71 121 chr1 37609205 37609346 -244584318 - MER112 DNA MER1_type -6 254 121 452 247 19 82 chr1 37609359 37609517 -244584147 + MIR SINE MIR 105 252 -10 277 264 14 14 chr1 37609520 37609592 -244584072 - MER112 DNA MER1_type -181 79 8 907 220 58 11 chr1 37609616 37609807 -244583857 + MER58A DNA MER1_type 2 201 -23 809 254 95 42 chr1 37610015 37610472 -244583192 - LTR33 LTR ERVL -7 514 1 477 0 0 0 chr1 37610709 37610762 -244582902 + (TG)n Simple_repeat Simple_repeat 2 54 0 186 362 8 39 chr1 37611385 37611512 -244582152 + MIR SINE MIR 25 147 -61 559 154 8 16 chr1 37613252 37613375 -244580289 + GA-rich Low_complexity Low_complexity 2 123 0 361 248 37 0 chr1 37613884 37613993 -244579671 + MLT1K LTR MaLR 153 265 -323 218 344 0 0 chr1 37614892 37614956 -244578708 + L2 LINE L2 1361 1424 -1890 444 252 86 7 chr1 37615183 37615322 -244578342 + MIR SINE MIR 88 237 -25 2170 199 53 91 chr1 37615325 37615933 -244577731 + MLT1E LTR MaLR 1 585 -8 928 258 92 65 chr1 37616681 37616821 -244576843 - L2 LINE L2 0 3313 3178 2070 111 0 0 chr1 37616821 37617132 -244576532 + AluSg SINE Alu 1 311 0 928 258 92 65 chr1 37617132 37617454 -244576210 - L2 LINE L2 -135 3178 2836 206 328 0 31 chr1 37617502 37617566 -244576098 + L3 LINE CR1 588 649 -928 998 158 23 6 chr1 37617869 37618040 -244575624 - MER5A DNA MER1_type 0 189 16 1134 200 226 84 chr1 37619056 37619537 -244574127 + MLT1E LTR MaLR 2 571 -22 912 262 109 22 chr1 37619557 37619780 -244573884 + MLT1F1-int LTR MaLR 1 203 -1168 2032 137 111 28 chr1 37619780 37619982 -244573682 - MSTC LTR MaLR 0 428 244 1830 142 31 0 chr1 37619982 37620271 -244573393 - AluSg SINE Alu -12 298 1 2032 137 111 28 chr1 37620271 37620463 -244573201 - MSTC LTR MaLR -184 244 1 912 262 109 22 chr1 37620463 37620705 -244572959 + MLT1F1-int LTR MaLR 203 606 -765 801 230 30 157 chr1 37621212 37621682 -244571982 + MLT1F1-int LTR MaLR 961 1370 -1 1679 253 88 17 chr1 37621683 37622219 -244571445 + MLT1F1 LTR MaLR 1 567 0 409 359 111 35 chr1 37622248 37622591 -244571073 + L2 LINE L2 2897 3265 -7 272 163 0 0 chr1 37622606 37622655 -244571009 - MER90 LTR ERV1 -126 449 401 187 264 132 9 chr1 37622656 37622762 -244570902 - MIR SINE MIR -42 220 102 478 280 75 32 chr1 37623747 37623835 -244569829 - MIR SINE MIR -4 258 175 2857 195 28 21 chr1 37623835 37624445 -244569219 - MER90 LTR ERV1 0 614 1 478 280 75 32 chr1 37624445 37624542 -244569122 - MIR SINE MIR -87 175 65 385 304 65 43 chr1 37624644 37624864 -244568800 + MIR SINE MIR 10 233 -29 762 259 166 0 chr1 37624873 37625078 -244568586 - MIR SINE MIR -19 243 5 186 212 82 94 chr1 37627042 37627127 -244566537 - MIR3 SINE MIR -14 194 111 309 231 62 97 chr1 37628073 37628268 -244565396 + MIR SINE MIR 48 235 -27 584 271 64 16 chr1 37628269 37628457 -244565207 - MIR SINE MIR -2 260 64 210 313 152 36 chr1 37628460 37628572 -244565092 + L2 LINE L2 3148 3272 0 228 330 160 0 chr1 37629366 37629460 -244564204 - L2 LINE L2 -42 3230 3122 605 249 120 42 chr1 37630177 37630535 -244563129 - L1ME4a LINE L1 -211 5910 5525 228 220 40 0 chr1 37630542 37630592 -244563072 - MIR SINE MIR -150 112 61 284 179 30 0 chr1 37631162 37631229 -244562435 + CT-rich Low_complexity Low_complexity 1 69 0 418 295 230 14 chr1 37631311 37631589 -244562075 - L3 LINE CR1 -14 1563 1226 420 204 71 72 chr1 37631614 37631784 -244561880 + MIR SINE MIR 31 198 -64 576 339 141 14 chr1 37632538 37633169 -244560495 + L2 LINE L2 2148 2858 -456 412 254 166 28 chr1 37633392 37633573 -244560091 - MIR SINE MIR -26 236 31 198 167 0 0 chr1 37633797 37633833 -244559831 + (CAATT)n Simple_repeat Simple_repeat 2 37 0 746 284 70 9 chr1 37634192 37634421 -244559243 + MIR SINE MIR 13 255 -7 373 354 88 8 chr1 37634536 37634796 -244558868 - L2 LINE L2 -527 2787 2507 307 325 114 26 chr1 37635221 37635449 -244558215 - MIR SINE MIR -12 250 3 710 252 169 21 chr1 37635482 37635819 -244557845 + L1ME4a LINE L1 5516 5902 -219 1179 296 78 40 chr1 37636096 37637122 -244556542 + L1ME4a LINE L1 4101 5203 -1278 2173 67 0 11 chr1 37637122 37637435 -244556229 - AluY SINE Alu 0 310 1 1179 296 78 40 chr1 37637435 37637981 -244555683 + L1ME4a LINE L1 5203 5727 -754 324 127 0 0 chr1 37638119 37638174 -244555490 + (TG)n Simple_repeat Simple_repeat 2 56 0 310 231 322 0 chr1 37638408 37638529 -244555135 + L1ME4a LINE L1 5962 6121 0 2321 87 0 0 chr1 37638585 37638895 -244554769 - AluY SINE Alu -1 310 1 22 0 0 0 chr1 37638900 37638922 -244554742 + AT_rich Low_complexity Low_complexity 1 22 0 7733 24 1 0 chr1 37638938 37640435 -244553229 + L1PA3 LINE L1 4668 6162 0 30 69 0 0 chr1 37640626 37640684 -244552980 + AT_rich Low_complexity Low_complexity 1 58 0 3453 78 0 2 chr1 37640690 37641140 -244552524 - L1PB2 LINE L1 -1 6150 5702 220 209 179 0 chr1 37641645 37641712 -244551952 - MIR SINE MIR -103 159 81 1448 281 49 15 chr1 37642636 37643105 -244550559 + LTR16C LTR ERVL 1 485 -6 205 338 25 0 chr1 37643360 37643440 -244550224 + MIR SINE MIR 106 187 -75 410 270 152 38 chr1 37643444 37643655 -244550009 - MIR SINE MIR 0 262 28 379 227 10 21 chr1 37644865 37644962 -244548702 + MIR SINE MIR 58 153 -55 942 258 18 18 chr1 37645100 37645375 -244548289 - L2 LINE L2 -222 3091 2817 246 316 211 0 chr1 37645680 37645794 -244547870 + MIR3 SINE MIR 30 167 -41 331 319 121 7 chr1 37646169 37646310 -244547354 - MIR SINE MIR -10 252 96 388 195 9 20 chr1 37646409 37646517 -244547147 - MIR SINE MIR -68 140 37 337 274 66 28 chr1 37647752 37647858 -244545806 + MIR3 SINE MIR 15 124 -84 191 298 18 0 chr1 37648094 37648151 -244545513 - MIR SINE MIR -55 153 96 299 306 52 41 chr1 37648507 37648669 -244544995 - MIR SINE MIR -25 183 15 411 289 144 12 chr1 37648713 37648860 -244544804 + MIR SINE MIR 5 181 -81 2345 100 0 10 chr1 37648860 37649160 -244544504 + AluSq SINE Alu 1 297 -16 411 289 144 12 chr1 37649160 37649234 -244544430 + MIR SINE MIR 181 244 -18 196 193 18 53 chr1 37649200 37649257 -244544407 + L2 LINE L2 3255 3309 -4 * 260 215 101 51 chr1 37649424 37649503 -244544161 + MIR SINE MIR 110 192 -70 262 306 91 41 chr1 37649717 37649838 -244543826 - L2 LINE L2 -4 3309 3183 284 286 59 25 chr1 37650014 37650133 -244543531 + L2 LINE L2 3191 3313 0 354 313 31 68 chr1 37650343 37650535 -244543129 - MER5A DNA MER1_type -2 187 3 373 216 52 0 chr1 37650807 37650904 -244542760 - MER5B DNA MER1_type -3 175 74 718 284 152 10 chr1 37652282 37652585 -244541079 - L2 LINE L2 -337 2977 2632 627 105 1 20 chr1 37652714 37652833 -244540831 + L1MB3 LINE L1 5723 5837 -294 495 210 18 66 chr1 37652875 37653018 -244540646 + L1MB3 LINE L1 6005 6141 -42 2005 94 68 0 chr1 37653018 37653311 -244540353 - AluY SINE Alu 0 311 1 495 210 18 66 chr1 37653311 37653333 -244540331 + L1MB3 LINE L1 6141 6163 -20 869 162 0 22 chr1 37653333 37653469 -244540195 - FLAM_A SINE Alu 0 133 1 958 300 146 23 chr1 37653524 37654208 -244539456 - L2 LINE L2 -1060 2254 1487 579 266 25 101 chr1 37654246 37654562 -244539102 + MLT1I LTR MaLR 73 364 -45 945 299 118 66 chr1 37654576 37655476 -244538188 - L2 LINE L2 -453 2861 1898 2450 70 0 29 chr1 37655476 37655792 -244537872 - AluY SINE Alu -4 307 1 945 299 118 66 chr1 37655792 37655931 -244537733 - L2 LINE L2 -1416 1898 1768 1853 127 4 4 chr1 37656219 37656478 -244537186 + AluSx SINE Alu 51 309 -3 189 269 39 39 chr1 37656810 37656888 -244536776 + L2 LINE L2 3229 3306 -7 674 298 121 20 chr1 37657627 37657973 -244535691 + L2 LINE L2 2933 3313 0 194 301 151 82 chr1 37658499 37658718 -244534946 + L2 LINE L2 2692 2925 -389 1350 267 78 5 chr1 37658913 37659321 -244534343 + MLT1K LTR MaLR 151 588 0 234 232 122 37 chr1 37659404 37659486 -244534178 + L2 LINE L2 3184 3272 0 193 294 59 0 chr1 37659514 37659582 -244534082 + L2 LINE L2 3201 3272 0 1922 156 3 13 chr1 37661170 37661477 -244532187 - AluJb SINE Alu -8 304 1 347 289 66 36 chr1 37661903 37662069 -244531595 - MIR SINE MIR -72 190 20 288 53 0 0 chr1 37662751 37662789 -244530875 + (TG)n Simple_repeat Simple_repeat 2 39 0 268 279 99 9 chr1 37664065 37664176 -244529488 + L1MC/D LINE L1 5688 5808 -2000 934 273 8 30 chr1 37664209 37664476 -244529188 + MIR SINE MIR 1 261 -1 356 306 10 53 chr1 37666786 37666992 -244526672 - L2 LINE L2 -183 3089 2893 248 348 34 42 chr1 37667114 37667232 -244526432 + MIR SINE MIR 20 136 -126 402 314 180 35 chr1 37667352 37667785 -244525879 - L2 LINE L2 -581 2733 2238 326 355 134 28 chr1 37667962 37668179 -244525485 - L2 LINE L2 -18 3254 3015 201 74 0 0 chr1 37668182 37668209 -244525455 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 1479 245 72 33 chr1 37668210 37668612 -244525052 - L2 LINE L2 -12 3301 2916 2190 116 0 41 chr1 37668612 37668930 -244524734 + AluSq SINE Alu 1 305 -8 1479 245 72 33 chr1 37668930 37669273 -244524391 - L2 LINE L2 -397 2916 2510 213 351 53 20 chr1 37669259 37669410 -244524254 - L2 LINE L2 -290 3023 2868 * 203 290 114 38 chr1 37669917 37670048 -244523616 - L2 LINE L2 -222 3050 2910 181 240 47 108 chr1 37670068 37670197 -244523467 - L2 LINE L2 -508 2806 2686 206 333 158 26 chr1 37670887 37671266 -244522398 + L2 LINE L2 2246 2674 -640 782 118 71 35 chr1 37671288 37671458 -244522206 - L1MA7 LINE L1 0 6291 6116 1397 103 20 43 chr1 37671458 37671523 -244522141 - L1MA4A LINE L1 -8 6295 6230 2554 140 59 5 chr1 37671523 37671929 -244521735 + MSTA LTR MaLR 1 428 0 1397 103 20 43 chr1 37671929 37672113 -244521551 - L1MA4A LINE L1 -73 6230 6049 419 200 137 0 chr1 37672113 37672208 -244521456 + MER1B DNA MER1_type 1 108 -189 * 889 81 16 8 chr1 37672195 37672319 -244521345 + MER1B DNA MER1_type 215 339 0 4515 127 6 55 chr1 37672319 37672584 -244521080 - L1MA4A LINE L1 -247 6056 5780 695 186 8 17 chr1 37672584 37672702 -244520962 - FLAM_A SINE Alu -16 117 1 4515 127 6 55 chr1 37672702 37673996 -244519668 - L1MA4A LINE L1 -523 5780 4566 824 307 121 25 chr1 37674004 37674583 -244519081 + L2 LINE L2 2666 3313 0 371 271 42 0 chr1 37674588 37674684 -244518980 - MIR SINE MIR -133 129 30 792 245 47 30 chr1 37675783 37676016 -244517648 - MIR SINE MIR -15 247 11 665 237 132 22 chr1 37676519 37676747 -244516917 + MIR SINE MIR 2 254 -8 944 263 23 27 chr1 37676775 37677034 -244516630 - MIR SINE MIR 0 262 5 1348 283 93 26 chr1 37677278 37677797 -244515867 + L2 LINE L2 2240 2723 -590 2036 114 0 0 chr1 37677797 37678059 -244515605 - AluSg SINE Alu -7 303 42 1348 283 93 26 chr1 37678059 37678530 -244515134 + L2 LINE L2 2723 3311 -2 180 226 0 75 chr1 37678531 37678584 -244515080 + L2 LINE L2 3265 3313 0 251 252 136 58 chr1 37678594 37678749 -244514915 - MIR SINE MIR -83 179 13 345 350 116 37 chr1 37680029 37680791 -244512873 - L2 LINE L2 -427 2887 2066 443 287 67 12 chr1 37682266 37682430 -244511234 + MER117 DNA MER1_type 25 197 0 247 283 20 30 chr1 37682645 37682744 -244510920 - L2 LINE L2 -1309 2005 1908 449 244 163 66 chr1 37682842 37683088 -244510576 + L1ME4a LINE L1 5839 6112 -9 1988 135 0 32 chr1 37683088 37683400 -244510264 + AluJo SINE Alu 11 312 0 449 244 163 66 chr1 37683400 37683411 -244510253 + L1ME4a LINE L1 6112 6121 0 218 105 26 0 chr1 37683412 37683450 -244510214 + GA-rich Low_complexity Low_complexity 1 39 0 523 241 18 0 chr1 37683475 37683587 -244510077 + MER81 DNA DNA 1 114 0 223 346 16 37 chr1 37683666 37683854 -244509810 - L2 LINE L2 -1635 1679 1496 815 288 17 30 chr1 37685311 37685544 -244508120 + MIR SINE MIR 11 240 -22 439 303 186 22 chr1 37685559 37685833 -244507831 - L2 LINE L2 -109 3163 2845 551 256 115 47 chr1 37686002 37686236 -244507428 + MIR SINE MIR 1 250 -12 286 219 68 0 chr1 37686267 37686340 -244507324 + L2 LINE L2 3205 3282 -31 229 196 39 0 chr1 37686396 37686447 -244507217 - L2 LINE L2 0 3313 3261 271 262 143 77 chr1 37688169 37688316 -244505348 + MIR SINE MIR 10 171 -91 2173 164 63 14 chr1 37688316 37688761 -244504903 - MLT1C LTR MaLR 0 467 1 271 262 143 77 chr1 37688761 37688781 -244504883 + MIR SINE MIR 171 188 -74 478 244 43 90 chr1 37688804 37689038 -244504626 - MIR SINE MIR -19 243 21 233 292 90 0 chr1 37689953 37690042 -244503622 - MIR SINE MIR 0 262 166 227 116 23 0 chr1 37690128 37690171 -244503493 + L2 LINE L2 1777 1820 -1494 26 74 0 0 chr1 37690180 37690234 -244503430 + AT_rich Low_complexity Low_complexity 1 54 0 485 303 7 26 chr1 37690294 37690449 -244503215 + L2 LINE L2 3162 3313 0 430 256 43 43 chr1 37690447 37690611 -244503053 - MIR SINE MIR -65 197 34 * 273 291 185 26 chr1 37690936 37691087 -244502577 - MER5B DNA MER1_type -2 176 2 215 306 137 33 chr1 37691278 37691461 -244502203 + L2 LINE L2 2587 2788 -526 220 270 165 26 chr1 37691662 37691777 -244501887 + L2 LINE L2 2932 3062 -210 239 307 107 60 chr1 37692092 37692242 -244501422 + L2 LINE L2 3115 3271 -1 27 0 0 0 chr1 37692256 37692283 -244501381 + AT_rich Low_complexity Low_complexity 1 27 0 288 0 0 0 chr1 37692290 37692322 -244501342 + (CA)n Simple_repeat Simple_repeat 2 33 0 725 241 157 5 chr1 37692339 37692530 -244501134 - MER58A DNA MER1_type -1 223 4 514 310 127 0 chr1 37693007 37693220 -244500444 - MIR SINE MIR -18 244 5 799 208 33 0 chr1 37693554 37693737 -244499927 - MER53 DNA DNA 0 189 1 325 230 126 15 chr1 37694416 37694551 -244499113 - MER103 DNA DNA -9 157 8 2212 99 0 51 chr1 37694981 37695295 -244498369 - AluSx SINE Alu -14 298 1 583 316 46 0 chr1 37696195 37696369 -244497295 - MIR SINE MIR -70 192 11 768 259 64 32 chr1 37697360 37697611 -244496053 + MIR SINE MIR 4 262 0 356 298 209 41 chr1 37698156 37698740 -244494924 + L2 LINE L2 2223 2904 -410 365 0 22 0 chr1 37698744 37698789 -244494875 + (GA)n Simple_repeat Simple_repeat 2 47 0 304 239 115 46 chr1 37700143 37700361 -244493303 + L2 LINE L2 2818 3050 -222 187 267 53 27 chr1 37700435 37700510 -244493154 - L2 LINE L2 -1132 2182 2106 695 282 25 86 chr1 37700712 37701036 -244492628 + L2 LINE L2 2899 3191 -122 312 70 0 0 chr1 37701036 37701079 -244492585 + (CA)n Simple_repeat Simple_repeat 2 44 0 695 282 25 86 chr1 37701079 37701194 -244492470 + L2 LINE L2 3191 3311 -2 186 167 0 0 chr1 37701198 37701234 -244492430 + (TGAA)n Simple_repeat Simple_repeat 4 39 0 640 261 196 16 chr1 37701365 37701687 -244491977 + MLT1J2 LTR MaLR 2 381 -69 511 261 42 0 chr1 37702353 37702495 -244491169 + MIR SINE MIR 88 235 -27 460 235 46 65 chr1 37702492 37702645 -244491019 - MIR SINE MIR -63 199 50 * 2733 147 12 20 chr1 37702869 37703360 -244490304 + L1MB3 LINE L1 5695 6181 -2 498 279 89 47 chr1 37703864 37704054 -244489610 + MIR SINE MIR 20 217 -45 225 94 0 0 chr1 37704094 37704126 -244489538 + (CAT)n Simple_repeat Simple_repeat 2 33 0 476 101 79 0 chr1 37704451 37704540 -244489124 - L1MB3 LINE L1 0 6183 6088 346 20 41 0 chr1 37704540 37704581 -244489083 + L1PA6 LINE L1 6104 6154 0 1580 150 7 4 chr1 37704581 37704854 -244488810 - L1MB3 LINE L1 -80 6103 5830 1097 291 102 16 chr1 37704921 37705668 -244487996 + L2 LINE L2 2413 3308 -5 273 163 0 0 chr1 37706290 37706339 -244487325 + (TG)n Simple_repeat Simple_repeat 2 50 0 694 216 8 0 chr1 37706550 37706684 -244486980 + MIR SINE MIR 78 212 -50 1446 219 68 15 chr1 37706697 37707262 -244486402 + MLT1E1 LTR MaLR 1 654 0 258 278 122 11 chr1 37707634 37707724 -244485940 + L2 LINE L2 3148 3247 -25 486 290 152 40 chr1 37707743 37707855 -244485809 + L2 LINE L2 2740 2838 -475 502 220 18 9 chr1 37707855 37707964 -244485700 - MER81 DNA DNA -3 111 2 486 290 152 40 chr1 37707964 37708311 -244485353 + L2 LINE L2 2838 3254 -59 363 298 113 13 chr1 37708810 37708961 -244484703 - L2 LINE L2 -6 3266 3101 324 242 150 17 chr1 37709832 37709952 -244483712 + MIR SINE MIR 14 149 -113 1839 172 49 0 chr1 37709966 37710314 -244483350 + MSTB1 LTR MaLR 68 432 0 308 233 0 23 chr1 37710330 37710416 -244483248 + MIR SINE MIR 167 250 -12 1044 226 229 16 chr1 37710897 37711378 -244482286 + L2 LINE L2 2725 3313 0 602 216 32 0 chr1 37711605 37711730 -244481934 - MER5B DNA MER1_type -6 172 44 2122 214 24 50 chr1 37711791 37712409 -244481255 - L1ME1 LINE L1 -44 6122 5521 245 294 0 0 chr1 37712412 37712480 -244481184 - MER5B DNA MER1_type -110 68 1 854 222 108 19 chr1 37712521 37712733 -244480931 + MIR SINE MIR 13 243 -19 251 330 11 21 chr1 37712740 37712834 -244480830 + L2 LINE L2 3179 3271 -1 516 316 30 37 chr1 37713113 37713356 -244480308 + MIR SINE MIR 3 248 -14 711 241 47 6 chr1 37714027 37714197 -244479467 - MER45A DNA AcHobo -1 177 1 198 258 81 0 chr1 37714251 37714313 -244479351 - L2 LINE L2 -69 3203 3137 1441 248 115 14 chr1 37716669 37717182 -244476482 + MLT1E LTR MaLR 2 566 -27 181 363 44 0 chr1 37717422 37717513 -244476151 - L2 LINE L2 -1093 2221 2127 920 203 60 49 chr1 37717529 37717795 -244475869 + MER33 DNA MER1_type 54 322 -2 240 111 0 0 chr1 37717795 37717831 -244475833 + (TAGA)n Simple_repeat Simple_repeat 3 38 0 776 298 34 4 chr1 37717847 37718082 -244475582 - MIR SINE MIR -13 249 8 180 111 0 0 chr1 37718096 37718123 -244475541 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 2341 90 23 0 chr1 37718190 37718491 -244475173 + AluSp SINE Alu 1 308 -5 252 86 0 0 chr1 37718552 37718587 -244475077 + (TGAA)n Simple_repeat Simple_repeat 4 38 0 342 307 19 14 chr1 37719118 37719242 -244474422 - MIR SINE MIR -84 124 3 678 204 79 7 chr1 37719256 37719408 -244474256 + MIR SINE MIR 88 250 -12 2443 175 64 25 chr1 37720711 37721197 -244472467 + MLT1D LTR MaLR 1 505 0 216 304 52 34 chr1 37721285 37721433 -244472231 - MIR SINE MIR -21 187 31 233 288 68 25 chr1 37721776 37721894 -244471770 - L2 LINE L2 0 3272 3150 212 337 67 0 chr1 37722745 37722834 -244470830 - L2 LINE L2 -32 3281 3187 445 256 29 36 chr1 37722837 37722974 -244470690 - MIR SINE MIR -62 200 65 349 250 250 0 chr1 37723675 37723791 -244469873 + L2 LINE L2 3169 3313 0 243 0 0 0 chr1 37723846 37723873 -244469791 + (CA)n Simple_repeat Simple_repeat 2 28 0 419 278 142 11 chr1 37725071 37725247 -244468417 + MIR SINE MIR 61 259 -3 802 279 48 0 chr1 37726356 37726585 -244467079 - MIR SINE MIR -7 255 16 571 292 128 44 chr1 37726691 37727074 -244466590 - L2 LINE L2 -1 3271 2857 915 222 19 49 chr1 37727159 37727393 -244466271 - MIR SINE MIR 0 262 34 209 180 49 0 chr1 37728044 37728105 -244465559 + (TG)n Simple_repeat Simple_repeat 1 64 0 709 212 12 5 chr1 37728121 37728291 -244465373 + MIR SINE MIR 5 262 0 272 258 34 34 chr1 37728547 37728636 -244465028 - MIR3 SINE MIR -3 205 117 196 345 0 0 chr1 37728754 37728812 -244464852 - MIR SINE MIR -116 92 35 394 311 273 19 chr1 37728988 37729358 -244464306 - L2 LINE L2 0 3313 2850 302 231 13 26 chr1 37729830 37729908 -244463756 - MIR SINE MIR -17 245 169 548 335 61 51 chr1 37729909 37730300 -244463364 - L2 LINE L2 -1 3271 2877 328 300 125 46 chr1 37730364 37730644 -244463020 - L2 LINE L2 -654 2660 2359 493 269 25 118 chr1 37730694 37730973 -244462691 + MIR SINE MIR 1 253 -9 222 304 68 42 chr1 37731022 37731213 -244462451 - L2 LINE L2 -273 2999 2804 237 215 77 0 chr1 37731513 37731578 -244462086 - L2 LINE L2 -648 2666 2597 2190 97 0 29 chr1 37732230 37732540 -244461124 + AluSx SINE Alu 1 301 -11 328 289 62 10 chr1 37732549 37732646 -244461018 + MER5A DNA MER1_type 74 175 -14 408 232 11 0 chr1 37732697 37732792 -244460872 - MER5A DNA MER1_type -80 109 14 1504 196 68 0 chr1 37732878 37733159 -244460505 + AluJo SINE Alu 3 302 -10 502 112 10 10 chr1 37733163 37733261 -244460403 + (GGAA)n Simple_repeat Simple_repeat 3 100 0 374 272 0 22 chr1 37733904 37733996 -244459668 + MIR SINE MIR 34 123 -139 223 283 57 107 chr1 37734295 37734472 -244459192 + L2 LINE L2 3075 3242 -30 418 245 129 17 chr1 37734755 37734908 -244458756 - MIR SINE MIR -63 145 20 266 291 0 13 chr1 37735500 37735579 -244458085 + MIR SINE MIR 29 106 -156 616 292 94 9 chr1 37735638 37735871 -244457793 - MIR SINE MIR -6 256 4 333 311 79 57 chr1 37735926 37736241 -244457423 + L2 LINE L2 2174 2495 -819 312 204 23 68 chr1 37736462 37736550 -244457114 + L2 LINE L2 3230 3313 0 547 339 111 14 chr1 37736793 37737082 -244456582 + L2 LINE L2 2996 3312 -1 783 228 10 25 chr1 37737161 37737363 -244456301 + L1ME1 LINE L1 4894 5092 -1054 357 24 0 0 chr1 37737373 37737415 -244456249 + (TA)n Simple_repeat Simple_repeat 2 43 0 22 70 0 0 chr1 37737427 37737470 -244456194 + AT_rich Low_complexity Low_complexity 1 43 0 3086 218 57 38 chr1 37737475 37738355 -244455309 + L1ME1 LINE L1 5266 6162 -4 1950 108 0 4 chr1 37738369 37738627 -244455037 + AluSq SINE Alu 36 292 -21 525 162 17 117 chr1 37739177 37739356 -244454308 - MER53 DNA DNA 0 189 29 1723 158 46 3 chr1 37739358 37739642 -244454022 - AluJo SINE Alu -6 306 11 215 180 160 0 chr1 37740060 37740110 -244453554 + MIR SINE MIR 87 144 -118 515 257 84 59 chr1 37740116 37740596 -244453068 + L1MC/D LINE L1 5188 5682 -488 1177 116 79 112 chr1 37740623 37740864 -244452800 - AluJb SINE Alu -79 233 1 672 204 0 59 chr1 37741149 37741301 -244452363 - L2 LINE L2 -1 3312 3170 1406 136 20 0 chr1 37741302 37741501 -244452163 + AluSg/x SINE Alu 97 299 -13 651 262 110 12 chr1 37741501 37741829 -244451835 - L2 LINE L2 -135 3178 2819 334 322 79 13 chr1 37741846 37741998 -244451666 - MIR3 SINE MIR -13 195 34 2016 114 29 3 chr1 37742047 37742363 -244451301 + L1MA2 LINE L1 5981 6304 0 379 279 57 77 chr1 37742738 37742985 -244450679 - L2 LINE L2 -46 3226 2985 2433 57 0 22 chr1 37743023 37743340 -244450324 + AluY SINE Alu 1 310 -1 642 248 89 25 chr1 37743378 37743580 -244450084 + MIR SINE MIR 47 261 -1 239 239 15 85 chr1 37743634 37743764 -244449900 - L2 LINE L2 -228 3044 2924 661 325 31 31 chr1 37743894 37744180 -244449484 - L2 LINE L2 -556 2758 2473 668 192 45 45 chr1 37745063 37745219 -244448445 - L2 LINE L2 0 3313 3158 260 281 21 52 chr1 37745359 37745455 -244448209 - L3 LINE CR1 -932 645 553 241 348 22 72 chr1 37745552 37745734 -244447930 + MIR SINE MIR 20 191 -63 339 229 58 8 chr1 37746037 37746171 -244447493 - L1ME4a LINE L1 -14 6097 1196 693 257 165 15 chr1 37746214 37746475 -244447189 - L1ME LINE L1 -338 5783 5484 343 337 88 6 chr1 37747857 37748038 -244445626 + MER117 DNA MER1_type 2 197 0 368 317 176 40 chr1 37749587 37749940 -244443724 - MLT1K LTR MaLR -30 558 158 270 268 14 0 chr1 37750377 37750448 -244443216 + MIR SINE MIR 191 262 0 200 204 23 0 chr1 37750781 37750825 -244442839 + GA-rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chr1 37751091 37751114 -244442550 + AT_rich Low_complexity Low_complexity 1 23 0 2268 78 0 29 chr1 37751324 37751633 -244442031 + AluY SINE Alu 1 300 -11 287 181 14 0 chr1 37751788 37751860 -244441804 + (TATATG)n Simple_repeat Simple_repeat 2 74 0 24 53 0 0 chr1 37752025 37752063 -244441601 + AT_rich Low_complexity Low_complexity 1 38 0 206 315 74 39 chr1 37752790 37752993 -244440671 - L2 LINE L2 -622 2692 2483 399 370 0 8 chr1 37753233 37753360 -244440304 + L2 LINE L2 3134 3259 -13 2193 112 0 0 chr1 37753524 37753829 -244439835 + AluSc SINE Alu 3 307 -2 432 192 31 79 chr1 37754718 37754948 -244438716 + L1ME LINE L1 5201 5421 -743 250 248 9 9 chr1 37755489 37755594 -244438070 + GA-rich Low_complexity Low_complexity 3 107 0 378 286 286 0 chr1 37755621 37755824 -244437840 - MIR SINE MIR 0 262 2 2322 142 25 63 chr1 37756713 37757156 -244436508 + MSTC LTR MaLR 1 426 -2 820 213 29 11 chr1 37757424 37757598 -244436066 - MER45A DNA AcHobo -1 177 1 1582 178 13 20 chr1 37758123 37758427 -244435237 - AluJo SINE Alu -5 307 6 217 218 39 90 chr1 37758436 37758514 -244435150 + MIR SINE MIR 76 149 -113 350 312 16 70 chr1 37758517 37758703 -244434961 + L1MC4a LINE L1 5678 5853 -1955 646 222 0 11 chr1 37759649 37759829 -244433835 + GA-rich Low_complexity Low_complexity 3 180 0 395 296 128 21 chr1 37759882 37760210 -244433454 + HAL1b LINE L1 54 416 -932 1513 273 85 35 chr1 37760256 37761058 -244432606 + HAL1b LINE L1 506 1347 -1 347 264 104 49 chr1 37761173 37761317 -244432347 + MIR SINE MIR 104 255 -7 23 0 0 0 chr1 37761572 37761595 -244432069 + AT_rich Low_complexity Low_complexity 1 23 0 200 204 23 0 chr1 37761861 37761905 -244431759 + CT-rich Low_complexity Low_complexity 1 45 0 270 268 14 0 chr1 37762238 37762309 -244431355 - MIR SINE MIR 0 262 191 368 317 176 40 chr1 37762746 37763099 -244430565 + MLT1K LTR MaLR 158 558 -30 341 343 88 6 chr1 37764644 37764825 -244428839 - MER117 DNA MER1_type 0 197 2 693 257 165 15 chr1 37766207 37766468 -244427196 + L1ME LINE L1 5484 5783 -338 339 229 58 8 chr1 37766511 37766645 -244427019 + L1ME4a LINE L1 1196 6097 -14 260 343 22 72 chr1 37766948 37767130 -244426534 - MIR SINE MIR -63 145 20 260 281 21 52 chr1 37767227 37767323 -244426341 + L3 LINE CR1 553 645 -932 668 192 45 45 chr1 37767463 37767619 -244426045 + L2 LINE L2 3158 3313 0 654 349 40 30 chr1 37768502 37768872 -244424792 + L2 LINE L2 2473 2846 -468 239 239 15 85 chr1 37768918 37769048 -244424616 + L2 LINE L2 2924 3044 -228 642 248 89 25 chr1 37769102 37769304 -244424360 - MIR SINE MIR -1 261 47 2433 57 0 22 chr1 37769342 37769659 -244424005 - AluY SINE Alu -1 310 1 379 279 57 77 chr1 37769697 37769944 -244423720 + L2 LINE L2 2985 3226 -46 2016 114 29 3 chr1 37770319 37770635 -244423029 - L1MA2 LINE L1 0 6304 5981 330 322 79 13 chr1 37770684 37770836 -244422828 + MIR3 SINE MIR 34 195 -13 629 262 110 12 chr1 37770853 37771181 -244422483 + L2 LINE L2 2819 3178 -135 1304 136 20 0 chr1 37771181 37771380 -244422284 - AluSg/x SINE Alu -13 299 97 679 204 0 59 chr1 37771381 37771533 -244422131 + L2 LINE L2 3170 3312 -1 187 250 92 26 chr1 37772179 37772255 -244421409 - L2 LINE L2 0 3272 3192 1977 295 103 14 chr1 37772499 37773434 -244420230 + L2 LINE L2 2154 3181 -91 268 232 222 20 chr1 37774029 37774128 -244419536 - MIR SINE MIR -114 148 30 205 352 0 0 chr1 37774516 37774587 -244419077 - L3 LINE CR1 -1 1576 1506 330 26 0 0 chr1 37774748 37774787 -244418877 + (TG)n Simple_repeat Simple_repeat 2 40 0 24 85 0 0 chr1 37774805 37774864 -244418800 + AT_rich Low_complexity Low_complexity 1 59 0 2950 60 5 5 chr1 37774878 37775261 -244418403 - L1PA8 LINE L1 -8 6164 5782 1737 39 0 0 chr1 37775261 37775466 -244418198 + L1PA8 LINE L1 5571 5775 -397 21 0 0 0 chr1 37775467 37775488 -244418176 + AT_rich Low_complexity Low_complexity 1 21 0 204 40 0 0 chr1 37775522 37775547 -244418117 + (TAGA)n Simple_repeat Simple_repeat 4 28 0 640 226 14 0 chr1 37775660 37775806 -244417858 + MER104 DNA Tc2 29 176 -4 552 291 92 31 chr1 37775838 37776099 -244417565 - L3 LINE CR1 -83 1494 1218 1642 179 28 10 chr1 37776209 37776500 -244417164 + AluJo SINE Alu 1 296 -16 1243 283 81 21 chr1 37776771 37777467 -244416197 - L1ME4a LINE L1 -76 6045 5308 1084 195 70 0 chr1 37777723 37777938 -244415726 + MIR SINE MIR 33 262 0 212 318 45 23 chr1 37777916 37778048 -244415616 - L3 LINE CR1 -794 783 649 * 399 266 106 35 chr1 37778410 37778636 -244415028 + L2 LINE L2 2699 2940 -374 925 260 146 41 chr1 37778638 37779000 -244414664 - L2 LINE L2 -1 3312 2913 478 346 77 13 chr1 37779354 37779588 -244414076 + MIR SINE MIR 8 256 -6 999 182 0 6 chr1 37780602 37780783 -244412881 + MER104 DNA MER2_type 1 180 0 314 258 0 0 chr1 37780855 37780917 -244412747 - L2 LINE L2 0 3313 3252 658 277 89 30 chr1 37780951 37781186 -244412478 - MIR SINE MIR -12 250 2 1020 61 0 0 chr1 37781564 37781695 -244411969 - AluY SINE Alu -179 132 2 1388 117 80 0 chr1 37781710 37781949 -244411715 - Tigger3(Golem) DNA MER2_type -285 2744 2487 1874 121 0 8 chr1 37781965 37782230 -244411434 - AluSq SINE Alu -50 263 1 242 131 66 0 chr1 37782275 37782336 -244411328 - L1MA9 LINE L1 -13 6299 6235 425 156 0 0 chr1 37783477 37783541 -244410123 + AluJ/FLAM SINE Alu 3 66 -246 1648 184 0 14 chr1 37783701 37783995 -244409669 - AluJb SINE Alu -19 293 4 180 323 20 50 chr1 37784357 37784456 -244409208 - L2 LINE L2 -21 3251 3156 370 362 82 5 chr1 37784543 37784739 -244408925 - MIR SINE MIR -14 248 38 509 340 52 0 chr1 37784799 37784990 -244408674 - MIR SINE MIR -43 219 19 335 292 52 0 chr1 37785017 37785113 -244408551 + L2 LINE L2 3159 3259 -13 185 0 40 0 chr1 37785113 37785138 -244408526 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 199 238 0 0 chr1 37786259 37786301 -244407363 + L2 LINE L2 3271 3312 -1 205 256 0 0 chr1 37786423 37786466 -244407198 + (TG)n Simple_repeat Simple_repeat 2 44 0 834 290 24 28 chr1 37786899 37787154 -244406510 - MIR SINE MIR -5 257 4 746 293 138 41 chr1 37788008 37788500 -244405164 + L1ME LINE L1 5258 5797 -324 315 196 0 0 chr1 37788825 37788881 -244404783 + MER53 DNA DNA 1 56 -133 1626 174 16 7 chr1 37788881 37789185 -244404479 + AluJb SINE Alu 1 307 -5 273 158 50 129 chr1 37789190 37789291 -244404373 + MER53 DNA DNA 97 189 0 448 248 135 8 chr1 37789496 37789629 -244404035 + MIR SINE MIR 106 255 -7 248 184 20 0 chr1 37790179 37790228 -244403436 - MIR SINE MIR -140 122 73 1216 184 10 0 chr1 37790904 37791111 -244402553 + MER3 DNA MER1_type 1 209 0 1061 168 30 25 chr1 37791119 37791322 -244402342 - MER58A DNA MER1_type 0 224 21 1672 143 92 0 chr1 37791934 37792207 -244401457 - AluSx SINE Alu -14 298 1 207 0 0 0 chr1 37792610 37792633 -244401031 + (A)n Simple_repeat Simple_repeat 1 23 0 204 327 0 0 chr1 37793602 37793657 -244400007 - L2 LINE L2 -7 3265 3211 583 222 97 36 chr1 37794085 37794333 -244399331 - HAL1b LINE L1 -125 1223 961 439 290 51 99 chr1 37795277 37795570 -244398094 + MLT1K LTR MaLR 310 588 0 439 301 112 25 chr1 37795591 37795787 -244397877 + L1M4 LINE L1 5122 5334 -812 2553 236 28 31 chr1 37795888 37796668 -244396996 + L1MD2 LINE L1 3313 4090 -2056 4248 197 102 20 chr1 37796670 37797636 -244396028 + L1MD2 LINE L1 5305 6350 -9 1112 241 48 16 chr1 37797643 37797958 -244395706 + LTR47B LTR ERVL 34 358 -85 258 182 0 0 chr1 37797981 37798025 -244395639 + Charlie5 DNA MER1_type 2540 2583 -29 275 333 40 16 chr1 37799402 37799528 -244394136 + L2 LINE L2 2722 2850 -464 694 179 86 19 chr1 37799562 37799724 -244393940 + MER97b DNA MER1_type? 7 179 -874 220 333 83 49 chr1 37799731 37799935 -244393729 + L2 LINE L2 2852 3062 -251 913 291 62 31 chr1 37799971 37800328 -244393336 + MLT1I LTR MaLR 7 378 -31 1924 189 94 70 chr1 37800328 37800715 -244392949 - MER74A LTR ERVL 0 558 153 1569 144 0 109 chr1 37800715 37801063 -244392601 + AluJb SINE Alu 1 310 -2 1924 189 94 70 chr1 37801063 37801220 -244392444 - MER74A LTR ERVL -405 153 1 913 291 62 31 chr1 37801220 37801251 -244392413 + MLT1I LTR MaLR 378 407 -2 199 257 40 95 chr1 37801259 37801407 -244392257 + L2 LINE L2 3112 3251 -62 1793 173 0 0 chr1 37801688 37801983 -244391681 + AluJo SINE Alu 1 295 -17 22 0 0 0 chr1 37801989 37802011 -244391653 + AT_rich Low_complexity Low_complexity 1 22 0 234 321 82 37 chr1 37802503 37802746 -244390918 + L3 LINE CR1 1167 1420 -157 190 261 34 11 chr1 37803555 37803643 -244390021 + L2 LINE L2 2802 2891 -423 1901 104 10 14 chr1 37803645 37803933 -244389731 - AluY SINE Alu -24 287 1 906 93 0 0 chr1 37803936 37804054 -244389610 - AluY SINE Alu -179 132 15 310 327 32 121 chr1 37804054 37804427 -244389237 + L2 LINE L2 2883 3222 -50 2675 199 47 9 chr1 37804470 37805007 -244388657 + MER68 LTR ERV1 6 562 0 228 204 0 0 chr1 37805086 37805130 -244388534 + MER103 DNA DNA 2 45 -121 353 22 22 0 chr1 37805873 37805919 -244387745 + (CA)n Simple_repeat Simple_repeat 1 47 0 2491 210 57 18 chr1 37806780 37807341 -244386323 + MER119 DNA MER1_type 1 583 0 300 331 58 8 chr1 37807572 37807693 -244385971 - L2 LINE L2 -2 3311 3185 1504 230 40 50 chr1 37807695 37808474 -244385190 + L2 LINE L2 2521 3282 -31 190 195 24 0 chr1 37810590 37810631 -244383033 + L2 LINE L2 3104 3145 -168 1385 191 81 45 chr1 37810644 37811001 -244382663 + MLT1A2 LTR MaLR 5 374 0 4423 156 7 4 chr1 37811020 37811713 -244381951 + ERVL-B1 LTR ERVL 4286 4980 -784 4261 140 72 78 chr1 37811752 37812639 -244381025 + ERVL-B1 LTR ERVL 4876 5757 -7 1198 184 82 48 chr1 37812639 37812999 -244380665 + MLT2B1 LTR ERVL 1 357 -57 308 24 0 24 chr1 37813009 37813051 -244380613 + (CA)n Simple_repeat Simple_repeat 2 42 0 238 209 0 0 chr1 37813056 37813099 -244380565 - MER2 DNA MER2_type -23 322 280 39 0 0 0 chr1 37813099 37813138 -244380526 + AT_rich Low_complexity Low_complexity 1 39 0 1001 172 26 21 chr1 37813138 37813330 -244380334 - MER2 DNA MER2_type -135 210 18 315 0 0 0 chr1 37813336 37813371 -244380293 + (TG)n Simple_repeat Simple_repeat 2 36 0 313 129 0 32 chr1 37813397 37813459 -244380205 + MLT2B1 LTR ERVL 461 520 0 558 221 0 93 chr1 37813463 37813635 -244380029 + L2 LINE L2 3158 3313 0 300 328 94 29 chr1 37813651 37813895 -244379769 - L2 LINE L2 -1308 2006 1747 514 286 203 9 chr1 37814566 37814793 -244378871 + L3 LINE CR1 366 636 -941 1440 191 7 5 chr1 37814805 37815099 -244378565 - L1MD3 LINE L1 0 7995 7523 2124 55 0 71 chr1 37815280 37815591 -244378073 + AluY SINE Alu 1 289 -22 4660 197 20 15 chr1 37816047 37816895 -244376769 - MER21B LTR ERV1 -11 852 1 526 297 82 58 chr1 37816943 37817273 -244376391 + L2 LINE L2 2921 3258 -14 875 265 56 20 chr1 37817282 37817531 -244376133 + MIR SINE MIR 2 259 -3 993 279 29 10 chr1 37817573 37817881 -244375783 - LTR16C LTR ERVL -9 482 169 731 282 21 0 chr1 37819034 37819222 -244374442 + MIR SINE MIR 53 244 -18 207 0 0 0 chr1 37819223 37819246 -244374418 + (ATG)n Simple_repeat Simple_repeat 2 24 0 242 284 236 39 chr1 37820138 37820448 -244373216 + L2 LINE L2 2887 3257 -56 196 211 0 0 chr1 37820508 37820546 -244373118 + L2 LINE L2 3221 3258 -14 291 93 0 0 chr1 37820548 37820591 -244373073 + (TGAA)n Simple_repeat Simple_repeat 2 44 0 246 250 39 29 chr1 37821145 37821249 -244372415 + L1ME4a LINE L1 5995 6099 -22 203 161 0 0 chr1 37821487 37821518 -244372146 + T-rich Low_complexity Low_complexity 5 35 0 533 226 110 18 chr1 37821931 37822095 -244371569 + MER20 DNA MER1_type 37 215 -4 340 157 96 12 chr1 37822210 37822293 -244371371 - THE1-int LTR MaLR -824 756 667 853 209 143 33 chr1 37822349 37822559 -244371105 + MIR SINE MIR 28 260 -2 2606 91 8 3 chr1 37823687 37824040 -244369624 - THE1A LTR MaLR 0 355 1 11216 96 28 7 chr1 37824040 37825587 -244368077 - THE1A-int LTR MaLR 0 1580 1 2484 115 3 8 chr1 37825587 37825944 -244367720 - THE1A LTR MaLR 0 355 1 703 288 71 4 chr1 37826350 37826576 -244367088 + MIR SINE MIR 9 249 -13 495 250 116 51 chr1 37826802 37827018 -244366646 + MIR SINE MIR 1 230 -32 287 233 50 0 chr1 37828395 37828455 -244365209 + MER5A DNA MER1_type 18 80 -109 427 290 71 7 chr1 37828992 37829147 -244364517 - L3 LINE CR1 -321 1256 1092 458 230 151 56 chr1 37829216 37829468 -244364196 - L1ME4a LINE L1 -6 6115 5840 2229 101 58 23 chr1 37829524 37829870 -244363794 + THE1B LTR MaLR 5 362 -2 378 301 9 9 chr1 37830069 37830182 -244363482 - L2 LINE L2 0 3272 3160 341 255 100 26 chr1 37830292 37830430 -244363234 - MIR SINE MIR -38 170 18 261 267 56 11 chr1 37831317 37831407 -244362257 + MIR SINE MIR 106 199 -63 704 198 213 92 chr1 37832251 37832589 -244361075 - MLT1J1 LTR MaLR -67 379 1 595 265 22 27 chr1 37832735 37832920 -244360744 - MIR3 SINE MIR -2 206 23 437 122 95 0 chr1 37832925 37832999 -244360665 + HERV9 LTR ERV1 4179 4259 -4140 263 225 127 0 chr1 37834287 37834358 -244359306 + L1ME4a LINE L1 5945 6024 -97 2749 138 19 0 chr1 37834617 37835037 -244358627 - MSTA LTR MaLR 0 428 1 182 214 71 43 chr1 37835077 37835147 -244358517 + MIR SINE MIR 132 203 -59 623 301 44 82 chr1 37835415 37835567 -244358097 - L2 LINE L2 0 3272 3116 180 0 0 0 chr1 37835567 37835587 -244358077 + (CA)n Simple_repeat Simple_repeat 2 21 0 623 301 44 82 chr1 37835587 37835800 -244357864 - L2 LINE L2 -156 3116 2921 285 236 195 49 chr1 37835831 37835954 -244357710 + L2 LINE L2 3169 3309 -4 193 275 0 0 chr1 37835975 37836015 -244357649 + L2 LINE L2 3210 3249 -23 334 280 93 9 chr1 37837076 37837183 -244356481 - MIR SINE MIR -116 146 31 1166 197 0 18 chr1 37837210 37837433 -244356231 - MER20 DNA MER1_type 0 219 1 314 292 93 25 chr1 37837540 37837701 -244355963 - MIR SINE MIR -50 212 41 261 0 0 0 chr1 37837770 37837799 -244355865 + (TA)n Simple_repeat Simple_repeat 1 29 0 2301 59 0 0 chr1 37838033 37838320 -244355344 + AluY SINE Alu 17 303 -8 2220 58 0 4 chr1 37838330 37838606 -244355058 + AluY SINE Alu 35 309 -2 757 218 24 6 chr1 37838614 37838784 -244354880 + L1PB4 LINE L1 5981 6153 -3 725 206 0 22 chr1 37838842 37838978 -244354686 - FLAM_A SINE Alu 0 133 1 200 163 23 23 chr1 37839124 37839167 -244354497 + (CATA)n Simple_repeat Simple_repeat 2 44 0 338 274 135 8 chr1 37839391 37839516 -244354148 - MIR SINE MIR -61 147 45 1518 181 139 16 chr1 37839963 37840338 -244353326 + L1M4 LINE L1 4000 4420 -1726 1618 285 140 60 chr1 37840623 37841763 -244351901 + L1MCa LINE L1 2304 3581 -2845 504 0 0 0 chr1 37841763 37841819 -244351845 + (GAAA)n Simple_repeat Simple_repeat 1 56 0 1618 285 140 60 chr1 37841819 37842051 -244351613 + L1MCa LINE L1 3581 3793 -2633 8421 55 18 202 chr1 37842235 37843933 -244349731 + SVA Other Other 1 1386 0 259 330 113 5 chr1 37843945 37844130 -244349534 - L2 LINE L2 -1498 1816 1612 461 285 58 29 chr1 37844332 37844475 -244349189 + MIR SINE MIR 47 199 -63 1463 192 0 11 chr1 37844475 37844735 -244348929 + AluJb SINE Alu 1 257 -55 461 285 58 29 chr1 37844735 37844798 -244348866 + MIR SINE MIR 199 259 -3 7669 29 0 2 chr1 37845175 37846255 -244347409 + L1PA4 LINE L1 5093 6155 0 189 107 0 0 chr1 37846862 37846890 -244346774 + (A)n Simple_repeat Simple_repeat 1 28 0 1270 266 120 30 chr1 37847132 37847797 -244345867 + L2 LINE L2 2169 2893 -421 746 207 116 74 chr1 37847970 37848127 -244345537 + L2 LINE L2 2934 3083 -230 2705 43 9 0 chr1 37848127 37848500 -244345164 + L1PA7 LINE L1 5807 6182 0 746 207 116 74 chr1 37848500 37848704 -244344960 + L2 LINE L2 3083 3311 -2 208 255 61 51 chr1 37850190 37850288 -244343376 - MIR SINE MIR -5 257 159 342 326 134 13 chr1 37850383 37850978 -244342686 + L2 LINE L2 1339 2005 -1309 262 271 187 13 chr1 37850994 37851149 -244342515 - MER5A DNA MER1_type -7 182 1 314 250 187 55 chr1 37851478 37851858 -244341806 + L2 LINE L2 2543 2972 -342 230 328 16 41 chr1 37852010 37852132 -244341532 + L2 LINE L2 3180 3298 -15 731 268 75 13 chr1 37852139 37852367 -244341297 - MIR SINE MIR -13 249 8 598 294 111 45 chr1 37852487 37853225 -244340439 + L1M4 LINE L1 3873 4659 -1487 43923 31 21 1 chr1 37853237 37859302 -244334362 + L1PA3 LINE L1 1 6155 0 276 305 0 30 chr1 37859533 37859697 -244333967 + L1M4 LINE L1 4915 5073 -1073 206 241 342 0 chr1 37860636 37860715 -244332949 + L2 LINE L2 3208 3313 0 272 246 251 23 chr1 37860830 37861001 -244332663 - L1ME4a LINE L1 -32 6089 5880 673 261 34 14 chr1 37861214 37861454 -244332210 - L1MC4a LINE L1 -356 5946 5695 599 251 11 17 chr1 37861442 37861617 -244332047 - L1ME4a LINE L1 -241 5880 5707 * 582 331 38 26 chr1 37862211 37862558 -244331106 - L1ME4a LINE L1 -457 5664 5314 2435 75 0 0 chr1 37862879 37863172 -244330492 - AluY SINE Alu -18 293 1 437 276 15 0 chr1 37863274 37863408 -244330256 + L2 LINE L2 2748 2883 -431 666 297 106 11 chr1 37863543 37863893 -244329771 + L2 LINE L2 2931 3313 0 2352 88 10 0 chr1 37864132 37864437 -244329227 - AluY SINE Alu -3 308 1 284 247 49 0 chr1 37864447 37864528 -244329136 + L2 LINE L2 3188 3272 0 461 126 0 81 chr1 37864553 37864640 -244329024 - MADE1 DNA Mariner 0 80 1 513 259 109 43 chr1 37864696 37864922 -244328742 + MIR SINE MIR 8 240 -22 448 321 21 8 chr1 37864972 37865212 -244328452 - L1ME4a LINE L1 -1711 4435 4193 381 278 8 15 chr1 37865282 37865415 -244328249 - L2 LINE L2 -955 2359 2228 181 228 123 61 chr1 37865767 37865881 -244327783 + L2 LINE L2 2950 3070 -202 1374 124 48 0 chr1 37866037 37866246 -244327418 - MER20 DNA MER1_type 0 219 1 1786 188 100 11 chr1 37866395 37866847 -244326817 - Charlie4a DNA MER1_type -2 506 15 232 250 0 0 chr1 37866977 37867029 -244326635 - L2 LINE L2 -88 3184 3133 331 301 17 9 chr1 37867228 37867368 -244326296 - MIR3 SINE MIR -52 156 16 1084 241 20 4 chr1 37868201 37868454 -244325210 - MIR SINE MIR 0 262 6 215 125 25 0 chr1 37868461 37868501 -244325163 + (TGGA)n Simple_repeat Simple_repeat 3 43 0 285 322 136 0 chr1 37868790 37868908 -244324756 + L2 LINE L2 3180 3313 0 240 367 18 0 chr1 37869159 37869268 -244324396 + MIR SINE MIR 36 146 -62 378 242 81 0 chr1 37870290 37870389 -244323275 - L1P LINE L1 -1038 5108 5002 5650 109 5 65 chr1 37870390 37870600 -244323064 + L1PA13 LINE L1 5159 5380 -800 2540 59 0 10 chr1 37870600 37870904 -244322760 + AluSg SINE Alu 1 301 -9 5650 109 5 65 chr1 37870904 37871772 -244321892 + L1PA13 LINE L1 5380 6180 0 713 216 22 78 chr1 37871805 37872037 -244321627 + L2 LINE L2 3094 3312 -1 255 271 37 37 chr1 37872224 37872331 -244321333 + L2 LINE L2 3145 3251 -21 491 272 69 39 chr1 37872352 37872584 -244321080 - MIR SINE MIR -6 256 18 462 36 0 0 chr1 37872824 37872880 -244320784 + (TC)n Simple_repeat Simple_repeat 1 56 0 715 79 0 0 chr1 37873791 37873880 -244319784 + 5S rRNA rRNA 2 90 -31 950 245 47 81 chr1 37874474 37874882 -244318782 + L1MB2 LINE L1 413 806 -5497 12821 209 37 45 chr1 37875060 37875136 -244318528 + L1MB2 LINE L1 804 879 -5528 234 0 0 0 chr1 37875136 37875162 -244318502 + (TTG)n Simple_repeat Simple_repeat 2 27 0 12821 209 37 45 chr1 37875162 37875257 -244318407 + L1MB2 LINE L1 879 973 -5434 1561 179 28 28 chr1 37875257 37875548 -244318116 + AluJo SINE Alu 1 291 -21 12821 209 37 45 chr1 37875548 37878770 -244314894 + L1MB2 LINE L1 973 4156 -2251 2112 131 0 16 chr1 37878770 37879075 -244314589 + AluSx SINE Alu 1 300 -12 12821 209 37 45 chr1 37879075 37881310 -244312354 + L1MB2 LINE L1 4156 6406 -1 2371 92 0 0 chr1 37881392 37881686 -244311978 - AluSq SINE Alu -19 294 1 540 279 29 25 chr1 37881780 37881984 -244311680 + L2 LINE L2 3107 3311 -2 403 157 10 5 chr1 37882349 37882455 -244311209 - MER5A DNA MER1_type 0 189 37 274 260 150 10 chr1 37882477 37882577 -244311087 + MER5B DNA MER1_type 4 117 -61 904 214 73 10 chr1 37882923 37883129 -244310535 + MER20 DNA MER1_type 1 219 0 278 254 114 9 chr1 37883753 37883867 -244309797 - MIR SINE MIR -19 243 118 3665 160 46 54 chr1 37883881 37884694 -244308970 + MER21B LTR ERV1 22 931 0 471 277 0 0 chr1 37884697 37884809 -244308855 - MIR SINE MIR -150 112 1 221 302 16 0 chr1 37884889 37884952 -244308712 - MIR SINE MIR -150 112 49 267 103 0 0 chr1 37885010 37885049 -244308615 + (TTCA)n Simple_repeat Simple_repeat 4 42 0 333 361 8 0 chr1 37885982 37886115 -244307549 - L2 LINE L2 -215 3057 2924 405 0 0 0 chr1 37886349 37886394 -244307270 + (TG)n Simple_repeat Simple_repeat 2 46 0 593 231 113 0 chr1 37886933 37887093 -244306571 + LTR16C LTR ERVL 314 491 0 333 258 26 46 chr1 37887603 37887814 -244305850 + (CAGAGA)n Simple_repeat Simple_repeat 1 206 0 291 276 12 31 chr1 37887777 37887940 -244305724 + (CAGA)n Simple_repeat Simple_repeat 4 163 0 * 2434 60 0 3 chr1 37890211 37890525 -244303139 + AluY SINE Alu 1 313 0 564 259 11 38 chr1 37890662 37890847 -244302817 + MIR SINE MIR 23 202 -60 347 264 215 74 chr1 37890921 37891533 -244302131 - L2 LINE L2 -1 3312 2587 185 158 0 53 chr1 37891829 37891867 -244301797 + L2 LINE L2 3271 3306 -7 438 245 125 8 chr1 37891960 37892170 -244301494 - MIR SINE MIR -10 252 15 2890 170 41 33 chr1 37893320 37893781 -244299883 + MLT2B2 LTR ERVL 1 468 -47 201 39 0 0 chr1 37893781 37893807 -244299857 + (CA)n Simple_repeat Simple_repeat 2 27 0 2890 170 41 33 chr1 37893807 37893856 -244299808 + MLT2B2 LTR ERVL 468 515 0 294 330 78 0 chr1 37893868 37893971 -244299693 - L2 LINE L2 0 3272 3162 2143 128 3 0 chr1 37894190 37894486 -244299178 + AluSx SINE Alu 1 297 -15 2175 91 56 3 chr1 37894630 37894916 -244298748 + AluSc SINE Alu 1 301 -8 433 292 63 36 chr1 37895364 37895745 -244297919 + L1P5 LINE L1 5088 5482 -674 659 135 38 173 chr1 37895765 37895950 -244297714 + MER5A DNA MER1_type 17 176 -13 366 336 129 18 chr1 37896017 37896082 -244297582 + L1MC4a LINE L1 5599 5655 -2153 342 0 0 0 chr1 37896082 37896120 -244297544 + (CA)n Simple_repeat Simple_repeat 1 38 0 366 336 129 18 chr1 37896120 37896190 -244297474 + L1MC4a LINE L1 5655 5716 -2092 2314 77 3 0 chr1 37896190 37896477 -244297187 + AluSc SINE Alu 19 306 -3 366 336 129 18 chr1 37896477 37896620 -244297044 + L1MC4a LINE L1 5716 5909 -1899 243 219 0 39 chr1 37897742 37897897 -244295767 + (TCCA)n Simple_repeat Simple_repeat 3 151 0 256 127 51 25 chr1 37897952 37898031 -244295633 + (TCCA)n Simple_repeat Simple_repeat 1 81 0 532 306 88 4 chr1 37898563 37898789 -244294875 - MIR SINE MIR -6 256 7 189 74 0 0 chr1 37899652 37899679 -244293985 + (TG)n Simple_repeat Simple_repeat 1 27 0 441 271 85 0 chr1 37900688 37900806 -244292858 - MIR SINE MIR -73 189 62 183 226 0 38 chr1 37901129 37901182 -244292482 + MIR SINE MIR 56 106 -102 737 304 100 40 chr1 37901206 37901657 -244292007 + MLT1K LTR MaLR 4 481 -107 601 212 153 6 chr1 37901894 37902065 -244291599 - L1MB8 LINE L1 -1 6177 5978 22 35 0 0 chr1 37902086 37902115 -244291549 + AT_rich Low_complexity Low_complexity 1 29 0 2913 82 2 17 chr1 37902120 37902522 -244291142 - L1PA8A LINE L1 -27 6104 5709 2505 209 32 47 chr1 37902522 37902647 -244291017 - L1ME1 LINE L1 -196 6039 5914 3039 87 5 0 chr1 37902647 37903048 -244290616 + L1PA13 LINE L1 5757 6159 -4 2505 209 32 47 chr1 37903048 37903581 -244290083 - L1ME1 LINE L1 -321 5914 5391 293 194 30 0 chr1 37903579 37903646 -244290018 + L1M4 LINE L1 4934 5002 -1144 * 2155 237 52 10 chr1 37903644 37903675 -244289989 - L1ME1 LINE L1 -1206 5009 4981 500 0 0 16 chr1 37903675 37903736 -244289928 + (TTA)n Simple_repeat Simple_repeat 1 60 0 2155 237 52 10 chr1 37903736 37904324 -244289340 - L1ME1 LINE L1 -1234 4981 4356 2204 186 45 21 chr1 37904324 37904744 -244288920 + MSTB1 LTR MaLR 3 432 0 2155 237 52 10 chr1 37904744 37904814 -244288850 - L1ME1 LINE L1 -1859 4356 4290 1481 173 4 11 chr1 37904829 37905101 -244288563 - L1P LINE L1 -1344 4802 4533 4662 259 77 36 chr1 37905101 37905611 -244288053 - L1ME1 LINE L1 -2562 3653 3165 2494 83 0 3 chr1 37905611 37905923 -244287741 - AluY SINE Alu 0 311 1 4662 259 77 36 chr1 37905923 37906283 -244287381 - L1ME1 LINE L1 -3050 3165 2821 2302 62 0 0 chr1 37906283 37906555 -244287109 + L1PA4 LINE L1 5884 6155 0 4662 259 77 36 chr1 37906555 37909191 -244284473 - L1ME1 LINE L1 -3394 2821 34 349 290 99 30 chr1 37909199 37909373 -244284291 - MLT1J LTR MaLR -268 199 31 2551 189 2 21 chr1 37909491 37909925 -244283739 - MSTB LTR MaLR 0 426 1 339 270 0 30 chr1 37910252 37910352 -244283312 + L2 LINE L2 3214 3310 -3 2131 284 123 14 chr1 37910572 37911418 -244282246 + L2 LINE L2 1706 2643 -671 1904 151 33 101 chr1 37911432 37911465 -244282199 - L1MA7 LINE L1 -4 6287 6253 1417 199 115 13 chr1 37911465 37911777 -244281887 - MER2 DNA MER2_type 0 344 1 1904 151 33 101 chr1 37911777 37911920 -244281744 - L1MA7 LINE L1 -38 6253 6102 2717 10 0 10 chr1 37911920 37912222 -244281442 - AluYa5 SINE Alu -12 299 1 1904 151 33 101 chr1 37912222 37912528 -244281136 - L1MA7 LINE L1 -189 6102 5837 484 103 0 0 chr1 37912523 37912591 -244281073 + L1MA7 LINE L1 5790 5857 -434 * 890 316 79 22 chr1 37912601 37913184 -244280480 + L2 LINE L2 2698 3312 -1 342 400 35 0 chr1 37913975 37914175 -244279489 - L3 LINE CR1 -6 1571 1365 4708 148 44 37 chr1 37914175 37915317 -244278347 + L1PB4 LINE L1 4999 6144 -12 268 241 46 37 chr1 37915235 37915322 -244278342 + L1MA4A LINE L1 6189 6279 -24 * 2110 118 3 0 chr1 37915322 37915609 -244278055 - AluSq SINE Alu -24 289 2 268 241 46 37 chr1 37915609 37915629 -244278035 + L1MA4A LINE L1 6279 6297 -6 300 330 62 46 chr1 37915633 37915740 -244277924 - L3 LINE CR1 -202 1375 1262 1815 186 33 53 chr1 37915740 37916138 -244277526 + MLT1B LTR MaLR 1 390 0 300 330 62 46 chr1 37916138 37916224 -244277440 - L3 LINE CR1 -315 1262 1179 230 250 61 106 chr1 37916254 37916386 -244277278 - L3 LINE CR1 -470 1107 982 190 343 0 0 chr1 37916716 37916783 -244276881 - L3 LINE CR1 -1174 403 337 189 324 56 0 chr1 37916838 37916909 -244276755 + MIR3 SINE MIR 98 172 -36 576 40 0 0 chr1 37916928 37917003 -244276661 + (TCTA)n Simple_repeat Simple_repeat 2 76 0 266 370 35 23 chr1 37917104 37917277 -244276387 - L3 LINE CR1 -1340 237 63 264 250 58 29 chr1 37917328 37917432 -244276232 - L3 LINE CR1 -827 750 644 755 216 0 34 chr1 37917953 37918101 -244275563 - MER5A DNA MER1_type -46 143 1 248 250 18 0 chr1 37918434 37918490 -244275174 + L3b LINE CR1 1350 1406 -177 321 312 145 0 chr1 37918641 37918779 -244274885 + MIR SINE MIR 98 255 -7 714 186 45 62 chr1 37919400 37919577 -244274087 + MER5B DNA MER1_type 5 178 0 323 396 50 8 chr1 37919971 37920231 -244273433 + L1ME3A LINE L1 5619 5889 -281 582 245 184 22 chr1 37921878 37922156 -244271508 - MLT1K LTR MaLR -58 530 208 415 273 43 56 chr1 37922399 37922560 -244271104 + MER5A DNA MER1_type 30 188 -1 2156 111 0 3 chr1 37922897 37923194 -244270470 - AluSg SINE Alu -14 296 1 565 307 35 13 chr1 37923443 37923674 -244269990 + MIR SINE MIR 17 252 -10 214 327 18 62 chr1 37924711 37924824 -244268840 - L2 LINE L2 -49 3223 3116 2052 170 20 12 chr1 37924977 37925318 -244268346 - MER2 DNA MER2_type 0 344 1 189 200 0 36 chr1 37925554 37925609 -244268055 + L2 LINE L2 3261 3313 0 767 270 59 31 chr1 37925961 37926183 -244267481 + MIR SINE MIR 11 238 -24 186 241 0 74 chr1 37926150 37926204 -244267460 + L2 LINE L2 3251 3300 -13 * 1868 214 45 24 chr1 37926351 37926776 -244266888 - MER63B DNA MER1_type -1 435 2 304 336 67 0 chr1 37926943 37927062 -244266602 - L3 LINE CR1 -1092 485 359 16901 143 18 10 chr1 37927074 37928330 -244265334 - L1PA11 LINE L1 0 6174 4929 2342 103 0 3 chr1 37928330 37928641 -244265023 + AluY SINE Alu 1 310 -1 16901 143 18 10 chr1 37928641 37930917 -244262747 - L1PA11 LINE L1 -1245 4929 2605 287 292 54 65 chr1 37931004 37931172 -244262492 - L2 LINE L2 -3 3310 3145 261 349 43 59 chr1 37931286 37931311 -244262353 - L2 LINE L2 -212 3060 3036 1166 309 94 29 chr1 37931311 37931832 -244261832 - LTR67 LTR ERVL 0 557 3 261 349 43 59 chr1 37931832 37932007 -244261657 - L2 LINE L2 -236 3036 2870 321 89 0 0 chr1 37932007 37932052 -244261612 + (TG)n Simple_repeat Simple_repeat 2 46 0 261 349 43 59 chr1 37932052 37932205 -244261459 - L2 LINE L2 -402 2870 2716 435 239 0 94 chr1 37932372 37932531 -244261133 - L1MEc LINE L1 -4740 2085 1942 423 0 0 0 chr1 37932536 37932583 -244261081 + (TG)n Simple_repeat Simple_repeat 2 48 0 413 301 54 42 chr1 37932614 37933022 -244260642 - L1MEc LINE L1 -4842 1700 1288 264 156 0 0 chr1 37933033 37933078 -244260586 + AluJ SINE Alu 85 129 -173 1011 155 0 6 chr1 37933105 37933266 -244260398 + AluJ SINE Alu 127 286 -26 764 206 14 7 chr1 37934012 37934158 -244259506 - FRAM SINE Alu -30 146 1 285 295 170 9 chr1 37934852 37934964 -244258700 + MIR SINE MIR 3 132 -130 268 234 158 70 chr1 37935113 37935271 -244258393 + L2 LINE L2 3115 3286 -27 235 239 56 56 chr1 37935282 37935353 -244258311 + MIR SINE MIR 126 196 -66 591 287 104 42 chr1 37935361 37935716 -244257948 - LTR16C LTR ERVL 0 491 115 844 11 0 0 chr1 37936090 37936183 -244257481 - L1PA4 LINE L1 -2 6153 6061 309 51 0 0 chr1 37936673 37936712 -244256952 + (GA)n Simple_repeat Simple_repeat 1 39 0 225 362 6 17 chr1 37936942 37937116 -244256548 + CT-rich Low_complexity Low_complexity 1 172 0 180 0 0 0 chr1 37937121 37937141 -244256523 + (CA)n Simple_repeat Simple_repeat 1 20 0 350 299 84 12 chr1 37937607 37937774 -244255890 + MIR SINE MIR 44 222 -40 298 235 118 0 chr1 37937970 37938055 -244255609 - MIR SINE MIR -86 176 82 23 0 0 0 chr1 37938055 37938078 -244255586 + AT_rich Low_complexity Low_complexity 1 23 0 254 281 125 0 chr1 37938078 37938174 -244255490 - MIR SINE MIR -17 245 138 21 0 0 0 chr1 37938174 37938195 -244255469 + AT_rich Low_complexity Low_complexity 1 21 0 2762 157 8 19 chr1 37938195 37938667 -244254997 - L1PA16 LINE L1 -1 6165 5699 1915 183 42 13 chr1 37938667 37939049 -244254615 + L1 LINE L1 4446 4838 -1308 337 245 75 47 chr1 37939058 37939164 -244254500 - MIR SINE MIR -60 148 40 464 303 16 31 chr1 37939422 37939736 -244253928 + CT-rich Low_complexity Low_complexity 1 309 0 413 220 39 167 chr1 37940778 37941114 -244252550 - MLT1I LTR MaLR -47 362 70 567 309 111 5 chr1 37941271 37941478 -244252186 + MIR SINE MIR 32 260 -2 830 246 30 71 chr1 37941609 37941877 -244251787 - MIR SINE MIR 0 262 6 1885 146 20 0 chr1 37942692 37942987 -244250677 - AluSx SINE Alu -11 301 1 688 304 127 24 chr1 37944160 37944578 -244249086 + L1ME4a LINE L1 5427 5887 -234 245 311 14 0 chr1 37944791 37944865 -244248799 - L2 LINE L2 -219 3053 2979 386 165 13 0 chr1 37945399 37945478 -244248186 + GA-rich Low_complexity Low_complexity 2 81 0 713 211 15 15 chr1 37945698 37945831 -244247833 - FLAM_C SINE Alu 0 133 1 245 338 58 29 chr1 37947339 37947478 -244246186 + L3 LINE CR1 953 1095 -482 567 290 117 9 chr1 37947552 37947766 -244245898 + MIR SINE MIR 24 260 -2 264 319 101 22 chr1 37947771 37947909 -244245755 + L3 LINE CR1 1146 1294 -283 3839 193 49 53 chr1 37947911 37948976 -244244688 - MER97c DNA MER1_type? -3 1087 27 421 259 12 40 chr1 37949020 37949190 -244244474 + L3 LINE CR1 1346 1576 -1 2664 223 81 38 chr1 37950222 37951192 -244242472 + Charlie7 DNA MER1_type 1596 2607 -5 333 257 22 59 chr1 37951401 37951537 -244242127 + L2 LINE L2 2960 3090 -182 798 293 72 7 chr1 37951794 37952084 -244241580 + MER102b DNA MER1_type 33 341 0 461 335 56 38 chr1 37952523 37952863 -244240801 - LTR16C LTR ERVL 0 491 146 509 344 45 11 chr1 37953001 37953407 -244240257 - ERVL LTR ERVL -3021 2743 2294 781 350 61 50 chr1 37953558 37953873 -244239791 - ERVL LTR ERVL -3834 1162 852 2285 102 0 6 chr1 37953873 37954188 -244239476 - AluSq SINE Alu 0 313 1 781 350 61 50 chr1 37954188 37955022 -244238642 - ERVL LTR ERVL -4144 852 1 474 342 66 25 chr1 37955024 37955343 -244238321 - LTR16C LTR ERVL -2 489 158 388 104 13 13 chr1 37955713 37955790 -244237874 + (TG)n Simple_repeat Simple_repeat 1 77 0 264 354 12 0 chr1 37956355 37956437 -244237227 + MIR3 SINE MIR 78 160 -48 484 311 74 33 chr1 37956510 37956754 -244236910 - MIR SINE MIR -7 255 2 190 318 79 0 chr1 37956949 37957012 -244236652 + MIR SINE MIR 178 245 -17 279 235 150 103 chr1 37957037 37957271 -244236393 + MLT1K LTR MaLR 19 263 -325 415 345 0 7 chr1 37959081 37959220 -244234444 + MIR SINE MIR 8 145 -117 655 227 76 54 chr1 37959246 37959478 -244234186 + MIR SINE MIR 2 241 -21 207 341 24 0 chr1 37959794 37959876 -244233788 + L2 LINE L2 3106 3189 -83 * 238 286 9 30 chr1 37959872 37959989 -244233675 + MIR SINE MIR 8 117 -120 303 109 164 0 chr1 37960040 37960095 -244233569 - MER5A DNA MER1_type -77 112 49 446 244 150 0 chr1 37960190 37960317 -244233347 + MIR SINE MIR 109 254 -8 386 281 45 0 chr1 37960341 37960430 -244233234 + L2 LINE L2 3180 3272 0 293 344 39 16 chr1 37961173 37961301 -244232363 + L2 LINE L2 3138 3268 -4 342 232 73 12 chr1 37961483 37961565 -244232099 - MIR SINE MIR -113 149 63 2012 99 3 11 chr1 37961934 37962239 -244231425 - AluSp SINE Alu 0 303 1 503 240 27 20 chr1 37962240 37962386 -244231278 - MER103 DNA DNA -12 154 8 183 42 0 0 chr1 37962394 37962418 -244231246 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 291 233 86 60 chr1 37963194 37963310 -244230354 - MLT1H LTR MaLR -16 526 408 304 302 9 28 chr1 37963393 37963499 -244230165 - MLT1H LTR MaLR -341 208 105 574 181 76 82 chr1 37964947 37965118 -244228546 + MIR SINE MIR 29 198 -64 1639 231 87 102 chr1 37965120 37965670 -244227994 + MLT1E LTR MaLR 1 593 0 417 287 63 35 chr1 37965733 37965876 -244227788 - MIR SINE MIR -105 157 11 1398 177 127 36 chr1 37966184 37966546 -244227118 + MSTD LTR MaLR 1 395 -1 572 241 25 43 chr1 37967650 37967812 -244225852 - MER5B DNA MER1_type -1 177 19 1171 144 16 21 chr1 37968478 37968665 -244224999 - MER5A DNA MER1_type -3 186 1 189 107 0 0 chr1 37968692 37968720 -244224944 + (TG)n Simple_repeat Simple_repeat 2 29 0 644 306 45 54 chr1 37968773 37969015 -244224649 - MIR SINE MIR -1 261 22 428 326 0 0 chr1 37969043 37969172 -244224492 - L2 LINE L2 -9 3304 3176 231 266 62 0 chr1 37969851 37969915 -244223749 + L2 LINE L2 3205 3272 0 1754 120 76 7 chr1 37970316 37970592 -244223072 - AluSx SINE Alu -17 295 1 698 248 7 0 chr1 37971264 37971413 -244222251 + MIR SINE MIR 32 181 -81 238 264 0 0 chr1 37971486 37971539 -244222125 - L2 LINE L2 0 3313 3261 231 341 102 12 chr1 37972684 37972851 -244220813 - L2 LINE L2 -1514 1800 1619 291 140 0 0 chr1 37972851 37972901 -244220763 + (TG)n Simple_repeat Simple_repeat 1 50 0 196 53 53 0 chr1 37973001 37973039 -244220625 + (TTTAA)n Simple_repeat Simple_repeat 2 41 0 2033 111 0 3 chr1 37973039 37973327 -244220337 - AluSg SINE Alu -23 287 1 539 308 81 15 chr1 37973327 37973525 -244220139 - MIR SINE MIR -3 259 49 619 257 168 13 chr1 37973578 37973804 -244219860 - MIR SINE MIR 0 262 2 782 274 31 31 chr1 37975422 37975476 -244218188 - MIR SINE MIR 0 262 209 2095 176 113 22 chr1 37975476 37975935 -244217729 + MLT1D LTR MaLR 1 501 -4 782 274 31 31 chr1 37975935 37976139 -244217525 - MIR SINE MIR -52 210 4 1022 187 16 0 chr1 37977113 37977295 -244216369 + MER5A DNA MER1_type 1 185 -4 352 310 90 14 chr1 37978461 37978606 -244215058 - MIR SINE MIR -70 192 37 245 236 194 79 chr1 37978847 37979012 -244214652 - HAL1 LINE L1 -23 2484 2301 1152 256 113 53 chr1 37979123 37979767 -244213897 - HAL1 LINE L1 -423 2084 1402 747 279 50 76 chr1 37979794 37980501 -244213163 - HAL1 LINE L1 -1193 1314 627 1373 114 5 0 chr1 37980725 37980926 -244212738 - AluSg/x SINE Alu -16 296 95 321 260 31 31 chr1 37980929 37981025 -244212639 - HAL1 LINE L1 -1968 539 444 347 330 52 12 chr1 37981039 37981212 -244212452 - MLT1L LTR MaLR -18 597 418 563 274 157 0 chr1 37981287 37981440 -244212224 + MER5A DNA MER1_type 13 189 0 339 235 29 103 chr1 37981589 37981725 -244211939 - MLT1L LTR MaLR -456 159 34 310 290 109 49 chr1 37981956 37982139 -244211525 - HAL1 LINE L1 -2311 196 3 288 53 0 0 chr1 37982223 37982261 -244211403 + (TG)n Simple_repeat Simple_repeat 2 39 0 202 180 40 0 chr1 37982269 37982319 -244211345 + (CAGAGA)n Simple_repeat Simple_repeat 3 54 0 312 215 77 54 chr1 37983597 37983727 -244209937 + L1ME4a LINE L1 5980 6112 -9 1233 110 34 64 chr1 37984276 37984512 -244209152 + AluSg/x SINE Alu 84 312 0 534 231 68 0 chr1 37985537 37985654 -244208010 - MIR SINE MIR -17 245 121 1083 251 149 17 chr1 37985834 37986244 -244207420 + LTR16C LTR ERVL 2 465 -26 181 259 17 52 chr1 37986731 37986789 -244206875 + MIR SINE MIR 91 146 -116 369 248 50 37 chr1 37987643 37987804 -244205860 + LTR33 LTR ERVL 109 271 -250 302 192 0 55 chr1 37988238 37988311 -244205353 + AluSc SINE Alu 94 162 -137 263 186 0 0 chr1 37988310 37988353 -244205311 + LTR33 LTR ERVL 479 521 0 * 258 136 0 0 chr1 37988770 37988814 -244204850 + (T)n Simple_repeat Simple_repeat 1 44 0 1445 166 46 33 chr1 37989756 37989878 -244203786 + AluJo SINE Alu 1 120 -192 288 77 0 0 chr1 37989878 37989917 -244203747 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1445 166 46 33 chr1 37989917 37990101 -244203563 + AluJo SINE Alu 120 311 -1 539 198 58 25 chr1 37990371 37990492 -244203172 - L2 LINE L2 -1 3312 3188 315 148 99 25 chr1 37990509 37990590 -244203074 - MIR SINE MIR -74 188 102 419 262 137 11 chr1 37990862 37991045 -244202619 + MIR SINE MIR 51 256 -6 1115 279 97 11 chr1 37994839 37995284 -244198380 - MLT1G1 LTR MaLR -38 557 75 240 305 49 0 chr1 37995769 37995851 -244197813 + MLT1K LTR MaLR 494 579 -9 1013 163 0 24 chr1 37995955 37996121 -244197543 - AluSg/x SINE Alu -11 301 140 322 228 38 0 chr1 37996143 37996222 -244197442 - MIR SINE MIR -71 191 110 197 205 0 0 chr1 37997007 37997046 -244196618 - L2 LINE L2 -7 3306 3268 857 204 132 56 chr1 37998076 37998510 -244195154 - MLT1B LTR MaLR -5 451 1 3284 109 124 0 chr1 37998949 37999471 -244194193 + LTR49 LTR ERV1 9 595 0 1801 203 60 18 chr1 38000339 38000787 -244192877 - MLT1C LTR MaLR 0 467 1 264 293 193 7 chr1 38000787 38000937 -244192727 - L2 LINE L2 -195 3077 2900 505 332 34 14 chr1 38001027 38001322 -244192342 - L2 LINE L2 -527 2787 2487 630 221 56 94 chr1 38002144 38002357 -244191307 - MIR SINE MIR -35 227 23 313 259 143 70 chr1 38004182 38004483 -244189181 - MLT1H LTR MaLR -16 533 211 417 39 0 0 chr1 38005000 38005051 -244188613 + (TG)n Simple_repeat Simple_repeat 2 52 0 678 273 76 32 chr1 38005692 38005766 -244187898 - MLT1I LTR MaLR -6 403 334 2560 71 0 0 chr1 38005766 38006075 -244187589 + AluY SINE Alu 3 311 0 678 273 76 32 chr1 38006075 38006353 -244187311 - MLT1I LTR MaLR -75 334 1 1628 189 22 26 chr1 38007989 38008302 -244185362 + AluJo SINE Alu 1 312 0 298 245 194 10 chr1 38008349 38008447 -244185217 + MIR SINE MIR 47 162 -100 252 250 83 10 chr1 38008470 38008566 -244185098 - L2 LINE L2 -636 2678 2576 1306 204 56 58 chr1 38008566 38008959 -244184705 - MLT2C1 LTR ERVL 0 397 6 253 214 34 45 chr1 38009216 38009305 -244184359 + MIR SINE MIR 123 210 -52 189 326 11 21 chr1 38009569 38009664 -244184000 + L2 LINE L2 2983 3076 -196 521 302 98 25 chr1 38009978 38010213 -244183451 - MIR SINE MIR -6 256 5 300 27 0 0 chr1 38010275 38010312 -244183352 + (CA)n Simple_repeat Simple_repeat 2 38 0 277 298 19 29 chr1 38011100 38011204 -244182460 + GA-rich Low_complexity Low_complexity 4 106 0 2298 90 3 0 chr1 38011716 38012004 -244181660 + AluSc SINE Alu 1 289 -20 697 268 16 0 chr1 38012077 38012260 -244181404 - Charlie1 DNA MER1_type -2519 242 57 404 323 36 15 chr1 38014619 38014814 -244178850 + MLT1K LTR MaLR 24 222 -366 875 204 52 46 chr1 38014817 38015177 -244178487 + MSTD LTR MaLR 3 396 0 6430 206 44 109 chr1 38015179 38015954 -244177710 + MSTD-int LTR MaLR 2 826 -909 888 174 32 0 chr1 38015954 38016109 -244177555 + Tigger3(Golem) DNA MER2_type 2869 3028 -1 6430 206 44 109 chr1 38016109 38017035 -244176629 + MSTD-int LTR MaLR 826 1735 0 1747 177 102 8 chr1 38017035 38017397 -244176267 + MSTD LTR MaLR 1 396 0 322 246 46 97 chr1 38017672 38017727 -244175937 + MLT1K LTR MaLR 421 477 -111 1314 146 4 49 chr1 38017727 38017953 -244175711 + MER20 DNA MER1_type 4 219 0 322 246 46 97 chr1 38017953 38018072 -244175592 + MLT1K LTR MaLR 477 586 -2 2267 140 137 9 chr1 38018999 38019436 -244174228 + MLT1D LTR MaLR 6 498 -7 1574 139 130 50 chr1 38019531 38019837 -244173827 - MLT1A1 LTR MaLR 0 365 28 270 0 0 0 chr1 38019837 38019867 -244173797 + (TA)n Simple_repeat Simple_repeat 2 31 0 1574 139 130 50 chr1 38019867 38019898 -244173766 - MLT1A1 LTR MaLR -337 28 1 253 226 48 24 chr1 38020076 38020160 -244173504 - MIR SINE MIR -32 230 145 269 333 49 16 chr1 38020246 38020369 -244173295 - MIR SINE MIR -113 149 23 328 276 0 0 chr1 38020979 38021055 -244172609 + MLT1J LTR MaLR 124 199 -312 399 240 53 47 chr1 38021121 38021271 -244172393 + MLT1J2 LTR MaLR 297 447 -3 200 281 122 0 chr1 38022408 38022490 -244171174 + MIR SINE MIR 139 230 -32 732 210 38 21 chr1 38022499 38022685 -244170979 + MIR SINE MIR 15 203 -59 339 288 114 53 chr1 38022778 38023059 -244170605 - L1M4 LINE L1 -1990 4156 3859 1873 159 188 55 chr1 38023165 38023244 -244170420 - MLT2B1 LTR ERVL -8 512 445 1416 24 0 0 chr1 38023244 38023409 -244170255 - L1PA5 LINE L1 -8 6146 5982 1873 159 188 55 chr1 38023409 38023781 -244169883 - MLT2B1 LTR ERVL -75 445 1 239 326 36 25 chr1 38024320 38024516 -244169148 - L1M4 LINE L1 -2314 3832 3635 26 0 0 0 chr1 38024755 38024781 -244168883 + AT_rich Low_complexity Low_complexity 1 26 0 2657 52 0 0 chr1 38025065 38025374 -244168290 + AluY SINE Alu 1 309 -2 22 0 0 0 chr1 38025374 38025396 -244168268 + AT_rich Low_complexity Low_complexity 1 22 0 643 286 122 23 chr1 38026591 38027138 -244166526 - L2 LINE L2 0 3313 2690 11294 204 58 22 chr1 38027142 38030951 -244162713 + L1MDa LINE L1 18 3966 -2574 423 70 43 35 chr1 38030987 38031102 -244162562 + (TTATA)n Simple_repeat Simple_repeat 1 116 0 762 205 29 48 chr1 38031129 38031257 -244162407 + L1MDa LINE L1 3960 4084 -2456 695 235 184 24 chr1 38031257 38031512 -244162152 + AluY SINE Alu 5 300 -1 762 205 29 48 chr1 38031512 38031593 -244162071 + L1MDa LINE L1 4084 4165 -2375 * 7027 244 33 21 chr1 38031591 38033127 -244160537 - L1MEc LINE L1 -1671 4544 2973 1755 183 24 3 chr1 38033127 38033422 -244160242 - AluJb SINE Alu -10 302 2 7027 244 33 21 chr1 38033422 38034063 -244159601 - L1MEc LINE L1 -3242 2973 2341 4334 201 31 44 chr1 38034058 38035081 -244158583 - L1MCb LINE L1 -4856 1189 649 * 2340 39 78 0 chr1 38035081 38035365 -244158299 - AluY SINE Alu -4 307 2 4334 201 31 44 chr1 38035365 38036003 -244157661 - L1MCb LINE L1 -5396 649 4 2779 186 92 38 chr1 38036022 38036992 -244156672 - L1MEc LINE L1 -3859 2356 1365 465 216 92 123 chr1 38037175 38037718 -244155946 - L1ME4a LINE L1 -210 5911 5386 332 318 9 27 chr1 38037745 38037855 -244155809 - MLT1K LTR MaLR -430 158 51 2148 118 0 37 chr1 38037910 38038233 -244155431 + AluSx SINE Alu 1 311 -1 509 295 234 13 chr1 38039363 38039739 -244153925 - L2 LINE L2 -10 3303 2845 447 282 35 12 chr1 38040895 38041065 -244152599 + MIR3 SINE MIR 14 187 -21 612 301 94 35 chr1 38041767 38042109 -244151555 - L2 LINE L2 0 3313 2952 401 285 93 31 chr1 38042895 38043088 -244150576 + MIR SINE MIR 48 252 -10 360 322 91 31 chr1 38043403 38043822 -244149842 + HAL1b LINE L1 249 692 -656 552 323 64 20 chr1 38044328 38044734 -244148930 + L1ME4a LINE L1 4441 4864 -1282 312 335 28 28 chr1 38045111 38045290 -244148374 + L1ME4a LINE L1 5255 5433 -2375 365 302 16 0 chr1 38045366 38045495 -244148169 + L1ME4a LINE L1 5586 5716 -405 542 231 15 0 chr1 38045536 38045666 -244147998 - MIR SINE MIR -13 249 118 241 232 93 121 chr1 38045670 38046067 -244147597 + L1ME4a LINE L1 5734 6119 -2 427 211 66 107 chr1 38046884 38047173 -244146491 - L2 LINE L2 -50 3263 2987 820 0 20 0 chr1 38047924 38048024 -244145640 + (TCTA)n Simple_repeat Simple_repeat 3 104 0 2182 120 0 0 chr1 38048025 38048308 -244145356 - AluSx SINE Alu -29 283 1 311 240 29 29 chr1 38048858 38048962 -244144702 - L2 LINE L2 -237 3035 2932 794 258 65 8 chr1 38048964 38049212 -244144452 + MIR SINE MIR 1 262 0 313 280 53 45 chr1 38050863 38050960 -244142704 + L2 LINE L2 3180 3280 -33 1712 152 115 93 chr1 38050960 38051454 -244142210 + MLT1D LTR MaLR 1 505 0 313 280 53 45 chr1 38051454 38051488 -244142176 + L2 LINE L2 3280 3312 -1 445 268 58 89 chr1 38051881 38052172 -244141492 - L1MC4a LINE L1 -106 6015 5732 1033 267 44 56 chr1 38053961 38054302 -244139362 + MLT1J LTR MaLR 1 337 -174 226 260 27 14 chr1 38055056 38055129 -244138535 + MLT1I LTR MaLR 63 136 -273 187 289 154 34 chr1 38055852 38056001 -244137663 + L2 LINE L2 2711 2877 -437 733 173 67 17 chr1 38056875 38057054 -244136610 + MER53 DNA DNA 2 189 0 333 177 0 0 chr1 38057154 38057216 -244136448 + MIR SINE MIR 164 225 -37 241 282 81 32 chr1 38057504 38057628 -244136036 + L2 LINE L2 3142 3271 -1 199 359 52 36 chr1 38057784 38057976 -244135688 + MIR SINE MIR 43 237 -25 215 259 53 63 chr1 38059292 38059481 -244134183 + L2 LINE L2 2550 2736 -578 330 281 0 0 chr1 38060189 38060278 -244133386 - MIR3 SINE MIR -39 169 81 577 212 77 97 chr1 38061505 38061764 -244131900 + MIR SINE MIR 4 257 -5 386 293 133 0 chr1 38062105 38062266 -244131398 + MER5A DNA MER1_type 4 188 -1 260 314 25 25 chr1 38062307 38062428 -244131236 + L2 LINE L2 3138 3258 -14 327 318 34 20 chr1 38062680 38062828 -244130836 - L3 LINE CR1 -1148 429 280 183 386 24 24 chr1 38062914 38063041 -244130623 - L3 LINE CR1 -1403 174 48 377 202 98 109 chr1 38063549 38063742 -244129922 + MLT1L LTR MaLR 2 192 -423 579 264 82 34 chr1 38063895 38064103 -244129561 + MLT1L LTR MaLR 382 599 -16 208 167 0 24 chr1 38064228 38064270 -244129394 + (CA)n Simple_repeat Simple_repeat 2 42 0 1190 242 22 72 chr1 38064744 38065190 -244128474 - LTR16A LTR ERVL 0 450 27 217 241 138 0 chr1 38065242 38065329 -244128335 + L2 LINE L2 3170 3268 -4 1465 266 147 38 chr1 38065588 38066593 -244127071 + L1ME4a LINE L1 5009 6121 0 517 60 12 24 chr1 38067286 38067369 -244126295 + (TAGA)n Simple_repeat Simple_repeat 3 84 0 427 208 66 107 chr1 38068120 38068409 -244125255 + L2 LINE L2 2987 3263 -50 252 229 93 121 chr1 38069226 38069623 -244124041 - L1ME4a LINE L1 -2 6119 5734 542 231 15 0 chr1 38069627 38069757 -244123907 + MIR SINE MIR 118 249 -13 365 302 16 0 chr1 38069798 38069927 -244123737 - L1ME4a LINE L1 -405 5716 5586 312 335 28 28 chr1 38070003 38070182 -244123482 - L1ME4a LINE L1 -2375 5433 5255 573 320 64 20 chr1 38070559 38070965 -244122699 - L1ME4a LINE L1 -1282 4864 4441 360 322 91 31 chr1 38071471 38071890 -244121774 - HAL1b LINE L1 -656 692 249 401 285 93 31 chr1 38072205 38072398 -244121266 - MIR SINE MIR -10 252 48 612 301 94 35 chr1 38073184 38073526 -244120138 + L2 LINE L2 2952 3313 0 447 282 35 12 chr1 38074228 38074398 -244119266 - MIR3 SINE MIR -21 187 14 501 298 234 13 chr1 38075554 38075930 -244117734 + L2 LINE L2 2845 3303 -10 2148 118 0 37 chr1 38077060 38077383 -244116281 - AluSx SINE Alu -1 311 1 332 318 9 27 chr1 38077438 38077548 -244116116 + MLT1K LTR MaLR 51 158 -430 465 216 92 123 chr1 38077575 38078118 -244115546 + L1ME4a LINE L1 5386 5911 -210 1056 152 55 74 chr1 38078296 38078552 -244115112 + L1MCa LINE L1 1371 1621 -4805 1876 127 45 14 chr1 38079245 38079536 -244114128 - AluJb SINE Alu -12 300 1 322 330 51 11 chr1 38080616 38080792 -244112872 - MIR SINE MIR -35 227 45 182 280 0 0 chr1 38080844 38080894 -244112770 + L2 LINE L2 2922 2971 -343 183 216 98 0 chr1 38081100 38081151 -244112513 - MIR SINE MIR -122 140 85 615 204 53 53 chr1 38081218 38081370 -244112294 + MLT1J2 LTR MaLR 3 154 -296 523 286 74 0 chr1 38081415 38081590 -244112074 + MLT1J2 LTR MaLR 229 416 -34 3705 291 108 14 chr1 38082202 38084163 -244109501 - L2 LINE L2 0 3313 1083 518 278 121 5 chr1 38084723 38084921 -244108743 - MIR SINE MIR -38 224 4 644 290 37 22 chr1 38086623 38086892 -244106772 - L1ME4a LINE L1 -165 5956 5684 655 323 19 8 chr1 38087003 38087260 -244106404 - MIR SINE MIR 0 262 3 1005 246 95 35 chr1 38087373 38087808 -244105856 + MLT1H LTR MaLR 20 541 -8 318 50 0 0 chr1 38088469 38088509 -244105155 + (TTCA)n Simple_repeat Simple_repeat 3 42 0 203 231 0 0 chr1 38088550 38088589 -244105075 - L2 LINE L2 -98 3174 3136 1195 99 0 117 chr1 38088687 38088894 -244104770 - AluSg/x SINE Alu 0 330 153 2646 48 0 6 chr1 38088894 38089207 -244104457 - AluY SINE Alu 0 311 1 1195 99 0 117 chr1 38089207 38089260 -244104404 - AluSg/x SINE Alu -177 153 95 475 336 44 22 chr1 38090010 38090281 -244103383 - L2 LINE L2 -480 2834 2558 * 920 251 16 16 chr1 38090276 38090523 -244103141 + MIR SINE MIR 12 258 -4 256 262 58 76 chr1 38090845 38091017 -244102647 - MIR SINE MIR -74 188 20 280 320 41 8 chr1 38091326 38091448 -244102216 - MIR SINE MIR -36 226 101 485 293 29 33 chr1 38091713 38091957 -244101707 - MIR SINE MIR 0 262 18 2213 133 0 0 chr1 38092229 38092538 -244101126 + AluSc SINE Alu 1 309 0 610 101 8 17 chr1 38092540 38092659 -244101005 + (GGAA)n Simple_repeat Simple_repeat 3 120 0 258 350 59 25 chr1 38092678 38092797 -244100867 + MIR SINE MIR 42 163 -63 435 213 91 119 chr1 38092797 38093040 -244100624 - MLT1G1 LTR MaLR -2 593 330 532 234 74 55 chr1 38093599 38093843 -244099821 - MLT1G1 LTR MaLR -366 229 2 299 296 12 0 chr1 38093866 38093947 -244099717 + MIR SINE MIR 181 262 0 789 347 60 22 chr1 38094617 38095167 -244098497 + L2 LINE L2 2736 3302 -11 1769 227 121 23 chr1 38095866 38096338 -244097326 + MLT1H LTR MaLR 5 522 -27 551 299 87 17 chr1 38097478 38097709 -244095955 + MIR SINE MIR 10 256 -6 385 327 74 26 chr1 38098078 38098347 -244095317 - MLT1J LTR MaLR 0 511 230 255 31 0 0 chr1 38098440 38098472 -244095192 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 279 206 14 14 chr1 38098581 38098654 -244095010 - MLT1L LTR MaLR -538 77 5 300 53 0 0 chr1 38099262 38099300 -244094364 + (CTG)n Simple_repeat Simple_repeat 1 38 0 751 286 124 14 chr1 38099300 38099656 -244094008 + LTR16A1 LTR ERVL 63 457 0 302 288 84 71 chr1 38099821 38100144 -244093520 + L2 LINE L2 198 524 -2790 246 296 178 49 chr1 38100165 38100513 -244093151 + L1MC4a LINE L1 5575 5967 -1841 366 206 93 21 chr1 38101237 38101334 -244092330 + MIR SINE MIR 12 115 -147 278 181 264 0 chr1 38101343 38101415 -244092249 + MER91C DNA MER1_type 20 110 -30 562 303 7 0 chr1 38101434 38101586 -244092078 + MIR SINE MIR 108 260 -2 228 271 0 0 chr1 38101587 38101646 -244092018 + (CACCAT)n Simple_repeat Simple_repeat 1 59 0 211 308 103 9 chr1 38102917 38103024 -244090640 - MIR SINE MIR -32 230 114 227 207 40 55 chr1 38103142 38103228 -244090436 + MLT1J2 LTR MaLR 83 166 -243 293 344 25 32 chr1 38103292 38103449 -244090215 + MLT1J2 LTR MaLR 264 419 -31 512 293 84 23 chr1 38104131 38104346 -244089318 - MIR SINE MIR -27 235 8 258 32 0 0 chr1 38104648 38104679 -244088985 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 442 248 77 93 chr1 38104752 38105063 -244088601 + MLT1I LTR MaLR 100 405 -4 227 256 0 0 chr1 38105539 38105582 -244088082 + L2 LINE L2 3008 3050 -263 429 299 29 15 chr1 38105988 38106125 -244087539 + L2 LINE L2 3134 3272 0 390 292 14 10 chr1 38106716 38106848 -244086816 + MIR SINE MIR 23 152 -56 1025 210 16 47 chr1 38107079 38107139 -244086525 + MIR SINE MIR 12 72 -190 1990 80 4 8 chr1 38107139 38107403 -244086261 - AluY SINE Alu 0 311 49 1025 210 16 47 chr1 38107403 38107599 -244086065 + MIR SINE MIR 72 260 -2 546 259 13 7 chr1 38108855 38109010 -244084654 + MIR SINE MIR 15 166 -62 613 302 31 47 chr1 38110615 38110933 -244082731 + MLT1K LTR MaLR 275 587 -1 195 162 0 0 chr1 38111251 38111288 -244082376 + (TCCA)n Simple_repeat Simple_repeat 1 37 0 3583 233 50 17 chr1 38112348 38113874 -244079790 + L1ME2 LINE L1 2005 3585 -2797 2546 191 12 10 chr1 38113874 38114377 -244079287 + L1MB4 LINE L1 5677 6180 0 2632 218 57 40 chr1 38114377 38115614 -244078050 + L1ME2 LINE L1 5131 6390 -10 23 0 0 0 chr1 38115622 38115645 -244078019 + AT_rich Low_complexity Low_complexity 1 23 0 1372 314 98 39 chr1 38115670 38116722 -244076942 - L2 LINE L2 -339 2975 1862 196 341 0 24 chr1 38117073 38117155 -244076509 - L2 LINE L2 -2213 1101 1022 620 280 17 23 chr1 38117356 38117535 -244076129 + MIR3 SINE MIR 31 208 0 582 272 76 72 chr1 38118427 38118717 -244074947 - MLT1K LTR MaLR -8 580 290 258 95 0 0 chr1 38118724 38118766 -244074898 + (TC)n Simple_repeat Simple_repeat 1 42 0 487 343 42 39 chr1 38118766 38119052 -244074612 - MLT1K LTR MaLR -300 288 2 2414 134 108 5 chr1 38119879 38120267 -244073397 - MSTA LTR MaLR 0 428 1 9667 174 37 2 chr1 38120267 38121863 -244071801 - MSTA-int LTR MaLR 0 1651 1 255 91 0 0 chr1 38121864 38121897 -244071767 - MSTA LTR MaLR -395 33 1 1240 211 43 10 chr1 38122066 38122370 -244071294 + L1M4c LINE L1 4076 4389 -1993 697 199 37 0 chr1 38122370 38122506 -244071158 - MLT1A1 LTR MaLR 0 365 225 692 176 8 0 chr1 38122514 38122633 -244071031 + THE1-int LTR MaLR 1337 1456 -124 762 205 19 93 chr1 38122658 38122863 -244070801 - MLT1A1 LTR MaLR -171 194 5 3625 196 24 29 chr1 38122868 38123776 -244069888 + L1M4c LINE L1 4386 5289 -1093 278 266 36 57 chr1 38123773 38123965 -244069699 + L1MEc LINE L1 2214 2401 -4186 * 1829 262 129 36 chr1 38123969 38124552 -244069112 + L1MEc LINE L1 6 642 -5767 506 155 23 50 chr1 38124665 38124798 -244068866 + MLT1D LTR MaLR 411 503 -2 1080 258 78 50 chr1 38124811 38125295 -244068369 + L1MEc LINE L1 3863 4360 -2046 15744 229 36 12 chr1 38125307 38131620 -244062044 - L1PA16 LINE L1 0 6817 2 1681 255 44 21 chr1 38131626 38132237 -244061427 + L1MEc LINE L1 4352 4976 -1430 743 187 41 12 chr1 38132252 38132367 -244061297 + L1MD2 LINE L1 6182 6305 -54 1387 211 9 19 chr1 38132367 38132684 -244060980 - L1MA10 LINE L1 -4 6330 6017 743 187 41 12 chr1 38132684 38132739 -244060925 + L1MD2 LINE L1 6305 6357 -2 645 263 65 76 chr1 38132750 38132965 -244060699 + L1M4 LINE L1 2110 2319 -3827 1846 168 0 49 chr1 38132965 38133293 -244060371 - AluSx SINE Alu 0 312 1 645 263 65 76 chr1 38133293 38133511 -244060153 + L1M4 LINE L1 2319 2538 -3608 435 19 0 0 chr1 38133541 38133593 -244060071 + (TA)n Simple_repeat Simple_repeat 2 53 0 796 267 38 3 chr1 38133607 38133895 -244059769 + L1M4 LINE L1 2675 2972 -3174 3251 203 38 1 chr1 38133962 38134704 -244058960 + L1M4 LINE L1 1 2047 -4518 384 327 86 30 chr1 38134840 38134990 -244058674 - L2 LINE L2 -2197 1117 977 318 26 0 0 chr1 38134990 38135029 -244058635 + (TG)n Simple_repeat Simple_repeat 1 39 0 384 327 86 30 chr1 38135029 38135251 -244058413 - L2 LINE L2 -2337 977 724 2887 88 8 3 chr1 38135255 38135628 -244058036 - THE1C LTR MaLR 0 375 1 2150 141 43 27 chr1 38135641 38136017 -244057647 - MLT1B LTR MaLR -8 382 1 529 296 73 66 chr1 38136018 38136443 -244057221 - L2 LINE L2 -2592 722 295 1033 147 0 0 chr1 38136617 38136773 -244056891 - L1PA15 LINE L1 -1 6164 6009 3320 129 28 2 chr1 38137420 38137922 -244055742 - L1PA16 LINE L1 -2 6164 5650 5309 34 0 2 chr1 38138049 38138637 -244055027 - L1PA5 LINE L1 -4 6150 5564 274 250 185 9 chr1 38138664 38138772 -244054892 - L2 LINE L2 -33 3239 3113 2056 58 39 0 chr1 38139025 38139282 -244054382 + L1PA13 LINE L1 5896 6162 -1 343 322 79 0 chr1 38139427 38139604 -244054060 + L2 LINE L2 1527 1717 -1597 423 332 45 5 chr1 38139802 38140004 -244053660 + L2 LINE L2 2544 2753 -561 454 279 32 38 chr1 38140169 38140327 -244053337 - L2 LINE L2 -531 2783 2627 213 333 0 11 chr1 38140336 38140426 -244053238 - L2 LINE L2 -803 2511 2423 4791 101 1 3 chr1 38140447 38141104 -244052560 + L1PA13 LINE L1 5488 6143 -20 1033 280 91 103 chr1 38141362 38142599 -244051065 + L2 LINE L2 951 2172 -1142 942 234 25 0 chr1 38142616 38142813 -244050851 + MLT1H LTR MaLR 1 202 -347 247 328 58 87 chr1 38142975 38143286 -244050378 + L2 LINE L2 2882 3183 -89 1031 213 16 103 chr1 38144262 38144448 -244049216 + MLT1J1 LTR MaLR 1 149 -297 869 151 0 7 chr1 38144448 38144600 -244049064 + L1MB3 LINE L1 6032 6182 -1 1031 213 16 103 chr1 38144600 38144733 -244048931 + MLT1J1 LTR MaLR 149 292 -154 1693 231 75 33 chr1 38144802 38145365 -244048299 - MLT1F1 LTR MaLR -3 564 1 408 250 71 14 chr1 38146524 38146664 -244047000 - MIR3 SINE MIR -7 201 54 432 264 82 23 chr1 38146699 38146919 -244046745 - L2 LINE L2 0 3313 3081 398 253 173 13 chr1 38148007 38148157 -244045507 - MER5A DNA MER1_type -6 183 10 505 287 92 11 chr1 38148353 38148527 -244045137 + MER91A DNA MER1_type 6 193 -3 553 230 176 115 chr1 38148880 38149271 -244044393 - L2 LINE L2 0 3313 2899 476 150 0 143 chr1 38149494 38149634 -244044030 - L2 LINE L2 0 3313 3194 5734 138 42 12 chr1 38149998 38151146 -244042518 + L1MA4 LINE L1 5114 6289 -11 194 388 0 0 chr1 38151218 38151285 -244042379 + L2 LINE L2 3202 3268 -4 213 333 0 0 chr1 38151425 38151491 -244042173 + L2 LINE L2 3247 3312 -1 1054 200 42 114 chr1 38152599 38153070 -244040594 + MLT1C LTR MaLR 19 467 0 204 381 10 0 chr1 38153073 38153170 -244040494 - MIR SINE MIR -122 140 43 380 338 7 0 chr1 38153453 38153589 -244040075 + L2 LINE L2 3134 3270 -2 23 0 0 0 chr1 38153979 38154002 -244039662 + AT_rich Low_complexity Low_complexity 1 23 0 545 287 44 75 chr1 38154135 38154634 -244039030 + L1MC4a LINE L1 4903 5389 -975 1246 138 69 11 chr1 38154634 38154894 -244038770 - L1MA8 LINE L1 -2 6289 6015 545 287 44 75 chr1 38154894 38155096 -244038568 + L1MC4a LINE L1 5389 5596 -768 756 289 92 16 chr1 38155885 38156189 -244037475 + L1MC4a LINE L1 5569 5895 -1913 637 258 0 6 chr1 38158197 38158356 -244035308 + MIR SINE MIR 94 251 -11 502 241 128 27 chr1 38158404 38158591 -244035073 - MIR SINE MIR -55 207 2 794 198 44 6 chr1 38158857 38159039 -244034625 - MIR SINE MIR -71 191 3 363 265 146 13 chr1 38159289 38159440 -244034224 + MIR3 SINE MIR 33 203 -5 270 220 42 144 chr1 38159890 38160008 -244033656 - L2 LINE L2 0 3272 3167 393 39 0 0 chr1 38161346 38161397 -244032267 + (GA)n Simple_repeat Simple_repeat 2 52 0 284 208 42 14 chr1 38161404 38161476 -244032188 - MIR SINE MIR -150 112 39 1215 221 36 70 chr1 38162424 38162809 -244030855 + MLT1A2 LTR MaLR 1 372 -2 597 269 157 19 chr1 38163048 38163264 -244030400 + MIR SINE MIR 17 262 0 228 211 158 90 chr1 38163351 38163441 -244030223 + MLT1J LTR MaLR 236 339 -172 213 39 0 0 chr1 38163441 38163467 -244030197 + (TA)n Simple_repeat Simple_repeat 2 27 0 228 211 158 90 chr1 38163467 38163509 -244030155 + MLT1J LTR MaLR 339 377 -134 418 176 25 101 chr1 38163524 38163643 -244030021 - MIR SINE MIR -107 155 46 214 225 188 0 chr1 38164180 38164260 -244029404 - MIR3 SINE MIR -8 200 106 505 268 115 21 chr1 38164282 38164517 -244029147 - MIR SINE MIR -5 257 1 954 225 61 0 chr1 38165159 38165390 -244028274 + MIR SINE MIR 16 260 -2 814 193 10 51 chr1 38166292 38166489 -244027175 + MER5A DNA MER1_type 1 189 0 870 210 17 6 chr1 38166496 38166672 -244026992 + MER5B DNA MER1_type 1 178 0 194 261 0 31 chr1 38167516 38167581 -244026083 - MIR SINE MIR -14 248 186 691 243 131 63 chr1 38167632 38167999 -244025665 + MLT1I LTR MaLR 16 407 -2 2458 132 18 66 chr1 38168038 38168492 -244025172 - Tigger2a DNA MER2_type -2 432 1 424 260 124 28 chr1 38168492 38168669 -244024995 - MIR SINE MIR -62 200 7 578 299 82 0 chr1 38170045 38170252 -244023412 - MER58A DNA MER1_type 0 224 1 792 311 96 57 chr1 38170707 38171735 -244021929 + L2 LINE L2 2258 3313 0 182 118 29 0 chr1 38171783 38171817 -244021847 + CT-rich Low_complexity Low_complexity 6 40 0 1849 152 36 12 chr1 38171888 38172224 -244021440 - L1MB1 LINE L1 0 6168 5825 339 239 65 0 chr1 38172382 38172474 -244021190 + MIR SINE MIR 111 208 -54 348 239 91 0 chr1 38172595 38172683 -244020981 + L2 LINE L2 3193 3288 -25 1723 135 0 19 chr1 38172834 38173116 -244020548 + AluSx SINE Alu 42 312 0 400 315 100 85 chr1 38173747 38174087 -244019577 + L2 LINE L2 2927 3271 -1 691 306 85 20 chr1 38174153 38174447 -244019217 - MLT1I LTR MaLR -34 375 63 2284 97 0 19 chr1 38174564 38174875 -244018789 + AluSx SINE Alu 7 311 -1 372 265 23 30 chr1 38175484 38175616 -244018048 + Charlie8 DNA MER1_type 88 218 -2199 207 0 0 0 chr1 38175766 38175789 -244017875 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 43839 33 21 1 chr1 38175835 38181861 -244011803 - L1PA3 LINE L1 -1 6154 2 278 214 0 0 chr1 38183130 38183186 -244010478 + L1MEd LINE L1 1241 1296 -4909 23 33 0 0 chr1 38183362 38183392 -244010272 + AT_rich Low_complexity Low_complexity 1 30 0 851 301 79 32 chr1 38183479 38184596 -244009068 + L1MEd LINE L1 2144 3290 -2925 503 175 16 71 chr1 38184601 38184727 -244008937 - Tigger1 DNA MER2_type -2129 289 171 1673 161 81 0 chr1 38184728 38184989 -244008675 + AluJb SINE Alu 1 282 -30 1050 122 0 0 chr1 38185007 38185187 -244008477 + (TC)n Simple_repeat Simple_repeat 1 180 0 357 24 0 0 chr1 38185186 38185228 -244008436 + (CA)n Simple_repeat Simple_repeat 1 42 0 * 2059 126 0 7 chr1 38185246 38185531 -244008133 + AluSq SINE Alu 1 283 -30 1100 150 0 6 chr1 38185538 38185711 -244007953 - Tigger1 DNA MER2_type -2242 176 5 3010 163 100 9 chr1 38185722 38186262 -244007402 - MLT1D-int LTR MaLR -633 738 142 5471 166 9 4 chr1 38186262 38187181 -244006483 - MER49 LTR ERV1 0 923 1 3010 163 100 9 chr1 38187181 38187210 -244006454 - MLT1D-int LTR MaLR -1229 142 117 1411 44 0 22 chr1 38187288 38187469 -244006195 + L1PA11 LINE L1 5996 6172 -2 4040 259 66 19 chr1 38187479 38189131 -244004533 + L1ME3A LINE L1 2045 3746 -2469 1715 208 134 36 chr1 38189134 38190103 -244003561 + L1ME3A LINE L1 3883 4940 -1275 1716 209 65 51 chr1 38190103 38190595 -244003069 - MLT1D LTR MaLR 0 505 7 1289 224 84 32 chr1 38190607 38191045 -244002619 + L1ME3A LINE L1 4942 5402 -813 1959 165 0 0 chr1 38191045 38191342 -244002322 + AluSx SINE Alu 1 297 -15 774 255 67 29 chr1 38191342 38191689 -244001975 + L1ME3A LINE L1 5748 6100 -90 221 322 0 0 chr1 38191840 38191899 -244001765 - MIR SINE MIR -116 92 34 253 282 0 0 chr1 38192760 38192831 -244000833 - L2 LINE L2 -236 3036 2966 240 35 0 0 chr1 38193104 38193133 -244000531 + (TA)n Simple_repeat Simple_repeat 2 30 0 28 71 0 0 chr1 38193135 38193191 -244000473 + AT_rich Low_complexity Low_complexity 1 56 0 233 393 72 23 chr1 38193353 38193658 -244000006 - L2 LINE L2 -557 2757 2438 2722 110 0 0 chr1 38193675 38194039 -243999625 - THE1B LTR MaLR 0 364 1 238 267 35 103 chr1 38194451 38194511 -243999153 - MIR SINE MIR -152 110 60 804 250 39 27 chr1 38194511 38194767 -243998897 - MIR SINE MIR 0 262 4 238 267 35 103 chr1 38194767 38194822 -243998842 - MIR SINE MIR -202 60 3 25 0 0 0 chr1 38195449 38195474 -243998190 + AT_rich Low_complexity Low_complexity 1 25 0 257 323 24 63 chr1 38195832 38195959 -243997705 + L2 LINE L2 2686 2807 -507 3266 126 107 44 chr1 38195987 38196575 -243997089 - MER51A LTR ERV1 -9 625 1 196 261 22 0 chr1 38196694 38196740 -243996924 + MIR SINE MIR 8 54 -208 470 345 64 16 chr1 38196741 38196990 -243996674 - MLT1K LTR MaLR -326 262 2 2061 201 22 65 chr1 38197005 38197546 -243996118 + MER113 DNA MER1_type? 4 521 0 525 332 94 28 chr1 38197788 38198258 -243995406 + L2 LINE L2 2371 2871 -443 411 281 90 77 chr1 38198326 38198636 -243995028 + L2 LINE L2 2950 3263 -9 4900 181 13 5 chr1 38199638 38200560 -243993104 - MER63C DNA MER1_type 0 930 2 819 204 92 29 chr1 38200832 38201038 -243992626 - MER20 DNA MER1_type 0 219 1 390 231 96 10 chr1 38201060 38201164 -243992500 - L2 LINE L2 0 3313 3201 351 303 59 25 chr1 38201194 38201313 -243992351 + L2 LINE L2 3141 3263 -9 2028 217 94 6 chr1 38201484 38202025 -243991639 - MLT1E3 LTR MaLR -4 620 7 204 350 103 0 chr1 38202121 38202238 -243991426 - MIR SINE MIR 0 262 134 197 159 45 0 chr1 38202232 38202276 -243991388 + L2 LINE L2 2936 2981 -332 * 2509 294 55 58 chr1 38202306 38203239 -243990425 + L1MC4 LINE L1 7112 8041 -1 229 206 16 16 chr1 38203285 38203348 -243990316 + L2 LINE L2 3103 3165 -148 * 263 222 48 16 chr1 38203327 38203390 -243990274 - MIR SINE MIR -54 208 144 212 319 43 21 chr1 38203389 38203483 -243990181 + L2 LINE L2 2935 3030 -283 * 601 225 47 0 chr1 38203500 38203629 -243990035 + L2 LINE L2 3174 3308 -5 1400 245 160 45 chr1 38203791 38204322 -243989342 + MLT1E LTR MaLR 1 592 -1 2057 126 0 0 chr1 38204521 38204814 -243988850 + AluSg SINE Alu 1 293 -17 1520 217 21 47 chr1 38205753 38206136 -243987528 - MLT1A2 LTR MaLR 0 374 2 1153 215 197 67 chr1 38206198 38206743 -243986921 + LTR50 LTR ERVL 83 793 -2 409 306 54 0 chr1 38206952 38207099 -243986565 + L2 LINE L2 3159 3313 0 222 150 0 0 chr1 38207112 38207152 -243986512 + (TGGA)n Simple_repeat Simple_repeat 3 42 0 2043 96 26 23 chr1 38207243 38207545 -243986119 + AluSc SINE Alu 1 303 -6 264 240 39 106 chr1 38207545 38207649 -243986015 - MLT1J LTR MaLR -41 470 374 342 240 20 10 chr1 38207725 38207874 -243985790 - MLT1J LTR MaLR -313 198 6 216 302 62 52 chr1 38208088 38208184 -243985480 + L3 LINE CR1 900 996 -581 426 293 134 0 chr1 38208227 38208391 -243985273 + MIR SINE MIR 77 262 0 1981 137 13 0 chr1 38208486 38208786 -243984878 + AluSx SINE Alu 1 304 -8 229 311 74 8 chr1 38208786 38208896 -243984768 + L3 LINE CR1 1111 1231 -346 2153 81 3 20 chr1 38208896 38209191 -243984473 + AluSc SINE Alu 1 290 -19 229 311 74 8 chr1 38209191 38209202 -243984462 + L3 LINE CR1 1231 1240 -337 253 250 0 0 chr1 38209323 38209375 -243984289 + L2 LINE L2 3200 3251 -62 2399 61 0 3 chr1 38209763 38210073 -243983591 + AluY SINE Alu 1 309 -2 222 229 42 0 chr1 38210087 38210135 -243983529 - L2 LINE L2 -8 3305 3256 2850 233 135 54 chr1 38210172 38211591 -243982073 - HAL1 LINE L1 -1 2506 972 332 298 71 71 chr1 38211950 38212286 -243981378 - HAL1 LINE L1 -2171 336 1 185 275 27 114 chr1 38212317 38212466 -243981198 - MIR SINE MIR -62 200 65 443 316 29 0 chr1 38212825 38212964 -243980700 + MER117 DNA MER1_type 6 148 -49 468 299 88 44 chr1 38213018 38213269 -243980395 - L3 LINE CR1 -859 718 457 180 0 0 0 chr1 38213606 38213626 -243980038 + (CAAAAA)n Simple_repeat Simple_repeat 5 24 0 23 0 0 0 chr1 38214041 38214064 -243979600 + AT_rich Low_complexity Low_complexity 1 23 0 309 327 0 10 chr1 38214598 38214699 -243978965 + L2 LINE L2 2971 3070 -202 275 250 102 23 chr1 38215029 38215117 -243978547 + L2 LINE L2 3172 3266 -47 284 245 7 142 chr1 38215503 38215580 -243978084 - MER94 DNA DNA 0 134 87 1843 155 0 3 chr1 38215580 38215870 -243977794 - AluSx SINE Alu -23 289 1 284 245 7 142 chr1 38215870 38215947 -243977717 - MER94 DNA DNA -47 87 1 1898 290 111 36 chr1 38216145 38216617 -243977047 + L2 LINE L2 1940 2375 -938 2044 117 0 0 chr1 38216617 38216943 -243976721 - AluSx SINE Alu 0 326 1 1898 290 111 36 chr1 38216943 38217734 -243975930 + L2 LINE L2 2375 3313 0 347 173 27 0 chr1 38218727 38218802 -243974862 + GA-rich Low_complexity Low_complexity 4 80 0 2287 103 0 0 chr1 38218826 38219137 -243974527 + AluSq SINE Alu 2 312 -1 464 233 0 8 chr1 38219179 38219299 -243974365 - MER103 DNA DNA -46 120 2 216 149 21 43 chr1 38220494 38220541 -243973123 + (CCCCAG)n Simple_repeat Simple_repeat 1 46 0 482 223 169 7 chr1 38220617 38220765 -243972899 + MIR SINE MIR 85 256 -6 861 255 30 0 chr1 38220929 38221129 -243972535 + MER3 DNA MER1_type 1 206 -3 470 262 10 0 chr1 38221268 38221371 -243972293 + L2 LINE L2 3210 3313 0 222 283 17 0 chr1 38221373 38221433 -243972231 + GA-rich Low_complexity Low_complexity 3 63 0 418 311 25 0 chr1 38221441 38221563 -243972101 - L3 LINE CR1 -110 1467 1343 2153 102 3 0 chr1 38221714 38222008 -243971656 + AluSg SINE Alu 1 295 -15 463 341 109 0 chr1 38222018 38222229 -243971435 - MIR SINE MIR -8 254 21 318 98 0 0 chr1 38223329 38223380 -243970284 + (TG)n Simple_repeat Simple_repeat 2 52 0 1004 146 27 16 chr1 38223538 38223723 -243969941 + MER53 DNA DNA 3 189 0 320 291 79 97 chr1 38223725 38224065 -243969599 + MLT1I LTR MaLR 57 390 -19 582 219 120 33 chr1 38224072 38224238 -243969426 + MIR SINE MIR 69 248 -14 399 226 78 0 chr1 38224745 38224847 -243968817 + MIR SINE MIR 32 141 -121 415 169 13 0 chr1 38225153 38225230 -243968434 + MIR SINE MIR 168 245 -17 378 0 0 0 chr1 38225361 38225403 -243968261 + (CA)n Simple_repeat Simple_repeat 2 43 0 310 257 114 84 chr1 38227024 38227261 -243966403 - MIR SINE MIR 0 262 19 753 202 0 8 chr1 38227789 38227918 -243965746 - FLAM_A SINE Alu -5 128 1 204 254 48 0 chr1 38228001 38228064 -243965600 + (TAAA)n Simple_repeat Simple_repeat 1 66 0 500 154 0 136 chr1 38229090 38229200 -243964464 + MER2 DNA MER2_type 1 95 -250 232 162 0 0 chr1 38229197 38229234 -243964430 + MER2 DNA MER2_type 58 94 -251 * 1859 123 39 0 chr1 38229239 38229523 -243964141 + AluSx SINE Alu 1 295 -17 953 178 225 4 chr1 38229603 38229757 -243963907 + MER2 DNA MER2_type 64 183 -162 215 30 0 30 chr1 38229757 38229790 -243963874 + (TTG)n Simple_repeat Simple_repeat 2 33 0 953 178 225 4 chr1 38229790 38229866 -243963798 + MER2 DNA MER2_type 183 345 0 547 222 48 8 chr1 38229855 38229981 -243963683 + MER94 DNA DNA 2 132 -2 * 29 28 0 0 chr1 38231061 38231097 -243962567 + AT_rich Low_complexity Low_complexity 1 36 0 182 329 137 0 chr1 38231491 38231564 -243962100 - MIR SINE MIR -61 147 65 395 226 11 17 chr1 38232093 38232270 -243961394 + (TCCA)n Simple_repeat Simple_repeat 3 178 0 218 194 32 32 chr1 38232288 38232350 -243961314 + CT-rich Low_complexity Low_complexity 1 62 0 257 311 0 0 chr1 38232391 38232452 -243961212 - L2 LINE L2 -87 3185 3125 213 276 147 71 chr1 38232530 38232910 -243960754 - L2 LINE L2 -29 3243 2835 272 358 188 0 chr1 38234522 38234687 -243958977 + MER91A DNA MER1_type 1 196 0 286 255 108 20 chr1 38235625 38235727 -243957937 + MIR SINE MIR 16 126 -82 283 303 278 0 chr1 38235930 38236092 -243957572 + MIR SINE MIR 34 240 -22 291 71 0 0 chr1 38236848 38236890 -243956774 + (CA)n Simple_repeat Simple_repeat 2 43 0 453 294 128 32 chr1 38237228 38237446 -243956218 + MIR SINE MIR 20 258 -4 725 195 47 86 chr1 38237869 38238125 -243955539 + L1MC5 LINE L1 7659 7904 -57 233 219 404 0 chr1 38238307 38238453 -243955211 + MIR SINE MIR 48 252 -10 284 318 33 45 chr1 38238882 38239118 -243954546 - MIR SINE MIR -12 250 19 974 255 16 20 chr1 38239192 38239443 -243954221 - L3 LINE CR1 -778 799 550 856 280 179 14 chr1 38239652 38240160 -243953504 + L2 LINE L2 2706 3311 -2 204 286 0 32 chr1 38241165 38241228 -243952436 + MIR SINE MIR 2 62 -200 369 165 17 113 chr1 38241317 38241432 -243952232 - MIR SINE MIR 0 262 159 227 266 0 16 chr1 38241432 38241496 -243952168 + MLT1H LTR MaLR 1 63 -486 270 192 19 0 chr1 38241567 38241619 -243952045 + MLT1H LTR MaLR 223 275 -274 650 214 29 0 chr1 38241707 38241847 -243951817 + MLT1H LTR MaLR 406 549 0 566 255 65 7 chr1 38241847 38242000 -243951664 - MIR SINE MIR -99 163 2 516 283 97 20 chr1 38242039 38242392 -243951272 - L2 LINE L2 -187 3085 2709 374 317 116 27 chr1 38242456 38242680 -243950984 - MIR SINE MIR -6 256 13 499 211 16 16 chr1 38242701 38242824 -243950840 + MIR3 SINE MIR 6 128 -80 237 220 20 10 chr1 38243306 38243406 -243950258 + (CA)n Simple_repeat Simple_repeat 1 101 0 424 244 6 6 chr1 38243478 38243638 -243950026 + (CA)n Simple_repeat Simple_repeat 1 160 0 207 216 0 0 chr1 38244152 38244189 -243949475 + MIR SINE MIR 118 154 -108 325 279 45 27 chr1 38244479 38244590 -243949074 - MER5A DNA MER1_type -20 169 57 601 301 62 18 chr1 38245547 38245773 -243947891 + MIR SINE MIR 21 256 -6 363 303 74 8 chr1 38245927 38246049 -243947615 - L2 LINE L2 -2 3270 3141 469 295 114 12 chr1 38246500 38246708 -243946956 - MIR SINE MIR -1 261 38 253 345 26 0 chr1 38246828 38246941 -243946723 - L2 LINE L2 -225 3047 2932 2308 118 0 9 chr1 38247401 38247716 -243945948 + AluSx SINE Alu 1 312 0 2389 104 0 3 chr1 38249009 38249307 -243944357 - AluSq SINE Alu -15 298 2 339 320 68 20 chr1 38249321 38249468 -243944196 + L2 LINE L2 3115 3268 -4 250 301 11 0 chr1 38249684 38249777 -243943887 + L2 LINE L2 2350 2443 -871 727 276 58 88 chr1 38250230 38250660 -243943004 + L2 LINE L2 2493 2883 -430 2042 155 0 3 chr1 38250660 38250969 -243942695 - AluJo SINE Alu -4 308 1 727 276 58 88 chr1 38250969 38251386 -243942278 + L2 LINE L2 2883 3311 -2 408 368 135 34 chr1 38251444 38251999 -243941665 + L3 LINE CR1 966 1576 -1 330 292 0 21 chr1 38252306 38252402 -243941262 + MIR SINE MIR 47 140 -122 363 308 89 24 chr1 38252659 38252828 -243940836 - MIR SINE MIR -49 213 34 264 30 0 0 chr1 38253116 38253149 -243940515 + (CAA)n Simple_repeat Simple_repeat 1 33 0 276 258 28 63 chr1 38253225 38253378 -243940286 - MIR SINE MIR -61 147 45 289 220 92 37 chr1 38253922 38254031 -243939633 + MIR SINE MIR 130 244 -18 298 333 140 14 chr1 38256151 38256373 -243937291 - MIR SINE MIR 0 262 13 242 194 65 0 chr1 38256656 38256718 -243936946 + MIR SINE MIR 48 113 -149 335 319 25 44 chr1 38256726 38256930 -243936734 - L2 LINE L2 0 3313 3114 227 59 29 0 chr1 38257098 38257132 -243936532 + MADE1 DNA Mariner 45 79 -1 190 318 35 0 chr1 38257132 38257217 -243936447 - L2 LINE L2 -206 3107 3020 290 140 0 0 chr1 38257273 38257323 -243936341 + L2 LINE L2 3264 3313 0 187 172 0 0 chr1 38257339 38257368 -243936296 + L2 LINE L2 3263 3291 -22 180 0 0 0 chr1 38257790 38257810 -243935854 + (A)n Simple_repeat Simple_repeat 1 20 0 278 261 62 51 chr1 38257908 38258084 -243935580 + MER3 DNA MER1_type 32 209 0 * 873 144 29 17 chr1 38257927 38258101 -243935563 - MER3 DNA MER1_type -6 203 28 483 263 42 94 chr1 38258113 38258197 -243935467 + MIR SINE MIR 31 118 -144 1773 162 61 24 chr1 38258197 38258573 -243935091 - MLT1B LTR MaLR 0 390 1 483 263 42 94 chr1 38258573 38258701 -243934963 + MIR SINE MIR 118 232 -30 205 366 0 12 chr1 38259081 38259163 -243934501 - L2 LINE L2 -38 3234 3154 622 254 49 5 chr1 38259233 38259418 -243934246 + MIR SINE MIR 70 262 0 492 312 87 9 chr1 38260398 38260616 -243933048 + MIR SINE MIR 14 248 -14 240 35 0 0 chr1 38261514 38261543 -243932121 + (TCCA)n Simple_repeat Simple_repeat 3 31 0 252 297 0 0 chr1 38261548 38261612 -243932052 - L2 LINE L2 0 3272 3209 380 309 90 62 chr1 38261615 38262376 -243931288 - L2 LINE L2 -225 3047 2258 240 296 88 75 chr1 38262583 38262809 -243930855 + L2 LINE L2 3044 3272 0 260 137 78 20 chr1 38262878 38262929 -243930735 - MLT1J2 LTR MaLR -10 440 387 354 23 0 0 chr1 38263361 38263404 -243930260 + (TC)n Simple_repeat Simple_repeat 1 43 0 2177 142 18 28 chr1 38264080 38264474 -243929190 + MLT1B LTR MaLR 1 390 0 191 294 76 0 chr1 38264482 38264574 -243929090 + L2 LINE L2 2752 2850 -464 207 0 0 0 chr1 38264696 38264719 -243928945 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 681 155 0 17 chr1 38264722 38264838 -243928826 - FRAM SINE Alu -31 145 32 413 283 202 16 chr1 38264846 38265104 -243928560 + L2 LINE L2 3008 3313 0 399 145 0 0 chr1 38267335 38267418 -243926246 + (TG)n Simple_repeat Simple_repeat 1 83 0 221 226 0 19 chr1 38268003 38268056 -243925608 + (CCG)n Simple_repeat Simple_repeat 1 52 0 394 331 0 31 chr1 38268152 38268315 -243925349 + C-rich Low_complexity Low_complexity 3 160 0 183 139 0 0 chr1 38268911 38268947 -243924717 + (CGG)n Simple_repeat Simple_repeat 1 36 0 235 0 0 54 chr1 38269323 38269360 -243924304 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 2456 89 0 9 chr1 38270108 38270424 -243923240 - AluSq SINE Alu 0 313 1 538 344 115 44 chr1 38270737 38270806 -243922858 + L2 LINE L2 1566 1629 -1685 2317 82 10 13 chr1 38270806 38271110 -243922554 - AluSp SINE Alu -10 303 1 538 344 115 44 chr1 38271110 38271967 -243921697 + L2 LINE L2 1629 2558 -756 257 319 43 22 chr1 38272265 38272403 -243921261 + L2 LINE L2 3171 3311 -2 696 286 92 4 chr1 38273238 38273465 -243920199 - MIR SINE MIR 0 262 16 317 331 14 42 chr1 38274117 38274259 -243919405 - MIR SINE MIR -105 157 20 222 274 0 0 chr1 38274258 38274320 -243919344 + MIR SINE MIR 201 262 0 * 208 299 10 41 chr1 38275227 38275324 -243918340 + (ATAGG)n Simple_repeat Simple_repeat 4 97 0 * 391 263 11 59 chr1 38275286 38275531 -243918133 + (GGATG)n Simple_repeat Simple_repeat 1 233 0 399 333 0 0 chr1 38277004 38277121 -243916543 + MIR SINE MIR 30 146 -62 201 214 71 43 chr1 38277269 38277339 -243916325 - L3 LINE CR1 -114 1463 1392 2418 97 0 0 chr1 38277975 38278273 -243915391 + AluSg SINE Alu 1 298 -12 571 327 37 47 chr1 38278317 38279124 -243914540 - L1ME3A LINE L1 -230 5940 5127 2389 147 14 53 chr1 38279481 38279684 -243913980 + L1MB3 LINE L1 5688 5897 -286 2149 135 0 0 chr1 38279684 38279987 -243913677 + AluSx SINE Alu 1 303 -9 2389 147 14 53 chr1 38279987 38280292 -243913372 + L1MB3 LINE L1 5897 6176 -7 196 330 54 9 chr1 38280300 38280412 -243913252 - L2 LINE L2 -189 3083 2967 1647 167 0 38 chr1 38280850 38281143 -243912521 + AluJo SINE Alu 1 282 -30 276 186 0 0 chr1 38281166 38281225 -243912439 + GA-rich Low_complexity Low_complexity 4 62 0 279 322 0 0 chr1 38281357 38281447 -243912217 + CT-rich Low_complexity Low_complexity 4 93 0 1670 179 0 24 chr1 38282060 38282356 -243911308 - AluJo SINE Alu -9 303 15 522 280 36 0 chr1 38282433 38282588 -243911076 - MIR SINE MIR -37 171 9 2149 143 0 9 chr1 38282616 38282931 -243910733 + AluJo SINE Alu 1 312 0 298 293 9 38 chr1 38282931 38283037 -243910627 + MER5A DNA MER1_type 63 165 -24 286 283 242 8 chr1 38284064 38284184 -243909480 + MER5A DNA MER1_type 41 188 -1 185 176 0 0 chr1 38284253 38284287 -243909377 + MIR SINE MIR 113 146 -62 399 221 21 11 chr1 38284389 38284484 -243909180 + L2 LINE L2 3202 3297 -16 225 0 0 0 chr1 38284485 38284510 -243909154 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 269 321 163 35 chr1 38285196 38285713 -243907951 + L2 LINE L2 1567 2016 -1298 2552 74 0 3 chr1 38285713 38286025 -243907639 - AluY SINE Alu 0 311 1 269 321 163 35 chr1 38286025 38286397 -243907267 + L2 LINE L2 2016 2570 -744 631 197 141 7 chr1 38286801 38286943 -243906721 + FRAM SINE Alu 1 160 -16 231 250 16 16 chr1 38289593 38289657 -243904007 - L2 LINE L2 -219 3053 2990 447 325 27 16 chr1 38289795 38289983 -243903681 - MIR SINE MIR -16 246 57 550 325 47 26 chr1 38290124 38290358 -243903306 - MIR SINE MIR -1 261 23 195 284 15 30 chr1 38290906 38290973 -243902691 - L2 LINE L2 -68 3204 3139 1042 271 145 22 chr1 38291003 38291773 -243901891 + L2 LINE L2 2443 3313 0 261 259 0 0 chr1 38292105 38292163 -243901501 + MIR SINE MIR 13 70 -192 388 272 99 43 chr1 38292253 38292438 -243901226 + MIR SINE MIR 21 213 -49 402 299 168 45 chr1 38292624 38292676 -243900988 + L2 LINE L2 2891 2935 -378 222 62 0 0 chr1 38292676 38292708 -243900956 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 402 299 168 45 chr1 38292708 38293030 -243900634 + L2 LINE L2 2935 3311 -2 2651 99 30 35 chr1 38293516 38293919 -243899745 - MSTC LTR MaLR -27 401 1 919 259 24 37 chr1 38294183 38294473 -243899191 + L1ME LINE L1 5482 5770 -351 406 281 37 15 chr1 38294493 38294628 -243899036 - MIR SINE MIR -73 189 52 265 347 33 8 chr1 38345510 38345631 -243848033 - L2 LINE L2 -4 3268 3145 1431 285 65 14 chr1 38345982 38346473 -243847191 - LTR33 LTR ERVL 0 521 6 1934 166 0 0 chr1 38346503 38346793 -243846871 - AluJb SINE Alu -22 290 1 268 237 10 41 chr1 38346874 38346971 -243846693 - MIR SINE MIR -112 150 57 777 144 30 30 chr1 38346973 38347105 -243846559 - FLAM_C SINE Alu 0 133 2 182 171 0 29 chr1 38348440 38348475 -243845189 - L2 LINE L2 -19 3294 3261 181 164 18 36 chr1 38349017 38349072 -243844592 + (CATATA)n Simple_repeat Simple_repeat 2 55 0 2487 100 29 40 chr1 38349076 38349455 -243844209 + THE1C LTR MaLR 1 375 0 3384 209 1 33 chr1 38349468 38350129 -243843535 + MER82 DNA MER2_type 14 653 0 211 286 0 0 chr1 38350970 38351040 -243842624 + (TAA)n Simple_repeat Simple_repeat 2 71 0 4422 132 13 0 chr1 38351198 38351875 -243841789 + L1PA15 LINE L1 5480 6165 0 667 270 95 11 chr1 38351892 38352166 -243841498 - L1MC4 LINE L1 -27 8015 7719 2352 133 18 10 chr1 38352180 38352572 -243841092 - L1PA13 LINE L1 0 6163 5769 * 7415 55 0 7 chr1 38352564 38353880 -243839784 - L1PA8 LINE L1 -3 6169 4855 42265 36 26 2 chr1 38353980 38359083 -243834581 - L1P LINE L1 -919 5227 1 354 220 234 0 chr1 38359109 38359250 -243834414 - L2 LINE L2 -284 3029 2856 204 167 0 0 chr1 38360276 38360324 -243833340 + (CAGAGA)n Simple_repeat Simple_repeat 4 51 0 248 276 9 19 chr1 38360336 38360441 -243833223 + GA-rich Low_complexity Low_complexity 2 105 0 1692 167 0 43 chr1 38360467 38360772 -243832892 + AluJo SINE Alu 1 292 -20 296 182 136 11 chr1 38360995 38361083 -243832581 + MER97b DNA MER1_type? 1 99 -954 1577 27 6 6 chr1 38361163 38361346 -243832318 - AluY SINE Alu -128 183 1 737 150 6 50 chr1 38361348 38361508 -243832156 - L1MA8 LINE L1 -169 6122 5970 3379 193 33 68 chr1 38361512 38362491 -243831173 + MER97c DNA MER1_type? 119 1062 -28 1377 106 0 19 chr1 38362491 38362698 -243830966 + L1PB1 LINE L1 5948 6150 -1 27 0 0 0 chr1 38362698 38362725 -243830939 + AT_rich Low_complexity Low_complexity 1 27 0 803 204 63 11 chr1 38362787 38362978 -243830686 + MLT1A1 LTR MaLR 165 365 0 702 216 0 34 chr1 38363506 38363654 -243830010 + MER5A DNA MER1_type 1 143 -46 239 250 58 29 chr1 38364175 38364279 -243829385 + L3 LINE CR1 644 750 -827 225 370 35 23 chr1 38364330 38364503 -243829161 + L3 LINE CR1 63 237 -1340 540 42 0 0 chr1 38364604 38364675 -243828989 + (TAGA)n Simple_repeat Simple_repeat 2 72 0 193 250 61 106 chr1 38365217 38365349 -243828315 + L3 LINE CR1 982 1107 -470 248 335 62 46 chr1 38365379 38365465 -243828199 + L3 LINE CR1 1179 1262 -315 1709 186 33 53 chr1 38365465 38365863 -243827801 - MLT1B LTR MaLR 0 390 1 248 335 62 46 chr1 38365863 38365970 -243827694 + L3 LINE CR1 1262 1375 -202 256 241 46 37 chr1 38365974 38365994 -243827670 - L1MA4A LINE L1 -6 6297 5991 2133 118 3 0 chr1 38365994 38366281 -243827383 + AluSq SINE Alu 2 289 -24 4668 146 44 37 chr1 38366286 38367428 -243826236 - L1PB4 LINE L1 -12 6144 4999 291 400 35 0 chr1 38367428 38367628 -243826036 + L3 LINE CR1 1365 1571 -6 745 329 71 13 chr1 38368419 38369002 -243824662 - L2 LINE L2 -1 3312 2698 481 103 0 0 chr1 38369012 38369080 -243824584 - L1MA7 LINE L1 -434 5857 5790 * 1877 151 33 101 chr1 38369075 38369381 -243824283 + L1MA7 LINE L1 5837 6162 -129 2758 10 0 10 chr1 38369381 38369684 -243823980 + AluYa5 SINE Alu 1 300 -11 1877 151 33 101 chr1 38369684 38369827 -243823837 + L1MA7 LINE L1 6162 6253 -38 1318 199 115 13 chr1 38369827 38370139 -243823525 + MER2 DNA MER2_type 1 344 0 1877 151 33 101 chr1 38370139 38370172 -243823492 + L1MA7 LINE L1 6253 6287 -4 1877 284 123 14 chr1 38370186 38371032 -243822632 - L2 LINE L2 -671 2643 1706 309 270 0 30 chr1 38371252 38371352 -243822312 - L2 LINE L2 -3 3310 3214 258 154 0 0 chr1 38371679 38371718 -243821946 + MSTB LTR MaLR 1 39 -387 1240 191 0 5 chr1 38371818 38372028 -243821636 + MSTB LTR MaLR 218 426 0 343 290 99 30 chr1 38372146 38372320 -243821344 + MLT1J LTR MaLR 31 178 -268 4499 259 77 36 chr1 38372328 38374964 -243818700 + L1ME1 LINE L1 34 2561 -3654 2198 62 0 0 chr1 38374964 38375236 -243818428 - L1PA4 LINE L1 0 6155 5884 4499 259 77 36 chr1 38375236 38375596 -243818068 + L1ME1 LINE L1 2561 2905 -3310 2511 83 0 3 chr1 38375596 38375908 -243817756 + AluY SINE Alu 1 311 0 4499 259 77 36 chr1 38375908 38376418 -243817246 + L1ME1 LINE L1 2905 3653 -2562 1464 173 4 11 chr1 38376418 38376690 -243816974 + L1P LINE L1 4533 4802 -1344 2097 237 52 10 chr1 38376705 38376775 -243816889 + L1ME1 LINE L1 4290 4356 -1859 2055 183 45 21 chr1 38376775 38377195 -243816469 - MSTB1 LTR MaLR 0 432 3 2097 237 52 10 chr1 38377195 38377783 -243815881 + L1ME1 LINE L1 4356 4981 -1234 527 0 0 16 chr1 38377783 38377847 -243815817 + (TAA)n Simple_repeat Simple_repeat 1 63 0 2097 237 52 10 chr1 38377847 38377878 -243815786 + L1ME1 LINE L1 4981 5009 -1206 286 194 30 0 chr1 38377876 38377943 -243815721 - L1M4 LINE L1 -1144 5002 4934 * 2483 209 32 41 chr1 38377941 38378470 -243815194 + L1ME1 LINE L1 5391 5914 -321 2893 91 5 0 chr1 38378470 38378875 -243814789 - L1PA13 LINE L1 0 6163 5757 2483 209 32 41 chr1 38378875 38379000 -243814664 + L1ME1 LINE L1 5914 6039 -196 2918 82 2 17 chr1 38379000 38379402 -243814262 + L1PA8A LINE L1 5709 6104 -27 22 35 0 0 chr1 38379407 38379436 -243814228 + AT_rich Low_complexity Low_complexity 1 29 0 592 212 153 6 chr1 38379457 38379628 -243814036 + L1ME1 LINE L1 6047 6246 -1 228 286 0 0 chr1 38379685 38379741 -243813923 + MLT1J LTR MaLR 283 338 -173 761 304 100 40 chr1 38379865 38380316 -243813348 - MLT1K LTR MaLR -107 481 4 407 271 85 0 chr1 38380716 38380834 -243812830 + MIR SINE MIR 62 189 -73 600 213 0 0 chr1 38382563 38382690 -243810974 + MIR SINE MIR 72 198 -64 192 145 81 113 chr1 38382726 38382760 -243810904 + MIR SINE MIR 203 236 -26 1939 175 135 16 chr1 38382760 38383211 -243810453 - MLT1D LTR MaLR 0 505 1 192 145 81 113 chr1 38383211 38383238 -243810426 + MIR SINE MIR 236 262 0 862 223 22 0 chr1 38383344 38383528 -243810136 - MER5A DNA MER1_type 0 189 2 308 228 13 0 chr1 38383550 38383629 -243810035 + L3 LINE CR1 1423 1502 -75 268 300 25 42 chr1 38383871 38383991 -243809673 + MIR SINE MIR 71 188 -74 416 303 35 0 chr1 38384431 38384573 -243809091 - MIR SINE MIR -7 255 109 225 259 167 0 chr1 38385919 38386027 -243807637 + L2 LINE L2 3179 3304 -9 685 296 100 44 chr1 38386325 38387178 -243806486 + L2 LINE L2 2357 3261 -52 209 32 0 32 chr1 38387289 38387320 -243806344 + (TAA)n Simple_repeat Simple_repeat 3 32 0 421 344 52 13 chr1 38387844 38388074 -243805590 - L3 LINE CR1 -352 1225 987 180 348 57 19 chr1 38388070 38388228 -243805436 - L2 LINE L2 -1109 2205 2042 * 225 269 199 28 chr1 38388551 38388692 -243804972 + MLT1K LTR MaLR 30 194 -394 1731 157 18 14 chr1 38389506 38389831 -243803833 - AluSx SINE Alu 0 326 1 999 197 22 0 chr1 38390355 38390533 -243803131 - MER58A DNA MER1_type 0 224 43 511 257 171 2 chr1 38390675 38390881 -243802783 + MIR SINE MIR 4 226 -36 293 326 94 33 chr1 38391126 38391519 -243802145 - L2 LINE L2 -457 2857 2441 208 155 69 69 chr1 38392631 38392689 -243800975 + MIR SINE MIR 118 175 -87 1452 189 139 16 chr1 38392717 38393034 -243800630 - L1MD3 LINE L1 -986 7009 6654 1423 79 138 5 chr1 38393160 38393363 -243800301 + MER30 DNA MER1_type 1 230 0 1246 254 83 38 chr1 38393663 38394060 -243799604 - LTR16C LTR ERVL -6 485 71 500 340 20 0 chr1 38394752 38394905 -243798759 + MER91A DNA MER1_type 1 156 -40 234 0 0 0 chr1 38394906 38394932 -243798732 + (T)n Simple_repeat Simple_repeat 1 26 0 2197 62 0 45 chr1 38395039 38395330 -243798334 - AluY SINE Alu -33 278 1 2479 146 21 5 chr1 38395496 38395880 -243797784 - MLT1B LTR MaLR 0 390 1 317 238 0 0 chr1 38396399 38396462 -243797202 + MER91 DNA MER1_type 78 140 0 1780 187 200 47 chr1 38396605 38397075 -243796589 + MLT1F LTR MaLR 1 542 0 2257 107 0 3 chr1 38397252 38397550 -243796114 - AluSg SINE Alu -13 297 1 33 25 0 0 chr1 38398289 38398329 -243795335 + AT_rich Low_complexity Low_complexity 1 40 0 244 145 79 0 chr1 38398645 38398721 -243794943 + (TA)n Simple_repeat Simple_repeat 2 83 0 237 208 56 14 chr1 38399168 38399240 -243794424 - L1MC4 LINE L1 -3 8039 7965 186 234 85 53 chr1 38399380 38399474 -243794190 - MIR SINE MIR -46 216 120 484 251 231 0 chr1 38399502 38399697 -243793967 + MIR SINE MIR 13 252 -10 1795 258 53 25 chr1 38400672 38401195 -243792469 + L1MB8 LINE L1 11 548 -6311 7965 227 38 16 chr1 38401202 38403325 -243790339 + L1MB8 LINE L1 3196 5365 -1592 3352 177 18 66 chr1 38403335 38404121 -243789543 + L1MB8 LINE L1 6241 6988 -1 5699 183 54 8 chr1 38404122 38405867 -243787797 + L1MC2 LINE L1 4514 6341 -3 541 298 34 21 chr1 38406360 38406404 -243787260 + MIR SINE MIR 18 60 -202 1664 262 125 21 chr1 38406404 38406939 -243786725 + MLT1E LTR MaLR 1 591 -2 541 298 34 21 chr1 38406939 38407079 -243786585 + MIR SINE MIR 60 208 -54 1705 169 140 29 chr1 38407079 38407464 -243786200 + MSTC LTR MaLR 1 428 0 541 298 34 21 chr1 38407464 38407516 -243786148 + MIR SINE MIR 208 258 -4 425 308 35 14 chr1 38408264 38408407 -243785257 + MER5A DNA MER1_type 44 189 0 555 179 55 21 chr1 38408459 38408604 -243785060 - MER117 DNA MER1_type -47 150 1 2686 246 184 26 chr1 38409499 38410743 -243782921 + HAL1 LINE L1 672 2111 -396 1006 241 96 30 chr1 38410936 38411343 -243782321 + HAL1 LINE L1 2047 2480 -27 2269 186 24 17 chr1 38411358 38414779 -243778885 + L1P4 LINE L1 4 3586 -3230 2200 104 10 0 chr1 38414779 38415068 -243778596 + AluSp SINE Alu 1 292 -21 2269 186 24 17 chr1 38415068 38417939 -243775725 + L1P4 LINE L1 3586 6436 -380 2518 90 0 0 chr1 38417941 38418284 -243775380 + L1P LINE L1 4471 4813 -1333 1024 321 27 25 chr1 38418392 38418808 -243774856 - L2 LINE L2 -407 2907 2488 4425 132 13 2 chr1 38418808 38419435 -243774229 + MER41B LTR ERV1 2 635 0 1024 321 27 25 chr1 38419435 38419573 -243774091 - L2 LINE L2 -826 2488 2352 979 298 109 20 chr1 38419678 38420127 -243773537 - L2 LINE L2 0 3313 2825 2873 151 4 26 chr1 38420131 38420237 -243773427 + L1MA8 LINE L1 5371 5478 -813 2276 108 16 0 chr1 38420237 38420544 -243773120 - AluSq SINE Alu 0 313 2 2873 151 4 26 chr1 38420544 38420941 -243772723 + L1MA8 LINE L1 5478 5863 -428 403 259 12 40 chr1 38421649 38421819 -243771845 - L3 LINE CR1 -1 1576 1346 3904 197 48 52 chr1 38421863 38422929 -243770735 + MER97c DNA MER1_type? 27 1087 -3 249 319 101 22 chr1 38422931 38423069 -243770595 - L3 LINE CR1 -283 1294 1146 537 308 109 10 chr1 38423074 38423308 -243770356 - MIR SINE MIR -2 260 2 230 338 58 29 chr1 38423362 38423501 -243770163 - L3 LINE CR1 -482 1095 953 765 211 15 15 chr1 38425009 38425142 -243768522 + FLAM_C SINE Alu 1 133 0 386 165 13 0 chr1 38425361 38425440 -243768224 + CT-rich Low_complexity Low_complexity 2 81 0 241 311 14 0 chr1 38425974 38426048 -243767616 + L2 LINE L2 2979 3053 -219 728 301 127 24 chr1 38426261 38426679 -243766985 - L1ME4a LINE L1 -234 5887 5427 1878 143 49 0 chr1 38427852 38428139 -243765525 + AluSx SINE Alu 1 301 -11 409 333 9 0 chr1 38428954 38429059 -243764605 + MIR SINE MIR 6 111 -151 567 309 111 5 chr1 38429424 38429631 -243764033 - MIR SINE MIR -2 260 32 413 220 39 167 chr1 38429788 38430124 -243763540 + MLT1I LTR MaLR 70 362 -47 221 167 19 0 chr1 38431988 38432042 -243761622 + GA-rich Low_complexity Low_complexity 1 55 0 321 329 7 23 chr1 38432120 38432321 -243761343 + GA-rich Low_complexity Low_complexity 1 197 0 337 245 75 47 chr1 38432587 38432693 -243760971 + MIR SINE MIR 40 148 -60 1934 182 42 13 chr1 38432702 38433086 -243760578 - L1 LINE L1 -1308 4838 4444 2762 157 8 19 chr1 38433086 38433556 -243760108 + L1PA16 LINE L1 5699 6165 -1 21 0 0 0 chr1 38433556 38433577 -243760087 + AT_rich Low_complexity Low_complexity 1 21 0 254 281 125 0 chr1 38433577 38433673 -243759991 + MIR SINE MIR 138 245 -17 23 0 0 0 chr1 38433673 38433696 -243759968 + AT_rich Low_complexity Low_complexity 1 23 0 298 235 118 0 chr1 38433696 38433781 -243759883 + MIR SINE MIR 82 176 -86 350 299 84 12 chr1 38433977 38434144 -243759520 - MIR SINE MIR -40 222 44 180 0 0 0 chr1 38434610 38434630 -243759034 + (TG)n Simple_repeat Simple_repeat 1 20 0 225 362 6 17 chr1 38434635 38434809 -243758855 + GA-rich Low_complexity Low_complexity 1 172 0 309 51 0 0 chr1 38435039 38435078 -243758586 + (TC)n Simple_repeat Simple_repeat 1 39 0 844 11 0 0 chr1 38435568 38435661 -243758003 + L1PA4 LINE L1 6061 6153 -2 591 287 104 42 chr1 38436035 38436390 -243757274 + LTR16C LTR ERVL 115 491 0 235 239 56 56 chr1 38436398 38436469 -243757195 - MIR SINE MIR -66 196 126 268 234 158 70 chr1 38436480 38436638 -243757026 - L2 LINE L2 -27 3286 3115 285 295 170 9 chr1 38436787 38436899 -243756765 - MIR SINE MIR -130 132 3 764 206 14 7 chr1 38437593 38437739 -243755925 + FRAM SINE Alu 1 146 -30 1011 155 0 6 chr1 38438485 38438646 -243755018 - AluJ SINE Alu -26 286 127 264 156 0 0 chr1 38438673 38438718 -243754946 - AluJ SINE Alu -173 129 85 413 301 54 42 chr1 38438729 38439137 -243754527 + L1M4 LINE L1 1288 1700 -4842 423 0 0 0 chr1 38439168 38439215 -243754449 + (CA)n Simple_repeat Simple_repeat 2 48 0 435 239 0 94 chr1 38439220 38439379 -243754285 + L1M4 LINE L1 1942 2085 -4740 261 349 43 59 chr1 38439546 38439699 -243753965 + L2 LINE L2 2716 2870 -402 321 89 0 0 chr1 38439699 38439744 -243753920 + (CA)n Simple_repeat Simple_repeat 2 46 0 261 349 43 59 chr1 38439744 38439919 -243753745 + L2 LINE L2 2870 3036 -236 1166 309 94 29 chr1 38439919 38440440 -243753224 + LTR67 LTR ERVL 3 557 0 261 349 43 59 chr1 38440440 38440465 -243753199 + L2 LINE L2 3036 3060 -212 287 292 54 65 chr1 38440579 38440747 -243752917 + L2 LINE L2 3145 3310 -3 16374 126 22 10 chr1 38440834 38443110 -243750554 + L1PA11 LINE L1 2605 4935 -1239 2342 103 0 3 chr1 38443110 38443421 -243750243 - AluY SINE Alu -1 310 1 16374 126 22 10 chr1 38443421 38444677 -243748987 + L1PA11 LINE L1 4935 6174 0 328 336 67 0 chr1 38444689 38444808 -243748856 + L3 LINE CR1 359 485 -1092 1733 214 45 24 chr1 38444975 38445400 -243748264 + MER63B DNA MER1_type 2 435 -1 784 274 68 28 chr1 38445550 38445798 -243747866 - MIR SINE MIR -3 259 2 1677 76 0 0 chr1 38446111 38446322 -243747342 + AluSx SINE Alu 63 273 -39 1914 170 20 12 chr1 38446634 38446975 -243746689 + MER2 DNA MER2_type 1 344 0 207 327 18 62 chr1 38447128 38447241 -243746423 + L2 LINE L2 3116 3223 -49 590 299 37 25 chr1 38448278 38448522 -243745142 - MIR SINE MIR -10 252 6 2069 108 0 3 chr1 38448758 38449055 -243744609 + AluSg SINE Alu 1 296 -14 425 273 43 56 chr1 38449390 38449551 -243744113 - MER5A DNA MER1_type -1 188 30 592 245 184 22 chr1 38449794 38450072 -243743592 + MLT1K LTR MaLR 208 530 -58 401 372 62 48 chr1 38451677 38452023 -243741641 - L1ME3A LINE L1 -230 5940 5589 656 186 45 62 chr1 38452374 38452551 -243741113 - MER5B DNA MER1_type 0 178 5 333 312 145 0 chr1 38453172 38453310 -243740354 - MIR SINE MIR -7 255 98 756 255 182 38 chr1 38453579 38453947 -243739717 - L2 LINE L2 -1 3312 2892 209 344 0 55 chr1 38453958 38454086 -243739578 + L2 LINE L2 2944 3064 -208 783 231 64 15 chr1 38455224 38455427 -243738237 - L2 LINE L2 -1 3312 3100 635 279 50 41 chr1 38455725 38456066 -243737598 + L1MEd LINE L1 561 904 -5215 685 311 98 3 chr1 38456118 38456465 -243737199 - L2 LINE L2 -250 3063 2691 1642 120 8 0 chr1 38456469 38456719 -243736945 + AluSx SINE Alu 61 312 0 664 195 0 8 chr1 38456729 38456857 -243736807 + L1PA13 LINE L1 6032 6158 -5 913 278 121 3 chr1 38457802 38458158 -243735506 - L2 LINE L2 -1202 2112 1715 1165 126 6 0 chr1 38458589 38458780 -243734884 + AluSg/x SINE Alu 115 306 0 532 264 90 0 chr1 38458871 38459038 -243734626 - MIR SINE MIR 0 262 81 287 286 19 76 chr1 38459055 38459160 -243734504 - MIR SINE MIR -157 105 7 296 310 126 35 chr1 38459506 38459737 -243733927 + MIR SINE MIR 8 254 -8 304 322 130 29 chr1 38460065 38460273 -243733391 + L2 LINE L2 2678 2906 -408 348 230 0 92 chr1 38460295 38460382 -243733282 + L2 LINE L2 3203 3281 -32 466 223 45 9 chr1 38461421 38461533 -243732131 - MIR SINE MIR -112 150 35 1528 169 49 3 chr1 38461643 38461927 -243731737 + AluJb SINE Alu 1 297 -15 22 0 0 0 chr1 38461934 38461956 -243731708 + AT_rich Low_complexity Low_complexity 1 22 0 587 238 77 0 chr1 38462027 38462170 -243731494 - MIR3 SINE MIR -10 198 45 252 296 49 12 chr1 38463243 38463324 -243730340 - L2 LINE L2 -18 3295 3212 183 219 0 0 chr1 38463330 38463362 -243730302 + MIR SINE MIR 210 241 -21 230 246 16 33 chr1 38464205 38464266 -243729398 - L2 LINE L2 -23 3249 3190 2051 127 0 13 chr1 38464270 38464585 -243729079 + AluSx SINE Alu 1 311 -1 2111 92 10 3 chr1 38464691 38464984 -243728680 + AluSg SINE Alu 1 295 -15 619 287 13 0 chr1 38465535 38465692 -243727972 + L3 LINE CR1 1347 1505 -72 414 79 0 0 chr1 38466798 38466861 -243726803 + (CAG)n Simple_repeat Simple_repeat 1 63 0 339 192 356 0 chr1 38466862 38466897 -243726767 + MER5A DNA MER1_type 43 64 -125 2170 103 13 0 chr1 38466897 38467199 -243726465 + AluSc SINE Alu 1 306 -3 339 192 356 0 chr1 38467199 38467267 -243726397 + MER5A DNA MER1_type 64 183 -6 258 237 17 0 chr1 38467398 38467457 -243726207 + MLT1K LTR MaLR 529 588 0 1576 149 43 0 chr1 38467666 38467947 -243725717 - L1MA7 LINE L1 -5 6286 5994 1632 164 116 3 chr1 38468326 38468637 -243725027 - MER7A DNA MER2_type -1 345 2 1042 182 0 0 chr1 38469628 38469804 -243723860 + MER58A DNA MER1_type 49 224 0 2305 78 7 3 chr1 38469877 38470173 -243723491 + THE1A LTR MaLR 59 355 0 302 267 104 79 chr1 38470397 38470777 -243722887 - MLT1G LTR MaLR -4 577 16 2054 54 8 8 chr1 38470801 38471062 -243722602 + AluY SINE Alu 37 297 -14 273 98 0 0 chr1 38471704 38471745 -243721919 + (CA)n Simple_repeat Simple_repeat 2 42 0 191 299 198 14 chr1 38472508 38472725 -243720939 + L2 LINE L2 2360 2616 -698 230 372 53 0 chr1 38472740 38472834 -243720830 + L2 LINE L2 3212 3310 -3 252 317 81 16 chr1 38472883 38473006 -243720658 + MIR SINE MIR 75 205 -57 924 83 0 0 chr1 38473454 38473575 -243720089 + AluSg/x SINE Alu 171 291 -19 1369 290 65 8 chr1 38473869 38474362 -243719302 - LTR33 LTR ERVL 0 521 1 803 322 51 34 chr1 38474687 38475454 -243718210 - ERVL LTR ERVL -505 5259 4415 254 293 53 0 chr1 38475777 38475852 -243717812 - ERVL LTR ERVL -4321 1443 1365 369 43 0 0 chr1 38476630 38476677 -243716987 + (GA)n Simple_repeat Simple_repeat 1 47 0 449 185 109 0 chr1 38476749 38476841 -243716823 + MIR SINE MIR 45 146 -62 509 228 7 0 chr1 38477197 38477333 -243716331 + CT-rich Low_complexity Low_complexity 4 140 0 246 281 67 74 chr1 38477355 38477490 -243716174 - L2 LINE L2 -32 3240 3107 340 185 54 54 chr1 38477766 38477858 -243715806 + MLT1I LTR MaLR 40 131 -278 685 168 44 84 chr1 38477917 38478120 -243715544 + MER106B DNA MER1_type 397 591 -468 2117 102 0 0 chr1 38478145 38478477 -243715187 - AluSg SINE Alu 0 332 1 622 154 73 0 chr1 38478487 38478610 -243715054 - L1MB3 LINE L1 -2 6181 6050 398 274 45 45 chr1 38478633 38478812 -243714852 + MLT1J2 LTR MaLR 272 450 0 270 271 104 31 chr1 38481437 38481533 -243712131 + L2 LINE L2 3168 3270 -2 183 375 22 92 chr1 38481672 38481856 -243711808 + L2 LINE L2 3005 3175 -97 21 36 0 0 chr1 38482104 38482132 -243711532 + AT_rich Low_complexity Low_complexity 1 28 0 230 180 16 0 chr1 38482628 38482689 -243710975 + (TGAA)n Simple_repeat Simple_repeat 1 62 0 262 280 0 13 chr1 38482707 38482782 -243710882 + (TGAA)n Simple_repeat Simple_repeat 2 75 0 326 241 18 0 chr1 38482806 38482918 -243710746 + (TGAA)n Simple_repeat Simple_repeat 4 117 0 327 297 28 50 chr1 38483189 38483371 -243710293 - MER5B DNA MER1_type 0 178 1 288 0 0 0 chr1 38483502 38483534 -243710130 + (CA)n Simple_repeat Simple_repeat 2 33 0 923 231 20 0 chr1 38485041 38485240 -243708424 + MIR SINE MIR 5 207 -55 407 267 87 7 chr1 38485240 38485390 -243708274 - LTR33 LTR ERVL -359 162 1 247 261 46 0 chr1 38485476 38485541 -243708123 + MIR SINE MIR 193 260 -2 622 277 36 31 chr1 38485647 38485871 -243707793 + L2 LINE L2 2835 3059 -254 402 235 25 25 chr1 38485871 38485990 -243707674 - LTR33 LTR ERVL 0 521 403 718 266 5 22 chr1 38486059 38486243 -243707421 - LTR33 LTR ERVL -302 219 39 25 51 0 0 chr1 38486337 38486376 -243707288 + AT_rich Low_complexity Low_complexity 1 39 0 2549 58 0 0 chr1 38486388 38486697 -243706967 + AluY SINE Alu 1 309 -2 357 330 0 52 chr1 38486715 38486830 -243706834 + L2 LINE L2 3164 3272 0 666 302 21 92 chr1 38487207 38487872 -243705792 + L2 LINE L2 2656 3270 -2 188 67 33 0 chr1 38487873 38487903 -243705761 + (TGGA)n Simple_repeat Simple_repeat 1 31 0 184 256 12 49 chr1 38488180 38488262 -243705402 - MIR SINE MIR 0 262 184 * 254 319 14 0 chr1 38488258 38488327 -243705337 - MIR SINE MIR -185 77 8 233 326 77 22 chr1 38489285 38489466 -243704198 + L2 LINE L2 2652 2842 -472 1342 239 117 18 chr1 38489641 38490084 -243703580 - MLT1D LTR MaLR 0 505 19 338 220 347 0 chr1 38490424 38490597 -243703067 + MIR SINE MIR 20 252 -10 1092 167 22 57 chr1 38491546 38491773 -243701891 + MER20 DNA MER1_type 1 219 0 1694 222 106 58 chr1 38492638 38493155 -243700509 - MLT1F LTR MaLR 0 542 1 257 333 11 11 chr1 38493217 38493304 -243700360 + L2 LINE L2 3185 3271 -1 273 140 0 0 chr1 38493307 38493364 -243700300 + (TGAA)n Simple_repeat Simple_repeat 4 60 0 392 233 150 52 chr1 38495241 38495434 -243698230 - L2 LINE L2 -1 3271 3060 589 157 104 22 chr1 38495780 38495914 -243697750 + L1MB3 LINE L1 6032 6176 -7 1459 141 122 11 chr1 38495935 38496197 -243697467 - AluSx SINE Alu -21 291 1 281 294 49 49 chr1 38496219 38496321 -243697343 - L2 LINE L2 -32 3240 3139 336 294 151 8 chr1 38496331 38496450 -243697214 + L2 LINE L2 3010 3145 -127 1695 174 23 0 chr1 38496570 38496869 -243696795 + AluSx SINE Alu 1 306 -6 186 191 0 0 chr1 38496932 38496974 -243696690 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 188 342 186 18 chr1 38497065 38497275 -243696389 - L2 LINE L2 -355 2959 2786 2205 111 0 0 chr1 38497275 38497573 -243696091 - AluSg SINE Alu -12 298 1 188 342 186 18 chr1 38497573 38497760 -243695904 - L2 LINE L2 -528 2786 2495 507 229 117 45 chr1 38497772 38497951 -243695713 - L2 LINE L2 0 3313 3122 * 930 210 0 0 chr1 38497946 38498122 -243695542 + MIR SINE MIR 86 261 -1 333 351 192 3 chr1 38498175 38498516 -243695148 - L2 LINE L2 -229 3084 2689 590 226 77 51 chr1 38498534 38498768 -243694896 + MLT1H LTR MaLR 15 254 -295 * 1975 213 53 28 chr1 38498761 38499255 -243694409 + MER74B LTR ERVL 50 555 -67 373 260 40 10 chr1 38499306 38499406 -243694258 + MLT1H LTR MaLR 245 347 -202 1552 156 0 66 chr1 38499472 38499563 -243694101 - LTR69 LTR ERVL -4 584 489 1917 112 10 23 chr1 38499563 38499866 -243693798 + AluSx SINE Alu 1 299 -13 1552 156 0 66 chr1 38499866 38500063 -243693601 - LTR69 LTR ERVL -99 489 315 2118 259 137 79 chr1 38500063 38501289 -243692375 - L2 LINE L2 -987 2327 1021 1779 144 82 25 chr1 38501289 38501644 -243692020 + THE1C LTR MaLR 1 375 0 2118 259 137 79 chr1 38501644 38501700 -243691964 - L2 LINE L2 -2293 1021 970 2778 99 0 0 chr1 38503615 38503979 -243689685 + THE1B LTR MaLR 1 364 0 232 274 39 59 chr1 38504898 38505000 -243688664 + L2 LINE L2 3208 3307 -6 1486 149 119 75 chr1 38505303 38505732 -243687932 - LTR7 LTR ERV1 -2 448 1 2453 98 48 13 chr1 38505732 38506111 -243687553 - HERVH LTR ERV1 0 7713 7322 1431 111 23 9 chr1 38506109 38506326 -243687338 - HERVH LTR ERV1 -1894 5819 5600 * 4268 155 1 3 chr1 38506330 38506989 -243686675 - HERVH LTR ERV1 -2567 5146 4489 3433 110 6 6 chr1 38506992 38507494 -243686170 - HERVH LTR ERV1 -3720 3993 3492 863 162 20 0 chr1 38507484 38507632 -243686032 - HERVH LTR ERV1 -4423 3290 3140 * 16613 93 24 12 chr1 38507626 38510057 -243683607 - HERVH LTR ERV1 -4726 2987 404 286 29 0 0 chr1 38510058 38510092 -243683572 - LTR7 LTR ERV1 -416 34 1 343 324 10 0 chr1 38510093 38510195 -243683469 - MIR SINE MIR -82 180 78 2522 219 66 57 chr1 38510334 38510626 -243683038 - MER72 LTR ERV1 -2 720 432 2669 95 17 6 chr1 38510626 38510984 -243682680 - THE1B LTR MaLR -2 362 1 2522 219 66 57 chr1 38510984 38511120 -243682544 - MER72 LTR ERV1 -290 432 299 2223 105 0 0 chr1 38511120 38511424 -243682240 - AluSq SINE Alu -9 304 1 2522 219 66 57 chr1 38511424 38511708 -243681956 - MER72 LTR ERV1 -423 299 1 420 263 90 15 chr1 38512677 38512810 -243680854 - MIR SINE MIR -108 154 12 303 28 0 0 chr1 38513495 38513531 -243680133 + (CA)n Simple_repeat Simple_repeat 2 37 0 190 333 0 29 chr1 38513938 38514007 -243679657 + L2 LINE L2 2693 2759 -555 481 276 55 0 chr1 38514053 38514180 -243679484 + MIR SINE MIR 48 181 -81 195 237 0 0 chr1 38514334 38514372 -243679292 + L2 LINE L2 3273 3310 -3 216 0 0 0 chr1 38514800 38514824 -243678840 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 624 202 9 0 chr1 38514834 38514943 -243678721 - FLAM_A SINE Alu -32 110 1 1947 147 3 3 chr1 38515116 38515429 -243678235 - AluSq SINE Alu 0 313 1 708 292 170 18 chr1 38515475 38515858 -243677806 + L2 LINE L2 2537 2977 -337 196 232 145 0 chr1 38516050 38516119 -243677545 - L2 LINE L2 -188 3084 3006 497 269 42 24 chr1 38516367 38516534 -243677130 + MIR SINE MIR 23 192 -70 477 272 69 139 chr1 38517373 38517854 -243675810 + L2 LINE L2 2821 3267 -5 650 261 22 0 chr1 38517922 38518060 -243675604 - MIR SINE MIR -114 148 8 694 225 12 0 chr1 38519807 38519967 -243673697 - MER103 DNA DNA -3 163 2 206 304 120 22 chr1 38520199 38520291 -243673373 - MIR SINE MIR -104 158 58 437 293 46 46 chr1 38520302 38520476 -243673188 + MIR SINE MIR 81 254 -8 355 286 135 28 chr1 38520492 38520744 -243672920 - L3 LINE CR1 -108 1469 1191 772 265 85 9 chr1 38521179 38521402 -243672262 - MIR SINE MIR -22 240 1 184 224 86 17 chr1 38521703 38521761 -243671903 - L2 LINE L2 -64 3249 3188 206 123 0 140 chr1 38522292 38522349 -243671315 + L2 LINE L2 3005 3053 -219 613 234 104 43 chr1 38522386 38522617 -243671047 + MIR SINE MIR 4 248 -14 192 303 15 15 chr1 38523158 38523224 -243670440 + MIR SINE MIR 34 99 -163 832 228 6 0 chr1 38523292 38523454 -243670210 + AluJb SINE Alu 133 295 -17 677 223 4 19 chr1 38523462 38523724 -243669940 + GA-rich Low_complexity Low_complexity 1 258 0 188 290 81 0 chr1 38524152 38524214 -243669450 - MIR SINE MIR -82 180 114 1841 162 3 0 chr1 38524465 38524767 -243668897 + AluSx SINE Alu 1 303 -9 2124 110 3 10 chr1 38524999 38525307 -243668357 - AluSg SINE Alu -4 306 1 334 293 100 61 chr1 38526396 38526625 -243667039 + L2 LINE L2 2810 3047 -225 357 24 0 0 chr1 38527293 38527335 -243666329 + (CA)n Simple_repeat Simple_repeat 1 42 0 203 264 135 98 chr1 38527891 38527930 -243665734 - MIR3 SINE MIR -19 189 153 718 292 10 5 chr1 38527930 38528122 -243665542 + MER117 DNA MER1_type 4 196 -1 203 264 135 98 chr1 38528122 38528245 -243665419 - MIR3 SINE MIR -55 153 21 240 258 13 142 chr1 38528817 38529050 -243664614 - L2 LINE L2 -210 3062 2860 433 292 180 0 chr1 38529132 38529293 -243664371 - MER91A DNA MER1_type -6 190 1 307 245 75 21 chr1 38529374 38529468 -243664196 - MER5A DNA MER1_type -77 112 14 253 304 135 83 chr1 38529592 38529881 -243663783 - L2 LINE L2 -31 3241 2938 1143 205 9 26 chr1 38531738 38531766 -243661898 + L1MC4 LINE L1 6663 6690 -1352 2013 86 72 0 chr1 38531766 38532045 -243661619 + AluSq SINE Alu 1 299 -14 1143 205 9 26 chr1 38532045 38532245 -243661419 + L1MC4 LINE L1 6690 6887 -1155 374 243 164 13 chr1 38532397 38532549 -243661115 + MIR SINE MIR 8 182 -80 4378 104 28 26 chr1 38533056 38533317 -243660347 + MER39B LTR ERV1 1 260 -393 1868 158 3 6 chr1 38533317 38533628 -243660036 + AluJb SINE Alu 1 310 -2 4378 104 28 26 chr1 38533628 38534018 -243659646 + MER39B LTR ERV1 260 653 0 344 158 0 14 chr1 38534680 38534746 -243658918 - Alu SINE Alu -251 51 7 851 258 34 61 chr1 38534834 38535247 -243658417 + MLT1I LTR MaLR 38 409 0 576 270 17 82 chr1 38535247 38535293 -243658371 + L2 LINE L2 2186 2233 -1081 2254 105 0 0 chr1 38535293 38535599 -243658065 - AluSx SINE Alu -6 306 1 576 270 17 82 chr1 38535599 38535785 -243657879 + L2 LINE L2 2233 2403 -911 339 308 246 20 chr1 38535813 38536008 -243657656 + L2 LINE L2 2578 2816 -498 1139 209 23 119 chr1 38536046 38536676 -243656988 + MLT2B3 LTR ERVL 6 518 -2 1458 172 12 120 chr1 38537169 38537538 -243656126 + MLT1A1 LTR MaLR 3 326 -39 1984 126 9 9 chr1 38537538 38537855 -243655809 - L1PA13 LINE L1 -7 6156 5840 1458 172 12 120 chr1 38537855 38537892 -243655772 + MLT1A1 LTR MaLR 326 365 0 351 243 136 0 chr1 38539441 38539544 -243654120 + MIR SINE MIR 43 159 -103 363 248 0 53 chr1 38539547 38539660 -243654004 - LTR33A LTR ERVL 0 523 417 333 343 22 17 chr1 38539788 38539969 -243653695 - MLT2E LTR ERVL -414 214 33 371 267 19 19 chr1 38540043 38540148 -243653516 + MIR SINE MIR 157 261 -1 270 275 0 25 chr1 38541355 38541435 -243652229 - L2 LINE L2 -76 3237 3160 259 276 13 0 chr1 38541513 38541599 -243652065 - L2 LINE L2 -328 2985 2899 186 227 0 0 chr1 38541752 38541796 -243651868 - L2 LINE L2 -357 2957 2914 3769 171 92 76 chr1 38542251 38542336 -243651328 - L1MD2 LINE L1 -3 6356 6274 2355 116 33 30 chr1 38542336 38542699 -243650965 + THE1B LTR MaLR 1 364 0 3769 171 92 76 chr1 38542699 38543751 -243649913 - L1MD2 LINE L1 -85 6274 5200 726 276 75 67 chr1 38543743 38544328 -243649336 - L1MC4a LINE L1 -345 5817 5307 * 1444 158 65 24 chr1 38544328 38544620 -243649044 - THE1C LTR MaLR 0 375 72 3134 188 56 65 chr1 38544621 38546007 -243647657 + MER52A LTR ERV1 17 1278 0 382 141 12 82 chr1 38546007 38546080 -243647584 - THE1C LTR MaLR -295 69 3 418 292 69 0 chr1 38546128 38546330 -243647334 - L1MC4a LINE L1 -868 5278 5063 580 270 153 5 chr1 38546350 38546546 -243647118 + MIR SINE MIR 11 235 -27 759 252 79 57 chr1 38546576 38547088 -243646576 - L1MC4a LINE L1 -1109 5037 4538 306 0 0 0 chr1 38547088 38547122 -243646542 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2028 112 4 0 chr1 38547126 38547404 -243646260 - AluSq SINE Alu -34 279 1 759 252 79 57 chr1 38547404 38547556 -243646108 - L1MC4a LINE L1 -1610 4536 4353 * 2403 292 46 50 chr1 38547530 38548169 -243645495 - L1M4 LINE L1 -1477 4669 4029 2424 57 0 3 chr1 38548169 38548469 -243645195 + AluY SINE Alu 1 299 -12 2403 292 46 50 chr1 38548469 38548607 -243645057 - L1M4 LINE L1 -2117 4029 3892 1630 160 216 17 chr1 38548607 38548964 -243644700 + MSTA LTR MaLR 1 428 0 2403 292 46 50 chr1 38548964 38549796 -243643868 - L1M4 LINE L1 -2254 3892 3063 1280 157 19 5 chr1 38549796 38550012 -243643652 + MER20 DNA MER1_type 1 219 0 2403 292 46 50 chr1 38550012 38550113 -243643551 - L1M4 LINE L1 -3083 3063 2963 563 207 216 29 chr1 38550116 38550324 -243643340 - L1ME1 LINE L1 -20 6146 5900 1206 178 5 5 chr1 38550324 38550537 -243643127 - AluJo SINE Alu -22 290 78 2255 200 66 28 chr1 38550567 38551141 -243642523 - L1ME1 LINE L1 -281 5885 5290 2854 222 48 30 chr1 38551158 38552248 -243641416 - L1ME1 LINE L1 -4 6162 5058 1739 141 57 42 chr1 38552246 38552580 -243641084 - MSTA-int LTR MaLR -1017 634 296 * 1081 127 55 17 chr1 38552581 38552762 -243640902 - MSTA LTR MaLR -240 188 1 7750 165 39 2 chr1 38552762 38554032 -243639632 - MSTA-int LTR MaLR 0 1651 334 1706 158 50 19 chr1 38554032 38554379 -243639285 - MSTA LTR MaLR -75 357 7 358 241 43 26 chr1 38554411 38554527 -243639137 + MIR SINE MIR 114 231 -31 214 298 0 0 chr1 38554557 38554604 -243639060 + L2 LINE L2 3231 3277 -36 317 333 32 0 chr1 38554785 38554911 -243638753 + L2 LINE L2 3125 3254 -18 290 179 0 64 chr1 38555373 38555451 -243638213 + L1MB7 LINE L1 6112 6184 0 295 261 133 8 chr1 38555973 38556099 -243637565 - MIR SINE MIR -54 208 63 1763 157 0 17 chr1 38556655 38556948 -243636716 + AluJo SINE Alu 1 288 -24 582 275 57 10 chr1 38557193 38557386 -243636278 + MIR SINE MIR 37 238 -24 243 310 130 0 chr1 38558241 38558341 -243635323 + MIR SINE MIR 136 248 -14 189 222 0 74 chr1 38558310 38558364 -243635300 + L2 LINE L2 3263 3312 -1 * 709 265 19 14 chr1 38558776 38558987 -243634677 - MLT1G LTR MaLR -347 243 32 1781 147 42 7 chr1 38558994 38559280 -243634384 - MLT1C LTR MaLR -27 440 145 1324 167 32 39 chr1 38559464 38559745 -243633919 + L1MB4 LINE L1 5902 6180 0 542 261 45 40 chr1 38559820 38559996 -243633668 - MIR SINE MIR -41 221 45 225 348 116 13 chr1 38560230 38560385 -243633279 + MIR SINE MIR 66 236 -26 3681 196 17 35 chr1 38560529 38561395 -243632269 - L1ME1 LINE L1 -5 6161 5319 473 208 119 0 chr1 38561395 38561496 -243632168 + MIR SINE MIR 72 184 -78 207 0 0 0 chr1 38561688 38561711 -243631953 + (CAGAG)n Simple_repeat Simple_repeat 3 25 0 420 216 144 18 chr1 38562305 38562472 -243631192 + MER5A DNA MER1_type 1 188 -1 462 281 131 50 chr1 38562550 38562771 -243630893 + MIR SINE MIR 10 248 -14 406 285 62 21 chr1 38562787 38562931 -243630733 - MER91B DNA MER1_type -5 185 36 494 301 27 7 chr1 38564023 38564169 -243629495 + MIR SINE MIR 7 155 -107 2162 145 39 26 chr1 38564217 38564584 -243629080 + L1MB3 LINE L1 5763 6137 -68 2044 128 7 0 chr1 38564584 38564882 -243628782 + AluSx SINE Alu 1 300 -12 2162 145 39 26 chr1 38564882 38564952 -243628712 + L1MB3 LINE L1 6137 6205 0 356 299 19 19 chr1 38565486 38565593 -243628071 + MIR SINE MIR 155 261 -1 289 246 15 0 chr1 38565692 38565757 -243627907 - MIR SINE MIR -115 147 82 296 330 21 0 chr1 38566496 38566593 -243627071 - MER91A DNA MER1_type -41 155 57 240 224 271 0 chr1 38566891 38566976 -243626688 + MIR SINE MIR 34 141 -67 348 306 43 11 chr1 38567837 38568029 -243625635 + LTR16A LTR ERVL 2 196 -254 443 275 135 34 chr1 38568281 38568488 -243625176 - L2 LINE L2 -218 3054 2827 2056 167 7 52 chr1 38568579 38568987 -243624677 - MLT1B LTR MaLR 0 390 1 306 234 196 9 chr1 38569576 38569683 -243623981 + MIR3 SINE MIR 15 141 -67 1046 256 122 48 chr1 38569803 38570236 -243623428 + L2 LINE L2 2845 3309 -4 265 321 24 0 chr1 38570586 38570670 -243622994 + MLT1K LTR MaLR 494 579 -9 1298 165 139 11 chr1 38570900 38571167 -243622497 - AluJb SINE Alu -11 301 1 187 242 10 131 chr1 38571179 38571278 -243622386 + L2 LINE L2 3148 3234 -38 423 217 93 39 chr1 38571898 38572027 -243621637 - MIR3 SINE MIR -58 150 15 193 258 97 0 chr1 38572250 38572312 -243621352 - L2 LINE L2 -1495 1819 1752 1009 249 14 5 chr1 38572424 38572637 -243621027 - MER58A DNA MER1_type 0 224 10 209 231 0 19 chr1 38573849 38573901 -243619763 - MIR SINE MIR -107 155 105 547 278 70 59 chr1 38574046 38574319 -243619345 - Charlie8 DNA MER1_type -2141 276 1 439 291 35 7 chr1 38574341 38574482 -243619182 - MIR SINE MIR -66 196 52 1176 246 81 54 chr1 38574936 38575380 -243618284 + L3 LINE CR1 486 941 -636 274 270 180 22 chr1 38575403 38575581 -243618083 + L1ME4a LINE L1 5693 5898 -223 297 246 127 27 chr1 38575743 38575853 -243617811 + L3 LINE CR1 968 1088 -489 422 290 55 75 chr1 38575890 38575931 -243617733 - MIR SINE MIR -10 252 212 2034 117 3 3 chr1 38575931 38576231 -243617433 - AluSx SINE Alu -12 300 1 422 290 55 75 chr1 38576231 38576389 -243617275 - MIR SINE MIR -50 212 57 376 277 105 50 chr1 38577077 38577315 -243616349 + L3 LINE CR1 1265 1515 -62 230 314 41 41 chr1 38577342 38577463 -243616201 + L2 LINE L2 3150 3270 -2 182 304 139 25 chr1 38577443 38577522 -243616142 + L3 LINE CR1 1487 1574 -3 * 262 188 0 62 chr1 38577574 38577638 -243616026 - MER69 DNA AcHobo -91 2435 2376 268 275 40 27 chr1 38577933 38578082 -243615582 - L1ME LINE L1 -349 5772 5622 536 296 109 30 chr1 38579384 38579614 -243614050 - MIR SINE MIR -13 249 2 1407 160 38 48 chr1 38580047 38580086 -243613578 - MER33 DNA MER1_type -2273 312 274 2193 83 10 3 chr1 38580086 38580386 -243613278 - AluSx SINE Alu -10 302 1 1407 160 38 48 chr1 38580386 38580659 -243613005 - MER33 DNA MER1_type -2311 274 3 2207 92 0 10 chr1 38580786 38581091 -243612573 + AluSx SINE Alu 5 306 -6 869 236 121 43 chr1 38581287 38581609 -243612055 - MER7A DNA MER2_type 0 346 2 503 303 98 41 chr1 38581642 38581886 -243611778 - MIR SINE MIR 0 262 5 308 323 25 38 chr1 38582157 38582315 -243611349 - L2 LINE L2 -540 2774 2619 713 253 40 8 chr1 38582886 38583088 -243610576 + MLT1L LTR MaLR 382 615 0 964 280 85 33 chr1 38583466 38583950 -243609714 - MLT1J LTR MaLR -2 473 2 188 318 206 29 chr1 38584344 38584693 -243608971 + L2 LINE L2 1706 2116 -1198 469 204 39 0 chr1 38584765 38584868 -243608796 + MIR SINE MIR 47 153 -109 790 242 161 51 chr1 38584884 38585276 -243608388 - MLT1J2 LTR MaLR 0 450 16 180 302 104 10 chr1 38585281 38585377 -243608287 + MIR SINE MIR 156 260 -2 2023 111 12 49 chr1 38586244 38586568 -243607096 - AluSx SINE Alu 0 312 1 268 287 47 118 chr1 38588205 38588543 -243605121 + L2 LINE L2 2915 3228 -44 787 282 26 18 chr1 38588566 38588793 -243604871 + MIR SINE MIR 3 231 -31 361 250 10 29 chr1 38588994 38589098 -243604566 + MIR SINE MIR 12 113 -149 304 299 82 22 chr1 38589164 38589298 -243604366 - L2 LINE L2 -199 3073 2932 253 254 42 14 chr1 38589431 38589502 -243604162 + L2 LINE L2 3241 3313 0 567 299 69 23 chr1 38590567 38590784 -243602880 + MIR SINE MIR 34 260 -2 3389 49 2 7 chr1 38590852 38591279 -243602385 - L1PA8 LINE L1 -1 6171 5747 268 268 52 21 chr1 38591546 38591643 -243602021 - MER5B DNA MER1_type -19 159 60 485 238 66 48 chr1 38591711 38591947 -243601717 - MLT1J LTR MaLR -8 503 224 455 281 30 7 chr1 38591973 38592108 -243601556 - MLT1J LTR MaLR -341 170 33 487 278 127 24 chr1 38592265 38592477 -243601187 + MIR SINE MIR 23 256 -6 354 222 55 3 chr1 38592988 38593084 -243600580 + MER5A DNA MER1_type 9 98 -80 206 339 0 0 chr1 38593467 38593529 -243600135 + MIR SINE MIR 201 262 0 * 249 254 45 0 chr1 38593521 38593588 -243600076 + MIR SINE MIR 68 137 -71 202 351 95 22 chr1 38593692 38593914 -243599750 - L2 LINE L2 -341 2973 2736 330 331 47 1 chr1 38594127 38594253 -243599411 - L2 LINE L2 0 3313 3184 346 269 150 31 chr1 38595343 38595503 -243598161 + L1ME LINE L1 5576 5754 -367 631 212 224 29 chr1 38595520 38595761 -243597903 + LTR50 LTR ERVL 1 288 -507 673 214 93 14 chr1 38595880 38596095 -243597569 + LTR33A LTR ERVL 292 523 0 453 286 94 36 chr1 38596095 38596566 -243597098 + L1ME4a LINE L1 5441 5963 -207 674 125 9 0 chr1 38596703 38596815 -243596849 + (TTCC)n Simple_repeat Simple_repeat 3 115 0 1133 144 11 6 chr1 38596817 38596991 -243596673 - AluSg/x SINE Alu -1 311 137 269 26 26 0 chr1 38597261 38597299 -243596365 + (TG)n Simple_repeat Simple_repeat 1 39 0 475 236 28 14 chr1 38597302 38597446 -243596218 + L1ME4a LINE L1 5965 6110 -11 695 296 72 23 chr1 38597701 38598171 -243595493 + L1MC4a LINE L1 4886 5378 -768 424 248 0 83 chr1 38598181 38598338 -243595326 + L1ME3 LINE L1 6014 6157 -5 24 32 0 0 chr1 38598623 38598654 -243595010 + AT_rich Low_complexity Low_complexity 1 31 0 406 178 33 0 chr1 38598787 38598877 -243594787 - MER117 DNA MER1_type -50 147 55 345 203 25 25 chr1 38598971 38599050 -243594614 - MIR3 SINE MIR -54 154 76 453 295 167 5 chr1 38599829 38600039 -243593625 - MIR SINE MIR 0 262 19 456 321 6 19 chr1 38600070 38600229 -243593435 + MER5A DNA MER1_type 33 189 0 325 252 87 0 chr1 38600269 38600372 -243593292 - MLT1G LTR MaLR 0 590 479 * 782 234 29 0 chr1 38600369 38600540 -243593124 - MLT1G1 LTR MaLR -418 177 2 808 275 74 30 chr1 38600937 38601301 -243592363 + L1MC4a LINE L1 5549 5928 -1880 930 239 23 34 chr1 38601402 38601665 -243591999 - MIR SINE MIR 0 262 3 2246 122 7 0 chr1 38601729 38602033 -243591631 + AluSx SINE Alu 1 306 -6 227 279 22 34 chr1 38603833 38604012 -243589652 + (CA)n Simple_repeat Simple_repeat 1 177 0 938 299 130 15 chr1 38604299 38604975 -243588689 + L2 LINE L2 2396 3205 -108 844 171 36 99 chr1 38604975 38605197 -243588467 - MER3 DNA MER1_type -1 208 1 938 299 130 15 chr1 38605197 38605315 -243588349 + L2 LINE L2 3205 3308 -5 505 282 50 22 chr1 38605605 38605786 -243587878 + MIR SINE MIR 18 203 -59 2160 119 73 14 chr1 38606263 38606607 -243587057 - THE1B LTR MaLR 0 364 1 837 256 61 8 chr1 38606666 38606895 -243586769 + MIR SINE MIR 2 246 -16 2174 80 6 98 chr1 38606895 38607222 -243586442 - AluSg SINE Alu -13 297 1 837 256 61 8 chr1 38607222 38607238 -243586426 + MIR SINE MIR 246 260 -2 1672 187 199 2 chr1 38607957 38608379 -243585285 + MLT1D LTR MaLR 1 505 0 587 251 50 6 chr1 38608403 38608582 -243585082 - L2 LINE L2 -4 3309 3123 281 182 0 18 chr1 38608686 38608741 -243584923 - L2 LINE L2 -9 3263 3210 529 294 139 5 chr1 38608918 38609079 -243584585 - MIR SINE MIR -4 258 63 2177 127 0 0 chr1 38609079 38609370 -243584294 - AluSg SINE Alu -19 291 1 529 294 139 5 chr1 38609370 38609409 -243584255 - MIR SINE MIR -199 63 31 180 0 0 0 chr1 38609691 38609711 -243583953 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 221 312 13 0 chr1 38609711 38609788 -243583876 - L2 LINE L2 -13 3259 3182 208 271 197 8 chr1 38609911 38610033 -243583631 - L2 LINE L2 -260 3012 2868 2354 125 0 0 chr1 38611000 38611312 -243582352 + AluSx SINE Alu 1 312 0 950 255 9 9 chr1 38611448 38611664 -243582000 + MIR SINE MIR 47 262 0 207 189 0 0 chr1 38611777 38611830 -243581834 + (TA)n Simple_repeat Simple_repeat 2 54 0 189 298 144 29 chr1 38612002 38612106 -243581558 - MIR3 SINE MIR -9 199 84 734 181 43 53 chr1 38612841 38613029 -243580635 + MER5A DNA MER1_type 1 186 -3 523 242 38 25 chr1 38613388 38613545 -243580119 - MER5B DNA MER1_type 0 178 20 456 296 47 6 chr1 38613553 38613725 -243579939 - MIR SINE MIR -67 195 17 538 345 45 39 chr1 38614581 38614722 -243578942 - L2 LINE L2 -1 3271 3132 306 0 0 0 chr1 38614722 38614756 -243578908 + (CA)n Simple_repeat Simple_repeat 2 35 0 261 0 0 0 chr1 38614755 38614784 -243578880 + (TC)n Simple_repeat Simple_repeat 1 29 0 * 538 345 45 39 chr1 38614756 38614999 -243578665 - L2 LINE L2 -140 3132 2913 186 276 48 38 chr1 38616012 38616117 -243577547 + L2 LINE L2 2742 2847 -467 444 300 33 17 chr1 38616894 38617074 -243576590 - L2 LINE L2 0 3313 3131 1657 178 196 60 chr1 38617157 38617547 -243576117 + MLT1F1 LTR MaLR 1 469 -98 1226 192 30 15 chr1 38617547 38617818 -243575846 - ORSL DNA AcHobo 0 275 1 1657 178 196 60 chr1 38617818 38617906 -243575758 + MLT1F1 LTR MaLR 469 544 -23 297 261 235 17 chr1 38618018 38618137 -243575527 + MIR SINE MIR 98 242 -20 207 139 0 0 chr1 38618881 38618917 -243574747 + (CA)n Simple_repeat Simple_repeat 1 36 0 412 278 167 0 chr1 38619183 38619345 -243574319 - MIR SINE MIR -73 189 1 387 193 141 13 chr1 38619774 38619929 -243573735 + MIR SINE MIR 76 259 -3 539 164 217 13 chr1 38620231 38620383 -243573281 - L1MD3 LINE L1 0 7995 7813 429 88 0 0 chr1 38620657 38620725 -243572939 + L1PA5 LINE L1 6087 6154 0 378 263 81 0 chr1 38620725 38620824 -243572840 + MIR SINE MIR 22 128 -134 446 306 66 22 chr1 38621838 38622021 -243571643 + MIR SINE MIR 1 191 -71 617 270 88 5 chr1 38622058 38622262 -243571402 - Charlie8 DNA MER1_type -2196 221 1 1054 195 90 100 chr1 38622584 38622984 -243570680 + MSTD LTR MaLR 1 396 0 194 297 44 44 chr1 38622995 38623086 -243570578 - MIR SINE MIR -70 192 102 * 298 149 0 0 chr1 38623085 38623132 -243570532 - L2 LINE L2 -6 3307 3261 370 306 88 62 chr1 38623164 38623583 -243570081 - MLT1K LTR MaLR -18 570 141 1798 225 37 5 chr1 38623680 38624084 -243569580 - LTR16C LTR ERVL 0 491 75 385 257 53 20 chr1 38624838 38624987 -243568677 - MIR SINE MIR -55 153 45 791 148 136 12 chr1 38625160 38625322 -243568342 - MSTD LTR MaLR -214 182 1 377 319 85 48 chr1 38625586 38625727 -243567937 + L2 LINE L2 3008 3142 -171 378 0 0 0 chr1 38625727 38625769 -243567895 + (TG)n Simple_repeat Simple_repeat 2 43 0 377 319 85 48 chr1 38625769 38625922 -243567742 + L2 LINE L2 3142 3313 0 683 264 6 0 chr1 38625998 38626157 -243567507 + MIR SINE MIR 17 176 -86 3271 195 20 0 chr1 38626416 38627056 -243566608 - MER82 DNA MER2_type 0 653 1 341 305 34 0 chr1 38627301 38627419 -243566245 + L2 LINE L2 2930 3051 -221 334 190 50 60 chr1 38627591 38627691 -243565973 - L2 LINE L2 -2 3311 3213 191 254 17 17 chr1 38628103 38628162 -243565502 - MIR SINE MIR -10 252 194 500 235 140 12 chr1 38628177 38628347 -243565317 - MIR SINE MIR -21 241 43 1070 247 8 4 chr1 38629290 38629529 -243564135 + MIR SINE MIR 22 261 -1 579 295 80 21 chr1 38630566 38630803 -243562861 + MIR SINE MIR 12 262 0 206 347 65 42 chr1 38631786 38632002 -243561662 + MIR SINE MIR 31 251 -11 274 264 275 6 chr1 38632274 38632452 -243561212 + MIR SINE MIR 34 259 -3 353 292 117 15 chr1 38633517 38633654 -243560010 - L2 LINE L2 -1 3271 3121 310 317 92 14 chr1 38634453 38634595 -243559069 + MIR SINE MIR 29 181 -81 239 349 82 13 chr1 38636397 38636712 -243556952 + L2 LINE L2 2212 2548 -766 192 244 69 50 chr1 38636871 38637031 -243556633 + L2 LINE L2 2818 2980 -292 281 186 0 17 chr1 38637520 38637579 -243556085 - LTR16A1 LTR ERVL 0 457 400 584 171 90 0 chr1 38637785 38637896 -243555768 - LTR16A1 LTR ERVL -336 121 1 184 327 173 5 chr1 38638403 38638611 -243555053 + L2 LINE L2 604 846 -2468 766 300 208 15 chr1 38638634 38639417 -243554247 - L2 LINE L2 -20 3252 2315 3487 281 151 31 chr1 38639419 38641742 -243551922 + L2 LINE L2 600 3228 -85 2713 45 0 0 chr1 38641742 38642051 -243551613 + AluY SINE Alu 1 309 -2 3487 281 151 31 chr1 38642051 38642138 -243551526 + L2 LINE L2 3228 3303 -10 243 211 174 28 chr1 38642147 38642256 -243551408 - L2 LINE L2 -992 2322 2198 21 0 0 0 chr1 38642824 38642845 -243550819 + AT_rich Low_complexity Low_complexity 1 21 0 405 306 128 35 chr1 38643041 38643557 -243550107 - L2 LINE L2 -1063 2251 1688 457 347 8 0 chr1 38643770 38643894 -243549770 + L2 LINE L2 3138 3262 -10 1033 326 130 26 chr1 38643918 38644771 -243548893 + L2 LINE L2 1054 1995 -1319 382 251 52 52 chr1 38645031 38645242 -243548422 + MLT1K LTR MaLR 378 588 0 658 288 69 44 chr1 38645246 38645479 -243548185 + L2 LINE L2 2016 2261 -1053 3137 198 10 31 chr1 38645479 38645607 -243548057 - L1MB4 LINE L1 0 6180 6051 1608 111 134 15 chr1 38645607 38645869 -243547795 - AluSg SINE Alu -17 293 1 3137 198 10 31 chr1 38645869 38646422 -243547242 - L1MB4 LINE L1 -129 6051 5513 658 288 69 44 chr1 38646422 38646507 -243547157 + L2 LINE L2 2261 2342 -972 3698 55 4 0 chr1 38646722 38647176 -243546488 + L1PA8 LINE L1 5708 6163 -9 180 0 0 0 chr1 38647185 38647205 -243546459 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2054 112 16 0 chr1 38647213 38647517 -243546147 + L1PB2 LINE L1 5840 6148 -3 210 325 38 0 chr1 38647611 38647691 -243545973 + L2 LINE L2 2365 2447 -867 * 211 146 24 24 chr1 38647680 38647721 -243545943 + L3 LINE CR1 682 722 -855 3105 247 97 95 chr1 38648213 38649097 -243544567 - L2 LINE L2 0 3313 2432 2663 58 0 3 chr1 38649097 38649407 -243544257 - AluSc SINE Alu 0 309 1 3105 247 97 95 chr1 38649407 38649436 -243544228 - L2 LINE L2 -881 2432 2405 287 103 0 118 chr1 38649436 38649504 -243544160 - MER53 DNA DNA -129 60 1 3105 247 97 95 chr1 38649504 38650361 -243543303 - L2 LINE L2 -908 2405 1477 247 236 0 92 chr1 38651097 38651292 -243542372 + (CCA)n Simple_repeat Simple_repeat 3 179 0 206 305 0 26 chr1 38651327 38651478 -243542186 + (CCA)n Simple_repeat Simple_repeat 3 149 0 521 297 112 7 chr1 38651757 38652069 -243541595 - L2 LINE L2 -249 3064 2714 648 75 0 0 chr1 38652070 38652150 -243541514 + MADE1 DNA Mariner 1 80 0 1311 257 89 48 chr1 38652175 38653021 -243540643 + L1MC4a LINE L1 5039 5403 -743 810 275 269 7 chr1 38653115 38653562 -243540102 - L2 LINE L2 -1012 2302 1739 554 287 90 16 chr1 38653723 38653911 -243539753 + MIR SINE MIR 32 233 -29 451 209 45 18 chr1 38653964 38654074 -243539590 + MER94 DNA DNA 2 114 -20 575 204 84 76 chr1 38654316 38654541 -243539123 + L1MC4a LINE L1 5690 5916 -1892 366 270 124 15 chr1 38655992 38656129 -243537535 - MIR SINE MIR -98 164 13 467 185 169 79 chr1 38656406 38656595 -243537069 - L2 LINE L2 0 3313 3108 1086 165 0 0 chr1 38656599 38656769 -243536895 + AluJb SINE Alu 129 298 -14 538 253 41 20 chr1 38656799 38656945 -243536719 - L2 LINE L2 -240 3073 2925 301 245 338 0 chr1 38657002 38657141 -243536523 - L2 LINE L2 -558 2756 2571 437 304 30 0 chr1 38657504 38657639 -243536025 + MIR SINE MIR 44 182 -80 257 300 211 0 chr1 38657706 38657796 -243535868 + MIR SINE MIR 14 122 -140 208 222 0 0 chr1 38657804 38657840 -243535824 - MIR SINE MIR -3 259 224 491 279 29 7 chr1 38657863 38658003 -243535661 + MIR SINE MIR 120 262 0 736 215 74 6 chr1 38658035 38658198 -243535466 + MIR SINE MIR 75 248 -14 230 198 25 0 chr1 38659967 38660048 -243533616 + (CTGGGG)n Simple_repeat Simple_repeat 4 86 0 456 211 0 21 chr1 38660976 38661071 -243532593 - LTR33 LTR ERVL 0 521 429 433 205 291 0 chr1 38661138 38661289 -243532375 - LTR33 LTR ERVL -324 197 3 1442 163 123 21 chr1 38662029 38662354 -243531310 + MLT1A1 LTR MaLR 4 361 -4 1104 212 137 43 chr1 38662741 38663126 -243530538 + L2 LINE L2 2658 3122 -191 2484 86 0 3 chr1 38663126 38663430 -243530234 + AluSc SINE Alu 1 303 -6 1104 212 137 43 chr1 38663430 38663619 -243530045 + L2 LINE L2 3122 3292 -21 301 104 0 0 chr1 38663619 38663667 -243529997 + MADE1 DNA Mariner 33 80 0 303 277 176 85 chr1 38663709 38663806 -243529858 - L2 LINE L2 -52 3220 3133 955 144 29 0 chr1 38663806 38663980 -243529684 + L1MB2 LINE L1 5991 6169 -2 303 277 176 85 chr1 38663980 38664257 -243529407 - L2 LINE L2 -139 3133 2812 189 111 22 89 chr1 38664649 38664694 -243528970 + MER5A DNA MER1_type 86 127 -62 486 257 117 28 chr1 38665160 38665339 -243528325 - MIR SINE MIR -5 257 63 252 310 146 53 chr1 38665435 38665716 -243527948 + L2 LINE L2 2941 3247 -25 280 243 14 0 chr1 38666391 38666465 -243527199 + C-rich Low_complexity Low_complexity 3 77 0 485 290 77 0 chr1 38666735 38666904 -243526760 - MIR SINE MIR -72 190 9 212 283 100 33 chr1 38669862 38669982 -243523682 - L2 LINE L2 -225 3047 2920 341 322 130 0 chr1 38670619 38670765 -243522899 + MIR SINE MIR 84 248 -14 2547 155 44 11 chr1 38671401 38671853 -243521811 - MLT1C LTR MaLR 0 467 1 408 222 92 59 chr1 38672049 38672202 -243521462 + MIR3 SINE MIR 2 159 -49 239 313 209 36 chr1 38672708 38672880 -243520784 - L3 LINE CR1 -252 1325 1184 2484 94 0 0 chr1 38672880 38673187 -243520477 - AluSx SINE Alu -5 307 1 239 313 209 36 chr1 38673187 38673321 -243520343 - L3 LINE CR1 -393 1184 966 730 238 145 39 chr1 38673400 38673787 -243519877 - L1ME4a LINE L1 -95 6026 5599 484 257 117 11 chr1 38673868 38674047 -243519617 + HAL1 LINE L1 279 476 -2031 433 96 18 3 chr1 38674053 38674282 -243519382 + AluSx SINE Alu 1 303 -9 488 278 32 0 chr1 38674284 38674410 -243519254 + HAL1 LINE L1 489 618 -1889 455 305 51 23 chr1 38674437 38674614 -243519050 - L2 LINE L2 -189 3083 2902 273 298 24 0 chr1 38674626 38674710 -243518954 - L1ME4a LINE L1 -524 5597 5512 1859 156 0 4 chr1 38674856 38675132 -243518532 - AluJb SINE Alu -37 275 1 394 316 140 16 chr1 38675143 38675336 -243518328 - L1ME4a LINE L1 -754 5392 5176 21 0 0 0 chr1 38675410 38675431 -243518233 + AT_rich Low_complexity Low_complexity 1 21 0 302 288 141 60 chr1 38675544 38675728 -243517936 - L1ME4a LINE L1 -1213 4933 4735 1620 0 0 0 chr1 38675733 38675934 -243517730 + (GTTTG)n Simple_repeat Simple_repeat 1 201 0 1863 143 3 7 chr1 38675950 38676236 -243517428 - AluJo SINE Alu -26 286 2 607 304 15 0 chr1 38676298 38676499 -243517165 + HAL1 LINE L1 608 811 -1696 1352 121 5 15 chr1 38676613 38676819 -243516845 - L1MC1 LINE L1 -17 6316 6113 1883 218 107 52 chr1 38676823 38677577 -243516087 + HAL1 LINE L1 803 1598 -909 366 364 24 34 chr1 38677949 38678158 -243515506 - L3 LINE CR1 -653 924 718 2247 112 0 0 chr1 38678965 38679252 -243514412 + AluSx SINE Alu 1 287 -25 1224 156 45 159 chr1 38680172 38680594 -243513070 - MLT1A2 LTR MaLR 0 374 1 299 106 21 0 chr1 38680594 38680641 -243513023 - MLT1A1-int LTR MaLR 0 1735 1688 357 96 0 0 chr1 38680641 38680693 -243512971 - MADE1 DNA Mariner -28 52 1 1817 142 77 3 chr1 38680698 38681009 -243512655 - MLT1A1-int LTR MaLR -51 1684 1351 1281 128 0 0 chr1 38681009 38681173 -243512491 + AluSg SINE Alu 1 164 -146 991 113 0 0 chr1 38681314 38681447 -243512217 + AluSg SINE Alu 173 305 -7 6235 190 20 64 chr1 38681447 38682601 -243511063 - MLT1A1-int LTR MaLR -378 1357 276 1808 185 0 0 chr1 38682601 38682899 -243510765 - AluJo SINE Alu -13 299 2 6235 190 20 64 chr1 38682899 38683164 -243510500 - MLT1A1-int LTR MaLR -1459 276 1 1281 189 45 126 chr1 38683164 38683561 -243510103 - MLT1A1 LTR MaLR 0 365 1 366 291 24 16 chr1 38683588 38683715 -243509949 + LTR67 LTR ERVL 428 555 -2 222 222 19 0 chr1 38683749 38683803 -243509861 - L3 LINE CR1 -904 673 619 600 275 8 0 chr1 38683916 38684047 -243509617 - L2 LINE L2 -4 3268 3137 3957 90 19 2 chr1 38684289 38684831 -243508833 + L1PA11 LINE L1 5624 6174 0 743 279 147 92 chr1 38684834 38684981 -243508683 + L1MEd LINE L1 67 204 -5915 2098 131 7 3 chr1 38684981 38685271 -243508393 - AluSx SINE Alu -21 291 1 743 279 147 92 chr1 38685271 38685517 -243508147 + L1MEd LINE L1 204 435 -5684 2187 118 3 31 chr1 38685517 38685838 -243507826 - AluSx SINE Alu 0 312 1 743 279 147 92 chr1 38685838 38686137 -243507527 + L1MEd LINE L1 435 798 -5321 2249 116 0 0 chr1 38686168 38686501 -243507163 + AluSx SINE Alu 1 312 0 251 293 65 46 chr1 38686505 38686818 -243506846 + MLT1I LTR MaLR 1 299 -110 * 281 220 87 116 chr1 38686796 38686969 -243506695 + MLT1H LTR MaLR 359 526 -23 4447 249 60 45 chr1 38687193 38688266 -243505398 + L1ME1 LINE L1 81 1136 -5260 2539 57 0 0 chr1 38688266 38688562 -243505102 + AluY SINE Alu 7 302 -9 4447 249 60 45 chr1 38688562 38689009 -243504655 + L1ME1 LINE L1 1136 1574 -4822 1732 176 28 14 chr1 38689009 38689366 -243504298 + L1MB7 LINE L1 5818 6179 -5 4447 249 60 45 chr1 38689366 38689588 -243504076 + L1ME1 LINE L1 1574 1791 -4605 1773 183 30 0 chr1 38689588 38689888 -243503776 + AluJo SINE Alu 1 309 -3 4447 249 60 45 chr1 38689888 38690163 -243503501 + L1ME1 LINE L1 1791 2132 -4264 1430 159 25 138 chr1 38690182 38690616 -243503048 + L1MD1 LINE L1 147 531 -6009 302 205 24 12 chr1 38690612 38690695 -243502969 + L1P LINE L1 4157 4240 -1906 * 5205 187 50 37 chr1 38690681 38690835 -243502829 + L1MD1 LINE L1 4704 4855 -1781 2159 130 0 0 chr1 38690835 38691136 -243502528 + AluSx SINE Alu 10 310 -2 5205 187 50 37 chr1 38691136 38691600 -243502064 + L1MD1 LINE L1 4855 5312 -1324 324 0 0 0 chr1 38691600 38691636 -243502028 + (TAA)n Simple_repeat Simple_repeat 2 37 0 5205 187 50 37 chr1 38691636 38691937 -243501727 + L1MD1 LINE L1 5312 5608 -1028 999 176 6 0 chr1 38691937 38692096 -243501568 + FRAM SINE Alu 1 160 -6 5205 187 50 37 chr1 38692096 38692253 -243501411 + L1MD1 LINE L1 5608 5762 -874 2131 115 0 14 chr1 38692253 38692587 -243501077 + AluSx SINE Alu 1 330 0 5205 187 50 37 chr1 38692587 38693392 -243500272 + L1MD1 LINE L1 5762 6636 0 * 6842 217 100 70 chr1 38693388 38694485 -243499179 + L1ME1 LINE L1 2120 3182 -3049 1720 206 7 0 chr1 38694485 38694781 -243498883 + AluJb SINE Alu 11 308 -4 6842 217 100 70 chr1 38694781 38695317 -243498347 + L1ME1 LINE L1 3182 3700 -2531 956 168 0 19 chr1 38695317 38695478 -243498186 + AluSg/x SINE Alu 133 290 -19 6842 217 100 70 chr1 38695478 38696870 -243496794 + L1ME1 LINE L1 3700 5564 -667 684 180 27 7 chr1 38696856 38697006 -243496658 + L1ME1 LINE L1 5895 6047 -188 * 277 191 48 129 chr1 38697006 38697153 -243496511 + MIR SINE MIR 124 258 -4 755 267 124 50 chr1 38697172 38697591 -243496073 + MLT1J2 LTR MaLR 1 450 0 203 416 8 0 chr1 38697835 38697960 -243495704 + MIR3 SINE MIR 3 128 -80 443 209 64 9 chr1 38697984 38698094 -243495570 + MIR SINE MIR 117 232 -30 534 282 97 15 chr1 38698357 38698552 -243495112 - MIR SINE MIR 0 262 52 461 321 21 46 chr1 38699521 38699761 -243493903 - MIR SINE MIR -14 248 15 887 200 95 162 chr1 38699927 38700453 -243493211 - LTR16C LTR ERVL 0 491 1 892 217 11 0 chr1 38701144 38701319 -243492345 + MER97c DNA MER1_type? 1 177 -913 313 296 43 9 chr1 38701362 38701477 -243492187 - MER117 DNA MER1_type -24 173 55 504 284 85 28 chr1 38701910 38702086 -243491578 + L2 LINE L2 3122 3307 -6 362 302 14 36 chr1 38702412 38702551 -243491113 + MIR SINE MIR 79 214 -48 1250 291 74 12 chr1 38702738 38703143 -243490521 + MLT1H LTR MaLR 13 442 -107 250 288 206 12 chr1 38703265 38703425 -243490239 - L3 LINE CR1 -107 1470 1280 2188 92 53 0 chr1 38703902 38704186 -243489478 - AluSx SINE Alu -13 299 1 1236 128 55 48 chr1 38704186 38704348 -243489316 + LTR45B LTR ERV1 24 183 -306 2376 89 0 0 chr1 38704348 38704641 -243489023 + AluY SINE Alu 1 293 -18 1236 128 55 48 chr1 38704641 38704820 -243488844 + LTR45B LTR ERV1 183 409 -80 379 227 127 27 chr1 38704937 38705087 -243488577 + MER103 DNA DNA 2 166 0 222 171 24 0 chr1 38705146 38705187 -243488477 - MIR3 SINE MIR -48 160 119 366 227 49 11 chr1 38705555 38705670 -243487994 + MIR SINE MIR 23 141 -67 203 160 40 20 chr1 38705938 38705988 -243487676 - L2 LINE L2 -5 3267 3217 266 104 0 21 chr1 38705996 38706044 -243487620 + (CA)n Simple_repeat Simple_repeat 1 47 0 423 299 16 90 chr1 38706093 38706337 -243487327 + L2 LINE L2 2954 3179 -93 1883 172 78 47 chr1 38706620 38706807 -243486857 + MLT1D LTR MaLR 2 182 -323 2106 136 14 0 chr1 38706807 38707102 -243486562 + AluJb SINE Alu 1 299 -13 1883 172 78 47 chr1 38707102 38707403 -243486261 + MLT1D LTR MaLR 182 505 0 1017 175 0 0 chr1 38707541 38707707 -243485957 - FRAM SINE Alu 0 166 1 2283 117 7 0 chr1 38707723 38708032 -243485632 - AluSx SINE Alu -1 311 1 1022 247 63 0 chr1 38708212 38708451 -243485213 - MIR SINE MIR -4 258 5 318 295 40 101 chr1 38708518 38708560 -243485104 - L2 LINE L2 -50 3222 3179 1748 178 0 3 chr1 38708560 38708846 -243484818 + AluJo SINE Alu 21 305 -7 318 295 40 101 chr1 38708846 38709081 -243484583 - L2 LINE L2 -93 3179 2962 218 250 40 30 chr1 38709104 38709204 -243484460 + (CAGAGA)n Simple_repeat Simple_repeat 2 102 0 2178 94 0 4 chr1 38710051 38710326 -243483338 - AluSx SINE Alu -18 294 21 201 288 12 12 chr1 38710343 38710423 -243483241 - L3 LINE CR1 -662 915 836 233 330 34 0 chr1 38710503 38710591 -243483073 + L3 LINE CR1 1439 1529 -48 2331 96 3 0 chr1 38710678 38710971 -243482693 + AluSx SINE Alu 1 294 -18 2194 105 20 3 chr1 38712331 38712626 -243481038 + AluSg SINE Alu 1 300 -10 848 125 25 0 chr1 38712627 38712787 -243480877 + GA-rich Low_complexity Low_complexity 1 164 0 701 118 8 0 chr1 38712761 38712880 -243480784 + (GAGAA)n Simple_repeat Simple_repeat 3 122 0 * 198 302 52 52 chr1 38713804 38713920 -243479744 + MIR SINE MIR 30 145 -63 649 179 259 0 chr1 38715144 38715306 -243478358 + MER3 DNA MER1_type 1 204 -5 558 292 49 5 chr1 38715477 38715662 -243478002 - MIR SINE MIR -59 203 11 370 363 58 22 chr1 38716078 38716304 -243477360 - MIR SINE MIR -6 256 23 431 310 150 18 chr1 38716967 38717241 -243476423 - L3b LINE CR1 -95 1488 1179 330 236 150 8 chr1 38717475 38717602 -243476062 - MIR SINE MIR -79 183 39 446 319 74 0 chr1 38718168 38718331 -243475333 + MIR SINE MIR 21 195 -67 1808 171 26 36 chr1 38719398 38719784 -243473880 + MLT1B LTR MaLR 9 390 0 632 248 124 5 chr1 38720252 38720470 -243473194 - MIR SINE MIR -1 261 18 338 276 163 0 chr1 38721847 38721970 -243471694 - L2 LINE L2 -1 3271 3129 447 270 123 6 chr1 38722568 38722731 -243470933 - MIR SINE MIR -34 228 47 308 292 110 67 chr1 38722702 38723048 -243470616 - L2 LINE L2 -947 2367 2007 * 2662 61 0 6 chr1 38723206 38723519 -243470145 + AluY SINE Alu 1 311 0 230 214 71 0 chr1 38724203 38724259 -243469405 - MIR SINE MIR -62 146 87 225 175 191 0 chr1 38724638 38724701 -243468963 + MIR SINE MIR 154 228 -34 631 255 93 10 chr1 38724721 38724925 -243468739 - MIR SINE MIR -40 222 2 198 0 0 0 chr1 38725969 38725991 -243467673 + (A)n Simple_repeat Simple_repeat 1 22 0 297 310 99 35 chr1 38726030 38726172 -243467492 + Charlie8 DNA MER1_type 2 152 -2265 240 213 191 32 chr1 38726211 38726305 -243467359 + Charlie8 DNA MER1_type 136 244 -2173 258 285 169 55 chr1 38726930 38727208 -243466456 + L1ME4a LINE L1 5543 5788 -333 2299 103 0 0 chr1 38727208 38727521 -243466143 + AluSg SINE Alu 1 310 0 2197 122 0 7 chr1 38727530 38727834 -243465830 + AluSx SINE Alu 2 303 -9 1605 148 16 4 chr1 38727838 38728081 -243465583 + AluJb SINE Alu 44 289 -23 258 285 169 55 chr1 38728081 38728295 -243465369 + L1ME4a LINE L1 5797 6108 -13 2126 83 72 7 chr1 38729589 38729865 -243463799 - AluSg1 SINE Alu -15 294 1 276 83 0 0 chr1 38730436 38730472 -243463192 + Alu SINE Alu 10 45 -256 1124 105 0 0 chr1 38730472 38730615 -243463049 + AluSg/x SINE Alu 156 298 -14 240 35 0 0 chr1 38730746 38730775 -243462889 + (GGGTG)n Simple_repeat Simple_repeat 3 31 0 399 239 28 46 chr1 38730922 38731031 -243462633 - MIR SINE MIR -1 261 155 2157 115 0 29 chr1 38731247 38731594 -243462070 - MER1B DNA MER1_type 0 337 1 24 0 0 0 chr1 38731612 38731636 -243462028 + AT_rich Low_complexity Low_complexity 1 24 0 478 254 74 60 chr1 38731657 38731874 -243461790 - MIR SINE MIR -23 239 20 196 298 18 0 chr1 38732283 38732340 -243461324 - L2 LINE L2 0 3272 3215 289 288 43 58 chr1 38732348 38732487 -243461177 + L2 LINE L2 3136 3272 0 490 241 92 23 chr1 38733621 38733795 -243459869 + MIR SINE MIR 77 262 0 2254 92 27 0 chr1 38734085 38734379 -243459285 - AluSp SINE Alu -11 302 1 2224 118 7 3 chr1 38734381 38734678 -243458986 - AluJb SINE Alu -14 298 1 1699 176 140 80 chr1 38734876 38735449 -243458215 - LTR48B LTR ERV1 -37 607 1 318 342 55 42 chr1 38735556 38735793 -243457871 - L2 LINE L2 -41 3231 2992 563 274 135 13 chr1 38735801 38736031 -243457633 + MIR SINE MIR 2 259 -3 270 289 24 0 chr1 38736209 38736292 -243457372 + L2 LINE L2 2591 2675 -639 1229 209 234 0 chr1 38736591 38736912 -243456752 + MSTD LTR MaLR 1 396 0 407 297 31 8 chr1 38737178 38737306 -243456358 + MIR SINE MIR 51 181 -81 184 271 34 0 chr1 38737311 38737370 -243456294 - MIR3 SINE MIR -48 160 100 236 262 155 0 chr1 38737416 38737519 -243456145 - MER5A DNA MER1_type -6 183 65 222 171 0 0 chr1 38737653 38737694 -243455970 + L2 LINE L2 2717 2757 -557 241 245 29 78 chr1 38737769 38737871 -243455793 + L2 LINE L2 2916 3012 -260 186 358 12 12 chr1 38738204 38738285 -243455379 + MIR SINE MIR 57 137 -71 30 69 0 0 chr1 38739451 38739509 -243454155 + GC_rich Low_complexity Low_complexity 1 58 0 203 189 19 19 chr1 38739554 38739607 -243454057 + (CCGGG)n Simple_repeat Simple_repeat 5 57 0 180 125 0 0 chr1 38742298 38742330 -243451334 + (CGGGGG)n Simple_repeat Simple_repeat 3 34 0 2343 61 54 7 chr1 38742986 38743281 -243450383 - AluSp SINE Alu -4 309 1 246 243 14 14 chr1 38743381 38743455 -243450209 - MIR SINE MIR -176 86 13 219 228 185 54 chr1 38744320 38744412 -243449252 + MIR SINE MIR 17 120 -88 299 267 20 0 chr1 38744417 38744518 -243449146 + (TA)n Simple_repeat Simple_repeat 1 103 0 313 300 119 27 chr1 38744579 38744911 -243448753 + L2 LINE L2 2657 3038 -234 338 320 153 30 chr1 38745514 38745951 -243447713 - L2 LINE L2 -1096 2218 1728 1590 187 142 58 chr1 38746001 38746467 -243447197 + MLT1D LTR MaLR 1 505 0 416 317 56 7 chr1 38746539 38746681 -243446983 - MIR SINE MIR -10 252 104 435 241 337 0 chr1 38746878 38747044 -243446620 + MIR SINE MIR 2 223 -39 351 0 0 0 chr1 38747318 38747357 -243446307 + (TTGG)n Simple_repeat Simple_repeat 4 42 0 2214 226 20 24 chr1 38747366 38747871 -243445793 + MLT1J LTR MaLR 3 505 -6 792 125 132 7 chr1 38748828 38748980 -243444684 + MER53 DNA DNA 1 171 -18 785 320 41 68 chr1 38749283 38749652 -243444012 + L2 LINE L2 2914 3272 0 199 349 0 12 chr1 38750352 38750435 -243443229 + L2 LINE L2 2517 2598 -716 569 317 112 49 chr1 38750435 38750943 -243442721 + L1MEd LINE L1 20 559 -5560 323 250 160 37 chr1 38751285 38751491 -243442173 + L1M2 LINE L1 2644 2915 -4018 1976 123 7 7 chr1 38751527 38751836 -243441828 + AluSx SINE Alu 1 309 -3 685 283 68 11 chr1 38751836 38752203 -243441461 + L1M2 LINE L1 2935 3322 -3526 3021 101 90 62 chr1 38752229 38752297 -243441367 - MER1A DNA MER1_type -2173 527 462 2350 57 7 7 chr1 38752297 38752598 -243441066 + AluY SINE Alu 5 305 -6 3021 101 90 62 chr1 38752598 38753042 -243440622 - MER1A DNA MER1_type -2238 462 1 897 286 91 77 chr1 38753064 38753562 -243440102 + L1M2 LINE L1 3440 3930 -2918 1558 201 17 14 chr1 38753562 38753855 -243439809 - AluJo SINE Alu -8 294 1 897 286 91 77 chr1 38753855 38753953 -243439711 + L1M2 LINE L1 3930 4025 -2823 1575 100 166 8 chr1 38753953 38754212 -243439452 + AluSg1 SINE Alu 1 300 -9 897 286 91 77 chr1 38754212 38754433 -243439231 + L1M2 LINE L1 4025 4217 -2631 1530 171 14 38 chr1 38754870 38755163 -243438501 + AluJo SINE Alu 1 286 -26 381 226 0 0 chr1 38755165 38755311 -243438353 + (TA)n Simple_repeat Simple_repeat 1 146 0 315 273 181 51 chr1 38756263 38756479 -243437185 - MIR SINE MIR -8 254 11 299 313 125 9 chr1 38756887 38756999 -243436665 - L2 LINE L2 -5 3267 3143 392 343 34 14 chr1 38757237 38757383 -243436281 + L2 LINE L2 3165 3313 0 210 239 224 0 chr1 38757806 38757873 -243435791 + L3b LINE CR1 1361 1442 -141 245 286 29 0 chr1 38759091 38759161 -243434503 + MLT1L LTR MaLR 202 273 -342 939 302 121 29 chr1 38759450 38760088 -243433576 + L2 LINE L2 2594 3269 -3 449 314 5 78 chr1 38760109 38760313 -243433351 - MIR SINE MIR -54 208 20 798 231 44 35 chr1 38761119 38761348 -243432316 + MIR SINE MIR 28 258 -4 194 298 0 0 chr1 38761365 38761412 -243432252 + MIR SINE MIR 71 117 -91 981 229 121 39 chr1 38762517 38762880 -243430784 + L2 LINE L2 2921 3313 0 633 305 27 5 chr1 38763665 38763852 -243429812 + MIR SINE MIR 32 222 -40 425 309 29 0 chr1 38764268 38764404 -243429260 + MIR SINE MIR 68 207 -55 194 235 272 49 chr1 38765160 38765241 -243428423 + L2 LINE L2 3155 3253 -19 423 313 31 47 chr1 38765347 38765539 -243428125 + L3 LINE CR1 1375 1563 -14 863 219 55 5 chr1 38765554 38765755 -243427909 - MIR SINE MIR -19 243 33 1864 115 3 17 chr1 38765793 38766144 -243427520 - AluSc SINE Alu 0 347 1 1938 121 13 3 chr1 38766486 38766784 -243426880 - AluJb SINE Alu -4 308 8 198 118 0 0 chr1 38767267 38767301 -243426363 + (CAGA)n Simple_repeat Simple_repeat 1 34 0 227 337 48 0 chr1 38768560 38768643 -243425021 - L3b LINE CR1 -205 1378 1292 2081 102 0 3 chr1 38768645 38768950 -243424714 + AluSx SINE Alu 1 304 0 240 323 16 55 chr1 38769718 38769845 -243423819 + L2 LINE L2 2554 2675 -639 1021 283 170 41 chr1 38769869 38770473 -243423191 - L2 LINE L2 0 3313 2633 295 336 78 102 chr1 38770482 38770815 -243422849 + L2 LINE L2 2948 3272 0 182 91 30 0 chr1 38771668 38771701 -243421963 + (CA)n Simple_repeat Simple_repeat 1 34 0 410 321 12 6 chr1 38771732 38771897 -243421767 + (CATA)n Simple_repeat Simple_repeat 4 169 0 637 346 31 0 chr1 38772871 38773125 -243420539 + L2 LINE L2 2235 2496 -818 446 209 28 14 chr1 38773149 38773260 -243420404 + L1ME3A LINE L1 6035 6148 -16 29 47 0 0 chr1 38773292 38773335 -243420329 + AT_rich Low_complexity Low_complexity 1 43 0 1811 168 10 7 chr1 38774449 38774759 -243418905 + AluJb SINE Alu 1 311 -1 807 176 20 0 chr1 38774808 38774961 -243418703 - FAM SINE Alu -6 43 1 414 246 113 66 chr1 38775030 38775073 -243418591 + L1MEc LINE L1 1771 1810 -4405 1709 165 10 13 chr1 38775073 38775376 -243418288 + AluJb SINE Alu 1 302 -10 414 246 113 66 chr1 38775376 38775689 -243417975 + L1MEc LINE L1 1810 2109 -4106 10808 31 0 0 chr1 38775876 38777972 -243415692 + L1PA3 LINE L1 4095 6195 0 3085 35 3 11 chr1 38777974 38778349 -243415315 + L1PA5 LINE L1 5778 6149 -5 420 180 40 0 chr1 38778357 38778457 -243415207 + L1MEc LINE L1 2198 2301 -4095 1415 195 45 0 chr1 38778470 38778646 -243415018 - AluSx SINE Alu 0 312 117 184 0 62 31 chr1 38778646 38778678 -243414986 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1415 195 45 0 chr1 38778678 38778788 -243414876 - AluSx SINE Alu -195 117 13 1554 280 60 62 chr1 38779305 38779970 -243413694 + L1MEd LINE L1 26 689 -5430 2091 215 51 78 chr1 38779977 38780526 -243413138 + MLT1F1 LTR MaLR 1 559 -8 359 233 23 0 chr1 38780537 38780623 -243413041 + MLT1J1 LTR MaLR 355 442 -4 308 288 64 8 chr1 38780711 38780836 -243412828 + L1M4 LINE L1 78 209 -6333 293 183 302 6 chr1 38783217 38783386 -243410278 + MIR SINE MIR 41 259 -3 25 83 0 0 chr1 38783388 38783448 -243410216 + AT_rich Low_complexity Low_complexity 1 60 0 1285 171 89 52 chr1 38783617 38783944 -243409720 + MER58B DNA MER1_type 3 341 0 1993 110 14 10 chr1 38784038 38784328 -243409336 + AluSq SINE Alu 1 291 -22 25 65 0 0 chr1 38784529 38784575 -243409089 + AT_rich Low_complexity Low_complexity 1 46 0 390 315 50 57 chr1 38785192 38785838 -243407826 - Charlie3 DNA MER1_type -693 2017 1355 2145 282 73 46 chr1 38786280 38786642 -243407022 - L1MEc LINE L1 -4973 1423 1072 1997 121 3 0 chr1 38786642 38786948 -243406716 - AluSx SINE Alu 0 307 1 2145 282 73 46 chr1 38786948 38787338 -243406326 - L1MEc LINE L1 -5324 1072 694 1839 159 0 13 chr1 38787338 38787646 -243406018 - AluSx SINE Alu -8 304 1 2145 282 73 46 chr1 38787646 38788242 -243405422 - L1MEc LINE L1 -5702 694 36 2045 110 0 13 chr1 38788274 38788582 -243405082 + AluSg SINE Alu 1 304 -6 781 250 127 8 chr1 38788601 38788861 -243404803 + L1M4 LINE L1 4803 5093 -1053 1154 65 7 7 chr1 38788900 38789053 -243404611 - AluSp SINE Alu -159 154 2 550 265 53 30 chr1 38789054 38789318 -243404346 + L1M4 LINE L1 5079 5348 -798 25 0 0 0 chr1 38790673 38790698 -243402966 + GC_rich Low_complexity Low_complexity 1 25 0 273 57 0 0 chr1 38790739 38790774 -243402890 + (TCTCCC)n Simple_repeat Simple_repeat 6 40 0 221 56 0 28 chr1 38790789 38790825 -243402839 + (CGGGGG)n Simple_repeat Simple_repeat 6 40 0 22 0 0 0 chr1 38791005 38791027 -243402637 + GC_rich Low_complexity Low_complexity 1 22 0 217 216 0 0 chr1 38791138 38791189 -243402475 + C-rich Low_complexity Low_complexity 1 51 0 713 240 23 0 chr1 38791726 38791947 -243401717 + L1M4 LINE L1 4988 5213 -933 461 143 29 0 chr1 38791953 38792023 -243401641 + MLT1B LTR MaLR 264 335 -55 1890 125 0 7 chr1 38792073 38792354 -243401310 + AluSx SINE Alu 1 279 -33 288 0 0 0 chr1 38792354 38792386 -243401278 + (CA)n Simple_repeat Simple_repeat 1 32 0 435 301 49 39 chr1 38792455 38792658 -243401006 + L1MEc LINE L1 2033 2237 -4159 229 312 57 0 chr1 38792756 38792897 -243400767 + L1MEc LINE L1 2252 2400 -3815 3188 239 101 54 chr1 38793000 38794251 -243399413 - L2 LINE L2 -144 3169 1882 486 221 6 23 chr1 38794376 38794528 -243399136 - MIR SINE MIR 0 262 49 249 347 45 36 chr1 38794598 38794820 -243398844 - MIR SINE MIR -6 256 33 2142 79 75 0 chr1 38794856 38795136 -243398528 - AluY SINE Alu -10 301 1 473 317 62 46 chr1 38796448 38796836 -243396828 - L2 LINE L2 -557 2757 2364 210 143 39 26 chr1 38796973 38797050 -243396614 + G-rich Low_complexity Low_complexity 1 78 0 2297 98 0 0 chr1 38798917 38799204 -243394460 + AluSx SINE Alu 1 287 -25 21 36 0 0 chr1 38799287 38799315 -243394349 + AT_rich Low_complexity Low_complexity 1 28 0 720 253 118 13 chr1 38799344 38799811 -243393853 - L1M4 LINE L1 -1455 4691 4176 343 270 29 35 chr1 38799813 38799987 -243393677 + L1MEc LINE L1 2515 2687 -3528 2143 204 55 44 chr1 38800062 38800312 -243393352 - MLT1F LTR MaLR 0 514 268 2999 122 16 46 chr1 38800312 38800813 -243392851 - MER66B LTR ERV1 0 486 1 2143 204 55 44 chr1 38800813 38801094 -243392570 - MLT1F LTR MaLR -246 268 1 780 254 88 18 chr1 38801094 38801433 -243392231 + L1MEc LINE L1 2768 3130 -3085 659 277 72 49 chr1 38801504 38801736 -243391928 + L1MEc LINE L1 3048 3273 -2942 821 169 0 22 chr1 38801736 38801872 -243391792 - FLAM_C SINE Alu 0 133 1 2203 122 0 3 chr1 38801875 38802179 -243391485 - AluSx SINE Alu -9 303 1 659 277 72 49 chr1 38802179 38802411 -243391253 + L1MEc LINE L1 3274 3527 -2688 1952 134 137 31 chr1 38802432 38802819 -243390845 + MSTA LTR MaLR 1 428 0 216 0 0 0 chr1 38803051 38803075 -243390589 + (A)n Simple_repeat Simple_repeat 1 24 0 209 375 17 17 chr1 38803259 38803379 -243390285 - MIR SINE MIR -123 139 20 180 77 0 0 chr1 38804077 38804103 -243389561 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 7341 59 4 32 chr1 38804103 38805335 -243388329 - SVA Other Other -799 1363 323 25 65 0 0 chr1 38805344 38805390 -243388274 + AT_rich Low_complexity Low_complexity 1 46 0 1576 146 96 21 chr1 38805417 38805698 -243387966 - AluJb SINE Alu -10 302 1 401 276 33 33 chr1 38805707 38805983 -243387681 - L1MEc LINE L1 -4967 1649 1181 2004 101 17 47 chr1 38806021 38806319 -243387345 + AluSx SINE Alu 1 289 -23 486 0 0 0 chr1 38806320 38806374 -243387290 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 333 197 128 34 chr1 38806763 38806880 -243386784 - L1M4 LINE L1 -1284 4862 4735 1138 251 362 18 chr1 38806936 38807336 -243386328 - L2 LINE L2 -563 2751 2490 1428 181 75 4 chr1 38807336 38807601 -243386063 + AluJo SINE Alu 1 284 -28 1138 251 362 18 chr1 38807601 38808028 -243385636 - L2 LINE L2 -824 2490 1639 529 239 154 72 chr1 38808031 38808422 -243385242 + L1ME2 LINE L1 5256 5614 -550 1780 142 25 25 chr1 38808422 38808724 -243384940 - AluJb SINE Alu 0 302 1 1958 148 20 3 chr1 38808731 38809029 -243384635 - AluJo SINE Alu -4 308 6 529 239 154 72 chr1 38809029 38809197 -243384467 + L1ME2 LINE L1 5619 5870 -294 1175 215 5 9 chr1 38809410 38809629 -243384035 + MER58A DNA MER1_type 1 218 -6 25 31 0 0 chr1 38810149 38810181 -243383483 + AT_rich Low_complexity Low_complexity 1 32 0 1810 147 6 35 chr1 38811384 38811698 -243381966 + AluJo SINE Alu 1 305 -7 260 322 16 16 chr1 38812604 38812725 -243380939 + MER5A DNA MER1_type 1 121 -68 1906 114 54 17 chr1 38812839 38813136 -243380528 + AluSg SINE Alu 1 308 -2 2525 210 40 39 chr1 38813376 38813604 -243380060 + Zaphod DNA AcHobo 2695 2921 -1110 2215 153 60 14 chr1 38813604 38814017 -243379647 + MSTB1 LTR MaLR 1 432 0 2525 210 40 39 chr1 38814017 38814536 -243379128 + Zaphod DNA AcHobo 2921 3443 -588 1074 194 9 18 chr1 38814520 38814742 -243378922 + Zaphod DNA AcHobo 3785 4004 -27 * 598 248 175 43 chr1 38816572 38816635 -243377029 + L1MC4 LINE L1 5482 5535 -586 2095 109 22 29 chr1 38816635 38816946 -243376718 - AluSg1 SINE Alu 0 309 1 598 248 175 43 chr1 38816946 38817250 -243376414 + L1MC4 LINE L1 5535 5775 -346 1329 125 82 0 chr1 38817379 38817587 -243376077 - AluJb SINE Alu -4 308 84 297 282 0 0 chr1 38818304 38818375 -243375289 - L2 LINE L2 -23 3249 3179 303 28 0 0 chr1 38818576 38818612 -243375052 + (TG)n Simple_repeat Simple_repeat 2 37 0 339 265 166 11 chr1 38818699 38818880 -243374784 - L2 LINE L2 -343 2971 2763 229 355 21 0 chr1 38820266 38820359 -243373305 - L2 LINE L2 -821 2493 2399 1033 95 68 16 chr1 38820571 38820761 -243372903 + Tigger7 DNA MER2_type 2208 2407 -80 272 253 35 0 chr1 38820762 38820849 -243372815 + (TA)n Simple_repeat Simple_repeat 1 90 0 207 100 0 0 chr1 38820911 38820941 -243372723 + (TA)n Simple_repeat Simple_repeat 1 30 0 239 197 0 30 chr1 38820978 38821044 -243372620 + L1MC4 LINE L1 6640 6703 -1339 601 179 24 6 chr1 38821059 38821227 -243372437 + (TA)n Simple_repeat Simple_repeat 2 172 0 590 197 0 41 chr1 38821227 38821349 -243372315 + Tigger7 DNA MER2_type 2471 2587 0 245 98 24 0 chr1 38821418 38821459 -243372205 + MADE1 DNA Mariner 35 76 -4 22 0 0 0 chr1 38821511 38821533 -243372131 + AT_rich Low_complexity Low_complexity 1 22 0 1083 288 105 16 chr1 38821533 38822064 -243371600 + L2 LINE L2 2741 3309 -4 2434 78 0 7 chr1 38822178 38822474 -243371190 + AluY SINE Alu 1 294 -17 768 147 0 98 chr1 38822499 38822662 -243371002 + MLT1E2 LTR MaLR 1 147 -479 360 239 126 52 chr1 38822663 38822752 -243370912 - L1M4 LINE L1 -982 5164 5083 2418 97 0 3 chr1 38822752 38823062 -243370602 + AluSg SINE Alu 1 309 -1 360 239 126 52 chr1 38823062 38823202 -243370462 - L1M4 LINE L1 -1063 5083 4918 458 198 11 33 chr1 38823254 38823498 -243370166 + (TA)n Simple_repeat Simple_repeat 1 238 0 24 32 0 0 chr1 38823501 38823532 -243370132 + AT_rich Low_complexity Low_complexity 1 31 0 263 167 0 0 chr1 38823826 38823868 -243369796 - MIR SINE MIR 0 262 221 499 178 50 20 chr1 38823964 38824065 -243369599 + MLT1L LTR MaLR 132 235 -380 3005 6 0 0 chr1 38824083 38824400 -243369264 - AluYb8 SINE Alu -1 317 1 548 274 121 21 chr1 38824458 38824648 -243369016 + MLT1L LTR MaLR 349 557 -58 804 246 169 38 chr1 38825338 38825765 -243367899 + L1ME4a LINE L1 5582 6064 -57 1757 159 0 10 chr1 38826015 38826305 -243367359 + AluJb SINE Alu 24 310 -2 2021 115 3 39 chr1 38826357 38826662 -243367002 - AluSx SINE Alu -18 294 1 813 192 0 0 chr1 38829446 38829576 -243364088 + MER45A DNA AcHobo 1 130 -48 2431 83 0 13 chr1 38829628 38829941 -243363723 + AluY SINE Alu 1 309 -2 30 27 0 0 chr1 38830076 38830113 -243363551 + AT_rich Low_complexity Low_complexity 1 37 0 1480 194 32 157 chr1 38830277 38830908 -243362756 + MLT1H LTR MaLR 1 542 0 612 308 92 61 chr1 38830964 38831409 -243362255 + L1MEd LINE L1 520 978 -5394 2565 161 17 14 chr1 38831431 38831853 -243361811 + MLT2B2 LTR ERVL 1 423 -92 686 98 0 0 chr1 38831953 38832045 -243361619 - L1PA14 LINE L1 -35 6126 6035 725 167 8 0 chr1 38832052 38832172 -243361492 - AluJb SINE Alu -186 126 6 300 255 90 21 chr1 38832201 38832346 -243361318 + L1MEd LINE L1 1202 1356 -5028 552 214 36 71 chr1 38832346 38832514 -243361150 + MSTD LTR MaLR 1 162 -234 2205 78 21 0 chr1 38832514 38832797 -243360867 - AluSg SINE Alu -21 289 1 768 158 0 43 chr1 38833128 38833267 -243360397 + FLAM_C SINE Alu 1 133 0 269 298 149 0 chr1 38834083 38834224 -243359440 + MIR SINE MIR 20 181 -81 2325 79 14 0 chr1 38834253 38834544 -243359120 + AluSq SINE Alu 1 295 -18 806 169 0 0 chr1 38834993 38835123 -243358541 + FLAM_A SINE Alu 4 133 0 1921 163 0 7 chr1 38835489 38835783 -243357881 - AluSx SINE Alu -20 292 1 22 35 0 0 chr1 38836334 38836363 -243357301 + AT_rich Low_complexity Low_complexity 1 29 0 2264 99 3 23 chr1 38836777 38837081 -243356583 + AluSg SINE Alu 1 298 -12 777 168 19 71 chr1 38837135 38837290 -243356374 + AluSg/x SINE Alu 133 279 -31 654 261 48 64 chr1 38837850 38837925 -243355739 - MIR SINE MIR -16 246 171 1542 129 15 117 chr1 38837925 38838250 -243355414 + AluJo SINE Alu 5 296 -6 654 261 48 64 chr1 38838250 38838423 -243355241 - MIR SINE MIR -91 171 2 22 35 0 0 chr1 38838882 38838911 -243354753 + AT_rich Low_complexity Low_complexity 1 29 0 317 191 0 0 chr1 38839060 38839123 -243354541 + MARNA DNA Mariner 480 542 -44 1518 171 47 8 chr1 38839294 38839552 -243354112 + AluJo SINE Alu 1 268 -44 32 26 0 0 chr1 38839716 38839755 -243353909 + AT_rich Low_complexity Low_complexity 1 39 0 322 244 228 22 chr1 38839778 38839958 -243353706 - MIR SINE MIR 0 262 46 1706 172 28 10 chr1 38840855 38841146 -243352518 - AluJo SINE Alu -16 296 1 282 244 12 12 chr1 38841215 38841297 -243352367 + MER112 DNA MER1_type 1 82 -178 278 263 0 12 chr1 38841327 38841407 -243352257 + MER112 DNA MER1_type 83 161 -99 2343 113 0 0 chr1 38841745 38842047 -243351617 - AluSg SINE Alu -8 302 1 296 111 0 0 chr1 38842295 38842340 -243351324 - AluSx SINE Alu -5 296 252 2037 111 4 14 chr1 38842340 38842619 -243351045 - AluSx SINE Alu -35 277 2 1247 125 0 0 chr1 38842649 38842825 -243350839 + AluSg/x SINE Alu 135 310 0 394 220 10 0 chr1 38843335 38843435 -243350229 - MIR SINE MIR -114 148 48 2292 95 24 0 chr1 38843442 38843738 -243349926 - AluSx SINE Alu -9 303 1 940 209 51 9 chr1 39043812 39044027 -243149637 - L1MEc LINE L1 -6141 255 32 365 257 9 106 chr1 39044064 39044150 -243149514 + MER58 DNA MER1_type 1 75 -140 1686 158 10 35 chr1 39044150 39044324 -243149340 - AluJb SINE Alu -9 303 139 2460 85 0 0 chr1 39044324 39044630 -243149034 - AluY SINE Alu -5 306 1 1686 158 10 35 chr1 39044630 39044766 -243148898 - AluJb SINE Alu -173 139 1 365 257 9 106 chr1 39044766 39044792 -243148872 + MER58 DNA MER1_type 75 102 -113 792 167 8 15 chr1 39044804 39044936 -243148728 + FLAM_C SINE Alu 2 132 -1 1513 181 16 56 chr1 39044943 39045264 -243148400 + AluJb SINE Alu 5 312 0 237 221 35 23 chr1 39045264 39045350 -243148314 - L1MEc LINE L1 -2786 3429 3343 1440 135 47 0 chr1 39045350 39045593 -243148071 - AluSx SINE Alu 0 312 60 1535 208 70 89 chr1 39045621 39045973 -243147691 - L1MEc LINE L1 -2923 3292 2935 2199 108 0 3 chr1 39045973 39046270 -243147394 - AluSg SINE Alu -14 296 1 1535 208 70 89 chr1 39046270 39046397 -243147267 - L1MEc LINE L1 -3280 2935 2807 1647 170 3 38 chr1 39046397 39046715 -243146949 - AluJb SINE Alu -5 307 1 1535 208 70 89 chr1 39046715 39046792 -243146872 - L1MEc LINE L1 -3408 2807 2730 2131 124 0 0 chr1 39046792 39047090 -243146574 - AluSc SINE Alu -11 298 1 1535 208 70 89 chr1 39047090 39047348 -243146316 - L1MEc LINE L1 -3485 2730 2492 369 161 97 0 chr1 39047404 39047466 -243146198 - AluS SINE Alu -234 69 2 1743 167 3 17 chr1 39047489 39047789 -243145875 - AluJo SINE Alu -10 302 7 354 248 180 53 chr1 39047806 39048070 -243145594 - L1MEc LINE L1 -3783 2432 2178 306 226 173 42 chr1 39048087 39048255 -243145409 - L1MEc LINE L1 -4266 2130 1941 755 230 26 49 chr1 39048305 39048531 -243145133 - L1MC4 LINE L1 -959 7083 6863 198 330 11 43 chr1 39048540 39048634 -243145030 + L2 LINE L2 2716 2806 -508 244 283 7 101 chr1 39048997 39049135 -243144529 + MIR3 SINE MIR 69 193 -15 25 31 0 0 chr1 39049420 39049452 -243144212 + AT_rich Low_complexity Low_complexity 1 32 0 2545 47 0 7 chr1 39049452 39049780 -243143884 - AluY SINE Alu 0 311 1 1185 90 0 6 chr1 39049787 39049943 -243143721 - AluSg/x SINE Alu -24 288 134 2117 125 7 7 chr1 39049943 39050238 -243143426 - AluSx SINE Alu -17 295 1 188 241 74 0 chr1 39050398 39050452 -243143212 - MIR SINE MIR -111 97 40 1986 129 3 7 chr1 39050527 39050822 -243142842 + AluJb SINE Alu 4 297 -15 27 0 0 0 chr1 39051108 39051135 -243142529 + AT_rich Low_complexity Low_complexity 1 27 0 2236 121 3 0 chr1 39051345 39051652 -243142012 - AluSq SINE Alu -5 308 1 524 228 0 7 chr1 39051887 39052023 -243141641 + CT-rich Low_complexity Low_complexity 1 135 0 529 164 41 75 chr1 39052024 39052170 -243141494 - FAM SINE Alu -3 46 1 1646 175 34 10 chr1 39052270 39052562 -243141102 + AluJo SINE Alu 1 299 -13 2281 86 0 21 chr1 39052821 39053159 -243140505 - AluSq SINE Alu 0 332 1 3059 274 114 23 chr1 39053227 39054460 -243139204 + L2 LINE L2 1688 3035 -278 889 186 0 53 chr1 39054460 39054608 -243139056 + FRAM SINE Alu 1 136 -176 2395 95 3 0 chr1 39054608 39054913 -243138751 - AluSx SINE Alu -6 306 1 889 186 0 53 chr1 39054913 39054952 -243138712 + FRAM SINE Alu 136 176 0 217 268 144 31 chr1 39054952 39055049 -243138615 + L2 LINE L2 3027 3134 -179 481 173 12 0 chr1 39055522 39055603 -243138061 + MER69A DNA AcHobo 42 123 -54 180 0 0 0 chr1 39056268 39056288 -243137376 + (T)n Simple_repeat Simple_repeat 1 20 0 2287 74 3 0 chr1 39056380 39056689 -243136975 + AluY SINE Alu 1 310 0 380 206 254 0 chr1 39056698 39056824 -243136840 - MIR SINE MIR -27 235 78 214 287 138 21 chr1 39056913 39057007 -243136657 + MIR SINE MIR 38 142 -66 383 344 41 0 chr1 39057187 39057309 -243136355 + MIR3 SINE MIR 33 159 -49 261 366 87 25 chr1 39058291 39058452 -243135212 + MIR3 SINE MIR 24 194 -14 36 0 0 0 chr1 39059402 39059438 -243134226 + GC_rich Low_complexity Low_complexity 1 36 0 521 242 134 18 chr1 39060371 39060559 -243133105 - MIR SINE MIR -18 244 38 2035 76 0 82 chr1 39060777 39061093 -243132571 + AluSx SINE Alu 7 296 -16 341 50 0 0 chr1 39061619 39061659 -243132005 - LTR57-int LTR ERVL -3256 2087 2048 2182 115 0 0 chr1 39061710 39061997 -243131667 - AluSx SINE Alu -25 287 1 820 183 33 0 chr1 39062116 39062269 -243131395 + FRAM SINE Alu 4 161 -5 2402 66 0 20 chr1 39063000 39063305 -243130359 - AluY SINE Alu -12 299 1 189 121 0 0 chr1 39063559 39063592 -243130072 + (CA)n Simple_repeat Simple_repeat 1 33 0 29 0 0 0 chr1 39064316 39064345 -243129319 + AT_rich Low_complexity Low_complexity 1 29 0 1515 154 39 77 chr1 39064614 39064925 -243128739 + AluJo SINE Alu 1 299 -13 323 198 257 0 chr1 39065043 39065144 -243128520 - MIR SINE MIR -30 232 106 2217 102 44 0 chr1 39065524 39065817 -243127847 - AluSg SINE Alu -4 306 1 273 222 28 28 chr1 39066036 39066108 -243127556 + MER116 DNA Mariner 6 77 -3 404 145 0 13 chr1 39066533 39066609 -243127055 + (TCCC)n Simple_repeat Simple_repeat 2 76 0 1024 212 72 107 chr1 39066627 39066898 -243126766 - L1MC5 LINE L1 -182 7779 7500 2044 138 3 0 chr1 39066898 39067195 -243126469 - AluSq SINE Alu -15 298 1 1024 212 72 107 chr1 39067195 39067383 -243126281 - L1MC5 LINE L1 -461 7500 7337 689 278 12 6 chr1 39067383 39067556 -243126108 + MER5B DNA MER1_type 1 174 -4 1024 212 72 107 chr1 39067556 39067610 -243126054 - L1MC5 LINE L1 -624 7337 7283 420 258 47 8 chr1 39067614 39067742 -243125922 + MER94 DNA DNA 2 134 0 902 215 72 69 chr1 39067886 39068221 -243125443 - L1MC5 LINE L1 -744 7217 6882 788 211 177 34 chr1 39068240 39068600 -243125064 - MLT1C LTR MaLR -3 464 11 1841 147 22 136 chr1 39068623 39068715 -243124949 - MLT1C-int LTR MaLR -14 1357 1256 2125 116 14 0 chr1 39068715 39069009 -243124655 - AluY SINE Alu -13 298 1 1841 147 22 136 chr1 39069009 39069373 -243124291 - MLT1C-int LTR MaLR -115 1256 953 3531 198 43 41 chr1 39069543 39070373 -243123291 - MLT1C-int LTR MaLR -496 875 44 771 118 0 27 chr1 39070814 39070924 -243122740 + FRAM SINE Alu 58 164 -12 2253 84 3 29 chr1 39071041 39071351 -243122313 - AluSq SINE Alu -7 306 5 24 0 0 0 chr1 39071546 39071570 -243122094 + AT_rich Low_complexity Low_complexity 1 24 0 2239 126 3 0 chr1 39071695 39071997 -243121667 - AluSq SINE Alu -10 303 1 519 262 45 82 chr1 39072037 39072257 -243121407 - L1ME1 LINE L1 -31 6135 5925 2298 106 0 7 chr1 39072257 39072560 -243121104 + AluSq SINE Alu 1 301 -12 519 262 45 82 chr1 39072560 39072606 -243121058 - L1ME1 LINE L1 -241 5925 5879 451 183 0 0 chr1 39072663 39072734 -243120930 + AluJ/FRAM SINE Alu 222 292 -20 354 315 112 52 chr1 39072775 39073007 -243120657 - L1MEc LINE L1 -4437 2284 2039 989 178 18 0 chr1 39073007 39073170 -243120494 - FRAM SINE Alu 0 166 1 1017 189 88 47 chr1 39073178 39073496 -243120168 - L1MEc LINE L1 -4707 1833 1503 825 114 8 0 chr1 39073498 39073621 -243120043 - L1MB4 LINE L1 -3 6177 6054 403 71 12 47 chr1 39073745 39073830 -243119834 + (TTTC)n Simple_repeat Simple_repeat 1 82 0 1874 129 17 37 chr1 39073852 39074004 -243119660 - AluSx SINE Alu -24 288 143 2200 123 0 0 chr1 39074004 39074313 -243119351 - AluSx SINE Alu -3 309 1 1874 129 17 37 chr1 39074313 39074454 -243119210 - AluSx SINE Alu -169 143 1 2073 139 3 3 chr1 39074498 39074808 -243118856 - AluSx SINE Alu -2 310 1 34 42 0 0 chr1 39074897 39074945 -243118719 + AT_rich Low_complexity Low_complexity 1 48 0 1135 119 6 0 chr1 39074965 39075124 -243118540 + MER101 LTR ERV1 1 160 -314 2456 68 0 0 chr1 39075412 39075704 -243117960 - AluSx SINE Alu -20 292 1 1625 145 22 14 chr1 39075942 39076218 -243117446 + AluSx SINE Alu 35 312 0 1364 188 43 18 chr1 39076829 39077105 -243116559 + AluJo SINE Alu 14 296 -16 21 57 0 0 chr1 39077105 39077140 -243116524 + AT_rich Low_complexity Low_complexity 1 35 0 288 305 30 69 chr1 39077281 39077412 -243116252 - MIR3 SINE MIR -28 180 55 2878 184 17 9 chr1 39077487 39078014 -243115650 + Tigger6b DNA MER2_type 6 536 -1061 2357 83 0 0 chr1 39078015 39078303 -243115361 + AluSq SINE Alu 11 298 -15 2159 101 3 3 chr1 39078316 39078604 -243115060 + AluSq SINE Alu 1 288 -25 225 94 0 0 chr1 39078604 39078636 -243115028 + (TAGA)n Simple_repeat Simple_repeat 4 35 0 3784 188 44 48 chr1 39078672 39079220 -243114444 + Tigger6b DNA MER2_type 671 1219 -378 2350 102 3 0 chr1 39079220 39079523 -243114141 - AluSx SINE Alu -8 304 1 3784 188 44 48 chr1 39079523 39079615 -243114049 + Tigger6b DNA MER2_type 1219 1310 -287 2237 120 0 7 chr1 39079615 39079923 -243113741 - AluSx SINE Alu -6 306 1 3784 188 44 48 chr1 39079923 39080052 -243113612 + Tigger6b DNA MER2_type 1310 1438 -159 2174 96 24 0 chr1 39080052 39080345 -243113319 - AluSp SINE Alu -13 300 1 3784 188 44 48 chr1 39080345 39080476 -243113188 + Tigger6b DNA MER2_type 1438 1570 -27 1840 147 14 7 chr1 39080508 39080794 -243112870 + AluJo SINE Alu 2 289 -23 3011 200 42 22 chr1 39081217 39082015 -243111649 + MER21B LTR ERV1 1 862 -1 207 0 0 0 chr1 39082754 39082777 -243110887 + (TG)n Simple_repeat Simple_repeat 2 24 0 509 237 9 9 chr1 39082784 39082898 -243110766 + MIR SINE MIR 103 216 -46 254 278 0 0 chr1 39082908 39082962 -243110702 + AluSg/x SINE Alu 133 186 -116 38 0 0 0 chr1 39082970 39083008 -243110656 + AT_rich Low_complexity Low_complexity 1 38 0 464 269 197 22 chr1 39083021 39083244 -243110420 + L1MC4a LINE L1 5614 5875 -1933 878 226 69 42 chr1 39083701 39083846 -243109818 - L2 LINE L2 -1372 1942 1802 2293 104 0 7 chr1 39083846 39084154 -243109510 - AluSg SINE Alu -4 306 1 2284 109 0 6 chr1 39084154 39084466 -243109198 - AluSx SINE Alu -1 311 1 878 226 69 42 chr1 39084466 39084580 -243109084 - L2 LINE L2 -1511 1803 1675 2375 74 0 46 chr1 39084692 39085018 -243108646 - AluY SINE Alu 0 311 1 228 237 26 70 chr1 39085248 39085362 -243108302 - HAL1 LINE L1 -1130 1377 1269 932 95 0 0 chr1 39085445 39085561 -243108103 - AluSc SINE Alu -193 116 1 689 259 104 48 chr1 39086927 39087243 -243106421 - L1ME4a LINE L1 -2 6119 5765 5522 146 30 9 chr1 39087243 39088022 -243105642 - MER6 DNA MER2_type -1 864 65 2108 130 0 3 chr1 39088022 39088323 -243105341 - AluSx SINE Alu -10 302 3 5522 146 30 9 chr1 39088323 39088390 -243105274 - MER6 DNA MER2_type -800 65 1 689 259 104 48 chr1 39088390 39088555 -243105109 - L1ME4a LINE L1 -356 5765 5611 314 246 0 15 chr1 39089019 39089084 -243104580 - MLT1K LTR MaLR -339 249 186 1627 170 16 53 chr1 39089437 39089760 -243103904 - AluJo SINE Alu -1 311 1 677 212 0 23 chr1 39090886 39091018 -243102646 - FLAM_C SINE Alu -4 129 1 21 57 0 0 chr1 39091019 39091054 -243102610 + AT_rich Low_complexity Low_complexity 1 35 0 1788 179 10 0 chr1 39091098 39091388 -243102276 + AluJo SINE Alu 1 293 -19 263 161 0 32 chr1 39091388 39091450 -243102214 + GA-rich Low_complexity Low_complexity 1 60 0 386 271 164 51 chr1 39091450 39091842 -243101822 - MLT1J LTR MaLR -69 442 1 1957 135 0 14 chr1 39092668 39093003 -243100661 + AluSx SINE Alu 1 331 0 23 54 0 0 chr1 39093239 39093276 -243100388 + AT_rich Low_complexity Low_complexity 1 37 0 1271 265 69 33 chr1 39093468 39093860 -243099804 - MLT1G LTR MaLR -16 574 169 999 217 10 10 chr1 39093871 39094078 -243099586 - AluJo SINE Alu -22 290 84 702 205 142 32 chr1 39094078 39094268 -243099396 - MLT1G LTR MaLR -380 215 5 1958 146 7 7 chr1 39094421 39094722 -243098942 - AluSx SINE Alu -11 301 1 1833 148 0 11 chr1 39095220 39095497 -243098167 + AluJo SINE Alu 23 296 -16 320 273 98 31 chr1 39095513 39095707 -243097957 - L1MC/D LINE L1 -2262 5546 5340 361 258 56 84 chr1 39096326 39096404 -243097260 - L1ME3A LINE L1 -220 5950 5871 2007 127 3 17 chr1 39096404 39096703 -243096961 - AluSg SINE Alu -15 295 1 361 258 56 84 chr1 39096703 39096802 -243096862 - L1ME3A LINE L1 -299 5871 5778 1160 138 30 35 chr1 39096804 39096835 -243096829 - L1MB2 LINE L1 -2 6169 6139 2051 78 89 4 chr1 39096835 39097116 -243096548 + AluY SINE Alu 1 305 -6 1160 138 30 35 chr1 39097116 39097315 -243096349 - L1MB2 LINE L1 -32 6139 5940 248 193 0 18 chr1 39097418 39097475 -243096189 - L1MB2 LINE L1 -339 5844 5789 287 90 13 128 chr1 39097527 39097554 -243096110 - L1M3 LINE L1 -334 5849 5820 2009 121 0 57 chr1 39097554 39097869 -243095795 - AluSq SINE Alu -16 297 1 287 90 13 128 chr1 39097869 39097919 -243095745 - L1M3 LINE L1 -363 5820 5781 1440 144 60 75 chr1 39097920 39098239 -243095425 + THE1C LTR MaLR 1 314 -61 1971 136 3 14 chr1 39098241 39098527 -243095137 + AluSx SINE Alu 1 283 -29 1405 190 50 53 chr1 39098705 39098827 -243094837 - MER58B DNA MER1_type -2079 341 220 2149 114 20 0 chr1 39098827 39099124 -243094540 + AluSx SINE Alu 1 303 -9 1405 190 50 53 chr1 39099124 39099343 -243094321 - MER58B DNA MER1_type -2200 220 1 433 136 0 0 chr1 39099435 39099494 -243094170 - MER8 DNA MER2_type 0 239 181 237 176 235 0 chr1 39099513 39099564 -243094100 - MER2 DNA MER2_type 0 345 283 * 723 195 27 76 chr1 39099542 39099727 -243093937 - MER8 DNA MER2_type -62 177 2 654 282 85 45 chr1 39099728 39100222 -243093442 - L1MB2 LINE L1 -607 5563 5090 1966 150 0 42 chr1 39100222 39100402 -243093262 - MER2 DNA MER2_type 0 344 185 2132 113 0 0 chr1 39100402 39100686 -243092978 - AluSq SINE Alu -16 297 14 1966 150 0 42 chr1 39100686 39100864 -243092800 - MER2 DNA MER2_type -159 185 1 654 282 85 45 chr1 39100864 39101448 -243092216 - L1MB2 LINE L1 -1080 5090 4447 3262 129 0 69 chr1 39101449 39102014 -243091650 - MER1A DNA MER1_type -1 526 1 428 296 166 24 chr1 39102043 39102290 -243091374 - L1M4 LINE L1 -1120 5026 4745 23 0 0 0 chr1 39102666 39102689 -243090975 + AT_rich Low_complexity Low_complexity 1 23 0 526 251 18 27 chr1 39103108 39103327 -243090337 - L1M4 LINE L1 -2540 3606 3390 1423 160 25 25 chr1 39103327 39103602 -243090062 - AluJo SINE Alu -14 298 24 1471 206 111 85 chr1 39103637 39103833 -243089831 - L1ME LINE L1 -679 5483 5294 1633 152 0 40 chr1 39103833 39104131 -243089533 - AluJb SINE Alu 0 302 16 1471 206 111 85 chr1 39104131 39104264 -243089400 - L1ME LINE L1 -868 5294 5166 204 97 0 0 chr1 39104264 39104295 -243089369 + (TCCA)n Simple_repeat Simple_repeat 3 33 0 1471 206 111 85 chr1 39104295 39104747 -243088917 - L1ME LINE L1 -996 5166 4672 2329 86 3 0 chr1 39104747 39105048 -243088616 + AluSx SINE Alu 1 302 -10 1471 206 111 85 chr1 39105048 39105214 -243088450 - L1ME LINE L1 -1490 4672 4512 2156 122 7 0 chr1 39105214 39105518 -243088146 - AluSx SINE Alu -6 306 1 1536 254 52 31 chr1 39105518 39106191 -243087473 - L1ME LINE L1 -2010 4136 3394 440 198 83 25 chr1 39106205 39106326 -243087338 + MER3 DNA MER1_type 22 149 -60 269 108 0 0 chr1 39106326 39106363 -243087301 + U2 snRNA snRNA 1 37 -151 234 200 33 17 chr1 39106362 39106422 -243087242 + MER3 DNA MER1_type 148 208 -1 * 329 216 57 0 chr1 39106512 39106600 -243087064 - L1ME LINE L1 -2784 3362 3270 1614 172 28 7 chr1 39106621 39106911 -243086753 - AluSq SINE Alu -17 296 1 2240 170 40 7 chr1 39106946 39107399 -243086265 - L1MB2 LINE L1 -4 6167 5700 2217 131 0 0 chr1 39107538 39107844 -243085820 + AluSx SINE Alu 6 311 -1 562 235 71 18 chr1 39107975 39108145 -243085519 - MER58C DNA MER1_type -5 210 32 2236 89 0 7 chr1 39108176 39108469 -243085195 - AluSq SINE Alu -22 291 1 1979 136 27 0 chr1 39110149 39110450 -243083214 - AluSx SINE Alu -3 309 1 2255 109 0 7 chr1 39110708 39111011 -243082653 + AluSx SINE Alu 1 301 -11 36 53 0 0 chr1 39111086 39111143 -243082521 + AT_rich Low_complexity Low_complexity 1 57 0 1557 146 4 8 chr1 39111143 39111383 -243082281 - AluJo SINE Alu -25 287 49 2199 106 7 0 chr1 39111461 39111753 -243081911 - AluSx SINE Alu -18 294 1 889 175 26 7 chr1 39113283 39113437 -243080227 + AluJo SINE Alu 1 157 -155 198 0 0 0 chr1 39113438 39113460 -243080204 + (CA)n Simple_repeat Simple_repeat 1 22 0 324 200 0 3 chr1 39113462 39113536 -243080128 + AluJo SINE Alu 82 138 -164 342 0 0 0 chr1 39113537 39113575 -243080089 + (CA)n Simple_repeat Simple_repeat 1 38 0 2029 274 89 54 chr1 39113779 39114755 -243078909 + L2 LINE L2 1927 2936 -378 1799 172 19 13 chr1 39115034 39115342 -243078322 + AluJb SINE Alu 1 310 -2 648 296 103 21 chr1 39115397 39115611 -243078053 - L1MC4a LINE L1 -1926 5882 5630 2392 96 0 3 chr1 39115611 39115924 -243077740 + AluSx SINE Alu 1 312 0 648 296 103 21 chr1 39115924 39116040 -243077624 - L1MC4a LINE L1 -2178 5630 5525 476 145 0 13 chr1 39116043 39116119 -243077545 - MER58A DNA MER1_type 0 224 150 2242 84 6 43 chr1 39116201 39116523 -243077141 - AluY SINE Alu -1 310 1 1624 170 67 0 chr1 39117122 39117392 -243076272 + AluSx SINE Alu 1 288 -24 302 279 54 48 chr1 39117610 39117757 -243075907 - L1MC4 LINE L1 -803 7239 7092 418 342 0 9 chr1 39117825 39117939 -243075725 + L2 LINE L2 3160 3272 0 193 324 14 14 chr1 39117950 39118021 -243075643 - L2 LINE L2 -557 2757 2687 1681 158 10 48 chr1 39118073 39118364 -243075300 - AluJo SINE Alu -30 282 3 231 227 187 0 chr1 39118389 39118464 -243075200 - MLT1K LTR MaLR 0 588 500 192 323 48 0 chr1 39119552 39119614 -243074050 + MIR3 SINE MIR 8 72 -136 254 323 126 36 chr1 39119631 39119854 -243073810 - MIR SINE MIR 0 262 20 36 23 0 0 chr1 39121004 39121047 -243072617 + AT_rich Low_complexity Low_complexity 1 43 0 228 387 99 7 chr1 39121411 39121553 -243072111 + L2 LINE L2 3102 3256 -16 27 0 0 0 chr1 39122112 39122139 -243071525 + AT_rich Low_complexity Low_complexity 1 27 0 1597 157 42 54 chr1 39123867 39124065 -243069599 - AluJb SINE Alu -1 311 117 1809 139 7 4 chr1 39124065 39124339 -243069325 + AluSx SINE Alu 1 275 -37 1597 157 42 54 chr1 39124339 39124453 -243069211 - AluJb SINE Alu -195 117 3 865 175 19 25 chr1 39124485 39124645 -243069019 - MER20 DNA MER1_type 0 219 61 248 348 37 43 chr1 39126238 39126402 -243067262 - MIR SINE MIR -42 220 58 216 0 0 0 chr1 39126415 39126439 -243067225 + (T)n Simple_repeat Simple_repeat 1 24 0 2052 122 0 39 chr1 39127905 39128217 -243065447 + AluSq SINE Alu 1 300 -13 2055 118 0 36 chr1 39128396 39128702 -243064962 - AluSq SINE Alu -18 295 1 2006 115 39 0 chr1 39128872 39129151 -243064513 + AluSx SINE Alu 5 294 -18 1043 163 8 119 chr1 39129195 39129447 -243064217 + MER58A DNA MER1_type 1 224 0 440 275 59 45 chr1 39129741 39129963 -243063701 + L1ME4a LINE L1 5523 5747 -374 1143 152 33 5 chr1 39130000 39130210 -243063454 - MER96B DNA MER1_type? -201 216 1 416 258 139 24 chr1 39130614 39130901 -243062763 + L1ME4a LINE L1 5791 6110 -11 31 58 0 0 chr1 39130911 39130963 -243062701 + AT_rich Low_complexity Low_complexity 1 52 0 207 196 0 0 chr1 39131148 39131194 -243062470 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 297 89 0 0 chr1 39131498 39131543 -243062121 + (T)n Simple_repeat Simple_repeat 1 45 0 198 0 0 0 chr1 39131903 39131925 -243061739 + (T)n Simple_repeat Simple_repeat 1 22 0 405 0 0 0 chr1 39132238 39132283 -243061381 + (TG)n Simple_repeat Simple_repeat 1 45 0 2280 71 0 3 chr1 39132286 39132589 -243061075 - AluY SINE Alu 0 302 1 497 319 57 27 chr1 39133159 39133494 -243060170 - MARNA DNA Mariner -156 430 86 811 157 108 3 chr1 39133545 39133773 -243059891 + L1MA8 LINE L1 5989 6223 -68 1281 145 39 30 chr1 39133794 39134028 -243059636 - MER46A DNA MER2_type 0 236 1 1791 154 0 4 chr1 39134049 39134322 -243059342 + AluSx SINE Alu 1 272 -40 255 61 0 0 chr1 39134395 39134428 -243059236 + (TA)n Simple_repeat Simple_repeat 1 33 0 1691 93 4 62 chr1 39134528 39134787 -243058877 - AluY SINE Alu -67 244 1 1078 113 0 0 chr1 39134789 39134931 -243058733 - AluY SINE Alu -169 142 1 2516 73 0 10 chr1 39135114 39135427 -243058237 - AluSp SINE Alu -2 311 2 726 155 0 9 chr1 39135613 39135729 -243057935 + FLAM_A SINE Alu 1 115 -18 1768 195 0 0 chr1 39136888 39137186 -243056478 + AluJo SINE Alu 1 298 -14 2309 84 0 14 chr1 39137624 39137920 -243055744 - AluSc SINE Alu -17 292 1 2320 90 0 0 chr1 39138013 39138301 -243055363 - AluSx SINE Alu -24 288 1 11366 132 88 73 chr1 39138573 39140189 -243053475 - Tigger1 DNA MER2_type -1 2417 827 2103 122 0 3 chr1 39140189 39140493 -243053171 - AluSc SINE Alu -6 303 1 932 102 0 7 chr1 39140493 39140630 -243053034 - AluSq/x SINE Alu -176 136 1 11366 132 88 73 chr1 39140630 39141235 -243052429 - Tigger1 DNA MER2_type -1590 828 24 2221 82 4 0 chr1 39141393 39141720 -243051944 - AluY SINE Alu 0 328 1 344 225 78 8 chr1 39141980 39142109 -243051555 - L1ME4a LINE L1 -15 6106 5969 237 292 56 0 chr1 39142118 39142190 -243051474 - MIR SINE MIR -76 186 111 2454 86 0 0 chr1 39142957 39143259 -243050405 + AluSp SINE Alu 1 302 -11 239 227 68 11 chr1 39143261 39143349 -243050315 - L1MC4 LINE L1 -1340 6702 6610 201 147 0 0 chr1 39143349 39143383 -243050281 + (TA)n Simple_repeat Simple_repeat 1 34 0 2007 102 27 20 chr1 39143548 39143841 -243049823 - AluSx SINE Alu -17 295 1 336 21 0 0 chr1 39144337 39144384 -243049280 - L1MA3 LINE L1 0 6305 6259 24 0 0 0 chr1 39144389 39144413 -243049251 + AT_rich Low_complexity Low_complexity 1 24 0 324 339 21 24 chr1 39144868 39145100 -243048564 + MIR SINE MIR 12 243 -19 452 249 18 98 chr1 39145845 39145923 -243047741 - MER112 DNA MER1_type -1 255 172 2021 121 9 19 chr1 39145923 39146238 -243047426 - AluSx SINE Alu 0 312 1 452 249 18 98 chr1 39146238 39146436 -243047228 - MER112 DNA MER1_type -84 172 1 1956 136 149 8 chr1 39147330 39147705 -243045959 - MSTA LTR MaLR 0 428 1 285 289 62 0 chr1 39147954 39148051 -243045613 + L2 LINE L2 3199 3301 -12 369 165 68 29 chr1 39149207 39149289 -243044375 + MER112 DNA MER1_type 5 93 -167 2398 104 0 0 chr1 39149289 39149598 -243044066 - AluSx SINE Alu -3 309 1 369 165 68 29 chr1 39149598 39149618 -243044046 + MER112 DNA MER1_type 93 111 -149 196 30 61 0 chr1 39149671 39149704 -243043960 + A-rich Low_complexity Low_complexity 3 37 0 853 112 15 22 chr1 39149795 39149929 -243043735 - FLAM_C SINE Alu 0 133 1 224 333 39 0 chr1 39150876 39150954 -243042710 + L2 LINE L2 3098 3178 -94 2357 108 3 0 chr1 39150959 39151266 -243042398 - AluSx SINE Alu -4 308 1 1645 138 116 8 chr1 39151397 39151665 -243041999 - AluSg1 SINE Alu -12 297 1 451 284 89 5 chr1 39151685 39151875 -243041789 + MIR SINE MIR 46 251 -11 418 242 38 147 chr1 39153186 39153224 -243040440 + MIR SINE MIR 2 43 -219 1894 158 3 16 chr1 39153224 39153528 -243040136 + AluJo SINE Alu 1 300 -12 418 242 38 147 chr1 39153528 39153614 -243040050 + MIR SINE MIR 43 137 -125 1606 173 25 62 chr1 39153614 39153625 -243040039 - AluJo SINE Alu -1 311 301 189 0 0 0 chr1 39153625 39153646 -243040018 + (TC)n Simple_repeat Simple_repeat 2 22 0 * 411 38 0 0 chr1 39153645 39153698 -243039966 + (TG)n Simple_repeat Simple_repeat 2 54 0 1606 173 25 62 chr1 39153646 39154009 -243039655 - AluJo SINE Alu -11 301 1 418 242 38 147 chr1 39154009 39154176 -243039488 + MIR SINE MIR 137 262 0 2180 119 0 0 chr1 39154266 39154559 -243039105 - AluSx SINE Alu -19 293 1 2305 119 0 0 chr1 39155355 39155665 -243037999 - AluSx SINE Alu 0 312 3 330 243 10 39 chr1 39155679 39155782 -243037882 + L2 LINE L2 3136 3235 -37 2288 91 7 3 chr1 39156076 39156372 -243037292 + AluSq SINE Alu 1 297 -16 881 263 4 52 chr1 39156405 39156569 -243037095 - MIR SINE MIR -1 261 114 2183 128 7 0 chr1 39156569 39156867 -243036797 + AluSq SINE Alu 1 300 -13 881 263 4 52 chr1 39156867 39156972 -243036692 - MIR SINE MIR -148 114 5 248 332 39 17 chr1 39156986 39157256 -243036408 + L1ME LINE L1 5233 5514 -652 1000 179 115 12 chr1 39157277 39157592 -243036072 - L1MC4 LINE L1 -848 6960 6594 2518 77 0 0 chr1 39157748 39158059 -243035605 + AluY SINE Alu 1 311 0 2092 100 7 0 chr1 39158081 39158468 -243035196 - AluSx SINE Alu 0 389 1 264 59 0 0 chr1 39158474 39158508 -243035156 + (TTCTC)n Simple_repeat Simple_repeat 1 34 0 1737 163 0 14 chr1 39158514 39158655 -243035009 - AluSx SINE Alu -39 273 136 2087 134 0 3 chr1 39158655 39158953 -243034711 - AluSq SINE Alu -16 297 1 1737 163 0 14 chr1 39158953 39159088 -243034576 - AluSx SINE Alu -176 136 1 2343 138 13 100 chr1 39159097 39159250 -243034414 - L1MC3 LINE L1 -8 7777 7612 2080 91 4 4 chr1 39159250 39159515 -243034149 - AluSx SINE Alu -18 294 30 2343 138 13 100 chr1 39159515 39159889 -243033775 - L1MC3 LINE L1 -173 7612 7296 180 0 0 0 chr1 39159899 39159919 -243033745 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1873 153 20 0 chr1 39159928 39160228 -243033436 - AluSx SINE Alu -6 306 1 1448 189 3 39 chr1 39160416 39160701 -243032963 + AluJo SINE Alu 13 287 -25 2718 13 0 10 chr1 39160708 39161012 -243032652 + AluY SINE Alu 1 301 -10 912 188 0 0 chr1 39161015 39161237 -243032427 + FRAM SINE Alu 1 86 0 1081 243 53 88 chr1 39161237 39161607 -243032057 - MLT1J LTR MaLR -92 419 64 2220 71 7 7 chr1 39161607 39161914 -243031750 + AluY SINE Alu 1 307 0 1081 243 53 88 chr1 39161914 39161974 -243031690 - MLT1J LTR MaLR -447 64 3 2506 97 0 0 chr1 39162115 39162426 -243031238 - AluSq SINE Alu -2 311 1 1923 157 0 3 chr1 39162691 39162984 -243030680 - AluSx SINE Alu -20 292 1 299 268 113 21 chr1 39163476 39163618 -243030046 - MIR SINE MIR -16 246 92 1904 168 0 3 chr1 39163767 39164070 -243029594 - AluJb SINE Alu -2 310 9 349 290 136 18 chr1 39164121 39164290 -243029374 + MER5A DNA MER1_type 1 189 0 718 217 7 0 chr1 39164824 39164967 -243028697 - MER69 DNA AcHobo -2 2524 2381 440 141 0 0 chr1 39165113 39165177 -243028487 - MER69 DNA AcHobo -1159 67 4 753 135 88 100 chr1 39165211 39165381 -243028283 - AluJb SINE Alu -8 304 137 22 35 0 0 chr1 39165486 39165515 -243028149 + AT_rich Low_complexity Low_complexity 1 29 0 810 127 17 0 chr1 39165515 39165633 -243028031 - FLAM_C SINE Alu -23 120 1 2135 130 3 0 chr1 39165899 39166198 -243027466 - AluSx SINE Alu -12 300 1 280 289 16 55 chr1 39166323 39166451 -243027213 - MIR3 SINE MIR -45 163 41 511 289 6 6 chr1 39166621 39166777 -243026887 + L1ME LINE L1 5565 5720 -401 2140 119 0 0 chr1 39166791 39167112 -243026552 + AluSc SINE Alu 3 323 0 2075 133 0 7 chr1 39167116 39167416 -243026248 + AluSx SINE Alu 1 298 -14 26 50 0 0 chr1 39167437 39167477 -243026187 + AT_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chr1 39167637 39167665 -243025999 + AT_rich Low_complexity Low_complexity 1 28 0 2270 101 0 14 chr1 39167665 39167962 -243025702 - AluSx SINE Alu -19 293 1 261 0 0 0 chr1 39167962 39167991 -243025673 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 1861 109 4 0 chr1 39167991 39168238 -243025426 - AluSq SINE Alu -30 283 36 1405 194 0 78 chr1 39168248 39168567 -243025097 - AluJo SINE Alu -18 294 1 1199 249 128 85 chr1 39168568 39169185 -243024479 - HAL1 LINE L1 -201 2306 1634 1442 186 49 33 chr1 39169185 39169429 -243024235 + AluJb SINE Alu 1 252 -60 183 42 0 0 chr1 39169429 39169453 -243024211 + (CACTG)n Simple_repeat Simple_repeat 1 24 0 1442 186 49 33 chr1 39169453 39169515 -243024149 + AluJb SINE Alu 252 312 0 1199 249 128 85 chr1 39169515 39169838 -243023826 - HAL1 LINE L1 -873 1634 1326 2110 102 7 0 chr1 39170049 39170324 -243023340 + AluY SINE Alu 13 289 -22 2228 109 3 0 chr1 39170731 39171025 -243022639 - AluSg SINE Alu -15 295 1 762 170 17 0 chr1 39171326 39171489 -243022175 - MER51A LTR ERV1 -3 637 480 244 114 114 139 chr1 39171580 39171659 -243022005 - MER51A LTR ERV1 -383 251 175 529 290 23 12 chr1 39171700 39171880 -243021784 - MER51A LTR ERV1 -339 301 1 310 318 54 0 chr1 39171882 39172030 -243021634 - MIR SINE MIR -25 237 82 216 350 61 18 chr1 39172238 39172273 -243021391 - L2 LINE L2 -240 3032 3000 1750 123 123 0 chr1 39172273 39172542 -243021122 - AluSx SINE Alu 0 302 1 216 350 61 18 chr1 39172542 39172669 -243020995 - L2 LINE L2 -272 3000 2863 326 244 42 101 chr1 39172810 39172929 -243020735 + Charlie1 DNA MER1_type 1 112 -2649 801 178 89 0 chr1 39172986 39173132 -243020532 - FAM SINE Alu -7 42 1 630 220 23 35 chr1 39173132 39173305 -243020359 + Charlie1 DNA MER1_type 1906 2076 -685 986 187 25 5 chr1 39173332 39173530 -243020134 - L1MB2 LINE L1 -50 6121 5920 243 0 0 0 chr1 39173577 39173604 -243020060 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 1805 138 0 0 chr1 39173617 39173863 -243019801 - AluSq SINE Alu -47 266 21 2475 128 2 33 chr1 39173938 39174053 -243019611 - L1MB2 LINE L1 -240 5931 5814 2215 127 0 0 chr1 39174053 39174361 -243019303 + AluSx SINE Alu 1 308 -4 2475 128 2 33 chr1 39174361 39174644 -243019020 - L1MB2 LINE L1 -357 5814 5545 4936 174 74 61 chr1 39174645 39174764 -243018900 + Charlie1a DNA MER1_type 100 216 -2545 2329 62 10 7 chr1 39174764 39175055 -243018609 - AluY SINE Alu -19 292 1 4936 174 74 61 chr1 39175055 39175168 -243018496 + Charlie1a DNA MER1_type 216 326 -2435 2294 115 3 0 chr1 39175168 39175472 -243018192 - AluSx SINE Alu -7 305 1 4936 174 74 61 chr1 39175472 39175588 -243018076 + Charlie1a DNA MER1_type 326 439 -2322 2281 115 3 0 chr1 39175588 39175900 -243017764 - AluSq SINE Alu 0 313 1 4936 174 74 61 chr1 39175900 39176404 -243017260 + Charlie1a DNA MER1_type 439 935 -1826 1945 116 6 69 chr1 39176404 39176499 -243017165 + AluSx SINE Alu 1 100 -212 2128 131 3 3 chr1 39176499 39176804 -243016860 + AluSq SINE Alu 1 305 -8 1945 116 6 69 chr1 39176804 39177028 -243016636 + AluSx SINE Alu 100 300 -12 4936 174 74 61 chr1 39177028 39177252 -243016412 + Charlie1a DNA MER1_type 935 1201 -1560 1899 123 62 0 chr1 39177252 39177544 -243016120 + AluSx SINE Alu 1 310 -2 4936 174 74 61 chr1 39177544 39177716 -243015948 + Charlie1a DNA MER1_type 1201 1369 -86 555 124 9 53 chr1 39177725 39177741 -243015923 - AluSg/x SINE Alu -1 308 293 1905 101 28 103 chr1 39177741 39177922 -243015742 - L1MA2 LINE L1 0 6304 6168 2208 98 3 17 chr1 39177922 39178219 -243015445 - AluSp SINE Alu -20 293 1 1905 101 28 103 chr1 39178219 39178434 -243015230 - L1MA2 LINE L1 -136 6168 5938 555 124 9 53 chr1 39178434 39178530 -243015134 - AluSg/x SINE Alu -16 293 201 516 117 0 78 chr1 39178678 39178789 -243014875 - L1 LINE L1 -1903 4243 4142 264 77 0 0 chr1 39178803 39178842 -243014822 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2076 111 7 0 chr1 39178845 39179125 -243014539 - AluSq SINE Alu -31 282 1 270 204 0 0 chr1 39179127 39179181 -243014483 + Charlie1a DNA MER1_type 1398 1451 -4 202 309 62 0 chr1 39179226 39179273 -243014391 - L2 LINE L2 -609 2705 2662 210 37 0 0 chr1 39179273 39179300 -243014364 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 202 309 62 0 chr1 39179300 39179349 -243014315 - L2 LINE L2 -652 2662 2603 531 286 141 60 chr1 39179415 39179648 -243014016 + L1MC4a LINE L1 5423 5636 -2172 279 0 0 0 chr1 39179648 39179679 -243013985 + (TA)n Simple_repeat Simple_repeat 1 31 0 531 286 141 60 chr1 39179679 39179839 -243013825 + L1MC4a LINE L1 5636 5782 -2026 1517 201 3 20 chr1 39179839 39180132 -243013532 + AluJb SINE Alu 1 288 -24 531 286 141 60 chr1 39180132 39180205 -243013459 + L1MC4a LINE L1 5782 5928 -1880 2473 62 0 38 chr1 39180216 39180536 -243013128 + AluY SINE Alu 1 308 -3 390 21 0 0 chr1 39180544 39180591 -243013073 + (TG)n Simple_repeat Simple_repeat 2 48 0 1766 133 3 58 chr1 39181169 39181463 -243012201 - AluJo SINE Alu -25 287 10 460 179 49 16 chr1 39181523 39181646 -243012018 - MIR SINE MIR -83 179 53 1769 141 8 0 chr1 39181658 39181921 -243011743 - AluSx SINE Alu -6 306 42 415 270 29 46 chr1 39181935 39182109 -243011555 + MIR3 SINE MIR 1 171 -37 1818 151 14 7 chr1 39182214 39182533 -243011131 + AluSx SINE Alu 1 321 0 2339 77 0 27 chr1 39182570 39182869 -243010795 - AluSc SINE Alu -18 291 1 476 209 108 8 chr1 39183034 39183163 -243010501 - FLAM_C SINE Alu 0 143 2 2514 62 0 3 chr1 39183509 39183814 -243009850 + AluY SINE Alu 1 304 -7 1860 180 3 0 chr1 39184059 39184365 -243009299 - AluJo SINE Alu -4 308 2 1799 187 15 12 chr1 39184422 39184765 -243008899 + MLT1E1 LTR MaLR 1 344 -310 657 156 18 0 chr1 39184769 39184901 -243008763 + AluSg/x SINE Alu 171 304 0 935 221 17 0 chr1 39184901 39185073 -243008591 + MLT1E1 LTR MaLR 339 513 -141 1694 123 0 0 chr1 39185110 39185337 -243008327 + AluSx SINE Alu 1 227 -85 767 116 16 8 chr1 39185437 39185581 -243008083 + AluY SINE Alu 161 305 0 935 221 17 0 chr1 39185581 39185753 -243007911 + MLT1E1 LTR MaLR 339 513 -141 2218 108 14 0 chr1 39185790 39186086 -243007578 + AluSx SINE Alu 1 300 -12 318 26 0 0 chr1 39186098 39186137 -243007527 + (TG)n Simple_repeat Simple_repeat 2 40 0 1147 244 145 41 chr1 39186158 39186523 -243007141 - MLT1H LTR MaLR -13 536 134 2357 211 16 2 chr1 39186525 39187031 -243006633 + L1ME2 LINE L1 5652 6164 0 183 241 241 0 chr1 39187106 39187189 -243006475 + MIR SINE MIR 70 172 -90 4506 151 24 109 chr1 39187190 39187228 -243006436 - L1MB3 LINE L1 0 6183 6143 2263 119 3 3 chr1 39187228 39187540 -243006124 + AluSx SINE Alu 1 312 0 4506 151 24 109 chr1 39187540 39187852 -243005812 - L1MB3 LINE L1 -40 6143 5806 2329 92 6 19 chr1 39187852 39188167 -243005497 - AluSq SINE Alu -2 311 1 4506 151 24 109 chr1 39188167 39188693 -243004971 - L1MB3 LINE L1 -377 5806 5237 2333 107 0 3 chr1 39188693 39189002 -243004662 - AluSx SINE Alu -4 308 1 1976 128 13 32 chr1 39189012 39189324 -243004340 - AluSx SINE Alu -6 306 1 4506 151 24 109 chr1 39189324 39189336 -243004328 - L1MB3 LINE L1 -955 5228 5217 2418 96 0 6 chr1 39189336 39189648 -243004016 - AluSg SINE Alu 0 310 1 4506 151 24 109 chr1 39189648 39189863 -243003801 - L1MB3 LINE L1 -966 5217 4985 1751 183 3 0 chr1 39189863 39190148 -243003516 - AluJb SINE Alu -23 289 4 4506 151 24 109 chr1 39190148 39190177 -243003487 - L1MB3 LINE L1 -1198 4985 5175 770 139 0 76 chr1 39190177 39190321 -243003343 - FLAM_C SINE Alu 0 133 1 4506 151 24 109 chr1 39190321 39190461 -243003203 - L1MB3 LINE L1 -1007 5176 5026 2527 47 10 7 chr1 39190461 39190762 -243002902 + AluY SINE Alu 1 302 -9 2041 73 45 42 chr1 39190891 39191177 -243002487 - AluSc SINE Alu -22 287 1 4467 203 19 63 chr1 39191177 39191741 -243001923 - L1MB3 LINE L1 -1190 4956 4368 1492 121 0 0 chr1 39191741 39191985 -243001679 - AluSg/x SINE Alu 0 310 87 4467 203 19 63 chr1 39191985 39192482 -243001182 - L1MB3 LINE L1 -1778 4368 3949 1878 155 7 17 chr1 39192482 39192779 -243000885 + AluJb SINE Alu 1 294 -18 4467 203 19 63 chr1 39192779 39192884 -243000780 - L1MB3 LINE L1 -2197 3949 3841 1030 185 0 0 chr1 39192902 39193075 -243000589 - FRAM SINE Alu -3 173 1 332 169 0 46 chr1 39193078 39193143 -243000521 - L1MB3 LINE L1 -2298 3848 3787 863 237 12 0 chr1 39193175 39193344 -243000320 + FAM SINE Alu 5 175 0 306 172 35 11 chr1 39193344 39193424 -243000240 + GA-rich Low_complexity Low_complexity 7 91 0 195 42 0 0 chr1 39193424 39193448 -243000216 + (CAAG)n Simple_repeat Simple_repeat 2 25 0 2389 208 21 51 chr1 39193448 39193632 -243000032 + MLT2B3 LTR ERVL 56 244 -310 2697 39 0 3 chr1 39193632 39193944 -242999720 - AluY SINE Alu 0 311 1 2389 208 21 51 chr1 39193944 39194273 -242999391 + MLT2B3 LTR ERVL 244 554 0 1954 192 25 102 chr1 39194274 39194942 -242998722 - L1MB3 LINE L1 -2352 3794 3178 35 41 0 0 chr1 39195034 39195083 -242998581 + AT_rich Low_complexity Low_complexity 1 49 0 2124 101 4 0 chr1 39195199 39195475 -242998189 + AluSx SINE Alu 1 277 -35 1056 101 16 53 chr1 39195592 39195730 -242997934 + L1MB3 LINE L1 6001 6132 -51 2429 48 7 7 chr1 39195730 39196025 -242997639 + AluY SINE Alu 1 295 -16 1056 101 16 53 chr1 39196025 39196075 -242997589 + L1MB3 LINE L1 6132 6182 -1 2324 72 0 78 chr1 39196087 39196421 -242997243 + AluSg SINE Alu 3 310 0 299 240 0 0 chr1 39196428 39196503 -242997161 + L1ME3A LINE L1 6095 6169 -1 846 179 92 123 chr1 39196514 39196814 -242996850 + L1ME LINE L1 5514 5793 -328 1471 107 10 0 chr1 39196815 39197011 -242996653 + AluSq SINE Alu 2 199 -114 1127 153 14 69 chr1 39197399 39197502 -242996162 - LTR47A LTR ERVL 0 452 366 867 183 6 57 chr1 39197502 39197677 -242995987 - FRAM SINE Alu 0 166 1 1127 153 14 69 chr1 39197677 39197789 -242995875 - LTR47A LTR ERVL -86 366 249 1321 152 87 4 chr1 39197945 39198175 -242995489 - LTR47A LTR ERVL -203 249 1 185 189 27 0 chr1 39198321 39198358 -242995306 + MIR SINE MIR 218 255 -7 2128 149 0 110 chr1 39198403 39198735 -242994929 - MLT2D LTR ERVL 0 414 146 2074 125 0 14 chr1 39198735 39199023 -242994641 - AluSx SINE Alu -28 284 1 2128 149 0 110 chr1 39199023 39199154 -242994510 - MLT2D LTR ERVL -268 146 2 1011 165 31 10 chr1 39199294 39199488 -242994176 - AluJb SINE Alu 0 312 115 230 308 87 19 chr1 39199905 39200009 -242993655 + Charlie8 DNA MER1_type 2 112 -2305 1759 156 62 29 chr1 39200009 39200057 -242993607 + L1MB8 LINE L1 5779 5824 -354 2198 95 7 20 chr1 39200057 39200361 -242993303 + AluSc SINE Alu 1 300 -9 1759 156 62 29 chr1 39200361 39200621 -242993043 + L1MB8 LINE L1 5824 6106 -72 2090 136 3 0 chr1 39200621 39200916 -242992748 + AluSx SINE Alu 9 304 -8 1759 156 62 29 chr1 39200916 39200986 -242992678 + L1MB8 LINE L1 6106 6172 -6 2908 116 25 2 chr1 39201000 39201447 -242992217 + L1MB2 LINE L1 5636 6092 -79 198 0 0 0 chr1 39201447 39201469 -242992195 + (T)n Simple_repeat Simple_repeat 1 22 0 265 244 85 0 chr1 39201620 39201702 -242991962 + L2 LINE L2 3225 3313 0 576 149 0 0 chr1 39201883 39201970 -242991694 - AluS SINE Alu -225 88 2 312 315 251 3 chr1 39201971 39202266 -242991398 + L2 LINE L2 2326 2693 -621 495 132 0 0 chr1 39202266 39202360 -242991304 - AluS SINE Alu 0 317 224 419 314 14 88 chr1 39202363 39202560 -242991104 + L2 LINE L2 2702 2871 -443 2563 66 0 0 chr1 39202560 39202862 -242990802 - AluY SINE Alu 0 311 10 419 314 14 88 chr1 39202862 39202960 -242990704 + L2 LINE L2 2871 2975 -339 603 92 0 0 chr1 39203211 39203298 -242990366 - Alu SINE Alu 0 310 224 1087 137 0 0 chr1 39203298 39203444 -242990220 - AluSq/x SINE Alu -167 146 1 276 248 232 8 chr1 39203444 39203569 -242990095 + L2 LINE L2 3161 3313 0 1480 199 0 36 chr1 39203714 39204016 -242989648 + AluJo SINE Alu 1 291 -21 2178 110 0 0 chr1 39204168 39204489 -242989175 - AluSx SINE Alu 0 321 1 700 186 65 0 chr1 39204598 39204722 -242988942 - FLAM_A SINE Alu -1 132 1 365 329 117 30 chr1 39204777 39205363 -242988301 + L2 LINE L2 2594 3225 -47 220 139 0 23 chr1 39206277 39206320 -242987344 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 876 108 0 0 chr1 39206645 39206775 -242986889 + (TA)n Simple_repeat Simple_repeat 1 130 0 311 340 85 16 chr1 39206839 39207145 -242986519 + L1MC4a LINE L1 5040 5366 -780 279 133 0 0 chr1 39207269 39207314 -242986350 + (TCTCCC)n Simple_repeat Simple_repeat 4 48 0 189 283 0 0 chr1 39207335 39207381 -242986283 - L2 LINE L2 0 3272 3227 394 247 11 0 chr1 39207582 39207671 -242985993 + MER91B DNA MER1_type 91 180 -10 314 291 170 28 chr1 39207763 39207945 -242985719 - MIR SINE MIR -54 208 1 1958 119 38 10 chr1 39208240 39208533 -242985131 + AluSx SINE Alu 1 301 -11 200 31 62 0 chr1 39208534 39208566 -242985098 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1804 145 10 21 chr1 39208610 39208809 -242984855 + AluJb SINE Alu 1 198 -114 2496 209 162 35 chr1 39208809 39209542 -242984122 - LTR1B LTR ERV1 0 826 1 1804 145 10 21 chr1 39209542 39209631 -242984033 + AluJb SINE Alu 198 286 -26 351 113 0 0 chr1 39209632 39209685 -242983979 + (CA)n Simple_repeat Simple_repeat 2 54 0 2120 142 0 0 chr1 39209803 39210099 -242983565 + AluSx SINE Alu 1 296 -16 259 208 0 0 chr1 39210099 39210147 -242983517 + AluJ/monomer SINE Alu 1 48 -253 1155 153 37 41 chr1 39210251 39210433 -242983231 + LTR2B LTR ERV1 250 432 -58 2646 46 0 3 chr1 39210433 39210736 -242982928 - AluY SINE Alu -8 303 2 1155 153 37 41 chr1 39210736 39210795 -242982869 + LTR2B LTR ERV1 432 490 0 4059 71 36 29 chr1 39210795 39211374 -242982290 + Harlequin LTR ERV1 1 583 -6313 462 225 33 25 chr1 39211500 39211620 -242982044 - FLAM_C SINE Alu -12 121 1 1226 268 85 20 chr1 39211622 39212114 -242981550 + L1MC4a LINE L1 5393 5916 -1892 261 71 0 0 chr1 39212781 39212823 -242980841 + Alu SINE Alu 258 299 -1 1606 156 7 78 chr1 39212868 39213000 -242980664 + AluJo SINE Alu 6 146 -166 1836 128 27 40 chr1 39213000 39213298 -242980366 - AluSg SINE Alu -16 294 1 1606 156 7 78 chr1 39213298 39213473 -242980191 + AluJo SINE Alu 146 291 -21 656 174 33 144 chr1 39213476 39213554 -242980110 + L1ME2 LINE L1 5821 5906 -258 2192 101 0 0 chr1 39213554 39213830 -242979834 + AluSg1 SINE Alu 1 276 -33 249 33 0 0 chr1 39213830 39213860 -242979804 + (CA)n Simple_repeat Simple_repeat 1 30 0 656 174 33 144 chr1 39213860 39214050 -242979614 + L1ME2 LINE L1 5904 6060 -104 1425 136 94 45 chr1 39214053 39214361 -242979303 + MER65A LTR ERV1 1 323 -122 31 0 0 0 chr1 39214652 39214683 -242978981 + AT_rich Low_complexity Low_complexity 1 31 0 826 138 17 0 chr1 39214881 39214997 -242978667 - AluJb SINE Alu -188 124 7 2051 125 0 17 chr1 39215006 39215329 -242978335 - AluSx SINE Alu 0 318 1 2065 145 0 0 chr1 39215478 39215775 -242977889 + AluSx SINE Alu 1 297 -15 1710 163 17 7 chr1 39215943 39216238 -242977426 - AluJb SINE Alu -14 298 1 2024 115 34 3 chr1 39216242 39216537 -242977127 - AluSq SINE Alu -9 304 1 739 75 150 33 chr1 39216856 39216976 -242976688 - AluSq/x SINE Alu -176 137 4 2391 63 7 0 chr1 39217102 39217388 -242976276 - AluY SINE Alu -22 289 2 868 260 109 23 chr1 39217389 39217739 -242975925 - L2 LINE L2 -1171 2143 1764 2059 134 7 16 chr1 39217742 39218049 -242975615 + AluSx SINE Alu 1 304 -8 2093 121 3 23 chr1 39218049 39218353 -242975311 + AluSg SINE Alu 1 299 -11 666 62 0 0 chr1 39218526 39218607 -242975057 - HY3 scRNA scRNA -20 81 1 215 363 38 19 chr1 39218609 39218769 -242974895 - L2 LINE L2 -1767 1547 1385 2319 95 0 3 chr1 39218769 39219065 -242974599 + AluSx SINE Alu 1 295 -17 358 255 48 58 chr1 39219097 39219305 -242974359 - L2 LINE L2 -2416 898 693 2021 118 28 3 chr1 39219306 39219594 -242974070 - AluSc SINE Alu -14 295 1 1050 78 8 0 chr1 39219596 39219725 -242973939 - AluSq/x SINE Alu -181 132 3 531 191 22 96 chr1 39219726 39219862 -242973802 + AluJb SINE Alu 186 311 -1 2283 81 3 19 chr1 39220246 39220553 -242973111 - AluSq SINE Alu -11 302 1 319 202 18 119 chr1 39221161 39221229 -242972435 + MER5A DNA MER1_type 9 64 -125 1730 143 79 4 chr1 39221229 39221509 -242972155 + AluSx SINE Alu 1 301 -11 319 202 18 119 chr1 39221509 39221549 -242972115 + MER5A DNA MER1_type 64 106 -83 280 222 86 0 chr1 39221656 39221737 -242971927 + MIR SINE MIR 175 262 0 1657 86 9 14 chr1 39221972 39222193 -242971471 - AluSg SINE Alu -90 220 1 1071 81 0 7 chr1 39222194 39222330 -242971334 - AluSq/x SINE Alu -178 135 1 228 224 0 0 chr1 39223347 39223445 -242970219 + (CCG)n Simple_repeat Simple_repeat 3 100 0 31 0 0 0 chr1 39223892 39223923 -242969741 + GC_rich Low_complexity Low_complexity 1 31 0 25 51 0 0 chr1 39224061 39224100 -242969564 + GC_rich Low_complexity Low_complexity 1 39 0 1875 128 22 0 chr1 39225918 39226192 -242967472 - AluSx SINE Alu -32 280 1 2063 131 0 7 chr1 39226200 39226505 -242967159 - AluSq SINE Alu -10 303 1 1945 141 10 13 chr1 39227199 39227497 -242966167 - AluSx SINE Alu -15 297 1 1202 159 198 31 chr1 39227498 39227756 -242965908 - AluJo SINE Alu -1 301 1 2132 118 6 6 chr1 39228410 39228723 -242964941 - AluSq SINE Alu 0 313 1 207 0 0 0 chr1 39229230 39229253 -242964411 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 192 158 0 0 chr1 39231901 39231939 -242961725 + T-rich Low_complexity Low_complexity 1 38 0 2359 72 10 3 chr1 39232655 39232946 -242960718 + AluSg SINE Alu 1 293 -17 224 333 39 0 chr1 39236299 39236377 -242957287 + L2 LINE L2 3098 3178 -94 2358 80 0 29 chr1 39236382 39236696 -242956968 - AluSc SINE Alu -4 305 1 476 209 108 8 chr1 39236861 39236990 -242956674 - FLAM_C SINE Alu 0 143 2 2506 62 0 3 chr1 39237336 39237640 -242956024 + AluY SINE Alu 1 303 -8 1121 216 0 4 chr1 39237885 39238112 -242955552 - AluJo SINE Alu -4 308 83 464 132 15 0 chr1 39238365 39238433 -242955231 - AluSq/x SINE Alu -194 118 50 2028 149 0 0 chr1 39238705 39238993 -242954671 - AluSx SINE Alu -24 288 1 7513 87 39 29 chr1 39238994 39239238 -242954426 - MER4-int LTR ERV1 -128 6470 6230 2229 110 13 0 chr1 39239238 39239537 -242954127 + AluSp SINE Alu 1 303 -10 7513 87 39 29 chr1 39239537 39240229 -242953435 - MER4-int LTR ERV1 -368 6230 5517 2326 92 10 0 chr1 39240229 39240521 -242953143 - AluY SINE Alu -16 295 1 7513 87 39 29 chr1 39240521 39240739 -242952925 - MER4-int LTR ERV1 -1081 5517 5303 886 159 115 0 chr1 39240751 39240908 -242952756 - AluSq SINE Alu -2 311 137 918 78 8 8 chr1 39240911 39241040 -242952624 - MER4-int LTR ERV1 -5477 1121 993 375 135 0 77 chr1 39241038 39241179 -242952485 - MER4-int LTR ERV1 -5712 886 687 * 1901 138 35 73 chr1 39241204 39241794 -242951870 - MER4-int LTR ERV1 -5789 809 98 1230 132 0 37 chr1 39241898 39242087 -242951577 + AluSg/x SINE Alu 116 297 -15 2346 96 0 0 chr1 39242097 39242398 -242951266 + AluSx SINE Alu 1 301 -11 1691 168 36 7 chr1 39242406 39242709 -242950955 - AluJb SINE Alu 0 312 1 200 253 11 126 chr1 39242764 39242812 -242950852 + L2 LINE L2 2265 2301 -1013 2055 44 56 11 chr1 39242812 39243111 -242950553 + AluY SINE Alu 1 311 0 200 253 11 126 chr1 39243111 39243148 -242950516 + L2 LINE L2 2301 2341 -973 228 114 29 0 chr1 39243153 39243188 -242950476 - Alu SINE Alu -85 217 182 2370 85 3 3 chr1 39243367 39243661 -242950003 - AluSp SINE Alu -19 294 1 964 106 43 0 chr1 39243783 39243924 -242949740 - L1PA7 LINE L1 0 6154 6008 2531 50 0 7 chr1 39244120 39244419 -242949245 + AluY SINE Alu 1 297 -14 1277 82 0 0 chr1 39244430 39244588 -242949076 + AluY SINE Alu 150 307 -4 366 200 0 0 chr1 39245063 39245123 -242948541 + U4 snRNA snRNA 1 60 -85 2119 132 0 6 chr1 39245214 39245525 -242948139 + AluSg SINE Alu 1 309 -1 477 161 0 0 chr1 39245810 39245897 -242947767 + (CA)n Simple_repeat Simple_repeat 2 88 0 2188 102 0 0 chr1 39245897 39246182 -242947482 - AluSg SINE Alu -25 285 1 1728 120 0 4 chr1 39246248 39246490 -242947174 - AluSg1 SINE Alu -18 291 51 3035 173 52 83 chr1 39246613 39247419 -242946245 - Charlie1a DNA MER1_type -531 924 144 1139 205 66 4 chr1 39247435 39247679 -242945985 - L1MB5 LINE L1 -8 6166 5908 266 157 0 59 chr1 39247684 39247735 -242945929 - Alu SINE Alu -15 287 240 1547 156 3 25 chr1 39247736 39248019 -242945645 - L1MB5 LINE L1 -277 5897 5621 480 179 186 97 chr1 39248019 39248164 -242945500 - Charlie1a DNA MER1_type -1297 158 1 758 214 0 23 chr1 39248278 39248409 -242945255 + FLAM_A SINE Alu 1 128 -5 22 56 0 0 chr1 39249412 39249448 -242944216 + AT_rich Low_complexity Low_complexity 1 36 0 2397 89 0 16 chr1 39249449 39249764 -242943900 - AluY SINE Alu -1 310 1 1008 184 0 0 chr1 39249767 39249925 -242943739 - AluJo/FRAM SINE Alu -8 294 137 1310 177 40 4 chr1 39249927 39250175 -242943489 - AluJo SINE Alu 0 312 56 1766 148 16 23 chr1 39250332 39250636 -242943028 - AluJo SINE Alu -8 304 3 2485 64 0 13 chr1 39251753 39252067 -242941597 - AluY SINE Alu -1 310 1 1229 189 13 4 chr1 39252556 39252789 -242940875 - Zaphod DNA AcHobo -8 4023 3789 644 233 42 21 chr1 39252781 39252970 -242940694 - Zaphod DNA AcHobo -588 3443 3251 * 904 158 0 7 chr1 39253022 39253168 -242940496 - AluSc SINE Alu -9 300 156 807 231 39 5 chr1 39253169 39253377 -242940287 - Zaphod DNA AcHobo -782 3249 3035 1996 123 3 17 chr1 39253402 39253702 -242939962 - AluSg1 SINE Alu -13 296 1 2132 120 7 10 chr1 39253702 39254011 -242939653 - AluSx SINE Alu -4 308 1 1161 134 0 6 chr1 39254146 39254318 -242939346 - AluSp SINE Alu -14 299 129 1063 195 11 50 chr1 39254600 39254882 -242938782 - AluSx SINE Alu -41 271 1 1962 119 21 3 chr1 39254896 39255249 -242938415 - AluSx SINE Alu 0 375 18 2093 104 10 3 chr1 39255627 39255936 -242937728 - AluSx SINE Alu 0 312 1 33 43 0 0 chr1 39256771 39256818 -242936846 + AT_rich Low_complexity Low_complexity 1 47 0 1889 151 21 7 chr1 39256912 39257203 -242936461 + AluJo SINE Alu 1 295 -17 1825 148 65 0 chr1 39257567 39257858 -242935806 + AluSx SINE Alu 1 310 -2 277 316 86 11 chr1 39257858 39258032 -242935632 + MER117 DNA MER1_type 1 187 -10 25 0 0 0 chr1 39258127 39258152 -242935512 + AT_rich Low_complexity Low_complexity 1 25 0 2323 106 3 0 chr1 39258374 39258677 -242934987 + AluSg SINE Alu 1 304 -6 1259 141 21 5 chr1 39258684 39258875 -242934789 + AluJo SINE Alu 1 194 -118 722 89 20 10 chr1 39258875 39258976 -242934688 - AluSp/q SINE Alu -14 299 198 488 146 11 0 chr1 39259091 39259180 -242934484 + CT-rich Low_complexity Low_complexity 2 91 0 830 186 0 0 chr1 39259192 39259316 -242934348 - AluJb SINE Alu -187 125 2 295 146 73 0 chr1 39259316 39259371 -242934293 - MLT1C-int LTR MaLR -1312 59 1 1550 226 81 34 chr1 39259371 39259817 -242933847 - MLT1C LTR MaLR 0 467 1 27 29 0 0 chr1 39259844 39259878 -242933786 + AT_rich Low_complexity Low_complexity 1 34 0 2289 95 0 0 chr1 39259882 39260178 -242933486 + AluY SINE Alu 1 296 -15 907 174 3 37 chr1 39260219 39260522 -242933142 + L1MA7 LINE L1 5874 6279 -12 220 27 54 0 chr1 39260532 39260569 -242933095 + (TA)n Simple_repeat Simple_repeat 2 40 0 2363 158 93 7 chr1 39260571 39261033 -242932631 - L1MB4 LINE L1 -33 6147 5646 920 206 50 63 chr1 39261037 39261380 -242932284 + MSTB2 LTR MaLR 5 457 0 2165 162 17 127 chr1 39261380 39261435 -242932229 - L1MB4 LINE L1 -530 5650 5591 1774 191 0 0 chr1 39261435 39261739 -242931925 - AluJb SINE Alu -8 304 1 2165 162 17 127 chr1 39261739 39261871 -242931793 - L1MB4 LINE L1 -589 5591 5446 1784 137 0 55 chr1 39261871 39262164 -242931500 - AluSx SINE Alu 0 312 36 2165 162 17 127 chr1 39262164 39262211 -242931453 - L1MB4 LINE L1 -734 5446 5395 2507 71 3 3 chr1 39262211 39262521 -242931143 - AluY SINE Alu -1 310 1 2165 162 17 127 chr1 39262521 39262845 -242930819 - L1MB4 LINE L1 -785 5395 5198 2855 19 0 0 chr1 39262845 39263160 -242930504 - AluYb8 SINE Alu -3 315 1 2165 162 17 127 chr1 39263160 39263480 -242930184 - L1MB4 LINE L1 -982 5198 4844 1399 212 21 75 chr1 39263484 39263871 -242929793 - MLT1A2 LTR MaLR -8 366 1 1741 216 26 16 chr1 39263876 39264306 -242929358 - L1MB4 LINE L1 -1303 4843 4410 * 2131 233 16 31 chr1 39264304 39264359 -242929305 + L1 LINE L1 3843 3897 -2249 1356 143 143 78 chr1 39264359 39264681 -242928983 - MER2 DNA MER2_type 0 344 2 2131 233 16 31 chr1 39264681 39265205 -242928459 + L1 LINE L1 3897 4413 -1733 517 285 17 17 chr1 39265212 39265384 -242928280 - L1MC5 LINE L1 -1095 6866 6695 1465 165 29 70 chr1 39265480 39265795 -242927869 - AluJo SINE Alu -10 302 1 871 124 0 29 chr1 39266084 39266221 -242927443 - FLAM_C SINE Alu -1 142 10 217 0 0 57 chr1 39266448 39266483 -242927181 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 2219 97 0 0 chr1 39266489 39266767 -242926897 - AluSg SINE Alu -32 278 1 458 171 24 0 chr1 39266769 39266851 -242926813 - AluJ/FRAM SINE Alu -13 299 216 220 350 142 16 chr1 39266858 39267041 -242926623 + L2 LINE L2 2381 2586 -728 191 320 120 0 chr1 39267822 39267897 -242925767 - L2 LINE L2 0 3272 3189 657 272 141 10 chr1 39268070 39268360 -242925304 - L2 LINE L2 -606 2708 2381 1206 206 14 9 chr1 39268463 39268681 -242924983 - MER20 DNA MER1_type 0 219 1 2015 136 0 0 chr1 39268808 39269129 -242924535 - AluSx SINE Alu 0 323 3 1861 137 24 10 chr1 39269303 39269595 -242924069 - AluJo SINE Alu -16 296 1 702 156 16 8 chr1 39269596 39269724 -242923940 + L1MB8 LINE L1 6045 6173 -5 523 246 18 0 chr1 39269825 39269960 -242923704 - L1ME1 LINE L1 0 6184 6039 331 189 78 22 chr1 39269960 39270050 -242923614 - L1ME1 LINE L1 -484 5682 5598 * 470 152 71 0 chr1 39270045 39270144 -242923520 - L1ME1 LINE L1 -842 5304 5199 391 196 0 72 chr1 39270147 39270244 -242923420 - FLAM_A SINE Alu -2 131 42 538 136 19 10 chr1 39270244 39270347 -242923317 - L1ME1 LINE L1 -951 5195 5092 2215 107 17 7 chr1 39270498 39270798 -242922866 - AluSq SINE Alu -10 303 1 1894 165 0 13 chr1 39271043 39271352 -242922312 - 7SLRNA srpRNA srpRNA -5 315 11 2090 120 0 7 chr1 39271371 39271662 -242922002 - AluSx SINE Alu -22 290 2 1834 172 0 14 chr1 39271868 39272164 -242921500 - AluJo SINE Alu -15 297 6 2093 123 0 10 chr1 39272179 39272481 -242921183 - AluSx SINE Alu -13 299 1 2136 86 57 0 chr1 39272734 39273014 -242920650 + AluY SINE Alu 1 296 -15 240 277 42 34 chr1 39273147 39273266 -242920398 + L1M4 LINE L1 4497 4616 -1530 1179 284 90 35 chr1 39273861 39274340 -242919324 - L2 LINE L2 -5 3308 2804 877 180 73 22 chr1 39274345 39274523 -242919141 - MER20 DNA MER1_type -30 189 3 1233 274 75 22 chr1 39274531 39275038 -242918626 - HERVL LTR ERVL -3111 1885 1347 364 291 72 64 chr1 39275332 39275597 -242918067 - HERVL LTR ERVL -4731 1033 767 269 304 0 0 chr1 39275609 39275688 -242917976 - HERVL LTR ERVL -5036 618 540 2376 102 0 3 chr1 39275705 39276019 -242917645 - AluSq SINE Alu 0 313 1 236 109 0 22 chr1 39276031 39276077 -242917587 - Alu SINE Alu 0 302 258 287 303 50 0 chr1 39276077 39276176 -242917488 - HERVL LTR ERVL -5197 567 464 627 154 185 99 chr1 39276203 39276365 -242917299 + AluJb SINE Alu 124 299 -13 806 166 43 111 chr1 39276763 39277016 -242916648 - LTR41 LTR ERVL -17 756 521 1026 189 5 25 chr1 39277095 39277291 -242916373 + AluJb SINE Alu 99 290 -22 874 194 26 11 chr1 39277530 39277728 -242915936 - LTR41 LTR ERVL -564 231 5 4347 240 64 66 chr1 39277733 39277906 -242915758 - L1MEc LINE L1 -4588 1808 1636 840 212 0 0 chr1 39277906 39278038 -242915626 - FLAM_A SINE Alu 0 133 2 4347 240 64 66 chr1 39278038 39278142 -242915522 - L1MEc LINE L1 -4760 1636 1533 3763 106 30 126 chr1 39278142 39278657 -242915007 - MER51A LTR ERV1 0 634 202 2301 97 0 3 chr1 39278657 39278966 -242914698 - AluY SINE Alu -2 309 2 3763 106 30 126 chr1 39278966 39279151 -242914513 - MER51A LTR ERV1 -432 202 1 4347 240 64 66 chr1 39279151 39280137 -242913527 - L1MEc LINE L1 -4863 1533 547 2134 131 3 0 chr1 39280137 39280435 -242913229 + AluSx SINE Alu 1 299 -13 4347 240 64 66 chr1 39280435 39280950 -242912714 - L1MEc LINE L1 -5849 547 32 365 257 9 106 chr1 39280987 39281073 -242912591 + MER58 DNA MER1_type 1 75 -140 1725 152 9 35 chr1 39281073 39281251 -242912413 - AluJb SINE Alu -5 307 139 2443 88 0 0 chr1 39281251 39281557 -242912107 - AluY SINE Alu -5 306 1 1725 152 9 35 chr1 39281557 39281693 -242911971 - AluJb SINE Alu -173 139 1 365 257 9 106 chr1 39281693 39281719 -242911945 + MER58 DNA MER1_type 75 102 -113 906 217 0 0 chr1 39281947 39282099 -242911565 - FRAM SINE Alu -14 152 1 1438 102 0 39 chr1 39282120 39282326 -242911338 - AluSc SINE Alu -111 198 1 1684 73 0 0 chr1 39282579 39282799 -242910865 - HERVH LTR ERV1 -7493 220 1 2965 87 92 5 chr1 39282801 39283213 -242910451 - LTR7 LTR ERV1 -2 448 1 24682 57 15 13 chr1 39283213 39286015 -242907649 - HERVH LTR ERV1 -1457 5439 2629 2511 84 3 0 chr1 39286015 39286325 -242907339 + AluSp SINE Alu 1 311 -2 24682 57 15 13 chr1 39286325 39286614 -242907050 - HERVH LTR ERV1 -4267 2629 2342 412 70 91 7 chr1 39289196 39289339 -242904325 + (TA)n Simple_repeat Simple_repeat 2 156 0 2251 113 0 0 chr1 39289348 39289650 -242904014 + AluSx SINE Alu 1 302 -10 203 328 0 30 chr1 39290755 39290822 -242902842 - L2 LINE L2 -17 3255 3191 2153 125 0 10 chr1 39290872 39291177 -242902487 - AluSx SINE Alu -10 302 1 26 50 0 0 chr1 39291306 39291346 -242902318 + AT_rich Low_complexity Low_complexity 1 40 0 2260 113 0 3 chr1 39291778 39292079 -242901585 + AluSq SINE Alu 1 300 -13 1679 148 13 46 chr1 39292501 39292806 -242900858 + AluJb SINE Alu 6 300 -12 1740 161 10 23 chr1 39292816 39293126 -242900538 + AluJb SINE Alu 1 306 -6 2242 108 3 7 chr1 39293174 39293480 -242900184 + AluSx SINE Alu 1 305 -7 30 0 0 0 chr1 39293679 39293709 -242899955 + AT_rich Low_complexity Low_complexity 1 30 0 1597 85 0 9 chr1 39293809 39294020 -242899644 + AluSg/x SINE Alu 91 299 -13 1018 116 236 112 chr1 39294183 39294433 -242899231 - MER4A LTR ERV1 -123 541 261 616 113 21 10 chr1 39294433 39294530 -242899134 - MER4A LTR ERV1 -566 98 1 655 169 157 0 chr1 39294754 39294932 -242898732 - L1MB4 LINE L1 -32 6148 5943 2071 181 100 31 chr1 39294934 39295392 -242898272 - LTR2B LTR ERV1 0 490 1 4439 58 0 6 chr1 39295392 39295941 -242897723 - Harlequin LTR ERV1 0 6896 6351 339 47 23 0 chr1 39295941 39295984 -242897680 + LTR7 LTR ERV1 1 44 -406 1962 135 59 3 chr1 39295988 39296328 -242897336 - HERVH LTR ERV1 -33 7680 7322 1376 139 19 0 chr1 39296326 39296542 -242897122 - HERVH LTR ERV1 -1894 5819 5600 * 8600 95 3 9 chr1 39296543 39298631 -242895033 - HERVH LTR ERV1 -1866 5225 3140 * 15442 114 2 10 chr1 39298610 39300907 -242892757 - HERVH LTR ERV1 -4718 2995 718 2040 126 0 3 chr1 39301344 39301645 -242892019 - AluSx SINE Alu -11 301 2 1177 174 4 21 chr1 39301859 39302100 -242891564 - AluSx SINE Alu -75 237 1 922 86 0 0 chr1 39302505 39302621 -242891043 + AluSg SINE Alu 1 116 -194 1439 118 0 42 chr1 39302621 39302859 -242890805 + AluY SINE Alu 68 295 -16 1923 132 7 7 chr1 39302979 39303282 -242890382 - AluSq SINE Alu -10 303 1 2018 117 3 3 chr1 39303319 39303617 -242890047 + AluSp SINE Alu 1 298 -15 2142 102 10 10 chr1 39303619 39303924 -242889740 + AluSq SINE Alu 1 305 -8 1918 66 74 0 chr1 39304103 39304374 -242889290 + AluY SINE Alu 1 291 -20 568 249 228 5 chr1 39304502 39304695 -242888969 - MIR SINE MIR -24 238 3 1965 132 7 7 chr1 39304769 39305065 -242888599 + AluSx SINE Alu 1 296 -16 1837 119 7 26 chr1 39305376 39305679 -242887985 + AluSx SINE Alu 3 299 -13 1243 153 15 0 chr1 39306168 39306370 -242887294 + AluJo SINE Alu 88 292 -20 2249 55 0 7 chr1 39306926 39307242 -242886422 + AluY SINE Alu 1 314 0 1857 143 79 16 chr1 39308145 39308460 -242885204 - MER6 DNA MER2_type -530 335 1 1790 113 10 20 chr1 39308773 39309065 -242884599 + AluSx SINE Alu 3 291 -21 388 220 73 0 chr1 39309203 39309312 -242884352 - L1MEc LINE L1 -3574 2641 2525 2187 95 3 13 chr1 39309336 39309641 -242884023 - AluSx SINE Alu -10 302 1 1355 206 22 0 chr1 39309657 39309933 -242883731 - AluJb SINE Alu -26 286 5 665 184 14 106 chr1 39309982 39310116 -242883548 - L1MEc LINE L1 -4013 2383 2238 1695 168 3 17 chr1 39310116 39310413 -242883251 + AluJb SINE Alu 1 293 -19 665 184 14 106 chr1 39310413 39310450 -242883214 - L1MEc LINE L1 -4158 2238 2233 1567 134 100 7 chr1 39310450 39310719 -242882945 - AluSq SINE Alu -19 294 1 665 184 14 106 chr1 39310719 39310763 -242882901 - L1MEc LINE L1 -4163 2233 2187 2187 91 0 10 chr1 39310863 39311159 -242882505 - AluSg SINE Alu -17 293 1 659 249 28 61 chr1 39311159 39311372 -242882292 - LTR2 LTR ERV1 -243 206 1 225 250 0 0 chr1 39311374 39311426 -242882238 - L1MB4 LINE L1 -239 5941 5890 1552 107 9 0 chr1 39311444 39311668 -242881996 - AluSg SINE Alu -84 226 1 264 30 0 0 chr1 39311673 39311706 -242881958 + (TA)n Simple_repeat Simple_repeat 2 34 0 1730 88 4 66 chr1 39311746 39312018 -242881646 - AluSq SINE Alu -48 265 11 1931 118 14 7 chr1 39312033 39312330 -242881334 - AluSc SINE Alu -10 299 1 963 167 71 5 chr1 39312332 39312542 -242881122 - L1MB4 LINE L1 -272 5908 5685 * 1642 263 57 9 chr1 39312533 39312701 -242880963 - L1MEc LINE L1 -5450 946 787 1914 140 3 7 chr1 39312701 39312994 -242880670 - AluSx SINE Alu -20 292 1 1642 263 57 9 chr1 39312994 39313354 -242880310 - L1MEc LINE L1 -5609 787 393 479 284 52 86 chr1 39313391 39313468 -242880196 + MER34 LTR ERV1 1 79 -463 1654 147 38 3 chr1 39313468 39313761 -242879903 + AluSx SINE Alu 1 303 -9 479 284 52 86 chr1 39313761 39314083 -242879581 + MER34 LTR ERV1 79 347 -195 2028 112 7 0 chr1 39314083 39314378 -242879286 + AluSx SINE Alu 1 297 -15 479 284 52 86 chr1 39314378 39314534 -242879130 + MER34 LTR ERV1 347 507 -35 1025 220 37 15 chr1 39314581 39314849 -242878815 + L1MCa LINE L1 57 330 -6096 791 158 0 15 chr1 39314856 39314989 -242878675 + FLAM_C SINE Alu 2 132 -11 989 139 0 0 chr1 39315009 39315153 -242878511 + AluSq/x SINE Alu 3 146 -167 2025 84 0 34 chr1 39315153 39315449 -242878215 + AluY SINE Alu 1 286 -25 22 0 0 0 chr1 39315458 39315480 -242878184 + AT_rich Low_complexity Low_complexity 1 22 0 1208 190 15 94 chr1 39315480 39315811 -242877853 + AluJo SINE Alu 1 305 -7 246 175 32 0 chr1 39315813 39315876 -242877788 + L1MA10 LINE L1 6262 6326 -8 784 292 87 37 chr1 39316059 39316381 -242877283 - LTR16C LTR ERVL -2 489 152 252 349 36 0 chr1 39316538 39316621 -242877043 + MIR SINE MIR 13 98 -164 2275 85 7 0 chr1 39316622 39316928 -242876736 - AluSx SINE Alu -4 308 1 220 313 0 0 chr1 39316933 39316997 -242876667 + MIR SINE MIR 182 245 -17 250 275 0 14 chr1 39317037 39317106 -242876558 + MARNA DNA Mariner 342 409 -177 2113 103 0 7 chr1 39317267 39317568 -242876096 + AluSx SINE Alu 1 299 -13 2059 98 13 25 chr1 39317797 39318114 -242875550 + AluSq SINE Alu 1 313 0 3819 61 9 11 chr1 39318115 39318657 -242875007 + Harlequin LTR ERV1 1809 2349 -4547 1672 203 73 48 chr1 39318721 39319120 -242874544 + LTR2 LTR ERV1 41 449 0 3156 145 4 119 chr1 39319120 39319808 -242873856 + HERVE LTR ERV1 1 609 -7204 3976 184 54 36 chr1 39319827 39320929 -242872735 + HERVE LTR ERV1 732 4331 -3482 1826 224 58 6 chr1 39320929 39321277 -242872387 + HERV3 LTR ERV1 1722 2087 -6339 1663 278 39 2 chr1 39321402 39321808 -242871856 + HERV3 LTR ERV1 2049 2469 -5957 496 215 67 22 chr1 39321794 39321929 -242871735 + HERV3 LTR ERV1 3684 3824 -4602 * 5443 196 22 6 chr1 39321919 39323004 -242870660 + HERV3 LTR ERV1 5148 6313 -2113 1900 218 29 15 chr1 39323060 39323769 -242869895 + HERV3 LTR ERV1 7012 7811 -2 937 208 66 73 chr1 39323844 39324132 -242869532 + LTR2 LTR ERV1 44 329 -120 26 0 0 0 chr1 39325931 39325957 -242867707 + AT_rich Low_complexity Low_complexity 1 26 0 1026 164 89 14 chr1 39327206 39327420 -242866244 + AluJb SINE Alu 1 230 -82 2008 119 3 0 chr1 39327613 39327908 -242865756 - AluSq SINE Alu -17 296 1 2137 69 7 23 chr1 39327951 39328254 -242865410 - AluY SINE Alu -13 298 1 389 169 0 90 chr1 39329044 39329133 -242864531 + Tigger7 DNA MER2_type 2411 2491 0 329 167 56 56 chr1 39329375 39329447 -242864217 - AluSg/x SINE Alu -14 286 215 818 73 0 9 chr1 39329448 39329558 -242864106 - AluSq/x SINE Alu -203 109 1 1938 100 31 3 chr1 39329837 39330128 -242863536 - AluY SINE Alu -12 299 1 193 241 383 12 chr1 39330347 39330509 -242863155 + MIR SINE MIR 3 224 -38 3353 180 103 35 chr1 39331007 39331575 -242862089 + L1MB7 LINE L1 4477 5005 -1179 1629 171 42 0 chr1 39331575 39331861 -242861803 + AluJo SINE Alu 1 298 -14 3353 180 103 35 chr1 39331861 39331894 -242861770 + L1MB7 LINE L1 5005 5034 -1150 1643 111 87 4 chr1 39331894 39332146 -242861518 + AluSx SINE Alu 16 288 -24 3353 180 103 35 chr1 39332146 39332275 -242861389 + L1MB7 LINE L1 5034 5153 -1031 1819 128 25 0 chr1 39332275 39332549 -242861115 + AluSx SINE Alu 1 281 -31 3353 180 103 35 chr1 39332549 39332765 -242860899 + L1MB7 LINE L1 5153 5353 -831 1250 177 130 16 chr1 39332765 39333019 -242860645 + AluJb SINE Alu 2 284 -28 3353 180 103 35 chr1 39333019 39333355 -242860309 + L1MB7 LINE L1 5353 5665 -519 1933 124 31 0 chr1 39333355 39333645 -242860019 + AluSx SINE Alu 1 299 -13 3353 180 103 35 chr1 39333645 39333768 -242859896 + L1MB7 LINE L1 5665 6184 0 248 211 55 83 chr1 39333774 39333796 -242859868 - L2 LINE L2 -460 2854 2833 2139 105 3 7 chr1 39333796 39334092 -242859572 + AluSx SINE Alu 1 295 -17 248 211 55 83 chr1 39334092 39334178 -242859486 - L2 LINE L2 -481 2833 2749 196 271 129 29 chr1 39334189 39334259 -242859405 + L2 LINE L2 2604 2680 -634 369 180 114 32 chr1 39334269 39334478 -242859186 - MLT1H LTR MaLR -4 545 301 1913 132 10 3 chr1 39335034 39335330 -242858334 - AluJb SINE Alu -14 298 1 2298 97 0 0 chr1 39335331 39335639 -242858025 - AluSx SINE Alu -4 308 1 1668 117 63 10 chr1 39335784 39336084 -242857580 - L1MA8 LINE L1 -12 6279 5964 1184 162 10 0 chr1 39336198 39336395 -242857269 - L1MA8 LINE L1 -367 5924 5726 2058 108 3 0 chr1 39336595 39336882 -242856782 - AluSg SINE Alu -22 288 1 3355 138 0 100 chr1 39337120 39337361 -242856303 - L1MA7 LINE L1 -32 6259 5989 1983 115 0 63 chr1 39337361 39337692 -242855972 + AluSx SINE Alu 1 310 -2 3355 138 0 100 chr1 39337692 39337914 -242855750 - L1MA7 LINE L1 -302 5989 5740 1886 140 3 40 chr1 39337914 39338099 -242855565 - AluSx SINE Alu -2 310 141 2267 70 0 13 chr1 39338099 39338398 -242855266 - AluY SINE Alu -16 295 1 1886 140 3 40 chr1 39338398 39338534 -242855130 - AluSx SINE Alu -171 141 1 1949 137 3 3 chr1 39338538 39338838 -242854826 - AluSx SINE Alu -12 300 1 2281 100 0 3 chr1 39338843 39339154 -242854510 - AluY SINE Alu -1 310 1 3355 138 0 100 chr1 39339154 39339419 -242854245 - L1MA7 LINE L1 -558 5733 5473 1921 109 36 0 chr1 39339419 39339694 -242853970 - AluSc SINE Alu -8 301 17 3355 138 0 100 chr1 39339694 39339811 -242853853 - L1MA7 LINE L1 -818 5473 5343 603 214 0 0 chr1 39339804 39339921 -242853743 + L1 LINE L1 3801 3917 -2229 * 1565 173 10 26 chr1 39339951 39340264 -242853400 - AluSx SINE Alu -4 308 1 46 0 0 0 chr1 39340283 39340329 -242853335 + AT_rich Low_complexity Low_complexity 1 46 0 1029 77 0 53 chr1 39340329 39340499 -242853165 - L1PB2 LINE L1 -3 6148 5988 252 59 0 0 chr1 39340556 39340590 -242853074 + (CA)n Simple_repeat Simple_repeat 1 34 0 402 187 9 84 chr1 39340637 39340744 -242852920 - AluJo SINE Alu -95 217 119 2094 124 0 0 chr1 39340777 39341083 -242852581 - AluSq SINE Alu -7 306 1 51 65 0 0 chr1 39341083 39341176 -242852488 + AT_rich Low_complexity Low_complexity 1 93 0 2113 125 0 0 chr1 39341224 39341529 -242852135 - AluSx SINE Alu -7 305 1 556 312 148 65 chr1 39341541 39342053 -242851611 - L1MEc LINE L1 -5516 880 303 2021 123 10 10 chr1 39342053 39342355 -242851309 + AluSx SINE Alu 1 302 -10 556 312 148 65 chr1 39342355 39342477 -242851187 - L1MEc LINE L1 -6093 303 193 1726 177 30 71 chr1 39342563 39342899 -242850765 + MLT1B LTR MaLR 1 350 -40 2346 75 3 7 chr1 39342899 39343204 -242850460 - AluSq SINE Alu -9 304 1 2248 68 0 0 chr1 39343207 39343522 -242850142 - AluY SINE Alu 0 315 1 1726 177 30 71 chr1 39343522 39343587 -242850077 + MLT1B LTR MaLR 352 390 0 251 301 10 10 chr1 39343589 39343692 -242849972 - L1MEc LINE L1 -6255 141 39 431 189 25 33 chr1 39343794 39343916 -242849748 - L1MA10 LINE L1 -7 6327 6207 644 178 0 8 chr1 39343919 39344037 -242849627 - MER65A LTR ERV1 -20 425 309 1668 142 16 0 chr1 39344037 39344291 -242849373 + AluSx SINE Alu 1 258 -54 1979 136 27 0 chr1 39394503 39394804 -242798860 + AluSx SINE Alu 1 309 -3 2236 89 0 7 chr1 39396484 39396777 -242796887 + AluSq SINE Alu 1 291 -22 562 235 71 18 chr1 39396808 39396978 -242796686 + MER58C DNA MER1_type 32 210 -5 2224 130 0 0 chr1 39397110 39397417 -242796247 - AluSx SINE Alu 0 312 6 2240 170 40 7 chr1 39397556 39398009 -242795655 + L1MB2 LINE L1 5700 6167 -4 1614 172 28 7 chr1 39398044 39398334 -242795330 + AluSq SINE Alu 1 296 -17 329 216 57 0 chr1 39398355 39398443 -242795221 + L1ME LINE L1 3270 3362 -2784 234 200 33 17 chr1 39398533 39398593 -242795071 - MER3 DNA MER1_type -1 208 148 * 269 108 0 0 chr1 39398592 39398629 -242795035 - U2 snRNA snRNA -151 37 1 440 198 83 25 chr1 39398629 39398750 -242794914 - MER3 DNA MER1_type -60 149 22 1536 254 52 31 chr1 39398764 39399437 -242794227 + L1ME LINE L1 3394 4136 -2010 1958 132 0 0 chr1 39399437 39399710 -242793954 + AluSx SINE Alu 1 273 -39 1217 201 77 98 chr1 39399821 39400264 -242793400 + L1ME LINE L1 4738 5189 -973 204 97 0 0 chr1 39400264 39400295 -242793369 + (TGGA)n Simple_repeat Simple_repeat 3 33 0 1217 201 77 98 chr1 39400295 39400428 -242793236 + L1ME LINE L1 5189 5323 -839 1634 152 0 40 chr1 39400428 39400726 -242792938 + AluJb SINE Alu 16 302 0 1217 201 77 98 chr1 39400726 39400922 -242792742 + L1ME LINE L1 5323 5483 -679 1423 160 25 25 chr1 39400957 39401232 -242792432 + AluJo SINE Alu 24 298 -14 526 251 18 27 chr1 39401232 39401451 -242792213 + L1M4 LINE L1 3390 3606 -2540 23 0 0 0 chr1 39401870 39401893 -242791771 + AT_rich Low_complexity Low_complexity 1 23 0 225 0 0 0 chr1 39402245 39402270 -242791394 + (CA)n Simple_repeat Simple_repeat 2 26 0 2078 285 112 48 chr1 39402319 39403433 -242790231 + L2 LINE L2 1752 2936 -378 1799 172 19 13 chr1 39403712 39404020 -242789644 + AluJb SINE Alu 1 310 -2 700 258 152 40 chr1 39404075 39404289 -242789375 - L1MC4a LINE L1 -1926 5882 5619 2406 93 0 3 chr1 39404289 39404602 -242789062 + AluSx SINE Alu 1 312 0 700 258 152 40 chr1 39404602 39404709 -242788955 - L1MC4a LINE L1 -2189 5619 5525 476 145 0 13 chr1 39404712 39404788 -242788876 - MER58A DNA MER1_type 0 224 150 2220 77 6 49 chr1 39404866 39405191 -242788473 - AluY SINE Alu 0 311 1 1603 174 67 0 chr1 39405790 39406060 -242787604 + AluSx SINE Alu 1 288 -24 302 279 54 48 chr1 39406278 39406425 -242787239 - L1MC4 LINE L1 -803 7239 7092 418 342 0 9 chr1 39406493 39406607 -242787057 + L2 LINE L2 3160 3272 0 193 324 14 14 chr1 39406618 39406689 -242786975 - L2 LINE L2 -557 2757 2687 1681 158 10 48 chr1 39406741 39407032 -242786632 - AluJo SINE Alu -30 282 3 231 227 187 0 chr1 39407057 39407132 -242786532 - MLT1K LTR MaLR 0 588 500 192 323 48 0 chr1 39408220 39408282 -242785382 + MIR3 SINE MIR 8 72 -136 254 323 126 36 chr1 39408299 39408522 -242785142 - MIR SINE MIR 0 262 20 36 23 0 0 chr1 39409671 39409714 -242783950 + AT_rich Low_complexity Low_complexity 1 43 0 228 387 99 7 chr1 39410078 39410220 -242783444 + L2 LINE L2 3102 3256 -16 28 0 0 0 chr1 39410779 39410807 -242782857 + AT_rich Low_complexity Low_complexity 1 28 0 1597 157 42 54 chr1 39412535 39412733 -242780931 - AluJb SINE Alu -1 311 117 1809 139 7 4 chr1 39412733 39413007 -242780657 + AluSx SINE Alu 1 275 -37 1597 157 42 54 chr1 39413007 39413121 -242780543 - AluJb SINE Alu -195 117 3 865 175 19 25 chr1 39413153 39413313 -242780351 - MER20 DNA MER1_type 0 219 61 230 354 37 43 chr1 39414903 39415067 -242778597 - MIR SINE MIR -42 220 58 216 0 0 0 chr1 39415080 39415104 -242778560 + (T)n Simple_repeat Simple_repeat 1 24 0 2052 122 0 39 chr1 39416570 39416882 -242776782 + AluSq SINE Alu 1 300 -13 2083 110 0 36 chr1 39417061 39417369 -242776295 - AluSp SINE Alu -16 297 1 2020 111 39 0 chr1 39417539 39417818 -242775846 + AluSx SINE Alu 5 294 -18 1043 163 8 119 chr1 39417862 39418114 -242775550 + MER58A DNA MER1_type 1 224 0 440 275 59 45 chr1 39418408 39418630 -242775034 + L1ME4a LINE L1 5523 5747 -374 1143 152 33 5 chr1 39418667 39418877 -242774787 - MER96B DNA MER1_type? -201 216 1 424 254 139 24 chr1 39419281 39419568 -242774096 + L1ME4a LINE L1 5791 6110 -11 31 58 0 0 chr1 39419578 39419630 -242774034 + AT_rich Low_complexity Low_complexity 1 52 0 207 196 0 0 chr1 39419815 39419861 -242773803 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 279 93 0 0 chr1 39420165 39420208 -242773456 + (T)n Simple_repeat Simple_repeat 1 43 0 216 0 0 0 chr1 39420568 39420592 -242773072 + (T)n Simple_repeat Simple_repeat 1 24 0 405 0 0 0 chr1 39420905 39420950 -242772714 + (TG)n Simple_repeat Simple_repeat 1 45 0 2246 75 0 3 chr1 39420955 39421258 -242772406 - AluY SINE Alu 0 302 1 497 319 57 27 chr1 39421828 39422163 -242771501 - MARNA DNA Mariner -156 430 86 780 162 108 3 chr1 39422214 39422442 -242771222 + L1MA8 LINE L1 5989 6223 -68 1281 145 39 30 chr1 39422463 39422697 -242770967 - MER46A DNA MER2_type 0 236 1 1993 149 0 3 chr1 39422718 39423019 -242770645 + AluSx SINE Alu 1 300 -12 234 105 0 0 chr1 39423059 39423097 -242770567 + (TA)n Simple_repeat Simple_repeat 1 38 0 2089 86 0 64 chr1 39423264 39423590 -242770074 - AluY SINE Alu -6 305 1 1078 113 0 0 chr1 39423592 39423734 -242769930 - AluY SINE Alu -169 142 1 2516 73 0 10 chr1 39423917 39424230 -242769434 - AluSp SINE Alu -2 311 2 726 155 0 9 chr1 39424416 39424532 -242769132 + FLAM_A SINE Alu 1 115 -18 1768 195 0 0 chr1 39425690 39425988 -242767676 + AluJo SINE Alu 1 298 -14 2309 84 0 14 chr1 39426426 39426722 -242766942 - AluSc SINE Alu -17 292 1 2320 90 0 0 chr1 39426815 39427103 -242766561 - AluSx SINE Alu -24 288 1 11290 132 89 73 chr1 39427375 39428989 -242764675 - Tigger1 DNA MER2_type -1 2417 830 2103 122 0 3 chr1 39428989 39429293 -242764371 - AluSc SINE Alu -6 303 1 932 102 0 7 chr1 39429293 39429430 -242764234 - AluSq/x SINE Alu -176 136 1 11290 132 89 73 chr1 39429430 39430035 -242763629 - Tigger1 DNA MER2_type -1587 831 24 2221 82 4 0 chr1 39430193 39430517 -242763147 - AluY SINE Alu 0 325 1 344 225 78 8 chr1 39430777 39430906 -242762758 - L1ME4a LINE L1 -15 6106 5969 237 292 56 0 chr1 39430915 39430987 -242762677 - MIR SINE MIR -76 186 111 2299 110 0 10 chr1 39431754 39432063 -242761601 + AluSx SINE Alu 1 306 -6 990 209 67 0 chr1 39432097 39432307 -242761357 + MER58A DNA MER1_type 1 224 0 683 182 92 152 chr1 39432308 39432406 -242761258 + LTR37B LTR ERV1 114 216 -252 589 35 12 12 chr1 39432406 39432491 -242761173 + (TA)n Simple_repeat Simple_repeat 2 86 0 683 182 92 152 chr1 39432491 39432531 -242761133 + LTR37B LTR ERV1 216 257 -211 1663 201 7 7 chr1 39432531 39432835 -242760829 + AluJo SINE Alu 1 304 -8 683 182 92 152 chr1 39432835 39433064 -242760600 + LTR37B LTR ERV1 257 460 -8 388 293 94 33 chr1 39433115 39433296 -242760368 - L3 LINE CR1 -3 1574 1383 185 321 54 0 chr1 39433505 39433561 -242760103 - L2 LINE L2 -10 3262 3204 5548 179 16 37 chr1 39433584 39434227 -242759437 + L1P LINE L1 2154 2760 -3386 2262 113 3 0 chr1 39434227 39434528 -242759136 + AluSq SINE Alu 1 302 -11 5548 179 16 37 chr1 39434528 39435156 -242758508 + L1P LINE L1 2760 3399 -2747 608 257 129 7 chr1 39435420 39435537 -242758127 + MER58B DNA MER1_type 27 128 -2292 1933 132 7 20 chr1 39435537 39435841 -242757823 + AluJb SINE Alu 1 300 -12 608 257 129 7 chr1 39435841 39436003 -242757661 + MER58B DNA MER1_type 128 340 -1 279 239 109 33 chr1 39436703 39436795 -242756869 - MER5B DNA MER1_type -78 100 2 303 28 0 0 chr1 39437631 39437667 -242755997 + (CA)n Simple_repeat Simple_repeat 2 37 0 420 158 0 0 chr1 39437668 39437744 -242755920 + (TA)n Simple_repeat Simple_repeat 1 76 0 2007 102 27 20 chr1 39437909 39438202 -242755462 - AluSx SINE Alu -17 295 1 336 21 0 0 chr1 39438698 39438745 -242754919 - L1MA3 LINE L1 0 6305 6259 24 0 0 0 chr1 39438750 39438774 -242754890 + AT_rich Low_complexity Low_complexity 1 24 0 324 339 21 24 chr1 39439229 39439461 -242754203 + MIR SINE MIR 12 243 -19 520 259 14 97 chr1 39440204 39440283 -242753381 - MER112 DNA MER1_type -5 255 171 1981 121 9 19 chr1 39440283 39440598 -242753066 - AluSx SINE Alu 0 312 1 520 259 14 97 chr1 39440598 39440796 -242752868 - MER112 DNA MER1_type -89 171 1 1911 133 149 8 chr1 39441690 39442065 -242751599 - MSTA LTR MaLR 0 428 1 323 289 62 0 chr1 39442314 39442411 -242751253 + L2 LINE L2 3199 3301 -12 364 165 68 29 chr1 39443568 39443650 -242750014 + MER112 DNA MER1_type 5 93 -167 2352 104 0 0 chr1 39443650 39443959 -242749705 - AluSx SINE Alu -3 309 1 364 165 68 29 chr1 39443959 39443979 -242749685 + MER112 DNA MER1_type 93 111 -149 196 30 61 0 chr1 39444032 39444065 -242749599 + A-rich Low_complexity Low_complexity 3 37 0 832 112 15 22 chr1 39444156 39444290 -242749374 - FLAM_C SINE Alu 0 133 1 27 62 0 0 chr1 39444756 39444804 -242748860 + AT_rich Low_complexity Low_complexity 1 48 0 2485 64 0 3 chr1 39444927 39445224 -242748440 + AluY SINE Alu 1 296 -15 243 0 0 0 chr1 39445236 39445263 -242748401 + (TG)n Simple_repeat Simple_repeat 2 28 0 2511 79 127 5 chr1 39445726 39446119 -242747545 - LTR7 LTR ERV1 -9 441 1 608 259 0 18 chr1 39446340 39446510 -242747154 + FRAM SINE Alu 1 167 -9 1656 139 170 16 chr1 39446515 39446838 -242746826 - MER83B LTR ERV1 0 378 6 2299 100 3 3 chr1 39447219 39447520 -242746144 + AluSg SINE Alu 5 305 -5 21 36 0 0 chr1 39448971 39448999 -242744665 + AT_rich Low_complexity Low_complexity 1 28 0 227 359 0 0 chr1 39449259 39449351 -242744313 - MIR SINE MIR -17 245 154 3344 195 95 54 chr1 39449509 39450274 -242743390 - L1M4b LINE L1 -6052 807 11 871 112 16 8 chr1 39450285 39450410 -242743254 + FLAM_C SINE Alu 1 126 -17 350 239 0 0 chr1 39450551 39450622 -242743042 - MER5A DNA MER1_type -104 85 15 808 161 0 8 chr1 39450768 39450898 -242742766 + FLAM_C SINE Alu 1 129 -4 1407 172 192 13 chr1 39451038 39451346 -242742318 - MER47A DNA MER2_type -3 363 1 526 293 67 29 chr1 39453427 39453666 -242739998 - MIR SINE MIR 0 262 15 1866 92 4 8 chr1 39455348 39455652 -242738012 + AluY SINE Alu 33 335 0 3920 146 34 9 chr1 39455659 39455819 -242737845 + L1MB5 LINE L1 5172 5327 -847 1412 140 184 82 chr1 39455819 39456148 -242737516 + MSTB1 LTR MaLR 1 378 -54 2482 81 0 0 chr1 39456148 39456445 -242737219 - AluSg SINE Alu -13 297 1 1412 140 184 82 chr1 39456445 39456507 -242737157 + MSTB1 LTR MaLR 378 432 0 3920 146 34 9 chr1 39456507 39457162 -242736502 + L1MB5 LINE L1 5327 5996 -178 288 0 0 0 chr1 39457330 39457362 -242736302 + (TG)n Simple_repeat Simple_repeat 2 33 0 313 252 197 37 chr1 39457611 39457829 -242735835 - L1M4 LINE L1 -2922 3224 2972 1621 247 170 9 chr1 39458171 39458713 -242734951 - L1MC4 LINE L1 -953 7089 6461 2185 110 0 10 chr1 39459127 39459427 -242734237 - AluSg SINE Alu -13 297 1 619 53 0 0 chr1 39459435 39459510 -242734154 - HY5 scRNA scRNA -8 76 2 1903 139 0 23 chr1 39459853 39460154 -242733510 - AluJo SINE Alu -18 294 1 265 261 144 31 chr1 39460272 39460529 -242733135 - HAL1 LINE L1 -1022 1485 1200 2338 93 0 7 chr1 39460691 39460993 -242732671 + AluSx SINE Alu 1 300 -12 2713 26 3 0 chr1 39461563 39461865 -242731799 - AluY SINE Alu -8 303 1 2044 96 30 0 chr1 39463435 39463705 -242729959 + AluSx SINE Alu 21 298 -14 493 133 26 53 chr1 39464295 39464408 -242729256 + MER5A DNA MER1_type 1 110 -79 196 196 245 20 chr1 39464454 39464556 -242729108 + MIR SINE MIR 17 141 -67 2400 78 7 13 chr1 39465697 39466004 -242727660 - AluSg SINE Alu -5 305 1 212 159 0 48 chr1 39468257 39468320 -242725344 + A-rich Low_complexity Low_complexity 2 61 0 234 336 84 0 chr1 39469591 39469722 -242723942 + L2 LINE L2 2566 2707 -607 216 340 70 19 chr1 39469845 39470060 -242723604 + L2 LINE L2 2339 2564 -750 1049 121 67 6 chr1 39470133 39470298 -242723366 - AluSq SINE Alu -4 309 135 1833 164 0 3 chr1 39470327 39470457 -242723207 + AluJb SINE Alu 1 130 -182 180 0 0 0 chr1 39470457 39470477 -242723187 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1833 164 0 3 chr1 39470477 39470632 -242723032 + AluJb SINE Alu 130 285 -27 374 293 251 14 chr1 39470796 39471083 -242722581 + L2 LINE L2 2886 3240 -32 965 159 0 7 chr1 39471266 39471411 -242722253 + FRAM SINE Alu 1 144 -32 313 261 57 0 chr1 39473170 39473258 -242720406 + MIR SINE MIR 54 146 -116 22 56 0 0 chr1 39473320 39473356 -242720308 + AT_rich Low_complexity Low_complexity 1 36 0 2148 123 0 3 chr1 39475007 39475325 -242718339 + AluSx SINE Alu 1 317 0 1420 171 72 31 chr1 39475325 39475617 -242718047 - Charlie4a DNA MER1_type -202 306 3 747 226 64 43 chr1 39475973 39476208 -242717456 - MIR SINE MIR -3 259 20 242 372 21 11 chr1 39476985 39477176 -242716488 + L2 LINE L2 2174 2366 -948 509 275 161 0 chr1 39477176 39477387 -242716277 - MIR SINE MIR -17 245 1 544 295 18 12 chr1 39477675 39477841 -242715823 + MER5B DNA MER1_type 12 178 0 301 339 180 25 chr1 39478044 39478859 -242714805 + L2 LINE L2 1764 2705 -609 1441 153 9 0 chr1 39479182 39479404 -242714260 - AluJo SINE Alu -3 309 86 277 161 92 35 chr1 39481195 39481282 -242712382 + MIR SINE MIR 58 149 -59 251 229 33 66 chr1 39481802 39481863 -242711801 + MIR SINE MIR 65 124 -84 252 342 0 0 chr1 39482979 39483058 -242710606 + G-rich Low_complexity Low_complexity 3 81 0 306 0 0 0 chr1 39484441 39484475 -242709189 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 402 51 153 0 chr1 39485645 39485704 -242707960 - MADE1 DNA Mariner 0 80 13 697 295 181 0 chr1 39486742 39486996 -242706668 + MER102b DNA MER1_type 11 310 -31 186 309 283 13 chr1 39487002 39487154 -242706510 - L3 LINE CR1 -105 1472 1280 2612 66 0 0 chr1 39487189 39487494 -242706170 - AluSg SINE Alu -5 305 1 592 208 163 55 chr1 39488010 39488145 -242705519 - MIR SINE MIR -6 256 137 2166 119 3 0 chr1 39488145 39488440 -242705224 + AluSx SINE Alu 1 296 -16 915 112 0 0 chr1 39488440 39488583 -242705081 + (GGAA)n Simple_repeat Simple_repeat 3 145 0 592 208 163 55 chr1 39488583 39488648 -242705016 - MIR SINE MIR -124 138 33 341 317 165 0 chr1 39488683 39488847 -242704817 - MIR SINE MIR -44 218 28 246 105 0 0 chr1 39489108 39489146 -242704518 + (A)n Simple_repeat Simple_repeat 1 38 0 2516 62 0 3 chr1 39489543 39489848 -242703816 - AluY SINE Alu -7 304 1 4915 207 79 63 chr1 39489969 39491679 -242701985 - L1ME1 LINE L1 -14 6152 4471 1901 171 0 10 chr1 39491679 39491977 -242701687 + AluJb SINE Alu 3 297 -15 4915 207 79 63 chr1 39491977 39492625 -242701039 - L1ME1 LINE L1 -1695 4471 3731 2195 128 0 0 chr1 39492625 39492929 -242700735 - AluSx SINE Alu -8 304 1 4915 207 79 63 chr1 39492929 39493302 -242700362 - L1ME1 LINE L1 -2435 3731 3365 476 121 0 0 chr1 39493310 39493376 -242700288 - AluJ/FLAM SINE Alu -245 67 2 856 232 138 24 chr1 39493382 39493406 -242700258 - L1ME1 LINE L1 -3033 3113 3093 1761 178 13 3 chr1 39493406 39493704 -242699960 - AluJo SINE Alu -11 301 1 856 232 138 24 chr1 39493704 39494049 -242699615 - L1ME1 LINE L1 -3053 3093 2702 217 244 0 0 chr1 39494191 39494232 -242699432 + MIR3 SINE MIR 147 187 -21 29 47 0 0 chr1 39494864 39494907 -242698757 + AT_rich Low_complexity Low_complexity 1 43 0 985 169 6 12 chr1 39495715 39495887 -242697777 + FRAM SINE Alu 1 171 -5 239 320 100 20 chr1 39495983 39496083 -242697581 - L2 LINE L2 0 3272 3165 345 243 54 61 chr1 39496449 39496493 -242697171 + MER103 DNA DNA 2 45 -121 2272 108 19 0 chr1 39496493 39496800 -242696864 + AluSp SINE Alu 1 313 0 345 243 54 61 chr1 39496800 39496903 -242696761 + MER103 DNA DNA 45 148 -18 204 328 151 8 chr1 39497177 39497296 -242696368 + L2 LINE L2 3137 3272 0 454 287 80 69 chr1 39497495 39497797 -242695867 + L1ME4a LINE L1 5581 5889 -232 1626 176 42 3 chr1 39497797 39498086 -242695578 + AluJo SINE Alu 1 300 -12 454 287 80 69 chr1 39498086 39498145 -242695519 + L1ME4a LINE L1 5889 5946 -175 * 4631 188 34 49 chr1 39498123 39498939 -242694725 - L1MB5 LINE L1 -13 6161 5334 1546 140 184 82 chr1 39498939 39499001 -242694663 - MSTB1 LTR MaLR 0 432 378 2459 81 0 0 chr1 39499001 39499298 -242694366 + AluSg SINE Alu 1 297 -13 1546 140 184 82 chr1 39499298 39499627 -242694037 - MSTB1 LTR MaLR -54 378 1 4631 188 34 49 chr1 39499627 39499794 -242693870 - L1MB5 LINE L1 -840 5334 5166 1971 102 3 11 chr1 39499794 39500131 -242693533 - AluY SINE Alu 0 335 1 4631 188 34 49 chr1 39500131 39500558 -242693106 - L1MB5 LINE L1 -1008 5166 4734 2021 50 0 8 chr1 39500558 39500796 -242692868 - AluY SINE Alu -75 236 1 4631 188 34 49 chr1 39500796 39501219 -242692445 - L1MB5 LINE L1 -1440 4734 4376 2084 58 43 33 chr1 39501219 39501519 -242692145 - AluY SINE Alu 0 304 2 4631 188 34 49 chr1 39501519 39501862 -242691802 - L1MB5 LINE L1 -1798 4376 4029 1558 185 4 11 chr1 39502402 39502662 -242691002 - AluJo SINE Alu -30 282 25 1015 253 93 3 chr1 39503950 39504099 -242689565 + MER58B DNA MER1_type 1 135 -2285 2013 125 3 20 chr1 39504099 39504404 -242689260 + AluJb SINE Alu 1 300 -12 1015 253 93 3 chr1 39504404 39504566 -242689098 + MER58B DNA MER1_type 135 340 -1 267 239 109 33 chr1 39505266 39505358 -242688306 - MER5B DNA MER1_type -78 100 2 21 0 0 0 chr1 39505643 39505664 -242688000 + AT_rich Low_complexity Low_complexity 1 21 0 2263 102 0 0 chr1 39505894 39506200 -242687464 - AluSx SINE Alu 0 306 1 1048 184 0 12 chr1 39506427 39506595 -242687069 + FRAM SINE Alu 1 166 0 812 172 0 62 chr1 39506903 39507048 -242686616 + FRAM SINE Alu 11 146 -30 2185 92 14 7 chr1 39507064 39507358 -242686306 + AluSq SINE Alu 1 296 -17 315 269 144 19 chr1 39507552 39507656 -242686008 + L2 LINE L2 3194 3310 -3 414 52 0 143 chr1 39508652 39508729 -242684935 + MADE1 DNA Mariner 1 66 -14 436 241 58 92 chr1 39511970 39512077 -242681587 + MIR SINE MIR 8 109 -153 2393 54 4 0 chr1 39512077 39512388 -242681276 + AluY SINE Alu 1 312 0 436 241 58 92 chr1 39512388 39512453 -242681211 + MIR SINE MIR 109 175 -87 184 143 0 95 chr1 39512451 39512493 -242681171 + L2 LINE L2 3264 3301 -12 * 2076 129 7 7 chr1 39512736 39513038 -242680626 + AluSx SINE Alu 1 302 -10 34 24 0 0 chr1 39513252 39513293 -242680371 + AT_rich Low_complexity Low_complexity 1 41 0 189 158 0 0 chr1 39514196 39514234 -242679430 - L2 LINE L2 0 3313 3276 2010 149 10 0 chr1 39514319 39514615 -242679049 + AluJb SINE Alu 1 299 -13 23 0 0 0 chr1 39514730 39514753 -242678911 + AT_rich Low_complexity Low_complexity 1 23 0 388 327 136 16 chr1 39514757 39515185 -242678479 - L2 LINE L2 -225 3047 2565 2123 121 0 13 chr1 39515204 39515502 -242678162 + AluSx SINE Alu 1 294 -18 2999 218 75 29 chr1 39515511 39516311 -242677353 - L1ME1 LINE L1 -9 6157 5321 730 195 31 0 chr1 39516315 39516474 -242677190 - L1MA10 LINE L1 -2 6332 6169 2358 71 3 10 chr1 39516519 39516830 -242676834 - AluY SINE Alu -2 309 1 1999 125 14 7 chr1 39516830 39517124 -242676540 - AluSx SINE Alu -15 297 1 414 276 60 0 chr1 39517129 39517263 -242676401 - L1MC/D LINE L1 -2032 5776 5635 226 260 20 0 chr1 39517392 39517442 -242676222 + L2 LINE L2 3263 3313 0 1407 182 4 32 chr1 39517530 39517783 -242675881 + AluJo SINE Alu 49 294 -18 2438 94 10 0 chr1 39517785 39518092 -242675572 + AluSg SINE Alu 1 310 0 186 338 0 0 chr1 39518286 39518363 -242675301 - L2 LINE L2 -2234 1080 1004 22 35 0 0 chr1 39518854 39518883 -242674781 + AT_rich Low_complexity Low_complexity 1 29 0 438 77 333 0 chr1 39519186 39519264 -242674400 - AluSc SINE Alu -11 298 195 3514 208 36 67 chr1 39519583 39519890 -242673774 + L1M4 LINE L1 4071 4386 -1760 2031 62 47 33 chr1 39519890 39520189 -242673475 + AluY SINE Alu 2 304 0 3514 208 36 67 chr1 39520189 39520609 -242673055 + L1M4 LINE L1 4386 4756 -1390 2021 50 0 8 chr1 39520609 39520847 -242672817 + AluY SINE Alu 1 236 -75 3514 208 36 67 chr1 39520847 39521211 -242672453 + L1M4 LINE L1 4756 5130 -1016 200 118 29 0 chr1 39521212 39521246 -242672418 + A-rich Low_complexity Low_complexity 5 39 0 2127 92 0 10 chr1 39521274 39521591 -242672073 + AluY SINE Alu 1 314 0 2092 103 10 30 chr1 39521759 39522059 -242671605 - AluSg SINE Alu -16 294 1 3035 230 38 28 chr1 39522059 39522368 -242671296 - L1ME1 LINE L1 -204 6460 6156 2487 70 3 0 chr1 39522368 39522666 -242670998 - AluSp SINE Alu -14 299 1 3035 230 38 28 chr1 39522666 39523645 -242670019 - L1ME1 LINE L1 -508 6156 5164 1655 183 71 53 chr1 39523663 39524082 -242669582 - MLT1C LTR MaLR 0 467 31 1483 206 40 30 chr1 39524103 39524232 -242669432 - L1ME1 LINE L1 -1644 5000 4874 765 191 24 8 chr1 39524232 39524358 -242669306 + FLAM_A SINE Alu 1 128 -5 1483 206 40 30 chr1 39524358 39524631 -242669033 - L1ME1 LINE L1 -1770 4874 4594 234 0 0 0 chr1 39524705 39524731 -242668933 + (TA)n Simple_repeat Simple_repeat 2 27 0 1792 15 0 0 chr1 39524739 39524940 -242668724 - L1HS LINE L1 0 6155 5955 653 272 96 33 chr1 39524936 39525208 -242668456 - L1ME1 LINE L1 -5342 1204 916 * 284 278 80 46 chr1 39525289 39525440 -242668224 - L1ME1 LINE L1 -5671 871 716 249 323 97 16 chr1 39525426 39525550 -242668114 - L1ME LINE L1 -5605 465 332 * 692 153 15 58 chr1 39525738 39525875 -242667789 - FLAM_A SINE Alu -2 131 1 1646 143 77 14 chr1 39526048 39526335 -242667329 + AluJb SINE Alu 5 309 -3 836 261 64 45 chr1 39526478 39526552 -242667112 - L1ME LINE L1 -5219 851 780 1526 178 19 54 chr1 39526552 39526867 -242666797 + AluJo SINE Alu 1 304 -8 836 261 64 45 chr1 39526867 39527198 -242666466 - L1ME LINE L1 -5290 780 431 1939 125 38 10 chr1 39527198 39527486 -242666178 - AluSx SINE Alu -16 296 1 836 261 64 45 chr1 39527486 39527653 -242666011 - L1ME LINE L1 -5639 431 269 630 310 63 49 chr1 39527795 39528240 -242665424 - L1ME LINE L1 -5610 460 10 515 319 114 34 chr1 39528250 39528947 -242664717 - L2 LINE L2 -774 2540 1715 1164 271 124 15 chr1 39529169 39529579 -242664085 + L1MC4a LINE L1 22 476 -5920 2246 115 3 10 chr1 39529592 39529906 -242663758 - AluSx SINE Alu 0 312 1 999 143 200 0 chr1 39529906 39530081 -242663583 - AluJb SINE Alu -17 295 86 2836 250 76 28 chr1 39530096 39530660 -242663004 + L1MC4a LINE L1 489 1024 -5372 2380 119 143 11 chr1 39530660 39531038 -242662626 + MSTA LTR MaLR 1 428 0 2836 250 76 28 chr1 39531038 39531554 -242662110 + L1MC4a LINE L1 1024 1621 -4775 2987 188 77 136 chr1 39531571 39532174 -242661490 + L1MC4a LINE L1 3198 3835 -2380 2258 102 0 0 chr1 39532174 39532492 -242661172 + AluSg SINE Alu 1 318 0 2987 188 77 136 chr1 39532492 39532818 -242660846 + L1MC4a LINE L1 3835 4162 -2053 761 200 0 0 chr1 39532818 39532948 -242660716 + FLAM_C SINE Alu 2 131 -12 2987 188 77 136 chr1 39532948 39533252 -242660412 + L1MC4a LINE L1 4162 4482 -1733 1521 159 33 0 chr1 39533534 39533779 -242659885 + AluJb SINE Alu 25 277 -35 216 0 0 0 chr1 39533782 39533806 -242659858 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 2308 69 35 3 chr1 39533968 39534258 -242659406 + AluY SINE Alu 1 299 -12 1330 266 91 59 chr1 39535331 39535828 -242657836 + L1MC4a LINE L1 5421 5944 -1933 2344 97 3 0 chr1 39535828 39536126 -242657538 + AluSp SINE Alu 1 299 -14 1330 266 91 59 chr1 39536126 39536268 -242657396 + L1MC4a LINE L1 5944 6080 -1797 240 59 0 0 chr1 39536617 39536651 -242657013 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2318 118 6 59 chr1 39537454 39537810 -242655854 - MER1B DNA MER1_type 0 337 1 2496 128 11 19 chr1 39538380 39538747 -242654917 + THE1B LTR MaLR 1 364 0 12562 90 6 2 chr1 39538747 39540321 -242653343 + THE1B-int LTR MaLR 1 1580 0 2531 99 29 56 chr1 39540321 39540695 -242652969 + THE1B LTR MaLR 1 364 0 1517 151 13 0 chr1 39541476 39541708 -242651956 + AluJb SINE Alu 21 255 -57 23 54 0 0 chr1 39541974 39542011 -242651653 + AT_rich Low_complexity Low_complexity 1 37 0 384 271 85 34 chr1 39542115 39542233 -242651431 - L2 LINE L2 -2 3270 3147 2144 122 3 3 chr1 39542336 39542632 -242651032 - AluSx SINE Alu -16 296 1 361 257 30 21 chr1 39542651 39542822 -242650842 - L1ME LINE L1 -303 5818 5646 1131 300 111 24 chr1 39542839 39543433 -242650231 + L2 LINE L2 1948 2593 -721 590 322 64 13 chr1 39543438 39543671 -242649993 + MIR SINE MIR 6 250 -12 1489 152 0 0 chr1 39543672 39543889 -242649775 - AluJb SINE Alu -12 300 84 425 354 148 18 chr1 39543922 39544487 -242649177 + L2 LINE L2 2586 3270 -2 1596 193 3 17 chr1 39544520 39544816 -242648848 - AluJo SINE Alu -20 292 1 2184 151 0 0 chr1 39544854 39545165 -242648499 + AluJb SINE Alu 1 311 -1 2106 119 7 11 chr1 39546953 39547238 -242646426 - AluSx SINE Alu -28 284 1 2182 95 27 7 chr1 39547430 39547724 -242645940 - AluSx SINE Alu -12 300 1 2353 115 0 6 chr1 39547727 39548041 -242645623 - AluSx SINE Alu 0 312 1 714 318 60 0 chr1 39548843 39549076 -242644588 + MIR SINE MIR 1 247 -15 221 273 103 39 chr1 39549092 39549194 -242644470 - MIR SINE MIR -65 143 54 744 183 0 23 chr1 39549288 39549419 -242644245 + FLAM_A SINE Alu 1 128 -5 266 295 133 50 chr1 39549588 39549890 -242643774 + L2 LINE L2 1734 2060 -1254 1176 141 0 0 chr1 39550121 39550284 -242643380 - FRAM SINE Alu -14 162 1 225 327 118 45 chr1 39550478 39550698 -242642966 + L2 LINE L2 2831 3066 -206 759 195 49 24 chr1 39550798 39550962 -242642702 - MER20 DNA MER1_type 0 219 52 7089 93 6 23 chr1 39551643 39552029 -242641635 + L1MA2 LINE L1 5062 5453 -851 2636 46 0 0 chr1 39552029 39552332 -242641332 + AluY SINE Alu 1 303 -8 7089 93 6 23 chr1 39552332 39553211 -242640453 + L1MA2 LINE L1 5453 6304 0 29 0 0 0 chr1 39553212 39553241 -242640423 + AT_rich Low_complexity Low_complexity 1 29 0 192 158 0 0 chr1 39554144 39554182 -242639482 - L2 LINE L2 0 3313 3276 2007 152 10 0 chr1 39554267 39554563 -242639101 + AluJb SINE Alu 1 299 -13 225 0 0 0 chr1 39554591 39554616 -242639048 + (A)n Simple_repeat Simple_repeat 1 25 0 23 0 0 0 chr1 39554676 39554699 -242638965 + AT_rich Low_complexity Low_complexity 1 23 0 413 318 157 19 chr1 39554703 39555124 -242638540 - L2 LINE L2 -225 3047 2565 2132 121 0 13 chr1 39555143 39555441 -242638223 + AluSx SINE Alu 1 294 -18 2672 220 77 16 chr1 39555450 39556218 -242637446 - L1ME1 LINE L1 -9 6157 5343 2707 231 39 28 chr1 39556264 39556458 -242637206 - L1ME1 LINE L1 -5 6659 6469 2697 45 0 0 chr1 39556458 39556767 -242636897 - AluY SINE Alu -2 309 1 2707 231 39 28 chr1 39556767 39557074 -242636590 - L1ME1 LINE L1 -195 6469 6167 2479 70 3 0 chr1 39557074 39557372 -242636292 - AluSp SINE Alu -14 299 1 2707 231 39 28 chr1 39557372 39558351 -242635313 - L1ME1 LINE L1 -497 6167 5164 1485 182 71 54 chr1 39558369 39558788 -242634876 - MLT1C LTR MaLR 0 467 31 1315 208 38 35 chr1 39558817 39558938 -242634726 - L1ME1 LINE L1 -1655 4989 4870 717 191 24 8 chr1 39558938 39559064 -242634600 + FLAM_A SINE Alu 1 128 -5 1315 208 38 35 chr1 39559064 39559337 -242634327 - L1ME1 LINE L1 -1774 4870 4594 360 0 0 0 chr1 39559411 39559451 -242634213 + (TA)n Simple_repeat Simple_repeat 2 41 0 1659 0 0 0 chr1 39559451 39559644 -242634020 - L1HS LINE L1 -3 6152 5960 608 255 21 27 chr1 39559645 39559833 -242633831 - L1ME1 LINE L1 -5342 1204 1018 356 314 76 50 chr1 39559870 39560334 -242633330 - L1ME1 LINE L1 -5539 1095 716 641 153 15 58 chr1 39560447 39560584 -242633080 - FLAM_A SINE Alu -2 131 1 1670 146 76 14 chr1 39560757 39561045 -242632619 + AluJb SINE Alu 5 310 -2 744 259 53 45 chr1 39561188 39561262 -242632402 - L1ME LINE L1 -5219 851 779 1589 182 19 32 chr1 39561262 39561570 -242632094 + AluJo SINE Alu 1 304 -8 744 259 53 45 chr1 39561570 39561901 -242631763 - L1ME LINE L1 -5291 779 445 1948 125 38 10 chr1 39561901 39562189 -242631475 - AluSx SINE Alu -16 296 1 744 259 53 45 chr1 39562189 39562316 -242631348 - L1ME LINE L1 -5625 445 320 497 312 63 49 chr1 39562498 39562943 -242630721 - L1ME LINE L1 -5610 460 10 540 316 113 32 chr1 39562953 39563650 -242630014 - L2 LINE L2 -774 2540 1715 1028 281 122 12 chr1 39563872 39564282 -242629382 + L1ME1 LINE L1 22 476 -5920 2254 115 3 10 chr1 39564295 39564609 -242629055 - AluSx SINE Alu 0 312 1 1003 143 200 0 chr1 39564609 39564784 -242628880 - AluJb SINE Alu -17 295 86 2456 250 76 28 chr1 39564799 39565363 -242628301 + L1ME1 LINE L1 489 1024 -5372 2197 119 143 11 chr1 39565363 39565741 -242627923 + MSTA LTR MaLR 1 428 0 2456 250 76 28 chr1 39565741 39566257 -242627407 + L1ME1 LINE L1 1024 1621 -4775 3135 172 67 199 chr1 39566277 39566877 -242626787 + L1ME1 LINE L1 3201 3879 -2336 2269 99 0 0 chr1 39566877 39567195 -242626469 + AluSg SINE Alu 1 318 0 3135 172 67 199 chr1 39567195 39567520 -242626144 + L1ME1 LINE L1 3879 4245 -1970 711 199 0 0 chr1 39567520 39567651 -242626013 + FLAM_C SINE Alu 1 131 -12 3135 172 67 199 chr1 39567651 39568236 -242625428 + L1ME1 LINE L1 4245 4906 -1309 1557 163 32 0 chr1 39568236 39568515 -242625149 + AluJb SINE Alu 23 309 0 3135 172 67 199 chr1 39568515 39568810 -242624854 + L1ME1 LINE L1 4906 5238 -977 2147 117 0 7 chr1 39568810 39569119 -242624545 + AluSg SINE Alu 1 307 -3 3135 172 67 199 chr1 39569119 39569156 -242624508 + L1ME1 LINE L1 5238 5278 -937 1622 166 7 58 chr1 39569156 39569464 -242624200 + AluJb SINE Alu 1 292 -20 3135 172 67 199 chr1 39569464 39569734 -242623930 + L1ME1 LINE L1 5278 5098 -1117 2191 98 27 7 chr1 39569734 39570030 -242623634 + AluSx SINE Alu 1 302 -10 3135 172 67 199 chr1 39570030 39570247 -242623417 + L1ME1 LINE L1 5097 5341 -874 227 27 0 54 chr1 39570266 39570303 -242623361 + (TTTG)n Simple_repeat Simple_repeat 3 37 0 1123 168 0 0 chr1 39570307 39570468 -242623196 - AluJb SINE Alu -23 289 129 2755 184 27 65 chr1 39570476 39570781 -242622883 + L1ME1 LINE L1 5381 5696 -539 2216 131 0 0 chr1 39570781 39571087 -242622577 + AluSx SINE Alu 1 306 -6 2755 184 27 65 chr1 39571087 39571306 -242622358 + L1ME1 LINE L1 5696 5869 -366 2165 127 0 10 chr1 39571306 39571614 -242622050 + AluSx SINE Alu 2 306 -6 2755 184 27 65 chr1 39571614 39571855 -242621809 + L1ME1 LINE L1 5869 6118 -117 425 210 57 0 chr1 39571893 39572017 -242621647 + L1MB7 LINE L1 6045 6175 -9 445 256 42 30 chr1 39572017 39572285 -242621379 + L1MA10 LINE L1 5891 6327 -5 2199 106 3 7 chr1 39572694 39572997 -242620667 + AluSq SINE Alu 1 302 -11 2010 174 19 11 chr1 39573862 39574224 -242619440 + MLT1A1 LTR MaLR 1 365 0 256 136 0 99 chr1 39574393 39574474 -242619190 + (CAAAAA)n Simple_repeat Simple_repeat 5 77 0 2402 90 0 3 chr1 39576238 39576538 -242617126 + AluSp SINE Alu 1 299 -14 668 249 143 46 chr1 39576538 39576640 -242617024 + MIR SINE MIR 22 113 -149 2010 128 13 7 chr1 39576640 39576944 -242616720 + AluSc SINE Alu 1 306 -3 668 249 143 46 chr1 39576944 39577058 -242616606 + MIR SINE MIR 113 259 -3 426 39 0 0 chr1 39577065 39577117 -242616547 + (CAT)n Simple_repeat Simple_repeat 3 54 0 919 305 89 60 chr1 39577128 39578006 -242615658 + L2 LINE L2 688 1590 -1724 677 132 45 196 chr1 39578006 39578226 -242615438 + MER5A DNA MER1_type 1 187 -2 483 323 135 33 chr1 39578293 39578333 -242615331 + L2 LINE L2 2599 2633 -680 2194 168 57 19 chr1 39578333 39578526 -242615138 + Tigger2a DNA MER2_type 1 185 -2523 2216 122 0 0 chr1 39578526 39578829 -242614835 - AluSx SINE Alu -9 303 1 2373 96 0 0 chr1 39578837 39579139 -242614525 - AluY SINE Alu -9 302 1 2194 168 57 19 chr1 39579139 39579354 -242614310 + Tigger2a DNA MER2_type 191 434 0 483 323 135 33 chr1 39579354 39579943 -242613721 + L2 LINE L2 2633 3296 -17 201 298 91 58 chr1 39579945 39580066 -242613598 + L2 LINE L2 2928 3052 -220 418 288 54 18 chr1 39580187 39580298 -242613366 + L2 LINE L2 3145 3259 -13 518 275 84 39 chr1 39580363 39580541 -242613123 + MIR SINE MIR 48 233 -29 252 0 0 0 chr1 39582060 39582088 -242611576 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 838 206 24 0 chr1 39582745 39582910 -242610754 + MER96 DNA MER1_type? 7 175 0 946 301 54 9 chr1 39583538 39583963 -242609701 + L1MEc LINE L1 22 465 -5931 537 215 40 13 chr1 39583956 39584105 -242609559 + L1M4 LINE L1 2907 3059 -3087 * 830 221 25 0 chr1 39584105 39584304 -242609360 + MLT1C LTR MaLR 192 395 -72 284 133 100 0 chr1 39585020 39585080 -242608584 - AluSc SINE Alu 0 299 234 1625 178 7 4 chr1 39585229 39585551 -242608113 - AluJo SINE Alu 0 323 1 953 127 15 0 chr1 39586091 39586225 -242607439 + AluJo SINE Alu 1 136 -176 303 286 136 5 chr1 39586361 39586560 -242607104 + L1MC4a LINE L1 5689 5913 -1895 2115 136 7 0 chr1 39586631 39586941 -242606723 + AluSx SINE Alu 1 312 0 477 210 65 62 chr1 39586985 39587230 -242606434 + L1M4 LINE L1 3047 3295 -2851 2384 104 0 10 chr1 39587230 39587539 -242606125 + AluSx SINE Alu 1 306 -6 477 210 65 62 chr1 39587539 39587569 -242606095 + L1M4 LINE L1 3295 3323 -2823 984 209 67 0 chr1 39587573 39587783 -242605881 + MER58A DNA MER1_type 1 224 0 605 172 91 159 chr1 39587784 39587882 -242605782 + LTR37B LTR ERV1 114 217 -251 283 59 20 20 chr1 39587882 39587933 -242605731 + (TA)n Simple_repeat Simple_repeat 1 51 0 605 172 91 159 chr1 39587933 39587976 -242605688 + LTR37B LTR ERV1 217 261 -207 1706 201 7 7 chr1 39587976 39588280 -242605384 + AluJo SINE Alu 1 304 -8 605 172 91 159 chr1 39588280 39588509 -242605155 + LTR37B LTR ERV1 261 460 -8 402 280 111 32 chr1 39588560 39588749 -242604915 - L3 LINE CR1 -3 1574 1371 184 321 54 0 chr1 39588951 39589007 -242604657 - L2 LINE L2 -10 3262 3204 15492 152 11 16 chr1 39589031 39589674 -242603990 + L1PA14 LINE L1 2154 2799 -3362 2290 113 3 0 chr1 39589674 39589975 -242603689 + AluSq SINE Alu 1 302 -11 15492 152 11 16 chr1 39589975 39593363 -242600301 + L1PA14 LINE L1 2799 6158 -3 2154 80 98 0 chr1 39593365 39593641 -242600023 + AluSq SINE Alu 1 303 -10 22 35 0 0 chr1 39593944 39593973 -242599691 + AT_rich Low_complexity Low_complexity 1 29 0 184 338 0 0 chr1 39594464 39594541 -242599123 + L2 LINE L2 1004 1080 -2234 2434 95 10 0 chr1 39594735 39595041 -242598623 - AluSg SINE Alu -1 309 1 1436 182 4 32 chr1 39595043 39595296 -242598368 - AluJo SINE Alu -18 294 49 224 316 18 0 chr1 39595384 39595441 -242598223 - L2 LINE L2 0 3313 3256 541 289 50 35 chr1 39595563 39595702 -242597962 + L1MC4 LINE L1 5635 5770 -2038 2032 122 14 7 chr1 39595702 39595997 -242597667 + AluSx SINE Alu 1 297 -15 2206 97 0 0 chr1 39595997 39596284 -242597380 + AluY SINE Alu 1 288 -23 541 289 50 35 chr1 39596284 39596295 -242597369 + L1MC4 LINE L1 5770 5779 -2029 275 26 51 0 chr1 39596295 39596334 -242597330 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 2440 83 0 3 chr1 39596334 39596646 -242597018 + AluY SINE Alu 1 311 0 541 289 50 35 chr1 39596646 39596831 -242596833 + L1MC4 LINE L1 5778 5978 -1830 2395 100 0 0 chr1 39596912 39597221 -242596443 - AluSg SINE Alu -1 309 1 440 315 47 51 chr1 39597302 39597379 -242596285 + L2 LINE L2 2735 2811 -461 2240 92 7 10 chr1 39597379 39597682 -242595982 + AluSc SINE Alu 1 302 -7 440 315 47 51 chr1 39597682 39598058 -242595606 + L2 LINE L2 2811 3272 0 483 345 138 28 chr1 39598067 39598458 -242595206 - L2 LINE L2 -2519 795 362 6288 136 31 17 chr1 39599354 39600900 -242592764 - L1MA4A LINE L1 -7 7358 5806 249 217 24 36 chr1 39600909 39600992 -242592672 + L1MC4 LINE L1 6614 6695 -1347 252 109 0 0 chr1 39600994 39601040 -242592624 + LTR66 LTR ERVL 394 439 -171 303 250 0 0 chr1 39601040 39601096 -242592568 - L1MC4 LINE L1 -1341 6701 6646 1166 178 0 5 chr1 39601101 39601303 -242592361 - AluJo SINE Alu -24 288 88 601 92 31 0 chr1 39601328 39601426 -242592238 - L1 LINE L1 -1404 4742 4642 1116 187 0 52 chr1 39601431 39601661 -242592003 + AluJo SINE Alu 5 222 -90 8072 164 44 38 chr1 39601661 39602732 -242590932 - L1MA4A LINE L1 -2164 5044 3955 1551 161 27 0 chr1 39602732 39602993 -242590671 - AluJo SINE Alu -12 300 33 8072 164 44 38 chr1 39602993 39603709 -242589955 - L1MA4A LINE L1 -3253 3955 3245 674 148 9 9 chr1 39603714 39603822 -242589842 - FLAM_C SINE Alu -10 133 26 7785 136 51 28 chr1 39603846 39604690 -242588974 - L1MA4A LINE L1 -3956 3253 2361 1473 186 43 0 chr1 39604690 39604969 -242588695 - AluJb SINE Alu -21 291 1 7785 136 51 28 chr1 39604969 39605559 -242588105 - L1MA4A LINE L1 -4848 2361 1786 3767 213 84 28 chr1 39605531 39606436 -242587228 - L1MA4A LINE L1 -6161 1048 93 * 1761 101 72 0 chr1 39606622 39606899 -242586765 + AluSx SINE Alu 1 297 -15 2445 71 0 0 chr1 39609221 39609531 -242584133 + AluY SINE Alu 1 310 -1 1460 109 87 0 chr1 39609539 39609768 -242583896 + AluSg SINE Alu 60 308 -2 734 240 87 58 chr1 39610078 39610320 -242583344 + MIR SINE MIR 14 262 0 221 300 148 74 chr1 39610333 39610563 -242583101 + L2 LINE L2 3001 3247 -25 180 176 0 0 chr1 39612012 39612046 -242581618 + T-rich Low_complexity Low_complexity 1 34 0 198 0 0 0 chr1 39612259 39612281 -242581383 + (A)n Simple_repeat Simple_repeat 1 22 0 2145 130 0 0 chr1 39612952 39613260 -242580404 + AluSx SINE Alu 1 308 -4 440 264 25 41 chr1 39615529 39615585 -242578079 + L2 LINE L2 3153 3208 -64 1667 173 10 3 chr1 39615585 39615885 -242577779 - AluJo SINE Alu -10 302 1 440 264 25 41 chr1 39615885 39615949 -242577715 + L2 LINE L2 3208 3271 -1 2281 112 0 0 chr1 39615981 39616293 -242577371 - AluSx SINE Alu 0 312 1 493 292 156 24 chr1 39616811 39617039 -242576625 - MIR SINE MIR -8 254 3 2057 131 0 3 chr1 39618729 39619034 -242574630 + AluSx SINE Alu 1 304 -8 290 313 36 0 chr1 39619265 39619348 -242574316 - L2 LINE L2 -2 3311 3226 747 300 85 22 chr1 39619388 39619788 -242573876 + L1MEc LINE L1 35 459 -5937 779 319 119 36 chr1 39620221 39620275 -242573389 - L2 LINE L2 -810 2504 2456 1911 104 61 0 chr1 39620275 39620553 -242573111 + AluSg SINE Alu 1 295 -15 779 319 119 36 chr1 39620553 39621198 -242572466 - L2 LINE L2 -858 2456 1747 186 163 302 0 chr1 39621215 39621258 -242572406 + L2 LINE L2 3258 3313 0 1000 157 59 9 chr1 39621438 39621672 -242571992 + L1M4 LINE L1 5468 5711 -473 22 35 0 0 chr1 39621729 39621758 -242571906 + AT_rich Low_complexity Low_complexity 1 29 0 357 242 24 18 chr1 39621774 39621939 -242571725 + (TA)n Simple_repeat Simple_repeat 1 166 0 245 207 12 37 chr1 39621951 39622033 -242571631 + (TA)n Simple_repeat Simple_repeat 1 80 0 2808 120 12 0 chr1 39622034 39622458 -242571206 + L1MB7 LINE L1 5646 6074 -110 1949 138 3 0 chr1 39622483 39622779 -242570885 + AluSx SINE Alu 1 297 -15 292 201 101 59 chr1 39623165 39623334 -242570330 + Charlie7 DNA MER1_type 2434 2609 -3 362 344 106 51 chr1 39623349 39623694 -242569970 + L2 LINE L2 2770 3148 -124 1635 170 42 0 chr1 39623694 39623982 -242569682 - AluJb SINE Alu -12 300 1 362 344 106 51 chr1 39623982 39624113 -242569551 + L2 LINE L2 3148 3270 -2 409 238 90 25 chr1 39624484 39624606 -242569058 - L2 LINE L2 0 3313 3184 307 215 138 109 chr1 39625281 39625382 -242568282 - L1ME4a LINE L1 -195 5926 5829 730 142 24 31 chr1 39625382 39625509 -242568155 - FLAM_A SINE Alu -7 126 1 307 215 138 109 chr1 39625509 39625747 -242567917 - L1ME4a LINE L1 -292 5829 5577 425 275 136 31 chr1 39625757 39625952 -242567712 - L1ME4a LINE L1 -611 5510 5326 2120 113 0 3 chr1 39625952 39626262 -242567402 - AluSx SINE Alu -3 309 1 425 275 136 31 chr1 39626262 39626294 -242567370 - L1ME4a LINE L1 -795 5326 5299 2056 93 3 17 chr1 39626708 39626999 -242566665 + AluSc SINE Alu 3 289 -20 784 267 18 24 chr1 39627034 39627284 -242566380 + MIR SINE MIR 3 251 -11 1029 217 52 22 chr1 39627292 39627436 -242566228 + AluJo SINE Alu 3 141 -171 1832 134 7 49 chr1 39627436 39627742 -242565922 + AluSx SINE Alu 4 296 -16 1029 217 52 22 chr1 39627742 39627869 -242565795 + AluJo SINE Alu 141 282 -30 297 0 0 0 chr1 39628354 39628387 -242565277 + (GAAA)n Simple_repeat Simple_repeat 1 33 0 203 273 227 38 chr1 39628600 39628732 -242564932 - MIR SINE MIR -36 226 70 331 287 10 40 chr1 39629436 39629537 -242564127 + MIR3 SINE MIR 9 106 -102 263 176 98 0 chr1 39629633 39629684 -242563980 + Charlie8 DNA MER1_type 222 277 -2140 243 88 0 0 chr1 39633062 39633096 -242560568 + (CTG)n Simple_repeat Simple_repeat 3 36 0 255 228 25 25 chr1 39633634 39633713 -242559951 + CT-rich Low_complexity Low_complexity 2 80 0 225 278 8 90 chr1 39634470 39634603 -242559061 + L3b LINE CR1 1332 1453 -130 229 343 112 28 chr1 39634685 39634863 -242558801 + L3b LINE CR1 1362 1554 -29 191 36 36 0 chr1 39636164 39636192 -242557472 + (CA)n Simple_repeat Simple_repeat 2 30 0 616 326 62 5 chr1 39637490 39637714 -242555950 - MIR SINE MIR -6 256 20 616 248 111 0 chr1 39639622 39639775 -242553889 - MIR SINE MIR -72 190 21 459 0 0 0 chr1 39641273 39641324 -242552340 + (CA)n Simple_repeat Simple_repeat 1 51 0 181 286 20 0 chr1 39641364 39641413 -242552251 + L2 LINE L2 3253 3302 -11 431 305 115 20 chr1 39641484 39641684 -242551980 - MIR SINE MIR -27 235 17 319 218 121 40 chr1 39641796 39641920 -242551744 - Charlie8 DNA MER1_type -2246 171 38 1883 159 3 0 chr1 39642262 39642570 -242551094 + AluJo SINE Alu 1 309 -3 738 309 177 29 chr1 39642691 39642904 -242550760 - L2 LINE L2 -338 2976 2796 784 169 0 8 chr1 39642904 39643034 -242550630 - FLAM_C SINE Alu -3 130 2 738 309 177 29 chr1 39643034 39643545 -242550119 - L2 LINE L2 -518 2796 2145 249 296 0 0 chr1 39644473 39644527 -242549137 - L2 LINE L2 -8 3264 3211 265 340 154 26 chr1 39644626 39644782 -242548882 - L2 LINE L2 -532 2782 2607 957 214 0 6 chr1 39644784 39644957 -242548707 - MER5A DNA MER1_type -1 188 17 335 102 2 0 chr1 39644959 39645010 -242548654 - FLAM_A SINE Alu -31 102 58 409 307 63 89 chr1 39645121 39645475 -242548189 - L2 LINE L2 -773 2541 2202 2090 124 3 0 chr1 39645475 39645774 -242547890 + AluSx SINE Alu 1 300 -12 409 307 63 89 chr1 39645774 39645927 -242547737 - L2 LINE L2 -1112 2202 2047 253 283 91 0 chr1 39646596 39646691 -242546973 - MIR SINE MIR -73 135 32 829 224 89 14 chr1 39646691 39646905 -242546759 + MIR SINE MIR 2 231 -31 221 353 121 0 chr1 39647615 39647731 -242545933 - MIR SINE MIR -63 145 16 25 31 0 0 chr1 39647891 39647923 -242545741 + GC_rich Low_complexity Low_complexity 1 32 0 24 53 0 0 chr1 39648833 39648871 -242544793 + GC_rich Low_complexity Low_complexity 1 38 0 202 217 17 0 chr1 39650290 39650350 -242543314 + (TG)n Simple_repeat Simple_repeat 1 61 0 200 217 52 0 chr1 39651578 39651693 -242541971 + (CCCCAG)n Simple_repeat Simple_repeat 1 121 0 1401 65 0 27 chr1 39652903 39653087 -242540577 + AluSc SINE Alu 118 296 -13 566 189 81 0 chr1 39653366 39653453 -242540211 + MER96B DNA MER1_type? 5 84 -333 2325 80 40 0 chr1 39653453 39653753 -242539911 + AluSx SINE Alu 1 312 0 2362 84 0 7 chr1 39653755 39654054 -242539610 + AluSq SINE Alu 1 297 -16 1961 131 32 0 chr1 39654056 39654338 -242539326 - AluSx SINE Alu -21 291 1 566 189 81 0 chr1 39654338 39654392 -242539272 + MER96B DNA MER1_type? 84 164 -253 184 261 89 51 chr1 39654476 39654568 -242539096 - L2 LINE L2 -530 2784 2682 2360 104 0 10 chr1 39654568 39654875 -242538789 + AluSq SINE Alu 1 304 -9 184 261 89 51 chr1 39654875 39654939 -242538725 - L2 LINE L2 -632 2682 2622 458 246 0 63 chr1 39655044 39655122 -242538542 + MER5A DNA MER1_type 1 68 -121 2444 51 0 48 chr1 39655122 39655435 -242538229 + AluY SINE Alu 1 298 -13 458 246 0 63 chr1 39655435 39655498 -242538166 + MER5A DNA MER1_type 68 133 -56 3170 205 45 51 chr1 39655500 39656206 -242537458 - L1MB8 LINE L1 0 6178 5469 2423 97 3 0 chr1 39656206 39656515 -242537149 - AluSp SINE Alu -3 310 1 2225 114 0 13 chr1 39656515 39656821 -242536843 - AluSg SINE Alu -8 302 1 3170 205 45 51 chr1 39656821 39657108 -242536556 - L1MB8 LINE L1 -707 5471 5189 26 0 0 0 chr1 39657108 39657134 -242536530 + AT_rich Low_complexity Low_complexity 1 26 0 841 160 0 0 chr1 39657147 39657278 -242536386 - FLAM_C SINE Alu -4 139 9 889 188 6 61 chr1 39657282 39657463 -242536201 - FAM SINE Alu 0 175 5 682 180 0 50 chr1 39657468 39657535 -242536129 - L1MB8 LINE L1 -951 5195 5126 2313 104 10 0 chr1 39657535 39657844 -242535820 - AluSx SINE Alu 0 312 1 682 180 0 50 chr1 39657844 39657937 -242535727 - L1MB8 LINE L1 -1020 5126 5043 909 138 8 0 chr1 39657956 39658086 -242535578 - AluSq/x SINE Alu -182 131 1 351 0 0 0 chr1 39658247 39658286 -242535378 + (TG)n Simple_repeat Simple_repeat 1 39 0 1899 144 24 27 chr1 39658748 39659046 -242534618 - AluJo SINE Alu -15 297 1 1997 125 54 0 chr1 39659181 39659477 -242534187 - AluJo SINE Alu 0 312 1 429 217 75 0 chr1 39659861 39659967 -242533697 + Charlie8 DNA MER1_type 38 151 -2266 1316 140 20 120 chr1 39660118 39660406 -242533258 + MER33 DNA MER1_type 5 253 -2332 2085 131 0 14 chr1 39660406 39660703 -242532961 + AluJb SINE Alu 1 293 -19 1316 140 20 120 chr1 39660703 39660765 -242532899 + MER33 DNA MER1_type 253 320 -4 269 360 53 9 chr1 39660847 39660961 -242532703 + MIR SINE MIR 2 120 -142 211 376 40 10 chr1 39661433 39661534 -242532130 + L2 LINE L2 3153 3256 -16 731 232 111 31 chr1 39661534 39661770 -242531894 + MIR SINE MIR 4 255 -7 2513 81 3 0 chr1 39662001 39662308 -242531356 + AluSg SINE Alu 1 308 -2 387 331 9 17 chr1 39662759 39662906 -242530758 + MIR SINE MIR 5 148 -62 432 0 0 0 chr1 39663832 39663880 -242529784 + (TG)n Simple_repeat Simple_repeat 1 48 0 189 0 0 0 chr1 39664137 39664158 -242529506 + (TG)n Simple_repeat Simple_repeat 1 21 0 222 160 0 0 chr1 39664917 39664967 -242528697 + (TG)n Simple_repeat Simple_repeat 2 51 0 2379 90 0 3 chr1 39666330 39666631 -242527033 - AluSq SINE Alu -13 300 1 1918 151 14 3 chr1 39666649 39666941 -242526723 + AluJb SINE Alu 1 295 -17 2141 113 35 56 chr1 39666973 39667039 -242526625 - MLT1A1 LTR MaLR 0 365 299 2062 141 17 0 chr1 39667039 39667336 -242526328 - AluSx SINE Alu -10 302 1 2141 113 35 56 chr1 39667336 39667642 -242526022 - MLT1A1 LTR MaLR -66 299 1 221 146 21 0 chr1 39667658 39667706 -242525958 + GA-rich Low_complexity Low_complexity 2 50 0 1696 158 108 0 chr1 39667706 39667985 -242525679 + AluJo SINE Alu 1 309 -3 428 302 201 0 chr1 39668460 39668639 -242525025 + MIR SINE MIR 48 262 0 393 260 68 62 chr1 39668823 39668969 -242524695 + MIR SINE MIR 68 214 -48 1457 275 313 20 chr1 39670634 39671725 -242521939 + L2 LINE L2 1566 2975 -339 623 238 53 26 chr1 39672047 39672236 -242521428 - MER113 DNA MER1_type? -33 488 295 207 224 132 13 chr1 39672398 39672474 -242521190 + MIR SINE MIR 174 258 -4 215 256 105 47 chr1 39672536 39672622 -242521042 - MIR3 SINE MIR -41 167 77 2150 139 3 3 chr1 39672968 39673271 -242520393 + AluSx SINE Alu 1 303 -9 23 0 0 0 chr1 39673271 39673294 -242520370 + AT_rich Low_complexity Low_complexity 1 23 0 261 309 150 48 chr1 39674209 39674494 -242519170 - L2 LINE L2 -443 2871 2536 1904 154 3 35 chr1 39674494 39674806 -242518858 + AluJo SINE Alu 1 302 -10 261 309 150 48 chr1 39674806 39674899 -242518765 - L2 LINE L2 -778 2536 2454 1159 182 34 19 chr1 39674899 39675163 -242518501 + L1MD3 LINE L1 7727 7994 -1 356 353 81 23 chr1 39675166 39675387 -242518277 - L2 LINE L2 -853 2461 2228 441 286 30 8 chr1 39675496 39675629 -242518035 - MIR SINE MIR -3 259 124 2457 76 0 22 chr1 39675701 39676017 -242517647 - AluSx SINE Alu -3 309 1 296 203 72 0 chr1 39676382 39676451 -242517213 + MER5A DNA MER1_type 2 75 -114 469 227 30 0 chr1 39676546 39676678 -242516986 + L1MC4a LINE L1 5760 5895 -1913 1879 155 13 13 chr1 39676694 39676998 -242516666 + AluJb SINE Alu 1 304 -8 2394 84 0 0 chr1 39677143 39677439 -242516225 - AluSc SINE Alu -13 296 1 21 0 0 0 chr1 39677515 39677536 -242516128 + AT_rich Low_complexity Low_complexity 1 21 0 526 193 128 0 chr1 39678040 39678149 -242515515 - L2 LINE L2 -6 3307 3185 1519 137 105 25 chr1 39678411 39678688 -242514976 + AluJo SINE Alu 1 299 -13 2444 68 3 3 chr1 39679145 39679439 -242514225 + AluSq SINE Alu 5 298 -15 436 263 53 58 chr1 39679447 39679637 -242514027 + MER5A DNA MER1_type 1 189 0 6181 124 44 23 chr1 39680832 39682726 -242510938 + L1MA5A LINE L1 4125 6063 -234 2345 102 0 0 chr1 39682726 39683031 -242510633 + AluSx SINE Alu 1 305 -7 6181 124 44 23 chr1 39683031 39683271 -242510393 + L1MA5A LINE L1 6063 6297 0 1383 122 0 9 chr1 39684352 39684582 -242509082 + L1MA2 LINE L1 6077 6304 0 1584 180 4 8 chr1 39684800 39685061 -242508603 + AluJo SINE Alu 1 260 -52 2420 84 0 3 chr1 39685127 39685437 -242508227 - AluSg SINE Alu -1 309 1 1011 196 0 11 chr1 39686007 39686186 -242507478 - AluJo SINE Alu -33 279 103 1985 111 4 11 chr1 39686393 39686663 -242507001 + AluSx SINE Alu 26 293 -19 180 0 0 0 chr1 39686664 39686684 -242506980 + (GA)n Simple_repeat Simple_repeat 1 20 0 752 154 0 0 chr1 39686685 39686795 -242506869 - AluJo SINE Alu -201 111 2 189 271 0 34 chr1 39687076 39687135 -242506529 + MIR SINE MIR 86 142 -120 1231 186 116 25 chr1 39688082 39688357 -242505307 + AluJo SINE Alu 1 300 -2 346 284 68 49 chr1 39688601 39688763 -242504901 + MIR SINE MIR 84 248 -14 256 143 0 82 chr1 39688857 39688906 -242504758 + L2 LINE L2 3210 3254 -18 519 233 70 8 chr1 39689785 39689914 -242503750 + MIR SINE MIR 124 260 -2 441 313 26 57 chr1 39690858 39691050 -242502614 - MIR3 SINE MIR -3 205 20 951 198 24 0 chr1 39691219 39691386 -242502278 - FAM SINE Alu 0 175 5 2198 114 3 0 chr1 39691883 39692173 -242501491 - AluSx SINE Alu -21 291 1 367 337 84 16 chr1 39694224 39694414 -242499250 + MIR SINE MIR 54 256 -6 609 144 0 0 chr1 39695330 39695420 -242498244 - AluSg/x SINE Alu -14 298 209 1191 68 14 0 chr1 39695421 39695569 -242498095 + AluY SINE Alu 150 299 -12 1725 96 0 5 chr1 39695571 39695791 -242497873 - AluSq SINE Alu -94 219 1 38 22 0 0 chr1 39695821 39695866 -242497798 + AT_rich Low_complexity Low_complexity 1 45 0 315 241 103 35 chr1 39696504 39696552 -242497112 - L1ME3A LINE L1 -1 6169 6126 2025 135 37 0 chr1 39696552 39696848 -242496816 + AluSg SINE Alu 1 307 -3 315 241 103 35 chr1 39696848 39696915 -242496749 - L1ME3A LINE L1 -44 6126 6046 252 86 0 0 chr1 39697636 39697671 -242495993 + (A)n Simple_repeat Simple_repeat 1 35 0 183 42 0 0 chr1 39698991 39699015 -242494649 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 2357 119 0 0 chr1 39699296 39699606 -242494058 + AluSx SINE Alu 1 310 -2 2287 96 0 3 chr1 39699607 39699898 -242493766 + AluSc SINE Alu 2 291 -18 2457 86 0 0 chr1 39700306 39700608 -242493056 + AluY SINE Alu 1 302 -9 2124 128 0 3 chr1 39700673 39700963 -242492701 - AluSx SINE Alu -23 289 1 626 143 151 0 chr1 39701612 39701738 -242491926 + MER3 DNA MER1_type 2 146 -63 608 110 0 11 chr1 39701790 39701881 -242491783 + MER3 DNA MER1_type 120 209 0 318 135 0 19 chr1 39701837 39701889 -242491775 - MER3 DNA MER1_type -119 90 40 * 1027 133 51 6 chr1 39701950 39702108 -242491556 + AluJb SINE Alu 142 306 -6 1764 166 32 7 chr1 39702199 39702483 -242491181 + AluJb SINE Alu 1 291 -21 506 232 209 11 chr1 39702484 39702661 -242491003 - MIR SINE MIR -49 213 2 27 0 0 26 chr1 39703404 39703422 -242490242 + AT_rich Low_complexity Low_complexity 1 18 -19 324 0 0 0 chr1 39703422 39703458 -242490206 + (TA)n Simple_repeat Simple_repeat 2 37 0 27 0 0 26 chr1 39703458 39703477 -242490187 + AT_rich Low_complexity Low_complexity 18 37 0 221 193 193 12 chr1 39704010 39704093 -242489571 - MIR SINE MIR -56 206 109 1884 168 0 7 chr1 39704363 39704666 -242488998 + AluJb SINE Alu 12 312 0 2216 110 3 23 chr1 39704712 39705020 -242488644 + AluSp SINE Alu 1 302 -11 4435 133 27 1 chr1 39705120 39705826 -242487838 + L1MC1 LINE L1 5595 6318 -15 1626 180 30 20 chr1 39706564 39706869 -242486795 + AluJo SINE Alu 1 308 -4 23 0 0 0 chr1 39706919 39706942 -242486722 + AT_rich Low_complexity Low_complexity 1 23 0 293 250 0 12 chr1 39707313 39707397 -242486267 - MIR SINE MIR -5 257 175 1943 157 0 3 chr1 39707437 39707737 -242485927 + AluJb SINE Alu 1 299 -13 22 0 0 0 chr1 39707737 39707759 -242485905 + AT_rich Low_complexity Low_complexity 1 22 0 1986 155 0 10 chr1 39707761 39708071 -242485593 + AluSx SINE Alu 1 307 -5 187 309 138 11 chr1 39709093 39709187 -242484477 - MIR SINE MIR -64 144 39 1861 171 0 7 chr1 39709200 39709504 -242484160 - AluJo SINE Alu -10 302 1 1639 142 21 98 chr1 39709600 39709803 -242483861 - AluJo SINE Alu -1 311 143 2418 88 3 0 chr1 39709803 39710099 -242483565 + AluSp SINE Alu 1 297 -16 1639 142 21 98 chr1 39710099 39710232 -242483432 - AluJo SINE Alu -169 143 1 2585 68 0 3 chr1 39710374 39710683 -242482981 + AluSc SINE Alu 1 308 -1 2145 135 72 3 chr1 39710743 39711106 -242482558 + MLT1B LTR MaLR 1 388 -2 1943 162 12 17 chr1 39711349 39711695 -242481969 - MER2 DNA MER2_type 0 344 1 272 285 132 14 chr1 39712686 39712830 -242480834 + L1ME4a LINE L1 5949 6109 -12 22 56 0 0 chr1 39712854 39712890 -242480774 + AT_rich Low_complexity Low_complexity 1 36 0 281 301 107 0 chr1 39713221 39713324 -242480340 + MIR SINE MIR 30 143 -65 2502 84 0 0 chr1 39713797 39714108 -242479556 + AluSx SINE Alu 1 311 -1 426 257 189 6 chr1 39714702 39714877 -242478787 - MIR SINE MIR -38 224 18 458 17 17 0 chr1 39714878 39714937 -242478727 + (CTATA)n Simple_repeat Simple_repeat 4 63 0 311 289 113 25 chr1 39715108 39715267 -242478397 - MIR SINE MIR -26 236 64 2081 101 11 3 chr1 39715753 39716039 -242477625 + AluSp SINE Alu 20 307 -6 2394 48 65 0 chr1 39716776 39717070 -242476594 + AluSp SINE Alu 1 313 0 1719 94 37 4 chr1 39717433 39717678 -242475986 + AluSg SINE Alu 54 306 -4 363 226 26 0 chr1 39717678 39717793 -242475871 + L1ME1 LINE L1 5325 5442 -722 2297 95 0 3 chr1 39717945 39718241 -242475423 + AluSg SINE Alu 2 296 -14 2248 94 7 7 chr1 39718320 39718617 -242475047 + AluSq SINE Alu 1 297 -16 180 0 0 0 chr1 39719330 39719350 -242474314 + (TC)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr1 39719579 39719600 -242474064 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr1 39719643 39719666 -242473998 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 461 163 12 0 chr1 39719672 39719752 -242473912 - FRAM/FAM SINE Alu -96 80 1 972 170 15 78 chr1 39719955 39720161 -242473503 - MER58A DNA MER1_type -31 193 1 203 327 93 0 chr1 39720172 39720279 -242473385 + MIR SINE MIR 30 146 -62 1279 250 80 37 chr1 39720590 39721026 -242472638 + LTR16A1 LTR ERVL 1 455 -2 622 294 52 45 chr1 39721031 39721320 -242472344 + HERV16 LTR ERVL 2 292 -4704 1266 182 101 12 chr1 39721351 39721609 -242472055 + AluJo SINE Alu 1 281 -31 261 139 0 0 chr1 39721625 39721668 -242471996 + (GA)n Simple_repeat Simple_repeat 2 44 0 1094 103 0 20 chr1 39721716 39721862 -242471802 + AluY SINE Alu 1 143 -168 2361 57 0 4 chr1 39721863 39722169 -242471495 + AluY SINE Alu 1 305 0 1518 224 55 24 chr1 39722169 39722476 -242471188 + L1MEc LINE L1 1888 2215 -4181 2512 85 0 0 chr1 39722476 39722782 -242470882 + AluY SINE Alu 1 306 -5 1518 224 55 24 chr1 39722782 39722925 -242470739 + L1MEc LINE L1 2215 2352 -4044 1464 190 114 49 chr1 39722932 39723380 -242470284 + L1ME1 LINE L1 5685 6161 -5 635 289 108 23 chr1 39723389 39723542 -242470122 + ERVL LTR ERVL 2306 2445 -3319 2184 104 7 0 chr1 39723542 39723850 -242469814 + AluSx SINE Alu 2 311 0 635 289 108 23 chr1 39723850 39724048 -242469616 + ERVL LTR ERVL 2445 2688 -3076 307 279 112 52 chr1 39724407 39724694 -242468970 + MER89-int LTR ERV1 6365 6668 -133 713 322 119 4 chr1 39725348 39725758 -242467906 + ERVL LTR ERVL 3027 3547 -2217 451 310 105 36 chr1 39725771 39726103 -242467561 + ERVL LTR ERVL 4552 5262 -90 940 230 97 53 chr1 39726219 39726570 -242467094 + LTR16A1 LTR ERVL 48 457 0 643 269 19 64 chr1 39727662 39727771 -242465893 + MIR SINE MIR 1 113 -149 2107 131 0 0 chr1 39727771 39728062 -242465602 - AluJo SINE Alu -21 291 1 643 269 19 64 chr1 39728062 39728216 -242465448 + MIR SINE MIR 113 252 -10 2418 76 0 7 chr1 39728668 39728972 -242464692 + AluSg1 SINE Alu 1 302 -7 183 162 0 0 chr1 39730648 39730685 -242462979 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 249 250 26 40 chr1 39730723 39730799 -242462865 - L2 LINE L2 -202 3070 2996 597 226 90 66 chr1 39730799 39731011 -242462653 + MIR SINE MIR 2 218 -44 501 184 55 0 chr1 39731236 39731345 -242462319 - L1MD3 LINE L1 0 7995 7881 188 369 50 14 chr1 39731360 39731501 -242462163 - L2 LINE L2 -575 2739 2594 805 258 13 26 chr1 39731985 39732218 -242461446 + MIR SINE MIR 3 232 -30 226 321 71 18 chr1 39732290 39732402 -242461262 + L2 LINE L2 3188 3305 -8 1576 180 14 34 chr1 39733125 39733267 -242460397 + AluJo SINE Alu 1 144 -168 1499 160 63 4 chr1 39733267 39733535 -242460129 + AluJb SINE Alu 14 297 -15 1576 180 14 34 chr1 39733535 39733686 -242459978 + AluJo SINE Alu 144 288 -24 243 0 0 0 chr1 39733687 39733701 -242459963 + (TG)n Simple_repeat Simple_repeat 1 41 0 243 0 0 0 chr1 39733701 39733728 -242459936 + (TG)n Simple_repeat Simple_repeat 2 28 0 454 284 50 11 chr1 39734175 39734376 -242459288 - MIR3 SINE MIR -53 209 3 328 287 65 0 chr1 39734968 39735076 -242458588 + MIR SINE MIR 63 177 -85 440 131 0 0 chr1 39735078 39735139 -242458525 + AluS SINE Alu 2 62 -256 348 43 0 0 chr1 39736012 39736058 -242457606 + (TG)n Simple_repeat Simple_repeat 1 46 0 1981 128 10 20 chr1 39736059 39736363 -242457301 - AluJo SINE Alu -9 303 3 204 256 0 0 chr1 39736750 39736793 -242456871 + (TATATG)n Simple_repeat Simple_repeat 2 44 0 2360 71 0 3 chr1 39736953 39737265 -242456399 - AluY SINE Alu 0 311 1 2182 225 141 82 chr1 39737342 39737469 -242456195 - HAL1 LINE L1 -5 2502 2384 2185 124 3 7 chr1 39737469 39737594 -242456070 + AluSx SINE Alu 1 125 -187 225 0 0 0 chr1 39737594 39737619 -242456045 + (CA)n Simple_repeat Simple_repeat 2 26 0 2185 124 3 7 chr1 39737619 39737800 -242455864 + AluSx SINE Alu 125 306 -6 2182 225 141 82 chr1 39737800 39738453 -242455211 - HAL1 LINE L1 -123 2384 1771 1849 155 7 10 chr1 39738453 39738750 -242454914 + AluSx SINE Alu 1 296 -16 2182 225 141 82 chr1 39738750 39738840 -242454824 - HAL1 LINE L1 -736 1771 1688 2354 106 0 0 chr1 39738840 39739143 -242454521 - AluSc SINE Alu -6 303 1 2182 225 141 82 chr1 39739143 39739459 -242454205 - HAL1 LINE L1 -819 1688 1244 1965 126 4 14 chr1 39739472 39739799 -242453865 - AluSx SINE Alu 0 334 11 305 278 110 47 chr1 39739815 39740006 -242453658 - HAL1 LINE L1 -1811 696 494 852 216 78 85 chr1 39740046 39740193 -242453471 - AluJo SINE Alu -31 281 134 2126 144 0 7 chr1 39740193 39740498 -242453166 - AluSx SINE Alu -9 303 1 189 0 0 0 chr1 39740498 39740519 -242453145 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 2106 110 4 4 chr1 39740519 39740800 -242452864 - AluSc SINE Alu -28 281 1 852 216 78 85 chr1 39740800 39740933 -242452731 - AluJo SINE Alu -175 137 1 658 267 158 43 chr1 39740933 39741356 -242452308 - HAL1 LINE L1 -2034 473 2 1169 210 107 27 chr1 39742695 39742995 -242450669 + MER33 DNA MER1_type 1 324 0 198 0 0 0 chr1 39743724 39743746 -242449918 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 577 234 450 19 chr1 39744111 39744295 -242449369 - L1ME3 LINE L1 -49 6121 6017 2386 71 7 10 chr1 39744295 39744467 -242449197 - AluSp SINE Alu -6 307 135 2417 76 0 16 chr1 39744467 39744771 -242448893 - AluY SINE Alu -12 299 1 2386 71 7 10 chr1 39744771 39744906 -242448758 - AluSp SINE Alu -178 135 1 577 234 450 19 chr1 39744906 39744959 -242448705 - L1ME3 LINE L1 -153 6017 5856 1655 164 30 0 chr1 39745090 39745352 -242448312 + AluJb SINE Alu 11 280 -32 248 147 0 107 chr1 39745403 39745478 -242448186 + (TTCTCC)n Simple_repeat Simple_repeat 6 72 0 1857 145 68 70 chr1 39745622 39745799 -242447865 + MLT1C LTR MaLR 3 179 -211 324 48 0 0 chr1 39745799 39745841 -242447823 + (CA)n Simple_repeat Simple_repeat 2 43 0 1857 145 68 70 chr1 39745841 39746067 -242447597 + MLT1C LTR MaLR 179 325 -65 468 0 0 0 chr1 39746067 39746119 -242447545 + (TTCC)n Simple_repeat Simple_repeat 2 53 0 2221 123 7 0 chr1 39746129 39746431 -242447233 - AluSx SINE Alu -7 305 2 481 193 14 7 chr1 39746432 39746572 -242447092 + CT-rich Low_complexity Low_complexity 2 142 0 1782 163 7 10 chr1 39746591 39746897 -242446767 - AluJb SINE Alu -2 310 6 299 236 28 0 chr1 39746903 39746975 -242446689 + MLT1C LTR MaLR 394 467 0 205 240 142 0 chr1 39748020 39748109 -242445555 + MIR SINE MIR 44 153 -62 2252 121 45 37 chr1 39748161 39748292 -242445372 + L1MB3 LINE L1 5776 5905 -278 2366 83 0 3 chr1 39748292 39748594 -242445070 - AluSx SINE Alu -11 301 1 2252 121 45 37 chr1 39748594 39748866 -242444798 + L1MB3 LINE L1 5905 6182 -1 233 329 188 0 chr1 39749082 39749252 -242444412 + MIR SINE MIR 1 202 -60 2150 127 0 19 chr1 39749254 39749561 -242444103 + AluSx SINE Alu 1 301 -11 2547 74 0 10 chr1 39749568 39749880 -242443784 + AluY SINE Alu 1 309 -2 1572 154 81 11 chr1 39749888 39750160 -242443504 + AluJb SINE Alu 1 291 -21 3116 147 4 0 chr1 39750369 39750838 -242442826 + MER70A LTR ERVL 1 471 -1 632 138 9 0 chr1 39750840 39750956 -242442708 + CT-rich Low_complexity Low_complexity 1 117 0 259 238 48 0 chr1 39751129 39751192 -242442472 + MIR SINE MIR 119 184 -78 181 244 0 0 chr1 39751194 39751235 -242442429 + L2 LINE L2 3265 3305 -8 953 84 8 0 chr1 39751253 39751372 -242442292 + AluSq/x SINE Alu 1 120 -193 506 318 166 28 chr1 39751399 39752164 -242441500 - L2 LINE L2 -778 2536 1648 2102 141 0 0 chr1 39752164 39752463 -242441201 + AluSx SINE Alu 1 299 -13 506 318 166 28 chr1 39752463 39752520 -242441144 - L2 LINE L2 -1666 1648 1600 714 145 0 17 chr1 39752766 39752883 -242440781 - AluJo SINE Alu -176 136 22 302 228 0 0 chr1 39752883 39752940 -242440724 - AluJ/FLAM SINE Alu -245 57 1 2362 90 3 0 chr1 39752995 39753284 -242440380 - AluSp SINE Alu -20 293 4 39 38 0 0 chr1 39753373 39753426 -242440238 + AT_rich Low_complexity Low_complexity 1 53 0 591 103 11 0 chr1 39753453 39753540 -242440124 - AluSq/x SINE Alu -209 104 17 1790 113 0 0 chr1 39754533 39754773 -242438891 - AluSg/x SINE Alu -6 304 65 2372 80 0 23 chr1 39754773 39755073 -242438591 - AluY SINE Alu -18 293 1 760 310 76 53 chr1 39755074 39755396 -242438268 + L2 LINE L2 1384 1697 -1617 1684 169 0 60 chr1 39755396 39755715 -242437949 + AluJo SINE Alu 1 300 -12 760 310 76 53 chr1 39755715 39756076 -242437588 + L2 LINE L2 1697 2083 -1231 516 88 0 0 chr1 39756140 39756220 -242437444 - Alu SINE Alu -1 311 232 1961 119 31 3 chr1 39756220 39756506 -242437158 + AluSq SINE Alu 14 307 -6 2517 69 0 22 chr1 39756509 39756826 -242436838 + AluY SINE Alu 1 310 -1 326 80 20 0 chr1 39756879 39756929 -242436735 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 1357 198 81 34 chr1 39756942 39757067 -242436597 + AluJo SINE Alu 1 119 -193 2131 134 0 3 chr1 39757067 39757366 -242436298 - AluJb SINE Alu -14 298 1 1357 198 81 34 chr1 39757366 39757538 -242436126 + AluJo SINE Alu 119 312 0 2370 109 3 0 chr1 39757542 39757854 -242435810 + AluSq SINE Alu 1 313 0 453 314 20 49 chr1 39757861 39758191 -242435473 + L2 LINE L2 2723 3037 -235 332 298 165 46 chr1 39758533 39758751 -242434913 - MIR SINE MIR -2 260 17 263 252 45 81 chr1 39759519 39759630 -242434034 - MIR SINE MIR -70 192 86 702 224 6 7 chr1 39759708 39759886 -242433778 - L1MD3 LINE L1 -1 7994 7606 1946 157 0 0 chr1 39760501 39760810 -242432854 + AluSx SINE Alu 1 309 0 2022 106 50 36 chr1 39760854 39761155 -242432509 + AluSg SINE Alu 1 305 -5 894 156 21 0 chr1 39761740 39761881 -242431783 + FRAM SINE Alu 22 165 -11 681 134 183 49 chr1 39762158 39762322 -242431342 + AluJb SINE Alu 127 312 0 325 257 90 77 chr1 39762347 39762399 -242431265 - L2 LINE L2 -1284 2030 1980 1727 169 10 36 chr1 39762399 39762707 -242430957 + AluJo SINE Alu 5 304 -8 325 257 90 77 chr1 39762707 39762742 -242430922 - L2 LINE L2 -1334 1980 1947 1974 143 17 10 chr1 39762742 39763042 -242430622 + AluSx SINE Alu 1 302 -10 325 257 90 77 chr1 39763042 39763175 -242430489 - L2 LINE L2 -1367 1947 1806 219 69 0 0 chr1 39763798 39763827 -242429837 + (GA)n Simple_repeat Simple_repeat 2 30 0 2322 111 0 0 chr1 39764039 39764346 -242429318 + AluY SINE Alu 1 307 -4 561 239 0 0 chr1 39764431 39764540 -242429124 + FLAM_C SINE Alu 1 109 -34 251 254 0 0 chr1 39764545 39764604 -242429060 + (CAGA)n Simple_repeat Simple_repeat 3 61 0 1955 129 42 32 chr1 39764656 39764965 -242428699 - AluSx SINE Alu 0 312 1 1920 125 68 0 chr1 39764969 39765250 -242428414 - AluJb SINE Alu -1 311 12 2102 153 0 3 chr1 39765289 39765602 -242428062 - AluJb SINE Alu 0 312 1 629 133 0 0 chr1 39766441 39766539 -242427125 + FLAM_C SINE Alu 14 111 -32 414 0 0 0 chr1 39766554 39766600 -242427064 + (TAAA)n Simple_repeat Simple_repeat 1 46 0 1017 133 10 71 chr1 39766969 39767165 -242426499 - L1M3 LINE L1 -540 5643 5460 1021 167 65 57 chr1 39767302 39767547 -242426117 + MLT2B1 LTR ERVL 1 247 -273 1756 126 36 76 chr1 39767681 39767835 -242425829 + AluJo SINE Alu 1 139 -173 2289 104 0 7 chr1 39767835 39768143 -242425521 + AluSx SINE Alu 3 308 -4 1756 126 36 76 chr1 39768143 39768290 -242425374 + AluJo SINE Alu 139 290 -22 2506 79 0 3 chr1 39768593 39768896 -242424768 - AluSq SINE Alu -11 302 1 1801 159 13 60 chr1 39768944 39769327 -242424337 + MLT1A1 LTR MaLR 1 365 0 2050 124 0 0 chr1 39769370 39769637 -242424027 + AluSx SINE Alu 1 267 -45 675 200 74 0 chr1 39769679 39769814 -242423850 - AluJb SINE Alu -21 291 147 2348 89 27 0 chr1 39769831 39770123 -242423541 - AluSx SINE Alu -12 300 1 1103 273 63 10 chr1 39770474 39770873 -242422791 - LTR16A LTR ERVL -6 444 25 249 314 143 56 chr1 39770895 39771217 -242422447 + L2 LINE L2 2287 2636 -678 21 0 0 0 chr1 39771446 39771467 -242422197 + AT_rich Low_complexity Low_complexity 1 21 0 601 292 127 9 chr1 39771483 39771805 -242421859 + L1ME4a LINE L1 5563 5922 -199 2547 73 0 0 chr1 39772021 39772324 -242421340 + AluY SINE Alu 2 304 -7 184 128 21 21 chr1 39772418 39772465 -242421199 + (TATAA)n Simple_repeat Simple_repeat 1 47 0 2237 166 15 20 chr1 39772467 39772925 -242420739 - L1MB8 LINE L1 -336 5842 5387 971 169 12 0 chr1 39772930 39773090 -242420574 - FRAM SINE Alu 0 166 5 316 228 55 55 chr1 39773153 39773298 -242420366 - L1ME4a LINE L1 -13 6108 5964 229 232 49 37 chr1 39773396 39773478 -242420186 - L1ME4a LINE L1 -380 5786 5704 555 239 250 11 chr1 39773622 39773810 -242419854 - MIR SINE MIR -18 244 12 2165 113 51 20 chr1 39773953 39774306 -242419358 + THE1B LTR MaLR 1 364 0 276 275 156 24 chr1 39774383 39774594 -242419070 + L2 LINE L2 2641 2879 -435 2357 70 40 3 chr1 39774725 39775024 -242418640 + AluY SINE Alu 2 311 0 600 206 91 43 chr1 39775172 39775425 -242418239 - L1MC5 LINE L1 -36 7925 7661 235 209 16 126 chr1 39775457 39775698 -242417966 - L1MC4a LINE L1 0 7890 7624 1435 172 145 14 chr1 39775698 39775994 -242417670 + MER1B DNA MER1_type 1 335 -2 235 209 16 126 chr1 39775994 39776008 -242417656 - L1MC4a LINE L1 -266 7624 7674 1978 134 0 54 chr1 39776008 39776321 -242417343 - AluJo SINE Alu -16 296 1 235 209 16 126 chr1 39776321 39776390 -242417274 - L1MC4a LINE L1 -215 7675 7600 279 0 0 0 chr1 39776390 39776421 -242417243 + (TC)n Simple_repeat Simple_repeat 2 32 0 1303 159 14 5 chr1 39776461 39776668 -242416996 - AluJo SINE Alu -103 209 1 595 212 59 35 chr1 39776668 39776838 -242416826 - L1MC4 LINE L1 -408 7634 7461 271 363 0 0 chr1 39776958 39777038 -242416626 + L2 LINE L2 3141 3220 -52 206 146 0 24 chr1 39777265 39777306 -242416358 + (CCCCCA)n Simple_repeat Simple_repeat 2 41 0 358 267 30 61 chr1 39777851 39778016 -242415648 + MER20B DNA MER1_type 17 176 -607 258 105 0 0 chr1 39778070 39778108 -242415556 + (CA)n Simple_repeat Simple_repeat 1 38 0 253 274 12 12 chr1 39778195 39778279 -242415385 + MIR SINE MIR 65 148 -114 1350 174 0 5 chr1 39778281 39778494 -242415170 + AluJo SINE Alu 1 212 -100 658 135 19 0 chr1 39778503 39778641 -242415023 + AluJb SINE Alu 179 318 0 2059 104 87 0 chr1 39778733 39779020 -242414644 + AluSx SINE Alu 1 312 0 1921 135 0 38 chr1 39779532 39779961 -242413703 + AluSx SINE Alu 5 422 0 238 261 29 0 chr1 39780249 39780318 -242413346 + MIR SINE MIR 118 188 -74 1733 128 10 52 chr1 39780650 39780938 -242412726 + AluJo SINE Alu 1 276 -36 2384 87 3 0 chr1 39780945 39781233 -242412431 - AluSx SINE Alu -21 291 3 2035 105 0 0 chr1 39781519 39781786 -242411878 - AluSx SINE Alu -45 267 1 22 0 0 0 chr1 39782689 39782711 -242410953 + GC_rich Low_complexity Low_complexity 1 22 0 601 237 7 26 chr1 39783835 39783987 -242409677 - MIR SINE MIR 0 262 114 2360 113 7 0 chr1 39784803 39785105 -242408559 - AluSx SINE Alu -8 304 1 1458 172 92 8 chr1 39785242 39785504 -242408160 - AluJo SINE Alu -28 284 1 2120 116 14 7 chr1 39786090 39786384 -242407280 + AluSx SINE Alu 1 296 -16 998 257 16 8 chr1 39786459 39786704 -242406960 - MIR SINE MIR -1 261 15 2137 120 7 3 chr1 39786751 39787042 -242406622 + AluSx SINE Alu 1 292 -20 2029 72 91 0 chr1 39787275 39787572 -242406092 + AluY SINE Alu 2 322 0 1845 156 13 22 chr1 39787577 39787892 -242405772 + AluJo SINE Alu 1 312 0 369 184 30 0 chr1 39787892 39787970 -242405694 - MER2 DNA MER2_type -159 80 1 2315 108 13 0 chr1 39788071 39788378 -242405286 - AluSq SINE Alu -2 311 1 200 230 92 35 chr1 39788839 39788926 -242404738 - MIR3 SINE MIR -19 189 98 308 265 214 13 chr1 39791251 39791485 -242402179 + L2 LINE L2 1979 2259 -1055 2200 97 0 0 chr1 39791542 39791811 -242401853 + AluSx SINE Alu 3 271 -41 211 264 0 0 chr1 39791997 39792050 -242401614 + L2 LINE L2 2597 2649 -665 190 250 14 14 chr1 39792118 39792190 -242401474 + L2 LINE L2 2791 2862 -452 2687 61 0 0 chr1 39794304 39794615 -242399049 + AluSx SINE Alu 1 311 -1 2501 76 7 0 chr1 39795268 39795571 -242398093 - AluSg SINE Alu -5 305 1 241 274 14 14 chr1 39795911 39795984 -242397680 + MLT1K LTR MaLR 516 588 0 2361 107 7 0 chr1 39796213 39796513 -242397151 - AluSx SINE Alu -10 302 1 2356 115 0 6 chr1 39796682 39796995 -242396669 + AluSx SINE Alu 1 311 -1 2178 132 16 0 chr1 39797072 39797375 -242396289 - AluSx SINE Alu -4 308 1 2158 141 3 0 chr1 39797457 39797756 -242395908 - AluSx SINE Alu -12 300 1 418 312 132 55 chr1 39798407 39798539 -242395125 - L2 LINE L2 0 3272 3152 2189 123 0 0 chr1 39798539 39798824 -242394840 + AluSx SINE Alu 6 290 -22 418 312 132 55 chr1 39798824 39798932 -242394732 - L2 LINE L2 -120 3152 3054 768 168 0 8 chr1 39798932 39799063 -242394601 - FLAM_C SINE Alu -2 131 2 418 312 132 55 chr1 39799063 39799318 -242394346 - L2 LINE L2 -218 3054 2742 207 0 0 0 chr1 39800978 39801001 -242392663 + (A)n Simple_repeat Simple_repeat 1 23 0 1312 241 126 0 chr1 39801965 39802330 -242391334 - LTR16A LTR ERVL -6 444 34 287 248 111 8 chr1 39802511 39802628 -242391036 - MIR SINE MIR -6 256 128 1926 164 13 0 chr1 39802903 39803207 -242390457 - AluJb SINE Alu -4 308 1 540 0 0 0 chr1 39803747 39803807 -242389857 + (CA)n Simple_repeat Simple_repeat 2 61 0 212 285 102 51 chr1 39804652 39804789 -242388875 - MIR SINE MIR -53 209 66 337 307 32 109 chr1 39804897 39805087 -242388577 - L2 LINE L2 -2 3270 3108 2168 99 6 78 chr1 39805087 39805420 -242388244 + AluSx SINE Alu 1 309 -3 337 307 32 109 chr1 39805420 39805512 -242388152 - L2 LINE L2 -164 3108 3010 1265 117 16 21 chr1 39805513 39805701 -242387963 + AluSg/x SINE Alu 108 294 -18 2489 91 0 0 chr1 39805745 39806054 -242387610 + AluSg SINE Alu 1 309 -1 237 284 26 86 chr1 39806070 39806186 -242387478 - L2 LINE L2 -218 3054 2946 975 322 80 5 chr1 39806265 39806703 -242386961 - L2 LINE L2 -519 2795 2325 2262 110 0 10 chr1 39807784 39808093 -242385571 - AluSx SINE Alu -6 306 1 734 154 73 0 chr1 39808147 39808270 -242385394 - FLAM_C SINE Alu 0 133 2 1666 167 17 14 chr1 39808522 39808810 -242384854 + AluJo SINE Alu 1 289 -23 2189 123 10 3 chr1 39809223 39809531 -242384133 + AluSx SINE Alu 1 310 -2 2260 108 7 0 chr1 39810251 39810548 -242383116 + AluSx SINE Alu 1 299 -13 2195 122 7 3 chr1 39810763 39811066 -242382598 + AluSx SINE Alu 1 304 -8 22 56 0 0 chr1 39811662 39811698 -242381966 + AT_rich Low_complexity Low_complexity 1 36 0 251 330 43 11 chr1 39812460 39812554 -242381110 + MIR SINE MIR 2 98 -164 243 0 0 0 chr1 39812939 39812966 -242380698 + (TA)n Simple_repeat Simple_repeat 1 27 0 2313 101 0 0 chr1 39813626 39813924 -242379740 - AluSg SINE Alu -12 298 1 24 67 0 0 chr1 39814443 39814488 -242379176 + AT_rich Low_complexity Low_complexity 1 45 0 405 197 13 13 chr1 39814491 39814566 -242379098 + Tigger5 DNA MER2_type 4 78 -2245 234 189 0 0 chr1 39814566 39814603 -242379061 - Tigger5 DNA MER2_type -3 2320 2284 351 200 0 0 chr1 39814614 39814674 -242378990 + Tigger5 DNA MER2_type 2264 2323 0 578 242 112 33 chr1 39814684 39814899 -242378765 - MIR SINE MIR -18 244 13 2343 109 0 0 chr1 39815240 39815544 -242378120 - AluSx SINE Alu -8 304 1 375 327 26 7 chr1 39815736 39815889 -242377775 + L3 LINE CR1 690 845 -732 366 264 37 61 chr1 39815896 39816059 -242377605 + L1ME4a LINE L1 5788 5946 -175 1966 114 18 0 chr1 39816166 39816439 -242377225 - AluSq SINE Alu -33 280 3 2479 74 0 7 chr1 39816518 39816827 -242376837 + AluSc SINE Alu 1 307 -2 1273 134 10 5 chr1 39816827 39817021 -242376643 + AluJo SINE Alu 2 196 -116 617 197 85 37 chr1 39817076 39817198 -242376466 + MIR SINE MIR 48 184 -78 2015 105 7 62 chr1 39817198 39817503 -242376161 - AluSx SINE Alu -23 289 2 617 197 85 37 chr1 39817503 39817568 -242376096 + MIR SINE MIR 184 244 -18 1899 102 3 122 chr1 39817569 39817912 -242375752 - AluY SINE Alu -9 302 1 1591 204 14 0 chr1 39818453 39818747 -242374917 - AluJb SINE Alu -14 298 1 3925 144 67 22 chr1 39818809 39819138 -242374526 - L1MB2 LINE L1 -2 6169 5856 1709 163 46 7 chr1 39819138 39819421 -242374243 - AluJb SINE Alu -18 294 1 3925 144 67 22 chr1 39819421 39819638 -242374026 - L1MB2 LINE L1 -315 5856 5650 1953 85 12 8 chr1 39819638 39819896 -242373768 - AluSq SINE Alu -12 301 43 3925 144 67 22 chr1 39819896 39820110 -242373554 - L1MB2 LINE L1 -521 5650 5374 464 211 61 9 chr1 39820511 39820625 -242373039 - L2 LINE L2 0 3313 3194 199 234 31 16 chr1 39820671 39820735 -242372929 - MIR SINE MIR -10 252 188 2140 85 13 23 chr1 39820765 39821070 -242372594 - AluSx SINE Alu -10 302 1 1798 170 13 10 chr1 39821212 39821523 -242372141 - AluJb SINE Alu 0 312 1 2654 46 0 0 chr1 39821866 39822168 -242371496 + AluY SINE Alu 1 302 -9 2428 81 7 3 chr1 39823643 39823950 -242369714 - AluSg SINE Alu -2 308 1 805 119 0 32 chr1 39825037 39825163 -242368501 + FLAM_C SINE Alu 2 123 -10 198 0 0 0 chr1 39825174 39825196 -242368468 + (TAAAA)n Simple_repeat Simple_repeat 3 24 0 2090 135 30 0 chr1 39825222 39825518 -242368146 - AluSx SINE Alu -7 305 1 24 53 0 0 chr1 39825777 39825815 -242367849 + AT_rich Low_complexity Low_complexity 1 38 0 309 242 0 0 chr1 39826086 39826177 -242367487 + CT-rich Low_complexity Low_complexity 1 91 0 917 246 150 24 chr1 39826647 39827115 -242366549 + L1MC/D LINE L1 5291 5817 -1991 2322 117 0 0 chr1 39827123 39827430 -242366234 + AluSg SINE Alu 1 307 -3 935 261 14 0 chr1 39827457 39827672 -242365992 + MIR SINE MIR 28 245 -17 1837 158 7 10 chr1 39827913 39828216 -242365448 - AluJo SINE Alu -10 302 1 2075 109 0 7 chr1 39829171 39829445 -242364219 - AluSx SINE Alu -13 299 28 1653 174 3 30 chr1 39829929 39830092 -242363572 - AluJb SINE Alu -22 290 137 2337 98 0 20 chr1 39830092 39830398 -242363266 - AluSx SINE Alu -12 300 1 1653 174 3 30 chr1 39830398 39830532 -242363132 - AluJb SINE Alu -175 137 1 1744 160 18 7 chr1 39830534 39830815 -242362849 - AluJo SINE Alu -12 300 17 390 377 10 5 chr1 39831615 39831814 -242361850 + L2 LINE L2 2630 2829 -485 343 272 192 90 chr1 39831858 39832181 -242361483 + L2 LINE L2 2917 3272 0 264 273 210 21 chr1 39832331 39832474 -242361190 + MIR SINE MIR 83 252 -10 927 178 0 41 chr1 39832989 39833158 -242360506 - AluJb SINE Alu -4 308 147 2277 104 0 13 chr1 39833188 39833486 -242360178 + AluSq SINE Alu 1 294 -19 253 313 70 50 chr1 39833560 39833624 -242360040 - MIR SINE MIR -56 206 145 774 179 8 15 chr1 39833624 39833758 -242359906 - FLAM_A SINE Alu 0 133 1 253 313 70 50 chr1 39833758 39833894 -242359770 - MIR SINE MIR -117 145 2 290 241 72 0 chr1 39833984 39834067 -242359597 - L2 LINE L2 0 3272 3184 202 293 143 23 chr1 39834307 39834440 -242359224 + L2 LINE L2 3164 3312 -1 2416 99 0 0 chr1 39834655 39834957 -242358707 - AluSg SINE Alu -8 302 1 366 301 114 8 chr1 39836191 39836314 -242357350 + MER5A DNA MER1_type 1 136 -53 482 187 77 0 chr1 39836315 39836406 -242357258 - Tigger7 DNA MER2_type 0 2587 2490 * 550 122 12 0 chr1 39836405 39836487 -242357177 - Tigger7 DNA MER2_type -2220 267 185 1920 158 3 22 chr1 39838608 39838925 -242354739 - AluJb SINE Alu -1 311 1 1695 187 57 82 chr1 39840311 39840820 -242352844 + L1MC5 LINE L1 6957 7452 -509 2338 100 3 3 chr1 39840820 39841120 -242352544 - AluSx SINE Alu -12 300 1 1695 187 57 82 chr1 39841120 39841187 -242352477 + L1MC5 LINE L1 7452 7519 -442 417 228 6 11 chr1 39841198 39841274 -242352390 + (TA)n Simple_repeat Simple_repeat 2 77 -103 2359 85 3 0 chr1 39841274 39841569 -242352095 - AluSp SINE Alu -17 296 1 417 228 6 11 chr1 39841569 39841578 -242352086 + (TA)n Simple_repeat Simple_repeat 77 85 -95 2228 105 27 0 chr1 39841578 39841872 -242351792 - AluSq SINE Alu -11 302 1 417 228 6 11 chr1 39841872 39841965 -242351699 + (TA)n Simple_repeat Simple_repeat 85 180 0 889 199 141 32 chr1 39842070 39842277 -242351387 + L1MC5 LINE L1 7610 7856 -105 2099 134 55 6 chr1 39842277 39842621 -242351043 + MER46B DNA MER2_type 1 236 0 889 199 141 32 chr1 39842621 39842690 -242350974 + L1MC5 LINE L1 7856 7916 -45 2356 102 0 0 chr1 39842913 39843206 -242350458 + AluSg SINE Alu 1 293 -17 1534 132 36 64 chr1 39843237 39843517 -242350147 - AluJb SINE Alu -16 296 25 846 218 73 73 chr1 39843709 39844067 -242349597 - MER96B DNA MER1_type? -57 360 3 233 96 0 0 chr1 39845244 39845296 -242348368 - LTR66 LTR ERVL -165 445 394 234 231 0 0 chr1 39845304 39845356 -242348308 - L1MC4 LINE L1 -1339 6703 6652 2247 72 7 46 chr1 39845366 39845673 -242347991 - AluSx SINE Alu -17 295 1 881 204 0 0 chr1 39845694 39845851 -242347813 + FRAM SINE Alu 1 157 -9 2292 107 3 3 chr1 39846022 39846330 -242347334 - AluSg SINE Alu -2 308 1 587 234 40 88 chr1 39846363 39846589 -242347075 + LTR33 LTR ERVL 1 215 -306 522 219 9 35 chr1 39846604 39846718 -242346946 - MER81 DNA DNA -1 113 3 347 266 73 8 chr1 39846969 39847093 -242346571 - MIR SINE MIR -8 254 123 667 156 0 209 chr1 39847340 39847490 -242346174 - MER5A DNA MER1_type -6 183 94 1684 139 12 0 chr1 39847490 39847734 -242345930 - AluJb SINE Alu -61 251 5 667 156 0 209 chr1 39847734 39847808 -242345856 - MER5A DNA MER1_type -95 94 6 899 134 67 86 chr1 39848059 39848176 -242345488 - L1MB2 LINE L1 -3 6168 6055 2264 114 0 16 chr1 39848176 39848492 -242345172 - AluSq SINE Alu -2 311 1 899 134 67 86 chr1 39848492 39848583 -242345081 - L1MB2 LINE L1 -116 6055 5964 2217 117 0 7 chr1 39848881 39849181 -242344483 + AluSx SINE Alu 1 298 -14 2101 111 3 29 chr1 39849826 39850132 -242343532 + AluSx SINE Alu 1 298 -14 534 86 37 12 chr1 39850251 39850332 -242343332 + AluS SINE Alu 6 88 -224 1366 137 0 0 chr1 39850417 39850607 -242343057 + AluSg/x SINE Alu 99 288 -24 2171 114 0 3 chr1 39850617 39850924 -242342740 + AluSx SINE Alu 3 308 -4 1555 169 32 14 chr1 39850958 39851237 -242342427 + AluJo SINE Alu 1 284 -28 197 229 0 0 chr1 39851254 39851295 -242342369 + L2 LINE L2 3263 3306 -7 2175 108 0 3 chr1 39851295 39851600 -242342064 + AluSg1 SINE Alu 1 304 -5 572 314 108 58 chr1 39851764 39852597 -242341067 - L2 LINE L2 -18 3254 2397 2483 55 7 0 chr1 39852827 39853135 -242340529 - AluY SINE Alu -1 310 1 1093 81 0 0 chr1 39853135 39853271 -242340393 - AluSq/x SINE Alu -177 136 1 193 265 200 41 chr1 39853793 39853963 -242339701 - L2 LINE L2 -4 3309 3113 668 242 108 139 chr1 39854064 39854195 -242339469 + MLT1H LTR MaLR 1 134 -415 1629 168 4 4 chr1 39854195 39854475 -242339189 + AluJb SINE Alu 1 280 -32 668 242 108 139 chr1 39854475 39854528 -242339136 + MLT1H LTR MaLR 134 187 -362 1085 152 0 0 chr1 39854528 39854693 -242338971 + FRAM SINE Alu 2 166 0 668 242 108 139 chr1 39854693 39854780 -242338884 + MLT1H LTR MaLR 187 275 -274 2302 87 3 0 chr1 39854780 39855078 -242338586 - AluSp SINE Alu -14 299 1 668 242 108 139 chr1 39855078 39855290 -242338374 + MLT1H LTR MaLR 275 469 -80 2257 94 0 0 chr1 39855290 39855587 -242338077 + AluSx SINE Alu 1 297 -15 668 242 108 139 chr1 39855587 39855662 -242338002 + MLT1H LTR MaLR 469 545 -4 594 272 36 49 chr1 39855667 39855891 -242337773 - MIR SINE MIR -22 240 20 1806 148 34 0 chr1 39856247 39856544 -242337120 - AluJb SINE Alu -5 307 1 559 215 30 0 chr1 39856550 39856685 -242336979 - L1MA3 LINE L1 0 6305 6167 778 241 0 0 chr1 39856763 39856937 -242336727 - AluJb SINE Alu 0 310 137 924 118 0 0 chr1 39856977 39857104 -242336560 + FLAM_C SINE Alu 1 127 -6 1592 254 64 39 chr1 39857104 39857519 -242336145 - L1MCc LINE L1 -4360 2762 2359 2198 105 0 0 chr1 39857519 39857825 -242335839 + AluSx SINE Alu 1 306 -6 1592 254 64 39 chr1 39857825 39858805 -242334859 - L1MCc LINE L1 -4763 2359 1129 1317 158 11 34 chr1 39858903 39859147 -242334517 + AluJo SINE Alu 52 291 -21 1998 134 7 0 chr1 39859147 39859452 -242334212 + AluSx SINE Alu 1 307 -5 1317 158 11 34 chr1 39859452 39859473 -242334191 + AluJo SINE Alu 291 311 -1 2064 138 0 0 chr1 39859680 39859991 -242333673 - AluSx SINE Alu -1 311 1 2181 110 3 0 chr1 39860001 39860311 -242333353 - AluSx SINE Alu -1 311 1 446 208 180 118 chr1 39860782 39861027 -242332637 + MIR SINE MIR 2 261 -1 1835 143 3 3 chr1 39861100 39861393 -242332271 + AluJb SINE Alu 1 293 -19 647 274 169 54 chr1 39861862 39862176 -242331488 + HAL1 LINE L1 16 292 -2215 2327 38 0 51 chr1 39862176 39862489 -242331175 + AluY SINE Alu 1 297 -14 647 274 169 54 chr1 39862489 39862788 -242330876 + HAL1 LINE L1 292 700 -1807 439 295 13 0 chr1 39862819 39862975 -242330689 + HAL1 LINE L1 769 926 -1581 1254 231 22 123 chr1 39862983 39863324 -242330340 + L2 LINE L2 2010 2384 -930 1840 103 4 18 chr1 39863324 39863596 -242330068 + AluSx SINE Alu 1 268 -44 1254 231 22 123 chr1 39863596 39863609 -242330055 + L2 LINE L2 2384 2397 -917 180 0 0 0 chr1 39863609 39863629 -242330035 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1254 231 22 123 chr1 39863629 39863715 -242329949 + L2 LINE L2 2397 2398 -916 2172 93 0 7 chr1 39863715 39864005 -242329659 - AluSg SINE Alu -22 288 1 1254 231 22 123 chr1 39864005 39864056 -242329608 + L2 LINE L2 2398 2453 -861 1329 254 31 25 chr1 39864082 39864440 -242329224 - LTR16C LTR ERVL -49 442 83 442 299 169 5 chr1 39864456 39864640 -242329024 + L2 LINE L2 2447 2660 -654 447 88 15 15 chr1 39864644 39864712 -242328952 - MLT1C LTR MaLR -5 462 395 1044 83 0 0 chr1 39864713 39864845 -242328819 + AluSp SINE Alu 1 132 -181 1694 165 3 7 chr1 39864848 39865139 -242328525 + AluSc SINE Alu 1 290 -19 1673 119 0 0 chr1 39865144 39865380 -242328284 + AluSq SINE Alu 1 236 -77 578 285 127 100 chr1 39865524 39866149 -242327515 - L1M4 LINE L1 -949 5197 4590 2099 114 3 0 chr1 39866149 39866456 -242327208 - AluSp SINE Alu -4 309 2 578 285 127 100 chr1 39866456 39866661 -242327003 - L1M4 LINE L1 -1556 4590 4337 2261 96 0 0 chr1 39866661 39866964 -242326700 - AluSx SINE Alu -9 303 1 578 285 127 100 chr1 39866964 39867072 -242326592 - L1M4 LINE L1 -1809 4337 4233 213 39 0 0 chr1 39867073 39867099 -242326565 + (T)n Simple_repeat Simple_repeat 1 26 0 1305 170 9 4 chr1 39867104 39867334 -242326330 - AluJb SINE Alu -81 231 1 195 42 0 0 chr1 39867337 39867361 -242326303 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 1091 171 19 24 chr1 39867389 39867594 -242326070 - AluJo SINE Alu -25 287 84 2296 53 0 0 chr1 39867800 39868082 -242325582 - AluY SINE Alu -29 282 1 2129 117 0 16 chr1 39868592 39868909 -242324755 - AluSx SINE Alu 0 312 1 875 188 24 0 chr1 39868911 39869076 -242324588 - AluJo/FRAM SINE Alu -10 302 134 2175 112 0 0 chr1 39869076 39869381 -242324283 - AluSx SINE Alu -7 305 1 2342 87 0 0 chr1 39869383 39869695 -242323969 - AluSx SINE Alu 0 312 1 1857 157 3 3 chr1 39869707 39870001 -242323663 - AluSx SINE Alu -18 294 1 243 358 0 0 chr1 39870111 39870206 -242323458 + CT-rich Low_complexity Low_complexity 3 97 0 2519 221 20 42 chr1 39870297 39870417 -242323247 - MLT1G LTR MaLR 0 590 469 2173 115 0 10 chr1 39870417 39870730 -242322934 + AluSg SINE Alu 1 310 0 2519 221 20 42 chr1 39870730 39870971 -242322693 - MLT1G LTR MaLR -121 469 245 2186 88 3 0 chr1 39870971 39871267 -242322397 - AluSp SINE Alu -15 298 2 2519 221 20 42 chr1 39871267 39871498 -242322166 - MLT1G LTR MaLR -345 245 10 597 271 25 93 chr1 39871510 39871831 -242321833 + L2 LINE L2 3015 3313 0 293 311 71 20 chr1 39871854 39872050 -242321614 - L3 LINE CR1 -7 1570 1365 1169 132 4 6 chr1 39872052 39872311 -242321353 + AluJb SINE Alu 1 311 -1 540 271 40 93 chr1 39872382 39872629 -242321035 - MIR SINE MIR -12 250 17 513 116 95 175 chr1 39872867 39872981 -242320683 + L1MB5 LINE L1 4103 4224 -1922 3548 68 0 2 chr1 39872981 39873437 -242320227 - L1PA8 LINE L1 -4 6168 5714 1850 152 0 7 chr1 39873437 39873734 -242319930 - AluJb SINE Alu -17 295 1 513 116 95 175 chr1 39873734 39873776 -242319888 + L1MB5 LINE L1 4223 4245 -1901 1952 115 0 42 chr1 39873776 39874089 -242319575 + AluSg SINE Alu 1 300 -10 513 116 95 175 chr1 39874089 39874119 -242319545 + L1MB5 LINE L1 4245 4276 -1870 274 105 0 0 chr1 39874119 39874157 -242319507 - tRNA-Glu-GAG tRNA tRNA -37 38 1 4809 159 29 75 chr1 39874166 39874342 -242319322 + L1MB5 LINE L1 4265 4448 -1726 2240 88 0 0 chr1 39874342 39874639 -242319025 - AluY SINE Alu -13 298 2 4809 159 29 75 chr1 39874639 39874817 -242318847 + L1MB5 LINE L1 4448 4633 -1541 2169 94 6 28 chr1 39874817 39875136 -242318528 + AluSx SINE Alu 1 312 0 480 35 0 0 chr1 39875137 39875195 -242318469 + (CA)n Simple_repeat Simple_repeat 1 58 0 4809 159 29 75 chr1 39875195 39875449 -242318215 + L1MB5 LINE L1 4633 4897 -1277 2149 103 7 0 chr1 39875449 39875749 -242317915 - AluSx SINE Alu -9 303 2 4809 159 29 75 chr1 39875749 39875772 -242317892 + L1MB5 LINE L1 4897 4920 -1254 2096 113 33 0 chr1 39875772 39876074 -242317590 - AluSq SINE Alu 0 313 2 4809 159 29 75 chr1 39876074 39876748 -242316916 + L1MB5 LINE L1 4920 5485 -689 1684 155 0 62 chr1 39876748 39877071 -242316593 + AluJb SINE Alu 1 303 -9 4809 159 29 75 chr1 39877071 39877399 -242316265 + L1MB5 LINE L1 5485 5827 -347 857 112 0 8 chr1 39877400 39877525 -242316139 + FLAM_C SINE Alu 3 126 -17 2041 96 4 4 chr1 39878122 39878403 -242315261 - AluSx SINE Alu -11 301 21 222 359 0 22 chr1 39878615 39878707 -242314957 - MIR SINE MIR -152 110 21 203 156 0 0 chr1 39878776 39878808 -242314856 + (TTCA)n Simple_repeat Simple_repeat 2 33 0 2066 74 7 11 chr1 39879009 39879330 -242314334 - AluY SINE Alu 0 320 1 311 379 55 17 chr1 39879407 39879642 -242314022 - L2 LINE L2 -2853 461 218 2547 48 0 0 chr1 39879955 39880264 -242313400 - AluY SINE Alu -2 309 1 2324 67 0 0 chr1 39880423 39880720 -242312944 + AluY SINE Alu 1 297 -14 2501 42 0 13 chr1 39880778 39881089 -242312575 + AluY SINE Alu 1 307 -4 368 271 57 8 chr1 39881200 39881322 -242312342 + MIR SINE MIR 100 227 -35 2347 142 5 15 chr1 39881419 39881813 -242311851 + MLT1B LTR MaLR 1 390 0 2186 79 7 3 chr1 39882060 39882364 -242311300 - AluSx SINE Alu -7 305 1 30 97 0 0 chr1 39882880 39882973 -242310691 + GC_rich Low_complexity Low_complexity 1 93 0 234 0 0 0 chr1 39882996 39883022 -242310642 + (CGG)n Simple_repeat Simple_repeat 2 27 0 29 47 0 0 chr1 39883073 39883116 -242310548 + GC_rich Low_complexity Low_complexity 1 43 0 225 0 0 0 chr1 39883164 39883189 -242310475 + (CGG)n Simple_repeat Simple_repeat 3 27 0 25 51 0 0 chr1 39883203 39883242 -242310422 + GC_rich Low_complexity Low_complexity 1 39 0 22 70 0 0 chr1 39883280 39883323 -242310341 + GC_rich Low_complexity Low_complexity 1 43 0 519 312 35 6 chr1 39884538 39884711 -242308953 + MIR SINE MIR 75 252 -10 400 279 81 47 chr1 39885382 39885554 -242308110 - MIR SINE MIR -50 212 35 1315 152 76 76 chr1 39885683 39885985 -242307679 + AluSq SINE Alu 9 310 -3 2012 101 44 0 chr1 39886017 39886313 -242307351 + AluSx SINE Alu 1 309 -3 879 233 63 36 chr1 39886372 39886425 -242307239 - MIR SINE MIR -1 261 211 2246 81 10 0 chr1 39886425 39886723 -242306941 - AluSg1 SINE Alu -8 301 1 879 233 63 36 chr1 39886723 39886922 -242306742 - MIR SINE MIR -51 211 2 295 80 26 0 chr1 39886966 39887013 -242306651 + MLT1A1 LTR MaLR 270 344 -46 210 71 0 0 chr1 39887017 39887045 -242306619 + (A)n Simple_repeat Simple_repeat 1 28 0 256 346 63 16 chr1 39887274 39887401 -242306263 + MIR3 SINE MIR 14 146 -62 2047 124 3 0 chr1 39887418 39887717 -242305947 - AluSx SINE Alu -12 300 1 2322 81 0 0 chr1 39887953 39888251 -242305413 + AluY SINE Alu 1 298 -13 1759 132 49 23 chr1 39888300 39888604 -242305060 + AluJb SINE Alu 1 312 0 364 171 27 18 chr1 39888605 39888653 -242305011 + GA-rich Low_complexity Low_complexity 4 50 -65 1968 102 0 4 chr1 39888653 39888928 -242304736 + AluSg SINE Alu 35 308 -2 364 171 27 18 chr1 39888928 39888990 -242304674 + GA-rich Low_complexity Low_complexity 50 115 0 184 0 97 0 chr1 39889179 39889210 -242304454 + T-rich Low_complexity Low_complexity 2 35 0 1997 106 0 3 chr1 39889212 39889494 -242304170 - AluSg SINE Alu -29 281 1 2396 74 0 0 chr1 39889641 39889940 -242303724 - AluY SINE Alu -11 300 2 656 302 116 40 chr1 39889996 39890443 -242303221 + L2 LINE L2 2833 3313 0 257 303 247 0 chr1 39891682 39891844 -242301820 - MIR SINE MIR -14 248 47 834 228 50 0 chr1 39892418 39892598 -242301066 - MER5A DNA MER1_type 0 189 1 208 237 34 17 chr1 39892707 39892766 -242300898 - MIR SINE MIR -1 261 202 508 299 71 11 chr1 39892798 39892982 -242300682 - MIR SINE MIR -59 203 9 1964 132 7 13 chr1 39892986 39893290 -242300374 - AluSx SINE Alu -10 302 1 366 322 164 14 chr1 39893436 39893644 -242300020 - MIR SINE MIR -15 247 9 619 200 291 6 chr1 39894626 39894801 -242298863 - MIR SINE MIR -6 256 32 1935 118 0 30 chr1 39895164 39895484 -242298180 - AluSx SINE Alu 0 312 1 189 0 0 0 chr1 39897775 39897796 -242295868 + (T)n Simple_repeat Simple_repeat 1 21 0 372 103 0 0 chr1 39899073 39899131 -242294533 + (CCTG)n Simple_repeat Simple_repeat 2 59 0 225 65 0 0 chr1 39900717 39900748 -242292916 + (CAG)n Simple_repeat Simple_repeat 2 32 0 182 336 109 17 chr1 39900921 39901040 -242292624 - L2 LINE L2 0 3272 3143 373 307 146 49 chr1 39901068 39901540 -242292124 - L2 LINE L2 -706 2608 2091 957 271 115 20 chr1 39903919 39904310 -242289354 - MLT1L LTR MaLR -62 553 126 225 224 158 43 chr1 39904378 39904506 -242289158 - MIR SINE MIR -47 161 21 308 216 145 2 chr1 39904830 39904925 -242288739 - L1M LINE L1 -756 5410 5318 1442 157 28 39 chr1 39904928 39905214 -242288450 - AluJb SINE Alu -18 294 12 664 209 135 35 chr1 39905232 39905462 -242288202 - L1M4 LINE L1 -813 5333 5081 365 236 28 57 chr1 39905651 39905757 -242287907 - L2 LINE L2 -1 3312 3210 469 279 85 0 chr1 39906464 39906593 -242287071 - MIR SINE MIR -46 216 77 21 36 0 0 chr1 39906630 39906658 -242287006 + AT_rich Low_complexity Low_complexity 1 28 0 299 215 21 65 chr1 39906729 39906822 -242286842 - L2 LINE L2 -1 3312 3224 184 342 25 42 chr1 39906966 39907086 -242286578 - L2 LINE L2 -338 2976 2859 216 333 51 0 chr1 39907116 39907194 -242286470 - L2 LINE L2 -528 2786 2705 224 272 212 52 chr1 39909216 39909697 -242283967 - L2 LINE L2 -1242 2072 1515 180 0 0 0 chr1 39909698 39909718 -242283946 + (T)n Simple_repeat Simple_repeat 1 20 0 2003 107 23 7 chr1 39909727 39910026 -242283638 - AluSq SINE Alu -9 304 1 30 69 0 0 chr1 39910039 39910097 -242283567 + AT_rich Low_complexity Low_complexity 1 58 0 815 116 0 103 chr1 39910170 39910325 -242283339 - AluSg/x SINE Alu -17 295 157 1436 118 0 10 chr1 39910325 39910529 -242283135 - AluSq SINE Alu -111 202 1 2171 111 0 0 chr1 39910540 39910837 -242282827 - AluSx SINE Alu -15 297 1 246 191 44 0 chr1 39911060 39911128 -242282536 - L1MC/D LINE L1 -2368 5440 5370 1847 171 0 0 chr1 39911780 39912090 -242281574 - AluJb SINE Alu -2 310 1 1648 163 7 29 chr1 39912094 39912400 -242281264 - AluJo SINE Alu -3 309 11 553 243 201 0 chr1 39912516 39912660 -242281004 + MER5A DNA MER1_type 17 189 0 302 250 0 71 chr1 39913727 39913839 -242279825 - MIR3 SINE MIR -92 116 13 211 294 78 88 chr1 39915020 39915122 -242278542 - L2 LINE L2 -21 3292 3192 505 238 143 18 chr1 39916121 39916230 -242277434 + MER5A DNA MER1_type 1 140 -49 2321 78 3 0 chr1 39916230 39916524 -242277140 - AluSp SINE Alu -18 295 1 505 238 143 18 chr1 39916524 39916582 -242277082 + MER5A DNA MER1_type 140 189 0 1664 112 80 25 chr1 39916597 39916883 -242276781 - AluSx SINE Alu -10 302 1 1473 269 57 22 chr1 39917234 39917688 -242275976 - L2 LINE L2 -6 3307 2838 703 152 87 4 chr1 39917776 39917962 -242275702 + AluJb SINE Alu 12 291 -21 1744 178 27 23 chr1 39917962 39918485 -242275179 - L1MB7 LINE L1 -4 6180 5606 2315 68 3 0 chr1 39918485 39918779 -242274885 - AluY SINE Alu -16 295 1 1744 178 27 23 chr1 39918779 39918873 -242274791 - L1MB7 LINE L1 -578 5606 5514 3719 146 22 0 chr1 39919100 39919743 -242273921 - L1MB3 LINE L1 0 6183 5506 368 282 16 51 chr1 39920025 39920221 -242273443 - MIR SINE MIR -63 145 5 192 257 115 53 chr1 39920546 39920659 -242273005 - MIR SINE MIR 0 262 143 1842 136 3 3 chr1 39920671 39920958 -242272706 + AluSq SINE Alu 1 287 -26 413 129 0 0 chr1 39921103 39921165 -242272499 + Alu SINE Alu 240 301 -11 30 45 0 0 chr1 39921543 39921587 -242272077 + AT_rich Low_complexity Low_complexity 1 44 0 1993 121 17 0 chr1 39921697 39921995 -242271669 + AluSx SINE Alu 1 303 -9 2240 88 0 23 chr1 39922082 39922389 -242271275 + AluSq SINE Alu 1 300 -13 2078 119 0 0 chr1 39922463 39922756 -242270908 + AluSg SINE Alu 1 293 -17 1586 176 36 0 chr1 39922943 39923244 -242270420 + AluJb SINE Alu 1 312 0 1268 213 20 38 chr1 39923260 39923558 -242270106 + L1ME1 LINE L1 4389 4682 -1464 378 0 0 0 chr1 39923558 39923600 -242270064 + (CA)n Simple_repeat Simple_repeat 2 43 0 1268 213 20 38 chr1 39923600 39923648 -242270016 + L1ME1 LINE L1 4682 4729 -1417 1539 217 104 75 chr1 39923657 39924109 -242269555 + MLT1E LTR MaLR 101 538 -55 2259 90 0 37 chr1 39924109 39924294 -242269370 - AluSx SINE Alu -2 310 120 198 0 0 0 chr1 39924294 39924316 -242269348 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1860 118 0 50 chr1 39924316 39924613 -242269051 - AluSg SINE Alu -28 282 1 2259 90 0 37 chr1 39924613 39924748 -242268916 - AluSx SINE Alu -190 122 1 1539 217 104 75 chr1 39924748 39924796 -242268868 + MLT1E LTR MaLR 538 590 -3 1258 221 54 4 chr1 39924797 39925073 -242268591 + L1ME1 LINE L1 4720 5009 -1137 1323 141 74 50 chr1 39925073 39925371 -242268293 + AluJo SINE Alu 2 306 -6 701 188 7 32 chr1 39925377 39925531 -242268133 + L1ME1 LINE L1 5676 5825 -341 810 266 25 54 chr1 39925580 39925894 -242267770 + L1ME1 LINE L1 5819 6123 -43 2174 77 27 0 chr1 39925894 39926191 -242267473 - AluSq SINE Alu -8 305 1 810 266 25 54 chr1 39926191 39926230 -242267434 + L1ME1 LINE L1 6123 6162 -4 245 348 26 9 chr1 39926472 39926587 -242267077 - L2 LINE L2 -539 2775 2659 45 19 0 0 chr1 39926622 39926674 -242266990 + AT_rich Low_complexity Low_complexity 1 52 0 195 253 172 0 chr1 39926796 39926858 -242266806 - MIR SINE MIR -105 103 42 2442 55 3 0 chr1 39926886 39927196 -242266468 - AluY SINE Alu 0 311 1 698 243 100 36 chr1 39927457 39927873 -242265791 - L1ME2 LINE L1 -207 5957 5401 2151 101 13 0 chr1 39927878 39928176 -242265488 + AluSx SINE Alu 1 302 -10 847 143 0 8 chr1 39928205 39928331 -242265333 + FLAM_C SINE Alu 3 127 -16 239 151 0 57 chr1 39928381 39928434 -242265230 + AluJo/FLAM SINE Alu 120 169 -133 2212 112 0 0 chr1 39928703 39929006 -242264658 - AluSx SINE Alu -9 303 1 1549 183 6 31 chr1 39929082 39929399 -242264265 - AluJo SINE Alu -1 311 3 270 56 0 0 chr1 39929419 39929455 -242264209 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 562 213 9 0 chr1 39929463 39929571 -242264093 - FLAM_A SINE Alu -32 110 2 13119 115 22 26 chr1 39930369 39930689 -242262975 + Tigger1 DNA MER2_type 4 324 -2094 1714 155 0 39 chr1 39930689 39930998 -242262666 - AluJb SINE Alu -15 297 1 13119 115 22 26 chr1 39930998 39931935 -242261729 + Tigger1 DNA MER2_type 324 1263 -1155 2131 114 0 0 chr1 39931935 39932233 -242261431 - AluSg SINE Alu -12 298 1 13119 115 22 26 chr1 39932233 39932776 -242260888 + Tigger1 DNA MER2_type 1263 1799 -619 2397 77 0 0 chr1 39932776 39933087 -242260577 - AluY SINE Alu 0 311 1 13119 115 22 26 chr1 39933087 39933309 -242260355 + Tigger1 DNA MER2_type 1799 2020 -398 1085 168 0 24 chr1 39933309 39933517 -242260147 - AluJo SINE Alu -17 295 93 320 354 78 39 chr1 39933778 39934035 -242259629 + L2 LINE L2 2825 3091 -181 1175 148 141 28 chr1 39934088 39934222 -242259442 + MER33 DNA MER1_type 1 118 -2467 2059 110 3 0 chr1 39934222 39934512 -242259152 - AluSg SINE Alu -19 291 1 1175 148 141 28 chr1 39934512 39934584 -242259080 + MER33 DNA MER1_type 118 180 -2405 2018 117 0 7 chr1 39934584 39934906 -242258758 - AluY SINE Alu 0 311 1 1175 148 141 28 chr1 39934906 39934989 -242258675 + MER33 DNA MER1_type 180 324 0 2218 102 7 0 chr1 39935689 39935994 -242257670 + AluSp SINE Alu 1 307 -6 1939 107 80 0 chr1 39935997 39936286 -242257378 + AluSx SINE Alu 1 312 0 237 258 68 68 chr1 39937322 39937454 -242256210 - L2 LINE L2 -8 3305 3174 677 249 74 19 chr1 39937561 39937859 -242255805 + L1ME1 LINE L1 5725 6052 -114 332 232 0 0 chr1 39937859 39937915 -242255749 - MER2 DNA MER2_type 0 345 290 467 144 39 19 chr1 39937931 39938035 -242255629 + L1MA5A LINE L1 6191 6296 -1 31 44 0 0 chr1 39938087 39938132 -242255532 + AT_rich Low_complexity Low_complexity 1 45 0 1193 105 13 110 chr1 39938218 39938290 -242255374 - MER2 DNA MER2_type -139 206 129 1236 62 152 62 chr1 39938290 39938355 -242255309 - MER30 DNA MER1_type 0 230 172 2203 106 0 6 chr1 39938355 39938666 -242254998 + AluSx SINE Alu 1 309 -3 1236 62 152 62 chr1 39938666 39938811 -242254853 - MER30 DNA MER1_type -58 172 1 1193 105 13 110 chr1 39938811 39938862 -242254802 - MER2 DNA MER2_type -216 129 75 806 171 0 0 chr1 39938862 39938985 -242254679 - FLAM_A SINE Alu -6 127 5 1193 105 13 110 chr1 39938985 39939088 -242254576 - MER2 DNA MER2_type -270 75 1 374 298 81 40 chr1 39939195 39939319 -242254345 + L2 LINE L2 3143 3271 -1 232 200 15 15 chr1 39939319 39939384 -242254280 + (CA)n Simple_repeat Simple_repeat 1 65 0 198 0 0 0 chr1 39940134 39940156 -242253508 + (TTAGG)n Simple_repeat Simple_repeat 2 23 0 301 268 99 63 chr1 39940278 39940420 -242253244 - L2 LINE L2 -1 3271 3125 219 204 0 0 chr1 39942953 39942997 -242250667 + (CCG)n Simple_repeat Simple_repeat 3 46 0 457 327 206 27 chr1 39943651 39944387 -242249277 + L2 LINE L2 1802 2669 -645 334 153 51 0 chr1 39944569 39944628 -242249036 - MER5A DNA MER1_type -1 188 127 2237 90 0 3 chr1 39944630 39944930 -242248734 + AluSx SINE Alu 1 299 -13 1759 132 49 23 chr1 39944979 39945283 -242248381 + AluJb SINE Alu 1 312 0 364 171 27 18 chr1 39945284 39945332 -242248332 + GA-rich Low_complexity Low_complexity 4 50 -65 1968 102 0 4 chr1 39945332 39945607 -242248057 + AluSg SINE Alu 35 308 -2 364 171 27 18 chr1 39945607 39945669 -242247995 + GA-rich Low_complexity Low_complexity 50 115 0 857 56 56 24 chr1 39945814 39945939 -242247725 - L1PA5 LINE L1 0 6154 6026 1280 92 0 0 chr1 39946043 39946207 -242247457 - AluSq SINE Alu -149 164 1 2868 166 39 48 chr1 39946208 39946879 -242246785 + L1MB5 LINE L1 4848 5497 -677 1684 155 0 62 chr1 39946879 39947202 -242246462 + AluJb SINE Alu 1 303 -9 2868 166 39 48 chr1 39947202 39947530 -242246134 + L1MB5 LINE L1 5497 5827 -347 857 112 0 8 chr1 39947531 39947656 -242246008 + FLAM_C SINE Alu 3 126 -17 2041 96 4 4 chr1 39948253 39948534 -242245130 - AluSx SINE Alu -11 301 21 222 359 0 22 chr1 39948746 39948838 -242244826 - MIR SINE MIR -152 110 21 203 156 0 0 chr1 39948907 39948939 -242244725 + (TTCA)n Simple_repeat Simple_repeat 2 33 0 2066 74 7 11 chr1 39949140 39949461 -242244203 - AluY SINE Alu 0 320 1 311 379 55 17 chr1 39949538 39949773 -242243891 - L2 LINE L2 -2853 461 218 2461 62 0 0 chr1 39950086 39950395 -242243269 - AluY SINE Alu -2 309 1 723 290 57 18 chr1 39950408 39950687 -242242977 - L2 LINE L2 -1124 2190 1901 238 200 25 38 chr1 39950854 39950934 -242242730 + L1MEd LINE L1 54 132 -5987 344 222 14 0 chr1 39951226 39951298 -242242366 + L1ME3A LINE L1 5486 5558 -563 1361 187 211 54 chr1 39951302 39951390 -242242274 + L1ME3A LINE L1 5628 5701 -469 2232 107 0 3 chr1 39951390 39951688 -242241976 - AluSx SINE Alu -15 297 1 1361 187 211 54 chr1 39951688 39952064 -242241600 + L1ME3A LINE L1 5701 6165 -5 1753 171 20 3 chr1 39953075 39953373 -242240291 + AluJo SINE Alu 1 303 -9 1416 183 95 0 chr1 39954390 39954664 -242239000 + AluJo SINE Alu 1 300 -12 304 322 35 0 chr1 39955052 39955139 -242238525 - L2 LINE L2 -14 3258 3169 431 65 52 52 chr1 39955316 39955393 -242238271 - L1PA5 LINE L1 -176 5978 5902 196 333 17 0 chr1 39955518 39955578 -242238086 - L2 LINE L2 -217 3055 2995 2250 107 0 0 chr1 39955712 39956012 -242237652 - AluSx SINE Alu -12 300 1 363 236 54 27 chr1 39956302 39956450 -242237214 + MER103 DNA DNA 1 152 -14 1312 154 27 32 chr1 39956499 39956719 -242236945 - MER20 DNA MER1_type 0 219 1 2347 103 0 0 chr1 39957353 39957663 -242236001 + AluSg SINE Alu 1 310 0 186 305 51 42 chr1 39957982 39958100 -242235564 + L2 LINE L2 3187 3305 -8 8